Citrus Sinensis ID: 002424
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 924 | 2.2.26 [Sep-21-2011] | |||||||
| Q8H1U4 | 916 | Anaphase-promoting comple | yes | no | 0.979 | 0.987 | 0.675 | 0.0 | |
| Q5RE52 | 755 | Anaphase-promoting comple | yes | no | 0.360 | 0.441 | 0.251 | 9e-11 | |
| Q9UJX4 | 755 | Anaphase-promoting comple | no | no | 0.360 | 0.441 | 0.251 | 9e-11 | |
| A1L1K3 | 727 | Anaphase-promoting comple | yes | no | 0.373 | 0.474 | 0.254 | 7e-10 | |
| Q5ZKK3 | 756 | Anaphase-promoting comple | yes | no | 0.366 | 0.448 | 0.247 | 6e-09 | |
| Q8BTZ4 | 740 | Anaphase-promoting comple | yes | no | 0.359 | 0.448 | 0.24 | 7e-09 | |
| Q54VV5 | 1017 | Anaphase-promoting comple | yes | no | 0.180 | 0.164 | 0.254 | 1e-07 | |
| Q9P4W7 | 744 | Anaphase-promoting comple | yes | no | 0.125 | 0.155 | 0.257 | 0.0004 |
| >sp|Q8H1U4|APC5_ARATH Anaphase-promoting complex subunit 5 OS=Arabidopsis thaliana GN=APC5 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1205 bits (3118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 616/912 (67%), Positives = 740/912 (81%), Gaps = 7/912 (0%)
Query: 1 MAGILKPPGAFAVTPHKVSVCILIQMYAPPAMMSVPFPFSSVAQHNRFGLYLFALTKSCE 60
MAG+ + GAFAVTPHK+SVCIL+Q+YAP A MS+PFPFSSVAQHNR GLYL +LTKSC+
Sbjct: 1 MAGLTRTAGAFAVTPHKISVCILLQIYAPSAQMSLPFPFSSVAQHNRLGLYLLSLTKSCD 60
Query: 61 DILEPKLDELINQLREIGDVLYQWLTDQLISRLSSLSSPDDLFNLFSDLRAILGGTDLSA 120
DI EPKL++LINQLRE+G+ + WLTD L +R SSL+SPDDL N F+D+R ILG D
Sbjct: 61 DIFEPKLEKLINQLREVGEEMDAWLTDHLTNRFSSLASPDDLLNFFNDMRGILGSLDSGV 120
Query: 121 VDDEQVVLDPNSNLGMFVRRCLLAFNLLCFEGVCHLLTSIGIYCKEALSSCSAYELPCLD 180
V D+Q++LDPNSNLGMFVRRC+LAFNLL FEGVCHL +SI YCKEA SS + + P
Sbjct: 121 VQDDQIILDPNSNLGMFVRRCILAFNLLSFEGVCHLFSSIEDYCKEAHSSFAQFGAP--- 177
Query: 181 DSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVSA 240
+N LE+L +Y+ MD+EN +K +EIE +K AS V FHLH P +L E + +
Sbjct: 178 --NNNLESLIQYDQMDMENYAMDKPTEEIEFQKTASGIVPFHLHTPDSLMKATEGLLHNR 235
Query: 241 VSKSQGGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKHGSSFS 300
S+ K EA+P A A + E FLRTN Q+QG+LMEQADAIE HGSS S
Sbjct: 236 KETSRTSKKDTEATPVARASTSTLEESLVDESLFLRTNLQIQGFLMEQADAIEIHGSSSS 295
Query: 301 LNAFELI--LRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFA 358
++ + L QLQKLAPELHRVHFLRYLN L+ DDYFAAL+NL RYFDYSAGTEGFD
Sbjct: 296 FSSSSIESFLDQLQKLAPELHRVHFLRYLNKLHSDDYFAALDNLLRYFDYSAGTEGFDLV 355
Query: 359 QPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAIS 418
PS GC+ +GRYEI LLCLGMMHF FGHP AL+VLTEAV +SQQ SNDTCLAYTLAA+S
Sbjct: 356 PPSTGCSMYGRYEIGLLCLGMMHFRFGHPNLALEVLTEAVRVSQQLSNDTCLAYTLAAMS 415
Query: 419 NLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHL 478
NLLSE+GI++T+G+LGSSYSP+TS ++LSVQQ++++LLKES RRA+SLKL+RLVA+NHL
Sbjct: 416 NLLSEMGIASTSGVLGSSYSPVTSTASSLSVQQRVYILLKESLRRADSLKLRRLVASNHL 475
Query: 479 AMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESSTMTTDGAFS 538
AMAKF+L HVQRPLLSFGPK +MR +TCP +VCKE+RL +HLISDF SESSTMT DG+ S
Sbjct: 476 AMAKFELMHVQRPLLSFGPKASMRHKTCPVSVCKEIRLGAHLISDFSSESSTMTIDGSLS 535
Query: 539 TSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAY 598
++WLK+LQKP G V++ ++ S K S FQ C SIPGSV QL+G+SYLLRAT+WE Y
Sbjct: 536 SAWLKDLQKPWGPPVISPDSGSRKSSTFFQLCDHLVSIPGSVSQLIGASYLLRATSWELY 595
Query: 599 GSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSV 658
GSAP+ R+NTL+YAT F D SS SDA LA++KLIQHLA++KGYK+AF+ALK+AEEKFL+V
Sbjct: 596 GSAPMARMNTLVYATLFGDSSSSSDAELAYLKLIQHLALYKGYKDAFAALKVAEEKFLTV 655
Query: 659 SKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL 718
SKS++LLLKLQLLHER+LH G+LKLAQ++C+ELG +AS+ GVDM+LK EASLR ARTLL
Sbjct: 656 SKSKVLLLKLQLLHERALHCGNLKLAQRICNELGGLASTAMGVDMELKVEASLREARTLL 715
Query: 719 AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778
AA Q+S+AA VAHSLFC C+KFNLQ+E ASVLLLLAEIHKKSGNAVLG+PYALAS+SFCQ
Sbjct: 716 AAKQYSQAANVAHSLFCTCHKFNLQIEKASVLLLLAEIHKKSGNAVLGLPYALASISFCQ 775
Query: 779 LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKC 838
NLDLLKASATLTLAELWL G NH K A +L+ A P+ILGHGGLELRARA+I EA C
Sbjct: 776 SFNLDLLKASATLTLAELWLGLGSNHTKRALDLLHGAFPMILGHGGLELRARAYIFEANC 835
Query: 839 LLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAA 898
LSDPS SVS + + VLD LRQAS+ELQ LE HELAAEA YL+A+V+DKLGRL EREEAA
Sbjct: 836 YLSDPSSSVSTDSDTVLDSLRQASDELQALEYHELAAEASYLMAMVYDKLGRLDEREEAA 895
Query: 899 ALFKEYVLALEN 910
+LFK++++ALEN
Sbjct: 896 SLFKKHIIALEN 907
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5RE52|APC5_PONAB Anaphase-promoting complex subunit 5 OS=Pongo abelii GN=ANAPC5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 156/374 (41%), Gaps = 41/374 (10%)
Query: 553 VLTQENVSGKDSNAFQFCAQPSSI---PGSVLQLVGSSYLLRATAWEAYGSAP------- 602
++ Q +GK +N + S + S+ +L+ S + W YG +
Sbjct: 384 LVQQRAFAGKTANKLMDALKDSDLLHWKHSLSELIDISIAQKTAIWRLYGRSTMALQQAQ 443
Query: 603 -LTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSA----LKIAEEKFLS 657
L +N+L ++ A+A + HLA + F+A LK +E+F
Sbjct: 444 MLLSMNSLEAVNAGVQQNNTESFAVA----LCHLAELHAEQGCFAAASEVLKHLKERFPP 499
Query: 658 VSKSRILLL----KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRH 713
S+ L + K+Q +R+++ G LA S VTG+ E R
Sbjct: 500 NSQHAQLWMLCDQKIQF--DRAMNDGKYHLAD----------SLVTGITALNSIEGVYRK 547
Query: 714 ARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALAS 773
A L A NQ SEA + L C K SVLL +AE++ +S + + +P L +
Sbjct: 548 AVVLQAQNQMSEAHKLLQKLLVHCQKLKNTEMVISVLLSVAELYWRSSSPTIALPMLLQA 607
Query: 774 LSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI 833
L+ + L L + L LA L G + A +L+ A+ IL G + + RA
Sbjct: 608 LALSKEYRLQYLASETVLNLAFAQLILGI--PEQALSLLHMAIEPILADGAILDKGRAMF 665
Query: 834 AEAKC-LLSDPSFSVSQNPEAV---LDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLG 889
AKC + S S+ + EA+ ++ L +A ++ E + Y A ++ LG
Sbjct: 666 LVAKCQVASAASYDQPKKAEALEAAIENLNEAKNYFAKVDCKERIRDVVYFQARLYHTLG 725
Query: 890 RLAEREEAAALFKE 903
+ ER A LF++
Sbjct: 726 KTQERNRCAMLFRQ 739
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Pongo abelii (taxid: 9601) |
| >sp|Q9UJX4|APC5_HUMAN Anaphase-promoting complex subunit 5 OS=Homo sapiens GN=ANAPC5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 156/374 (41%), Gaps = 41/374 (10%)
Query: 553 VLTQENVSGKDSNAFQFCAQPSSI---PGSVLQLVGSSYLLRATAWEAYGSAP------- 602
++ Q +GK +N + S + S+ +L+ S + W YG +
Sbjct: 384 LVQQRAFAGKTANKLMDALKDSDLLHWKHSLSELIDISIAQKTAIWRLYGRSTMALQQAQ 443
Query: 603 -LTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSA----LKIAEEKFLS 657
L +N+L ++ A+A + HLA + F+A LK +E+F
Sbjct: 444 MLLSMNSLEAVNAGVQQNNTESFAVA----LCHLAELHAEQGCFAAASEVLKHLKERFPP 499
Query: 658 VSKSRILLL----KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRH 713
S+ L + K+Q +R+++ G LA S VTG+ E R
Sbjct: 500 NSQHAQLWMLCDQKIQF--DRAMNDGKYHLAD----------SLVTGITALNSIEGVYRK 547
Query: 714 ARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALAS 773
A L A NQ SEA + L C K SVLL +AE++ +S + + +P L +
Sbjct: 548 AVVLQAQNQMSEAHKLLQKLLVHCQKLKNTEMVISVLLSVAELYWRSSSPTIALPMLLQA 607
Query: 774 LSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI 833
L+ + L L + L LA L G + A +L+ A+ IL G + + RA
Sbjct: 608 LALSKEYRLQYLASETVLNLAFAQLILGI--PEQALSLLHMAIEPILADGAILDKGRAMF 665
Query: 834 AEAKC-LLSDPSFSVSQNPEAV---LDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLG 889
AKC + S S+ + EA+ ++ L +A ++ E + Y A ++ LG
Sbjct: 666 LVAKCQVASAASYDQPKKAEALEAAIENLNEAKNYFAKVDCKERIRDVVYFQARLYHTLG 725
Query: 890 RLAEREEAAALFKE 903
+ ER A LF++
Sbjct: 726 KTQERNRCAMLFRQ 739
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Homo sapiens (taxid: 9606) |
| >sp|A1L1K3|APC5_RAT Anaphase-promoting complex subunit 5 OS=Rattus norvegicus GN=Anapc5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 102/401 (25%), Positives = 163/401 (40%), Gaps = 56/401 (13%)
Query: 540 SWLKNL-QKPMGSLVLTQENV------------SGKDSNAFQFCAQPSSI---PGSVLQL 583
SWL L QK S VL + +V +GK +N + S + S+ +L
Sbjct: 330 SWLYVLGQKRADSYVLLEHSVKKAVHFGLPRAFAGKTANKLMDALKDSDLLHWKHSLSEL 389
Query: 584 VGSSYLLRATAWEAYGSAP--------LTRVNTLIYATCFSDGSSLSDAALAHVKLIQHL 635
+ S + W YG + L +N+L S G ++ V L HL
Sbjct: 390 IDISIAQKTAIWRLYGRSTMALQQAQMLLSMNSL---ESLSAGVQQNNTESFAVALC-HL 445
Query: 636 AVFKGYKEAFSA----LKIAEEKFLSVSKSRILLL----KLQLLHERSLHRGHLKLAQKV 687
A + F+A LK +E+F S+ L + K+Q +R+++ G LA
Sbjct: 446 AELHAEQGCFAAAGEVLKHLKERFPPNSQHAQLWMLCDQKIQF--DRAMNDGKFHLAD-- 501
Query: 688 CDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENA 747
S VTG+ E R A L A NQ +EA + L C K
Sbjct: 502 --------SLVTGITALNGIEGVYRKAVVLQAQNQMTEAHKLLQKLLTYCQKLKNTEMVI 553
Query: 748 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKM 807
SVLL +AE++ +S + + +P L +L+ + L L + L LA L G +
Sbjct: 554 SVLLSVAELYWRSSSPTIAMPVLLEALALSKEYRLQYLASETVLNLAYAQLILGI--PEQ 611
Query: 808 ASNLIQQALPLILGHGGLELRARAFIAEAKCLLS-----DPSFSVSQNPEAVLDPLRQAS 862
A L+ A+ IL G + + RA +KC ++ DP ++ EA + L +A
Sbjct: 612 ALTLLHMAIEPILADGAILDKGRAMFLVSKCQVASAASYDP-VKKAEALEAAIQNLTEAK 670
Query: 863 EELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKE 903
++ E + Y A ++ LG+ ER A +F++
Sbjct: 671 NYFAKVDCRERIRDVSYFQARLYHALGKTQERNHCAMVFRQ 711
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Rattus norvegicus (taxid: 10116) |
| >sp|Q5ZKK3|APC5_CHICK Anaphase-promoting complex subunit 5 OS=Gallus gallus GN=ANAPC5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 153/368 (41%), Gaps = 29/368 (7%)
Query: 553 VLTQENVSGKDSNAFQFCAQPSSI---PGSVLQLVGSSYLLRATAWEAYG--SAPLTRVN 607
++ Q +GK +N + S + S+ +L+ S + W YG + L +
Sbjct: 384 LVQQRAFAGKAANKLMDALKDSDLLHWKHSLSELIDISIAQKTAIWRLYGRSTMALQQAQ 443
Query: 608 TLIYATCFS--DGSSLSDAALAHVKLIQHLAVFKGYKEAFSA----LKIAEEKFLSVSKS 661
TL+ + + A ++ HLA + F+A LK +E+F S+
Sbjct: 444 TLLSMNSLEAVNVGVQQNNTEAFAVVLCHLAELHAEQGYFAAASEILKHLKERFPPNSQH 503
Query: 662 RIL--LLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLA 719
L L ++ ER+++ G +A S V G+ E R A L A
Sbjct: 504 AQLWMLFDQKIQFERAMNDGRYHIAD----------SLVAGITALNSIEGMYRKAIVLKA 553
Query: 720 ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779
NQ EA + L C + SVLL +AE++ +S + +P L +L+F +
Sbjct: 554 QNQMLEAHKLLQKLLIHCQEIKNTEIVISVLLSVAELYWRSSCHTIALPVLLQALAFSRE 613
Query: 780 LNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKC- 838
+L L + L LA L G + N++ A+ L HG + + A AKC
Sbjct: 614 YSLQYLASETVLNLAFSQLILGV--PEQVLNILHMAIEPGLAHGAVLDKGCAMFLVAKCQ 671
Query: 839 LLSDPSFSVSQNPEAV---LDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAERE 895
+ S S+S + EA+ + L +A L ++ E + Y A +F LG+ ER
Sbjct: 672 VASTASYSQQKKAEALESAILNLNEAKTYLAKVDCKEQLRDVLYFQARLFHTLGKTQERN 731
Query: 896 EAAALFKE 903
+ A LF++
Sbjct: 732 KCAMLFRQ 739
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Gallus gallus (taxid: 9031) |
| >sp|Q8BTZ4|APC5_MOUSE Anaphase-promoting complex subunit 5 OS=Mus musculus GN=Anapc5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 63.5 bits (153), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 90/375 (24%), Positives = 154/375 (41%), Gaps = 43/375 (11%)
Query: 553 VLTQENVSGKDSNAFQFCAQPSSI---PGSVLQLVGSSYLLRATAWEAYGSAP------- 602
++ Q +GK +N + S + S+ +L+ S + W YG +
Sbjct: 369 LVQQRAFAGKTANKLMDALKDSDLLHWKHSLSELIDISIAQKTAIWRLYGRSTMALQQAQ 428
Query: 603 -LTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSA----LKIAEEKFLS 657
L +N+L ++ A+A + HLA + F+A LK +++F
Sbjct: 429 MLLSMNSLESLNAGVQQNNTESFAVA----LCHLAELHAEQGCFAAAGEVLKHLKDRFPP 484
Query: 658 VSKSRILLL----KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRH 713
S+ L + K+Q +R+++ G LA S VTG+ E R
Sbjct: 485 NSQHAQLWMLCDQKIQF--DRAMNDGKFHLAD----------SLVTGITALNGIEGVYRK 532
Query: 714 ARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALAS 773
A L A NQ +EA + L C K SVLL +AE++ +S + + +P L +
Sbjct: 533 AVVLQAQNQMTEAHKLLQKLLTYCQKLKNTEMVISVLLSVAELYWRSSSPTIAMPVLLEA 592
Query: 774 LSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI 833
L+ + L L + L LA L G + A L+ A+ IL G + + RA
Sbjct: 593 LALSKEYRLQYLASETVLNLAYAQLILGI--PEQALTLLHMAIEPILADGAVLDKGRAMF 650
Query: 834 AEAKCLLS-----DPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKL 888
+KC ++ DP ++ EA + L +A ++ E + Y A ++ L
Sbjct: 651 LVSKCQVASAASYDP-VKKAEALEAAIQNLSEAKNYFAQVDCRERIRDVAYFQARLYHAL 709
Query: 889 GRLAEREEAAALFKE 903
G+ ER A +F++
Sbjct: 710 GKTQERNHCAMIFRQ 724
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Mus musculus (taxid: 10090) |
| >sp|Q54VV5|APC5_DICDI Anaphase-promoting complex subunit 5 OS=Dictyostelium discoideum GN=anapc5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 45/212 (21%)
Query: 308 LRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAG----------TEGFDF 357
+ +L+ P + RVH + L ++ + DY +LE+LHRYFDY G F F
Sbjct: 242 VNRLKASLPNVKRVHLISLLFNIGYQDYDQSLEDLHRYFDYVNGQMTSSQWSSSASSFLF 301
Query: 358 AQPSI----------------------GCNSFGRYEIALLCLGMMHFHFGHPKQALDVLT 395
G + A+L L +H+HFGH +++ L
Sbjct: 302 TPNDNYQSGNSNSSNYYYNNYNFIGGSGDTTNLMLPYAVLNLVRLHYHFGHYEESYLALR 361
Query: 396 EAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSSYSPITS--IGTTLSVQQQL 453
EA+ ++Q+ ++ +CLA ++ LL + S Y+ + S + L
Sbjct: 362 EAIRIAQERADHSCLALADHWLARLLKK-----------SVYNSMESSNLLQYLLASHSD 410
Query: 454 FVLLKESFRRAESLKLKRLVAANHLAMAKFDL 485
+LK+S R+ L++ L+A NH A +K+ L
Sbjct: 411 SEILKKSIERSRDLEMPDLLALNHTAFSKYKL 442
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9P4W7|APC5_SCHPO Anaphase-promoting complex subunit 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apc5 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 288 QADAIEKHGSSFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFD 347
Q + ++K G + L E + L+ L+ ++ ++LNS + DY ++ENL RYFD
Sbjct: 229 QIEHMQKFGCALPLEMKEKLHDLLEVEENNLNTSYYCKFLNSWFSGDYQQSVENLCRYFD 288
Query: 348 YSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSND 407
+ ++ Y+ ALL L M+ FG ++AL + + + +++ +
Sbjct: 289 HIMHSD------------EKVSYQYALLNLAMLQADFGCNEEALHAIEDTINTARESGDT 336
Query: 408 TCLAYTLA 415
CL + LA
Sbjct: 337 ACLNFALA 344
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 924 | ||||||
| 302143524 | 921 | unnamed protein product [Vitis vinifera] | 0.991 | 0.994 | 0.770 | 0.0 | |
| 449438945 | 917 | PREDICTED: anaphase-promoting complex su | 0.979 | 0.986 | 0.737 | 0.0 | |
| 255584099 | 917 | conserved hypothetical protein [Ricinus | 0.987 | 0.994 | 0.739 | 0.0 | |
| 356553615 | 922 | PREDICTED: LOW QUALITY PROTEIN: anaphase | 0.995 | 0.997 | 0.745 | 0.0 | |
| 297848940 | 916 | binding protein [Arabidopsis lyrata subs | 0.979 | 0.987 | 0.674 | 0.0 | |
| 30679744 | 916 | anaphase-promoting complex subunit 5 [Ar | 0.979 | 0.987 | 0.675 | 0.0 | |
| 51970874 | 916 | unnamed protein product [Arabidopsis tha | 0.979 | 0.987 | 0.674 | 0.0 | |
| 6692677 | 819 | F12K11.7 [Arabidopsis thaliana] | 0.876 | 0.989 | 0.601 | 0.0 | |
| 222617516 | 916 | hypothetical protein OsJ_36942 [Oryza sa | 0.941 | 0.949 | 0.561 | 0.0 | |
| 218187288 | 911 | hypothetical protein OsI_39198 [Oryza sa | 0.936 | 0.949 | 0.558 | 0.0 |
| >gi|302143524|emb|CBI22085.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1430 bits (3702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 713/925 (77%), Positives = 801/925 (86%), Gaps = 9/925 (0%)
Query: 1 MAGILKPPGAFAVTPHKVSVCILIQMYAPPAMMSVPFPF--SSVAQHNRFGLYLFALTKS 58
MA +LKPPG F+VTPHKVSVCI++Q+YAPPA +++PFPF SS+AQHNR G++L ALTKS
Sbjct: 1 MAAMLKPPGNFSVTPHKVSVCIVLQIYAPPAQITLPFPFPFSSIAQHNRLGMFLLALTKS 60
Query: 59 CEDILEPKLDELINQLREIGDVLYQWLTDQLISRLSSLSSPDDLFNLFSDLRAILGGTDL 118
C+DI EPKLDELI QLREIG L WL+D L RLSSLSSPDDLFN FS IL G D
Sbjct: 61 CDDIFEPKLDELITQLREIGGELDHWLSDHLTCRLSSLSSPDDLFNFFS----ILAGPDS 116
Query: 119 SAVDDEQVVLDPNSNLGMFVRRCLLAFNLLCFEGVCHLLTSIGIYCKEALSSCSAYELPC 178
V D+Q++LD NSNLG+F+RRC+LAFNLL FEGVCHLLT+IG YCKEALSSC YELP
Sbjct: 117 GVVVDDQIILDSNSNLGVFLRRCILAFNLLSFEGVCHLLTNIGTYCKEALSSCPTYELPH 176
Query: 179 LDDSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKV 238
LDDSSNE+EAL YENMDLEN VF+KV +E EARK ASE+VSFH+HAPKALFGL+EDI+V
Sbjct: 177 LDDSSNEVEALLVYENMDLENFVFDKVTEETEARKMASEKVSFHIHAPKALFGLIEDIEV 236
Query: 239 SAVSKSQGGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKHGSS 298
SA K + +K EAS AH D +R D G FLRTNWQ+QGYL EQADAIEKH S
Sbjct: 237 SAELKFKHREKTGEASSFAHHMKDTLRGIDPNGGIFLRTNWQIQGYLCEQADAIEKHSCS 296
Query: 299 FSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFA 358
F LNAFE ILRQLQKLAPELHRVHFLRYLN+LYH+DY A+LENLH YFDYSAG EGFDF
Sbjct: 297 FPLNAFESILRQLQKLAPELHRVHFLRYLNNLYHNDYPASLENLHCYFDYSAGAEGFDFV 356
Query: 359 QP-SIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAI 417
QP S NSFGRYEIALLCLGMMHFHFGHPKQAL+VLTEAV +SQQ SNDTCLAYTLAAI
Sbjct: 357 QPTSSASNSFGRYEIALLCLGMMHFHFGHPKQALEVLTEAVRVSQQQSNDTCLAYTLAAI 416
Query: 418 SNLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANH 477
NLLS IGIS+TT ILGSSY P+TSIGT+LS+QQQLFVLL+ S +RA+ LKLKRLVA+N
Sbjct: 417 CNLLSAIGISSTTEILGSSYGPVTSIGTSLSIQQQLFVLLRRSLKRADGLKLKRLVASNR 476
Query: 478 LAMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESSTMTTDGAF 537
LAMAKF LTHVQRPLLSFGPK +M+L+TCP NVCKELRL+SHLIS+F +ESS M TDG F
Sbjct: 477 LAMAKFGLTHVQRPLLSFGPKASMKLKTCPVNVCKELRLSSHLISEFSTESSIMITDGVF 536
Query: 538 STSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEA 597
ST+WLKNLQKPMGSLVL+ EN SG +SNAF FCAQP+SIPGSVLQL+GSSYLLRATAWE
Sbjct: 537 STAWLKNLQKPMGSLVLSLENASGANSNAFHFCAQPNSIPGSVLQLLGSSYLLRATAWEI 596
Query: 598 YGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLS 657
YGSAPL R+N L+YATCFS+ SS +D ALA+ KLIQHLAVFKG++EAF+ALK+ EEKF S
Sbjct: 597 YGSAPLARINALVYATCFSNASSSADVALAYTKLIQHLAVFKGHREAFAALKLVEEKFCS 656
Query: 658 VSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTL 717
+SKSRILLLKLQLLHER+LH GHLKLAQ+VCDELGV+ASSVTGVDM+LKTEASLRHARTL
Sbjct: 657 ISKSRILLLKLQLLHERALHLGHLKLAQQVCDELGVLASSVTGVDMELKTEASLRHARTL 716
Query: 718 LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777
LAANQF +AAAVAHSLFCMCYKFNLQVENA+VLLLLAEIHKKSGNAVLG+PYALASLSFC
Sbjct: 717 LAANQFGQAAAVAHSLFCMCYKFNLQVENATVLLLLAEIHKKSGNAVLGLPYALASLSFC 776
Query: 778 QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAK 837
Q NLDLLKASATLTLAELWLS G NHA+ AS L+Q ALP+ILGHGGLELR+RA+IAEAK
Sbjct: 777 QSFNLDLLKASATLTLAELWLSLGSNHAERASILVQGALPMILGHGGLELRSRAYIAEAK 836
Query: 838 CLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEA 897
C LS+PSFSV +N E VLDPLRQA+EEL++LE HELAAEAFYLIA+VFDKLG+L EREEA
Sbjct: 837 CYLSNPSFSVFENSEVVLDPLRQATEELEILEYHELAAEAFYLIAMVFDKLGQLEEREEA 896
Query: 898 AALFKEYVLALENENRQDEVDPLLS 922
AA F ++V ALEN Q+E DPL +
Sbjct: 897 AASFMKHVKALENP--QNEQDPLFN 919
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438945|ref|XP_004137248.1| PREDICTED: anaphase-promoting complex subunit 5-like [Cucumis sativus] gi|449483128|ref|XP_004156500.1| PREDICTED: anaphase-promoting complex subunit 5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1376 bits (3562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 671/910 (73%), Positives = 782/910 (85%), Gaps = 5/910 (0%)
Query: 1 MAGILKPPGAFAVTPHKVSVCILIQMYAPPAMMSVPFPFSSVAQHNRFGLYLFALTKSCE 60
MAGI K G FAVTPHKVSVCIL+Q+YAPPA +SVPFPFSSV QHNR GL+L ALTKSC+
Sbjct: 1 MAGIFKSQGGFAVTPHKVSVCILLQIYAPPAQISVPFPFSSVTQHNRLGLFLLALTKSCD 60
Query: 61 DILEPKLDELINQLREIGDVLYQWLTDQLISRLSSLSSPDDLFNLFSDLRAILGGTDLSA 120
DILEPKL+ELINQLRE+G +L WL D L SRLSSL+SPDDLFN FS++R G D
Sbjct: 61 DILEPKLEELINQLREVGGLLDHWLIDHLTSRLSSLASPDDLFNFFSEMR----GPDSGV 116
Query: 121 VDDEQVVLDPNSNLGMFVRRCLLAFNLLCFEGVCHLLTSIGIYCKEALSSCSAYELPCLD 180
V+D+Q++LDPNSNLGMF+RRC+LAFN+L FEGVCHLLT+IG+YCKE LSSC Y LD
Sbjct: 117 VEDDQIILDPNSNLGMFLRRCVLAFNVLSFEGVCHLLTNIGMYCKETLSSC-PYGASELD 175
Query: 181 DSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVSA 240
D+ N+LE L EYE+MDLEN+VFEKV++EIEARK+ ++ + FH H P+AL GLVED+ V +
Sbjct: 176 DTRNDLETLPEYESMDLENLVFEKVSEEIEARKRTAQSIPFHFHVPEALSGLVEDVDVPS 235
Query: 241 VSKSQGGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKHGSSFS 300
K + K +E +++ ++ R+ D AFLRTNWQMQGYL QA+ IEK GS FS
Sbjct: 236 FPKCKSTSKAKEGYSYSNSLSNTSRDIDPSGSAFLRTNWQMQGYLDAQAEKIEKFGSLFS 295
Query: 301 LNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQP 360
LNAFEL+L+QLQK+APELHRVHFLRYLN+LYHDDYF+ALEN+HRYFDYSAGTEGFDF P
Sbjct: 296 LNAFELVLKQLQKMAPELHRVHFLRYLNTLYHDDYFSALENVHRYFDYSAGTEGFDFIPP 355
Query: 361 SIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNL 420
GCNSFGRYEIALLCLGMMH HFGHPKQAL+VLTEAV +SQQ SNDTCLAYTLAAI NL
Sbjct: 356 GSGCNSFGRYEIALLCLGMMHVHFGHPKQALEVLTEAVHVSQQQSNDTCLAYTLAAIGNL 415
Query: 421 LSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAM 480
LSE G S T+GILGSSYSP+ S+G +LSVQQQLFVLL ES RRAESLKLKRLVA+NHLAM
Sbjct: 416 LSESGFSRTSGILGSSYSPLLSMGISLSVQQQLFVLLTESLRRAESLKLKRLVASNHLAM 475
Query: 481 AKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESSTMTTDGAFSTS 540
AKF L HVQRPLLSFGP+ + +LRT P +VCKELRL++HLI + +ESST TTDG+FST+
Sbjct: 476 AKFHLMHVQRPLLSFGPRASAKLRTSPISVCKELRLSTHLICQYGTESSTKTTDGSFSTA 535
Query: 541 WLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAYGS 600
WL NLQKP GS VL ++N SG +S+ F AQP+SIPGSVLQL+GSSYLLRATA+E YGS
Sbjct: 536 WLTNLQKPAGSHVLCRDNESGNNSSELPFFAQPTSIPGSVLQLLGSSYLLRATAFEIYGS 595
Query: 601 APLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK 660
APL R+N ++YATCF+D SS SDA+LA+VKLIQHLA+FKGYKEAFSALKIAEE+FLS+SK
Sbjct: 596 APLARINAILYATCFADTSSSSDASLAYVKLIQHLAIFKGYKEAFSALKIAEERFLSLSK 655
Query: 661 SRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAA 720
SRILLLKLQL+HE +LHRG LKLAQ+ C+ELGV+ASSVT VD+DLKTEAS RHARTLLAA
Sbjct: 656 SRILLLKLQLVHEHALHRGCLKLAQQACNELGVLASSVTSVDLDLKTEASFRHARTLLAA 715
Query: 721 NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780
NQFSEAA VAHSLFC+CYK+NLQV+NASVLLLLAEIHKKSGNAV+G+PYALASLSFCQ
Sbjct: 716 NQFSEAARVAHSLFCLCYKYNLQVQNASVLLLLAEIHKKSGNAVVGLPYALASLSFCQSF 775
Query: 781 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLL 840
NLDLLKASATLT+AELWLS GP+H+K A NL+ A P+ILGHGGLELRARAFI EAKC L
Sbjct: 776 NLDLLKASATLTIAELWLSLGPSHSKRALNLLHGAFPMILGHGGLELRARAFIVEAKCYL 835
Query: 841 SDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAAL 900
S P+FSVS++PE VLDPL+QASEELQ+LE HE+AAEAFYL+A+V++KLGRL EREEAA
Sbjct: 836 SSPTFSVSEDPEVVLDPLKQASEELQLLEYHEMAAEAFYLMAMVYNKLGRLEEREEAADS 895
Query: 901 FKEYVLALEN 910
FK++++ALEN
Sbjct: 896 FKKHIVALEN 905
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255584099|ref|XP_002532792.1| conserved hypothetical protein [Ricinus communis] gi|223527462|gb|EEF29594.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1343 bits (3477), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 682/922 (73%), Positives = 780/922 (84%), Gaps = 10/922 (1%)
Query: 1 MAGILKPPG-AFAVTPHKVSVCILIQMYAPPAMMSVPFPFSSVAQHNRFGLYLFALTKSC 59
MA P G AF +TPHKVSVCIL+Q+ P PFPFSS++QHNR GLYL ALTKS
Sbjct: 1 MAATATPTGGAFTLTPHKVSVCILLQLQTTP-----PFPFSSISQHNRLGLYLLALTKSY 55
Query: 60 EDILEPKLDELINQLREIGDVLYQWLTDQLISRLSSLSSPDDLFNLFSDLRAILGGTDLS 119
+DILEP L++L+NQLREIG L QWL L +R+ +L SPDDLF FS++R ILGG+D
Sbjct: 56 DDILEPTLEDLVNQLREIGGSLGQWLIHSLTNRVCNLLSPDDLFTFFSEMRGILGGSDSI 115
Query: 120 AVDDEQVVLDPNSNLGMFVRRCLLAFNLLCFEGVCHLLTSIGIYCKEALSSCSAYELPCL 179
+DD QV+LDPNS LGMF+RRC+LAFN+L FEGVCHL T+I Y KEAL++C YEL +
Sbjct: 116 VMDDSQVILDPNSILGMFLRRCVLAFNVLSFEGVCHLWTNIANY-KEALTNCLPYELHGV 174
Query: 180 DDSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVS 239
D SSN++E+ SEYENMDLEN VFEKV++EIE RK+ASE VSFHLHAP+ LFGLVED++V
Sbjct: 175 DGSSNDMESFSEYENMDLENFVFEKVSEEIEERKQASERVSFHLHAPQGLFGLVEDVEVV 234
Query: 240 AVSKSQGGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKHGSSF 299
A + S+ GDK E H P + + D I FLRTNWQ+QGYLMEQAD IEKHGSSF
Sbjct: 235 A-NPSKHGDKGAEGCRHVHPPGNTATDADPIGEVFLRTNWQVQGYLMEQADTIEKHGSSF 293
Query: 300 SLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQ 359
S NAFE+IL Q++KLAPELHRVH+LRYLNSLYHDDYFAA ENLH YFDYSAGTEGFDFA
Sbjct: 294 SFNAFEMILGQIKKLAPELHRVHYLRYLNSLYHDDYFAAAENLHCYFDYSAGTEGFDFAP 353
Query: 360 PSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISN 419
PS G N+ RYEIALLCLGMMHF+FGHPKQAL VLTEAV +SQ+ SND+CLAYTLAAI N
Sbjct: 354 PSSGSNNSERYEIALLCLGMMHFYFGHPKQALLVLTEAVRVSQEQSNDSCLAYTLAAICN 413
Query: 420 LLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLA 479
LLSEI STT GILG+SYSPITS+G ++SV QQLFVLL+ES +RAESLKLKRLVA+NHLA
Sbjct: 414 LLSEICSSTTAGILGTSYSPITSMGISVSVAQQLFVLLRESLKRAESLKLKRLVASNHLA 473
Query: 480 MAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESSTMTTDGAFST 539
MA+FD+ HVQRPLLSFGPK +M+L+T P NVCK+LRL S+LIS+F SE ST TTDGAFST
Sbjct: 474 MARFDMMHVQRPLLSFGPKVSMKLKTSPINVCKKLRLCSYLISEFASEISTSTTDGAFST 533
Query: 540 SWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAYG 599
+WLKNL KPMGSLVLTQEN SG++ +A QFC QPSSIP SVLQL+GSSYLLRATAWE YG
Sbjct: 534 TWLKNLTKPMGSLVLTQENGSGENFHALQFCMQPSSIPRSVLQLLGSSYLLRATAWETYG 593
Query: 600 SAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS 659
SAPL+R+N L+YATCF D SS SDAAL H KLIQ+LA F+GYKEAFSALK+AEEKFLSVS
Sbjct: 594 SAPLSRINALVYATCFIDSSSSSDAALVHAKLIQNLAAFQGYKEAFSALKVAEEKFLSVS 653
Query: 660 KSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLA 719
+S +LLLKLQLLHER+LHRG LKLAQ+VC+ELGV+ASSV GVDM+LK E SLRHARTLLA
Sbjct: 654 RSVLLLLKLQLLHERALHRGQLKLAQQVCNELGVLASSVNGVDMELKRETSLRHARTLLA 713
Query: 720 ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779
A QFSEAAAVAHSLFCMCYKFN+QV+NA+VLLLLAEIHKKSGNAVLG+PYALASLSFCQ
Sbjct: 714 AKQFSEAAAVAHSLFCMCYKFNMQVQNATVLLLLAEIHKKSGNAVLGLPYALASLSFCQS 773
Query: 780 LNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCL 839
NLDLLKASATLTLAELWLS G NHAK A +L+ ALP++LGHGGLELRARA IAEAKC
Sbjct: 774 FNLDLLKASATLTLAELWLSLGSNHAKRALSLVHGALPMVLGHGGLELRARARIAEAKCY 833
Query: 840 LSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAA 899
LSD S+SV ++PE VLDPL QASEELQVLE HELAAEAFYL+A++FDKLG+L EREEAAA
Sbjct: 834 LSDSSYSVFEDPEVVLDPLTQASEELQVLEYHELAAEAFYLMAMIFDKLGKLEEREEAAA 893
Query: 900 LFKEYVLALENENRQDEVDPLL 921
FK++V ALEN Q+E DPLL
Sbjct: 894 SFKKHVTALENP--QNEDDPLL 913
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553615|ref|XP_003545150.1| PREDICTED: LOW QUALITY PROTEIN: anaphase-promoting complex subunit 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1335 bits (3454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 689/924 (74%), Positives = 783/924 (84%), Gaps = 4/924 (0%)
Query: 1 MAGILKPPGAFAVTPHKVSVCILIQMYAPPAMMSVPFPFSSVAQHNRFGLYLFALTKSCE 60
M GILK PGAFA+TPHKVS+CIL+++YAPPA +SVPFPF+SVAQHNR GL+L ALTKSC+
Sbjct: 1 MGGILKQPGAFAITPHKVSLCILLKIYAPPAQISVPFPFASVAQHNRLGLFLLALTKSCD 60
Query: 61 DILEPKLDELINQLREIG-DVLYQWLTDQLISRLSSLSSPDDLFNLFSDLRAILGGTDLS 119
DI+EPKLDELI+QLR + + W+ DQL+SRLSSLSSPDDLFN FSD+R ILGG D
Sbjct: 61 DIMEPKLDELIHQLRMMSQNWEASWVIDQLMSRLSSLSSPDDLFNFFSDIRGILGGPDSG 120
Query: 120 AVDDEQVVLDPNSNLGMFVRRCLLAFNLLCFEGVCHLLTSIGIYCKEALSSCSAYELPCL 179
AV+D+QV+LD NSNLG+F+RRC+LAFNLL FEGV HLLT++GIYCKE S+C +YE L
Sbjct: 121 AVEDDQVILDMNSNLGIFLRRCVLAFNLLSFEGVSHLLTNLGIYCKEEXSNCPSYEEHGL 180
Query: 180 DDSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVS 239
DDSS+ LE SEYENMDLEN V+EKV++EIEARK+ASE V FHLH L LV+DI V
Sbjct: 181 DDSSSNLETYSEYENMDLENFVYEKVSEEIEARKEASEIVPFHLHTHNTLLSLVDDIDVP 240
Query: 240 AVSKSQGGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKHGSSF 299
A S S+ +K R ASP ++ +R+ D S FLRTNWQ+QGYL EQA IEK+GS+
Sbjct: 241 ADSVSKQSEKVRVASPYGDPSSNMLRDVDHSSPVFLRTNWQVQGYLQEQAHTIEKNGSAV 300
Query: 300 SLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQ 359
S N E+ILRQLQKLAPELHRVHFL YLN L HDDY +ALENLH YFDYSAGTEGFD+
Sbjct: 301 SFNGLEIILRQLQKLAPELHRVHFLSYLNGLSHDDYISALENLHCYFDYSAGTEGFDYI- 359
Query: 360 PSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISN 419
PS+ N FGRYEI LLCLGMMHFHFGHPK AL+VL+EAV +SQQ SNDTCLAYTLAAISN
Sbjct: 360 PSVSGNGFGRYEIGLLCLGMMHFHFGHPKLALEVLSEAVRVSQQQSNDTCLAYTLAAISN 419
Query: 420 LLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLA 479
LL E GIS+T LGSSYSP TSIG +LSVQQQLFVLL+ S +RAESLKLKRLVA+NHLA
Sbjct: 420 LLFENGISSTAATLGSSYSPFTSIGISLSVQQQLFVLLRGSLKRAESLKLKRLVASNHLA 479
Query: 480 MAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESSTMTTDGAFST 539
MAKFDLTHVQRPLLSFGPKT+M+L TCP NVCKE+RL+SHLISDF ESS MT DGAFST
Sbjct: 480 MAKFDLTHVQRPLLSFGPKTSMKLSTCPVNVCKEIRLSSHLISDFSYESSAMTIDGAFST 539
Query: 540 SWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAYG 599
+WL+NLQKP GSLVL QEN SG SNA QF AQP+SIPGSVLQ++G SY+LRATAWE YG
Sbjct: 540 AWLRNLQKPTGSLVLCQENGSGNSSNASQFIAQPTSIPGSVLQVLGLSYILRATAWELYG 599
Query: 600 SAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS 659
S+PL+R+N L++AT F+D SS SDAALA+VKLIQHLAV KGYKEAF ALKIAEEKFLSVS
Sbjct: 600 SSPLSRINALVHATRFADASSSSDAALAYVKLIQHLAVSKGYKEAFFALKIAEEKFLSVS 659
Query: 660 KSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLA 719
KS+ILLLKLQLLHE +LHRG LKLAQK+CDELGV+AS VTGVDM+LKTEASLRHARTLLA
Sbjct: 660 KSQILLLKLQLLHEHALHRGQLKLAQKLCDELGVLASRVTGVDMELKTEASLRHARTLLA 719
Query: 720 ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779
ANQF EAAAVAHSLFCMCYK+NLQVENASVLLLLAEIHKKSGNAVLG+PYALASLSFC
Sbjct: 720 ANQFREAAAVAHSLFCMCYKYNLQVENASVLLLLAEIHKKSGNAVLGLPYALASLSFCLS 779
Query: 780 LNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCL 839
NLDLLKASATLTLAELWLS G +HA A NLI A P+ILGHGGLELR+RAFI EAKC
Sbjct: 780 FNLDLLKASATLTLAELWLSLGSSHATRALNLIHGAFPMILGHGGLELRSRAFIVEAKCY 839
Query: 840 LSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAA 899
L D +F+V +N E V+D LRQASEELQ+LE HELAAEAFYL+A+V+DKLG+L EREEAAA
Sbjct: 840 LCDSNFNVFENYEIVIDSLRQASEELQLLEFHELAAEAFYLMAMVYDKLGQLEEREEAAA 899
Query: 900 LFKEYVLALENENRQDEVDPLLST 923
F++++LAL N QDE DPL+S
Sbjct: 900 SFQKHILALRNP--QDEDDPLVSV 921
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297848940|ref|XP_002892351.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297338193|gb|EFH68610.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1238 bits (3202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 615/912 (67%), Positives = 744/912 (81%), Gaps = 7/912 (0%)
Query: 1 MAGILKPPGAFAVTPHKVSVCILIQMYAPPAMMSVPFPFSSVAQHNRFGLYLFALTKSCE 60
MAG+ + GAFAVTPHK+SVCIL+Q+YAP A MS+PFPFSSVAQHNR GLYL +LTKSC+
Sbjct: 1 MAGLTRTAGAFAVTPHKISVCILLQIYAPSAQMSLPFPFSSVAQHNRLGLYLLSLTKSCD 60
Query: 61 DILEPKLDELINQLREIGDVLYQWLTDQLISRLSSLSSPDDLFNLFSDLRAILGGTDLSA 120
DI EPKL+ELINQLRE+G+ + WLTD L +R S+L+SPDDL N F+D+R ILG D
Sbjct: 61 DIFEPKLEELINQLREVGEEMDAWLTDHLTNRFSALASPDDLLNFFNDMRGILGSLDSGV 120
Query: 121 VDDEQVVLDPNSNLGMFVRRCLLAFNLLCFEGVCHLLTSIGIYCKEALSSCSAYELPCLD 180
V D+Q++LDPNSNLGMFVRRC+LAFNLL FEGVCHL +SI YCKEA SS + + D
Sbjct: 121 VQDDQIILDPNSNLGMFVRRCILAFNLLSFEGVCHLFSSIEDYCKEAHSSSAQF-----D 175
Query: 181 DSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVSA 240
S+N LE+L++Y+ MD+EN +K +EIE +K AS V FHLH P++LF E + +
Sbjct: 176 ASNNNLESLTQYDQMDMENYAMDKATEEIEFQKSASGIVPFHLHTPESLFKATEGLLHTR 235
Query: 241 VSKSQGGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKHGSSFS 300
+ K EA+P A A + + + FLRTN Q+QG+LMEQADAIE HGSS S
Sbjct: 236 KETLRTSKKDTEATPVACASSSTLEDTLVDESLFLRTNLQIQGFLMEQADAIETHGSSSS 295
Query: 301 LNAFELI--LRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFA 358
++ + L QLQ LAPELHRVHFLRYLN L+ DDYFAAL+NL RYFDYSAGTEGFD
Sbjct: 296 FSSSSIESFLEQLQNLAPELHRVHFLRYLNKLHSDDYFAALDNLLRYFDYSAGTEGFDLV 355
Query: 359 QPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAIS 418
PS GC+ +GRYEIALLCLGMMHF FGHP AL+VLTEAV +SQQ SNDTCLAYTLAA+S
Sbjct: 356 PPSTGCSMYGRYEIALLCLGMMHFRFGHPNLALEVLTEAVRVSQQLSNDTCLAYTLAAMS 415
Query: 419 NLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHL 478
NLLSE+GI++TT +LGSSYSP+TS ++LSVQQ++++LLKES RRA+SLKL+RLVA+NHL
Sbjct: 416 NLLSEMGIASTTCVLGSSYSPVTSTASSLSVQQRVYILLKESLRRADSLKLRRLVASNHL 475
Query: 479 AMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESSTMTTDGAFS 538
AMAKF+L HVQRPLLSFGPK + +TCP +VCKE+RL +HLISDF SESSTMT DG+ S
Sbjct: 476 AMAKFELMHVQRPLLSFGPKASTHHKTCPVSVCKEIRLGAHLISDFSSESSTMTIDGSLS 535
Query: 539 TSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAY 598
++WLK+LQKP G V++Q++ S K S FQFC SIPGSV L+G+SYLLRAT+WE +
Sbjct: 536 SAWLKDLQKPWGPPVISQDSGSRKSSTFFQFCDHLVSIPGSVAHLIGASYLLRATSWELF 595
Query: 599 GSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSV 658
GSAP+ R+NTL+YAT F D SS SDA LA++KLIQHLA++KGYK+AF+ALKIAEEKFL+V
Sbjct: 596 GSAPMARMNTLVYATLFGDSSSSSDAELAYLKLIQHLALYKGYKDAFAALKIAEEKFLTV 655
Query: 659 SKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL 718
SKS+ILLLKLQLLHER+LH G+L+LAQ++C+ELG +AS+ GVDM+LK EASLR ARTLL
Sbjct: 656 SKSKILLLKLQLLHERALHCGNLQLAQRICNELGGLASTAMGVDMELKVEASLREARTLL 715
Query: 719 AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778
AA Q+S+AA VAHSLFC C+KFNLQ+E ASVLLLLAEIHKKSGNAVLG+PYALAS+SFCQ
Sbjct: 716 AAKQYSQAANVAHSLFCTCHKFNLQIEKASVLLLLAEIHKKSGNAVLGLPYALASISFCQ 775
Query: 779 LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKC 838
NLDLLKASATLTLAELWL G +HAK A +L+ A P+ILGHGGLELRARA+I+EA C
Sbjct: 776 SFNLDLLKASATLTLAELWLGLGSDHAKRALDLLHGAFPMILGHGGLELRARAYISEANC 835
Query: 839 LLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAA 898
LSDPSFSVS + + VLD LRQAS+ELQ LE HELAAEA YL+A+V+DKLG+L EREEAA
Sbjct: 836 YLSDPSFSVSTDSDTVLDSLRQASDELQALEYHELAAEASYLMAMVYDKLGQLDEREEAA 895
Query: 899 ALFKEYVLALEN 910
+LFK +++ALEN
Sbjct: 896 SLFKMHIIALEN 907
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30679744|ref|NP_172146.2| anaphase-promoting complex subunit 5 [Arabidopsis thaliana] gi|75151975|sp|Q8H1U4.1|APC5_ARATH RecName: Full=Anaphase-promoting complex subunit 5; AltName: Full=Cyclosome subunit 5 gi|23429520|gb|AAN10197.1| APC5 [Arabidopsis thaliana] gi|332189888|gb|AEE28009.1| anaphase-promoting complex subunit 5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1205 bits (3118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 616/912 (67%), Positives = 740/912 (81%), Gaps = 7/912 (0%)
Query: 1 MAGILKPPGAFAVTPHKVSVCILIQMYAPPAMMSVPFPFSSVAQHNRFGLYLFALTKSCE 60
MAG+ + GAFAVTPHK+SVCIL+Q+YAP A MS+PFPFSSVAQHNR GLYL +LTKSC+
Sbjct: 1 MAGLTRTAGAFAVTPHKISVCILLQIYAPSAQMSLPFPFSSVAQHNRLGLYLLSLTKSCD 60
Query: 61 DILEPKLDELINQLREIGDVLYQWLTDQLISRLSSLSSPDDLFNLFSDLRAILGGTDLSA 120
DI EPKL++LINQLRE+G+ + WLTD L +R SSL+SPDDL N F+D+R ILG D
Sbjct: 61 DIFEPKLEKLINQLREVGEEMDAWLTDHLTNRFSSLASPDDLLNFFNDMRGILGSLDSGV 120
Query: 121 VDDEQVVLDPNSNLGMFVRRCLLAFNLLCFEGVCHLLTSIGIYCKEALSSCSAYELPCLD 180
V D+Q++LDPNSNLGMFVRRC+LAFNLL FEGVCHL +SI YCKEA SS + + P
Sbjct: 121 VQDDQIILDPNSNLGMFVRRCILAFNLLSFEGVCHLFSSIEDYCKEAHSSFAQFGAP--- 177
Query: 181 DSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVSA 240
+N LE+L +Y+ MD+EN +K +EIE +K AS V FHLH P +L E + +
Sbjct: 178 --NNNLESLIQYDQMDMENYAMDKPTEEIEFQKTASGIVPFHLHTPDSLMKATEGLLHNR 235
Query: 241 VSKSQGGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKHGSSFS 300
S+ K EA+P A A + E FLRTN Q+QG+LMEQADAIE HGSS S
Sbjct: 236 KETSRTSKKDTEATPVARASTSTLEESLVDESLFLRTNLQIQGFLMEQADAIEIHGSSSS 295
Query: 301 LNAFELI--LRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFA 358
++ + L QLQKLAPELHRVHFLRYLN L+ DDYFAAL+NL RYFDYSAGTEGFD
Sbjct: 296 FSSSSIESFLDQLQKLAPELHRVHFLRYLNKLHSDDYFAALDNLLRYFDYSAGTEGFDLV 355
Query: 359 QPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAIS 418
PS GC+ +GRYEI LLCLGMMHF FGHP AL+VLTEAV +SQQ SNDTCLAYTLAA+S
Sbjct: 356 PPSTGCSMYGRYEIGLLCLGMMHFRFGHPNLALEVLTEAVRVSQQLSNDTCLAYTLAAMS 415
Query: 419 NLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHL 478
NLLSE+GI++T+G+LGSSYSP+TS ++LSVQQ++++LLKES RRA+SLKL+RLVA+NHL
Sbjct: 416 NLLSEMGIASTSGVLGSSYSPVTSTASSLSVQQRVYILLKESLRRADSLKLRRLVASNHL 475
Query: 479 AMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESSTMTTDGAFS 538
AMAKF+L HVQRPLLSFGPK +MR +TCP +VCKE+RL +HLISDF SESSTMT DG+ S
Sbjct: 476 AMAKFELMHVQRPLLSFGPKASMRHKTCPVSVCKEIRLGAHLISDFSSESSTMTIDGSLS 535
Query: 539 TSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAY 598
++WLK+LQKP G V++ ++ S K S FQ C SIPGSV QL+G+SYLLRAT+WE Y
Sbjct: 536 SAWLKDLQKPWGPPVISPDSGSRKSSTFFQLCDHLVSIPGSVSQLIGASYLLRATSWELY 595
Query: 599 GSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSV 658
GSAP+ R+NTL+YAT F D SS SDA LA++KLIQHLA++KGYK+AF+ALK+AEEKFL+V
Sbjct: 596 GSAPMARMNTLVYATLFGDSSSSSDAELAYLKLIQHLALYKGYKDAFAALKVAEEKFLTV 655
Query: 659 SKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL 718
SKS++LLLKLQLLHER+LH G+LKLAQ++C+ELG +AS+ GVDM+LK EASLR ARTLL
Sbjct: 656 SKSKVLLLKLQLLHERALHCGNLKLAQRICNELGGLASTAMGVDMELKVEASLREARTLL 715
Query: 719 AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778
AA Q+S+AA VAHSLFC C+KFNLQ+E ASVLLLLAEIHKKSGNAVLG+PYALAS+SFCQ
Sbjct: 716 AAKQYSQAANVAHSLFCTCHKFNLQIEKASVLLLLAEIHKKSGNAVLGLPYALASISFCQ 775
Query: 779 LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKC 838
NLDLLKASATLTLAELWL G NH K A +L+ A P+ILGHGGLELRARA+I EA C
Sbjct: 776 SFNLDLLKASATLTLAELWLGLGSNHTKRALDLLHGAFPMILGHGGLELRARAYIFEANC 835
Query: 839 LLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAA 898
LSDPS SVS + + VLD LRQAS+ELQ LE HELAAEA YL+A+V+DKLGRL EREEAA
Sbjct: 836 YLSDPSSSVSTDSDTVLDSLRQASDELQALEYHELAAEASYLMAMVYDKLGRLDEREEAA 895
Query: 899 ALFKEYVLALEN 910
+LFK++++ALEN
Sbjct: 896 SLFKKHIIALEN 907
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|51970874|dbj|BAD44129.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1202 bits (3110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 615/912 (67%), Positives = 739/912 (81%), Gaps = 7/912 (0%)
Query: 1 MAGILKPPGAFAVTPHKVSVCILIQMYAPPAMMSVPFPFSSVAQHNRFGLYLFALTKSCE 60
MAG+ + GAFAVTPHK+SVCIL+Q+YAP A MS+PFPFSSVAQHNR GLYL +LTKSC+
Sbjct: 1 MAGLTRTAGAFAVTPHKISVCILLQIYAPSAQMSLPFPFSSVAQHNRLGLYLLSLTKSCD 60
Query: 61 DILEPKLDELINQLREIGDVLYQWLTDQLISRLSSLSSPDDLFNLFSDLRAILGGTDLSA 120
DI EPKL++LINQLRE+G+ + WLTD L +R SSL+SPDDL N F+D+R ILG D
Sbjct: 61 DIFEPKLEKLINQLREVGEEMDAWLTDHLTNRFSSLASPDDLLNFFNDMRGILGSLDSGV 120
Query: 121 VDDEQVVLDPNSNLGMFVRRCLLAFNLLCFEGVCHLLTSIGIYCKEALSSCSAYELPCLD 180
V D+Q++LDPNSNLGMFVRRC+LAFNLL FEGVCHL +SI YCKEA SS + + P
Sbjct: 121 VQDDQIILDPNSNLGMFVRRCILAFNLLSFEGVCHLFSSIEDYCKEAHSSFAQFGAP--- 177
Query: 181 DSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVSA 240
+N LE+L +Y+ MD+EN +K +EIE +K AS V FHLH P +L E + +
Sbjct: 178 --NNNLESLIQYDQMDMENYAMDKPTEEIEFQKTASGIVPFHLHTPDSLMKATEGLLHNR 235
Query: 241 VSKSQGGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKHGSSFS 300
S+ K EA+P A A + E FLRTN Q+QG+LMEQADAIE HGSS S
Sbjct: 236 KETSRTSKKDTEATPVARASTSTLEESLVDESLFLRTNLQIQGFLMEQADAIEIHGSSSS 295
Query: 301 LNAFELI--LRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFA 358
++ + L QLQKLAPELHRVHFLRYLN L+ DDYFAAL+NL RYFDYSAGTEGFD
Sbjct: 296 FSSSSIESFLDQLQKLAPELHRVHFLRYLNKLHSDDYFAALDNLLRYFDYSAGTEGFDLV 355
Query: 359 QPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAIS 418
PS GC+ +GRYEI LLCLGMMHF FGHP AL+VLTEAV +SQQ SNDTCLAYTLAA+S
Sbjct: 356 PPSTGCSMYGRYEIGLLCLGMMHFRFGHPNLALEVLTEAVRVSQQLSNDTCLAYTLAAMS 415
Query: 419 NLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHL 478
NLLSE+GI++T+G+LGSSYSP+TS ++LSVQQ++++LLKES RRA+SLKL+RLVA+NHL
Sbjct: 416 NLLSEMGIASTSGVLGSSYSPVTSTASSLSVQQRVYILLKESLRRADSLKLRRLVASNHL 475
Query: 479 AMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESSTMTTDGAFS 538
AMAKF+L HVQRPLLSFGPK +MR +TCP +VCKE+RL +HLISDF SESSTMT DG+ S
Sbjct: 476 AMAKFELMHVQRPLLSFGPKASMRHKTCPVSVCKEIRLGAHLISDFSSESSTMTIDGSLS 535
Query: 539 TSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAY 598
++WLK+LQKP G V++ ++ S K S FQ C SIPGSV QL+G+SYLLRAT+WE Y
Sbjct: 536 SAWLKDLQKPWGPPVISPDSGSRKSSTFFQLCDHLVSIPGSVSQLIGASYLLRATSWELY 595
Query: 599 GSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSV 658
GSAP+ R+NTL+YAT F D SS SDA LA++KLIQHLA++KGYK+AF+ALK+AEEKFL+V
Sbjct: 596 GSAPMARMNTLVYATLFGDSSSSSDAELAYLKLIQHLALYKGYKDAFAALKVAEEKFLTV 655
Query: 659 SKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL 718
SKS++LLLKLQLLHER+LH G+LKLAQ++C+ELG +AS+ GVDM+LK EASLR ARTLL
Sbjct: 656 SKSKVLLLKLQLLHERALHCGNLKLAQRICNELGGLASTAMGVDMELKVEASLREARTLL 715
Query: 719 AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778
AA Q+S+AA VAHSLFC C+KFNLQ+E ASVLLLLAEIHKKSGNAVLG+PYALAS+SFCQ
Sbjct: 716 AAKQYSQAANVAHSLFCTCHKFNLQIEKASVLLLLAEIHKKSGNAVLGLPYALASISFCQ 775
Query: 779 LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKC 838
NLDLLKASATLTLAELWL G NH K A +L+ A P+ILGHGGLELRARA+I EA C
Sbjct: 776 SFNLDLLKASATLTLAELWLGLGSNHTKRALDLLHGAFPMILGHGGLELRARAYIFEANC 835
Query: 839 LLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAA 898
LSDPS SVS + + VLD LRQAS+ LQ LE HELAAEA YL+A+V+DKLGRL EREEAA
Sbjct: 836 YLSDPSSSVSTDSDTVLDSLRQASDGLQALEYHELAAEASYLMAMVYDKLGRLDEREEAA 895
Query: 899 ALFKEYVLALEN 910
+LFK++++ALEN
Sbjct: 896 SLFKKHIIALEN 907
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6692677|gb|AAF24811.1|AC007592_4 F12K11.7 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1024 bits (2647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/910 (60%), Positives = 666/910 (73%), Gaps = 100/910 (10%)
Query: 1 MAGILKPPGAFAVTPHKVSVCILIQMYAPPAMMSVPFPFSSVAQHNRFGLYLFALTKSCE 60
MAG+ + GAFAVTPHK+SVCIL+Q+YAP A MS+PFPFSSVAQHNR GLYL +LTKSC+
Sbjct: 1 MAGLTRTAGAFAVTPHKISVCILLQIYAPSAQMSLPFPFSSVAQHNRLGLYLLSLTKSCD 60
Query: 61 DILEPKLDELINQLREIGDVLYQWLTDQLISRLSSLSSPDDLFNLFSDLRAILGGTDLSA 120
DI EPKL++LINQLRE+G+ + WLTD L +R SSL+SPDDL N F+D+R ILG D
Sbjct: 61 DIFEPKLEKLINQLREVGEEMDAWLTDHLTNRFSSLASPDDLLNFFNDMRGILGSLDSGV 120
Query: 121 VDDEQVVLDPNSNLGMFVRRCLLAFNLLCFEGVCHLLTSIGIYCKEALSSCSAYELPCLD 180
V D+Q++LDPNSNLGMFVRRC+LAFNLL FEGVCHL +SI YCKEA SS + + P
Sbjct: 121 VQDDQIILDPNSNLGMFVRRCILAFNLLSFEGVCHLFSSIEDYCKEAHSSFAQFGAP--- 177
Query: 181 DSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVSA 240
+N LE+L +Y+ MD+EN +K +EIE +K AS V FHL
Sbjct: 178 --NNNLESLIQYDQMDMENYAMDKPTEEIEFQKTASGIVPFHL----------------- 218
Query: 241 VSKSQGGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKHGSSFS 300
H P+ M+ + I N ++ +H +
Sbjct: 219 -----------------HTPDSLMKATEGIPYVKSEVNHSFSALIL-----TSRHATM-- 254
Query: 301 LNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQP 360
+VHFLRYLN L+ DDYFAAL+NL RYFDYS
Sbjct: 255 -------------------QVHFLRYLNKLHSDDYFAALDNLLRYFDYSM---------- 285
Query: 361 SIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNL 420
+GRYEI LLCLGMMHF FGHP AL+VLTEAV +SQQ SNDTCLAYTLAA+SNL
Sbjct: 286 ------YGRYEIGLLCLGMMHFRFGHPNLALEVLTEAVRVSQQLSNDTCLAYTLAAMSNL 339
Query: 421 LSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAM 480
LSE+GI++T+G+LGSSYSP+TS ++LSVQQ++++LLKES RRA+SLKL+RLVA+NHLAM
Sbjct: 340 LSEMGIASTSGVLGSSYSPVTSTASSLSVQQRVYILLKESLRRADSLKLRRLVASNHLAM 399
Query: 481 AKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESSTMTTDGAFSTS 540
AKF+L + P C+E+RL +HLISDF SESSTMT DG+ S++
Sbjct: 400 AKFELMFLNIP-------------------CQEIRLGAHLISDFSSESSTMTIDGSLSSA 440
Query: 541 WLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAYGS 600
WLK+LQKP G V++ ++ S K S FQ C SIPGSV QL+G+SYLLRAT+WE YGS
Sbjct: 441 WLKDLQKPWGPPVISPDSGSRKSSTFFQLCDHLVSIPGSVSQLIGASYLLRATSWELYGS 500
Query: 601 APLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK 660
AP+ R+NTL+YAT F D SS SDA LA++KLIQHLA++KGYK+AF+ALK+AEEKFL+VSK
Sbjct: 501 APMARMNTLVYATLFGDSSSSSDAELAYLKLIQHLALYKGYKDAFAALKVAEEKFLTVSK 560
Query: 661 SRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAA 720
S++LLLKLQLLHER+LH G+LKLAQ++C+ELG +AS+ GVDM+LK EASLR ARTLLAA
Sbjct: 561 SKVLLLKLQLLHERALHCGNLKLAQRICNELGGLASTAMGVDMELKVEASLREARTLLAA 620
Query: 721 NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780
Q+S+AA VAHSLFC C+KFNLQ+E ASVLLLLAEIHKKSGNAVLG+PYALAS+SFCQ
Sbjct: 621 KQYSQAANVAHSLFCTCHKFNLQIEKASVLLLLAEIHKKSGNAVLGLPYALASISFCQSF 680
Query: 781 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLL 840
NLDLLKASATLTLAELWL G NH K A +L+ A P+ILGHGGLELRARA+I EA C L
Sbjct: 681 NLDLLKASATLTLAELWLGLGSNHTKRALDLLHGAFPMILGHGGLELRARAYIFEANCYL 740
Query: 841 SDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAAL 900
SDPS SVS + + VLD LRQAS+ELQ LE HELAAEA YL+A+V+DKLGRL EREEAA+L
Sbjct: 741 SDPSSSVSTDSDTVLDSLRQASDELQALEYHELAAEASYLMAMVYDKLGRLDEREEAASL 800
Query: 901 FKEYVLALEN 910
FK++++ALEN
Sbjct: 801 FKKHIIALEN 810
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222617516|gb|EEE53648.1| hypothetical protein OsJ_36942 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/920 (56%), Positives = 669/920 (72%), Gaps = 50/920 (5%)
Query: 13 VTPHKVSVCILIQMYAPPAMMSV-----PFPFSSVAQHNRFGLYLFALTKSCEDILEPKL 67
+TPHK+++C L+Q++APP V PFPF SVA HNR GL+LFALT+SCED EP L
Sbjct: 27 LTPHKLALCHLVQVFAPPPQAGVSAPALPFPFESVAHHNRLGLFLFALTRSCEDFREPPL 86
Query: 68 DELINQLREIGDVLYQWLTDQLISRLSSLSSPDDLFNLFSDLRAILGGTDLSAVDDEQVV 127
+EL+ QL+ + ++ WL +QL S LS+L+SPDDLFN F LR +L + + V+DE
Sbjct: 87 EELLRQLKAVDALVNGWLCEQLTSTLSALTSPDDLFNFFDKLRGVLSAPEGANVEDE--F 144
Query: 128 LDPNSNLGMFVRRCLLAFNLLCFEGVCHLLTSIGIYCKEALSSCSAYELPCLDDSSNELE 187
LDPNS LG+F+R C+L+FN + FEGVCHLL ++ YC A +S Y+L +D ++E+E
Sbjct: 145 LDPNSQLGVFLRCCILSFNTMTFEGVCHLLANLVEYCNSADTS---YDLAEDEDFNSEME 201
Query: 188 ALSEY--ENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVSAVSKSQ 245
+S + NM + + VF+K N+ R + S +HAP +L E
Sbjct: 202 -MSNFMDTNMHVRDGVFDKYNQGYAPRSHMVDSSSSLVHAPASLHDFEE----------- 249
Query: 246 GGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKHGSSFSLNAFE 305
+ + D++ LR+ WQ++ YL +QAD +EK SS LN+F
Sbjct: 250 ---------------ANMFKADDNLGPTCLRSRWQLEAYLNQQADILEKDPSSVPLNSFN 294
Query: 306 LILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCN 365
+ QLQKLAPELHRV FL+YLN+L HDDY AAL+NLHRYFDYSAG +G F++ +
Sbjct: 295 ATMSQLQKLAPELHRVQFLQYLNALTHDDYVAALDNLHRYFDYSAGMQGL-FSRTASPFQ 353
Query: 366 SF--GRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSE 423
G+YE ALLCLG +H +FGHPK+AL+ TEAV +SQ +++D+CLAY L AISNLLS+
Sbjct: 354 DIIVGKYESALLCLGNLHCYFGHPKKALEAFTEAVRVSQMNNDDSCLAYILGAISNLLSK 413
Query: 424 IGISTTTGILGSSYSPITSIG--TTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAMA 481
IG+S+T G +GS YS +IG T LS+QQQL VLLK S +RA++LKL L++ +HL++A
Sbjct: 414 IGMSSTVGTIGSPYSLGNNIGLGTPLSIQQQLLVLLKRSLKRADTLKLTSLLSFDHLSLA 473
Query: 482 KFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESSTMTTD-GAFSTS 540
KFDL HVQRPL+SFGP + +LRTCP +VCK LRL+S +++DF ++ + + D G+FSTS
Sbjct: 474 KFDLKHVQRPLVSFGPNASTKLRTCPADVCKNLRLSSRVLTDFGTDGLSASNDNGSFSTS 533
Query: 541 WLKNLQKPMGSLVLTQENVSGK----DSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWE 596
WL+NL S + + SGK D + F F AQPS IP SVLQL GS+YLLRATAWE
Sbjct: 534 WLRNLSAASNSWCSSSKK-SGKLLTNDFDNFHFHAQPSPIPASVLQLAGSAYLLRATAWE 592
Query: 597 AYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 656
YGSAP+ R+N+L+YATCF+D +S S+ +LA+VKLIQHLA FKGY AFSALK+AEEKF
Sbjct: 593 HYGSAPMVRMNSLVYATCFADAASSSELSLAYVKLIQHLATFKGYSAAFSALKLAEEKFP 652
Query: 657 SVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHART 716
+ S I LLK+QLLHER+LHRGHLK+AQ++CDE V++SSV+GVD++LKTEA LRHART
Sbjct: 653 LSANSHIQLLKMQLLHERALHRGHLKVAQQICDEFAVLSSSVSGVDIELKTEARLRHART 712
Query: 717 LLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776
LLAA QFS+AA VA+SLF CYK+N+QVENASVLLLLAEI K S NAVLG+PYALAS SF
Sbjct: 713 LLAAKQFSQAANVANSLFSTCYKYNMQVENASVLLLLAEIQKNSDNAVLGLPYALASQSF 772
Query: 777 CQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEA 836
C+ NLDLL+ASATLTL ELWL+ G HAK A +L+ Q+LP+ILGHGGLELRARA I A
Sbjct: 773 CKSFNLDLLEASATLTLTELWLALGSTHAKRALSLVCQSLPMILGHGGLELRARAHIVLA 832
Query: 837 KCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896
KC LSDP FSVS++P AVLDPL QA+E+L+VLE HE+AAEA+YL A+V++ LG+L EREE
Sbjct: 833 KCYLSDPKFSVSEDPSAVLDPLNQAAEDLEVLEYHEMAAEAYYLKAMVYNNLGKLDEREE 892
Query: 897 AAALFKEYVLALENENRQDE 916
AAA FKE+ LALEN +++
Sbjct: 893 AAASFKEHTLALENPYNEED 912
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218187288|gb|EEC69715.1| hypothetical protein OsI_39198 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/920 (55%), Positives = 665/920 (72%), Gaps = 55/920 (5%)
Query: 13 VTPHKVSVCILIQMYAPPAMMSV-----PFPFSSVAQHNRFGLYLFALTKSCEDILEPKL 67
+TPHK+++C L+Q++APP V PFPF SVA HNR GL+LFALT+SCED EP L
Sbjct: 27 LTPHKLALCHLVQVFAPPPQAGVSAPALPFPFESVAHHNRLGLFLFALTRSCEDFREPPL 86
Query: 68 DELINQLREIGDVLYQWLTDQLISRLSSLSSPDDLFNLFSDLRAILGGTDLSAVDDEQVV 127
+EL+ QL+ + ++ WL +QL S LS+L+SPDDLFN F LR +L + + V+DE
Sbjct: 87 EELLRQLKAVDALVNGWLCEQLTSTLSALTSPDDLFNFFDKLRGVLSAPEGANVEDE--F 144
Query: 128 LDPNSNLGMFVRRCLLAFNLLCFEGVCHLLTSIGIYCKEALSSCSAYELPCLDDSSNELE 187
LDPNS LG+F+R C+L+FN + FEGVCHLL ++ YC A +S Y+L +D ++E+E
Sbjct: 145 LDPNSQLGVFLRCCILSFNTMTFEGVCHLLANLVEYCNSADTS---YDLAEDEDFNSEME 201
Query: 188 ALSEY--ENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVSAVSKSQ 245
+S + NM + + VF+K N+ R + S +HAP +L E
Sbjct: 202 -MSNFMDTNMHVRDGVFDKYNQGYAPRSHMVDSSSSLVHAPASLHDFEE----------- 249
Query: 246 GGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKHGSSFSLNAFE 305
+ + D++ LR+ WQ++ YL +QAD +EK SS LN+F
Sbjct: 250 ---------------ANMFKADDNLGPTCLRSRWQLEAYLNQQADILEKDPSSVPLNSFN 294
Query: 306 LILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCN 365
+ QLQKLAPELHR YLN+L HDDY AAL+NLHRYFDYSAG +G F++ +
Sbjct: 295 ATMSQLQKLAPELHR-----YLNALTHDDYVAALDNLHRYFDYSAGMQGL-FSRTASPFQ 348
Query: 366 SF--GRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSE 423
G+YE ALLCLG +H +FGHPK+AL+ TEAV +SQ +++D+CLAY L AISNLLS+
Sbjct: 349 DIIVGKYESALLCLGNLHCYFGHPKKALEAFTEAVRVSQMNNDDSCLAYILGAISNLLSK 408
Query: 424 IGISTTTGILGSSYSPITSIG--TTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAMA 481
IG+S+T G +GS YS +IG T LS+QQQL VLLK S +RA++LKL L++ +HL++A
Sbjct: 409 IGMSSTVGTIGSPYSLGNNIGLGTPLSIQQQLLVLLKRSLKRADTLKLTSLLSFDHLSLA 468
Query: 482 KFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESSTMTTD-GAFSTS 540
KFDL HVQRPL+SFGP + +LRTCP +VCK LRL+S +++DF ++ + + D G+FSTS
Sbjct: 469 KFDLKHVQRPLVSFGPNASTKLRTCPADVCKNLRLSSRVLTDFGTDGLSASNDNGSFSTS 528
Query: 541 WLKNLQKPMGSLVLTQENVSGK----DSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWE 596
WL+NL S + + SGK D + F F AQPS IP SVLQL GS+YLLRATAWE
Sbjct: 529 WLRNLSAASNSWCSSSKK-SGKLLTNDFDNFHFHAQPSPIPASVLQLAGSAYLLRATAWE 587
Query: 597 AYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 656
YGSAP+ R+N+L+YATCF+D +S S+ +LA+VKLIQHLA FKGY AFSALK+AEEKF
Sbjct: 588 HYGSAPMVRMNSLVYATCFADAASSSELSLAYVKLIQHLATFKGYSAAFSALKLAEEKFP 647
Query: 657 SVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHART 716
+ S I LLK+QLLHER+LHRGHLK+AQ++CDE V++SSV+GVD++LKTEA LRHART
Sbjct: 648 LSANSHIQLLKMQLLHERALHRGHLKVAQQICDEFAVLSSSVSGVDIELKTEARLRHART 707
Query: 717 LLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776
LLAA QFS+AA VA+SLF CYK+N+QVENASVLLLLAEI K S NAVLG+PYALAS SF
Sbjct: 708 LLAAKQFSQAANVANSLFSTCYKYNMQVENASVLLLLAEIQKNSDNAVLGLPYALASQSF 767
Query: 777 CQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEA 836
C+ NLDLL+ASATLTL ELWL+ G HAK A +L+ Q+LP+ILGHGGLELRARA I A
Sbjct: 768 CKSFNLDLLEASATLTLTELWLALGSTHAKRALSLVCQSLPMILGHGGLELRARAHIVLA 827
Query: 837 KCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896
KC LSDP FSVS++P AVLDPL QA+E+L+VLE HE+AAEA+YL A+V++ LG+L EREE
Sbjct: 828 KCYLSDPKFSVSEDPSAVLDPLNQAAEDLEVLEHHEMAAEAYYLKAMVYNNLGKLDEREE 887
Query: 897 AAALFKEYVLALENENRQDE 916
AAA FKE+ LALEN +++
Sbjct: 888 AAASFKEHTLALENPYNEED 907
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 924 | ||||||
| TAIR|locus:2009150 | 916 | AT1G06590 [Arabidopsis thalian | 0.979 | 0.987 | 0.634 | 4.4e-306 | |
| UNIPROTKB|E2R4S0 | 755 | ANAPC5 "Uncharacterized protei | 0.351 | 0.430 | 0.243 | 4.3e-20 | |
| UNIPROTKB|G3V655 | 740 | Anapc5 "Anaphase-promoting com | 0.233 | 0.291 | 0.292 | 1.1e-19 | |
| UNIPROTKB|Q9UJX4 | 755 | ANAPC5 "Anaphase-promoting com | 0.262 | 0.321 | 0.273 | 1.2e-19 | |
| UNIPROTKB|Q5RE52 | 755 | ANAPC5 "Anaphase-promoting com | 0.262 | 0.321 | 0.273 | 1.2e-19 | |
| MGI|MGI:1929722 | 740 | Anapc5 "anaphase-promoting com | 0.233 | 0.291 | 0.292 | 3.6e-19 | |
| RGD|1306125 | 727 | Anapc5 "anaphase-promoting com | 0.156 | 0.199 | 0.327 | 1.9e-18 | |
| UNIPROTKB|F1RNP8 | 755 | ANAPC5 "Uncharacterized protei | 0.262 | 0.321 | 0.273 | 2e-18 | |
| UNIPROTKB|E1BK11 | 755 | ANAPC5 "Uncharacterized protei | 0.262 | 0.321 | 0.269 | 4.2e-18 | |
| DICTYBASE|DDB_G0280113 | 1017 | anapc5 "anaphase promoting com | 0.112 | 0.102 | 0.283 | 7.7e-16 |
| TAIR|locus:2009150 AT1G06590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2937 (1038.9 bits), Expect = 4.4e-306, P = 4.4e-306
Identities = 579/912 (63%), Positives = 697/912 (76%)
Query: 1 MAGILKPPGAFAVTPHKVSVCILIQMYAPPAMMSVPFPFSSVAQHNRFGLYLFALTKSCE 60
MAG+ + GAFAVTPHK+SVCIL+Q+YAP A MS+PFPFSSVAQHNR GLYL +LTKSC+
Sbjct: 1 MAGLTRTAGAFAVTPHKISVCILLQIYAPSAQMSLPFPFSSVAQHNRLGLYLLSLTKSCD 60
Query: 61 DILEPKLDELINQLREIGDVLYQWLTXXXXXXXXXXXXXXXXXXXXXXXRAILGGTDLSA 120
DI EPKL++LINQLRE+G+ + WLT R ILG D
Sbjct: 61 DIFEPKLEKLINQLREVGEEMDAWLTDHLTNRFSSLASPDDLLNFFNDMRGILGSLDSGV 120
Query: 121 VDDEQVVLDPNSNLGMFVRRCLLAFNLLCFEGVCHLLTSIGIYCKEALSSCSAYELPCLD 180
V D+Q++LDPNSNLGMFVRRC+LAFNLL FEGVCHL +SI YCKEA SS + + P
Sbjct: 121 VQDDQIILDPNSNLGMFVRRCILAFNLLSFEGVCHLFSSIEDYCKEAHSSFAQFGAP--- 177
Query: 181 DSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVSA 240
+N LE+L +Y+ MD+EN +K +EIE +K AS V FHLH P +L E + +
Sbjct: 178 --NNNLESLIQYDQMDMENYAMDKPTEEIEFQKTASGIVPFHLHTPDSLMKATEGLLHNR 235
Query: 241 VSKSQGGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKHGSS-- 298
S+ K EA+P A A + E FLRTN Q+QG+LMEQADAIE HGSS
Sbjct: 236 KETSRTSKKDTEATPVARASTSTLEESLVDESLFLRTNLQIQGFLMEQADAIEIHGSSSS 295
Query: 299 FSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFA 358
FS ++ E L QLQKLAPELHRVHFLRYLN L+ DDYFAAL+NL RYFDYSAGTEGFD
Sbjct: 296 FSSSSIESFLDQLQKLAPELHRVHFLRYLNKLHSDDYFAALDNLLRYFDYSAGTEGFDLV 355
Query: 359 QPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAIS 418
PS GC+ +GRYEI LLCLGMMHF FGHP AL+VLTEAV +SQQ SNDTCLAYTLAA+S
Sbjct: 356 PPSTGCSMYGRYEIGLLCLGMMHFRFGHPNLALEVLTEAVRVSQQLSNDTCLAYTLAAMS 415
Query: 419 NLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHL 478
NLLSE+GI++T+G+LGSSYSP+TS ++LSVQQ++++LLKES RRA+SLKL+RLVA+NHL
Sbjct: 416 NLLSEMGIASTSGVLGSSYSPVTSTASSLSVQQRVYILLKESLRRADSLKLRRLVASNHL 475
Query: 479 AMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESSTMTTDGAFS 538
AMAKF+L HVQRPLLSFGPK +MR +TCP +VCKE+RL +HLISDF SESSTMT DG+ S
Sbjct: 476 AMAKFELMHVQRPLLSFGPKASMRHKTCPVSVCKEIRLGAHLISDFSSESSTMTIDGSLS 535
Query: 539 TSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAY 598
++WLK+LQKP G V++ ++ S K S FQ C SIPGSV QL+G+SYLLRAT+WE Y
Sbjct: 536 SAWLKDLQKPWGPPVISPDSGSRKSSTFFQLCDHLVSIPGSVSQLIGASYLLRATSWELY 595
Query: 599 GSAPLTRVNTLIYATCFXXXXXXXXXXXXHVKLIQHLAVFKGYKEAFSALKIAEEKFLSV 658
GSAP+ R+NTL+YAT F ++KLIQHLA++KGYK+AF+ALK+AEEKFL+V
Sbjct: 596 GSAPMARMNTLVYATLFGDSSSSSDAELAYLKLIQHLALYKGYKDAFAALKVAEEKFLTV 655
Query: 659 SKSRIXXXXXXXXHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL 718
SKS++ HER+LH G+LKLAQ++C+ELG +AS+ GVDM+LK EASLR ARTLL
Sbjct: 656 SKSKVLLLKLQLLHERALHCGNLKLAQRICNELGGLASTAMGVDMELKVEASLREARTLL 715
Query: 719 AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778
AA Q+S+AA VAHSLFC C+KFNLQ+E ASVLLLLAEIHKKSGNAVLG+PYALAS+SFCQ
Sbjct: 716 AAKQYSQAANVAHSLFCTCHKFNLQIEKASVLLLLAEIHKKSGNAVLGLPYALASISFCQ 775
Query: 779 LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKC 838
NLDLLKASATLTLAELWL G NH K A +L+ A P+ILGHGGLELRARA+I EA C
Sbjct: 776 SFNLDLLKASATLTLAELWLGLGSNHTKRALDLLHGAFPMILGHGGLELRARAYIFEANC 835
Query: 839 LLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGXXXXXXXXX 898
LSDPS SVS + + VLD LRQAS+ELQ LE HELAAEA YL+A+V+DKLG
Sbjct: 836 YLSDPSSSVSTDSDTVLDSLRQASDELQALEYHELAAEASYLMAMVYDKLGRLDEREEAA 895
Query: 899 XXFKEYVLALEN 910
FK++++ALEN
Sbjct: 896 SLFKKHIIALEN 907
|
|
| UNIPROTKB|E2R4S0 ANAPC5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 160 (61.4 bits), Expect = 4.3e-20, Sum P(4) = 4.3e-20
Identities = 87/357 (24%), Positives = 142/357 (39%)
Query: 551 SLVLTQENVSGKDSNAFQFCAQPSSI---PGSVLQLVGSSYLLRATAWEAYGSAP--LTR 605
SLV Q +GK +N + S + S+ +L+ S + W YG + L +
Sbjct: 383 SLV-QQRAFAGKTANKLMDALKDSDLLHWKHSLSELIDISIAQKTAIWRLYGRSTMALQQ 441
Query: 606 VNTLIYATCFXXXXXXXXXXXXHVKLIQ--HLAVFKGYKEAFSA----LKIAEEKFLSVS 659
L+ + HLA + F+A LK +E+F S
Sbjct: 442 AQMLLSMNSLESVNAGVQQNNTESFAVALCHLAELHAEQGCFAAASEVLKHLKERFPPNS 501
Query: 660 K-SRIXXXXXXXXH-ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTL 717
+ +++ +R+++ G LA D L VTG+ E R A L
Sbjct: 502 QHAQLWMLCDQKIQFDRAMNDGKYHLA----DSL------VTGITALNSIEGVYRKAIVL 551
Query: 718 LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777
A NQ SEA + L C K SVLL +AE++ +S + + +P L +L+
Sbjct: 552 QAQNQMSEAHKLLQKLLVHCQKIRNTEMVISVLLSVAELYWRSSSPTIALPVLLQALALS 611
Query: 778 QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAK 837
+ L L + L LA L G + A +L+ A+ IL G + + RA AK
Sbjct: 612 KEYRLQYLASETVLNLAFAQLILGI--PEQALSLLHMAIEPILADGAVLDKGRAMFLVAK 669
Query: 838 CLLS-----DPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLG 889
C ++ DP ++ EA ++ L +A ++ E + Y A ++ LG
Sbjct: 670 CQVASAASYDP-LKKAEALEAAIENLNEAKNYFAKVDCKEQIRDVVYFQARLYHTLG 725
|
|
| UNIPROTKB|G3V655 Anapc5 "Anaphase-promoting complex subunit 5 (Predicted)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 165 (63.1 bits), Expect = 1.1e-19, Sum P(4) = 1.1e-19
Identities = 71/243 (29%), Positives = 112/243 (46%)
Query: 263 AMREFD-SISGAFLRTNWQMQGYLMEQADAIEKHGSSFSLNAFELI--LRQLQKLAPELH 319
++RE + S SG + Q + +L +QA A+ K+ + +L L L L K P+
Sbjct: 180 SVREEEVSCSGPLSQK--QAEFFLSQQA-ALLKNDETKALTPASLQKELNNLLKFNPDFA 236
Query: 320 RVHFLRYLNSLYHDDYFAALENLHRYFD--YSAGTEGFDFAQPSIGCNSFGR-YEIALLC 376
H+L YLN+L D F++ +L YFD G EG S G +GR A L
Sbjct: 237 EAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAEG-----KSNGEEGYGRSLRYAALN 291
Query: 377 LGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLA---------AISNLLSEIGIS 427
L +H FGH +QA L EA+ ++Q+ ++ CL + L+ A S +L E +
Sbjct: 292 LAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLYVLGQKRADSYVLLEHSVK 351
Query: 428 TTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDLTH 487
G Y + S+G VQQ+ F K + + ++LK L+ H D++
Sbjct: 352 KAVHF-GLPY--LASLGIQSLVQQRAFAG-KTANKLMDALKDSDLLHWKHSLSELIDISI 407
Query: 488 VQR 490
Q+
Sbjct: 408 AQK 410
|
|
| UNIPROTKB|Q9UJX4 ANAPC5 "Anaphase-promoting complex subunit 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 164 (62.8 bits), Expect = 1.2e-19, Sum P(3) = 1.2e-19
Identities = 74/271 (27%), Positives = 121/271 (44%)
Query: 233 VEDIKVSAVSKSQGGDKCREASPSAHAPNDAMREFD-SISGAFLRTNWQMQGYLMEQADA 291
VED + S+ +G K + ++RE + S SG + Q + +L +QA
Sbjct: 170 VEDADMELTSRDEGERKMEKEELDV-----SVREEEVSCSGPLSQK--QAEFFLSQQASL 222
Query: 292 IEKHGSSFSLNAFELI--LRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYS 349
+ K+ + +L L L L K P+ H+L YLN+L D F++ +L YFD
Sbjct: 223 L-KNDETKALTPASLQKELNNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRL 281
Query: 350 AGTEGFDFAQPSIGCNSFGR-YEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDT 408
T G + S G +GR A L L +H FGH +QA L EA+ ++Q+ ++
Sbjct: 282 ILT-GAE--SKSNGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHV 338
Query: 409 CLAYTLAAI---------SNLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKE 459
CL + L+ + S +L E + G Y + S+G VQQ+ F K
Sbjct: 339 CLQHCLSWLYVLGQKRSDSYVLLEHSVKKAVHF-GLPY--LASLGIQSLVQQRAFAG-KT 394
Query: 460 SFRRAESLKLKRLVAANHLAMAKFDLTHVQR 490
+ + ++LK L+ H D++ Q+
Sbjct: 395 ANKLMDALKDSDLLHWKHSLSELIDISIAQK 425
|
|
| UNIPROTKB|Q5RE52 ANAPC5 "Anaphase-promoting complex subunit 5" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 164 (62.8 bits), Expect = 1.2e-19, Sum P(3) = 1.2e-19
Identities = 74/271 (27%), Positives = 121/271 (44%)
Query: 233 VEDIKVSAVSKSQGGDKCREASPSAHAPNDAMREFD-SISGAFLRTNWQMQGYLMEQADA 291
VED + S+ +G K + ++RE + S SG + Q + +L +QA
Sbjct: 170 VEDADMELTSRDEGERKMEKEELDV-----SVREEEVSCSGPLSQK--QAEFFLSQQASL 222
Query: 292 IEKHGSSFSLNAFELI--LRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYS 349
+ K+ + +L L L L K P+ H+L YLN+L D F++ +L YFD
Sbjct: 223 L-KNDETKALTPASLQKELNNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRL 281
Query: 350 AGTEGFDFAQPSIGCNSFGR-YEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDT 408
T G + S G +GR A L L +H FGH +QA L EA+ ++Q+ ++
Sbjct: 282 ILT-GAE--SKSNGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHV 338
Query: 409 CLAYTLAAI---------SNLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKE 459
CL + L+ + S +L E + G Y + S+G VQQ+ F K
Sbjct: 339 CLQHCLSWLYVLGQKRSDSYVLLEHSVKKAVHF-GLPY--LASLGIQSLVQQRAFAG-KT 394
Query: 460 SFRRAESLKLKRLVAANHLAMAKFDLTHVQR 490
+ + ++LK L+ H D++ Q+
Sbjct: 395 ANKLMDALKDSDLLHWKHSLSELIDISIAQK 425
|
|
| MGI|MGI:1929722 Anapc5 "anaphase-promoting complex subunit 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 165 (63.1 bits), Expect = 3.6e-19, Sum P(4) = 3.6e-19
Identities = 71/243 (29%), Positives = 112/243 (46%)
Query: 263 AMREFD-SISGAFLRTNWQMQGYLMEQADAIEKHGSSFSLNAFELI--LRQLQKLAPELH 319
++RE + S SG + Q + +L +QA A+ K+ + +L L L L K P+
Sbjct: 180 SVREEEVSCSGPLSQK--QAEFFLSQQA-ALLKNDETKALTPASLQKELNNLLKFNPDFA 236
Query: 320 RVHFLRYLNSLYHDDYFAALENLHRYFD--YSAGTEGFDFAQPSIGCNSFGR-YEIALLC 376
H+L YLN+L D F++ +L YFD G EG S G +GR A L
Sbjct: 237 EAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAEG-----KSNGEEGYGRSLRYAALN 291
Query: 377 LGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLA---------AISNLLSEIGIS 427
L +H FGH +QA L EA+ ++Q+ ++ CL + L+ A S +L E +
Sbjct: 292 LAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLYVLGQKRADSYVLLEHSVK 351
Query: 428 TTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDLTH 487
G Y + S+G VQQ+ F K + + ++LK L+ H D++
Sbjct: 352 KAVHF-GLPY--LASLGIQSLVQQRAFAG-KTANKLMDALKDSDLLHWKHSLSELIDISI 407
Query: 488 VQR 490
Q+
Sbjct: 408 AQK 410
|
|
| RGD|1306125 Anapc5 "anaphase-promoting complex subunit 5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 156 (60.0 bits), Expect = 1.9e-18, Sum P(4) = 1.9e-18
Identities = 52/159 (32%), Positives = 80/159 (50%)
Query: 263 AMREFD-SISGAFLRTNWQMQGYLMEQADAIEKHGSSFSLNAFELI--LRQLQKLAPELH 319
++RE + S SG + Q + +L +QA A+ K+ + +L L L L K P+
Sbjct: 180 SVREEEVSCSGPLSQK--QAEFFLSQQA-ALLKNDETKALTPASLQKELNNLLKFNPDFA 236
Query: 320 RVHFLRYLNSLYHDDYFAALENLHRYFD--YSAGTEGFDFAQPSIGCNSFGR-YEIALLC 376
H+L YLN+L D F++ +L YFD G EG S G +GR A L
Sbjct: 237 EAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAEG-----KSNGEEGYGRSLRYAALN 291
Query: 377 LGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLA 415
L +H FGH +QA L EA+ ++Q+ ++ CL + L+
Sbjct: 292 LAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLS 330
|
|
| UNIPROTKB|F1RNP8 ANAPC5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 164 (62.8 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 74/271 (27%), Positives = 121/271 (44%)
Query: 233 VEDIKVSAVSKSQGGDKCREASPSAHAPNDAMREFD-SISGAFLRTNWQMQGYLMEQADA 291
VED + S+ +G K + ++RE + S SG + Q + +L +QA
Sbjct: 170 VEDADMELASREEGERKMEKEELDV-----SIREEEVSCSGPLSQK--QAEFFLSQQASL 222
Query: 292 IEKHGSSFSLNAFELI--LRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYS 349
+ K+ + +L L L L K P+ H+L YLN+L D F++ +L YFD
Sbjct: 223 L-KNDETKALTPASLQKELNNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRL 281
Query: 350 AGTEGFDFAQPSIGCNSFGR-YEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDT 408
T G + S G +GR A L L +H FGH +QA L EA+ ++Q+ ++
Sbjct: 282 ILT-GAE--SKSNGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHV 338
Query: 409 CLAYTLAAI---------SNLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKE 459
CL + L+ + S +L E + G Y + S+G VQQ+ F K
Sbjct: 339 CLQHCLSWLYVLGQKRSDSYVLLEHSVKKAVHF-GLPY--LASLGIQSLVQQRAFAG-KT 394
Query: 460 SFRRAESLKLKRLVAANHLAMAKFDLTHVQR 490
+ + ++LK L+ H D++ Q+
Sbjct: 395 ANKLMDALKDSDLLHWKHSLSELIDISIAQK 425
|
|
| UNIPROTKB|E1BK11 ANAPC5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 161 (61.7 bits), Expect = 4.2e-18, Sum P(3) = 4.2e-18
Identities = 73/271 (26%), Positives = 121/271 (44%)
Query: 233 VEDIKVSAVSKSQGGDKCREASPSAHAPNDAMREFD-SISGAFLRTNWQMQGYLMEQADA 291
+ED + S+ +G K + ++RE + S SG + Q + +L +QA
Sbjct: 170 MEDADMELASREEGERKMEKEELDV-----SIREEEVSCSGPLSQK--QAEFFLSQQASL 222
Query: 292 IEKHGSSFSLNAFELI--LRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYS 349
+ K+ + +L L L L K P+ H+L YLN+L D F++ +L YFD
Sbjct: 223 L-KNDETKALTPASLQKELNNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRL 281
Query: 350 AGTEGFDFAQPSIGCNSFGR-YEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDT 408
T G + S G +GR A L L +H FGH +QA L EA+ ++Q+ ++
Sbjct: 282 ILT-GAE--SKSNGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHV 338
Query: 409 CLAYTLAAI---------SNLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKE 459
CL + L+ + S +L E + G Y + S+G VQQ+ F K
Sbjct: 339 CLQHCLSWLYVLGQKRSDSYVLLEHSVKKAVHF-GLPY--LASLGIQSLVQQRAFAG-KT 394
Query: 460 SFRRAESLKLKRLVAANHLAMAKFDLTHVQR 490
+ + ++LK L+ H D++ Q+
Sbjct: 395 ANKLMDALKDSDLLHWKHSLSELIDISIAQK 425
|
|
| DICTYBASE|DDB_G0280113 anapc5 "anaphase promoting complex subunit 5" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 115 (45.5 bits), Expect = 7.7e-16, Sum P(4) = 7.7e-16
Identities = 32/113 (28%), Positives = 60/113 (53%)
Query: 373 ALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGI 432
A+L L +H+HFGH +++ L EA+ ++Q+ ++ +CLA ++ LL + +
Sbjct: 339 AVLNLVRLHYHFGHYEESYLALREAIRIAQERADHSCLALADHWLARLLKK-------SV 391
Query: 433 LGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDL 485
S S +++ L +LK+S R+ L++ L+A NH A +K+ L
Sbjct: 392 YNSMES--SNLLQYLLASHSDSEILKKSIERSRDLEMPDLLALNHTAFSKYKL 442
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8H1U4 | APC5_ARATH | No assigned EC number | 0.6754 | 0.9794 | 0.9879 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | scaffold_100656.1 | annotation not avaliable (916 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | fgenesh2_kg.2__2169__AT1G78770.1 | annotation not avaliable (543 aa) | • | • | • | 0.689 | |||||
 | scaffold_304179.1 | annotation not avaliable (192 aa) | • | • | 0.678 | ||||||
 | fgenesh2_kg.3__2801__AT2G04660.1 | annotation not avaliable (866 aa) | • | • | 0.677 | ||||||
 | fgenesh2_kg.4__1988__AT2G39090.1 | annotation not avaliable (558 aa) | • | • | 0.641 | ||||||
 | fgenesh2_kg.7__60__AT4G38630.1 | At4g38630-like protein (386 aa) | • | • | 0.512 | ||||||
 | fgenesh2_kg.3__3171__AT2G20000.1 | annotation not avaliable (744 aa) | • | • | • | 0.511 | |||||
 | fgenesh2_kg.5__1167__AT3G48150.1 | annotation not avaliable (579 aa) | • | • | • | 0.497 | |||||
 | fgenesh2_kg.6__485__AT5G05560.1 | annotation not avaliable (1748 aa) | • | • | 0.479 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 924 | |||
| pfam12862 | 91 | pfam12862, Apc5, Anaphase-promoting complex subuni | 1e-27 |
| >gnl|CDD|193336 pfam12862, Apc5, Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 1e-27
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 12/102 (11%)
Query: 322 HFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMH 381
H+L YLN+L DY AL++LHRYFDYS + N Y+ ALL L +H
Sbjct: 1 HYLSYLNALRVGDYQGALDSLHRYFDYSLTS------------NEKSSYQYALLNLASLH 48
Query: 382 FHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSE 423
FGH ++A+ + EA+ L++++ + CL L+ + N L +
Sbjct: 49 ADFGHNEEAIAAIEEAIRLARENKDTACLNLALSWLYNFLKK 90
|
Apc5 is a subunit of the anaphase-promoting complex/cyclosome (APC/C) which is a multisubunit ubiquitin ligase that mediates the proteolysis of cell cycle proteins in mitosis and G1. Apc5, although it does not harbour a classical RNA binding domain, Apc5 binds the poly(A) binding protein (PABP), which directly binds the internal ribosome entry site (IRES) of growth factor 2 mRNA. PABP was found to enhance IRES-mediated translation, whereas Apc5 over-expression counteracted this effect. In addition to its association with the APC/C complex, Apc5 binds much heavier complexes and co-sediments with the ribosomal fraction. The N-terminus of Afi1 serves to stabilise the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC. This region of the Apc5 member proteins carries a TPR-like motif. Length = 91 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 924 | |||
| KOG4322 | 482 | consensus Anaphase-promoting complex (APC), subuni | 100.0 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 99.83 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.71 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.68 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.52 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.48 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.48 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.47 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.44 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.42 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.4 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.4 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.4 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.37 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.36 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.35 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.3 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.29 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.16 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.15 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.13 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.08 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.05 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.04 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.01 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.01 | |
| KOG4322 | 482 | consensus Anaphase-promoting complex (APC), subuni | 98.99 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.93 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.92 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.81 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.78 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 98.75 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.74 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.73 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.72 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.72 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.7 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.64 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.61 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.59 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.58 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.53 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.53 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.49 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.48 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.44 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.43 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.43 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.36 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.35 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.35 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 98.31 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.26 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.25 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.22 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.2 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.19 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.18 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.17 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.16 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 98.1 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.09 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.08 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.05 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.05 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.03 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 98.02 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 97.9 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.88 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.87 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 97.87 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 97.83 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 97.81 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 97.8 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 97.74 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 97.72 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.71 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.69 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.69 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.69 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 97.68 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 97.66 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.65 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 97.63 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 97.63 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.62 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.57 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 97.55 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 97.51 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 97.42 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.42 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.38 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.38 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.36 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.34 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.31 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.28 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.27 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 97.27 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.24 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.22 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.21 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.2 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.19 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.18 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.17 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.15 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.14 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.14 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.1 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.09 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.08 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.04 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.03 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.02 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.02 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 96.98 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 96.97 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 96.97 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.9 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.89 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 96.88 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 96.86 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 96.85 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.84 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 96.83 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.83 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.82 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 96.8 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.77 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 96.73 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.71 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 96.64 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 96.63 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 96.63 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.62 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 96.62 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.62 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.59 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.57 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 96.56 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 96.46 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 96.43 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.36 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 96.34 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 96.3 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 96.28 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.27 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.26 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 96.26 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 96.26 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 96.23 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.18 | |
| PLN02789 | 320 | farnesyltranstransferase | 96.18 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.07 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 96.05 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.03 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 95.97 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 95.96 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 95.94 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 95.89 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.81 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.77 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 95.7 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.67 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.66 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.65 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 95.6 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.52 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 95.47 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 95.45 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 95.45 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.42 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 95.41 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 95.37 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 95.36 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.26 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.24 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.04 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 95.01 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.86 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 94.78 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 94.6 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 94.44 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.43 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.23 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.19 | |
| PLN02789 | 320 | farnesyltranstransferase | 94.15 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 94.08 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 94.02 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 93.88 | |
| PF08626 | 1185 | TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC | 93.84 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 93.76 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 93.7 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 93.69 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.65 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 93.47 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 93.35 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.34 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 93.21 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 92.96 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 92.95 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.94 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 92.88 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.71 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.53 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.47 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.36 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.2 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.15 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 92.06 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.03 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.93 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.85 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.83 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.78 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 91.69 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 91.64 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 91.52 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.52 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.36 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.28 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 91.08 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 91.07 | |
| PF08626 | 1185 | TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC | 90.98 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.93 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 90.66 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 90.65 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 90.4 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 90.14 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 90.09 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 90.08 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 89.85 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 89.82 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 89.76 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 89.76 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.72 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.72 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.6 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 89.53 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 89.45 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 89.37 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.99 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 88.89 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 88.32 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 88.11 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.98 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 87.91 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 87.81 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 87.29 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 87.28 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 87.0 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 86.83 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.82 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.76 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 86.48 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 86.41 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 86.37 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.25 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 86.22 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 86.21 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.99 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.87 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.73 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.99 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 84.73 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 84.67 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 84.37 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 84.27 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 84.13 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 83.37 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 82.71 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 82.66 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 80.74 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 80.52 |
| >KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=348.88 Aligned_cols=462 Identities=24% Similarity=0.192 Sum_probs=402.6
Q ss_pred hHHHHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHCCCchHHHHHHHHhhhhcCcHHHHHHHHHhhhhccCCCCCCC
Q 002424 278 NWQMQGYLMEQADAIEKHG-SSFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFD 356 (924)
Q Consensus 278 ~~~~e~~l~~qi~~l~~~~-~~~p~~~l~~~~~~~~~~~p~~~~~~~l~~L~~~~~~dy~~A~d~Lh~yFD~~~~~~~~~ 356 (924)
++|++.|+..|...++.++ ++.+|-++++.++.+.+..|++. +||+.|.|.+|+.|+.++..+|+++||.+...
T Consensus 18 ~kqa~fF~~~q~~ll~n~elkal~p~~lqk~v~~ll~vlp~~~-p~~l~y~n~lrv~d~~s~l~sL~e~~dr~~l~---- 92 (482)
T KOG4322|consen 18 NKQATFFTPHQLTLLLNIELKALRPIQLQKCVPFLDLVLPYFN-PNDLQYQNLLRVHDITSHLPSLIEEYDRYSLL---- 92 (482)
T ss_pred chhhhhccHHHHHHHHhhhhhccCchhhhcCchHHHHhccccC-hhhhccchhhHHHHHHhhhhHHHHHHHhhhhh----
Confidence 8999999999999999998 79999999999999999999999 99999999999999999999999999998521
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcccCcccCcCCCC
Q 002424 357 FAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSS 436 (924)
Q Consensus 357 r~~~~~~~~~~~~~~yall~la~~h~~fg~~~~A~~~l~Eai~~Aqe~~D~~cl~~~l~wl~~l~~~~~~a~~~~~~g~~ 436 (924)
..+| |+++|+|.+|..||| ..++.|||..|||.+|+.|++++..|.+.+-++.+.
T Consensus 93 ----------eegy-y~~~nla~Lhe~fgh----l~al~eai~~aqe~~dh~~l~~~~~w~i~Lr~~~~~---------- 147 (482)
T KOG4322|consen 93 ----------EEGY-YSLHNLADLHEIFGH----LGALIEGIYDAQEEADHMLLSSSSLWSIFLRKCVVE---------- 147 (482)
T ss_pred ----------hhhH-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHccchhhHhccchHHHHHHhhhhh----------
Confidence 1355 999999999999999 889999999999999999999999999976654431
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccCCCCccCCCcccccccCCchhHHHHHHh
Q 002424 437 YSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRL 516 (924)
Q Consensus 437 ~~~~~~~~~~~~~~~q~l~lL~~~~~ra~e~~~~~L~s~~~l~~ak~~l~~g~~~~~~~g~~~~~~~~~~~a~~~e~l~~ 516 (924)
..+.+++++-++.
T Consensus 148 -------------------seq~Sv~~a~~f~------------------------------------------------ 160 (482)
T KOG4322|consen 148 -------------------SEQFSVEQAVQFF------------------------------------------------ 160 (482)
T ss_pred -------------------HHHHHHHHhhhhh------------------------------------------------
Confidence 1233333333211
Q ss_pred hhhcccccccccccccCCCccchHHhhhccCCCCcchhhhccccCCCccccccccCCCCcchhhhhhhhhHHHHHHHHHH
Q 002424 517 ASHLISDFVSESSTMTTDGAFSTSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWE 596 (924)
Q Consensus 517 ~~~l~~d~~~~~~~~~~~g~~~~~~l~nl~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~l~~l~g~~~~l~a~~W~ 596 (924)
..+|++.+.+++-. ..++ .+|.
T Consensus 161 ----------------------~s~Lq~~~~~~~fq------------------------~~a~------------~~W~ 182 (482)
T KOG4322|consen 161 ----------------------KSFLQYRAPSMDFQ------------------------HEAI------------EFWK 182 (482)
T ss_pred ----------------------HHHHHhhccccCcc------------------------hhhh------------HHHH
Confidence 23444544432200 0111 2999
Q ss_pred hhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCch-HHHHHHHh-hHHHH
Q 002424 597 AYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKS-RILLLKLQ-LLHER 674 (924)
Q Consensus 597 ~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~-~~~~l~l~-l~~~~ 674 (924)
.||...|+.. .++......+++.+|..++.+|-...+...+++ +++||..... ..|++.-+ .....
T Consensus 183 lYGrhemA~~-----------~s~~~llq~al~s~a~~~a~qg~~ql~~v~L~h-Kqrfp~~~~~a~~wml~d~~~v~~~ 250 (482)
T KOG4322|consen 183 IYGRHELANL-----------ASNKTLLQLALGSIAVSRSSQGIEQLTQVQLEH-KQRFPCALPLAMKWMLHDLLEVEEN 250 (482)
T ss_pred HhchhHHHHh-----------hcchhHHHHHHHHHHHHHHhcchHHHHHHHHHH-HHhcCCCcHHHHHHHHHHhHHHHHh
Confidence 9999999982 224557789999999999999999999999999 9999987774 46887633 44478
Q ss_pred HHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Q 002424 675 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLA 754 (924)
Q Consensus 675 al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la 754 (924)
.+..++|..|...+... |.....+..++.+.++.+..++++|.++++.++..|.........+.++..+|
T Consensus 251 ~~~~~~~h~al~~~~g~----------d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~a 320 (482)
T KOG4322|consen 251 NLNTSYYHKALNSWFGG----------DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIA 320 (482)
T ss_pred hhhhhHHHHHHHHhhcc----------hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 88999999887654433 55568899999999999999999999999999999999889999999999999
Q ss_pred HHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHH
Q 002424 755 EIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIA 834 (924)
Q Consensus 755 ~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~ 834 (924)
+++.+.|.+..+++++.+++..+.++.+++.++.+.+.||..|+.+|.+ ++|+.++..++|.|+.+|..+++|++++.
T Consensus 321 e~~~~g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~p--k~Al~lLh~a~h~Il~~GgL~drara~fv 398 (482)
T KOG4322|consen 321 EARESGDTACLNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSP--KAALPLLHTAVHLILVQGGLDDRARAIFV 398 (482)
T ss_pred HHHhcCCCchhhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCCh--HHHHHHHHhhhhHHHhccchhhcceeEEE
Confidence 9999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhccCCC
Q 002424 835 EAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALENENRQ 914 (924)
Q Consensus 835 LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~~~~~~~~~ 914 (924)
.++|+++.+.+...++.+.+.+++++|...|.++++.++..+|.|.+|..|+.+||.++||++|..||+.-..+|+ |+
T Consensus 399 fanC~lA~a~s~~~e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~le~--pr 476 (482)
T KOG4322|consen 399 FANCTLAFALSCANESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRYLEL--PR 476 (482)
T ss_pred EEeeeecchhhhhhhhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCC--cc
Confidence 9999999877666788999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCCCC
Q 002424 915 DEVDPL 920 (924)
Q Consensus 915 ~~~~~~ 920 (924)
+.+.|+
T Consensus 477 ~~l~n~ 482 (482)
T KOG4322|consen 477 WLLGNP 482 (482)
T ss_pred ccccCC
Confidence 988764
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-20 Score=171.79 Aligned_cols=93 Identities=44% Similarity=0.759 Sum_probs=83.7
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 002424 322 HFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLS 401 (924)
Q Consensus 322 ~~l~~L~~~~~~dy~~A~d~Lh~yFD~~~~~~~~~r~~~~~~~~~~~~~~yall~la~~h~~fg~~~~A~~~l~Eai~~A 401 (924)
||++|+++|+.|||++|+|+||+|||+.....+ .+...+++||++|+|.+|..||++++|+.+++|||++|
T Consensus 1 ~~l~~~~~~~~~dy~~A~d~L~~~fD~~~~~~~---------~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 1 HYLRYLNALRSGDYSEALDALHRYFDYAKQSNN---------SSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHHHhhccc---------chhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999874321 01124899999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHHHHHh
Q 002424 402 QQHSNDTCLAYTLAAISNLLSE 423 (924)
Q Consensus 402 qe~~D~~cl~~~l~wl~~l~~~ 423 (924)
|+++|..||++|+.|++++.++
T Consensus 72 re~~D~~~l~~al~~~~~l~~~ 93 (94)
T PF12862_consen 72 RENGDRRCLAYALSWLANLLKK 93 (94)
T ss_pred HHHCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999998754
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-16 Score=169.72 Aligned_cols=272 Identities=14% Similarity=0.055 Sum_probs=240.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH-HHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL-LKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~-l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
...+++.||.+|...++|+.|+++..+=+.+.+..++.-.-+ .+-++ +...-..|+|++|..++.+-+.++++++ |
T Consensus 54 LSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL-GNtlKv~G~fdeA~~cc~rhLd~areLg--D 130 (639)
T KOG1130|consen 54 LSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL-GNTLKVKGAFDEALTCCFRHLDFARELG--D 130 (639)
T ss_pred HHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc-cchhhhhcccchHHHHHHHHhHHHHHHh--H
Confidence 346789999999999999999999888777666666532100 01011 1233468999999999999999999999 9
Q ss_pred cchHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCC
Q 002424 703 MDLKTEASLRHARTLLAANQ--------------------FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN 762 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~--------------------~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~ 762 (924)
+.++..++++++.++.++|+ ++.|.+++.+-|++.+..||+....|+.-.+|..|.-.|+
T Consensus 131 rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGd 210 (639)
T KOG1130|consen 131 RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGD 210 (639)
T ss_pred HHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeecc
Confidence 99999999999999999886 4568888888899999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcC
Q 002424 763 AVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSD 842 (924)
Q Consensus 763 ~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~ 842 (924)
++.|+.....=|.++++.|++--+-+|.-+||..|.-+|.. +.|.+++...+.++.+.|++..+|+..+.||.+|--
T Consensus 211 f~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f--e~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl- 287 (639)
T KOG1130|consen 211 FDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF--ELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL- 287 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc--HhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH-
Confidence 99999999999999999999999999999999999999997 999999999999999999999999999999999887
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 002424 843 PSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVL 906 (924)
Q Consensus 843 ~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~ 906 (924)
..++.+|+.|+.+=+++++.++++.++.++.+-||.+|.++|....+-..+....+..-
T Consensus 288 -----l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 288 -----LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999988777776666543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-15 Score=163.23 Aligned_cols=272 Identities=15% Similarity=0.096 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
|.-+.-=|-.++..|++......++.|.+.-.+ .-...-+|--|+. ..++..++|.+|.++...=+.+++.++ |..
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLG-NAyfyL~DY~kAl~yH~hDltlar~lg--dkl 92 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLG-NAYFYLKDYEKALKYHTHDLTLARLLG--DKL 92 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhc-chhhhHhhHHHHHhhhhhhHHHHHHhc--chh
Confidence 555555566788899999999999988865221 0111223332333 688999999999999998888888888 889
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCCh--------------------h
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNA--------------------V 764 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~--------------------~ 764 (924)
+++.+.-++|..+..+|+|++|+.+..+-|.++++.||+..+.|++.++|.||...|.. +
T Consensus 93 GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 93 GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred ccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877652 4
Q ss_pred hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCC
Q 002424 765 LGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPS 844 (924)
Q Consensus 765 ~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~ 844 (924)
.|...+++-|++.+..|++.-..++.-+||.+|.-+|+. ++|+...+.-|.+..++||+...-+|+..||.||+-
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf--~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif--- 247 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDF--DQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF--- 247 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccH--HHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh---
Confidence 566778888999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q 002424 845 FSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLAL 908 (924)
Q Consensus 845 ~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~~~ 908 (924)
.|.++.|+++++.++..+..++++.-+++.-|-||..|--+-+...+.++-.+...+-..+
T Consensus 248 ---lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL 308 (639)
T KOG1130|consen 248 ---LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL 308 (639)
T ss_pred ---hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999988888777555444444433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.7e-12 Score=134.70 Aligned_cols=287 Identities=13% Similarity=0.044 Sum_probs=235.9
Q ss_pred hhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHH---HHHHHhhHHHHHHHcCCHHHHHHHHH
Q 002424 613 TCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI---LLLKLQLLHERSLHRGHLKLAQKVCD 689 (924)
Q Consensus 613 ~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~---~~l~l~l~~~~al~~G~~~~A~~~l~ 689 (924)
.++.+..+.+-.+.++.||+...-..-+|..++.+-+.-... |..-..+. ..+. + ...++..|-+..+.+.++
T Consensus 71 ~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~l-pgt~~~~~~gq~~l~--~-~~Ahlgls~fq~~Lesfe 146 (518)
T KOG1941|consen 71 DTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGL-PGTRAGQLGGQVSLS--M-GNAHLGLSVFQKALESFE 146 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCCCcccccchhhhh--H-HHHhhhHHHHHHHHHHHH
Confidence 345555566778899999999988888888887776644432 21111111 1111 1 167788999999999999
Q ss_pred HHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhH----HHHHHHHHHHHHhcCChhh
Q 002424 690 ELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVEN----ASVLLLLAEIHKKSGNAVL 765 (924)
Q Consensus 690 ~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~----a~al~~la~i~~~~G~~~~ 765 (924)
.+..++...+ |+..+..+...++.+.....|++.|+-+...+.++.+..+...+. .-++..++-.+...|+...
T Consensus 147 ~A~~~A~~~~--D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lgd 224 (518)
T KOG1941|consen 147 KALRYAHNND--DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGD 224 (518)
T ss_pred HHHHHhhccC--CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhccccc
Confidence 9999988777 999999999999999999999999999999999999887644443 4478889999999999999
Q ss_pred hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCC
Q 002424 766 GIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSF 845 (924)
Q Consensus 766 Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~ 845 (924)
|.+...+|..++-++|++...++.++.+|++|...|+. ++|..-+|++|-.....||+..+-.++...|||.-....-
T Consensus 225 A~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~--e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~ 302 (518)
T KOG1941|consen 225 AMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDL--ERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQ 302 (518)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccH--hHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999 9999999999999999999999999999999998871100
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q 002424 846 SVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLAL 908 (924)
Q Consensus 846 ~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~~~ 908 (924)
. .+.--+|+++-+++++++.+||+...+..+...+|.+|+..|+.++-+.....+-++..+.
T Consensus 303 ~-k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e~ 364 (518)
T KOG1941|consen 303 N-KICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEET 364 (518)
T ss_pred h-cccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 0 1223469999999999999999999999999999999999999887666555565555543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-10 Score=146.69 Aligned_cols=482 Identities=12% Similarity=0.016 Sum_probs=286.8
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHCCCchHHHHHHHHhhhhcCcHHHHHHHHHhhhhccCCCCCCCCCCCC
Q 002424 282 QGYLMEQADAIEKHGSSFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPS 361 (924)
Q Consensus 282 e~~l~~qi~~l~~~~~~~p~~~l~~~~~~~~~~~p~~~~~~~l~~L~~~~~~dy~~A~d~Lh~yFD~~~~~~~~~r~~~~ 361 (924)
..+|-.|+...+..+ -++..++.+.++....|+=|.+.+....-+++.||+..|...+.+-......... -+...
T Consensus 28 ~~~Ll~q~~~~~~~~---~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~-~~~~~- 102 (1157)
T PRK11447 28 QQQLLEQVRLGEATH---REDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNA-YRSSR- 102 (1157)
T ss_pred HHHHHHHHHHHHhhC---ChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChH-HHHHH-
Confidence 445777887766544 2356677888888899999999999999999999999999999998877632100 00000
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcccCcccCcCCCCCCCCc
Q 002424 362 IGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSSYSPIT 441 (924)
Q Consensus 362 ~~~~~~~~~~yall~la~~h~~fg~~~~A~~~l~Eai~~Aqe~~D~~cl~~~l~wl~~l~~~~~~a~~~~~~g~~~~~~~ 441 (924)
..-.....-.-..|.+|.+...-|++++|+..++.++... .+...++ +.+...+....+
T Consensus 103 ~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~---p~~~~la--~~y~~~~~~~~g---------------- 161 (1157)
T PRK11447 103 TTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA---PPELDLA--VEYWRLVAKLPA---------------- 161 (1157)
T ss_pred HHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC---CCChHHH--HHHHHHHhhCCc----------------
Confidence 0000000011135888999999999999999999998642 2222222 221111211111
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccCCCCccCCCcccccccCCchhHHHHHHhhhhcc
Q 002424 442 SIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLI 521 (924)
Q Consensus 442 ~~~~~~~~~~q~l~lL~~~~~ra~e~~~~~L~s~~~l~~ak~~l~~g~~~~~~~g~~~~~~~~~~~a~~~e~l~~~~~l~ 521 (924)
..++++..|++.++.. |.- ....+.+++.....|+. ..+.+.+.+.....
T Consensus 162 -------~~~~A~~~L~~ll~~~-----P~~-~~~~~~LA~ll~~~g~~-----------------~eAl~~l~~~~~~~ 211 (1157)
T PRK11447 162 -------QRPEAINQLQRLNADY-----PGN-TGLRNTLALLLFSSGRR-----------------DEGFAVLEQMAKSP 211 (1157)
T ss_pred -------cHHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHccCCH-----------------HHHHHHHHHHhhCC
Confidence 1267888888755432 221 12334455544444442 44555555531111
Q ss_pred cccccccccccCCCccchHHhhhccCCCCcchhhhccccCCCccccccccCCCCcchhhhhhhhhHHHHHHHHHHhhCch
Q 002424 522 SDFVSESSTMTTDGAFSTSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAYGSA 601 (924)
Q Consensus 522 ~d~~~~~~~~~~~g~~~~~~l~nl~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~l~~l~g~~~~l~a~~W~~~G~~ 601 (924)
.. .......+++.+.... ........-...+..+...
T Consensus 212 ~~----------~~~aa~~~~~~l~~~~---------------------------------~~~~~~~~l~~~l~~~p~~ 248 (1157)
T PRK11447 212 AG----------RDAAAQLWYGQIKDMP---------------------------------VSDASVAALQKYLQVFSDG 248 (1157)
T ss_pred Cc----------hHHHHHHHHHHHhccC---------------------------------CChhhHHHHHHHHHHCCCc
Confidence 00 0000000111110000 0000011111111222111
Q ss_pred H-HHHhHHHH--HHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHc
Q 002424 602 P-LTRVNTLI--YATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHR 678 (924)
Q Consensus 602 ~-ls~~~~~~--~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~ 678 (924)
. .......+ ......+.. .....+|..+...|++++|...++++.+..|..... ...+. ..++..
T Consensus 249 ~~~~~A~~~L~~~~~~~~dp~------~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a-~~~Lg-----~~~~~~ 316 (1157)
T PRK11447 249 DSVAAARSQLAEQQKQLADPA------FRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEA-LGALG-----QAYSQQ 316 (1157)
T ss_pred hHHHHHHHHHHHHHHhccCcc------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHH-----HHHHHc
Confidence 1 00000000 000111111 112345788889999999999999999887643221 11122 677899
Q ss_pred CCHHHHHHHHHHHhhhhhccCCCCc------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 679 GHLKLAQKVCDELGVMASSVTGVDM------DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 679 G~~~~A~~~l~~ll~l~~~~~~~D~------~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
|++++|...+++++.+.+.....+. ..........+..+...|++++|++.+++++... + ....++..
T Consensus 317 g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-----P-~~~~a~~~ 390 (1157)
T PRK11447 317 GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-----N-TDSYAVLG 390 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C-CCHHHHHH
Confidence 9999999999999886442210000 0012234566888999999999999999998852 2 23567889
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh---CCHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH---GGLELRA 829 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~---gd~~~~A 829 (924)
+|.++...|++++|+..+.+++.+.-.. ..++..|+.++.. +.. ++|+.++++..+.-... ....+..
T Consensus 391 Lg~~~~~~g~~~eA~~~y~~aL~~~p~~------~~a~~~L~~l~~~-~~~--~~A~~~l~~l~~~~~~~~~~~~~~l~~ 461 (1157)
T PRK11447 391 LGDVAMARKDYAAAERYYQQALRMDPGN------TNAVRGLANLYRQ-QSP--EKALAFIASLSASQRRSIDDIERSLQN 461 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHh-cCH--HHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999875321 3456678888754 455 89999887654432111 0122334
Q ss_pred HHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002424 830 RAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 901 (924)
Q Consensus 830 ~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f 901 (924)
..+..+|.++.. .|++++|+.++++|++..-. -..+++.+|.+|...|+.+++.......
T Consensus 462 ~~~~~~a~~~~~------~g~~~eA~~~~~~Al~~~P~------~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 462 DRLAQQAEALEN------QGKWAQAAELQRQRLALDPG------SVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred hHHHHHHHHHHH------CCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567778888988 89999999999999986421 2347889999999999998876654443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-11 Score=140.56 Aligned_cols=271 Identities=17% Similarity=0.090 Sum_probs=227.1
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhc-cCchH-HHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccC
Q 002424 622 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLS-VSKSR-ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 622 d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~-~~~~~-~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~ 699 (924)
.....+.++|+..++.+|+|+.|...+++|.+.... .+... .....+......++..+++.+|..+|..++++....-
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 355677888999999999999999999999987432 23211 1111122223788999999999999999999987776
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cccchhH-HHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-FNLQVEN-ASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~-~gd~~~~-a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+.|-...+.++.+++.++...|+|.+|..++++++.+... .+....+ +..+..++.++...++++.|..++.+++.+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 6676778999999999999999999999999999998876 3333333 5578999999999999999999999999998
Q ss_pred H-HhCCcH-HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCC--HHHHHHHHHHHHHhhhcCCCCCCCCChHH
Q 002424 778 Q-LLNLDL-LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG--LELRARAFIAEAKCLLSDPSFSVSQNPEA 853 (924)
Q Consensus 778 ~-~~g~~~-~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd--~~~~A~a~~~LAr~~la~~~~~~~g~~~~ 853 (924)
. ..|-.. ..+....+||.++..+|.. ++|++++++|+...++.+. ....+..+..||..+.. ...+.+
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~--~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~------~k~~~~ 427 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKY--KEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE------LKKYEE 427 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH------hcccch
Confidence 4 456555 8899999999999999998 9999999999999999877 67889999999988877 788889
Q ss_pred HHHHHHHHHHHHHhhcCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002424 854 VLDPLRQASEELQVLEDH-ELAAEAFYLIAIVFDKLGRLAEREEAAAL 900 (924)
Q Consensus 854 Al~~L~~A~~~f~~l~~~-~~~~~vl~~lA~l~~~lGd~~~r~~aa~~ 900 (924)
|-..+.+|..+...+|.- ...--++..||.+|+.+|+.+.+.+....
T Consensus 428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 999999999999777654 47888999999999999999998874443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-11 Score=139.60 Aligned_cols=260 Identities=17% Similarity=0.098 Sum_probs=208.7
Q ss_pred HHHHHhhCchHHHHhHHHHHHhhcCCCC-ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhh
Q 002424 592 ATAWEAYGSAPLTRVNTLIYATCFSDGS-SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQL 670 (924)
Q Consensus 592 a~~W~~~G~~~ls~~~~~~~~~~~~~~~-~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l 670 (924)
+.+|..+|+.-++..........|.+.. -.-....++.|||.++-..+.|++|...+++|+..-|-..- .++-+.
T Consensus 218 AiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~-a~gNla--- 293 (966)
T KOG4626|consen 218 AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAV-AHGNLA--- 293 (966)
T ss_pred eeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchh-hccceE---
Confidence 4578888888777766544444444311 11145789999999999999999999999998865432111 011111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHH
Q 002424 671 LHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVL 750 (924)
Q Consensus 671 ~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al 750 (924)
-.+..+|..+.|...+++++++-+ . -..+..+++..+...|+-.||.+++.++|.+|-. .++++
T Consensus 294 --~iYyeqG~ldlAI~~Ykral~~~P-------~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~------hadam 357 (966)
T KOG4626|consen 294 --CIYYEQGLLDLAIDTYKRALELQP-------N-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN------HADAM 357 (966)
T ss_pred --EEEeccccHHHHHHHHHHHHhcCC-------C-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc------cHHHH
Confidence 467789999999999999998632 1 4578999999999999999999999999997654 48999
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHH
Q 002424 751 LLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRAR 830 (924)
Q Consensus 751 ~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~ 830 (924)
.++|.|+...|..+.|..++..|++..- .-|.+..+||.++.+.|.. ++|+.++.+++.+-- .-|.
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p------~~aaa~nNLa~i~kqqgnl--~~Ai~~YkealrI~P------~fAd 423 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFP------EFAAAHNNLASIYKQQGNL--DDAIMCYKEALRIKP------TFAD 423 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhCh------hhhhhhhhHHHHHHhcccH--HHHHHHHHHHHhcCc------hHHH
Confidence 9999999999999999999999988764 3467788999999999999 999999999976632 4577
Q ss_pred HHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 002424 831 AFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 831 a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~a 897 (924)
+|..+|.++-. .|+...|+.++.+|..+ ...-+++...||.+|...|..+++.+.
T Consensus 424 a~~NmGnt~ke------~g~v~~A~q~y~rAI~~------nPt~AeAhsNLasi~kDsGni~~AI~s 478 (966)
T KOG4626|consen 424 ALSNMGNTYKE------MGDVSAAIQCYTRAIQI------NPTFAEAHSNLASIYKDSGNIPEAIQS 478 (966)
T ss_pred HHHhcchHHHH------hhhHHHHHHHHHHHHhc------CcHHHHHHhhHHHHhhccCCcHHHHHH
Confidence 99999999998 89999999999988653 356688999999999999999986653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-10 Score=137.06 Aligned_cols=212 Identities=13% Similarity=-0.021 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++.++|..+...|+|++|...++.+.+..|...+ .+.. + +..++..|++.+|...+++++.+.+ .
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~--~~~~---l-g~~~~~~g~~~~A~~~~~kal~l~P-------~ 431 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD--IYYH---R-AQLHFIKGEFAQAGKDYQKSIDLDP-------D 431 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHH---H-HHHHHHcCCHHHHHHHHHHHHHcCc-------c
Confidence 467889999999999999999999999887553221 2211 1 1577889999999999999998632 2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
...+...+|.++...|++++|+..+++++... .....++..+|.++...|++++|+..+.+|+.+..+.....
T Consensus 432 -~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~ 504 (615)
T TIGR00990 432 -FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMY 504 (615)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccc
Confidence 34668899999999999999999999998742 22366788899999999999999999999999875433322
Q ss_pred HHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELW-LSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 785 ~~A~al~~La~l~-~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
.....+...+.++ ...|+. ++|+.++++++..- - .-..++..+|+++.. .|++++|+.++++|.+
T Consensus 505 ~~~~~l~~~a~~~~~~~~~~--~eA~~~~~kAl~l~--p----~~~~a~~~la~~~~~------~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 505 MNVLPLINKALALFQWKQDF--IEAENLCEKALIID--P----ECDIAVATMAQLLLQ------QGDVDEALKLFERAAE 570 (615)
T ss_pred ccHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHhcC--C----CcHHHHHHHHHHHHH------ccCHHHHHHHHHHHHH
Confidence 2222223333333 336776 99999999998752 1 123478889999999 8999999999999999
Q ss_pred HHHhhcC
Q 002424 864 ELQVLED 870 (924)
Q Consensus 864 ~f~~l~~ 870 (924)
+.+..+.
T Consensus 571 l~~~~~e 577 (615)
T TIGR00990 571 LARTEGE 577 (615)
T ss_pred HhccHHH
Confidence 9876554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-09 Score=141.42 Aligned_cols=131 Identities=14% Similarity=0.002 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHH
Q 002424 747 ASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLE 826 (924)
Q Consensus 747 a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~ 826 (924)
..++..+|.++.+.|++++|+..+.+++.+.-. ...++..++.++...|+. ++|++.++.++..-- .
T Consensus 603 ~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~------~~~a~~~la~~~~~~g~~--~eA~~~l~~ll~~~p--~--- 669 (1157)
T PRK11447 603 TRIDLTLADWAQQRGDYAAARAAYQRVLTREPG------NADARLGLIEVDIAQGDL--AAARAQLAKLPATAN--D--- 669 (1157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCH--HHHHHHHHHHhccCC--C---
Confidence 346788999999999999999999999886421 246788899999999998 999999997764311 1
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 002424 827 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 827 ~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~a 897 (924)
...++..+|.++.+ .|++++|+.++++++.....-......+.++..+|.++...|+++++.+.
T Consensus 670 -~~~~~~~la~~~~~------~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 670 -SLNTQRRVALAWAA------LGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred -ChHHHHHHHHHHHh------CCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22356678888888 89999999999999887644333333567788889999999999997764
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.8e-09 Score=132.57 Aligned_cols=184 Identities=20% Similarity=0.124 Sum_probs=103.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..+...|++.+|...+.++....+ + . .....++.++...|++++|.+.+++++... .....++..
T Consensus 711 ~~~~~~g~~~~A~~~~~~~~~~~~-----~--~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~ 775 (899)
T TIGR02917 711 DLYLRQKDYPAAIQAYRKALKRAP-----S--S--QNAIKLHRALLASGNTAEAVKTLEAWLKTH------PNDAVLRTA 775 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCC-----C--c--hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHH
Confidence 344556666666666666655311 1 1 344555666666666666666666655421 112455666
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|.++...|++.+|+..+.+++...- ....+...++.++...|. .+|+.++++++...-.. ..++
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~~~---~~A~~~~~~~~~~~~~~------~~~~ 840 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKKAP------DNAVVLNNLAWLYLELKD---PRALEYAEKALKLAPNI------PAIL 840 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCc---HHHHHHHHHHHhhCCCC------cHHH
Confidence 66666666666666666666655421 123445556666666665 34666666666542211 1234
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAA 898 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa 898 (924)
..+|.++.. .|++++|+.++++|++.... ...++..++.++...|+.+++.+..
T Consensus 841 ~~~~~~~~~------~g~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 841 DTLGWLLVE------KGEADRALPLLRKAVNIAPE------AAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred HHHHHHHHH------cCCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456666666 67777777777777664321 3456666777777777766655543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.5e-09 Score=131.86 Aligned_cols=230 Identities=17% Similarity=0.030 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++..+|..+...|++++|...++++.+..+..... + . .++ ..+...|++++|...++++....+ +
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~-~--~la-~~~~~~g~~~~A~~~~~~~~~~~~-----~--- 531 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA--A-A--NLA-RIDIQEGNPDDAIQRFEKVLTIDP-----K--- 531 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH--H-H--HHH-HHHHHCCCHHHHHHHHHHHHHhCc-----C---
Confidence 567888899999999999999999888765432211 1 1 111 566788999999999998877422 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
...+...++.++...|++++|...+++++... .........++.++...|++.+|+..+.+++.... .
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~--- 599 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELN------PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP---D--- 599 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---C---
Confidence 35677888899999999999999998887632 22345667889999999999999998888765321 1
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
...+...+|.++...|+. ++|+..++.++..-- ....++..+|.++.. .|++++|+.+++++....
T Consensus 600 ~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~------~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDL--NKAVSSFKKLLALQP------DSALALLLLADAYAV------MKNYAKAITSLKRALELK 665 (899)
T ss_pred CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCC------CChHHHHHHHHHHHH------cCCHHHHHHHHHHHHhcC
Confidence 135677789999889987 999999998875421 123567788988888 899999999999988753
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002424 866 QVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 901 (924)
Q Consensus 866 ~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f 901 (924)
. .-..+...++.++...|+.+++.+.....
T Consensus 666 ~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 666 P------DNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 12357788899999999988866554443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-11 Score=136.64 Aligned_cols=200 Identities=18% Similarity=0.053 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+.+++|+|.++-.+|..|-|+..++++.++-|...+.. .-++ ...-..|+.++|.+++.+++.+.+.
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay-~Nla-----nALkd~G~V~ea~~cYnkaL~l~p~------ 352 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAY-NNLA-----NALKDKGSVTEAVDCYNKALRLCPN------ 352 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHH-hHHH-----HHHHhccchHHHHHHHHHHHHhCCc------
Confidence 368999999999999999999999999999766554421 1111 2223569999999999999998442
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
.+.+.+++|.++..+|..++|..++..+++..-+ -+.+..++|.|+.+.|+...|+.++.+|+.+.
T Consensus 353 --hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~------ 418 (966)
T KOG4626|consen 353 --HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIK------ 418 (966)
T ss_pred --cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC------
Confidence 6788999999999999999999999999885433 37789999999999999999999999999885
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 784 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 784 ~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
..-|.++.++|.++-.+|+. +.|+..+++++-. .. .-|.|+..||-.|.. .|..++|+..+++|+.
T Consensus 419 P~fAda~~NmGnt~ke~g~v--~~A~q~y~rAI~~----nP--t~AeAhsNLasi~kD------sGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDV--SAAIQCYTRAIQI----NP--TFAEAHSNLASIYKD------SGNIPEAIQSYRTALK 484 (966)
T ss_pred chHHHHHHhcchHHHHhhhH--HHHHHHHHHHHhc----Cc--HHHHHHhhHHHHhhc------cCCcHHHHHHHHHHHc
Confidence 34678999999999999998 9999999988644 22 346788899999988 8999999999999986
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-09 Score=130.81 Aligned_cols=238 Identities=14% Similarity=0.001 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
..+.++..+|..+...|++++|+..++.+.+..|..... +. . ++ ..++..|++++|...+++++.+.
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~--~~-~--la-~~~~~~g~~~eA~~~~~~al~~~------- 395 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQS--YI-K--RA-SMNLELGDPDKAEEDFDKALKLN------- 395 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH--HH-H--HH-HHHHHCCCHHHHHHHHHHHHHhC-------
Confidence 556789999999999999999999999999876643221 11 1 11 56678999999999999998852
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~ 782 (924)
|. ...+++.+|.++...|++++|+..+++++... .....++..+|.++...|+++.|+..+.+++...-
T Consensus 396 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P---- 464 (615)
T TIGR00990 396 SE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP---- 464 (615)
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----
Confidence 21 35788999999999999999999999998742 22356788999999999999999999999987532
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHH-HhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 783 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEA-KCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LA-r~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
....+...+|.++..+|+. ++|+..+++++...............+...+ ..+.. .|++.+|+.++++|
T Consensus 465 --~~~~~~~~lg~~~~~~g~~--~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~------~~~~~eA~~~~~kA 534 (615)
T TIGR00990 465 --EAPDVYNYYGELLLDQNKF--DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW------KQDFIEAENLCEKA 534 (615)
T ss_pred --CChHHHHHHHHHHHHccCH--HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH------hhhHHHHHHHHHHH
Confidence 1245677899999999998 9999999999887544333222222222222 22222 58899999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002424 862 SEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAAL 900 (924)
Q Consensus 862 ~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~ 900 (924)
+..- + .-..++..+|.++...|+.++|.++...
T Consensus 535 l~l~-----p-~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 535 LIID-----P-ECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HhcC-----C-CcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 8752 2 1223678899999999999987664333
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-09 Score=139.10 Aligned_cols=297 Identities=14% Similarity=0.033 Sum_probs=212.9
Q ss_pred HHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHH
Q 002424 588 YLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLK 667 (924)
Q Consensus 588 ~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~ 667 (924)
....+.+....|...-+.......+.... .........+...+|..+...|++++|...++++...++..+........
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 33445555555554444333332222111 12223356778899999999999999999999999988877664422212
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHH
Q 002424 668 LQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENA 747 (924)
Q Consensus 668 l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a 747 (924)
+......++.+|++++|...+++++.++...+..+......+...++.++...|++++|.+.+++++...+..+ ....+
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~ 612 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ-PQQQL 612 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC-chHHH
Confidence 22222678899999999999999999877655323223345566789999999999999999999999877655 34566
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHH-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHH
Q 002424 748 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK-ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLE 826 (924)
Q Consensus 748 ~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~-A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~ 826 (924)
.++..+|.++...|++..|...+.+++.+....+..... ..........+...|.. ++|...+++..+... +...
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~A~~~l~~~~~~~~--~~~~ 688 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDK--EAAANWLRQAPKPEF--ANNH 688 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCH--HHHHHHHHhcCCCCC--ccch
Confidence 788889999999999999999999999887665432211 11111122444557777 888888877765322 2223
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 827 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 827 ~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
.....+..+|+++.. .|++++|+..+++|++.++..+.+....+++..+|.++...|+.+++.+
T Consensus 689 ~~~~~~~~~a~~~~~------~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~ 752 (903)
T PRK04841 689 FLQGQWRNIARAQIL------LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR 752 (903)
T ss_pred hHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 333445678888888 8999999999999999999999999999999999999999999887655
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.9e-11 Score=125.33 Aligned_cols=257 Identities=17% Similarity=0.129 Sum_probs=218.4
Q ss_pred ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHH-HhhHHHHHHHcCCHHHHHHHHHHHhhhhhcc
Q 002424 620 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLK-LQLLHERSLHRGHLKLAQKVCDELGVMASSV 698 (924)
Q Consensus 620 ~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~-l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~ 698 (924)
+..++.+.+..+..++...|+|.+++..--.....|.+..++.....+ +++. .-....-++.++..+....+.+ +
T Consensus 38 ~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnla-r~~e~l~~f~kt~~y~k~~l~l-p-- 113 (518)
T KOG1941|consen 38 DLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLA-RSNEKLCEFHKTISYCKTCLGL-P-- 113 (518)
T ss_pred HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHhcC-C--
Confidence 345777888899999999999999988766666677766665533322 3332 3444566788888888877775 2
Q ss_pred CCCCc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 699 TGVDM-DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 699 ~~~D~-~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+.++ .....+...++..++-+|.|+.+++.++.++.++.+.+|+-.+.++-..+|.++.+..++++|+.+...|+++.
T Consensus 114 -gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv 192 (518)
T KOG1941|consen 114 -GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV 192 (518)
T ss_pred -CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence 2232 33557778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCc----HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHH
Q 002424 778 QLLNLD----LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEA 853 (924)
Q Consensus 778 ~~~g~~----~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~ 853 (924)
+..+.. -.++.++.+|+-.+...|.. -.|.+..++++-+.+++||+...|+....+|..|+. .|+.+.
T Consensus 193 ~s~~l~d~~~kyr~~~lyhmaValR~~G~L--gdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~------~gd~e~ 264 (518)
T KOG1941|consen 193 NSYGLKDWSLKYRAMSLYHMAVALRLLGRL--GDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS------RGDLER 264 (518)
T ss_pred HhcCcCchhHHHHHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh------cccHhH
Confidence 998854 45788999999999999999 999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcC
Q 002424 854 VLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLG 889 (924)
Q Consensus 854 Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lG 889 (924)
|-.-+++|......++|+-++-+++...|.....+.
T Consensus 265 af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r 300 (518)
T KOG1941|consen 265 AFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLR 300 (518)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998887655443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6e-09 Score=127.59 Aligned_cols=97 Identities=10% Similarity=0.030 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHCCCchHHHHHHHHhhhhcCcHHHHHHHHHhhhhccCCCCCCCCCCCC
Q 002424 282 QGYLMEQADAIEKHGSSFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPS 361 (924)
Q Consensus 282 e~~l~~qi~~l~~~~~~~p~~~l~~~~~~~~~~~p~~~~~~~l~~L~~~~~~dy~~A~d~Lh~yFD~~~~~~~~~r~~~~ 361 (924)
+.++.+-+..+++.....- ...+..+...+|+-+.++|+--...+..|++..|++.+.+--...-
T Consensus 43 ~~~~~~~~~~~~~g~~~~A----~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P----------- 107 (656)
T PRK15174 43 QNIILFAIACLRKDETDVG----LTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV----------- 107 (656)
T ss_pred cCHHHHHHHHHhcCCcchh----HHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-----------
Confidence 4444555555554332222 2366777788999999999998999999999999999888655432
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 002424 362 IGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCL 400 (924)
Q Consensus 362 ~~~~~~~~~~yall~la~~h~~fg~~~~A~~~l~Eai~~ 400 (924)
..--+..++|.++..-|.+++|+..+++++.+
T Consensus 108 -------~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l 139 (656)
T PRK15174 108 -------CQPEDVLLVASVLLKSKQYATVADLAEQAWLA 139 (656)
T ss_pred -------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11236788999999999999999999999876
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-09 Score=127.29 Aligned_cols=239 Identities=15% Similarity=0.052 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhcc-Cc-hHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCC
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSV-SK-SRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~-~~-~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
.+.++.++|..+..+++|++|..+++.|+.++... |. +......+..+...+..+|++++|..+++++..+.......
T Consensus 240 va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~ 319 (508)
T KOG1840|consen 240 VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA 319 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc
Confidence 34444579999999999999999999999986643 32 22222222322267889999999999999999998775545
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cccch-hHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-FNLQV-ENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~-~gd~~-~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
...-.+..+...+.++..++++++|..++..++.+... .|... ..+....++|.++...|++..|.+.+..|+.+.++
T Consensus 320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 55557788899999999999999999999999987763 33333 56778999999999999999999999999999988
Q ss_pred hCC--cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHH-HHHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 002424 780 LNL--DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLE-LRARAFIAEAKCLLSDPSFSVSQNPEAVLD 856 (924)
Q Consensus 780 ~g~--~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~-~~A~a~~~LAr~~la~~~~~~~g~~~~Al~ 856 (924)
.+. ++..+..+..||..+.+++.. .+|-.+++++..+...+|.-. ..-..|..||.+|.+ .|+++.|.+
T Consensus 400 ~~~~~~~~~~~~l~~la~~~~~~k~~--~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~------~g~~e~a~~ 471 (508)
T KOG1840|consen 400 LLGKKDYGVGKPLNQLAEAYEELKKY--EEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRA------QGNYEAAEE 471 (508)
T ss_pred cccCcChhhhHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH------cccHHHHHH
Confidence 777 788899999999999999998 999999999999998887766 677789999999999 999999999
Q ss_pred HHHHHHHHHHhhcC
Q 002424 857 PLRQASEELQVLED 870 (924)
Q Consensus 857 ~L~~A~~~f~~l~~ 870 (924)
+.+++..+-+....
T Consensus 472 ~~~~~~~~~~~~~~ 485 (508)
T KOG1840|consen 472 LEEKVLNAREQRLG 485 (508)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999877765544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-08 Score=127.46 Aligned_cols=268 Identities=12% Similarity=0.027 Sum_probs=205.4
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccC-
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT- 699 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~- 699 (924)
.+..+..+...+..+...|+++.+...++.+-... ...+....... . ..++..|++++|..++.++.......+
T Consensus 370 ~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~---a-~~~~~~g~~~~a~~~l~~a~~~~~~~~~ 444 (903)
T PRK04841 370 AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV-LLENPRLVLLQ---A-WLAQSQHRYSEVNTLLARAEQELKDRNI 444 (903)
T ss_pred HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHH---H-HHHHHCCCHHHHHHHHHHHHHhccccCc
Confidence 34556667777888888999988777766431110 11111111111 1 456789999999999998876533221
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
..++.....+....+.++...|++++|...+++++.... .++......++..+|.++...|++.+|...+.+++.+++.
T Consensus 445 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~ 523 (903)
T PRK04841 445 ELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQ 523 (903)
T ss_pred ccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 113345677777889999999999999999999887422 2334445667889999999999999999999999999999
Q ss_pred hCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH--HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 002424 780 LNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL--ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDP 857 (924)
Q Consensus 780 ~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~--~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~ 857 (924)
.|.....+.++..+|.++...|+. ++|..++++++......|.. ...+.++..+|.++.. .|++++|..+
T Consensus 524 ~g~~~~~~~~~~~la~~~~~~G~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~------~G~~~~A~~~ 595 (903)
T PRK04841 524 HDVYHYALWSLLQQSEILFAQGFL--QAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE------WARLDEAEQC 595 (903)
T ss_pred hcchHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH------hcCHHHHHHH
Confidence 999999999999999999999998 99999999999999887642 3345556778888888 8999999999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002424 858 LRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKE 903 (924)
Q Consensus 858 L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~ 903 (924)
+++|+..++..+. .....++..+|.++...|+.+.+.+.......
T Consensus 596 ~~~al~~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 596 ARKGLEVLSNYQP-QQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHhHHhhhccCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999987763 34567888899999999999887765544433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-07 Score=109.02 Aligned_cols=242 Identities=13% Similarity=0.076 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
...-.|||.++-..++++.|...+.......|.+-+..++..+ .+..++...+|..++..++.+-. +
T Consensus 496 lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~------ma~~k~~~~ea~~~lk~~l~~d~-----~-- 562 (1018)
T KOG2002|consen 496 LTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGC------MARDKNNLYEASLLLKDALNIDS-----S-- 562 (1018)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhH------HHHhccCcHHHHHHHHHHHhccc-----C--
Confidence 5567999999999999999999999999888876665443333 44578999999999999998522 1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh-----cCChhhhHHHHHHHHHHH-H
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK-----SGNAVLGIPYALASLSFC-Q 778 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~-----~G~~~~Al~~l~~AL~la-~ 778 (924)
-..++...|.+++....+.-|-+.++..+..-. ...-+.+++.+|.++.+ ..++..+..++.+|+.+. .
T Consensus 563 -np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~----~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~k 637 (1018)
T KOG2002|consen 563 -NPNARSLLGNLHLKKSEWKPAKKKFETILKKTS----TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGK 637 (1018)
T ss_pred -CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhc----cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 457888999999999999999998887766322 22446677778877743 344466788888888885 3
Q ss_pred HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHH
Q 002424 779 LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPL 858 (924)
Q Consensus 779 ~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L 858 (924)
-...+.--+.|-..+|-|+..-|.. .+|++++.++-+..-.+.| ++..+|.|++. .|.+..|++.+
T Consensus 638 vL~~dpkN~yAANGIgiVLA~kg~~--~~A~dIFsqVrEa~~~~~d------v~lNlah~~~e------~~qy~~AIqmY 703 (1018)
T KOG2002|consen 638 VLRNDPKNMYAANGIGIVLAEKGRF--SEARDIFSQVREATSDFED------VWLNLAHCYVE------QGQYRLAIQMY 703 (1018)
T ss_pred HHhcCcchhhhccchhhhhhhccCc--hHHHHHHHHHHHHHhhCCc------eeeeHHHHHHH------HHHHHHHHHHH
Confidence 4555555566777899999999987 9999999888776665555 78899999999 89999999999
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002424 859 RQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFK 902 (924)
Q Consensus 859 ~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~ 902 (924)
+.++.-|-. .---+|+..||+++...|+..++-+++-..+
T Consensus 704 e~~lkkf~~----~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 704 ENCLKKFYK----KNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHhcc----cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999998863 3345688999999999999887666554433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-08 Score=115.30 Aligned_cols=240 Identities=17% Similarity=0.094 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++..+|..+..+|+|++|...++.+... +......... ........+...|++++|...+.++... ++.
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~-------~~~ 139 (389)
T PRK11788 69 VELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLL-ALQELGQDYLKAGLLDRAEELFLQLVDE-------GDF 139 (389)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHcC-------Ccc
Confidence 467888999999999999999999977753 2222111111 1112226788999999999999998763 221
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
...+...++.++...|++++|++.++.++..... .........+..+|.++...|+++.|+..+.+++.....
T Consensus 140 -~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----- 212 (389)
T PRK11788 140 -AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ----- 212 (389)
T ss_pred -hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-----
Confidence 4577888999999999999999999988763211 111234556788999999999999999999999886432
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
...+...+|.++...|+. ++|+.++++++.. +......++..++.++.. .|++++|+.+++++...
T Consensus 213 -~~~~~~~la~~~~~~g~~--~~A~~~~~~~~~~-----~p~~~~~~~~~l~~~~~~------~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 213 -CVRASILLGDLALAQGDY--AAAIEALERVEEQ-----DPEYLSEVLPKLMECYQA------LGDEAEGLEFLRRALEE 278 (389)
T ss_pred -CHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHH-----ChhhHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHh
Confidence 235677799999999998 9999999998764 223345667888999988 89999999999998876
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002424 865 LQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 901 (924)
Q Consensus 865 f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f 901 (924)
. .+. .+...++.++...|+.+++.......
T Consensus 279 ~---p~~----~~~~~la~~~~~~g~~~~A~~~l~~~ 308 (389)
T PRK11788 279 Y---PGA----DLLLALAQLLEEQEGPEAAQALLREQ 308 (389)
T ss_pred C---CCc----hHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3 121 34478999999999998876654433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.2e-08 Score=111.63 Aligned_cols=210 Identities=17% Similarity=0.062 Sum_probs=160.2
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
......++..+|..+...|+|++|...++++.+.-+ ........ ++ ..+...|++++|.+.+..+....+ .
T Consensus 103 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~--la-~~~~~~g~~~~A~~~~~~~~~~~~--~- 173 (389)
T PRK11788 103 REQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD---FAEGALQQ--LL-EIYQQEKDWQKAIDVAERLEKLGG--D- 173 (389)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc---chHHHHHH--HH-HHHHHhchHHHHHHHHHHHHHhcC--C-
Confidence 344567889999999999999999999998876522 11111111 11 577889999999999999877422 1
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 701 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
.+..........++.++...|++++|...+++++.... ....+...+|.++.+.|++.+|+..+.+++...
T Consensus 174 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--- 244 (389)
T PRK11788 174 SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP------QCVRASILLGDLALAQGDYAAAIEALERVEEQD--- 244 (389)
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---
Confidence 11112345567889999999999999999999987522 235678889999999999999999999988752
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 002424 781 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 860 (924)
Q Consensus 781 g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~ 860 (924)
+.....+...++.++...|+. ++|...+++++.. ..+. ..+..+|+.+.. .|++++|+..+++
T Consensus 245 --p~~~~~~~~~l~~~~~~~g~~--~~A~~~l~~~~~~---~p~~----~~~~~la~~~~~------~g~~~~A~~~l~~ 307 (389)
T PRK11788 245 --PEYLSEVLPKLMECYQALGDE--AEGLEFLRRALEE---YPGA----DLLLALAQLLEE------QEGPEAAQALLRE 307 (389)
T ss_pred --hhhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh---CCCc----hHHHHHHHHHHH------hCCHHHHHHHHHH
Confidence 223345667899999999998 9999999998765 2232 234788999998 8999999999999
Q ss_pred HHHHH
Q 002424 861 ASEEL 865 (924)
Q Consensus 861 A~~~f 865 (924)
+++.+
T Consensus 308 ~l~~~ 312 (389)
T PRK11788 308 QLRRH 312 (389)
T ss_pred HHHhC
Confidence 98874
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.1e-09 Score=114.49 Aligned_cols=218 Identities=14% Similarity=0.072 Sum_probs=165.6
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 753 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~l 753 (924)
.+...|+|.+|.+.+.++..+....+ ++...+.+....+.++ ..+++++|++.+++++..+...|+....++++..+
T Consensus 44 ~fk~~~~~~~A~~ay~kAa~~~~~~~--~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 44 CFKLAKDWEKAAEAYEKAADCYEKLG--DKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44577999999999999988877666 7676777777766665 55599999999999999999999999999999999
Q ss_pred HHHHHhc-CChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCC-HHHHHHH
Q 002424 754 AEIHKKS-GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG-LELRARA 831 (924)
Q Consensus 754 a~i~~~~-G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd-~~~~A~a 831 (924)
|.++... |+++.|+.++.+|+.+....+........+..+|.++..+|+. ++|.++++++....+...- .+.....
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y--~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY--EEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHhhcccccchhHHHH
Confidence 9999999 9999999999999999999999999999999999999999987 9999999999887666554 3444445
Q ss_pred HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 832 FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 832 ~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
++..+-|+++ .||+..|...+++.....-.... ..+++++..+-.++.. ||.+.-.++...|..+
T Consensus 199 ~l~a~l~~L~------~~D~v~A~~~~~~~~~~~~~F~~-s~E~~~~~~l~~A~~~-~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 199 FLKAILCHLA------MGDYVAARKALERYCSQDPSFAS-SREYKFLEDLLEAYEE-GDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHH------TT-HHHHHHHHHHHGTTSTTSTT-SHHHHHHHHHHHHHHT-T-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHH------cCCHHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHHHHHh-CCHHHHHHHHHHHccc
Confidence 6677789999 88888887666665443322223 5667777777776654 5555545555555443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.3e-07 Score=113.45 Aligned_cols=234 Identities=13% Similarity=-0.040 Sum_probs=161.6
Q ss_pred ccCH---HHHHHHHHHHHHHhhccCchHHH--HHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHH
Q 002424 638 FKGY---KEAFSALKIAEEKFLSVSKSRIL--LLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLR 712 (924)
Q Consensus 638 ~G~y---~eA~~~L~~a~~~f~~~~~~~~~--~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~ 712 (924)
.++| ++|++.++.+.+.++...+.... ....... ...+.+|++++|...+++++.. ++.+| ..+...
T Consensus 206 ~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l-~~Ll~~g~~~eA~~~~~~ll~~----~~~~P---~~a~~~ 277 (765)
T PRK10049 206 KERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL-GALLARDRYKDVISEYQRLKAE----GQIIP---PWAQRW 277 (765)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH-HHHHHhhhHHHHHHHHHHhhcc----CCCCC---HHHHHH
Confidence 3456 77888888888776544432211 1111101 2335779999999999998774 11122 234444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH--------hCCcH
Q 002424 713 HARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL--------LNLDL 784 (924)
Q Consensus 713 ~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~--------~g~~~ 784 (924)
.+.+++..|++++|+..+++++..-. .+..........++.++...|++++|+.++.++....-. ...+.
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p--~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~ 355 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPE--TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN 355 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCC--CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC
Confidence 68899999999999999999876210 110111345566677789999999999999887765310 01111
Q ss_pred -HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 785 -LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 785 -~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
....+...+|.++...|+. ++|++++++++...-. + ..++..+|.++.. .|++++|+..+++|++
T Consensus 356 ~~~~~a~~~~a~~l~~~g~~--~eA~~~l~~al~~~P~--n----~~l~~~lA~l~~~------~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 356 DDWLQGQSLLSQVAKYSNDL--PQAEMRARELAYNAPG--N----QGLRIDYASVLQA------RGWPRAAENELKKAEV 421 (765)
T ss_pred chHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHh------cCCHHHHHHHHHHHHh
Confidence 2345667789999999998 9999999999776322 1 4588899999998 8999999999999988
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002424 864 ELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 901 (924)
Q Consensus 864 ~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f 901 (924)
.. ..-..+++.+|.++..+|+.+++.......
T Consensus 422 l~------Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 422 LE------PRNINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred hC------CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 65 222337888999999999988876654443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.8e-06 Score=106.31 Aligned_cols=214 Identities=14% Similarity=0.003 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
...+.......+..+|++++|.+.++.+.+.-+.........+. ..++..|++++|..++++++...+ .++
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la-----~~yl~~g~~e~A~~~l~~~l~~~p----~~~ 306 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVA-----SAYLKLHQPEKAQSILTELFYHPE----TIA 306 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHH-----HHHHhcCCcHHHHHHHHHHhhcCC----CCC
Confidence 34444432334457799999999999887663322222111122 678899999999999999876311 121
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------cccch-hHHHHHHHHHHHHHhcCChhhhHHHHHHHH
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK--------FNLQV-ENASVLLLLAEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~--------~gd~~-~~a~al~~la~i~~~~G~~~~Al~~l~~AL 774 (924)
.........++..+...|++++|++.++++...... ...+. ....+...+|.++...|++++|+..+.+++
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 112355666677789999999999999988763210 01111 235678899999999999999999999988
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 002424 775 SFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAV 854 (924)
Q Consensus 775 ~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~A 854 (924)
...-.. ..++..+|.++...|.+ ++|++.+++++..- -.+ ..+++.+|.+.+. .+++++|
T Consensus 387 ~~~P~n------~~l~~~lA~l~~~~g~~--~~A~~~l~~al~l~--Pd~----~~l~~~~a~~al~------~~~~~~A 446 (765)
T PRK10049 387 YNAPGN------QGLRIDYASVLQARGWP--RAAENELKKAEVLE--PRN----INLEVEQAWTALD------LQEWRQM 446 (765)
T ss_pred HhCCCC------HHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhC--CCC----hHHHHHHHHHHHH------hCCHHHH
Confidence 774221 36788899999999998 99999999998753 112 2256666777777 8999999
Q ss_pred HHHHHHHHHHHH
Q 002424 855 LDPLRQASEELQ 866 (924)
Q Consensus 855 l~~L~~A~~~f~ 866 (924)
...++++++.+-
T Consensus 447 ~~~~~~ll~~~P 458 (765)
T PRK10049 447 DVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHHhCC
Confidence 999999988553
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.5e-08 Score=103.70 Aligned_cols=206 Identities=16% Similarity=0.015 Sum_probs=159.2
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
.+..+.++.++|..+...|+|++|...++++....|... ..+. .+ ...+...|++++|...+++++.+.+
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~---~l-a~~~~~~~~~~~A~~~~~~al~~~~---- 96 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY--LAYL---AL-ALYYQQLGELEKAEDSFRRALTLNP---- 96 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHH---HH-HHHHHHcCCHHHHHHHHHHHHhhCC----
Confidence 445578899999999999999999999999987654321 1111 11 1677899999999999999988632
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 701 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
. ...+...++.++...|++++|.+.+++++.. .........+..+|.++...|++..|...+.+++.....
T Consensus 97 ~----~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 167 (234)
T TIGR02521 97 N----NGDVLNNYGTFLCQQGKYEQAMQQFEQAIED----PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ- 167 (234)
T ss_pred C----CHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence 1 2367888999999999999999999999863 222334567888999999999999999999999876432
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 002424 781 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 860 (924)
Q Consensus 781 g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~ 860 (924)
...+...+|.++...|+. ++|...+++++.. . .+ ....+..+++++.. .|+.++|..+.+.
T Consensus 168 -----~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~--~-~~---~~~~~~~~~~~~~~------~~~~~~a~~~~~~ 228 (234)
T TIGR02521 168 -----RPESLLELAELYYLRGQY--KDARAYLERYQQT--Y-NQ---TAESLWLGIRIARA------LGDVAAAQRYGAQ 228 (234)
T ss_pred -----ChHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh--C-CC---CHHHHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 134667899999999998 9999999999876 1 11 34445577788887 7888888888776
Q ss_pred HHHH
Q 002424 861 ASEE 864 (924)
Q Consensus 861 A~~~ 864 (924)
+...
T Consensus 229 ~~~~ 232 (234)
T TIGR02521 229 LQKL 232 (234)
T ss_pred HHhh
Confidence 6543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.6e-08 Score=105.62 Aligned_cols=319 Identities=19% Similarity=0.276 Sum_probs=198.2
Q ss_pred CCCCccccChhHHHHHHHHHHhcCCC---CccCCCCCchhhhhhhhhhhhhhhhcCCCCCCc---ccHHHHHHHHHhhch
Q 002424 6 KPPGAFAVTPHKVSVCILIQMYAPPA---MMSVPFPFSSVAQHNRFGLYLFALTKSCEDILE---PKLDELINQLREIGD 79 (924)
Q Consensus 6 ~~~~~~~lTP~ki~ll~LI~~Y~~~~---~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~l~~l~~~l~~~~~ 79 (924)
|+--+++.||++.++|-.++.|+-+. +..+|..+ ..+++.. +....+ --..|+...+.....
T Consensus 17 k~kqa~fF~~~q~~ll~n~elkal~p~~lqk~v~~ll-----------~vlp~~~-p~~l~y~n~lrv~d~~s~l~sL~e 84 (482)
T KOG4322|consen 17 KNKQATFFTPHQLTLLLNIELKALRPIQLQKCVPFLD-----------LVLPYFN-PNDLQYQNLLRVHDITSHLPSLIE 84 (482)
T ss_pred cchhhhhccHHHHHHHHhhhhhccCchhhhcCchHHH-----------HhccccC-hhhhccchhhHHHHHHhhhhHHHH
Confidence 45567899999999999999999642 12222110 0111111 110000 011222222211110
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHHHHHHHHHhhhcCCCCCCCCCccccccCCCchhHHHHHHHHhhcccchhhHHHHHHH
Q 002424 80 VLYQWLTDQLISRLSSLSSPDDLFNLFSDLRAILGGTDLSAVDDEQVVLDPNSNLGMFVRRCLLAFNLLCFEGVCHLLTS 159 (924)
Q Consensus 80 ~~~~~~~~~ll~~L~~i~s~d~L~~f~~~l~~~l~~~~~~~~~~~~~~l~~~S~lG~Fvrr~~l~f~~l~F~~~~~L~~~ 159 (924)
..+|.. ......|...++.+|+.-|..+-.++........+...+.+...+....|+|+|+.++..-+|++-+.++.+
T Consensus 85 ~~dr~~--l~eegyy~~~nla~Lhe~fghl~al~eai~~aqe~~dh~~l~~~~~w~i~Lr~~~~~seq~Sv~~a~~f~~s 162 (482)
T KOG4322|consen 85 EYDRYS--LLEEGYYSLHNLADLHEIFGHLGALIEGIYDAQEEADHMLLSSSSLWSIFLRKCVVESEQFSVEQAVQFFKS 162 (482)
T ss_pred HHHhhh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHhccchHHHHHHhhhhhHHHHHHHHhhhhhHH
Confidence 001111 114444777788999998887655554433212223346889999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccccCCCCCCCchhHhhhhhhhcchhhhHHHHhhhHHHHHHHhhcchhhccccCccccccchhhhhhh
Q 002424 160 IGIYCKEALSSCSAYELPCLDDSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVS 239 (924)
Q Consensus 160 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~l~~~~~~~ 239 (924)
|-+|+.+... +. . ...+-+. --+++|... ..+.+++.+. .
T Consensus 163 ~Lq~~~~~~~-fq----------~------~a~~~W~----------lYGrhemA~-------~~s~~~llq~--a---- 202 (482)
T KOG4322|consen 163 FLQYRAPSMD-FQ----------H------EAIEFWK----------IYGRHELAN-------LASNKTLLQL--A---- 202 (482)
T ss_pred HHHhhccccC-cc----------h------hhhHHHH----------HhchhHHHH-------hhcchhHHHH--H----
Confidence 9999976420 00 0 0000000 001111100 0000011000 0
Q ss_pred cccccCCCCcccCCCCCCCCCCcccccccccCcccccchHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH-CCCc
Q 002424 240 AVSKSQGGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKHGSSFSLNAFELILRQLQKL-APEL 318 (924)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~e~~l~~qi~~l~~~~~~~p~~~l~~~~~~~~~~-~p~~ 318 (924)
.+++ + ..++-..++..-+.|++-.|+.+...|.. +..++.++... -...
T Consensus 203 --------------------l~s~--------a-~~~a~qg~~ql~~v~L~hKqrfp~~~~~a-~~wml~d~~~v~~~~~ 252 (482)
T KOG4322|consen 203 --------------------LGSI--------A-VSRSSQGIEQLTQVQLEHKQRFPCALPLA-MKWMLHDLLEVEENNL 252 (482)
T ss_pred --------------------HHHH--------H-HHHHhcchHHHHHHHHHHHHhcCCCcHHH-HHHHHHHhHHHHHhhh
Confidence 0000 0 01244455666677777788888777643 44444443322 3445
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhCChHHHHHHHHHHH
Q 002424 319 HRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAV 398 (924)
Q Consensus 319 ~~~~~l~~L~~~~~~dy~~A~d~Lh~yFD~~~~~~~~~r~~~~~~~~~~~~~~yall~la~~h~~fg~~~~A~~~l~Eai 398 (924)
...+|=.+++.|-.+||...+|++.| |+..+.. ..+..++|+++|...+|+++|+.++++.++.-.|
T Consensus 253 ~~~~~h~al~~~~g~d~~~svE~l~R-~A~il~A------------~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ 319 (482)
T KOG4322|consen 253 NTSYYHKALNSWFGGDYQQSVENLCR-FAHILHA------------DEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTI 319 (482)
T ss_pred hhhHHHHHHHHhhcchHHhhHHHHHH-HHHHHHH------------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 56889999999999999999999999 9998742 1257899999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHH
Q 002424 399 CLSQQHSNDTCLAYTLAAISNLL 421 (924)
Q Consensus 399 ~~Aqe~~D~~cl~~~l~wl~~l~ 421 (924)
.-+++.+|..|+++.++|.....
T Consensus 320 ae~~~~g~~a~l~lplaL~~~~~ 342 (482)
T KOG4322|consen 320 AEARESGDTACLNLPLALMFEFK 342 (482)
T ss_pred HHHHhcCCCchhhHHHHHHHHHH
Confidence 99999999999999999987433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.2e-08 Score=106.02 Aligned_cols=194 Identities=15% Similarity=0.065 Sum_probs=160.1
Q ss_pred CHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh
Q 002424 680 HLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK 759 (924)
Q Consensus 680 ~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~ 759 (924)
+|++|..++.++.. .+...|++.+|.+.+..+.......++....+.++...+.++..
T Consensus 30 ~~e~Aa~~y~~Aa~----------------------~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~ 87 (282)
T PF14938_consen 30 DYEEAADLYEKAAN----------------------CFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK 87 (282)
T ss_dssp HHHHHHHHHHHHHH----------------------HHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----------------------HHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 66677666666654 34567889999999999988888888888889999998888877
Q ss_pred cCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHh
Q 002424 760 SGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSF-GPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKC 838 (924)
Q Consensus 760 ~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~l-G~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~ 838 (924)
. ++..|+.++.+|+.+..+.|.....|.++..+|.++... |++ ++|++++++++......|.....+..+.-+|.+
T Consensus 88 ~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~--e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 88 G-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDY--EKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp T-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--H--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred h-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 6 999999999999999999999999999999999999888 888 999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCChHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 839 LLSDPSFSVSQNPEAVLDPLRQASEELQVLE-DHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 839 ~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~-~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
+.. .|++.+|++.+++....+.... .....++.+.....+|...||...+..+...|...
T Consensus 165 ~~~------l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 165 YAR------LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHH------TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHH------hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999 8999999999999877654443 34567777778888999999999988877776644
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.2e-07 Score=112.50 Aligned_cols=226 Identities=16% Similarity=0.107 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++..++..+...|++++|...++.+....|..... +. . . ..++..|++.+|...+++++...+ .+
T Consensus 145 ~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a--~~-~--~--~~l~~~g~~~eA~~~~~~~l~~~~----~~--- 210 (656)
T PRK15174 145 QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM--IA-T--C--LSFLNKSRLPEDHDLARALLPFFA----LE--- 210 (656)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH--HH-H--H--HHHHHcCCHHHHHHHHHHHHhcCC----Cc---
Confidence 456677777777888888887777665554432221 11 1 1 234567788888777777665311 01
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhh----hHHHHHHHHHHHHHhC
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVL----GIPYALASLSFCQLLN 781 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~----Al~~l~~AL~la~~~g 781 (924)
........+.++...|++++|++.+++++... .....++..+|.++...|+++. |+..+.+++.+.-
T Consensus 211 ~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P--- 281 (656)
T PRK15174 211 RQESAGLAVDTLCAVGKYQEAIQTGESALARG------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS--- 281 (656)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC---
Confidence 11223445666777778888877777776531 1225566777777777777764 5666666665531
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
..+.++..+|.++...|+. ++|+..+++++..- .+ ...++..+|.++.. .|++++|+..++++
T Consensus 282 ---~~~~a~~~lg~~l~~~g~~--~eA~~~l~~al~l~---P~---~~~a~~~La~~l~~------~G~~~eA~~~l~~a 344 (656)
T PRK15174 282 ---DNVRIVTLYADALIRTGQN--EKAIPLLQQSLATH---PD---LPYVRAMYARALRQ------VGQYTAASDEFVQL 344 (656)
T ss_pred ---CCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhC---CC---CHHHHHHHHHHHHH------CCCHHHHHHHHHHH
Confidence 1245666777777777776 77777777776541 11 23455667777777 77777777777776
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 002424 862 SEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 862 ~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~a 897 (924)
.+.- |. .......+|.++...|+.+++.++
T Consensus 345 l~~~-----P~-~~~~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 345 AREK-----GV-TSKWNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred HHhC-----cc-chHHHHHHHHHHHHCCCHHHHHHH
Confidence 6531 11 113344456667777777665543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.7e-07 Score=94.15 Aligned_cols=192 Identities=16% Similarity=0.071 Sum_probs=152.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++++|...+++++... |. ...+...++.++...|++++|.+.+++++.... ....++..
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l~~~-------p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~ 104 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKALEHD-------PD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP------NNGDVLNN 104 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-------cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHH
Confidence 67788999999999999998752 22 357888899999999999999999999987522 12457888
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|.++...|++.+|+..+.+++.... ......+...+|.++...|+. ++|...+++++...-. ...++
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~------~~~~~ 172 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDF--DKAEKYLTRALQIDPQ------RPESL 172 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCcC------ChHHH
Confidence 99999999999999999999987432 122345567789999999998 9999999999875322 24567
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFK 902 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~ 902 (924)
..+|.++.. .|++++|+.++++++... ....+.+..++.++...|+.+.+..+.....
T Consensus 173 ~~la~~~~~------~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 173 LELAELYYL------RGQYKDARAYLERYQQTY------NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHH------cCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 889999998 899999999999998872 1245566688999999999998777655443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.3e-06 Score=93.21 Aligned_cols=286 Identities=13% Similarity=-0.007 Sum_probs=152.7
Q ss_pred hHHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH
Q 002424 586 SSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL 665 (924)
Q Consensus 586 ~~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~ 665 (924)
..+...+..+...|...-+............... +.. ......+..+...|++++|.+.++++.+..|... ..+.
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~--~a~~ 81 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARA-TER--ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL--LALK 81 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC-CHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHH
Confidence 3455555666666654443221111122222222 222 2234567778889999999999998887765322 1111
Q ss_pred HHHhhHHHHHHH----cCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 002424 666 LKLQLLHERSLH----RGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN 741 (924)
Q Consensus 666 l~l~l~~~~al~----~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~g 741 (924)
+. ..+.. .|+...+...+... . + +......+...++.++...|++++|.+.++++++....
T Consensus 82 ~~-----~~~~~~~~~~~~~~~~~~~l~~~----~---~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-- 146 (355)
T cd05804 82 LH-----LGAFGLGDFSGMRDHVARVLPLW----A---P-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-- 146 (355)
T ss_pred Hh-----HHHHHhcccccCchhHHHHHhcc----C---c-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--
Confidence 00 11122 23333333222220 0 0 11123455555666666666666666666666553211
Q ss_pred cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH-
Q 002424 742 LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL- 820 (924)
Q Consensus 742 d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl- 820 (924)
...++..+|.++...|++++|+.++.+++..... .+........++|.++...|+. ++|+.++++++..-.
T Consensus 147 ----~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~--~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 147 ----DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDY--EAALAIYDTHIAPSAE 218 (355)
T ss_pred ----CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCH--HHHHHHHHHHhccccC
Confidence 1344555566666666666666666665554432 2223333444566666666665 666666655431100
Q ss_pred -----h-------------hC-----CHH--------------HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 821 -----G-------------HG-----GLE--------------LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 821 -----~-------------~g-----d~~--------------~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
. .| .++ .....-...+++.+. .|+.++|...++....
T Consensus 219 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~------~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 219 SDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG------AGDKDALDKLLAALKG 292 (355)
T ss_pred CChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc------CCCHHHHHHHHHHHHH
Confidence 0 00 000 000001123344444 7888999999999988
Q ss_pred HHHh---hcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 002424 864 ELQV---LEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYV 905 (924)
Q Consensus 864 ~f~~---l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~ 905 (924)
..+. .+.....-.+...+|.++...|+.+++.+.......+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 293 RASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888 67777788899999999999999999877555554444
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-07 Score=108.38 Aligned_cols=259 Identities=13% Similarity=0.040 Sum_probs=185.8
Q ss_pred hHHHHhHHHHHHhhcCCC-CChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc------hHHHHHHHhh---
Q 002424 601 APLTRVNTLIYATCFSDG-SSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK------SRILLLKLQL--- 670 (924)
Q Consensus 601 ~~ls~~~~~~~~~~~~~~-~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~------~~~~~l~l~l--- 670 (924)
..++.-.+.-++.+|..- .-.-+...+++++|.++...++|++|.+.|+.+..+-|-.-+ ...|+++..+
T Consensus 328 ~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls 407 (638)
T KOG1126|consen 328 RSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS 407 (638)
T ss_pred HHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH
Confidence 344444555455555441 001122488999999999999999999999988876442211 1134433110
Q ss_pred -H------------------HHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002424 671 -L------------------HERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAH 731 (924)
Q Consensus 671 -~------------------~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~ 731 (924)
+ +-..-.+++++.|..++.++..+ ||. -+.+..+.|.=+....+|+.|+..++
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl-------dp~-faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL-------DPR-FAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-------CCc-cchhhhhcCChhhhhHHHHhHHHHHH
Confidence 0 01223488999999999999886 432 46778888888899999999999999
Q ss_pred HHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 002424 732 SLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNL 811 (924)
Q Consensus 732 ~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~l 811 (924)
.++. .....-+++..+|.||.+.++++.|..++.+|+.+-=. -...++++|.++.++|.. ++|+++
T Consensus 480 ~Al~------~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~------nsvi~~~~g~~~~~~k~~--d~AL~~ 545 (638)
T KOG1126|consen 480 KALG------VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS------NSVILCHIGRIQHQLKRK--DKALQL 545 (638)
T ss_pred hhhc------CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc------chhHHhhhhHHHHHhhhh--hHHHHH
Confidence 8875 23345789999999999999999999999999887521 125577899999999999 999999
Q ss_pred HHHHHhHHHhhC-CHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCC
Q 002424 812 IQQALPLILGHG-GLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGR 890 (924)
Q Consensus 812 Le~aLp~vl~~g-d~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd 890 (924)
+++|+-+=.... .++.+| ..+.. .+++.+|+..|++-.++. ..+.-|++++|.+|..+|.
T Consensus 546 ~~~A~~ld~kn~l~~~~~~-------~il~~------~~~~~eal~~LEeLk~~v------P~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 546 YEKAIHLDPKNPLCKYHRA-------SILFS------LGRYVEALQELEELKELV------PQESSVFALLGKIYKRLGN 606 (638)
T ss_pred HHHHHhcCCCCchhHHHHH-------HHHHh------hcchHHHHHHHHHHHHhC------cchHHHHHHHHHHHHHHcc
Confidence 999976522211 123333 33444 677888888888776654 6889999999999999999
Q ss_pred HHHHHHHHHH
Q 002424 891 LAEREEAAAL 900 (924)
Q Consensus 891 ~~~r~~aa~~ 900 (924)
...+-..--.
T Consensus 607 ~~~Al~~f~~ 616 (638)
T KOG1126|consen 607 TDLALLHFSW 616 (638)
T ss_pred chHHHHhhHH
Confidence 8886653333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.1e-05 Score=94.59 Aligned_cols=249 Identities=15% Similarity=0.056 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++..|+.++...|+|..+..+.+++...-. .+. -...-.++++ +.+-.+|+|+.|-..|-+++.- |+..
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-~~~-~~aes~Y~~g-Rs~Ha~Gd~ekA~~yY~~s~k~-------~~d~ 340 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTE-NKS-IKAESFYQLG-RSYHAQGDFEKAFKYYMESLKA-------DNDN 340 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-hhH-HHHHHHHHHH-HHHHhhccHHHHHHHHHHHHcc-------CCCC
Confidence 6788999999999999999999888875421 110 0011122222 4455799999999999998873 3334
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcC----ChhhhHHHHHHHHHHHHHhC
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG----NAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G----~~~~Al~~l~~AL~la~~~g 781 (924)
-...++.+|.+++..|++++|..+++..+.. ......++..+|.+|...+ ..++|..++..++...
T Consensus 341 ~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~---- 410 (1018)
T KOG2002|consen 341 FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT---- 410 (1018)
T ss_pred ccccccchhHHHHHhchHHHHHHHHHHHHHh------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc----
Confidence 5677889999999999999999999988763 3445778889999999887 3456666666665554
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
..-+.+.+.||.+|. .+++ ..++..+..++......+.. ..-..++.+|-.|+. .|.+.+|.+++..|
T Consensus 411 --~~d~~a~l~laql~e-~~d~--~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~------~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 411 --PVDSEAWLELAQLLE-QTDP--WASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFR------LGNIEKALEHFKSA 478 (1018)
T ss_pred --cccHHHHHHHHHHHH-hcCh--HHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHH------hcChHHHHHHHHHH
Confidence 334567788999986 6666 77899999999998888877 778889999999998 89999999999999
Q ss_pred HHHHHhhcCHHH----HHHHHHHHHHHHHhcCCHHHHHH-----------HHHHHHHHHH
Q 002424 862 SEELQVLEDHEL----AAEAFYLIAIVFDKLGRLAEREE-----------AAALFKEYVL 906 (924)
Q Consensus 862 ~~~f~~l~~~~~----~~~vl~~lA~l~~~lGd~~~r~~-----------aa~~f~~l~~ 906 (924)
+.......++.. .-...|.+|++...+++.+.+.+ +...|.+++.
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGC 538 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhH
Confidence 998664444433 12358999999999999998877 6777777763
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.4e-07 Score=111.61 Aligned_cols=227 Identities=17% Similarity=0.047 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
...++.++|.++.. |++++|...+.++....|. .. . .+.++ ......|++++|...++++... + + +
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd---~~-~--~L~lA-~al~~~Gr~eeAi~~~rka~~~-~---p-~- 541 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD---AW-Q--HRAVA-YQAYQVEDYATALAAWQKISLH-D---M-S- 541 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc---hH-H--HHHHH-HHHHHCCCHHHHHHHHHHHhcc-C---C-C-
Confidence 45667777777765 7788888877777766553 11 1 11111 3445778888888888776442 1 0 1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
....+..+.++...|++++|...+++++... ... ......++......|+++.|+..+.+++.+.-
T Consensus 542 ---~~a~~~la~all~~Gd~~eA~~~l~qAL~l~----P~~--~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P----- 607 (987)
T PRK09782 542 ---NEDLLAAANTAQAAGNGAARDRWLQQAEQRG----LGD--NALYWWLHAQRYIPGQPELALNDLTRSLNIAP----- 607 (987)
T ss_pred ---cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----Ccc--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-----
Confidence 1234566777778888888888887776631 111 22233344444556888888888877776532
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 784 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 784 ~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
. +.+...+|.++..+|+. ++|+..+++++..-- ..+.++..+|.++.. .|++++|+.++++|++
T Consensus 608 ~--~~a~~~LA~~l~~lG~~--deA~~~l~~AL~l~P------d~~~a~~nLG~aL~~------~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 608 S--ANAYVARATIYRQRHNV--PAAVSDLRAALELEP------NNSNYQAALGYALWD------SGDIAQSREMLERAHK 671 (987)
T ss_pred C--HHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCC------CCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHH
Confidence 1 34566777788788877 888888877766521 123567777777777 7778888888888776
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002424 864 ELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAAL 900 (924)
Q Consensus 864 ~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~ 900 (924)
.. ....++++.+|.++...|+.+++..+...
T Consensus 672 l~------P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 672 GL------PDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred hC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 53 13346777788888888887776654433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=8e-05 Score=92.65 Aligned_cols=196 Identities=13% Similarity=-0.030 Sum_probs=143.8
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 753 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~l 753 (924)
....+|+++++...++.+..... .....+..-.|..++..++.++|...+.+++..................+
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~-------~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L 373 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGY-------KMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDL 373 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCC-------CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHH
Confidence 45679999999999999976211 23568999999999999999999999999876321100011123334567
Q ss_pred HHHHHhcCChhhhHHHHHHHHHHHH-----------HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh
Q 002424 754 AEIHKKSGNAVLGIPYALASLSFCQ-----------LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH 822 (924)
Q Consensus 754 a~i~~~~G~~~~Al~~l~~AL~la~-----------~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~ 822 (924)
-..+..+|++++|..++.+...-.- .-+.++. .+...++.++.-.|+. .+|.+++++.+... =
T Consensus 374 ~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~--~~~~l~a~~~~~~gdl--~~Ae~~le~l~~~a--P 447 (822)
T PRK14574 374 YYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI--EGQTLLVQSLVALNDL--PTAQKKLEDLSSTA--P 447 (822)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH--HHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC--C
Confidence 7888999999999999987765211 2234444 4555577777779998 99999999996553 3
Q ss_pred CCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 002424 823 GGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAA 898 (924)
Q Consensus 823 gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa 898 (924)
|+.. ..+.+|.++.. +|.+.+|...++.|.... .....+...+|.++..+|+..+++...
T Consensus 448 ~n~~----l~~~~A~v~~~------Rg~p~~A~~~~k~a~~l~------P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 448 ANQN----LRIALASIYLA------RDLPRKAEQELKAVESLA------PRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred CCHH----HHHHHHHHHHh------cCCHHHHHHHHHHHhhhC------CccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4433 44578888888 999999999998887653 344677888999999999988876544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.9e-07 Score=114.13 Aligned_cols=196 Identities=11% Similarity=0.003 Sum_probs=150.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHH
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 707 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a 707 (924)
...+|..+...|++++|...++.+...-+ ....+ . ..+ ..++..|++.+|..++++++.+. |. ..
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p---~~~a~-~--~la-~all~~Gd~~eA~~~l~qAL~l~-------P~-~~ 576 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDM---SNEDL-L--AAA-NTAQAAGNGAARDRWLQQAEQRG-------LG-DN 576 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCC---CcHHH-H--HHH-HHHHHCCCHHHHHHHHHHHHhcC-------Cc-cH
Confidence 55567777789999999999998654322 11111 1 111 56678999999999999998752 21 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
.....++..+.+.|++++|+..+++++.. ++. ..++..+|.++.+.|+++.|+..+.+++.+.- ..+
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-----~P~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P------d~~ 643 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNI-----APS--ANAYVARATIYRQRHNVPAAVSDLRAALELEP------NNS 643 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCH
Confidence 33334555556679999999999999873 332 56889999999999999999999999988852 123
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 788 SATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 788 ~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
.++..+|.++...|+. ++|+.++++++..-- .-+.++..+|.++.. .|++++|+.++++|++.-
T Consensus 644 ~a~~nLG~aL~~~G~~--eeAi~~l~~AL~l~P------~~~~a~~nLA~al~~------lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 644 NYQAALGYALWDSGDI--AQSREMLERAHKGLP------DDPALIRQLAYVNQR------LDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCC------CCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHhcC
Confidence 6788899999999998 999999999977521 234688999999999 899999999999998755
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.2e-06 Score=95.01 Aligned_cols=227 Identities=10% Similarity=-0.048 Sum_probs=151.4
Q ss_pred ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccC
Q 002424 620 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 620 ~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~ 699 (924)
+.+..+..+..+|..+...|++++|...++++.+..|... ..+. ..+..+...|++++|...+++++.+.+
T Consensus 59 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~--~a~~----~lg~~~~~~g~~~~A~~~~~~Al~l~P--- 129 (296)
T PRK11189 59 TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA--DAYN----YLGIYLTQAGNFDAAYEAFDSVLELDP--- 129 (296)
T ss_pred CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH--HHHH----HHHHHHHHCCCHHHHHHHHHHHHHhCC---
Confidence 3456688899999999999999999999999998866432 1121 112677899999999999999998733
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
. ...++.++|.++...|++++|++.++.++.... .+. .+.+. ..+....+++.+|+..+.+++...
T Consensus 130 ----~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~---~~~~~--~~l~~~~~~~~~A~~~l~~~~~~~-- 195 (296)
T PRK11189 130 ----T-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDP---YRALW--LYLAESKLDPKQAKENLKQRYEKL-- 195 (296)
T ss_pred ----C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCH---HHHHH--HHHHHccCCHHHHHHHHHHHHhhC--
Confidence 2 356789999999999999999999999987532 122 12211 223456788999999987655322
Q ss_pred hCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 002424 780 LNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR 859 (924)
Q Consensus 780 ~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~ 859 (924)
..+.+ ..+.+...+|+...+++...+.+.+....+.+ ..-+.+++.||+++.. .|++++|+.+++
T Consensus 196 -~~~~~------~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~--~~~~ea~~~Lg~~~~~------~g~~~~A~~~~~ 260 (296)
T PRK11189 196 -DKEQW------GWNIVEFYLGKISEETLMERLKAGATDNTELA--ERLCETYFYLAKYYLS------LGDLDEAAALFK 260 (296)
T ss_pred -Ccccc------HHHHHHHHccCCCHHHHHHHHHhcCCCcHHHH--HHHHHHHHHHHHHHHH------CCCHHHHHHHHH
Confidence 11111 12344445777622223333333322222222 2346689999999999 999999999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 002424 860 QASEELQVLEDHELAAEAFYLIAIVFD 886 (924)
Q Consensus 860 ~A~~~f~~l~~~~~~~~vl~~lA~l~~ 886 (924)
+|++.- ..+....+-++..+..+..
T Consensus 261 ~Al~~~--~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 261 LALANN--VYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHHHhC--CchHHHHHHHHHHHHHHHh
Confidence 998642 2233444444444544433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.1e-06 Score=91.91 Aligned_cols=217 Identities=19% Similarity=0.126 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..+...||.++..+|+.|.|+.+.+....+ |.++..+ ..+.++-++.-++..|=++.|+.++.++.. .++
T Consensus 69 ~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~q-r~lAl~qL~~Dym~aGl~DRAE~~f~~L~d--------e~e 138 (389)
T COG2956 69 FEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQ-RLLALQQLGRDYMAAGLLDRAEDIFNQLVD--------EGE 138 (389)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHhc--------chh
Confidence 456778999999999999999998866644 4454443 222323222778899999999999999865 355
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
..-.++..+..++....+++.|++..+++...-. -......+...+.+|+-+....+.++|+..+.+|+....+
T Consensus 139 fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~-q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~----- 212 (389)
T COG2956 139 FAEGALQQLLNIYQATREWEKAIDVAERLVKLGG-QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK----- 212 (389)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-----
Confidence 6778899999999999999999999998766421 1223445888999999999999999999999999887643
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
-.+|-..||.+.+..|+. ++|.+.++.++.+ ++.-...+.-.|..||.. .|++++.+.+|.++.+.
T Consensus 213 -cvRAsi~lG~v~~~~g~y--~~AV~~~e~v~eQ-----n~~yl~evl~~L~~~Y~~------lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 213 -CVRASIILGRVELAKGDY--QKAVEALERVLEQ-----NPEYLSEVLEMLYECYAQ------LGKPAEGLNFLRRAMET 278 (389)
T ss_pred -ceehhhhhhHHHHhccch--HHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHH------hCCHHHHHHHHHHHHHc
Confidence 246677799999999988 9999999999876 666778888899999999 99999999999998876
Q ss_pred HHhhcCH
Q 002424 865 LQVLEDH 871 (924)
Q Consensus 865 f~~l~~~ 871 (924)
+......
T Consensus 279 ~~g~~~~ 285 (389)
T COG2956 279 NTGADAE 285 (389)
T ss_pred cCCccHH
Confidence 6544433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.7e-06 Score=85.24 Aligned_cols=219 Identities=19% Similarity=0.112 Sum_probs=161.3
Q ss_pred HHHhHHHHHHhhcCCCCC-----hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHH
Q 002424 603 LTRVNTLIYATCFSDGSS-----LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLH 677 (924)
Q Consensus 603 ls~~~~~~~~~~~~~~~~-----~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~ 677 (924)
++.+.++....|.++..+ ....+.+...||.-+..+|++..|..-|+.|++.-|..-. .|.+.- ..+-.
T Consensus 8 i~lv~~La~~~cvt~~~~~~~~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~--a~~~~A----~~Yq~ 81 (250)
T COG3063 8 ISLVFSLALGACVTDPAPSRQTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYL--AHLVRA----HYYQK 81 (250)
T ss_pred HHHHHHHhhhcccCCCCccccccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH--HHHHHH----HHHHH
Confidence 344445544556666443 4566778889999999999999999999999988654322 232221 56778
Q ss_pred cCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH
Q 002424 678 RGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIH 757 (924)
Q Consensus 678 ~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~ 757 (924)
.|+.+.|.+.+++++.+.+. ...++++-|..++.+|+|++|+..+++++.. ..-....+++-++|.+.
T Consensus 82 ~Ge~~~A~e~YrkAlsl~p~--------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~----P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 82 LGENDLADESYRKALSLAPN--------NGDVLNNYGAFLCAQGRPEEAMQQFERALAD----PAYGEPSDTLENLGLCA 149 (250)
T ss_pred cCChhhHHHHHHHHHhcCCC--------ccchhhhhhHHHHhCCChHHHHHHHHHHHhC----CCCCCcchhhhhhHHHH
Confidence 99999999999999997543 4578999999999999999999999999872 33355688999999999
Q ss_pred HhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHH
Q 002424 758 KKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAK 837 (924)
Q Consensus 758 ~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr 837 (924)
.+.|++..|..++.++|.+=... ..++..++..+..-|+. ..|+..++.-. ..+. ..|..+.+..+
T Consensus 150 l~~gq~~~A~~~l~raL~~dp~~------~~~~l~~a~~~~~~~~y--~~Ar~~~~~~~----~~~~--~~A~sL~L~ir 215 (250)
T COG3063 150 LKAGQFDQAEEYLKRALELDPQF------PPALLELARLHYKAGDY--APARLYLERYQ----QRGG--AQAESLLLGIR 215 (250)
T ss_pred hhcCCchhHHHHHHHHHHhCcCC------ChHHHHHHHHHHhcccc--hHHHHHHHHHH----hccc--ccHHHHHHHHH
Confidence 99999999999999999885433 24556688888778887 88888877653 2222 45555555444
Q ss_pred hhhcCCCCCCCCChHHHHHHHH
Q 002424 838 CLLSDPSFSVSQNPEAVLDPLR 859 (924)
Q Consensus 838 ~~la~~~~~~~g~~~~Al~~L~ 859 (924)
.--. .|+...+-.|-.
T Consensus 216 iak~------~gd~~~a~~Y~~ 231 (250)
T COG3063 216 IAKR------LGDRAAAQRYQA 231 (250)
T ss_pred HHHH------hccHHHHHHHHH
Confidence 4444 455555544433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-05 Score=90.87 Aligned_cols=238 Identities=13% Similarity=-0.015 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
+...+.+.+|..+..+|+|++|...++++.++-|..... ...+. ..+...|++++|..++.+.+...+. +
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~-~~~la-----~i~~~~g~~~eA~~~l~~~l~~~~~----~ 181 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWA-VHAVA-----HVLEMQGRFKEGIAFMESWRDTWDC----S 181 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHH-HHHHH-----HHHHHcCCHHHHHHHHHhhhhccCC----C
Confidence 335677889999999999999999999999886643211 11122 5778899999999999999886432 3
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~ 782 (924)
+.........++.++...|++++|++.+++++..-. .............+...+...|....+... ............
T Consensus 182 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~ 259 (355)
T cd05804 182 SMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA-ESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFP 259 (355)
T ss_pred cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc-CCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcC
Confidence 344556677899999999999999999998853210 001111110110222233344433222222 111122211111
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh---hCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 002424 783 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG---HGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR 859 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~---~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~ 859 (924)
.........+.+.+....|+. ++|..+++.+...... .+..........+.|-++.+ .|++++|+..|.
T Consensus 260 ~~~~~~~~~~~a~~~~~~~~~--~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~------~g~~~~A~~~L~ 331 (355)
T cd05804 260 DHGLAFNDLHAALALAGAGDK--DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA------EGNYATALELLG 331 (355)
T ss_pred cccchHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH------cCCHHHHHHHHH
Confidence 111112223466666778877 9999999999998888 66777778888888888888 899999999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHH
Q 002424 860 QASEELQVLEDHELAAEAFYL 880 (924)
Q Consensus 860 ~A~~~f~~l~~~~~~~~vl~~ 880 (924)
.|+.....+|--..|.+|+..
T Consensus 332 ~al~~a~~~ggs~aq~~~~~~ 352 (355)
T cd05804 332 PVRDDLARIGGSHAQRDVFEQ 352 (355)
T ss_pred HHHHHHHHhCCcHHHHHHHHH
Confidence 999999999999999988754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.7e-06 Score=100.43 Aligned_cols=225 Identities=12% Similarity=-0.019 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHH---------ccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhh
Q 002424 625 ALAHVKLIQHLAV---------FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMA 695 (924)
Q Consensus 625 ~~a~~~La~~~a~---------~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~ 695 (924)
..+++.+|.++.. .|++++|...+++|.+.-|..... +..+. ..+...|++++|..++++++.+.
T Consensus 295 a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a-~~~lg-----~~~~~~g~~~~A~~~~~~Al~l~ 368 (553)
T PRK12370 295 IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA-LGLLG-----LINTIHSEYIVGSLLFKQANLLS 368 (553)
T ss_pred HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH-HHHHH-----HHHHHccCHHHHHHHHHHHHHhC
Confidence 3456666665543 345899999999999876643221 11122 46678999999999999999873
Q ss_pred hccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHH
Q 002424 696 SSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLS 775 (924)
Q Consensus 696 ~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~ 775 (924)
+ . .+.+++.+|.++...|++++|++.++++++.. +.. ..+...++.++...|++++|+..+.+++.
T Consensus 369 P-------~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-----P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 369 P-------I-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-----PTR-AAAGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred C-------C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCC-hhhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3 2 35678899999999999999999999998852 221 12233455567778999999999888765
Q ss_pred HHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 002424 776 FCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVL 855 (924)
Q Consensus 776 la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al 855 (924)
... .....++..+|.++..+|+. ++|+..++++++.-- ....+...++..++. .| ++|.
T Consensus 435 ~~~-----p~~~~~~~~la~~l~~~G~~--~eA~~~~~~~~~~~~------~~~~~~~~l~~~~~~------~g--~~a~ 493 (553)
T PRK12370 435 QHL-----QDNPILLSMQVMFLSLKGKH--ELARKLTKEISTQEI------TGLIAVNLLYAEYCQ------NS--ERAL 493 (553)
T ss_pred hcc-----ccCHHHHHHHHHHHHhCCCH--HHHHHHHHHhhhccc------hhHHHHHHHHHHHhc------cH--HHHH
Confidence 431 11123556789999899998 999999988766522 123344556666665 45 3666
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 856 DPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 856 ~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
..+++.++....-.. -.+..+.+|...|+.+.+..
T Consensus 494 ~~l~~ll~~~~~~~~------~~~~~~~~~~~~g~~~~~~~ 528 (553)
T PRK12370 494 PTIREFLESEQRIDN------NPGLLPLVLVAHGEAIAEKM 528 (553)
T ss_pred HHHHHHHHHhhHhhc------CchHHHHHHHHHhhhHHHHH
Confidence 667765554442221 12237888888888776443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00026 Score=88.13 Aligned_cols=247 Identities=8% Similarity=-0.100 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHH--HHHHHhhHHHHHH-----HcCCHHHHHHHHHHHhhhhhcc
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI--LLLKLQLLHERSL-----HRGHLKLAQKVCDELGVMASSV 698 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~--~~l~l~l~~~~al-----~~G~~~~A~~~l~~ll~l~~~~ 698 (924)
.++..+...+...|-...|+++..+--..|......++ ..+...+ ..++ ...++..+...+.+...+....
T Consensus 204 e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~v--r~a~~~~~~~~~r~~~~d~ala~~~~l~~~~ 281 (822)
T PRK14574 204 EVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQV--RMAVLPTRSETERFDIADKALADYQNLLTRW 281 (822)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHH--hhcccccccchhhHHHHHHHHHHHHHHHhhc
Confidence 45577778888889988998877743333322111111 0111111 1111 3456666666666665554332
Q ss_pred CCCCcc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHH
Q 002424 699 TGVDMD---LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLS 775 (924)
Q Consensus 699 ~~~D~~---~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~ 775 (924)
+ .+|. ....+..-...++..+|++.++++.++.+... ....-..+.--.|..|+..++|++|++.+.+++.
T Consensus 282 ~-~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~-----~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 282 G-KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE-----GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred c-CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc-----CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 2 2332 22345555666678999999999999977542 2223355777889999999999999999988765
Q ss_pred HHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH----HH-------hhCCHHHHHHHHHHHHHhhhcCCC
Q 002424 776 FCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL----IL-------GHGGLELRARAFIAEAKCLLSDPS 844 (924)
Q Consensus 776 la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~----vl-------~~gd~~~~A~a~~~LAr~~la~~~ 844 (924)
-.-..............|--.++..|+. ++|..++++.... +. .-.+-+. .++.++|.++..
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~--~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~--~~~~l~a~~~~~--- 428 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQL--DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI--EGQTLLVQSLVA--- 428 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccH--HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH--HHHHHHHHHHHH---
Confidence 4311111111122223456666677776 9999999999862 21 1223334 566777777887
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 845 FSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 845 ~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
.|++.+|...+++.+... ..-..++..+|.++...|.+..+.+
T Consensus 429 ---~gdl~~Ae~~le~l~~~a------P~n~~l~~~~A~v~~~Rg~p~~A~~ 471 (822)
T PRK14574 429 ---LNDLPTAQKKLEDLSSTA------PANQNLRIALASIYLARDLPRKAEQ 471 (822)
T ss_pred ---cCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 899999999998876532 1222334455666666666555444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.5e-05 Score=88.51 Aligned_cols=288 Identities=14% Similarity=0.034 Sum_probs=172.1
Q ss_pred HHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHH
Q 002424 588 YLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLK 667 (924)
Q Consensus 588 ~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~ 667 (924)
..+.+.+-..-|...-+.-+-..+...+.+ +...+....+..+..+|+|++|.+.++.+.+..|.... .+.
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~-----~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~----~l~ 191 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAELAGN-----DNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKE----VLK 191 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-----CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHH
Confidence 344455555556555554433222221211 11122334477778899999999999988877664332 111
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHH
Q 002424 668 LQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENA 747 (924)
Q Consensus 668 l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a 747 (924)
.....++..|+|++|.+.+.++... .+. ++............-++..|+.+++.+.+..+..... ...+...
T Consensus 192 --ll~~~~~~~~d~~~a~~~l~~l~k~--~~~--~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p--~~~~~~~ 263 (409)
T TIGR00540 192 --LAEEAYIRSGAWQALDDIIDNMAKA--GLF--DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP--RHRRHNI 263 (409)
T ss_pred --HHHHHHHHHhhHHHHHHHHHHHHHc--CCC--CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC--HHHhCCH
Confidence 1126778999999999999988863 111 2221112222222222344455555555555544110 0112357
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHH
Q 002424 748 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLEL 827 (924)
Q Consensus 748 ~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~ 827 (924)
++....|..+...|+++.|+..+.+++.......... ...+ .....+.-++. +++++.++..+.. .-+++.
T Consensus 264 ~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~---~~~l-~~~~~l~~~~~--~~~~~~~e~~lk~--~p~~~~- 334 (409)
T TIGR00540 264 ALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS---LPLC-LPIPRLKPEDN--EKLEKLIEKQAKN--VDDKPK- 334 (409)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch---hHHH-HHhhhcCCCCh--HHHHHHHHHHHHh--CCCChh-
Confidence 7888899999999999999999999998754332111 1112 22222334555 7888888887643 223322
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 002424 828 RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLA 907 (924)
Q Consensus 828 ~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~~ 907 (924)
+..+..||+++.. .|++.+|.+++++|...-. -.++. +...+|.++..+|+.+++.++...-...-.+
T Consensus 335 -~~ll~sLg~l~~~------~~~~~~A~~~le~a~a~~~-~p~~~----~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~ 402 (409)
T TIGR00540 335 -CCINRALGQLLMK------HGEFIEAADAFKNVAACKE-QLDAN----DLAMAADAFDQAGDKAEAAAMRQDSLGLMLA 402 (409)
T ss_pred -HHHHHHHHHHHHH------cccHHHHHHHHHHhHHhhc-CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 5788899999999 8999999999995433221 12222 3447899999999999987776666566566
Q ss_pred hhccCC
Q 002424 908 LENENR 913 (924)
Q Consensus 908 ~~~~~~ 913 (924)
++.+.|
T Consensus 403 ~~~~~~ 408 (409)
T TIGR00540 403 IQDNIP 408 (409)
T ss_pred ccccCC
Confidence 655433
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.9e-06 Score=100.24 Aligned_cols=213 Identities=9% Similarity=-0.080 Sum_probs=147.7
Q ss_pred ccCHHHHHHHHHHHHHHhhccCchHHHHHHHh-h-HHH--HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHH
Q 002424 638 FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQ-L-LHE--RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRH 713 (924)
Q Consensus 638 ~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~-l-~~~--~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~ 713 (924)
.+++++|.+.+++|.+.-|....... .+... . ... .....|++.+|...+++++.+ ||. ...++..+
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~-~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l-------dP~-~~~a~~~l 344 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYC-ALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL-------DHN-NPQALGLL 344 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHH-HHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc-------CCC-CHHHHHHH
Confidence 35688999999999988764432211 11110 0 000 111456799999999999986 222 35678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHH
Q 002424 714 ARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTL 793 (924)
Q Consensus 714 a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~L 793 (924)
|.++...|++++|...++++++.. ...+.++..+|.++...|++++|+..+.+|+.+.-.. . .+...+
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l~------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~--~----~~~~~~ 412 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLLS------PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR--A----AAGITK 412 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--h----hhHHHH
Confidence 999999999999999999998852 2235678899999999999999999999998885321 1 122234
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHH
Q 002424 794 AELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHEL 873 (924)
Q Consensus 794 a~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~ 873 (924)
+.++...|.. ++|+..+++++.... .....++..+|.++.. .|++++|...+++..... ..
T Consensus 413 ~~~~~~~g~~--eeA~~~~~~~l~~~~-----p~~~~~~~~la~~l~~------~G~~~eA~~~~~~~~~~~------~~ 473 (553)
T PRK12370 413 LWITYYHTGI--DDAIRLGDELRSQHL-----QDNPILLSMQVMFLSL------KGKHELARKLTKEISTQE------IT 473 (553)
T ss_pred HHHHHhccCH--HHHHHHHHHHHHhcc-----ccCHHHHHHHHHHHHh------CCCHHHHHHHHHHhhhcc------ch
Confidence 4456668887 999999888764421 1123467888999988 899999999987754332 12
Q ss_pred HHHHHHHHHHHHHhcCC
Q 002424 874 AAEAFYLIAIVFDKLGR 890 (924)
Q Consensus 874 ~~~vl~~lA~l~~~lGd 890 (924)
.-.....++.+|...|+
T Consensus 474 ~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 474 GLIAVNLLYAEYCQNSE 490 (553)
T ss_pred hHHHHHHHHHHHhccHH
Confidence 33345566777777774
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.0035 Score=70.79 Aligned_cols=215 Identities=18% Similarity=0.137 Sum_probs=166.0
Q ss_pred HcCCHHHHHHHHHHHhhhhhccCCCCcc------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc----chhH
Q 002424 677 HRGHLKLAQKVCDELGVMASSVTGVDMD------LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL----QVEN 746 (924)
Q Consensus 677 ~~G~~~~A~~~l~~ll~l~~~~~~~D~~------~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd----~~~~ 746 (924)
-.|-+++|..+-+.++....++.-.|.. .....+-.++-+-+-+||+.+|++-+.++...|.+... +...
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 4788889998888887765555433311 11233345566668899999999999999999988665 3556
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC-----------------------
Q 002424 747 ASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN----------------------- 803 (924)
Q Consensus 747 a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~----------------------- 803 (924)
+...+++|.--...|.++.|..++..|..+-.. ..+.|-+..++|-+|+..|+.
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~---~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTES---IDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH---HHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHH
Confidence 778889998888899999999999988877543 345777788899999888773
Q ss_pred ----------------hHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 002424 804 ----------------HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 867 (924)
Q Consensus 804 ----------------~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~ 867 (924)
.+.+|...+++.|...-.-+-..+.|+.+.+|+.+... .|+..++...++-|..+..+
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~ls------lgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLS------LGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHH------hcchHHHHhccchHHHHHhc
Confidence 45788888888888887677777888888888877777 78888888888888888889
Q ss_pred hcCHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHH
Q 002424 868 LEDHELAAEAFYLIAIVFDKLGR--LAEREEAAAL 900 (924)
Q Consensus 868 l~~~~~~~~vl~~lA~l~~~lGd--~~~r~~aa~~ 900 (924)
+.|..-+-=....+-.+|...|+ .+..+++...
T Consensus 518 i~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 518 IPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred CCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 98888888888888888888888 5555554443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.6e-06 Score=94.57 Aligned_cols=231 Identities=13% Similarity=0.049 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
..+.-.+.....+|++++|...++++.+..+...... .... ...++..|++++|.+.++++....+ .
T Consensus 119 l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~-~l~~----a~l~l~~g~~~~Al~~l~~~~~~~P-------~- 185 (398)
T PRK10747 119 VNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPV-EITR----VRIQLARNENHAARHGVDKLLEVAP-------R- 185 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHH-HHHH----HHHHHHCCCHHHHHHHHHHHHhcCC-------C-
Confidence 3344445555778999999999998876544221111 1111 1677889999999999988877532 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------------------Hcc--------------cchhHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCY----------------------KFN--------------LQVENASV 749 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~----------------------~~g--------------d~~~~a~a 749 (924)
...++..++.++.+.|++++|++.+..+...-. ... .......+
T Consensus 186 ~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~ 265 (398)
T PRK10747 186 HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVAL 265 (398)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHH
Confidence 347778888888999999999977766552100 000 00011335
Q ss_pred HHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHH
Q 002424 750 LLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRA 829 (924)
Q Consensus 750 l~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A 829 (924)
....|..+...|+.+.|...+.+++... .++ ......+.+ ..|++ +++++.+++.+.. +. .-+
T Consensus 266 ~~~~A~~l~~~g~~~~A~~~L~~~l~~~---~~~----~l~~l~~~l--~~~~~--~~al~~~e~~lk~---~P---~~~ 328 (398)
T PRK10747 266 QVAMAEHLIECDDHDTAQQIILDGLKRQ---YDE----RLVLLIPRL--KTNNP--EQLEKVLRQQIKQ---HG---DTP 328 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCH----HHHHHHhhc--cCCCh--HHHHHHHHHHHhh---CC---CCH
Confidence 6677888999999999999998887622 122 111122322 34776 8888888877643 22 234
Q ss_pred HHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002424 830 RAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAA 899 (924)
Q Consensus 830 ~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~ 899 (924)
..++.+|+.++. .+++.+|.++++++++.- |. ..++..+|.++...|+.+++.++-.
T Consensus 329 ~l~l~lgrl~~~------~~~~~~A~~~le~al~~~-----P~--~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 329 LLWSTLGQLLMK------HGEWQEASLAFRAALKQR-----PD--AYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHHHHHHHHHHH------CCCHHHHHHHHHHHHhcC-----CC--HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 578889999999 899999999999998752 22 2445689999999999988766544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.7e-06 Score=95.51 Aligned_cols=228 Identities=14% Similarity=0.067 Sum_probs=169.3
Q ss_pred HHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHH
Q 002424 589 LLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKL 668 (924)
Q Consensus 589 ~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l 668 (924)
...+.+|-.--...++.+.-.+ . -. +...+ .+.|.+|..+..|++++.|+..+++|.++=+.... .-.+
T Consensus 392 iyST~LWHLq~~v~Ls~Laq~L-i-~~-~~~sP----esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY----ayTL 460 (638)
T KOG1126|consen 392 IYSTTLWHLQDEVALSYLAQDL-I-DT-DPNSP----ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY----AYTL 460 (638)
T ss_pred HHHHHHHHHHhhHHHHHHHHHH-H-hh-CCCCc----HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch----hhhh
Confidence 3455677665555666554432 1 12 22223 45788999999999999999999998876332221 1111
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHH
Q 002424 669 QLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENAS 748 (924)
Q Consensus 669 ~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~ 748 (924)
.+.-.....+++.|...++.++.. ||. .-.+++.+|.++++++.++.|.-.++.++.+ -.....
T Consensus 461 --lGhE~~~~ee~d~a~~~fr~Al~~-------~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I------NP~nsv 524 (638)
T KOG1126|consen 461 --LGHESIATEEFDKAMKSFRKALGV-------DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI------NPSNSV 524 (638)
T ss_pred --cCChhhhhHHHHhHHHHHHhhhcC-------Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcC------Cccchh
Confidence 114556788999999999999875 333 5789999999999999999999999999874 223355
Q ss_pred HHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHH
Q 002424 749 VLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELR 828 (924)
Q Consensus 749 al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~ 828 (924)
.+.-.|.++.+.|+.++|+..+.+|+.+=... ...+...|.++..+|+. .+|+..||+.-..+- .+
T Consensus 525 i~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn------~l~~~~~~~il~~~~~~--~eal~~LEeLk~~vP------~e 590 (638)
T KOG1126|consen 525 ILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN------PLCKYHRASILFSLGRY--VEALQELEELKELVP------QE 590 (638)
T ss_pred HHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC------chhHHHHHHHHHhhcch--HHHHHHHHHHHHhCc------ch
Confidence 67888999999999999999999998764322 23456678888889998 999999999877765 67
Q ss_pred HHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 829 ARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 829 A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
+-+++++|++|.. .|....|+..+.=|.+
T Consensus 591 s~v~~llgki~k~------~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 591 SSVFALLGKIYKR------LGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHHHHH------HccchHHHHhhHHHhc
Confidence 8899999999998 7777777776665543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.1e-05 Score=87.20 Aligned_cols=221 Identities=14% Similarity=-0.062 Sum_probs=142.4
Q ss_pred ccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHH
Q 002424 638 FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTL 717 (924)
Q Consensus 638 ~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll 717 (924)
.++.+.+++.+.+++...+ ..+........+.+ ..+...|++.+|...+.+++.+. |. ...+++.+|.++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~-~~~~~~a~~~~~~g-~~~~~~g~~~~A~~~~~~Al~l~-------P~-~~~a~~~lg~~~ 108 (296)
T PRK11189 39 TLQQEVILARLNQILASRD-LTDEERAQLHYERG-VLYDSLGLRALARNDFSQALALR-------PD-MADAYNYLGIYL 108 (296)
T ss_pred chHHHHHHHHHHHHHcccc-CCcHhhHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHcC-------CC-CHHHHHHHHHHH
Confidence 3556778888877775433 22221111111111 56778999999999999999862 22 368899999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Q 002424 718 LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELW 797 (924)
Q Consensus 718 ~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~ 797 (924)
...|++++|++.+++++++. .....++..+|.++...|+++.|+..+.+++.+.-. ++. .. . ...+.
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~------P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~--~~~-~~-~---~~~l~ 175 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELD------PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN--DPY-RA-L---WLYLA 175 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHH-HH-H---HHHHH
Confidence 99999999999999998742 222557899999999999999999999999876422 221 11 1 11122
Q ss_pred HHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhh-cCHHHHHH
Q 002424 798 LSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL-EDHELAAE 876 (924)
Q Consensus 798 ~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l-~~~~~~~~ 876 (924)
...+.. ++|+..+++.++.. ..+.+..+.++ +. .|+...+ ..++.+.+.++.. .-....++
T Consensus 176 ~~~~~~--~~A~~~l~~~~~~~--~~~~~~~~~~~-------~~------lg~~~~~-~~~~~~~~~~~~~~~l~~~~~e 237 (296)
T PRK11189 176 ESKLDP--KQAKENLKQRYEKL--DKEQWGWNIVE-------FY------LGKISEE-TLMERLKAGATDNTELAERLCE 237 (296)
T ss_pred HccCCH--HHHHHHHHHHHhhC--CccccHHHHHH-------HH------ccCCCHH-HHHHHHHhcCCCcHHHHHHHHH
Confidence 345666 99999998876432 11222222222 22 2333222 2344444333211 11245678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 002424 877 AFYLIAIVFDKLGRLAEREEAAA 899 (924)
Q Consensus 877 vl~~lA~l~~~lGd~~~r~~aa~ 899 (924)
+++.+|.++...|+.+++..+-.
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFK 260 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999998776543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.5e-07 Score=97.71 Aligned_cols=225 Identities=19% Similarity=0.107 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.....+|.+....|++++|...++++...=+ ....... .+. .. +..+++.+|..++...... .+ +
T Consensus 45 ~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~----~~~~~~~-~l~-~l-~~~~~~~~A~~~~~~~~~~---~~--~--- 109 (280)
T PF13429_consen 45 EYWRLLADLAWSLGDYDEAIEAYEKLLASDK----ANPQDYE-RLI-QL-LQDGDPEEALKLAEKAYER---DG--D--- 109 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc----ccccccc-ccc-cc-ccccccccccccccccccc---cc--c---
Confidence 3344456666666777777777775553311 1100000 011 22 5778888888777665442 11 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
...+...+.++...|+++++.+.++.+... ........++..+|.++.+.|++.+|+..+.+|+.+.-.
T Consensus 110 -~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~------ 178 (280)
T PF13429_consen 110 -PRYLLSALQLYYRLGDYDEAEELLEKLEEL----PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD------ 178 (280)
T ss_dssp ---------H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT------
T ss_pred -cchhhHHHHHHHHHhHHHHHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------
Confidence 233445666778888998888888876531 222355778999999999999999999999999888632
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
-..++..++.++...|.. +++..+++........... .+..+|.++.. .|++.+|+.++++++...
T Consensus 179 ~~~~~~~l~~~li~~~~~--~~~~~~l~~~~~~~~~~~~------~~~~la~~~~~------lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 179 DPDARNALAWLLIDMGDY--DEAREALKRLLKAAPDDPD------LWDALAAAYLQ------LGRYEEALEYLEKALKLN 244 (280)
T ss_dssp -HHHHHHHHHHHCTTCHH--HHHHHHHHHHHHH-HTSCC------HCHHHHHHHHH------HT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHCCCh--HHHHHHHHHHHHHCcCHHH------HHHHHHHHhcc------cccccccccccccccccc
Confidence 123455677777677776 8888888887777644443 44567788888 899999999999987632
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 866 QVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 866 ~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
=.+ -.++..+|.++...|+.+++.+
T Consensus 245 --p~d----~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 245 --PDD----PLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp --TT-----HHHHHHHHHHHT----------
T ss_pred --ccc----cccccccccccccccccccccc
Confidence 122 3456678899999999988665
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.9e-05 Score=84.10 Aligned_cols=181 Identities=15% Similarity=0.045 Sum_probs=135.1
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
.+.....+..+|..+...|+|++|...++++...+|........... ++ ..+...|++.+|...+++++...+.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~--la-~~~~~~~~~~~A~~~~~~~l~~~p~--- 102 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLD--LA-YAYYKSGDYAEAIAAADRFIRLHPN--- 102 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHH--HH-HHHHhcCCHHHHHHHHHHHHHHCcC---
Confidence 34556788999999999999999999999999887744322111111 11 6778899999999999999987552
Q ss_pred CCcchHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHcccchhHH------------HHHHHHHHHHHhc
Q 002424 701 VDMDLKTEASLRHARTLLAA--------NQFSEAAAVAHSLFCMCYKFNLQVENA------------SVLLLLAEIHKKS 760 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~--------G~~~eAl~~l~~aL~~~~~~gd~~~~a------------~al~~la~i~~~~ 760 (924)
++. ...+.+.++.++... |++++|++.++.++......... ..+ .....+|.++...
T Consensus 103 -~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 179 (235)
T TIGR03302 103 -HPD-ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA-PDAKKRMDYLRNRLAGKELYVARFYLKR 179 (235)
T ss_pred -CCc-hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 222 346788888888876 89999999999988643321111 111 1234788999999
Q ss_pred CChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 002424 761 GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQA 815 (924)
Q Consensus 761 G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~a 815 (924)
|++..|+..+.+++...- .....+.++..+|.++..+|+. ++|..+++.+
T Consensus 180 g~~~~A~~~~~~al~~~p---~~~~~~~a~~~l~~~~~~lg~~--~~A~~~~~~l 229 (235)
T TIGR03302 180 GAYVAAINRFETVVENYP---DTPATEEALARLVEAYLKLGLK--DLAQDAAAVL 229 (235)
T ss_pred CChHHHHHHHHHHHHHCC---CCcchHHHHHHHHHHHHHcCCH--HHHHHHHHHH
Confidence 999999999998876632 2345578889999999999998 9999987765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.4e-06 Score=84.84 Aligned_cols=140 Identities=16% Similarity=0.074 Sum_probs=121.5
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
|+.-.+.+...+|.-++..||+..|..-++++|+.- ....+++..+|.+|...|+.+.|...+++|+.+.-..|
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G 103 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHD------PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG 103 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc
Confidence 555577888999999999999999999999999842 23377899999999999999999999999999987665
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
.++++.|.-+|..|.+ ++|...+++++ ........+.++-.+|-|-+. .|....|.++|++|
T Consensus 104 ------dVLNNYG~FLC~qg~~--~eA~q~F~~Al----~~P~Y~~~s~t~eN~G~Cal~------~gq~~~A~~~l~ra 165 (250)
T COG3063 104 ------DVLNNYGAFLCAQGRP--EEAMQQFERAL----ADPAYGEPSDTLENLGLCALK------AGQFDQAEEYLKRA 165 (250)
T ss_pred ------chhhhhhHHHHhCCCh--HHHHHHHHHHH----hCCCCCCcchhhhhhHHHHhh------cCCchhHHHHHHHH
Confidence 4689999999999987 99999999985 456777889999999999998 88888899999988
Q ss_pred HHHH
Q 002424 862 SEEL 865 (924)
Q Consensus 862 ~~~f 865 (924)
++.=
T Consensus 166 L~~d 169 (250)
T COG3063 166 LELD 169 (250)
T ss_pred HHhC
Confidence 8743
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1e-05 Score=98.68 Aligned_cols=133 Identities=17% Similarity=0.108 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 786 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 786 (924)
.++..++|.+..++|++++|.++++.+++.+- ....+...+|.+..+.+++++|+..+.+++...- ..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P------d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p------~~ 153 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFP------DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS------SS 153 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC------CC
Confidence 45555555555555555555555555544321 2234444555555555555555555555554432 12
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 787 ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 787 A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
+.++..+|.++.++|++ ++|.+++++++. .+. ..+.++..+|.++.. .|+.++|...+++|++.+
T Consensus 154 ~~~~~~~a~~l~~~g~~--~~A~~~y~~~~~---~~p---~~~~~~~~~a~~l~~------~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 154 AREILLEAKSWDEIGQS--EQADACFERLSR---QHP---EFENGYVGWAQSLTR------RGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHHHhcch--HHHHHHHHHHHh---cCC---CcHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHhh
Confidence 34445555555555555 555555555543 111 223444555555555 555555555555555544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00024 Score=78.75 Aligned_cols=236 Identities=18% Similarity=0.114 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHcc--CHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 626 LAHVKLIQHLAVFK--GYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 626 ~a~~~La~~~a~~G--~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+..||..++..+| ++.+|..+-..|+.+=+ +...++..-+..++..|+++.|.+.+..++.- |
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dr------yn~~a~~nkgn~~f~ngd~dka~~~ykeal~n-------d- 520 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNIDR------YNAAALTNKGNIAFANGDLDKAAEFYKEALNN-------D- 520 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhcccc------cCHHHhhcCCceeeecCcHHHHHHHHHHHHcC-------c-
Confidence 44566766666766 47777777666654311 11111111114667899999999999998872 3
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
..-.+++++.|...-.+|+.++|++++-.+-.+. ...+.+|..+|.||.-..++..|+++++++..+.- +++
T Consensus 521 asc~ealfniglt~e~~~~ldeald~f~klh~il------~nn~evl~qianiye~led~aqaie~~~q~~slip--~dp 592 (840)
T KOG2003|consen 521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL------LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIP--NDP 592 (840)
T ss_pred hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCC--CCH
Confidence 3367899999999999999999999987765543 34588999999999999999999999998876642 222
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHH-------HHhHHHhhCCHHH------H---------------HHHHHHH
Q 002424 784 LLKASATLTLAELWLSFGPNHAKMASNLIQQ-------ALPLILGHGGLEL------R---------------ARAFIAE 835 (924)
Q Consensus 784 ~~~A~al~~La~l~~~lG~~~~~~Al~lLe~-------aLp~vl~~gd~~~------~---------------A~a~~~L 835 (924)
.++..||++|-+-|+- .+|..++-. .++.+.=.+..+. + ....+..
T Consensus 593 ----~ilskl~dlydqegdk--sqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmi 666 (840)
T KOG2003|consen 593 ----AILSKLADLYDQEGDK--SQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMI 666 (840)
T ss_pred ----HHHHHHHHHhhcccch--hhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 3455688888777776 555444322 2222222222221 1 2223445
Q ss_pred HHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002424 836 AKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFK 902 (924)
Q Consensus 836 Ar~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~ 902 (924)
|-|.+. .|.+.+|.+.++.-..-| ..--+++..|.++.-.+|..+. .+++....
T Consensus 667 asc~rr------sgnyqka~d~yk~~hrkf------pedldclkflvri~~dlgl~d~-key~~kle 720 (840)
T KOG2003|consen 667 ASCFRR------SGNYQKAFDLYKDIHRKF------PEDLDCLKFLVRIAGDLGLKDA-KEYADKLE 720 (840)
T ss_pred HHHHHh------cccHHHHHHHHHHHHHhC------ccchHHHHHHHHHhccccchhH-HHHHHHHH
Confidence 556665 777777777776655444 2345677788888888887664 34444433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0028 Score=71.43 Aligned_cols=200 Identities=12% Similarity=0.011 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
++|-+|..++.+++.+.|...+++|+.+=|... ..|.+- +.-++...+-..|.+.++++..+.+ .|
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~--~aWTLm----GHEyvEmKNt~AAi~sYRrAvdi~p----~D---- 397 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYL--SAWTLM----GHEYVEMKNTHAAIESYRRAVDINP----RD---- 397 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchh--HHHHHh----hHHHHHhcccHHHHHHHHHHHhcCc----hh----
Confidence 468889999999999999999999997644322 234432 2677889999999999999988633 23
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 786 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 786 (924)
..+++.+|..+--++=+.=|+-.+++++.. ...-.|++..+|++|.+.++.+.|+-++.+|+..... +
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt------e 465 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALEL------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT------E 465 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhc------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc------c
Confidence 688999999999999999999999998763 3444778999999999999999999999999877653 5
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH---HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 002424 787 ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL---ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQAS 862 (924)
Q Consensus 787 A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~---~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~ 862 (924)
..++..||.+|..+++. ++|...++..+......|.. ..+|+++ ||+-... .+++.+|-.|..++.
T Consensus 466 ~~~l~~LakLye~l~d~--~eAa~~yek~v~~~~~eg~~~~~t~ka~~f--LA~~f~k------~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDL--NEAAQYYEKYVEVSELEGEIDDETIKARLF--LAEYFKK------MKDFDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhhcccchHHHHHHHH--HHHHHHh------hcchHHHHHHHHHHh
Confidence 67889999999999999 99999999999977554443 4456555 6655555 555666655555443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0023 Score=79.60 Aligned_cols=235 Identities=13% Similarity=0.030 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++..+...++..|++++|..+++.+.+.-..........+ ...+...|++++|..+++++.. + |
T Consensus 326 ~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L-----i~~y~k~G~~~~A~~vf~~m~~--~-----d--- 390 (697)
T PLN03081 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL-----VDLYSKWGRMEDARNVFDRMPR--K-----N--- 390 (697)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH-----HHHHHHCCCHHHHHHHHHhCCC--C-----C---
Confidence 34555666666666666666666655543110000000111 1445566777777777666532 1 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
..+++.++..+...|+.++|+++++++... |.... ......+-..+.+.|..++|..++..... .+|....
T Consensus 391 -~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~----g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~---~~g~~p~ 461 (697)
T PLN03081 391 -LISWNALIAGYGNHGRGTKAVEMFERMIAE----GVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSE---NHRIKPR 461 (697)
T ss_pred -eeeHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHH---hcCCCCC
Confidence 234666666777777777777777766542 32222 22333444555677777777766654432 2333221
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
......|.+++...|.. ++|.+++++. |. ..+ +.++..|...+.. .|+.+.|....++.++.
T Consensus 462 -~~~y~~li~~l~r~G~~--~eA~~~~~~~-~~---~p~----~~~~~~Ll~a~~~------~g~~~~a~~~~~~l~~~- 523 (697)
T PLN03081 462 -AMHYACMIELLGREGLL--DEAYAMIRRA-PF---KPT----VNMWAALLTACRI------HKNLELGRLAAEKLYGM- 523 (697)
T ss_pred -ccchHhHHHHHHhcCCH--HHHHHHHHHC-CC---CCC----HHHHHHHHHHHHH------cCCcHHHHHHHHHHhCC-
Confidence 12234466667777776 7777776542 21 111 2345555555554 56666666665554321
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 002424 866 QVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLA 907 (924)
Q Consensus 866 ~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~~ 907 (924)
+ ......+..++.+|...|+.+++.+.....++.|..
T Consensus 524 ---~--p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 524 ---G--PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred ---C--CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 1 112346788999999999999988888888777764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0021 Score=77.55 Aligned_cols=44 Identities=23% Similarity=0.213 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHhCChHHHHHHHHHHHHHH--------------HhcCChh-HHHHHH
Q 002424 371 EIALLCLGMMHFHFGHPKQALDVLTEAVCLS--------------QQHSNDT-CLAYTL 414 (924)
Q Consensus 371 ~yall~la~~h~~fg~~~~A~~~l~Eai~~A--------------qe~~D~~-cl~~~l 414 (924)
--.+|..|..-+--|++++|...+.|.|+++ ++.||.. |+++.|
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~l 197 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWL 197 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHH
Confidence 4578888888777799999999999999864 5667766 777766
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.4e-05 Score=80.56 Aligned_cols=174 Identities=14% Similarity=0.049 Sum_probs=129.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++.+|...++++....+. + .....+++.+|.++...|++++|++.+++++.... +......++..
T Consensus 41 ~~~~~~~~~~~A~~~~~~~~~~~p~----~-~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~ 112 (235)
T TIGR03302 41 KEALDSGDYTEAIKYFEALESRYPF----S-PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP---NHPDADYAYYL 112 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC----c-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---CCCchHHHHHH
Confidence 5678899999999999999886431 2 12456889999999999999999999999987543 22233457888
Q ss_pred HHHHHHhc--------CChhhhHHHHHHHHHHHHHhCCcH-----------HHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 002424 753 LAEIHKKS--------GNAVLGIPYALASLSFCQLLNLDL-----------LKASATLTLAELWLSFGPNHAKMASNLIQ 813 (924)
Q Consensus 753 la~i~~~~--------G~~~~Al~~l~~AL~la~~~g~~~-----------~~A~al~~La~l~~~lG~~~~~~Al~lLe 813 (924)
+|.++... |+++.|+..+.+++...-...... ........+|.+|...|+. .+|+..++
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~--~~A~~~~~ 190 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAY--VAAINRFE 190 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh--HHHHHHHH
Confidence 88888776 788899998887765432211110 0112234688999999998 99999999
Q ss_pred HHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 814 QALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 814 ~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
+++.. ..+....+.+++.+|+++.. .|++++|..+++.....|
T Consensus 191 ~al~~---~p~~~~~~~a~~~l~~~~~~------lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 191 TVVEN---YPDTPATEEALARLVEAYLK------LGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHH---CCCCcchHHHHHHHHHHHHH------cCCHHHHHHHHHHHHhhC
Confidence 98755 33334567889999999999 899999999887765443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00056 Score=75.76 Aligned_cols=243 Identities=18% Similarity=0.128 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
...-+=|..-...|+|..|..++.++.+ +++.. .+++-++.+.+=.+||++.|..++.++..+.. .|
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae----~~e~p--~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~----~~--- 151 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAE----HGEQP--VLAYLLAAEAAQQRGDEDRANRYLAEAAELAG----DD--- 151 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhh----cCcch--HHHHHHHHHHHHhcccHHHHHHHHHHHhccCC----Cc---
Confidence 3344445555668888888888775442 23322 22222222566788888888888888876421 13
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHH-------------
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALA------------- 772 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~------------- 772 (924)
...+....+++++.+||+..|...+.++++ ......+++.+..++|.++|++...+..+..
T Consensus 152 ~l~v~ltrarlll~~~d~~aA~~~v~~ll~------~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 152 TLAVELTRARLLLNRRDYPAARENVDQLLE------MTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred hHHHHHHHHHHHHhCCCchhHHHHHHHHHH------hCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 567777888888888888888888888775 3445577888888888888888766654410
Q ss_pred -----H----------------HHHHHHhCCcHHH--HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh-------
Q 002424 773 -----S----------------LSFCQLLNLDLLK--ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH------- 822 (924)
Q Consensus 773 -----A----------------L~la~~~g~~~~~--A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~------- 822 (924)
| |.-+++.--+..+ ......++.=+..+|.. ++|.++++++|+....-
T Consensus 226 ~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~--~~A~~~i~~~Lk~~~D~~L~~~~~ 303 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDH--DEAQEIIEDALKRQWDPRLCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHhccChhHHHHHh
Confidence 0 0011111111111 13334456666778988 99999999888753210
Q ss_pred ----CCHH--------------HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 002424 823 ----GGLE--------------LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIV 884 (924)
Q Consensus 823 ----gd~~--------------~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l 884 (924)
++.. .....+++||+.++. .+.+.+|-.+|+.|+..-.+.++ +..+|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k------~~~w~kA~~~leaAl~~~~s~~~-------~~~la~~ 370 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK------NKLWGKASEALEAALKLRPSASD-------YAELADA 370 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH------hhHHHHHHHHHHHHHhcCCChhh-------HHHHHHH
Confidence 1110 012456777777777 67788888888887776544444 4557778
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 002424 885 FDKLGRLAEREEAAALFK 902 (924)
Q Consensus 885 ~~~lGd~~~r~~aa~~f~ 902 (924)
|..+|++++++++-..-.
T Consensus 371 ~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 371 LDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHcCChHHHHHHHHHHH
Confidence 889999998877655443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0018 Score=73.22 Aligned_cols=207 Identities=13% Similarity=0.043 Sum_probs=153.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHH
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 707 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a 707 (924)
+..+|..++.+.+-.+-...+..|..+=|...+-- .+.. ...+..++|++|..-++.+.+| ||+ .+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvY-yHRg-----Qm~flL~q~e~A~aDF~Kai~L-------~pe-~~ 428 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVY-YHRG-----QMRFLLQQYEEAIADFQKAISL-------DPE-NA 428 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchh-HhHH-----HHHHHHHHHHHHHHHHHHHhhc-------Chh-hh
Confidence 78888888888888888888888887755544421 1111 3445678899999999988886 444 56
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
.+...++-++.+++.+++++..++++...+-+. ..+...-|+|++-.++++.|...+..|+.+....+.-+.-+
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~------~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC------PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 778888888999999999999999887744332 56778889999999999999999999999986644444444
Q ss_pred HHHHHHHHHHHH-cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 002424 788 SATLTLAELWLS-FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 866 (924)
Q Consensus 788 ~al~~La~l~~~-lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~ 866 (924)
.-+.+-|.+..+ -++ +.+|..+++.++.. ..+- -.|+.+||.+.+. +|..++|+++++++..+++
T Consensus 503 ~plV~Ka~l~~qwk~d--~~~a~~Ll~KA~e~----Dpkc--e~A~~tlaq~~lQ------~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 503 APLVHKALLVLQWKED--INQAENLLRKAIEL----DPKC--EQAYETLAQFELQ------RGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhhhhhhHhhhchhhh--HHHHHHHHHHHHcc----CchH--HHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHH
Confidence 444444444433 133 58899998888655 3322 2467799999998 8999999999999998886
Q ss_pred hh
Q 002424 867 VL 868 (924)
Q Consensus 867 ~l 868 (924)
..
T Consensus 569 t~ 570 (606)
T KOG0547|consen 569 TE 570 (606)
T ss_pred hH
Confidence 43
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.4e-05 Score=92.48 Aligned_cols=133 Identities=15% Similarity=0.052 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++.+||.+...+|+|+||..+++.+.+..|.....++ . .+ .....++++++|...+++++...+ |
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~---~--~a-~~L~~~~~~eeA~~~~~~~l~~~p-----~-- 152 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFI---L--ML-RGVKRQQGIEAGRAEIELYFSGGS-----S-- 152 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHH---H--HH-HHHHHhccHHHHHHHHHHHhhcCC-----C--
Confidence 556677777777777777777777777776663222111 1 11 455567777777777777776422 2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
.+.+++.+|.++...|+|++|.+.+++++.. ......++..+|.++...|+.++|...+++|++..
T Consensus 153 -~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~------~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 153 -SAREILLEAKSWDEIGQSEQADACFERLSRQ------HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred -CHHHHHHHHHHHHHhcchHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 5666777777777777777777777777651 11335667777777777777777777777777665
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00072 Score=78.51 Aligned_cols=97 Identities=13% Similarity=0.144 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 002424 787 ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 866 (924)
Q Consensus 787 A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~ 866 (924)
..+...++..+...|+. ++|.+.+++++...-.. ...+.. .......+. .++...++..++++++.
T Consensus 263 ~~l~~~~a~~l~~~g~~--~~A~~~l~~~l~~~pd~---~~~~~~-~l~~~~~l~------~~~~~~~~~~~e~~lk~-- 328 (409)
T TIGR00540 263 IALKIALAEHLIDCDDH--DSAQEIIFDGLKKLGDD---RAISLP-LCLPIPRLK------PEDNEKLEKLIEKQAKN-- 328 (409)
T ss_pred HHHHHHHHHHHHHCCCh--HHHHHHHHHHHhhCCCc---ccchhH-HHHHhhhcC------CCChHHHHHHHHHHHHh--
Confidence 45566688888889998 99999999998753322 111101 111112222 45666777777777642
Q ss_pred hhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002424 867 VLEDHELAAEAFYLIAIVFDKLGRLAEREEAAA 899 (924)
Q Consensus 867 ~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~ 899 (924)
-.+-.. +..+..+|.++...|+.+++.++..
T Consensus 329 -~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 329 -VDDKPK-CCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred -CCCChh-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 233332 6788899999999999998877655
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.5e-05 Score=72.87 Aligned_cols=124 Identities=23% Similarity=0.172 Sum_probs=98.0
Q ss_pred HHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHH
Q 002424 636 AVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHAR 715 (924)
Q Consensus 636 a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ 715 (924)
...|++..+...++.....++........ .+.++ ..++..|++++|...++.+..-. .|+.....+.++++.
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A--~l~lA-~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALA--ALQLA-KAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLAR 93 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHH--HHHHH-HHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHH
Confidence 35788888888888777766644322212 22222 67889999999999999998832 377788899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHH
Q 002424 716 TLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 716 ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL 774 (924)
+++..|+|++|+..++.. .+..+...+...+|.|+.+.|+.+.|+..+.+||
T Consensus 94 ~~~~~~~~d~Al~~L~~~-------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999652 4455677789999999999999999999998875
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00012 Score=82.08 Aligned_cols=198 Identities=12% Similarity=0.001 Sum_probs=158.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
.-+-.+++...|...+++++.|-+ . ...++.++|.=++.+.+...|++.++.++++|.+. .|++..
T Consensus 338 NYYSlr~eHEKAv~YFkRALkLNp-------~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D------yRAWYG 403 (559)
T KOG1155|consen 338 NYYSLRSEHEKAVMYFKRALKLNP-------K-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD------YRAWYG 403 (559)
T ss_pred hHHHHHHhHHHHHHHHHHHHhcCc-------c-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh------HHHHhh
Confidence 345578899999999999999733 2 56889999999999999999999999999877644 789999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|+.|.-.+.+.=|+-++++|+.+- -+++ +.+..||+++..+++. ++|..++.+++. .||. .+.++
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~k--PnDs----Rlw~aLG~CY~kl~~~--~eAiKCykrai~----~~dt--e~~~l 469 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALELK--PNDS----RLWVALGECYEKLNRL--EEAIKCYKRAIL----LGDT--EGSAL 469 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhcC--CCch----HHHHHHHHHHHHhccH--HHHHHHHHHHHh----cccc--chHHH
Confidence 9999999999999999999998762 2332 5677899999999999 999999998854 4553 66789
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHEL-AAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~-~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
.-||+.|-. .++.++|..++++-++.....+-... .-.+..-||.-+...++.+++..++......
T Consensus 470 ~~LakLye~------l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 470 VRLAKLYEE------LKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHH------HHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 999999999 89999999999999986643332222 2333444888888888888776655544433
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.01 Score=76.18 Aligned_cols=204 Identities=12% Similarity=0.011 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++..+...++..|++++|.++++.+.+.-. ..+...|..- ...+...|++++|..++..+... .+ .|.
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi-~p~~~tynsL----I~ay~k~G~~deAl~lf~eM~~~--Gv---~PD 648 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNI-KGTPEVYTIA----VNSCSQKGDWDFALSIYDDMKKK--GV---KPD 648 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCChHHHHHH----HHHHHhcCCHHHHHHHHHHHHHc--CC---CCC
Confidence 46778888888899999999999998776421 1122222211 15667889999999999988762 22 222
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
..+...++..+...|++++|.+.++++... | ......+...+...|.+.|+.+.|+..+.+.... |...
T Consensus 649 --~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----G-~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~----g~~P 717 (1060)
T PLN03218 649 --EVFFSALVDVAGHAGDLDKAFEILQDARKQ----G-IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI----KLRP 717 (1060)
T ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC
Confidence 345667788888999999999999887652 2 2223446677778888999999998888765332 2211
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
-..+...|...+...|.. ++|.+++++... .|-. --...|..+-.++.. .|+.+.|...+++..+
T Consensus 718 -dvvtyN~LI~gy~k~G~~--eeAlelf~eM~~----~Gi~-Pd~~Ty~sLL~a~~k------~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 718 -TVSTMNALITALCEGNQL--PKALEVLSEMKR----LGLC-PNTITYSILLVASER------KDDADVGLDLLSQAKE 782 (1060)
T ss_pred -CHHHHHHHHHHHHHCCCH--HHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHH
Confidence 123466677888888987 999999887642 2211 122344445455555 6777788877777654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.001 Score=71.90 Aligned_cols=222 Identities=18% Similarity=0.107 Sum_probs=165.8
Q ss_pred cCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHH
Q 002424 639 KGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL 718 (924)
Q Consensus 639 G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~ 718 (924)
-..+.|.+.|-+..+.=+ ..--..+.+. ...+.+|+.+.|..+.+.+..- +.+. .+.+..++..+|.=++
T Consensus 49 ~Q~dKAvdlF~e~l~~d~---~t~e~~ltLG---nLfRsRGEvDRAIRiHQ~L~~s-pdlT---~~qr~lAl~qL~~Dym 118 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDP---ETFEAHLTLG---NLFRSRGEVDRAIRIHQTLLES-PDLT---FEQRLLALQQLGRDYM 118 (389)
T ss_pred cCcchHHHHHHHHHhcCc---hhhHHHHHHH---HHHHhcchHHHHHHHHHHHhcC-CCCc---hHHHHHHHHHHHHHHH
Confidence 445677777776664211 0011233333 5678999999999999988772 3222 3457889999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 002424 719 AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWL 798 (924)
Q Consensus 719 ~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~ 798 (924)
+.|=++.|.+.+..+... ....-.++..+-.||.+..+-++|+..+.+-..+- .-......|.-.+.||....
T Consensus 119 ~aGl~DRAE~~f~~L~de------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~-~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDE------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG-GQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HhhhhhHHHHHHHHHhcc------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC-CccchhHHHHHHHHHHHHHh
Confidence 999999999999977542 33345588889999999999999999887665554 23445566777777887665
Q ss_pred HcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q 002424 799 SFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAF 878 (924)
Q Consensus 799 ~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl 878 (924)
.-.+ +++|+.++..++..--. -.+|-..+|++.++ .|++++|++.++..++ .+|.-..+|+
T Consensus 192 ~~~~--~d~A~~~l~kAlqa~~~------cvRAsi~lG~v~~~------~g~y~~AV~~~e~v~e-----Qn~~yl~evl 252 (389)
T COG2956 192 ASSD--VDRARELLKKALQADKK------CVRASIILGRVELA------KGDYQKAVEALERVLE-----QNPEYLSEVL 252 (389)
T ss_pred hhhh--HHHHHHHHHHHHhhCcc------ceehhhhhhHHHHh------ccchHHHHHHHHHHHH-----hChHHHHHHH
Confidence 4444 49999999998765432 35677899999999 8999999999998876 4788889999
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 002424 879 YLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 879 ~~lA~l~~~lGd~~~r~~ 896 (924)
-.|...|+.+|++++...
T Consensus 253 ~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 253 EMLYECYAQLGKPAEGLN 270 (389)
T ss_pred HHHHHHHHHhCCHHHHHH
Confidence 999999999999987443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.3e-05 Score=84.69 Aligned_cols=196 Identities=18% Similarity=0.063 Sum_probs=78.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHH
Q 002424 629 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 708 (924)
Q Consensus 629 ~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~ 708 (924)
.+++.. ...|+|++|..+++.+.+.++ +...+...+ ..+...|++.++...++++... .. ......
T Consensus 82 ~~l~~l-~~~~~~~~A~~~~~~~~~~~~---~~~~l~~~l----~~~~~~~~~~~~~~~l~~~~~~-~~-----~~~~~~ 147 (280)
T PF13429_consen 82 ERLIQL-LQDGDPEEALKLAEKAYERDG---DPRYLLSAL----QLYYRLGDYDEAEELLEKLEEL-PA-----APDSAR 147 (280)
T ss_dssp --------------------------------------------H-HHHTT-HHHHHHHHHHHHH--T--------T-HH
T ss_pred cccccc-ccccccccccccccccccccc---ccchhhHHH----HHHHHHhHHHHHHHHHHHHHhc-cC-----CCCCHH
Confidence 344444 466777777777665544332 222222111 3456677777777777776542 11 112456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 788 (924)
.+...|.++...|++++|++.+++++.... ....++..++.++...|++.++...+........ .++ .
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P------~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~--~~~----~ 215 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALELDP------DDPDARNALAWLLIDMGDYDEAREALKRLLKAAP--DDP----D 215 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH-T------T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H--TSC----C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc--CHH----H
Confidence 667777777777777777777777776422 1234555666667777777765555554444331 111 1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 789 ATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 789 al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
....+|.++..+|++ ++|+..+++++..- -+| ..++..+|.++.. .|+.++|....++|+..
T Consensus 216 ~~~~la~~~~~lg~~--~~Al~~~~~~~~~~--p~d----~~~~~~~a~~l~~------~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 216 LWDALAAAYLQLGRY--EEALEYLEKALKLN--PDD----PLWLLAYADALEQ------AGRKDEALRLRRQALRL 277 (280)
T ss_dssp HCHHHHHHHHHHT-H--HHHHHHHHHHHHHS--TT-----HHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHhcccccc--cccccccccccccc--ccc----ccccccccccccc------ccccccccccccccccc
Confidence 233466667777777 77777777765421 122 2345566666776 67777777777776553
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.5e-05 Score=67.12 Aligned_cols=74 Identities=16% Similarity=0.101 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchh-HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE-NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~-~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
.+.+..++|.++...|+|++|++.+++++..++..|+... .+.++..+|.++...|++++|+.++.+|++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 5678899999999999999999999999999888887765 5999999999999999999999999999999863
|
... |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00082 Score=77.77 Aligned_cols=234 Identities=15% Similarity=0.103 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+.....-|......|+|+.|.+.+..+.+. .+.. .+..-+....+..+|+++.|.+++.++... +|
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~----~~~p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-------~~ 149 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADH----AEQP--VVNYLLAAEAAQQRGDEARANQHLERAAEL-------AD 149 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----ccch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CC
Confidence 3444456677777789999999777754332 2211 111111125668999999999999999774 33
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH-------
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF------- 776 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l------- 776 (924)
+.........+++....|++++|++.++++.+. ......++..++.+|.+.|+.++|+..+.+....
T Consensus 150 ~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 150 NDQLPVEITRVRIQLARNENHAARHGVDKLLEV------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 334445556699999999999999999988763 2333678888999999999999998554332210
Q ss_pred ------------HH---Hh-CCc-------------HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHH
Q 002424 777 ------------CQ---LL-NLD-------------LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLEL 827 (924)
Q Consensus 777 ------------a~---~~-g~~-------------~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~ 827 (924)
.. .. +.. .....+...+|..+...|+. ++|...+++++. ...+.
T Consensus 224 ~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~--~~A~~~L~~~l~---~~~~~-- 296 (398)
T PRK10747 224 RAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDH--DTAQQIILDGLK---RQYDE-- 296 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHh---cCCCH--
Confidence 00 00 000 01223556678888889998 999999988876 23333
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002424 828 RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAA 899 (924)
Q Consensus 828 ~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~ 899 (924)
.....++ ++. .+++.+++..+++.++.+ ..-.+.+..+|+++...|+.+.+.++..
T Consensus 297 --~l~~l~~--~l~------~~~~~~al~~~e~~lk~~------P~~~~l~l~lgrl~~~~~~~~~A~~~le 352 (398)
T PRK10747 297 --RLVLLIP--RLK------TNNPEQLEKVLRQQIKQH------GDTPLLWSTLGQLLMKHGEWQEASLAFR 352 (398)
T ss_pred --HHHHHHh--hcc------CCChHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1112222 233 467777777777665432 2344577889999999999888777443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0012 Score=79.66 Aligned_cols=286 Identities=15% Similarity=0.068 Sum_probs=183.7
Q ss_pred HHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH--HHHh-h
Q 002424 594 AWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL--LKLQ-L 670 (924)
Q Consensus 594 ~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~--l~l~-l 670 (924)
.|..+-.+.++.+...+ +..-+. .....-+...--|..+..+++|+||-.++.++....+..+...... ...+ +
T Consensus 387 ~~~L~~~~~lsll~~~~--~~lP~~-~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL 463 (894)
T COG2909 387 EWQLFNGSELSLLLAWL--KALPAE-LLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQAL 463 (894)
T ss_pred hhhhhcccchHHHHHHH--HhCCHH-HHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHH
Confidence 67777666676665421 100000 0000012223346667789999999999999887665533332111 1111 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHH
Q 002424 671 LHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVL 750 (924)
Q Consensus 671 ~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al 750 (924)
....++.+|+.+.|.++.+.++..-+.. -......+....+.+...+|++++|+.+..++.+.++..+..+....+.
T Consensus 464 ~a~val~~~~~e~a~~lar~al~~L~~~---~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~ 540 (894)
T COG2909 464 RAQVALNRGDPEEAEDLARLALVQLPEA---AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSL 540 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcccc---cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 2268899999999999999888743322 2344778888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh-CCHH
Q 002424 751 LLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL---LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH-GGLE 826 (924)
Q Consensus 751 ~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~---~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~-gd~~ 826 (924)
+..++|....|+...|...-...+.-.+..+... ....++..+...|..+ +.+..-....+..-... ....
T Consensus 541 ~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~-----~~~~~ear~~~~~~~~~~~~~~ 615 (894)
T COG2909 541 LQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRL-----DLAEAEARLGIEVGSVYTPQPL 615 (894)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH-----hhhhHHhhhcchhhhhcccchh
Confidence 9999999999955555443333332222111111 1223333333334321 22222222222222111 2223
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 827 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL-EDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 827 ~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l-~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
+..-++..||++... .|++++|...+++-.....+- ......+.+..-+..+-...||.+++..
T Consensus 616 ~~~~~~~~LA~l~~~------~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~ 680 (894)
T COG2909 616 LSRLALSMLAELEFL------RGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAE 680 (894)
T ss_pred HHHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHH
Confidence 333344799999999 999999999999998888765 5677777777778888888899888654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00025 Score=69.91 Aligned_cols=133 Identities=22% Similarity=0.101 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 788 (924)
..+..+......|+...+.+.++.+.. ..+.......+.+.+|.++...|++++|...+..++.-. .++.+...
T Consensus 13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~ 86 (145)
T PF09976_consen 13 ALYEQALQALQAGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPL 86 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHH
Confidence 334444444578888888887777665 345555667889999999999999999999999887743 67788899
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 002424 789 ATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQAS 862 (924)
Q Consensus 789 al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~ 862 (924)
+.++||.++...|.. ++|+..|+.+ .+....+.+..++|.++++ .|+.++|+..+++|+
T Consensus 87 a~l~LA~~~~~~~~~--d~Al~~L~~~-------~~~~~~~~~~~~~Gdi~~~------~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 87 ARLRLARILLQQGQY--DEALATLQQI-------PDEAFKALAAELLGDIYLA------QGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHcCCH--HHHHHHHHhc-------cCcchHHHHHHHHHHHHHH------CCCHHHHHHHHHHhC
Confidence 999999999999998 9999999662 2334577889999999999 999999999999884
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0013 Score=84.35 Aligned_cols=244 Identities=11% Similarity=0.058 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++..+...+...|++++|.++++++...-........ ..+.....+...|++++|.++++.+... .+ .
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v---TynaLI~ay~k~G~ldeA~elf~~M~e~--gi-----~ 611 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI---TVGALMKACANAGQVDRAKEVYQMIHEY--NI-----K 611 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHc--CC-----C
Confidence 456778888888888888888888877653111211111 1111115667888888888888887662 11 1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
....++..++..+.+.|++++|++.++++... |... ...+...+...+.+.|+++.|+..+.+... .|...
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~----Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k----~G~~p 682 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK----GVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARK----QGIKL 682 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCC
Confidence 13456777788888888888888888877652 3222 244566667778888888888888776543 23222
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
. ..+...|...+...|.. ++|.+++++.... |-. --...|..|...+.. .|+.++|++++++...
T Consensus 683 d-~~tynsLI~ay~k~G~~--eeA~~lf~eM~~~----g~~-PdvvtyN~LI~gy~k------~G~~eeAlelf~eM~~- 747 (1060)
T PLN03218 683 G-TVSYSSLMGACSNAKNW--KKALELYEDIKSI----KLR-PTVSTMNALITALCE------GNQLPKALEVLSEMKR- 747 (1060)
T ss_pred C-HHHHHHHHHHHHhCCCH--HHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHH-
Confidence 1 23456677788888887 8888888775332 211 123457777777777 7888888887776532
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 002424 865 LQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVL 906 (924)
Q Consensus 865 f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~ 906 (924)
.+... -..++..+-..+...|+.+++.+......+.|.
T Consensus 748 ---~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 748 ---LGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred ---cCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 12111 233555666778888888776665555544443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.2e-05 Score=64.48 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHH-HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLEL-RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~-~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
..+.++..+|.++..+|+. ++|+..+++++......|+... .+.++..+|.|+.. .|++++|+.++++|++
T Consensus 3 ~~a~~~~~la~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~------~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRY--DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR------LGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH------TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHh
Confidence 3567788999999999998 9999999999999888997764 59999999999999 9999999999999999
Q ss_pred HHHh
Q 002424 864 ELQV 867 (924)
Q Consensus 864 ~f~~ 867 (924)
++++
T Consensus 75 i~~k 78 (78)
T PF13424_consen 75 IFEK 78 (78)
T ss_dssp HHHH
T ss_pred hhcC
Confidence 9874
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00047 Score=76.47 Aligned_cols=239 Identities=16% Similarity=0.026 Sum_probs=160.0
Q ss_pred HHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC------cchH
Q 002424 633 QHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD------MDLK 706 (924)
Q Consensus 633 ~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D------~~~~ 706 (924)
.++.-.|+|++|...--..+..-+ .+ .-.+.+.. ......++.+.|..++.+.+.+.+... + ..-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~---~n-~~al~vrg--~~~yy~~~~~ka~~hf~qal~ldpdh~--~sk~~~~~~k~ 248 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDA---TN-AEALYVRG--LCLYYNDNADKAINHFQQALRLDPDHQ--KSKSASMMPKK 248 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhccc---ch-hHHHHhcc--cccccccchHHHHHHHhhhhccChhhh--hHHhHhhhHHH
Confidence 345567777777655443332211 11 11111111 345578889999999999888643221 1 0113
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 786 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 786 (924)
.+.+-..|.-....|+|..|.+.+.++|.+-. ......+.+.+++|.+..+.|+...|+..+..|+.|=. ..
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP--~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~------sy 320 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDP--SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS------SY 320 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCc--cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH------HH
Confidence 56677888889999999999999999998422 23345688999999999999999999999999988743 33
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 002424 787 ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 866 (924)
Q Consensus 787 A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~ 866 (924)
..+++.-|.+++.++.. ++|++-++.++..-.....+..-..+-..|=+.-+. ++|.
T Consensus 321 ikall~ra~c~l~le~~--e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRk---------------------d~yk 377 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKW--EEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRK---------------------DWYK 377 (486)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhh---------------------hHHH
Confidence 45667778888889988 999999999988765544444333333322222111 2333
Q ss_pred hhcC-----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhc
Q 002424 867 VLED-----HELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALEN 910 (924)
Q Consensus 867 ~l~~-----~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~~~~~ 910 (924)
-++. ....+.++.++|.+||..-..-.+.++-+.|+..|.++.-
T Consensus 378 ilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~i 426 (486)
T KOG0550|consen 378 ILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTI 426 (486)
T ss_pred HhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHH
Confidence 3333 3345778888999998876666677888888888887653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00027 Score=81.06 Aligned_cols=205 Identities=18% Similarity=0.086 Sum_probs=152.8
Q ss_pred HHHHHhhCchHHHHhHHHHHHhhcCCCC-ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhh
Q 002424 592 ATAWEAYGSAPLTRVNTLIYATCFSDGS-SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQL 670 (924)
Q Consensus 592 a~~W~~~G~~~ls~~~~~~~~~~~~~~~-~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l 670 (924)
+.-|-..|+=.+.--...-+.+++++.. -..-.+.+....|-.++..|+-+.|.+.+..|-+.|++-..+. --+.
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~-LYlg--- 387 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS-LYLG--- 387 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH-HHHH---
Confidence 3445555555444332233455666532 1223456677788889999999999999999999988543322 1122
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccch--hHHH
Q 002424 671 LHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV--ENAS 748 (924)
Q Consensus 671 ~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~--~~a~ 748 (924)
..+.+.+++..|..++.++.++++. || .+..-+|-+....+.|.+|..+++.++.-....+..- |+ -
T Consensus 388 --mey~~t~n~kLAe~Ff~~A~ai~P~----Dp----lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~-p 456 (611)
T KOG1173|consen 388 --MEYMRTNNLKLAEKFFKQALAIAPS----DP----LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE-P 456 (611)
T ss_pred --HHHHHhccHHHHHHHHHHHHhcCCC----cc----hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchh-H
Confidence 5667899999999999999998663 64 4566688888899999999999999986544433322 22 2
Q ss_pred HHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 749 VLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 749 al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
.+.++|.++.+.+.+..|+..+++||.++.+. +.+...+|-++..+|.. +.|.+++..+|.+-
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~------~~~~asig~iy~llgnl--d~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD------ASTHASIGYIYHLLGNL--DKAIDHFHKALALK 519 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc------hhHHHHHHHHHHHhcCh--HHHHHHHHHHHhcC
Confidence 68899999999999999999999999998532 45667799999999999 99999999998763
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0018 Score=76.79 Aligned_cols=252 Identities=19% Similarity=0.088 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.+..+++..++.+++.++|.+..+++++.-+... ...|++-. ...-..+++.+|+.+...++.-+. |
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~-~~~whLLA----LvlSa~kr~~~Al~vvd~al~E~~-----~--- 545 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDS-AKAWHLLA----LVLSAQKRLKEALDVVDAALEEFG-----D--- 545 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc-HHHHHHHH----HHHhhhhhhHHHHHHHHHHHHHhh-----h---
Confidence 6788999999999999999999999887644222 22344221 344578999999999998887333 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---cccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK---FNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~---~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~ 782 (924)
-.......+.+-...||.++|+..+...++..+. ......+...+..++.++...+++..|.....++..+++.-+-
T Consensus 546 N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~ 625 (799)
T KOG4162|consen 546 NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK 625 (799)
T ss_pred hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh
Confidence 1222334455556689999999999999887763 2222336778889999999999999998888887777653222
Q ss_pred cH--------------------HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcC
Q 002424 783 DL--------------------LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSD 842 (924)
Q Consensus 783 ~~--------------------~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~ 842 (924)
.. ..-......+.+|...|.. ++|.-++.++--+. ..-+..|+..|+++..
T Consensus 626 ~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~--~~a~~CL~Ea~~~~------~l~~~~~~~~G~~~~~- 696 (799)
T KOG4162|consen 626 SAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGND--DEARSCLLEASKID------PLSASVYYLRGLLLEV- 696 (799)
T ss_pred hcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHhcc------hhhHHHHHHhhHHHHH-
Confidence 21 2233445688888889998 89988888775443 4666777777777777
Q ss_pred CCCCCCCChHHHHHHHHHHHH--------------HHHhhcCHHHH----------------HHHHHHHHHHHHhcCCHH
Q 002424 843 PSFSVSQNPEAVLDPLRQASE--------------ELQVLEDHELA----------------AEAFYLIAIVFDKLGRLA 892 (924)
Q Consensus 843 ~~~~~~g~~~~Al~~L~~A~~--------------~f~~l~~~~~~----------------~~vl~~lA~l~~~lGd~~ 892 (924)
.|...+|.+.+..|+. ++.+.|.+... .++.|.+|.++..+||..
T Consensus 697 -----~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 697 -----KGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred -----HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 6666666666665542 33444443322 357899999999999999
Q ss_pred HHHHHHHHHHHH
Q 002424 893 EREEAAALFKEY 904 (924)
Q Consensus 893 ~r~~aa~~f~~l 904 (924)
.+.+|-...-++
T Consensus 772 ~Aaecf~aa~qL 783 (799)
T KOG4162|consen 772 QAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHhh
Confidence 877776665555
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0003 Score=78.09 Aligned_cols=184 Identities=15% Similarity=0.132 Sum_probs=136.5
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAAN--QFSEAAAVAHSLFCMCYKFNLQVENASVLL 751 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G--~~~eAl~~l~~aL~~~~~~gd~~~~a~al~ 751 (924)
-++..|++..|.+++.-+..- |......+-.++..+..-+| ++..|..+...++. ..+..+.++.
T Consensus 428 ~~lk~~d~~~aieilkv~~~k-------dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln------~dryn~~a~~ 494 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKK-------DNKTASAAANNLCALRFLQGGKDFADAQQYADIALN------IDRYNAAALT 494 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhc-------cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc------ccccCHHHhh
Confidence 557889999998887765441 32223344444444444433 78888888877765 2345577889
Q ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHH
Q 002424 752 LLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARA 831 (924)
Q Consensus 752 ~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a 831 (924)
++|.+-...|++++|...+.+||. ++.--..|+.++|.+...+|.. ++|++++-..-.+.+ --+.+
T Consensus 495 nkgn~~f~ngd~dka~~~ykeal~------ndasc~ealfniglt~e~~~~l--deald~f~klh~il~------nn~ev 560 (840)
T KOG2003|consen 495 NKGNIAFANGDLDKAAEFYKEALN------NDASCTEALFNIGLTAEALGNL--DEALDCFLKLHAILL------NNAEV 560 (840)
T ss_pred cCCceeeecCcHHHHHHHHHHHHc------CchHHHHHHHHhcccHHHhcCH--HHHHHHHHHHHHHHH------hhHHH
Confidence 999999999999999999988874 3445568899999999999998 999998877655544 45778
Q ss_pred HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 832 FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 832 ~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
+.-+|..|-. .+++.+|+++|-+|.... .---.++.+||.+|...||...+=+
T Consensus 561 l~qianiye~------led~aqaie~~~q~~sli------p~dp~ilskl~dlydqegdksqafq 613 (840)
T KOG2003|consen 561 LVQIANIYEL------LEDPAQAIELLMQANSLI------PNDPAILSKLADLYDQEGDKSQAFQ 613 (840)
T ss_pred HHHHHHHHHH------hhCHHHHHHHHHHhcccC------CCCHHHHHHHHHHhhcccchhhhhh
Confidence 8888988888 889999999999886543 2233578899999999999887655
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0017 Score=71.94 Aligned_cols=231 Identities=13% Similarity=0.054 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
...+..+|.+++..|++++|.-.++.+.-.=|- .+ -.+-......-..|++..-..+...+.....
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy----~i--~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-------- 297 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD----NV--EAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-------- 297 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh----hh--hhHHHHHHHHHhccCHhhHHHHHHHHHhhhh--------
Confidence 355677889999999999999999876643221 00 0111111233467888888888887777411
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
..++-++-.+.++....+|+.|+.+.+.++.. ......+++++|.+....|+++.|.-.++.|..++ .
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La------p 365 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDS------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA------P 365 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc------h
Confidence 13344566677778888999999998888762 22346688889999999999999988888887776 1
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHH-HhhhcCCCCC-----------------
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEA-KCLLSDPSFS----------------- 846 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LA-r~~la~~~~~----------------- 846 (924)
.+-++...|-+.|++.|.. .+|..+-+.++...- .-|+++.++| .+++-++..+
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~--kEA~~~An~~~~~~~------~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y 437 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRF--KEANALANWTIRLFQ------NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY 437 (564)
T ss_pred hhHHHHHHHHHHHHhhchH--HHHHHHHHHHHHHhh------cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc
Confidence 2235566677777788876 888887777766543 3456666665 4444332111
Q ss_pred ------------CCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 847 ------------VSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 847 ------------~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
..|....++..|++++..|..+. ....||.++.+...+.++-+
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-------LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-------LHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-------HHHHHHHHHHHhhhHHHHHH
Confidence 05666778888888888775433 34456666777766666554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00044 Score=74.42 Aligned_cols=197 Identities=17% Similarity=0.087 Sum_probs=144.8
Q ss_pred HHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 002424 664 LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ 743 (924)
Q Consensus 664 ~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~ 743 (924)
|-.+-|++ ..+++.|-+.+|+..+++.+.-++ ..+....++.++.+..+...|+..+.+.++ ..
T Consensus 223 wwWk~Q~g-kCylrLgm~r~AekqlqssL~q~~---------~~dTfllLskvY~ridQP~~AL~~~~~gld------~f 286 (478)
T KOG1129|consen 223 WWWKQQMG-KCYLRLGMPRRAEKQLQSSLTQFP---------HPDTFLLLSKVYQRIDQPERALLVIGEGLD------SF 286 (478)
T ss_pred HHHHHHHH-HHHHHhcChhhhHHHHHHHhhcCC---------chhHHHHHHHHHHHhccHHHHHHHHhhhhh------cC
Confidence 44443444 788999999999999998887433 345677788899999999999999988765 23
Q ss_pred hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhC
Q 002424 744 VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG 823 (924)
Q Consensus 744 ~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~g 823 (924)
......++..|.||...++.+.|+.++.+++.+- ....++.| -+|.-|.--|.| +-|+..++++|.+-...+
T Consensus 287 P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~----~~nvEaiA--cia~~yfY~~~P--E~AlryYRRiLqmG~~sp 358 (478)
T KOG1129|consen 287 PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH----PINVEAIA--CIAVGYFYDNNP--EMALRYYRRILQMGAQSP 358 (478)
T ss_pred CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC----Cccceeee--eeeeccccCCCh--HHHHHHHHHHHHhcCCCh
Confidence 4556678888999999999999999998777652 22233332 244444446677 889999998877655443
Q ss_pred CHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002424 824 GLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAA 899 (924)
Q Consensus 824 d~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~ 899 (924)
..+..+|-|.+. .+.++-++..+++|+... ..+...++|.|.++.+....||...+.+|..
T Consensus 359 ------eLf~NigLCC~y------aqQ~D~~L~sf~RAlsta---t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfr 419 (478)
T KOG1129|consen 359 ------ELFCNIGLCCLY------AQQIDLVLPSFQRALSTA---TQPGQAADVWYNLGFVAVTIGDFNLAKRCFR 419 (478)
T ss_pred ------HHHhhHHHHHHh------hcchhhhHHHHHHHHhhc---cCcchhhhhhhccceeEEeccchHHHHHHHH
Confidence 467788888888 777888888888887754 4566777888888888888888877666543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.048 Score=69.61 Aligned_cols=156 Identities=15% Similarity=0.064 Sum_probs=87.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHH
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 707 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a 707 (924)
+..+-..++..|++++|.++++.+.+.-.. .+.. ..+.....+...|++++|.++++++.. .| .
T Consensus 392 ~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~-~~~~----~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~d----~ 455 (857)
T PLN03077 392 IASVLSACACLGDLDVGVKLHELAERKGLI-SYVV----VANALIEMYSKCKCIDKALEVFHNIPE-------KD----V 455 (857)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhCCC-cchH----HHHHHHHHHHHcCCHHHHHHHHHhCCC-------CC----e
Confidence 344444555556666666665555432110 0100 011111566678888888888776543 13 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHH----------------------------------HHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENAS----------------------------------VLLLL 753 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~----------------------------------al~~l 753 (924)
.++..++..+...|++++|++.+++++.. ....... +...+
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-----~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLT-----LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHhC-----CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 34666777778888888888888887641 1111100 01122
Q ss_pred HHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 002424 754 AEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQAL 816 (924)
Q Consensus 754 a~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aL 816 (924)
-..|.++|+.+.|+..+.+. .+ -..+...|...+...|.. ++|++++++..
T Consensus 531 i~~y~k~G~~~~A~~~f~~~--------~~--d~~s~n~lI~~~~~~G~~--~~A~~lf~~M~ 581 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH--------EK--DVVSWNILLTGYVAHGKG--SMAVELFNRMV 581 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc--------CC--ChhhHHHHHHHHHHcCCH--HHHHHHHHHHH
Confidence 35566777777776666543 11 123455566777778887 88888888754
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.08 Score=64.81 Aligned_cols=279 Identities=13% Similarity=0.016 Sum_probs=186.4
Q ss_pred CCCChHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhh
Q 002424 617 DGSSLSDAALAHVKLIQHLA-VFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMA 695 (924)
Q Consensus 617 ~~~~~d~~~~a~~~La~~~a-~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~ 695 (924)
..-+++-+++++.++|.++. ...++++|..+|+++..+-...+......-+..+....+...+... |...+++....+
T Consensus 51 ~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~ 129 (608)
T PF10345_consen 51 FKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS 129 (608)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence 34467899999999999998 5678999999999887765442222111111112224444555555 999999988866
Q ss_pred hccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHH
Q 002424 696 SSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLS 775 (924)
Q Consensus 696 ~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~ 775 (924)
...+ .........+..+.+.+..+|+..|++.++.....+...||+...+-+.+..|.++...|.+..+++.+.++..
T Consensus 130 ~~~~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 130 ETYG--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred hccC--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 5433 22223344444455555568999999999999999988899999999999999999999999999999999998
Q ss_pred HHHHh----CCcHHHHHHHHHHHHHHH--HcCCChHHHHHHHHHHHHhHHHhhCCH------------------------
Q 002424 776 FCQLL----NLDLLKASATLTLAELWL--SFGPNHAKMASNLIQQALPLILGHGGL------------------------ 825 (924)
Q Consensus 776 la~~~----g~~~~~A~al~~La~l~~--~lG~~~~~~Al~lLe~aLp~vl~~gd~------------------------ 825 (924)
.++.. ......-.++..+-++.+ ..|.. ..+...+.+.-..+.+..+.
T Consensus 208 ~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~--~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~ 285 (608)
T PF10345_consen 208 QARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDV--KNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSG 285 (608)
T ss_pred HHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCC
Confidence 88866 012223334444444444 45554 45555544443333332221
Q ss_pred ------------HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhc-------------C-------HHH
Q 002424 826 ------------ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLE-------------D-------HEL 873 (924)
Q Consensus 826 ------------~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~-------------~-------~~~ 873 (924)
...+-+|+.-|-+.+. .+..++|..++++|+...++.. . ...
T Consensus 286 ~~~~~f~wl~~~~l~~L~y~lS~l~~~~------~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l 359 (608)
T PF10345_consen 286 GTPLVFSWLPKEELYALVYFLSGLHNLY------KGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYL 359 (608)
T ss_pred CceeEEeecCHHHHHHHHHHHHHHHHhh------ccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHH
Confidence 2334445544544444 4445589999999998888766 0 123
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 002424 874 AAEAFYLIAIVFDKLGRLAEREEAAALFKEYVL 906 (924)
Q Consensus 874 ~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~ 906 (924)
.+-++..++......|+...+.......++...
T Consensus 360 ~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~ 392 (608)
T PF10345_consen 360 QCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQ 392 (608)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHh
Confidence 566777888888899999887777666665544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0053 Score=63.71 Aligned_cols=214 Identities=13% Similarity=0.062 Sum_probs=143.0
Q ss_pred cCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHH
Q 002424 639 KGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL 718 (924)
Q Consensus 639 G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~ 718 (924)
+.|+||.+++.+|...|. ..-+|..|-..+.++..+.-..+..| -+...+-.+.-..
T Consensus 28 ~k~eeAadl~~~Aan~yk--------------------laK~w~~AG~aflkaA~~h~k~~skh---Daat~YveA~~cy 84 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYK--------------------LAKNWSAAGDAFLKAADLHLKAGSKH---DAATTYVEAANCY 84 (288)
T ss_pred cchHHHHHHHHHHHHHHH--------------------HHHhHHHHHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHh
Confidence 468999999888776654 23455566666666655544444222 2333444555557
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc-CChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Q 002424 719 AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS-GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELW 797 (924)
Q Consensus 719 ~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~-G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~ 797 (924)
+.++.++|..+++.+++++-..|.-...++-.+.+|++|-.- .+++.|+.++.+|.+....-......-..++-.|..-
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 788999999999999999988888888888999999999654 8889999999999888765555555556667677776
Q ss_pred HHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHH-HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcC---HHH
Q 002424 798 LSFGPNHAKMASNLIQQALPLILGHGGLELRARA-FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLED---HEL 873 (924)
Q Consensus 798 ~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a-~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~---~~~ 873 (924)
..+|.. .+|+++++++....+.+.-.-=-+.- ++.-|-||+. ..+.-.+. +|++-|..+.- -.+
T Consensus 165 a~leqY--~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~------~~D~v~a~----~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 165 AQLEQY--SKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC------KADEVNAQ----RALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHH--HHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh------cccHHHHH----HHHHHHHhcCCcccccH
Confidence 778887 99999999998776654433223333 4456688888 44443332 33333333221 245
Q ss_pred HHHHHHHHHHHHHh
Q 002424 874 AAEAFYLIAIVFDK 887 (924)
Q Consensus 874 ~~~vl~~lA~l~~~ 887 (924)
++.-+-.|...+..
T Consensus 233 Eckflk~L~~aieE 246 (288)
T KOG1586|consen 233 ECKFLKDLLDAIEE 246 (288)
T ss_pred HHHHHHHHHHHHhh
Confidence 55555556555543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00053 Score=67.59 Aligned_cols=91 Identities=12% Similarity=0.025 Sum_probs=72.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
.....+|++++|...+.+++.+ ||. ...++..+|.++...|++++|+..+++++.. ......++..
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~-------~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l------~p~~~~a~~~ 97 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMA-------QPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML------DASHPEPVYQ 97 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHc-------CCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCCCcHHHHH
Confidence 4667888888888888888775 222 4677888888888899999999988888763 2234677888
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+|.++...|++++|+..+.+|+.+.
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888899999888888888775
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00053 Score=69.21 Aligned_cols=135 Identities=12% Similarity=-0.041 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCC
Q 002424 723 FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGP 802 (924)
Q Consensus 723 ~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~ 802 (924)
|..+...+...+. .......+.++..+|.++...|+++.|+..+.+|+.+.. .+...+.++..+|.++...|.
T Consensus 15 ~~~~~~~l~~~~~----~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~ 87 (168)
T CHL00033 15 FTIVADILLRILP----TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGE 87 (168)
T ss_pred cccchhhhhHhcc----CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCC
Confidence 4445555544332 133344577888889999999999999999988888742 333455678889999999998
Q ss_pred ChHHHHHHHHHHHHhHHHhhC-CHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhh--cCHH
Q 002424 803 NHAKMASNLIQQALPLILGHG-GLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL--EDHE 872 (924)
Q Consensus 803 ~~~~~Al~lLe~aLp~vl~~g-d~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l--~~~~ 872 (924)
. ++|+..++.++..-...+ .....+.++..+|+.... .|++..|+..+++|+..|++. .+|.
T Consensus 88 ~--~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~------~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 88 H--TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIE------QGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred H--HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHH------cccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 8 999999998886533221 233455666666666667 899999999999999998876 4553
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00032 Score=69.11 Aligned_cols=110 Identities=13% Similarity=0.039 Sum_probs=90.4
Q ss_pred HHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChh
Q 002424 685 QKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAV 764 (924)
Q Consensus 685 ~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~ 764 (924)
+.++++++.+ ||.. ....|..+...|++++|++.++.++.. ......++..+|.++...|+++
T Consensus 13 ~~~~~~al~~-------~p~~----~~~~g~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~ 75 (144)
T PRK15359 13 EDILKQLLSV-------DPET----VYASGYASWQEGDYSRAVIDFSWLVMA------QPWSWRAHIALAGTWMMLKEYT 75 (144)
T ss_pred HHHHHHHHHc-------CHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHhhHH
Confidence 3557777665 4432 456799999999999999999998763 3445788999999999999999
Q ss_pred hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 765 LGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 765 ~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
.|+..+.+|+.+.- .-+.++..+|.++..+|+. ++|+..++.++...
T Consensus 76 ~A~~~y~~Al~l~p------~~~~a~~~lg~~l~~~g~~--~eAi~~~~~Al~~~ 122 (144)
T PRK15359 76 TAINFYGHALMLDA------SHPEPVYQTGVCLKMMGEP--GLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHhcCC------CCcHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC
Confidence 99999999998742 3357788899999999999 99999999997754
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0083 Score=72.56 Aligned_cols=124 Identities=16% Similarity=0.105 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHH
Q 002424 750 LLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRA 829 (924)
Q Consensus 750 l~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A 829 (924)
.+.+|.+|++.++...++.++.. ...-..-....-+..+++++...|.+ ..|++++-.+ ..+..+..+
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~-----~~n~~~~d~~dL~~d~a~al~~~~~~--~~Al~~l~~i-----~~~~~~~~~ 449 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLV-----EDNVWVSDDVDLYLDLADALTNIGKY--KEALRLLSPI-----TNREGYQNA 449 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHH-----HhcCChhhhHHHHHHHHHHHHhcccH--HHHHHHHHHH-----hcCccccch
Confidence 55666666666666666555421 12212344455677799999999988 9999998776 355666778
Q ss_pred HHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 002424 830 RAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 830 ~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~a 897 (924)
-++..+|+|++. .|.+++|++++++++... ..--++...|+.++..+|+++++.++
T Consensus 450 ~vw~~~a~c~~~------l~e~e~A~e~y~kvl~~~------p~~~D~Ri~Lasl~~~~g~~EkalEt 505 (895)
T KOG2076|consen 450 FVWYKLARCYME------LGEYEEAIEFYEKVLILA------PDNLDARITLASLYQQLGNHEKALET 505 (895)
T ss_pred hhhHHHHHHHHH------HhhHHHHHHHHHHHHhcC------CCchhhhhhHHHHHHhcCCHHHHHHH
Confidence 899999999999 899999999999998754 23345677889999999999865543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.001 Score=75.22 Aligned_cols=174 Identities=16% Similarity=0.031 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++.+.|+.+...++|++|.+-++.+..+-|+.- +..+.+. -...+.++++++...++....-|+.
T Consensus 395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~---~~~iQl~---~a~Yr~~k~~~~m~~Fee~kkkFP~-------- 460 (606)
T KOG0547|consen 395 DVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA---YAYIQLC---CALYRQHKIAESMKTFEEAKKKFPN-------- 460 (606)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh---HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhCCC--------
Confidence 5789999999999999999999999887755322 2222222 3456778999999999999887774
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK-SGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~-~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
..++...-++++..+++|+.|.+.+..++++-.........+--+..+|.+..+ .++..+|..++.+|+++= .
T Consensus 461 ~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D------p 534 (606)
T KOG0547|consen 461 CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD------P 534 (606)
T ss_pred CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC------c
Confidence 458899999999999999999999999998755433333344445555544433 266777777777777652 2
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
--=.|...||.+.+++|.. ++|+++++.++-.++.
T Consensus 535 kce~A~~tlaq~~lQ~~~i--~eAielFEksa~lArt 569 (606)
T KOG0547|consen 535 KCEQAYETLAQFELQRGKI--DEAIELFEKSAQLART 569 (606)
T ss_pred hHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHh
Confidence 2235677899999999999 9999999999988774
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.32 Score=59.60 Aligned_cols=223 Identities=13% Similarity=-0.017 Sum_probs=155.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCC-CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHcccchhH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTG-VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFC-----MCYKFNLQVEN 746 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~-~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~-----~~~~~gd~~~~ 746 (924)
...+-+|+|..|...++.+.......+. ..........+..|.+....|+.+.|+..+....- ..+........
T Consensus 369 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ 448 (608)
T PF10345_consen 369 WCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELY 448 (608)
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHH
Confidence 4567899999999999988876543331 11234578889999999999999999999973321 11112222334
Q ss_pred HHHHHHHHHHHHhcCChhh----hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHhHH-H
Q 002424 747 ASVLLLLAEIHKKSGNAVL----GIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN-HAKMASNLIQQALPLI-L 820 (924)
Q Consensus 747 a~al~~la~i~~~~G~~~~----Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~-~~~~Al~lLe~aLp~v-l 820 (924)
+-+.++++.|+...+.... .-..+.+--..+..+.+.....-....++.+.. ..+ -..++...+.+.|-.. .
T Consensus 449 ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~ne~k~~l~~~L~~~~~ 526 (608)
T PF10345_consen 449 ILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNT--FEPFSSNEAKRHLQEALKMANN 526 (608)
T ss_pred HHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhh--CCccccHHHHHHHHHHHHHHHH
Confidence 5578888889987777654 333333222334444444433333332443332 222 1258999999999999 7
Q ss_pred hhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 002424 821 GHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL---EDHELAAEAFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 821 ~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l---~~~~~~~~vl~~lA~l~~~lGd~~~r~~a 897 (924)
..++....+.++..++-..+. ++..+.......|...+.+. ++..+.--.-..++..++..|+.++++..
T Consensus 527 ~~~n~~l~~~~L~lm~~~lf~-------~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~ 599 (608)
T PF10345_consen 527 KLGNSQLLAILLNLMGHRLFE-------GDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEA 599 (608)
T ss_pred hhccchHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 999999999999999966664 67777777777799999988 88888777888899999999999998887
Q ss_pred HHHHHHH
Q 002424 898 AALFKEY 904 (924)
Q Consensus 898 a~~f~~l 904 (924)
...+.++
T Consensus 600 ~~~~~~~ 606 (608)
T PF10345_consen 600 RQQLDRV 606 (608)
T ss_pred HHHHHHh
Confidence 7766654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0016 Score=70.31 Aligned_cols=225 Identities=14% Similarity=0.015 Sum_probs=157.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHH
Q 002424 629 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 708 (924)
Q Consensus 629 ~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~ 708 (924)
..+|.++.+.|-+.+|...|+.+++.|+- .+. ...+. ..+-+..+...|...+.+-+..++ + ...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dT-fllLs-----kvY~ridQP~~AL~~~~~gld~fP--~------~VT 291 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDT-FLLLS-----KVYQRIDQPERALLVIGEGLDSFP--F------DVT 291 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhH-HHHHH-----HHHHHhccHHHHHHHHhhhhhcCC--c------hhh
Confidence 67888889999999999999999988762 221 11222 677778888888888888777544 1 345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 788 (924)
.+...++++-++|++++|++++...+.. ...++.+.-..|.-|.-.|+|+-|+.++++-|.+-...+ +
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp------e 359 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKL------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSP------E 359 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhc------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCCh------H
Confidence 5677888899999999999999888763 223344444556667778888888888888877654322 2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhh
Q 002424 789 ATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL 868 (924)
Q Consensus 789 al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l 868 (924)
..+++|.+...-+.. +-++-.+++++..... ....|.+++.||-+... .|+..-|..+++-|+.
T Consensus 360 Lf~NigLCC~yaqQ~--D~~L~sf~RAlstat~---~~~aaDvWYNlg~vaV~------iGD~nlA~rcfrlaL~----- 423 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQI--DLVLPSFQRALSTATQ---PGQAADVWYNLGFVAVT------IGDFNLAKRCFRLALT----- 423 (478)
T ss_pred HHhhHHHHHHhhcch--hhhHHHHHHHHhhccC---cchhhhhhhccceeEEe------ccchHHHHHHHHHHhc-----
Confidence 344555554444554 7778888887776542 33677788888877666 6888777777777754
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 002424 869 EDHELAAEAFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 869 ~~~~~~~~vl~~lA~l~~~lGd~~~r~~a 897 (924)
.-....+++..||.+-+..|+...+...
T Consensus 424 -~d~~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 424 -SDAQHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred -cCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence 2345567888888888888888876553
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0092 Score=62.35 Aligned_cols=171 Identities=14% Similarity=0.015 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCC
Q 002424 622 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 622 d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
|.....+...|......|+|.+|...|+.....||......-..+.+ + ..+...|+|.+|...+++....++...
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~l--a-~a~y~~~~y~~A~~~~~~fi~~yP~~~-- 76 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLML--A-YAYYKQGDYEEAIAAYERFIKLYPNSP-- 76 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHH--H-HHHHHTT-HHHHHHHHHHHHHH-TT-T--
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHH--H-HHHHHcCCHHHHHHHHHHHHHHCCCCc--
Confidence 34567788999999999999999999999999999755433222221 1 677899999999999999999877533
Q ss_pred CcchHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHcccc-----------hhHHHHHHHHHHHHHh
Q 002424 702 DMDLKTEASLRHARTLLAAN-----------QFSEAAAVAHSLFCMCYKFNLQ-----------VENASVLLLLAEIHKK 759 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G-----------~~~eAl~~l~~aL~~~~~~gd~-----------~~~a~al~~la~i~~~ 759 (924)
....+.+.+|....... ...+|+..++..+...-..... ...++--+..|..|.+
T Consensus 77 ---~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 77 ---KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK 153 (203)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 26688888888875543 2347777777777644422111 1113346778999999
Q ss_pred cCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC
Q 002424 760 SGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN 803 (924)
Q Consensus 760 ~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~ 803 (924)
.|.+..|+..+...+ ...-+....-.|+..|+..+..+|..
T Consensus 154 ~~~y~aA~~r~~~v~---~~yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVI---ENYPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp TT-HHHHHHHHHHHH---HHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred cccHHHHHHHHHHHH---HHCCCCchHHHHHHHHHHHHHHhCCh
Confidence 999999988877654 45666777778999999999999997
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0011 Score=76.35 Aligned_cols=205 Identities=13% Similarity=0.022 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.....+|..+.--|++.+|.+.+-.+-..=+..+. .|+ ..+ ...-..|+.++|..++..+..+++...
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp--aWl---~fg-hsfa~e~EhdQAmaaY~tAarl~~G~h------ 380 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP--AWL---AFG-HSFAGEGEHDQAMAAYFTAARLMPGCH------ 380 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH--HHH---HHh-HHhhhcchHHHHHHHHHHHHHhccCCc------
Confidence 56677787888889999999999877765443333 232 111 334468999999999999999877544
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH-
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL- 784 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~- 784 (924)
.=.+-+|.-+.+.+++.-|-+.+.+++.+|... .-++..+|-|....+.+.+|..++..++..........
T Consensus 381 --lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D------plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~ 452 (611)
T KOG1173|consen 381 --LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD------PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI 452 (611)
T ss_pred --chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc------chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc
Confidence 224557777889999999999999999887633 33667788888899999999999999997776665544
Q ss_pred -HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 785 -LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 785 -~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
++.. ..+||.++..++.. ++|+..++.+|...-.. +.++..+|-+|.- .|.+..|++++.+|+.
T Consensus 453 ~w~p~-~~NLGH~~Rkl~~~--~eAI~~~q~aL~l~~k~------~~~~asig~iy~l------lgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 453 FWEPT-LNNLGHAYRKLNKY--EEAIDYYQKALLLSPKD------ASTHASIGYIYHL------LGNLDKAIDHFHKALA 517 (611)
T ss_pred chhHH-HHhHHHHHHHHhhH--HHHHHHHHHHHHcCCCc------hhHHHHHHHHHHH------hcChHHHHHHHHHHHh
Confidence 4444 55699999999998 99999999998876543 5578889999998 8999999999999997
Q ss_pred HH
Q 002424 864 EL 865 (924)
Q Consensus 864 ~f 865 (924)
+-
T Consensus 518 l~ 519 (611)
T KOG1173|consen 518 LK 519 (611)
T ss_pred cC
Confidence 54
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0016 Score=62.03 Aligned_cols=114 Identities=20% Similarity=0.116 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN-LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 786 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~g-d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 786 (924)
++.+..+..+-..|+.++|+..+++++.. | +.....++++.+|..+...|++++|+..+.+++. +..++.+.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~---~~p~~~~~ 74 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALE---EFPDDELN 74 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcccc
Confidence 46788999999999999999999999883 3 2344578999999999999999999999988764 44444455
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHH
Q 002424 787 ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI 833 (924)
Q Consensus 787 A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~ 833 (924)
..+...++.++..+|++ ++|+..+-.++..-.. .+.+|...+
T Consensus 75 ~~l~~f~Al~L~~~gr~--~eAl~~~l~~la~~~~---~y~ra~~~y 116 (120)
T PF12688_consen 75 AALRVFLALALYNLGRP--KEALEWLLEALAETLP---RYRRAIRFY 116 (120)
T ss_pred HHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 56666688888999999 9999998777654333 666666543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.015 Score=61.17 Aligned_cols=211 Identities=16% Similarity=0.029 Sum_probs=147.9
Q ss_pred hhhhhHHHHHHHHHHhhCchHHHHhH---HHHHHhhcCCC-CChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhc
Q 002424 582 QLVGSSYLLRATAWEAYGSAPLTRVN---TLIYATCFSDG-SSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLS 657 (924)
Q Consensus 582 ~l~g~~~~l~a~~W~~~G~~~ls~~~---~~~~~~~~~~~-~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~ 657 (924)
+........+-..|..++...--.+. +.+ .+ +... .-.++.=..+-.+..+....|+.+.|...+++...+||
T Consensus 7 ~~~~~~l~~~~~~wr~~~~rnseevv~l~~~~-~~-~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp- 83 (289)
T KOG3060|consen 7 DVSWEELRDQMRKWREETVRNSEEVVQLGSEV-LN-YSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP- 83 (289)
T ss_pred HHHHHHHHHHHHHHHhccccCHHHHHHHHHHH-HH-HhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC-
Confidence 34444444555589888776544442 222 11 2222 24556666777788888899999999999999999995
Q ss_pred cCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 002424 658 VSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMC 737 (924)
Q Consensus 658 ~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~ 737 (924)
+..+...+.- .+.-..|+|.+|.+++++++. . ||. -....-+..-++.++|.-.+|++.+...++.+
T Consensus 84 -~S~RV~~lka----m~lEa~~~~~~A~e~y~~lL~--d-----dpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F 150 (289)
T KOG3060|consen 84 -GSKRVGKLKA----MLLEATGNYKEAIEYYESLLE--D-----DPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDKF 150 (289)
T ss_pred -CChhHHHHHH----HHHHHhhchhhHHHHHHHHhc--c-----Ccc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh
Confidence 4445444441 355578999999999999988 2 333 34455588888899999999999999998865
Q ss_pred HHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHH
Q 002424 738 YKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN-HAKMASNLIQQAL 816 (924)
Q Consensus 738 ~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~-~~~~Al~lLe~aL 816 (924)
-.. ..++..++++|...|++.+|.-++.+.+-+- |+.. ....++|+++.-+|-. ..+-|+.++++++
T Consensus 151 ~~D------~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-----P~n~-l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 151 MND------QEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-----PFNP-LYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred cCc------HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-----CCcH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 422 6789999999999999999999998876542 1111 1223466666555543 3478999999998
Q ss_pred hHHH
Q 002424 817 PLIL 820 (924)
Q Consensus 817 p~vl 820 (924)
.+..
T Consensus 219 kl~~ 222 (289)
T KOG3060|consen 219 KLNP 222 (289)
T ss_pred HhCh
Confidence 8754
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.15 Score=65.12 Aligned_cols=193 Identities=13% Similarity=0.101 Sum_probs=121.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..+...|++++|...+... . .| ..+++.++..+...|+.++|++.++++... |....... ...
T Consensus 532 ~~y~k~G~~~~A~~~f~~~-~-------~d----~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~----g~~Pd~~T-~~~ 594 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH-E-------KD----VVSWNILLTGYVAHGKGSMAVELFNRMVES----GVNPDEVT-FIS 594 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc-C-------CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCccc-HHH
Confidence 4555678888888777664 1 13 356777888888999999999999887652 33322222 222
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+-..+.+.|..++|..++.+.. ..+|..... .....|..++...|.. ++|.+++++. |. ..+ +.++
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~---~~~gi~P~~-~~y~~lv~~l~r~G~~--~eA~~~~~~m-~~---~pd----~~~~ 660 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSME---EKYSITPNL-KHYACVVDLLGRAGKL--TEAYNFINKM-PI---TPD----PAVW 660 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHH---HHhCCCCch-HHHHHHHHHHHhCCCH--HHHHHHHHHC-CC---CCC----HHHH
Confidence 2245778899999888887553 233432222 3345577888888987 9999988873 31 122 2333
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLAL 908 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~~~ 908 (924)
..|-..+.. .++.+.+....++.++ ++ ......+..++.+|...|+.+++.+.....++-|...
T Consensus 661 ~aLl~ac~~------~~~~e~~e~~a~~l~~----l~--p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 661 GALLNACRI------HRHVELGELAAQHIFE----LD--PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred HHHHHHHHH------cCChHHHHHHHHHHHh----hC--CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence 333333333 3555544443333333 21 1234567889999999999999888888888777643
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00097 Score=60.69 Aligned_cols=81 Identities=25% Similarity=0.173 Sum_probs=72.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcccch---hHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHH
Q 002424 717 LLAANQFSEAAAVAHSLFCMCYKFNLQV---ENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTL 793 (924)
Q Consensus 717 l~~~G~~~eAl~~l~~aL~~~~~~gd~~---~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~L 793 (924)
..+.|||.+|++.+.+....+...+... .-..+++.+|.++...|++++|+..+.+|+.++++.++....+.++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 3689999999999999999888766655 5566899999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 002424 794 AELW 797 (924)
Q Consensus 794 a~l~ 797 (924)
..+.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 8764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0027 Score=78.96 Aligned_cols=233 Identities=11% Similarity=0.009 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
....++..+...++..|++++|+.+++++...- ...... .+......+...|++++|.+++..+... ...
T Consensus 288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g--~~pd~~---t~~~ll~a~~~~g~~~~a~~i~~~m~~~--g~~--- 357 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG--VSIDQF---TFSIMIRIFSRLALLEHAKQAHAGLIRT--GFP--- 357 (697)
T ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHH---HHHHHHHHHHhccchHHHHHHHHHHHHh--CCC---
Confidence 466777888888888888888888888775431 111111 1121115667788888888888877663 111
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~ 782 (924)
+ -..+...++..+.+.|+.++|.+.++++.. ....++..+...|.+.|+.++|+..+.+.... |.
T Consensus 358 ~--d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~----g~ 422 (697)
T PLN03081 358 L--DIVANTALVDLYSKWGRMEDARNVFDRMPR---------KNLISWNALIAGYGNHGRGTKAVEMFERMIAE----GV 422 (697)
T ss_pred C--CeeehHHHHHHHHHCCCHHHHHHHHHhCCC---------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC
Confidence 1 245667788888888888888888876632 12345677777888888888888888775532 22
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 002424 783 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQAS 862 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~ 862 (924)
..- ..+...+-..+...|.. ++|.+++++.... .| ..-....|..+..++.. .|+.++|.+.+++
T Consensus 423 ~Pd-~~T~~~ll~a~~~~g~~--~~a~~~f~~m~~~---~g-~~p~~~~y~~li~~l~r------~G~~~eA~~~~~~-- 487 (697)
T PLN03081 423 APN-HVTFLAVLSACRYSGLS--EQGWEIFQSMSEN---HR-IKPRAMHYACMIELLGR------EGLLDEAYAMIRR-- 487 (697)
T ss_pred CCC-HHHHHHHHHHHhcCCcH--HHHHHHHHHHHHh---cC-CCCCccchHhHHHHHHh------cCCHHHHHHHHHH--
Confidence 211 12234455566677877 8888888776542 11 12233456666766666 7777777666543
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002424 863 EELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 901 (924)
Q Consensus 863 ~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f 901 (924)
++... -..++..+...+...|+.+.+..++...
T Consensus 488 -----~~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 488 -----APFKP-TVNMWAALLTACRIHKNLELGRLAAEKL 520 (697)
T ss_pred -----CCCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 33221 2346777888889999999888776544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0025 Score=64.28 Aligned_cols=130 Identities=12% Similarity=0.067 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh
Q 002424 680 HLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK 759 (924)
Q Consensus 680 ~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~ 759 (924)
.|..+...+..++.. .+....+.++++.|.++...|++++|+..+++++.+. .+......++..+|.++..
T Consensus 14 ~~~~~~~~l~~~~~~------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~---~~~~~~~~~~~~lg~~~~~ 84 (168)
T CHL00033 14 TFTIVADILLRILPT------TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE---IDPYDRSYILYNIGLIHTS 84 (168)
T ss_pred ccccchhhhhHhccC------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---ccchhhHHHHHHHHHHHHH
Confidence 355555555444321 1233478899999999999999999999999998752 2334456789999999999
Q ss_pred cCChhhhHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 760 SGNAVLGIPYALASLSFCQLLNL-DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 760 ~G~~~~Al~~l~~AL~la~~~g~-~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
.|+++.|+..+.+|+.+-...+. ....+.+...+|.+...+|+. ++|+..+++++....
T Consensus 85 ~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~--~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 85 NGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDS--EIAEAWFDQAAEYWK 144 (168)
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccH--HHHHHHHHHHHHHHH
Confidence 99999999999999987432221 112223333344444477776 878877777776643
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.044 Score=66.68 Aligned_cols=262 Identities=18% Similarity=0.079 Sum_probs=160.5
Q ss_pred HHHHHHHHHhhCchHHHHhHHHHH-HhhcCCC----CChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchH
Q 002424 588 YLLRATAWEAYGSAPLTRVNTLIY-ATCFSDG----SSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR 662 (924)
Q Consensus 588 ~~l~a~~W~~~G~~~ls~~~~~~~-~~~~~~~----~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~ 662 (924)
-..--.+|..+-...++.+.+.+- +..+-.. ...+-.+....=.|.+...+|++++|.++.++++...+......
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~ 495 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS 495 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence 344457888888888888876441 2222222 22333444444456666779999999999999999877544422
Q ss_pred HHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q 002424 663 ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL 742 (924)
Q Consensus 663 ~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd 742 (924)
.++++...+..+.-+|++++|..+..++...++..+ -......+.+..+.++.++|+-..|...........+-...
T Consensus 496 -r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 496 -RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred -hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 233333333788899999999999999999877665 45667778889999999999433333333222222221122
Q ss_pred chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 743 QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN-LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 743 ~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g-~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
.....-.+...+.++...-+.+.+...+..++++..... .+.....+...|+.+....|+. ++|...++++......
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl--~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDL--DKALAQLDELERLLLN 650 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHhcC
Confidence 222111223333333333335555555555555553333 3333344445799999999999 9999999999888766
Q ss_pred h-CCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 002424 822 H-GGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 860 (924)
Q Consensus 822 ~-gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~ 860 (924)
. ...+-.|.++..-.....+ .|+.+.+..++.+
T Consensus 651 ~~~~~~~~a~~~~v~~~lwl~------qg~~~~a~~~l~~ 684 (894)
T COG2909 651 GQYHVDYLAAAYKVKLILWLA------QGDKELAAEWLLK 684 (894)
T ss_pred CCCCchHHHHHHHhhHHHhcc------cCCHHHHHHHHHh
Confidence 6 4555555555554444555 5666555555554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.022 Score=61.32 Aligned_cols=187 Identities=13% Similarity=0.078 Sum_probs=120.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
...+..|+|++|...++++....+ +......+.+.+|.++...|+|++|...+++.+... .+......++..
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP-----~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~---P~~~~~~~a~Y~ 111 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYP-----FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN---PTHPNIDYVLYM 111 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---cCCCchHHHHHH
Confidence 466789999999999999988654 334466778999999999999999999999998843 344455778888
Q ss_pred HHHHHHhcCC-----------hhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHhHHH
Q 002424 753 LAEIHKKSGN-----------AVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN-HAKMASNLIQQALPLIL 820 (924)
Q Consensus 753 la~i~~~~G~-----------~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~-~~~~Al~lLe~aLp~vl 820 (924)
+|.++...+. ..+=.....+|+ ..+-.+-..-... +..+|...+..+-..
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~----------------~~~~~li~~yP~S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAF----------------RDFSKLVRGYPNSQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHH----------------HHHHHHHHHCcCChhHHHHHHHHHHHHHH--
Confidence 8877655441 111111112222 2222222222222 223333333333211
Q ss_pred hhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002424 821 GHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAAL 900 (924)
Q Consensus 821 ~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~ 900 (924)
-|.--+..|+-|.. .|.+..|+.-++..++.|. .-....++++.+...|..+|+.+++.+++..
T Consensus 174 -------la~~e~~ia~~Y~~------~~~y~AA~~r~~~v~~~Yp---~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 174 -------LAKYELSVAEYYTK------RGAYVAVVNRVEQMLRDYP---DTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred -------HHHHHHHHHHHHHH------cCchHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 12222345566666 6777777777777776664 4455778999999999999999998887765
Q ss_pred H
Q 002424 901 F 901 (924)
Q Consensus 901 f 901 (924)
.
T Consensus 238 l 238 (243)
T PRK10866 238 I 238 (243)
T ss_pred H
Confidence 4
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.042 Score=59.15 Aligned_cols=173 Identities=16% Similarity=0.026 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
.......|......|+|++|...++.+...+|......-. .+.++ ..++..+++.+|...+++...+.+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a--~l~la-~ayy~~~~y~~A~~~~e~fi~~~P~~~----- 103 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQV--QLDLI-YAYYKNADLPLAQAAIDRFIRLNPTHP----- 103 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH--HHHHH-HHHHhcCCHHHHHHHHHHHHHhCcCCC-----
Confidence 4456778888889999999999999999988844322111 11222 678899999999999999999877433
Q ss_pred hHHHHHHHHHHHHHHcC---------------CHH---HHHHHHHHHHHHHHHcccchh--------------HHHHHHH
Q 002424 705 LKTEASLRHARTLLAAN---------------QFS---EAAAVAHSLFCMCYKFNLQVE--------------NASVLLL 752 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G---------------~~~---eAl~~l~~aL~~~~~~gd~~~--------------~a~al~~ 752 (924)
....+.+.+|......+ |.. .|++.+++.+...- +..- -++--+.
T Consensus 104 ~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP---~S~ya~~A~~rl~~l~~~la~~e~~ 180 (243)
T PRK10866 104 NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP---NSQYTTDATKRLVFLKDRLAKYELS 180 (243)
T ss_pred chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc---CChhHHHHHHHHHHHHHHHHHHHHH
Confidence 25788888888765554 233 45566666655322 2211 1223557
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQ 813 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe 813 (924)
.|..|.+.|.+..|+.-+...+ ..+-.....-+|+..|.+.+..+|.. ++|.....
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~---~~Yp~t~~~~eal~~l~~ay~~lg~~--~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQML---RDYPDTQATRDALPLMENAYRQLQLN--AQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHH---HHCCCCchHHHHHHHHHHHHHHcCCh--HHHHHHHH
Confidence 7888999999988877776554 46666677888999999999999999 88877543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0041 Score=59.23 Aligned_cols=101 Identities=26% Similarity=0.212 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHH
Q 002424 748 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL-DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLE 826 (924)
Q Consensus 748 ~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~-~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~ 826 (924)
+++..+|.+|...|++++|++++.+|+.. |. .....++++.+|.++..+|++ ++|+.++++.+. ++.+..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~----gL~~~~~~~a~i~lastlr~LG~~--deA~~~L~~~~~---~~p~~~ 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA----GLSGADRRRALIQLASTLRNLGRY--DEALALLEEALE---EFPDDE 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCchHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHH---HCCCcc
Confidence 57889999999999999999999999873 32 335567899999999999999 999999998864 445544
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 827 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 827 ~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
....+...+|-+... .|++.+|+..+-.++.
T Consensus 73 ~~~~l~~f~Al~L~~------~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 LNAALRVFLALALYN------LGRPKEALEWLLEALA 103 (120)
T ss_pred ccHHHHHHHHHHHHH------CCCHHHHHHHHHHHHH
Confidence 555555667777777 8999999999888775
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0032 Score=58.61 Aligned_cols=103 Identities=15% Similarity=0.023 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++..+|..+..+|+|++|...++.+...++........ .+.++ ..++..|++++|...++.+....+.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~~l~-~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~ 74 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNA--HYWLG-EAYYAQGKYADAAKAFLAVVKKYPKS-----PK 74 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHH--HHHHH-HHHHhhccHHHHHHHHHHHHHHCCCC-----Cc
Confidence 467889999999999999999999999887643221111 11111 67889999999999999998864321 11
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
...+....+.++...|++++|...+++++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 75 APDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred ccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3577899999999999999999999998874
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.044 Score=57.47 Aligned_cols=179 Identities=10% Similarity=-0.034 Sum_probs=127.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 002424 716 TLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAE 795 (924)
Q Consensus 716 ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~ 795 (924)
.+....+|+.|...+..+..-...-......+.+.=..|.+........++..++.+|..+..++|-+.-.|.++-.-|.
T Consensus 40 afRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 40 AFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAK 119 (308)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 33445566666666666654333333334445555555556667777788888888888888889998888888887777
Q ss_pred HHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHH
Q 002424 796 LWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAA 875 (924)
Q Consensus 796 l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~ 875 (924)
+... -.| +.|+.++.+++..+.+.+.....-..+--.++.+.. ...+.+|--.+.+=..++..+.....++
T Consensus 120 ~len-v~P--d~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr------l~kf~Eaa~a~lKe~~~~~~~~~y~~~~ 190 (308)
T KOG1585|consen 120 ALEN-VKP--DDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR------LEKFTEAATAFLKEGVAADKCDAYNSQC 190 (308)
T ss_pred Hhhc-CCH--HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh------hHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence 7643 345 999999999999988766555544555556677776 5666666667777777777888888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002424 876 EAFYLIAIVFDKLGRLAEREEAAALFKE 903 (924)
Q Consensus 876 ~vl~~lA~l~~~lGd~~~r~~aa~~f~~ 903 (924)
..+..+-.+|....|...++.+.....|
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 8888888888888888887776555333
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.03 Score=58.55 Aligned_cols=177 Identities=16% Similarity=0.069 Sum_probs=119.0
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
+.....++..|...+..|+|.+|++.++.+.... ........+++.+|.++...|++..|+..+.+-+.. +-..
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~---P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~---yP~~ 75 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRY---PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL---YPNS 75 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH----TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----TT-
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCC
Confidence 3467889999999999999999999999987743 445566788999999999999999999998876654 3333
Q ss_pred HHHHHHHHHHHHHHHHcCCC---------hHHHHHHHHHHHHhHHHhhCCHHHHH------------HHHHHHHHhhhcC
Q 002424 784 LLKASATLTLAELWLSFGPN---------HAKMASNLIQQALPLILGHGGLELRA------------RAFIAEAKCLLSD 842 (924)
Q Consensus 784 ~~~A~al~~La~l~~~lG~~---------~~~~Al~lLe~aLp~vl~~gd~~~~A------------~a~~~LAr~~la~ 842 (924)
.....|+..+|..+..+... ...+|...++..+...=.+.- ...| .--+..|+-+..
T Consensus 76 ~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y-~~~A~~~l~~l~~~la~~e~~ia~~Y~~- 153 (203)
T PF13525_consen 76 PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY-AEEAKKRLAELRNRLAEHELYIARFYYK- 153 (203)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 44556677777765543311 224666666666544322211 1122 222334555555
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 843 PSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 843 ~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
.|.+..|+..++..++.|- +.....+++..++..|..+|+...++.
T Consensus 154 -----~~~y~aA~~r~~~v~~~yp---~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 154 -----RGKYKAAIIRFQYVIENYP---DTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp -----TT-HHHHHHHHHHHHHHST---TSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred -----cccHHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 7889999988888887764 555667799999999999999996544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0055 Score=71.46 Aligned_cols=157 Identities=16% Similarity=0.093 Sum_probs=117.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHH
Q 002424 631 LIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 710 (924)
Q Consensus 631 La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~ 710 (924)
.+..++..|+..+|..+|.+|.+--|. ...+|..+. .......+++.|+.++.++... + +...++
T Consensus 590 ~ake~w~agdv~~ar~il~~af~~~pn--seeiwlaav----Kle~en~e~eraR~llakar~~----s-----gTeRv~ 654 (913)
T KOG0495|consen 590 YAKEKWKAGDVPAARVILDQAFEANPN--SEEIWLAAV----KLEFENDELERARDLLAKARSI----S-----GTERVW 654 (913)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHhCCC--cHHHHHHHH----HHhhccccHHHHHHHHHHHhcc----C-----Ccchhh
Confidence 345566679999999999987765442 234777664 4567888999999999998763 1 145778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASAT 790 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al 790 (924)
+--+.+...+|+.++|++++++++..+... ....+++|+|+.+.++.+.|...+.+.+..|=. -- -..
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~fp~f------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~-~i-----pLW 722 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKSFPDF------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN-SI-----PLW 722 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHhCCch------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC-Cc-----hHH
Confidence 888888999999999999999998854332 567889999999999999999888887776621 11 123
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHH
Q 002424 791 LTLAELWLSFGPNHAKMASNLIQQAL 816 (924)
Q Consensus 791 ~~La~l~~~lG~~~~~~Al~lLe~aL 816 (924)
+.|+.+-...|.. -+|+.+|+.+.
T Consensus 723 llLakleEk~~~~--~rAR~ildrar 746 (913)
T KOG0495|consen 723 LLLAKLEEKDGQL--VRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHhcch--hhHHHHHHHHH
Confidence 4567777777776 77887777664
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0042 Score=65.69 Aligned_cols=159 Identities=17% Similarity=0.078 Sum_probs=121.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHH
Q 002424 629 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 708 (924)
Q Consensus 629 ~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~ 708 (924)
.+++..+-..|+-+.++.++..+....+ ... ..+.. .+...++.|+|.+|...++++..+.+ . .++
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~---~d~-~ll~~--~gk~~~~~g~~~~A~~~~rkA~~l~p----~----d~~ 135 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP---KDR-ELLAA--QGKNQIRNGNFGEAVSVLRKAARLAP----T----DWE 135 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc---ccH-HHHHH--HHHHHHHhcchHHHHHHHHHHhccCC----C----Chh
Confidence 7888888889998888888776443322 111 11111 12678899999999999999988633 2 478
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 788 (924)
++..+|-.+.+.|++++|..-+.+++++.. .+..+..++|..+.-.|+++.|..++..+..... --..
T Consensus 136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~------~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~------ad~~ 203 (257)
T COG5010 136 AWNLLGAALDQLGRFDEARRAYRQALELAP------NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA------ADSR 203 (257)
T ss_pred hhhHHHHHHHHccChhHHHHHHHHHHHhcc------CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC------CchH
Confidence 999999999999999999999999998643 3467889999999999999999999987755442 1125
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHH
Q 002424 789 ATLTLAELWLSFGPNHAKMASNLIQQA 815 (924)
Q Consensus 789 al~~La~l~~~lG~~~~~~Al~lLe~a 815 (924)
+..+|+.++-..|+. .+|.++..+=
T Consensus 204 v~~NLAl~~~~~g~~--~~A~~i~~~e 228 (257)
T COG5010 204 VRQNLALVVGLQGDF--REAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHhhcCCh--HHHHhhcccc
Confidence 667799999999998 8888875543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.053 Score=59.27 Aligned_cols=138 Identities=13% Similarity=0.037 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCch-----H------HHHHHHhhHHHHHHHcCCHHHHHHHHHHH
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKS-----R------ILLLKLQLLHERSLHRGHLKLAQKVCDEL 691 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~-----~------~~~l~l~l~~~~al~~G~~~~A~~~l~~l 691 (924)
|...+....|.++..+|.+++|.+-++..+..-++.+.. + +|.+..++ ..+...||+..|.+.+.++
T Consensus 104 DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql--~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 104 DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQL--KSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHH--HHHhcCCchhhHHHHHHHH
Confidence 456777888999999999999999999888765544432 1 34444333 4677899999999999999
Q ss_pred hhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHH
Q 002424 692 GVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYAL 771 (924)
Q Consensus 692 l~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~ 771 (924)
+.+.+ .-+.....++.++.+.|+...|+.-+..+-.+. ......+.....++...|+.+.++...+
T Consensus 182 lEi~~--------Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs------~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 182 LEIQP--------WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS------QDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred HhcCc--------chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc------ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 98622 135666778899999999999998887765432 2334556666777777777777777666
Q ss_pred HHHHH
Q 002424 772 ASLSF 776 (924)
Q Consensus 772 ~AL~l 776 (924)
+||.+
T Consensus 248 ECLKl 252 (504)
T KOG0624|consen 248 ECLKL 252 (504)
T ss_pred HHHcc
Confidence 66644
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.047 Score=62.11 Aligned_cols=204 Identities=15% Similarity=0.107 Sum_probs=153.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhhccCchH-----HHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 630 KLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR-----ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 630 ~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~-----~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
+++-+....|+|.+|+.-+..+++.+.+...+- ...+.. +.+.....-|-++.|+.++..+..+.. ..+
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~-LlGlys~sv~~~enAe~hf~~a~k~t~-----~~d 401 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHM-LLGLYSHSVNCYENAEFHFIEATKLTE-----SID 401 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHH-HHhhHhhhcchHHHHHHHHHHHHHhhh-----HHH
Confidence 334444568999999999999998655443321 111221 111344567889999999998877533 334
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCM-CYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~-~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
..+-+..++|..+++.|+-+.--+.++..=.. -.....+..++-++...|..-...+++.+|...+.+.|.++..-++-
T Consensus 402 l~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~ 481 (629)
T KOG2300|consen 402 LQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLN 481 (629)
T ss_pred HHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHH
Confidence 68888899999999998765544444422111 00122345567788888888899999999999999999999888899
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhc
Q 002424 784 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 841 (924)
Q Consensus 784 ~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la 841 (924)
.+.+..+..|+.+-..+|.. .++...++-+|.+.....|-..+=-....+-..+.+
T Consensus 482 rL~a~~LvLLs~v~lslgn~--~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a 537 (629)
T KOG2300|consen 482 RLTACSLVLLSHVFLSLGNT--VESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQA 537 (629)
T ss_pred HHHHHHHHHHHHHHHHhcch--HHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999999999999999999988777777778888888
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0064 Score=63.33 Aligned_cols=101 Identities=12% Similarity=0.076 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCC--HHHHHHHHHHHhhhhhccCCCC
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGH--LKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~--~~~A~~~l~~ll~l~~~~~~~D 702 (924)
..+...||.++...|+|++|...++++....|.... ++. .++...+...|+ +.+|..++++++.+ |
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~--~~~---~lA~aL~~~~g~~~~~~A~~~l~~al~~-------d 140 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE--LYA---ALATVLYYQAGQHMTPQTREMIDKALAL-------D 140 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHH---HHHHHHHHhcCCCCcHHHHHHHHHHHHh-------C
Confidence 356788899999999999999999988887664222 111 111012345666 58999999999885 2
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 738 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~ 738 (924)
|. ...++.++|..+...|+|++|+..++++++.-.
T Consensus 141 P~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 141 AN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 22 457888899999999999999999998887544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.002 Score=57.05 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=64.9
Q ss_pred cCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH
Q 002424 678 RGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIH 757 (924)
Q Consensus 678 ~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~ 757 (924)
.|+|..|..+++++....+. ++ ....++.+|.++...|+|.+|++.+++ +. .......+...+|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~----~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~------~~~~~~~~~~l~a~~~ 68 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT----NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LK------LDPSNPDIHYLLARCL 68 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG----TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HT------HHHCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC----Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hC------CCCCCHHHHHHHHHHH
Confidence 68999999999999986321 22 566788899999999999999999987 22 1223366777889999
Q ss_pred HhcCChhhhHHHHHHH
Q 002424 758 KKSGNAVLGIPYALAS 773 (924)
Q Consensus 758 ~~~G~~~~Al~~l~~A 773 (924)
...|++++|+..+.+|
T Consensus 69 ~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 69 LKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHTT-HHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcC
Confidence 9999999999998765
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0056 Score=63.78 Aligned_cols=122 Identities=16% Similarity=0.070 Sum_probs=94.6
Q ss_pred ccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHH
Q 002424 638 FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTL 717 (924)
Q Consensus 638 ~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll 717 (924)
.++.+++...++.+.+.-|. +...|..- +..++..|++++|...++++..+.+ | ...++...|.++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~--~~~~w~~L----g~~~~~~g~~~~A~~a~~~Al~l~P-----~---~~~~~~~lA~aL 117 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ--NSEQWALL----GEYYLWRNDYDNALLAYRQALQLRG-----E---NAELYAALATVL 117 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC--CHHHHHHH----HHHHHHCCCHHHHHHHHHHHHHhCC-----C---CHHHHHHHHHHH
Confidence 56678888888877766442 22234321 1678899999999999999998733 2 467788889875
Q ss_pred -HHcCC--HHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 718 -LAANQ--FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 718 -~~~G~--~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
...|+ +.+|.+.++++++. ......++.++|.++...|++++|+..+.+++++-..
T Consensus 118 ~~~~g~~~~~~A~~~l~~al~~------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 118 YYQAGQHMTPQTREMIDKALAL------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHhcCCCCcHHHHHHHHHHHHh------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 67787 59999999999873 2334679999999999999999999999999988654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.22 Score=58.17 Aligned_cols=125 Identities=14% Similarity=0.073 Sum_probs=79.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHH
Q 002424 629 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 708 (924)
Q Consensus 629 ~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~ 708 (924)
-=-|+.+-++|+|++|+.++++....-....+. -+..++........+ +.....+. -++...+
T Consensus 114 ~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~---~~r~nl~a~~a~l~~----------~~~q~v~~----v~e~sye 176 (652)
T KOG2376|consen 114 ELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE---ERRANLLAVAAALQV----------QLLQSVPE----VPEDSYE 176 (652)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH---HHHHHHHHHHHhhhH----------HHHHhccC----CCcchHH
Confidence 334788888899999999888765431111111 111111101111111 11111122 2234788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---cccch-hH-----HHHHHHHHHHHHhcCChhhhHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYK---FNLQV-EN-----ASVLLLLAEIHKKSGNAVLGIPYA 770 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~---~gd~~-~~-----a~al~~la~i~~~~G~~~~Al~~l 770 (924)
..++.+-+++..|+|.+|++.++.++.+|++ .+|.. .. .-+...++.|+...|+-++|...+
T Consensus 177 l~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 177 LLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 9999999999999999999999999999986 33333 11 236788999999999999998754
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.017 Score=60.10 Aligned_cols=154 Identities=19% Similarity=0.180 Sum_probs=109.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHc
Q 002424 721 NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSF 800 (924)
Q Consensus 721 G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~l 800 (924)
+.|++|.+++.++-..++-.........+-+..|..|.+.|.-..|-..+ ..-+..+- -
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~Y--------------------veA~~cyk-k 86 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTY--------------------VEAANCYK-K 86 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHH--------------------HHHHHHhh-c
Confidence 47888888888776554433333333445555555555555544444444 33344443 3
Q ss_pred CCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 002424 801 GPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYL 880 (924)
Q Consensus 801 G~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~ 880 (924)
+++ ++|..+|+.++.+....|.....|.-+..+|..+-.+ ..+.++|+.++++|.+.|..-+.....-.++.+
T Consensus 87 ~~~--~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd-----l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lK 159 (288)
T KOG1586|consen 87 VDP--EEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD-----LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLK 159 (288)
T ss_pred cCh--HHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh-----HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHH
Confidence 477 8999999999999999999999999999999888874 578899999999999999888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHH
Q 002424 881 IAIVFDKLGRLAEREEAAALFKEYV 905 (924)
Q Consensus 881 lA~l~~~lGd~~~r~~aa~~f~~l~ 905 (924)
.|..-..+|+... +..+|.++.
T Consensus 160 vA~yaa~leqY~~---Ai~iyeqva 181 (288)
T KOG1586|consen 160 VAQYAAQLEQYSK---AIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHH
Confidence 8877666666554 455555543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0046 Score=61.21 Aligned_cols=91 Identities=14% Similarity=0.080 Sum_probs=78.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
......|++++|..+++-+..+ ||. .+..++++|.++..+|+|.+|++.+..++.+. ....+....
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~-------Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~------~ddp~~~~~ 108 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIY-------DAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK------IDAPQAPWA 108 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-------Ccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------CCCchHHHH
Confidence 3556899999999999888775 443 67889999999999999999999999987742 345778889
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
.|.++...|+...|...+..|+.+|
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0051 Score=57.26 Aligned_cols=104 Identities=17% Similarity=0.100 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
...+..|..+...|++++|.+.+++++... .+......++..+|.++.+.|++..|+..+.+++...- ......
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~ 76 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY---PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP---KSPKAP 76 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC---CCCccc
Confidence 467889999999999999999999988632 22233467889999999999999999999998886542 111234
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 788 SATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 788 ~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
.++..+|.++..+|.. ++|..++++++...
T Consensus 77 ~~~~~~~~~~~~~~~~--~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 77 DALLKLGMSLQELGDK--EKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHHhCCh--HHHHHHHHHHHHHC
Confidence 5678899999999998 99999999988763
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0045 Score=62.77 Aligned_cols=92 Identities=14% Similarity=0.112 Sum_probs=73.9
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~ 782 (924)
....+.+.+++|.++...|++++|+.++++++.... +......++..+|.++...|+++.|+..+.+++.+...
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--- 104 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK--- 104 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---
Confidence 345788899999999999999999999999987532 22334678999999999999999999999999987422
Q ss_pred cHHHHHHHHHHHHHHHHcCCC
Q 002424 783 DLLKASATLTLAELWLSFGPN 803 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~ 803 (924)
...+...+|.++..+|..
T Consensus 105 ---~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 105 ---QPSALNNIAVIYHKRGEK 122 (172)
T ss_pred ---cHHHHHHHHHHHHHcCCh
Confidence 234556678888887774
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0017 Score=55.95 Aligned_cols=95 Identities=18% Similarity=0.080 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 788 (924)
+++.+|.++...|++++|+..+++++..... ...++..+|.++...|+++.|+..+.+++.+..... .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD------NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------K 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------h
Confidence 4677889999999999999999998874321 126788999999999999999999999887653322 5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 002424 789 ATLTLAELWLSFGPNHAKMASNLIQQALP 817 (924)
Q Consensus 789 al~~La~l~~~lG~~~~~~Al~lLe~aLp 817 (924)
+...+|.++...|+. ++|..++++++.
T Consensus 70 ~~~~~~~~~~~~~~~--~~a~~~~~~~~~ 96 (100)
T cd00189 70 AYYNLGLAYYKLGKY--EEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHHhH--HHHHHHHHHHHc
Confidence 667789999999998 999999888764
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.054 Score=60.64 Aligned_cols=224 Identities=13% Similarity=0.019 Sum_probs=148.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHH--H---HHH-HhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCC
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI--L---LLK-LQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~--~---~l~-l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
+.-.|.++-..++.+.|..++++++..-|...+... . .+. ...-+..++..|+|..|.+++..++.+.+.
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~---- 281 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS---- 281 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----
Confidence 344455566788999999999999988776655431 1 111 111125778999999999999999997443
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
.....+..+.+++.+..+.|+..+|+.-.+.++.+- ..-+.+++..|.+|...+..+.|...+.+|+..-..
T Consensus 282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD------~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-- 353 (486)
T KOG0550|consen 282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID------SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-- 353 (486)
T ss_pred ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--
Confidence 334467889999999999999999999999988752 233789999999999999999999999999887653
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
...+..|.+....+-.. + +.-+-.+|-+.+.-.+ .....+|..+|-++.-+ ...|.-.+|-.-++++
T Consensus 354 -----~e~r~~l~~A~~aLkkS---k-Rkd~ykilGi~~~as~-~eikkayrk~AL~~Hpd---~~agsq~eaE~kFkev 420 (486)
T KOG0550|consen 354 -----CEIRRTLREAQLALKKS---K-RKDWYKILGISRNASD-DEIKKAYRKLALVHHPD---KNAGSQKEAEAKFKEV 420 (486)
T ss_pred -----cchHHHHHHHHHHHHHh---h-hhhHHHHhhhhhhccc-chhhhHHHHHHHHhCCC---cCcchhHHHHHHHHHH
Confidence 12333344444333321 1 1222334444433222 23334555556545442 2245555666677777
Q ss_pred HHHHHhhcCHHHHHH
Q 002424 862 SEELQVLEDHELAAE 876 (924)
Q Consensus 862 ~~~f~~l~~~~~~~~ 876 (924)
-+.|.-++++....+
T Consensus 421 geAy~il~d~~kr~r 435 (486)
T KOG0550|consen 421 GEAYTILSDPMKRVR 435 (486)
T ss_pred HHHHHHhcCHHHHhh
Confidence 777777777655433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.015 Score=58.90 Aligned_cols=118 Identities=14% Similarity=0.020 Sum_probs=86.8
Q ss_pred ccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 741 NLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 741 gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
......+.++..+|.++...|++++|+.++.+++.+.... ...+.+...+|.++..+|.. ++|+..+++++....
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p 103 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---NDRSYILYNMGIIYASNGEH--DKALEYYHQALELNP 103 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCc
Confidence 4456678899999999999999999999999999876432 22456788999999999998 999999999987532
Q ss_pred hhCCHHHHHHHHHHHHHhhhcCCC-CCCCCChHHHHHHHHHHHHHHHhhc
Q 002424 821 GHGGLELRARAFIAEAKCLLSDPS-FSVSQNPEAVLDPLRQASEELQVLE 869 (924)
Q Consensus 821 ~~gd~~~~A~a~~~LAr~~la~~~-~~~~g~~~~Al~~L~~A~~~f~~l~ 869 (924)
. ...++..+|.++..... ....++.+.|+..+++|.+.+++.-
T Consensus 104 ~------~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~ 147 (172)
T PRK02603 104 K------QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI 147 (172)
T ss_pred c------cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence 1 24455566666655211 0114667777777777777776543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.071 Score=55.96 Aligned_cols=144 Identities=17% Similarity=0.060 Sum_probs=114.4
Q ss_pred cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 742 LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 742 d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
|.++.+...-.-+..|....+|++|-..+++|..--..+....-.|.+.-..+-+...+... .++.++++.+.....+
T Consensus 26 d~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 26 DWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred CchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 33444444445556677888889998888888887777777777788877777777777776 9999999999999999
Q ss_pred hCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHH
Q 002424 822 HGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAER 894 (924)
Q Consensus 822 ~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r 894 (924)
+|++...|-++---|++.-. -+|+.|+..+++|+++++.-+...+.-+-+...++++-.+....++
T Consensus 104 ~GspdtAAmaleKAak~len-------v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALEN-------VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred hCCcchHHHHHHHHHHHhhc-------CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 99999988887777766654 6789999999999999988777777778888888888877666553
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.012 Score=58.39 Aligned_cols=100 Identities=15% Similarity=0.059 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
..+..+..+..+...|++++|...++-+..+ ..+.++-++.+|.++...|++..|+..+.+|+.+.- .+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--dd--- 102 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DA--- 102 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CC---
Confidence 6788999999999999999999999966542 466788999999999999999999999999988863 23
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
+++..++|.+++.+|+. +.|++.++.++..+
T Consensus 103 -p~~~~~ag~c~L~lG~~--~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 103 -PQAPWAAAECYLACDNV--CYAIKALKAVVRIC 133 (157)
T ss_pred -chHHHHHHHHHHHcCCH--HHHHHHHHHHHHHh
Confidence 36678899999999999 99999999999988
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.004 Score=70.95 Aligned_cols=91 Identities=14% Similarity=0.053 Sum_probs=78.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|+|.+|..++++++.+.+ . ...+++.+|.++...|++++|+..+++++.+.. ....++..
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-------~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P------~~~~a~~~ 75 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-------N-NAELYADRAQANIKLGNFTEAVADANKAIELDP------SLAKAYLR 75 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------CCHHHHHH
Confidence 577899999999999999998632 2 357889999999999999999999999988522 34667889
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+|.++...|++..|+..+.+|+.+.
T Consensus 76 lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 76 KGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999876
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0061 Score=58.59 Aligned_cols=91 Identities=13% Similarity=0.076 Sum_probs=51.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++.+|...++++..+.+ . ...+...++.++...|++++|...+++++... .....++..
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~p-------~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~ 90 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYDP-------Y-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD------PDDPRPYFH 90 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhCC-------C-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCChHHHHH
Confidence 344556666666666666655311 1 34555666666666666666666666555421 122445556
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+|.++...|++++|+..+.+++.+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 6666666666666666666665554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.038 Score=60.28 Aligned_cols=173 Identities=15% Similarity=0.054 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC--
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD-- 702 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D-- 702 (924)
-.++.+.|.++.+.|+-..|+.-|.+++++-|.. ...+.|.+ .+.+.+|++++|..-+.+.+..-+.-+..-
T Consensus 72 Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF-----~~ARiQRg-~vllK~Gele~A~~DF~~vl~~~~s~~~~~ea 145 (504)
T KOG0624|consen 72 YQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF-----MAARIQRG-VVLLKQGELEQAEADFDQVLQHEPSNGLVLEA 145 (504)
T ss_pred HHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH-----HHHHHHhc-hhhhhcccHHHHHHHHHHHHhcCCCcchhHHH
Confidence 4678899999999999999999999888764432 22223322 577899999999999999988532111000
Q ss_pred -----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 703 -----MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 703 -----~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+..+...+.....-+...||+..|++++..++++ ..|-+.....+|.+|...|++-.|+..+..+-.+.
T Consensus 146 qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs 219 (504)
T KOG0624|consen 146 QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS 219 (504)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Confidence 0001122223334456779999999999999885 46778888889999999999999999998888777
Q ss_pred HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 002424 778 QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALP 817 (924)
Q Consensus 778 ~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp 817 (924)
..+. .....+..++..+|+. +.++..+++||-
T Consensus 220 ~DnT------e~~ykis~L~Y~vgd~--~~sL~~iRECLK 251 (504)
T KOG0624|consen 220 QDNT------EGHYKISQLLYTVGDA--ENSLKEIRECLK 251 (504)
T ss_pred ccch------HHHHHHHHHHHhhhhH--HHHHHHHHHHHc
Confidence 5443 3445566666667766 666666666553
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.092 Score=58.71 Aligned_cols=210 Identities=17% Similarity=0.078 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccC-
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT- 699 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~- 699 (924)
.++...+....+..+..+|+|+.|..-+.++.+.-|. ....+++.. ..+++.|+|.+...++..+..- ..++
T Consensus 149 ~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr----~~~vlrLa~--r~y~~~g~~~~ll~~l~~L~ka-~~l~~ 221 (400)
T COG3071 149 GDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR----HPEVLRLAL--RAYIRLGAWQALLAILPKLRKA-GLLSD 221 (400)
T ss_pred CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC----ChHHHHHHH--HHHHHhccHHHHHHHHHHHHHc-cCCCh
Confidence 3455666667777777777777777777766654332 112222211 5666777777777777766551 1111
Q ss_pred --------------------CCCcch--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchh
Q 002424 700 --------------------GVDMDL--------------KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE 745 (924)
Q Consensus 700 --------------------~~D~~~--------------~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~ 745 (924)
+.|.++ ..+.....+.-+...|++++|.+.+.+++.. ..|..
T Consensus 222 ~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~---~~D~~- 297 (400)
T COG3071 222 EEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR---QWDPR- 297 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh---ccChh-
Confidence 111111 0112223344445555555555555555541 11111
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH
Q 002424 746 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL 825 (924)
Q Consensus 746 ~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~ 825 (924)
...+ .+ ..+.|++. +....+-.....++++. ..+..||.++..-+. +.+|...++.+++.-.+
T Consensus 298 -L~~~--~~--~l~~~d~~---~l~k~~e~~l~~h~~~p---~L~~tLG~L~~k~~~--w~kA~~~leaAl~~~~s---- 360 (400)
T COG3071 298 -LCRL--IP--RLRPGDPE---PLIKAAEKWLKQHPEDP---LLLSTLGRLALKNKL--WGKASEALEAALKLRPS---- 360 (400)
T ss_pred -HHHH--Hh--hcCCCCch---HHHHHHHHHHHhCCCCh---hHHHHHHHHHHHhhH--HHHHHHHHHHHHhcCCC----
Confidence 1100 00 01222221 11122222224555554 556677777755555 49999999988876544
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 002424 826 ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 867 (924)
Q Consensus 826 ~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~ 867 (924)
+..+..+|+++-+ .|++.+|-+..++|+..+..
T Consensus 361 ---~~~~~~la~~~~~------~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 361 ---ASDYAELADALDQ------LGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred ---hhhHHHHHHHHHH------cCChHHHHHHHHHHHHHhcC
Confidence 4455566667777 78888888888888876654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.046 Score=55.12 Aligned_cols=129 Identities=16% Similarity=0.073 Sum_probs=99.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
......|++.+|..+++++++- +-..| ...++.++...+..|++.+|...++.+.+. ..-....+-++.
T Consensus 97 ~al~elGr~~EA~~hy~qalsG---~fA~d----~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~----~pa~r~pd~~Ll 165 (251)
T COG4700 97 NALAELGRYHEAVPHYQQALSG---IFAHD----AAMLLGLAQAQFAIQEFAAAQQTLEDLMEY----NPAFRSPDGHLL 165 (251)
T ss_pred HHHHHhhhhhhhHHHHHHHhcc---ccCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHhhc----CCccCCCCchHH
Confidence 4667899999999999998871 21123 566888999999999999999999988764 222334557888
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
.|.++...|.+..|.+.+..+++..-. ..+++.-++.+..+|+. .+|..-+.++...+..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg-------~~ar~~Y~e~La~qgr~--~ea~aq~~~v~d~~~r 225 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPG-------PQARIYYAEMLAKQGRL--REANAQYVAVVDTAKR 225 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCC-------HHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHh
Confidence 999999999999999999888776532 24566678888999988 8888877776655543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0034 Score=53.01 Aligned_cols=64 Identities=17% Similarity=0.084 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcC-ChhhhHHHHHHHHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG-NAVLGIPYALASLSF 776 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G-~~~~Al~~l~~AL~l 776 (924)
+.++..+|..+...|+|++|+..+++++... .....++..+|.++...| ++.+|+..+.+|+.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 5788999999999999999999999999852 335779999999999999 799999999999876
|
... |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.034 Score=63.61 Aligned_cols=122 Identities=19% Similarity=0.095 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchH-HHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR-ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~-~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
.+..-.|......|.+++|+..|+.....+| ++. .+-+.- +.++..|+..+|.+.+++++.+ ||.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P---~N~~~~~~~~----~i~~~~nk~~~A~e~~~kal~l-------~P~ 372 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQP---DNPYYLELAG----DILLEANKAKEAIERLKKALAL-------DPN 372 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhCC---CCHHHHHHHH----HHHHHcCChHHHHHHHHHHHhc-------CCC
Confidence 4456666777788999999999998776665 333 232221 7889999999999999999986 444
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIP 768 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~ 768 (924)
......+.|..++..|++.+|+..++..+.. .......+..+|+.|...|+..+|..
T Consensus 373 -~~~l~~~~a~all~~g~~~eai~~L~~~~~~------~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 373 -SPLLQLNLAQALLKGGKPQEAIRILNRYLFN------DPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred -ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc------CCCCchHHHHHHHHHHHhCchHHHHH
Confidence 3678899999999999999999999887641 11223344455555555555544443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.012 Score=68.26 Aligned_cols=190 Identities=15% Similarity=0.071 Sum_probs=136.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
...+..|+..+|.-+++.+..- ||. .++++..+|.++...++-..|+..+.+++++ ......+|+.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkq-------dP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~L------dP~NleaLma 358 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQ-------DPQ-HAEAWQKLGITQAENENEQNAISALRRCLEL------DPTNLEALMA 358 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhh-------ChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhc------CCccHHHHHH
Confidence 4667899999999988887662 554 7899999999999999999999988888763 4556778888
Q ss_pred HHHHHHhcCChhhhHHHHHH--------------------------------------HHHHHHHhCCcHHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALA--------------------------------------SLSFCQLLNLDLLKASATLTLA 794 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~--------------------------------------AL~la~~~g~~~~~A~al~~La 794 (924)
||..|...|.-..|+..+.. =|+.+++.+. ..-+.+...||
T Consensus 359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~LG 437 (579)
T KOG1125|consen 359 LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-KIDPDVQSGLG 437 (579)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-CCChhHHhhhH
Confidence 88888877777777665532 2233333321 12233444455
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHH
Q 002424 795 ELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELA 874 (924)
Q Consensus 795 ~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~ 874 (924)
-++...| +|++|.++++.+|-.- ..-+..++-||-+... ..+.++|+..+++|+++. ..=
T Consensus 438 VLy~ls~--efdraiDcf~~AL~v~------Pnd~~lWNRLGAtLAN------~~~s~EAIsAY~rALqLq------P~y 497 (579)
T KOG1125|consen 438 VLYNLSG--EFDRAVDCFEAALQVK------PNDYLLWNRLGATLAN------GNRSEEAISAYNRALQLQ------PGY 497 (579)
T ss_pred HHHhcch--HHHHHHHHHHHHHhcC------CchHHHHHHhhHHhcC------CcccHHHHHHHHHHHhcC------CCe
Confidence 5554444 4699999999987542 2345677888877666 677889999999999864 333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHH
Q 002424 875 AEAFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 875 ~~vl~~lA~l~~~lGd~~~r~~a 897 (924)
-++.|-+|..+-.+|...++-++
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHHH
Confidence 46788899999999998886664
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.3 Score=51.78 Aligned_cols=193 Identities=20% Similarity=0.096 Sum_probs=133.5
Q ss_pred CHHHHHHHHHHHHHHhhcc-CchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHH
Q 002424 640 GYKEAFSALKIAEEKFLSV-SKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL 718 (924)
Q Consensus 640 ~y~eA~~~L~~a~~~f~~~-~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~ 718 (924)
+.++-.++..+.+.-...- .-..+|.+-.++. ..++..|+.+.|..++.++..-|+. ...+....|..+-
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~-IAAld~~~~~lAq~C~~~L~~~fp~--------S~RV~~lkam~lE 97 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVF-IAALDTGRDDLAQKCINQLRDRFPG--------SKRVGKLKAMLLE 97 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHhCCC--------ChhHHHHHHHHHH
Confidence 3455555555544432221 1234688776654 7889999999999999999886542 4466777888999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 002424 719 AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWL 798 (924)
Q Consensus 719 ~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~ 798 (924)
+.|++.+|++.++..+. .|+... -....+--+....|..-.|+..+..=++..- .-.+|...|++++.
T Consensus 98 a~~~~~~A~e~y~~lL~-----ddpt~~-v~~KRKlAilka~GK~l~aIk~ln~YL~~F~------~D~EAW~eLaeiY~ 165 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLE-----DDPTDT-VIRKRKLAILKAQGKNLEAIKELNEYLDKFM------NDQEAWHELAEIYL 165 (289)
T ss_pred HhhchhhHHHHHHHHhc-----cCcchh-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 99999999999999987 343222 2223445556688999899888877777652 11377888999999
Q ss_pred HcCCChHHHHHHHHHHHHhHHHhhCCHHHH--HHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 002424 799 SFGPNHAKMASNLIQQALPLILGHGGLELR--ARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 866 (924)
Q Consensus 799 ~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~--A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~ 866 (924)
.+|+. ++|.-++|+++-+ -=+..++.+ |..+++.| + .+....|..++.+|+++--
T Consensus 166 ~~~~f--~kA~fClEE~ll~-~P~n~l~f~rlae~~Yt~g-----g-----~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 166 SEGDF--EKAAFCLEELLLI-QPFNPLYFQRLAEVLYTQG-----G-----AENLELARKYYERALKLNP 222 (289)
T ss_pred hHhHH--HHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHh-----h-----HHHHHHHHHHHHHHHHhCh
Confidence 99986 9999999998633 112222222 33344444 2 5678889999999998765
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=1.8 Score=52.54 Aligned_cols=139 Identities=17% Similarity=0.095 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHh-----hHHHHHHH--cCCHHHHHHHHHHHhhhhhcc
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQ-----LLHERSLH--RGHLKLAQKVCDELGVMASSV 698 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~-----l~~~~al~--~G~~~~A~~~l~~ll~l~~~~ 698 (924)
.++..||+.|--.|++.+|...+.+|... .+.+++.+++ ++ ..++. ..+...|..+++.+-..
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqaf-----snAIRlcKEnd~~d~L~-nlal~s~~~d~v~aArYyEe~g~~---- 1037 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQAF-----SNAIRLCKENDMKDRLA-NLALMSGGSDLVSAARYYEELGGY---- 1037 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHH-----HHHHHHHHhcCHHHHHH-HHHhhcCchhHHHHHHHHHHcchh----
Confidence 45677888888888888888877766532 1122211111 11 11121 22334444444433211
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHH---
Q 002424 699 TGVDMDLKTEASLRHARTLLAANQFSEAAAVAHS-----LFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYA--- 770 (924)
Q Consensus 699 ~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~-----aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l--- 770 (924)
--.-..++.+.|-+..|+++.=+ +|++.-+.-|...-...+..-+..+....+|++|..++
T Consensus 1038 -----------~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1038 -----------AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred -----------hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 01223455667777777776532 22222222223333556677788888888999997654
Q ss_pred ---HHHHHHHHHhCCcHH
Q 002424 771 ---LASLSFCQLLNLDLL 785 (924)
Q Consensus 771 ---~~AL~la~~~g~~~~ 785 (924)
.+|+.+|..-|.+.-
T Consensus 1107 r~~~~AlqlC~~~nv~vt 1124 (1416)
T KOG3617|consen 1107 REFSGALQLCKNRNVRVT 1124 (1416)
T ss_pred HHHHHHHHHHhcCCCchh
Confidence 578888876666543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.054 Score=63.02 Aligned_cols=228 Identities=13% Similarity=-0.038 Sum_probs=146.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHH
Q 002424 631 LIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 710 (924)
Q Consensus 631 La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~ 710 (924)
-|..+...|+..+|.-.|+.|...=|.+- ..|.. + +..+...++-..|...+++++.+ ||. -.+++
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~ha--eAW~~-L---G~~qaENE~E~~ai~AL~rcl~L-------dP~-NleaL 356 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQHA--EAWQK-L---GITQAENENEQNAISALRRCLEL-------DPT-NLEAL 356 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChHHH--HHHHH-h---hhHhhhccchHHHHHHHHHHHhc-------CCc-cHHHH
Confidence 34456667777777777776665433111 12221 1 14455566666777777777765 332 45677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH--------------------------------------HHcccchhHHHHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMC--------------------------------------YKFNLQVENASVLLL 752 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~--------------------------------------~~~gd~~~~a~al~~ 752 (924)
..+|..+.-.|.-.+|++++..-+..- +..+. ..-.++...
T Consensus 357 maLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~ 435 (579)
T KOG1125|consen 357 MALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-KIDPDVQSG 435 (579)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-CCChhHHhh
Confidence 777777777777777777776554321 11110 112447889
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
||.+|.-.|++++|+.++..||..- .--.....+||.++.--.+. ++|+.-|++||.+- .-+.| +.
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~------Pnd~~lWNRLGAtLAN~~~s--~EAIsAY~rALqLq----P~yVR--~R 501 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVK------PNDYLLWNRLGATLANGNRS--EEAISAYNRALQLQ----PGYVR--VR 501 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcC------CchHHHHHHhhHHhcCCccc--HHHHHHHHHHHhcC----CCeee--ee
Confidence 9999999999999999999998763 11224466788877655556 99999999997653 32333 55
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHH----HHHHHHHHHHHhcCCHHH
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAA----EAFYLIAIVFDKLGRLAE 893 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~----~vl~~lA~l~~~lGd~~~ 893 (924)
+.||-+++. .|.+.+|+.+|=.|+.+-++-......+ .+...|-.+.-..+..+.
T Consensus 502 yNlgIS~mN------lG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 502 YNLGISCMN------LGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred hhhhhhhhh------hhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 688888888 8999999999999999888733333332 333333355555565553
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.018 Score=65.55 Aligned_cols=95 Identities=11% Similarity=0.044 Sum_probs=76.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHH
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 707 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a 707 (924)
+...|......|+|++|+..+++|.+..|... ..+. .++ ..++..|++.+|...+++++.+.+ . ..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~--~a~~---~~a-~~~~~~g~~~eAl~~~~~Al~l~P-------~-~~ 70 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA--ELYA---DRA-QANIKLGNFTEAVADANKAIELDP-------S-LA 70 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHH---HHH-HHHHHcCCHHHHHHHHHHHHHhCc-------C-CH
Confidence 45667888899999999999999998766321 2221 111 577889999999999999998733 2 46
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
.+++++|.++..+|+|++|+..+++++.+
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 78999999999999999999999999885
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0093 Score=56.54 Aligned_cols=94 Identities=13% Similarity=0.022 Sum_probs=80.8
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 753 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~l 753 (924)
..-.-|++++|.+.+.+++.+.+. .+-++++.+..+.-+|+.++|++-++++++++. +..+....+...+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~--------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag--~~trtacqa~vQR 121 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE--------RASAYNNRAQALRLQGDDEEALDDLNKALELAG--DQTRTACQAFVQR 121 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc--------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcC--ccchHHHHHHHHH
Confidence 445789999999999999998652 678899999999999999999999999999754 3345567789999
Q ss_pred HHHHHhcCChhhhHHHHHHHHHHH
Q 002424 754 AEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 754 a~i~~~~G~~~~Al~~l~~AL~la 777 (924)
|.+|...|+-+.|...+..|..+-
T Consensus 122 g~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 122 GLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHhCchHHHHHhHHHHHHhC
Confidence 999999999999999998876654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.014 Score=56.13 Aligned_cols=98 Identities=17% Similarity=0.091 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH-HHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL-LKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~-l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
..+...+|..+...|+|++|...++.+.+..+.. ...+. +. ..+...|++++|...++++..+.+ +
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la-----~~~~~~~~~~~A~~~~~~~~~~~p-----~- 83 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN--SRYWLGLA-----ACCQMLKEYEEAIDAYALAAALDP-----D- 83 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc--HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCC-----C-
Confidence 4567889999999999999999999988776532 12221 22 566788999999999999887522 1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMC 737 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~ 737 (924)
.....+.+|.++...|++++|+..++.++...
T Consensus 84 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 84 --DPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46778899999999999999999999998853
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0056 Score=54.15 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=63.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Q 002424 720 ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS 799 (924)
Q Consensus 720 ~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~ 799 (924)
.|+|+.|+..++++++.... + . ....+..+|.++.+.|++.+|+..+.+ +.... . ...+...+|.++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~--~-~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~----~--~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT--N-P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP----S--NPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG--T-H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH----C--HHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC--C-h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC----C--CHHHHHHHHHHHHH
Confidence 68999999999999885321 1 1 666788899999999999999999987 32222 1 13455567999999
Q ss_pred cCCChHHHHHHHHHHH
Q 002424 800 FGPNHAKMASNLIQQA 815 (924)
Q Consensus 800 lG~~~~~~Al~lLe~a 815 (924)
+|+. ++|+.+++++
T Consensus 71 l~~y--~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKY--EEAIKALEKA 84 (84)
T ss_dssp TT-H--HHHHHHHHHH
T ss_pred hCCH--HHHHHHHhcC
Confidence 9998 9999999874
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.087 Score=64.57 Aligned_cols=243 Identities=15% Similarity=0.037 Sum_probs=162.1
Q ss_pred HHHHHHHHHHhhCchHHHHhHHHH-HHhh-cCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHH
Q 002424 587 SYLLRATAWEAYGSAPLTRVNTLI-YATC-FSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRIL 664 (924)
Q Consensus 587 ~~~l~a~~W~~~G~~~ls~~~~~~-~~~~-~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~ 664 (924)
...+...-|..+|+..=....+.- +... .-| ...+.+++.||..+..--+-..|...+..|.++=+ ++...|
T Consensus 456 ~~~e~~~~w~a~~~~rK~~~~al~ali~alrld----~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa--tdaeaa 529 (1238)
T KOG1127|consen 456 LECENSEFWVALGCMRKNSALALHALIRALRLD----VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA--TDAEAA 529 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhhhhH
Confidence 344555667777665544333321 1111 112 23578889999888776677777777776654421 111122
Q ss_pred H-HHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 002424 665 L-LKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ 743 (924)
Q Consensus 665 ~-l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~ 743 (924)
. +. ..+....+|++|..++......++. ...-..+..+|-++...+++..|+..++.+++..
T Consensus 530 aa~a-----dtyae~~~we~a~~I~l~~~qka~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d------ 592 (1238)
T KOG1127|consen 530 AASA-----DTYAEESTWEEAFEICLRAAQKAPA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD------ 592 (1238)
T ss_pred HHHH-----HHhhccccHHHHHHHHHHHhhhchH------HHHHhhhhhccccccCccchhhHHHHHHHHhcCC------
Confidence 2 22 6777899999999997666553221 1234556679999999999999999999998732
Q ss_pred hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhC
Q 002424 744 VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG 823 (924)
Q Consensus 744 ~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~g 823 (924)
.--.+++..+|++|.++|++..|+-.+.+|..+ +.....++.-.|-+.+.+|.. .+|++.+..++-..-
T Consensus 593 PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L------rP~s~y~~fk~A~~ecd~GkY--keald~l~~ii~~~s--- 661 (1238)
T KOG1127|consen 593 PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL------RPLSKYGRFKEAVMECDNGKY--KEALDALGLIIYAFS--- 661 (1238)
T ss_pred chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc------CcHhHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHH---
Confidence 223678999999999999999999888777554 233445667788889999998 999999988875542
Q ss_pred CHHHHHHHHHHHHHhhhcCCCC-CCCCChHHHHHHHHHHHHHHH
Q 002424 824 GLELRARAFIAEAKCLLSDPSF-SVSQNPEAVLDPLRQASEELQ 866 (924)
Q Consensus 824 d~~~~A~a~~~LAr~~la~~~~-~~~g~~~~Al~~L~~A~~~f~ 866 (924)
..-.+...||.|++.++.. -..|-.-+|.++++++.+.|.
T Consensus 662 ---~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 662 ---LERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred ---HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3334555666666653221 114556678888888887775
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.013 Score=50.38 Aligned_cols=95 Identities=14% Similarity=0.048 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
++.++|..+...|++++|...++++....+... ..+. .++ ..+...|++++|...+.++....+ .+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~---~~~-~~~~~~~~~~~a~~~~~~~~~~~~----~~---- 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA--DAYY---NLA-AAYYKLGKYEEALEDYEKALELDP----DN---- 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH--HHHH---HHH-HHHHHHHHHHHHHHHHHHHHhCCC----cc----
Confidence 467889999999999999999999887755322 1111 111 566778999999999999887532 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~ 735 (924)
..+....+.++...|++++|.+.+..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 68 AKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 26788899999999999999999988765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=96.64 E-value=2.4 Score=50.67 Aligned_cols=155 Identities=20% Similarity=0.118 Sum_probs=114.0
Q ss_pred ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccC
Q 002424 620 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 620 ~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~ 699 (924)
+......++.-||+++-..|+|++|+..++.|.+.=|...+ .-+++ ...+-+.|++.+|.+.++.+..+ +
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e--ly~~K----arilKh~G~~~~Aa~~~~~Ar~L----D 258 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE--LYMTK----ARILKHAGDLKEAAEAMDEAREL----D 258 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH--HHHHH----HHHHHHCCCHHHHHHHHHHHHhC----C
Confidence 34456788899999999999999999999999987654333 12222 15667999999999999998775 3
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchh---H---HHHHHHHHHHHHhcCChhhhHHHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE---N---ASVLLLLAEIHKKSGNAVLGIPYALAS 773 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~---~---a~al~~la~i~~~~G~~~~Al~~l~~A 773 (924)
..|+ ..-..-+.++++.|+.++|.+.+..--. ...++.. . ...+..-|..|.+.|++..|+-.+...
T Consensus 259 ~~DR----yiNsK~aKy~LRa~~~e~A~~~~~~Ftr---~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 259 LADR----YINSKCAKYLLRAGRIEEAEKTASLFTR---EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred hhhH----HHHHHHHHHHHHCCCHHHHHHHHHhhcC---CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3353 3355678888999999999998863321 1112211 1 446788999999999999999999999
Q ss_pred HHHHHHhCCcHHHHHHHH
Q 002424 774 LSFCQLLNLDLLKASATL 791 (924)
Q Consensus 774 L~la~~~g~~~~~A~al~ 791 (924)
..+......+-.--+..+
T Consensus 332 ~k~f~~~~~DQfDFH~Yc 349 (517)
T PF12569_consen 332 LKHFDDFEEDQFDFHSYC 349 (517)
T ss_pred HHHHHHHhcccccHHHHH
Confidence 999887776655444443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.058 Score=62.23 Aligned_cols=158 Identities=15% Similarity=0.069 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.++++.++|..+...|+|+.|...++++++.++.-.. .-......++.....+..-+ +|
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~--------------ls~lk~~Ek~~k~~e~~a~~-------~p 355 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL--------------LSKLKEAEKALKEAERKAYI-------NP 355 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH--------------HHHHHHHHHHHHHHHHHHhh-------Ch
Confidence 4566667777888899999999999998877664111 11122223333333333322 23
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
+. ++-....|.-....|+|..|+..+++++.. ...-++...++|-+|+++|.+..|+..+..++++ .-.
T Consensus 356 e~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL----~p~ 424 (539)
T KOG0548|consen 356 EK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKR------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL----DPN 424 (539)
T ss_pred hH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhc------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----Cch
Confidence 32 222333455566666666666666665541 1333555566666666666666666665555555 112
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 002424 784 LLKASATLTLAELWLSFGPNHAKMASNLIQQALP 817 (924)
Q Consensus 784 ~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp 817 (924)
... +..+=|.++..+-+. +.|.+.+++++.
T Consensus 425 ~~k--gy~RKg~al~~mk~y--dkAleay~eale 454 (539)
T KOG0548|consen 425 FIK--AYLRKGAALRAMKEY--DKALEAYQEALE 454 (539)
T ss_pred HHH--HHHHHHHHHHHHHHH--HHHHHHHHHHHh
Confidence 222 223334444444444 566655555543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.32 Score=57.41 Aligned_cols=228 Identities=16% Similarity=0.019 Sum_probs=153.2
Q ss_pred HHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHH
Q 002424 636 AVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHAR 715 (924)
Q Consensus 636 a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ 715 (924)
....+|+.|..+|..|... .+..++|+=.. ...+.+|+.++|..++++.+..|+ | -...++.+|.
T Consensus 629 ~en~e~eraR~llakar~~---sgTeRv~mKs~----~~er~ld~~eeA~rllEe~lk~fp-----~---f~Kl~lmlGQ 693 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSI---SGTERVWMKSA----NLERYLDNVEEALRLLEEALKSFP-----D---FHKLWLMLGQ 693 (913)
T ss_pred hccccHHHHHHHHHHHhcc---CCcchhhHHHh----HHHHHhhhHHHHHHHHHHHHHhCC-----c---hHHHHHHHhH
Confidence 4566799999988877753 44566666443 345678999999999999999776 4 5577888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 002424 716 TLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAE 795 (924)
Q Consensus 716 ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~ 795 (924)
++-.+++.+.|.+.+.+-+..|- .-+-.++.++.+--+.|++.+|...+.++.-.-=+ +..++. ..-.
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP------~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwl-----e~Ir 761 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCP------NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWL-----ESIR 761 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCC------CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHH-----HHHH
Confidence 99999999888888877665443 23567888888888999999999888777432211 111111 1222
Q ss_pred HHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHH------------------------HHHHhhhcCCCCCCCCCh
Q 002424 796 LWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI------------------------AEAKCLLSDPSFSVSQNP 851 (924)
Q Consensus 796 l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~------------------------~LAr~~la~~~~~~~g~~ 851 (924)
+-+..|.. ++|..++-++|.-+-..|-.+.++.-+. ..|+.... ....
T Consensus 762 ~ElR~gn~--~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~------e~k~ 833 (913)
T KOG0495|consen 762 MELRAGNK--EQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWS------EKKI 833 (913)
T ss_pred HHHHcCCH--HHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHH------HHHH
Confidence 33567877 8888888888888777777777665432 22222222 3446
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 852 EAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 852 ~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
++|++++.+|+..-...||. ....=..+...|..+.+.+....|.+.
T Consensus 834 ~kar~Wf~Ravk~d~d~GD~------wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 834 EKAREWFERAVKKDPDNGDA------WAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHccCCccchH------HHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 67888888887765555543 333444556667777777666666554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.045 Score=52.05 Aligned_cols=108 Identities=16% Similarity=0.086 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 788 (924)
.+-+.+..+...|+.+.|++.+.+++..|-+ ++.+++++|+.+.-.|+++.|+..+.+|++++-.- ..-...
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtacq 116 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPE------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTACQ 116 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhccc------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHHH
Confidence 3456778889999999999999999997643 37899999999999999999999999999998543 344556
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHH
Q 002424 789 ATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRAR 830 (924)
Q Consensus 789 al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~ 830 (924)
+.+.-|.++..+|.. +.|+.-++.+ -+.|+...+-+
T Consensus 117 a~vQRg~lyRl~g~d--d~AR~DFe~A----A~LGS~FAr~Q 152 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGND--DAARADFEAA----AQLGSKFAREQ 152 (175)
T ss_pred HHHHHHHHHHHhCch--HHHHHhHHHH----HHhCCHHHHHH
Confidence 666778888899999 9999988887 45677665554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.061 Score=60.13 Aligned_cols=192 Identities=18% Similarity=0.142 Sum_probs=132.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHH
Q 002424 632 IQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASL 711 (924)
Q Consensus 632 a~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~ 711 (924)
+.+++...+|..|+.+-+.+...=+. .....+++ +...+..|+..+|.-+++.+..+++ ...++..
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r--~~~alilK----G~lL~~~~R~~~A~IaFR~Aq~Lap--------~rL~~Y~ 372 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPR--NHEALILK----GRLLIALERHTQAVIAFRTAQMLAP--------YRLEIYR 372 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcc--cchHHHhc----cHHHHhccchHHHHHHHHHHHhcch--------hhHHHHH
Confidence 44667777888888777655533111 01112222 2456788899999988888877643 1567788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHH-HHHHhcCCh-hhhHHHHHHHHHHHHHhCCcHHHHHH
Q 002424 712 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLA-EIHKKSGNA-VLGIPYALASLSFCQLLNLDLLKASA 789 (924)
Q Consensus 712 ~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la-~i~~~~G~~-~~Al~~l~~AL~la~~~g~~~~~A~a 789 (924)
.+.+.+++.|++.||+-+.+++...... .+++|.+.| .|+.-.... ++|-..+..+|.+ .....-|
T Consensus 373 GL~hsYLA~~~~kEA~~~An~~~~~~~~------sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~------~P~Y~~A 440 (564)
T KOG1174|consen 373 GLFHSYLAQKRFKEANALANWTIRLFQN------SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI------NPIYTPA 440 (564)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHhhc------chhhhhhhcceeeccCchhHHHHHHHHHhhhcc------CCccHHH
Confidence 8888889999999999888888765432 377777775 555433222 5777777766654 2334456
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 790 TLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 790 l~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
.+.+|+++..-|.. ..++.+|+..|...- | ...+..||....| ...+.+|.+++..|+.+
T Consensus 441 V~~~AEL~~~Eg~~--~D~i~LLe~~L~~~~---D----~~LH~~Lgd~~~A------~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 441 VNLIAELCQVEGPT--KDIIKLLEKHLIIFP---D----VNLHNHLGDIMRA------QNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHhhCcc--chHHHHHHHHHhhcc---c----cHHHHHHHHHHHH------hhhHHHHHHHHHHHHhc
Confidence 67799999999998 999999999986632 3 2356678888888 67788888888888753
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.013 Score=63.28 Aligned_cols=99 Identities=19% Similarity=0.118 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.++-+-..|.=++..++|.+|+..+++++.+ ..-.+....++|.+|.+.|+++.|+..+..|+.+= .-
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD------p~ 147 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIEL------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID------PH 147 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC------hH
Confidence 5666777888899999999999999999874 23346678899999999999999999999888763 33
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
..++..+||.++..+|+. ++|.+.+..+|.+
T Consensus 148 yskay~RLG~A~~~~gk~--~~A~~aykKaLel 178 (304)
T KOG0553|consen 148 YSKAYGRLGLAYLALGKY--EEAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHHHHHHHccCcH--HHHHHHHHhhhcc
Confidence 457778899999999998 9999999988776
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.011 Score=49.38 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
+.+|..++..|+|++|++.+++++. .......++..+|.++...|++..|+..+.+++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3578899999999999999999886 23558899999999999999999999999998865
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.17 Score=60.68 Aligned_cols=175 Identities=12% Similarity=0.061 Sum_probs=112.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHH
Q 002424 632 IQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASL 711 (924)
Q Consensus 632 a~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~ 711 (924)
|.+....|=.+||..++++.+. +-.+. ..+-..|.|.+|.++.+.- |+-.--...+
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR---------~DLlN-----KlyQs~g~w~eA~eiAE~~----------DRiHLr~Tyy 862 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKR---------YDLLN-----KLYQSQGMWSEAFEIAETK----------DRIHLRNTYY 862 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH---------HHHHH-----HHHHhcccHHHHHHHHhhc----------cceehhhhHH
Confidence 3344455666777776665442 11122 5666899999998765532 4444557789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH----HHHHHHcccchhHH----------HHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 712 RHARTLLAANQFSEAAAVAHSL----FCMCYKFNLQVENA----------SVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 712 ~~a~ll~~~G~~~eAl~~l~~a----L~~~~~~gd~~~~a----------~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+.+..+-++||.+.|++.++.+ .+..+-..+-...+ ..+.--|+-.-..|+.+.|+..+..|-+..
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~f 942 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYF 942 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhh
Confidence 9999999999999999999865 22222222111111 134445666677888888888876554443
Q ss_pred HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 002424 778 QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDP 857 (924)
Q Consensus 778 ~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~ 857 (924)
.+..+++-+|.. ++|-++ +.+.||+ | |.+.|||.|-. .|+..+|+.+
T Consensus 943 --------------s~VrI~C~qGk~--~kAa~i-------A~esgd~---A-AcYhlaR~YEn------~g~v~~Av~F 989 (1416)
T KOG3617|consen 943 --------------SMVRIKCIQGKT--DKAARI-------AEESGDK---A-ACYHLARMYEN------DGDVVKAVKF 989 (1416)
T ss_pred --------------hheeeEeeccCc--hHHHHH-------HHhcccH---H-HHHHHHHHhhh------hHHHHHHHHH
Confidence 355566677877 666554 3456663 2 56778888888 7888888888
Q ss_pred HHHHHH
Q 002424 858 LRQASE 863 (924)
Q Consensus 858 L~~A~~ 863 (924)
+.+|.+
T Consensus 990 fTrAqa 995 (1416)
T KOG3617|consen 990 FTRAQA 995 (1416)
T ss_pred HHHHHH
Confidence 877654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.56 E-value=2.9 Score=50.68 Aligned_cols=106 Identities=22% Similarity=0.112 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHH-HHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI-LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~-~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
.+.+.--||.++..+++|.+|+.+.+.+.+-|+ ++.. ...+. ...+.-||-.+|...+.+.++++...-+..
T Consensus 512 ~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~---~N~~l~~~~~----~i~~~~~~~e~~l~t~~~~L~~we~~~~~q 584 (799)
T KOG4162|consen 512 SAKAWHLLALVLSAQKRLKEALDVVDAALEEFG---DNHVLMDGKI----HIELTFNDREEALDTCIHKLALWEAEYGVQ 584 (799)
T ss_pred cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh---hhhhhchhhh----hhhhhcccHHHHHHHHHHHHHHHHhhhhHh
Confidence 357778889999999999999999999888776 3221 11111 233457888888888888888776221110
Q ss_pred -cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 703 -MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 703 -~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
...+.......+.+.+..++..+|......+...
T Consensus 585 ~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 585 QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred hhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 0002233344455555555555565555555443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.26 Score=61.76 Aligned_cols=216 Identities=13% Similarity=-0.019 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC--
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG-- 700 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~-- 700 (924)
+...+.-.|+..+-..|++++|.++++.+.+.+|....-. .. .+ ..++..+++..|... .++.+++.-..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~y---y~--~G-~l~~q~~~~~~~~lv--~~l~~~~~~~~~~ 100 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISAL---YI--SG-ILSLSRRPLNDSNLL--NLIDSFSQNLKWA 100 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehH---HH--HH-HHHHhhcchhhhhhh--hhhhhcccccchh
Confidence 4457788889898899999999999998888877543311 00 11 244455555555433 33333221100
Q ss_pred ---------CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHH
Q 002424 701 ---------VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYAL 771 (924)
Q Consensus 701 ---------~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~ 771 (924)
.|-...-.+++.+|.++-.+|++++|...++++++. + ...+.++..+|..+... +.++|+.++.
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-----D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA-----D-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----C-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 011113368999999999999999999999999984 2 77799999999999999 9999999999
Q ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCCh
Q 002424 772 ASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNP 851 (924)
Q Consensus 772 ~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~ 851 (924)
+|+..--....- ..+=++|..+.... ..=.+.+-+++..++..-....-+..+.-|=.+|.. .+++
T Consensus 174 KAV~~~i~~kq~-------~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~------~~~~ 239 (906)
T PRK14720 174 KAIYRFIKKKQY-------VGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA------LEDW 239 (906)
T ss_pred HHHHHHHhhhcc-------hHHHHHHHHHHhcC-cccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhh------hhhh
Confidence 998885433211 11222333322220 122334445555555543333344445556688888 7899
Q ss_pred HHHHHHHHHHHHHHHh
Q 002424 852 EAVLDPLRQASEELQV 867 (924)
Q Consensus 852 ~~Al~~L~~A~~~f~~ 867 (924)
.+++..|+.+++.-.+
T Consensus 240 ~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 240 DEVIYILKKILEHDNK 255 (906)
T ss_pred hHHHHHHHHHHhcCCc
Confidence 9999999999987654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.21 Score=53.81 Aligned_cols=167 Identities=13% Similarity=-0.002 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
....+.-||+++-...+|.+|...+++.-..+|....-+.... .-....|.+++|...+..+.. .+
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~A------QSLY~A~i~ADALrV~~~~~D--------~~ 108 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQA------QSLYKACIYADALRVAFLLLD--------NP 108 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH------HHHHHhcccHHHHHHHHHhcC--------CH
Confidence 4556677788888888888888888877777775443221111 234467777777776665533 24
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
...-+++-..+-+....||+..+..++++.- ..+.+.+++..|.+..+.|+++.|+.-+..|+.. .|..
T Consensus 109 ~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--------~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv---sGyq 177 (459)
T KOG4340|consen 109 ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--------SENEADGQINLGCLLYKEGQYEAAVQKFQAALQV---SGYQ 177 (459)
T ss_pred HHHHHHHHHHHHHhcccccCcchHHHHHhcc--------CCCccchhccchheeeccccHHHHHHHHHHHHhh---cCCC
Confidence 5566777777777777788777777766531 1355788888999999999999999988888765 3566
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 784 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 784 ~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
.+.|. ++|..+.+-|+. ..|+++.-+++..-.
T Consensus 178 pllAY---niALaHy~~~qy--asALk~iSEIieRG~ 209 (459)
T KOG4340|consen 178 PLLAY---NLALAHYSSRQY--ASALKHISEIIERGI 209 (459)
T ss_pred chhHH---HHHHHHHhhhhH--HHHHHHHHHHHHhhh
Confidence 66554 366667778887 889998888876643
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.36 E-value=1.1 Score=57.27 Aligned_cols=236 Identities=15% Similarity=0.102 Sum_probs=174.3
Q ss_pred HHHHccCHHHHHHHHHHHHHH--hhccC-chHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHH
Q 002424 634 HLAVFKGYKEAFSALKIAEEK--FLSVS-KSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 710 (924)
Q Consensus 634 ~~a~~G~y~eA~~~L~~a~~~--f~~~~-~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~ 710 (924)
.+...++.+.|.++.++|+.. |++.. .-.+|+.-+++ ...-|.-+...+.++++-..+ | ...+.
T Consensus 1467 f~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNl----En~yG~eesl~kVFeRAcqyc------d---~~~V~ 1533 (1710)
T KOG1070|consen 1467 FHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNL----ENAYGTEESLKKVFERACQYC------D---AYTVH 1533 (1710)
T ss_pred HHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhH----HHhhCcHHHHHHHHHHHHHhc------c---hHHHH
Confidence 445678999999999999984 44322 23467766543 245567788888899987753 4 55777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASAT 790 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al 790 (924)
..+..+|...+.+++|-+++++++.-++ ....++...|...++..+.++|.+.+.+||.-.-+ ...-...
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk----~eHv~~I 1603 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK----QEHVEFI 1603 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch----hhhHHHH
Confidence 8888999999999999999999998543 34678899999999999999999999999988743 1223444
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcC
Q 002424 791 LTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLED 870 (924)
Q Consensus 791 ~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~ 870 (924)
--.|.+....|++ ++++.+++..+...-. +--.++.+.++-+. .|+...+...++++. .+..
T Consensus 1604 skfAqLEFk~GDa--eRGRtlfEgll~ayPK------RtDlW~VYid~eik------~~~~~~vR~lfeRvi----~l~l 1665 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDA--ERGRTLFEGLLSAYPK------RTDLWSVYIDMEIK------HGDIKYVRDLFERVI----ELKL 1665 (1710)
T ss_pred HHHHHHHhhcCCc--hhhHHHHHHHHhhCcc------chhHHHHHHHHHHc------cCCHHHHHHHHHHHH----hcCC
Confidence 5578888889999 9999999998765422 22355666677777 677788888888775 4667
Q ss_pred HHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhhhc
Q 002424 871 HELAAEAFYLIAIVFDKL-GRLAEREEAAALFKEYVLALEN 910 (924)
Q Consensus 871 ~~~~~~vl~~lA~l~~~l-Gd~~~r~~aa~~f~~l~~~~~~ 910 (924)
+.+.+.=++++=.-|... ||-...+..-++..++.....+
T Consensus 1666 ~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~~s 1706 (1710)
T KOG1070|consen 1666 SIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESIKS 1706 (1710)
T ss_pred ChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHhhh
Confidence 777777788777777654 7766666665666666655555
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.13 Score=59.54 Aligned_cols=235 Identities=13% Similarity=0.013 Sum_probs=144.7
Q ss_pred HHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhcc-CchHHHHHH
Q 002424 589 LLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSV-SKSRILLLK 667 (924)
Q Consensus 589 ~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~-~~~~~~~l~ 667 (924)
...+.--..+|........-.+...+|...-..+....-+.+.+-++...|.|.+.....+.+.+.-++. .+.....-+
T Consensus 221 k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~ 300 (539)
T KOG0548|consen 221 KEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKA 300 (539)
T ss_pred HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHH
Confidence 3344455556665555443333344443322223334556778888888888888888887766653321 121111111
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHH
Q 002424 668 LQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENA 747 (924)
Q Consensus 668 l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a 747 (924)
+...+..+..+|++..|...+.+++.-.+ . ..++-.....++++...+..... ++ ..+
T Consensus 301 ~~r~g~a~~k~~~~~~ai~~~~kaLte~R-----t-----------~~~ls~lk~~Ek~~k~~e~~a~~-----~p-e~A 358 (539)
T KOG0548|consen 301 LARLGNAYTKREDYEGAIKYYQKALTEHR-----T-----------PDLLSKLKEAEKALKEAERKAYI-----NP-EKA 358 (539)
T ss_pred HHHhhhhhhhHHhHHHHHHHHHHHhhhhc-----C-----------HHHHHHHHHHHHHHHHHHHHHhh-----Ch-hHH
Confidence 22222455567889999988888766322 1 33444455555555555443321 11 114
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHH
Q 002424 748 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLEL 827 (924)
Q Consensus 748 ~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~ 827 (924)
.-....|.-+.+.|+|..|+.++.+|+... .--+....+.|.+|..+|.. ..|+.-.+.++.. ...+.
T Consensus 359 ~e~r~kGne~Fk~gdy~~Av~~YteAIkr~------P~Da~lYsNRAac~~kL~~~--~~aL~Da~~~ieL----~p~~~ 426 (539)
T KOG0548|consen 359 EEEREKGNEAFKKGDYPEAVKHYTEAIKRD------PEDARLYSNRAACYLKLGEY--PEALKDAKKCIEL----DPNFI 426 (539)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC------CchhHHHHHHHHHHHHHhhH--HHHHHHHHHHHhc----CchHH
Confidence 455667999999999999999999977664 23346677788889999987 9999988887766 44444
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 828 RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 828 ~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
+|.. -=|.|+.+ ..++.+|++.+++|++.-
T Consensus 427 kgy~--RKg~al~~------mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 427 KAYL--RKGAALRA------MKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHH--HHHHHHHH------HHHHHHHHHHHHHHHhcC
Confidence 4444 44666776 677888888888887643
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.28 Score=58.42 Aligned_cols=231 Identities=17% Similarity=0.062 Sum_probs=124.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHH
Q 002424 629 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 708 (924)
Q Consensus 629 ~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~ 708 (924)
.-.+.++...|+|++|+++|+....... |...+.-. . ...++..|++++|...+..++.. .|+.. .
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~I~---Dk~~~~E~--r-A~ll~kLg~~~eA~~~y~~Li~r-------NPdn~-~ 73 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQIL---DKLAVLEK--R-AELLLKLGRKEEAEKIYRELIDR-------NPDNY-D 73 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhhCC---CHHHHHHH--H-HHHHHHcCCHHHHHHHHHHHHHH-------CCCcH-H
Confidence 3345567789999999999986554321 22112111 1 16778999999999999999985 22222 2
Q ss_pred HHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhh-HHHHHHHHHHHHHhCC
Q 002424 709 ASLRHARTLLAAN-----QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLG-IPYALASLSFCQLLNL 782 (924)
Q Consensus 709 a~~~~a~ll~~~G-----~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~A-l~~l~~AL~la~~~g~ 782 (924)
....+..++.... +.+.-.+.+++.... .....+-..+...+..-.++... -.++... -.-|-
T Consensus 74 Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~-------yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~----l~Kgv 142 (517)
T PF12569_consen 74 YYRGLEEALGLQLQLSDEDVEKLLELYDELAEK-------YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQ----LRKGV 142 (517)
T ss_pred HHHHHHHHHhhhcccccccHHHHHHHHHHHHHh-------CccccchhHhhcccCCHHHHHHHHHHHHHHH----HhcCC
Confidence 2333333331121 233334444433321 11111111111111111112111 2222222 23344
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH----hhC-----------CHHHHHHHHHHHHHhhhcCCCCCC
Q 002424 783 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL----GHG-----------GLELRARAFIAEAKCLLSDPSFSV 847 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl----~~g-----------d~~~~A~a~~~LAr~~la~~~~~~ 847 (924)
|..-..... ++. ++ +++ .++++++.... ..+ .+...--+++.||..+-.
T Consensus 143 PslF~~lk~----Ly~---d~--~K~-~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~------ 206 (517)
T PF12569_consen 143 PSLFSNLKP----LYK---DP--EKA-AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY------ 206 (517)
T ss_pred chHHHHHHH----HHc---Ch--hHH-HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH------
Confidence 443333322 221 22 222 22333333322 211 122233467888888887
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 002424 848 SQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVL 906 (924)
Q Consensus 848 ~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~ 906 (924)
.|++++|++++++|++.= .-.-+.+..+|+++...|+..+|.++....|.+..
T Consensus 207 ~g~~~~Al~~Id~aI~ht------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~ 259 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHT------PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL 259 (517)
T ss_pred hCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh
Confidence 899999999999998752 33457889999999999999999998888887754
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.024 Score=62.59 Aligned_cols=225 Identities=19% Similarity=0.187 Sum_probs=133.7
Q ss_pred ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHc-CCHHHHHHHHHHHhhhhhcc
Q 002424 620 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHR-GHLKLAQKVCDELGVMASSV 698 (924)
Q Consensus 620 ~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~-G~~~~A~~~l~~ll~l~~~~ 698 (924)
+.+.......-+++.+..+|.|+.++.-+.. ........+++ . ..++.. ++-..+ +..+..+....
T Consensus 30 ~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-------~~~~~l~av~~--l-a~y~~~~~~~e~~---l~~l~~~~~~~ 96 (290)
T PF04733_consen 30 SPENKLERDFYQYRSYIALGQYDSVLSEIKK-------SSSPELQAVRL--L-AEYLSSPSDKESA---LEELKELLADQ 96 (290)
T ss_dssp TCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T-------TSSCCCHHHHH--H-HHHHCTSTTHHCH---HHHHHHCCCTS
T ss_pred CchhHHHHHHHHHHHHHHcCChhHHHHHhcc-------CCChhHHHHHH--H-HHHHhCccchHHH---HHHHHHHHHhc
Confidence 3445555666677788889998877554431 11111111111 0 111222 233333 33333322211
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Q 002424 699 TGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778 (924)
Q Consensus 699 ~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~ 778 (924)
. + ..-..+....|.++...|++++|++.+.+. ....++.+..+++++.||++.|...+... +
T Consensus 97 ~--~-~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~----~ 158 (290)
T PF04733_consen 97 A--G-ESNEIVQLLAATILFHEGDYEEALKLLHKG-----------GSLELLALAVQILLKMNRPDLAEKELKNM----Q 158 (290)
T ss_dssp ------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH----H
T ss_pred c--c-cccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----------CcccHHHHHHHHHHHcCCHHHHHHHHHHH----H
Confidence 1 1 112345566777788889999999888642 23566667888999999999998777554 3
Q ss_pred HhCCcHHHHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 002424 779 LLNLDLLKASATLTLAELWLS--FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLD 856 (924)
Q Consensus 779 ~~g~~~~~A~al~~La~l~~~--lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~ 856 (924)
+..++ .++..|+..|.. .|...+++|...+++.... +|. ....++.+|.|++. .|++++|..
T Consensus 159 ~~~eD----~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~---~~~---t~~~lng~A~~~l~------~~~~~eAe~ 222 (290)
T PF04733_consen 159 QIDED----SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK---FGS---TPKLLNGLAVCHLQ------LGHYEEAEE 222 (290)
T ss_dssp CCSCC----HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC---S-----SHHHHHHHHHHHHH------CT-HHHHHH
T ss_pred hcCCc----HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc---cCC---CHHHHHHHHHHHHH------hCCHHHHHH
Confidence 33444 345557776644 6653448999999996432 222 34568889999999 899999999
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCH-HHHHHH
Q 002424 857 PLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRL-AEREEA 897 (924)
Q Consensus 857 ~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~-~~r~~a 897 (924)
.|++|+. .-....+++..++.+...+|.. +..+++
T Consensus 223 ~L~~al~------~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 223 LLEEALE------KDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp HHHHHCC------C-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHH------hccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 9999864 2234567899999999999988 444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.017 Score=62.32 Aligned_cols=91 Identities=11% Similarity=0.008 Sum_probs=76.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
-.++..++|.+|...+.+++.+ ||. -+..+.+++..|.++|.|+.|++-++.++.+ ...-.+++..
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l-------~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------Dp~yskay~R 154 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL-------DPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI------DPHYSKAYGR 154 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-------CCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc------ChHHHHHHHH
Confidence 5778899999999999999987 322 2466788999999999999999999998874 2233678889
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+|.+|...|+++.|+..+.+||++=
T Consensus 155 LG~A~~~~gk~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 155 LGLAYLALGKYEEAIEAYKKALELD 179 (304)
T ss_pred HHHHHHccCcHHHHHHHHHhhhccC
Confidence 9999999999999999999998873
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.046 Score=54.51 Aligned_cols=114 Identities=13% Similarity=0.062 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
..+..+..|.-....|++++|...+.-+.. ...++.+-++.+|.++...|+++.|+..+..|..+.. .++
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~------~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp-- 105 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCI------YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDY-- 105 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCC--
Confidence 678899999999999999999999985433 2345577889999999999999999999998888764 333
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEA 836 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LA 836 (924)
+...+.|..++.+|+. +.|+..++.++.. ..+..++.+|...|-
T Consensus 106 --~p~f~agqC~l~l~~~--~~A~~~f~~a~~~---~~~~~l~~~A~~~L~ 149 (165)
T PRK15331 106 --RPVFFTGQCQLLMRKA--AKARQCFELVNER---TEDESLRAKALVYLE 149 (165)
T ss_pred --CccchHHHHHHHhCCH--HHHHHHHHHHHhC---cchHHHHHHHHHHHH
Confidence 2267799999999999 9999999999883 456666666644443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.05 Score=58.38 Aligned_cols=153 Identities=13% Similarity=0.077 Sum_probs=102.3
Q ss_pred HHHHhhcCCCC-ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHH
Q 002424 609 LIYATCFSDGS-SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKV 687 (924)
Q Consensus 609 ~~~~~~~~~~~-~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~ 687 (924)
+....||..-+ ..-....-..--|+.+-..|.|.+|++++...... + .-+-..++++- ......||+..++.+
T Consensus 61 ~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~-~---~L~~~~lqLqa--AIkYse~Dl~g~rsL 134 (459)
T KOG4340|consen 61 ALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN-P---ALHSRVLQLQA--AIKYSEGDLPGSRSL 134 (459)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC-H---HHHHHHHHHHH--HHhcccccCcchHHH
Confidence 34456766521 12222333344466677789999999887743321 0 00112334332 345679999999999
Q ss_pred HHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhH
Q 002424 688 CDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGI 767 (924)
Q Consensus 688 l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al 767 (924)
++|+.. ++.+.+..+.|-++...|+|++|+..++.+++. .|...+ +-..+|.+|.+.|++..|+
T Consensus 135 veQlp~----------en~Ad~~in~gCllykegqyEaAvqkFqaAlqv---sGyqpl---lAYniALaHy~~~qyasAL 198 (459)
T KOG4340|consen 135 VEQLPS----------ENEADGQINLGCLLYKEGQYEAAVQKFQAALQV---SGYQPL---LAYNLALAHYSSRQYASAL 198 (459)
T ss_pred HHhccC----------CCccchhccchheeeccccHHHHHHHHHHHHhh---cCCCch---hHHHHHHHHHhhhhHHHHH
Confidence 988743 125677899999999999999999999999874 244433 3457889999999999999
Q ss_pred HHHHHHHHHHHHhCCc
Q 002424 768 PYALASLSFCQLLNLD 783 (924)
Q Consensus 768 ~~l~~AL~la~~~g~~ 783 (924)
.+..+-+...-+.+-.
T Consensus 199 k~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPE 214 (459)
T ss_pred HHHHHHHHhhhhcCCc
Confidence 9987776665444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.048 Score=68.07 Aligned_cols=154 Identities=12% Similarity=-0.012 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH--------
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC-------- 777 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la-------- 777 (924)
.+.++..++..+...|++++|.+.++.+++. ....++++..+|.++...+++..+... .++.+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 7889999999999999999999999987763 455578888899999999998777544 444443
Q ss_pred -----HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChH
Q 002424 778 -----QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPE 852 (924)
Q Consensus 778 -----~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~ 852 (924)
...++-...-.|+..||.+|-.+|.. ++|...++++|..= ..-+.+++.+|..+.- . +++
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~--~ka~~~yer~L~~D------~~n~~aLNn~AY~~ae------~-dL~ 166 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNEN--KKLKGVWERLVKAD------RDNPEIVKKLATSYEE------E-DKE 166 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcC------cccHHHHHHHHHHHHH------h-hHH
Confidence 33344444457999999999999999 99999999998764 4667899999999888 6 999
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 002424 853 AVLDPLRQASEELQVLEDHELAAEAFYLIA 882 (924)
Q Consensus 853 ~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA 882 (924)
+|+.++.+|+..|-.-+......++..++-
T Consensus 167 KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~ 196 (906)
T PRK14720 167 KAITYLKKAIYRFIKKKQYVGIEEIWSKLV 196 (906)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 999999999999887777777666555443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.049 Score=57.81 Aligned_cols=121 Identities=14% Similarity=0.053 Sum_probs=94.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHH
Q 002424 631 LIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 710 (924)
Q Consensus 631 La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~ 710 (924)
+|..+...|+|.+|...+.++...-|. +.+.|... +-.+...|++++|+..+.+++.++.. ...+.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~--d~~~~~~l----gaaldq~Gr~~~Ar~ay~qAl~L~~~--------~p~~~ 171 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPT--DWEAWNLL----GAALDQLGRFDEARRAYRQALELAPN--------EPSIA 171 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCC--ChhhhhHH----HHHHHHccChhHHHHHHHHHHHhccC--------Cchhh
Confidence 888899999999999999988866442 32333322 14667899999999999999998542 45788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYAL 771 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~ 771 (924)
.+++..++-.||++.|..++..+-. ......++..+++.+.-..|++..|.....
T Consensus 172 nNlgms~~L~gd~~~A~~lll~a~l------~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 172 NNLGMSLLLRGDLEDAETLLLPAYL------SPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHh------CCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 9999999999999999999987744 233446777888889999999988876553
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.064 Score=58.36 Aligned_cols=93 Identities=9% Similarity=0.005 Sum_probs=76.5
Q ss_pred HHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Q 002424 676 LHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAE 755 (924)
Q Consensus 676 l~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~ 755 (924)
+..|+|++|...++.++..++. ..-...+++.+|.++...|++++|+..++.++.. ..+......++..+|.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~-----s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~---yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPD-----STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN---YPKSPKAADAMFKVGV 225 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCcchhHHHHHHHH
Confidence 4568999999999999886552 2235688999999999999999999999988763 3455677889999999
Q ss_pred HHHhcCChhhhHHHHHHHHHH
Q 002424 756 IHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 756 i~~~~G~~~~Al~~l~~AL~l 776 (924)
++...|++..|...+.+.+..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999866543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=96.18 E-value=1.5 Score=49.11 Aligned_cols=225 Identities=7% Similarity=-0.139 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcC-CHHHHHHHHHHHhhhhhccCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG-HLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G-~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
+...++..+-.++...+++++|+.....+.+.-|..- ..|.-+- ......| ++.++...+.+++...+
T Consensus 35 ~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~y--taW~~R~----~iL~~L~~~l~eeL~~~~~~i~~np----- 103 (320)
T PLN02789 35 EFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNY--TVWHFRR----LCLEALDADLEEELDFAEDVAEDNP----- 103 (320)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH--HHHHHHH----HHHHHcchhHHHHHHHHHHHHHHCC-----
Confidence 4444554454556778899999999999887755322 2344331 1223446 68999999999987522
Q ss_pred CcchHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 702 DMDLKTEASLRHARTLLAANQF--SEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~--~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
. ...++..++.++...|+. .++++.++.++.. ......++..++.+....|+++.|+..+.+++.+--.
T Consensus 104 --k-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~ 174 (320)
T PLN02789 104 --K-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSL------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR 174 (320)
T ss_pred --c-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence 2 456788888888888874 6788888887763 2345778999999999999999999999999887422
Q ss_pred hCCcHHHHHHHHHHHHHHHHc---CCC--hHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 002424 780 LNLDLLKASATLTLAELWLSF---GPN--HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAV 854 (924)
Q Consensus 780 ~g~~~~~A~al~~La~l~~~l---G~~--~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~A 854 (924)
+ ..|..+.+.+...+ |.. ..++++.....++...-...+. +..++-++.... ...+...+|
T Consensus 175 N------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~Sa------W~Yl~~ll~~~~--~~l~~~~~~ 240 (320)
T PLN02789 175 N------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESP------WRYLRGLFKDDK--EALVSDPEV 240 (320)
T ss_pred c------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCH------HHHHHHHHhcCC--cccccchhH
Confidence 2 23444455554444 322 1246788877877776555553 333343333311 112444557
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 002424 855 LDPLRQASEELQVLEDHELAAEAFYLIAIVFDK 887 (924)
Q Consensus 855 l~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~ 887 (924)
++...++.. ..... ..++..|+.+|..
T Consensus 241 ~~~~~~~~~--~~~~s----~~al~~l~d~~~~ 267 (320)
T PLN02789 241 SSVCLEVLS--KDSNH----VFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhhc--ccCCc----HHHHHHHHHHHHh
Confidence 776666554 11222 2356666666664
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.096 Score=56.99 Aligned_cols=103 Identities=11% Similarity=-0.013 Sum_probs=78.9
Q ss_pred HHHHHHHHHH-HHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 626 LAHVKLIQHL-AVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 626 ~a~~~La~~~-a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
......|..+ ...|+|++|...|+.....+|......-....+ +..++..|++.+|...+..+...++ |..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~L---G~~y~~~g~~~~A~~~f~~vv~~yP-----~s~ 214 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWL---GQLNYNKGKKDDAAYYFASVVKNYP-----KSP 214 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHHCC-----CCc
Confidence 3445556655 457999999999999999998654311111111 1577899999999999999998655 223
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
-...+++.+|.++...|++++|.+.+++++..
T Consensus 215 ~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 215 KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 37789999999999999999999999988874
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.11 Score=59.77 Aligned_cols=116 Identities=18% Similarity=0.089 Sum_probs=89.7
Q ss_pred HHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHH
Q 002424 633 QHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLR 712 (924)
Q Consensus 633 ~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~ 712 (924)
..+...++|++|..++++..+..|+ ....+. ..++..++-.+|.+++.+++...+ . ..+.+..
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe----v~~~LA-----~v~l~~~~E~~AI~ll~~aL~~~p----~----d~~LL~~ 239 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE----VAVLLA-----RVYLLMNEEVEAIRLLNEALKENP----Q----DSELLNL 239 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc----HHHHHH-----HHHHhcCcHHHHHHHHHHHHHhCC----C----CHHHHHH
Confidence 3345578999999999987776542 111122 566678899999999999886321 1 2788889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHH
Q 002424 713 HARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYAL 771 (924)
Q Consensus 713 ~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~ 771 (924)
.+..++..|+++.|++.++++... .....+++..+|.+|...|+++.|+-.+.
T Consensus 240 Qa~fLl~k~~~~lAL~iAk~av~l------sP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 240 QAEFLLSKKKYELALEIAKKAVEL------SPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh------CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 999999999999999999988763 45668899999999999999999985554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.013 Score=43.08 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcCCh
Q 002424 373 ALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSND 407 (924)
Q Consensus 373 all~la~~h~~fg~~~~A~~~l~Eai~~Aqe~~D~ 407 (924)
|+.+||.+|...|++++|+.++++++.++++..|.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~~ 35 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPEDR 35 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-H
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCC
Confidence 68899999999999999999999999999887764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.13 Score=59.00 Aligned_cols=118 Identities=19% Similarity=0.162 Sum_probs=97.3
Q ss_pred HHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Q 002424 676 LHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAE 755 (924)
Q Consensus 676 l~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~ 755 (924)
...++++.|..+++++... || ++...++.+++..++..+|++.+.+++.... .....|...|.
T Consensus 180 ~~t~~~~~ai~lle~L~~~-------~p----ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p------~d~~LL~~Qa~ 242 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRER-------DP----EVAVLLARVYLLMNEEVEAIRLLNEALKENP------QDSELLNLQAE 242 (395)
T ss_pred hhcccHHHHHHHHHHHHhc-------CC----cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC------CCHHHHHHHHH
Confidence 4578999999999999773 44 3556689999999999999999999996322 12888999999
Q ss_pred HHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 756 IHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 756 i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
.+...|+++.|+..+.+|..++= ..-.....||.+|..+|+. +.|+..++ ++|..
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP------~~f~~W~~La~~Yi~~~d~--e~ALlaLN-s~Pm~ 297 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSP------SEFETWYQLAECYIQLGDF--ENALLALN-SCPML 297 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHHHHhcCCH--HHHHHHHh-cCcCC
Confidence 99999999999999999988872 2346778899999999998 99998888 56776
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.037 Score=61.17 Aligned_cols=146 Identities=19% Similarity=0.119 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
...-.|.++...|++++|++.+... +.-....+.. ..++..||.+.|...+..+... . .| .
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~V----qi~L~~~R~dlA~k~l~~~~~~----~-eD---~ 164 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAV----QILLKMNRPDLAEKELKNMQQI----D-ED---S 164 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHH----HHHHHTT-HHHHHHHHHHHHCC----S-CC---H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHH----HHHHHcCCHHHHHHHHHHHHhc----C-Cc---H
Confidence 3444566677789999998887632 1111122222 5778999999999999888664 1 14 5
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 707 TEASLRHARTLLAAN--QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 707 a~a~~~~a~ll~~~G--~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
..+.+..+++.+..| .+.+|.-.++++... . ......+..+|.++...|++++|...+.+|+..- .
T Consensus 165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~---~---~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~------~ 232 (290)
T PF04733_consen 165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK---F---GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD------P 232 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC---S-----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-------C
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc---c---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc------c
Confidence 677777888888888 589999999886331 1 1235678899999999999999999999887532 1
Q ss_pred HHHHHHHHHHHHHHHcCCC
Q 002424 785 LKASATLTLAELWLSFGPN 803 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~ 803 (924)
....++.+++.+...+|.+
T Consensus 233 ~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-T
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 2345677788888889997
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.036 Score=46.14 Aligned_cols=56 Identities=18% Similarity=0.136 Sum_probs=48.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
..++..|++++|..++++++... |. ...+++.+|.++..+|++++|+..+++++..
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-------P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-------PD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-------TT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57789999999999999998852 22 7899999999999999999999999998874
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.14 Score=61.28 Aligned_cols=137 Identities=13% Similarity=-0.005 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChh----hhHHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQ---FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAV----LGIPYALASLSFCQ 778 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~---~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~----~Al~~l~~AL~la~ 778 (924)
.+.-.+..|.-++..++ +..|+++++++++. ......+.+ .++.+|.....+. ..+..+.+++..+.
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l----dP~~a~a~A--~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS----EPDFTYAQA--EKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh----CCCcHHHHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 56666777777666655 77899999998874 222333333 3344443322221 22334444444433
Q ss_pred HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHH
Q 002424 779 LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPL 858 (924)
Q Consensus 779 ~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L 858 (924)
........+.+...+|.++...|++ ++|...+++++.+- . -+.+|..+|+++.. .|++++|++++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~--~~A~~~l~rAl~L~----p---s~~a~~~lG~~~~~------~G~~~eA~~~~ 476 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKT--DEAYQAINKAIDLE----M---SWLNYVLLGKVYEL------KGDNRLAADAY 476 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcC----C---CHHHHHHHHHHHHH------cCCHHHHHHHH
Confidence 3222222345666667777778887 99999999998774 1 25799999999999 89999999999
Q ss_pred HHHHH
Q 002424 859 RQASE 863 (924)
Q Consensus 859 ~~A~~ 863 (924)
++|+.
T Consensus 477 ~~A~~ 481 (517)
T PRK10153 477 STAFN 481 (517)
T ss_pred HHHHh
Confidence 99975
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.055 Score=60.77 Aligned_cols=66 Identities=18% Similarity=0.135 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
...+.++++.+++.+++|.+|+...+.+|+ ....+..+|..+|+++...|+++.|+..+.+++.+-
T Consensus 256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe------~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 256 KLACHLNLAACYLKLKEYKEAIESCNKVLE------LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHh------cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 557889999999999999999999999987 356678999999999999999999999999999885
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=1.6 Score=46.77 Aligned_cols=174 Identities=16% Similarity=0.042 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
-+..+.+-|......|+|++|...++.+..++|-....+-..+-+. ..+...|++++|...+++-..+++... +
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~---yA~Yk~~~y~~A~~~~drFi~lyP~~~--n- 106 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLA---YAYYKNGEYDLALAYIDRFIRLYPTHP--N- 106 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHH---HHHHhcccHHHHHHHHHHHHHhCCCCC--C-
Confidence 3566788888899999999999999999988875544432222211 577899999999999999999988665 3
Q ss_pred chHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHcccchhH--------------HHHHHHHHHHHHhcCChh
Q 002424 704 DLKTEASLRHARTLL-----AANQFSEAAAVAHSLFCMCYKFNLQVEN--------------ASVLLLLAEIHKKSGNAV 764 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~-----~~G~~~eAl~~l~~aL~~~~~~gd~~~~--------------a~al~~la~i~~~~G~~~ 764 (924)
...+.+..|..+. ...|...+.+.+...-....+..+.+-. +.--+..|..|.+.|.+.
T Consensus 107 --~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 107 --ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred --hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 5578888887764 3445566666555554444444433322 223567788899999999
Q ss_pred hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHH
Q 002424 765 LGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASN 810 (924)
Q Consensus 765 ~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~ 810 (924)
.|...+++.++- +-.....-.++-.|.+.+.++|.. ++|-+
T Consensus 185 AA~nR~~~v~e~---y~~t~~~~eaL~~l~eaY~~lgl~--~~a~~ 225 (254)
T COG4105 185 AAINRFEEVLEN---YPDTSAVREALARLEEAYYALGLT--DEAKK 225 (254)
T ss_pred HHHHHHHHHHhc---cccccchHHHHHHHHHHHHHhCCh--HHHHH
Confidence 988888776654 334444556677788888888887 55544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.034 Score=46.64 Aligned_cols=52 Identities=25% Similarity=0.289 Sum_probs=43.8
Q ss_pred HHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002424 676 LHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 676 l~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~ 735 (924)
+..|+|++|..++++++...+ + ...+.+.++.+++..|++++|.+.+++++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-----~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-----D---NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-----T---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCC-----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578999999999999988633 1 467888999999999999999999998876
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.035 Score=46.74 Aligned_cols=64 Identities=22% Similarity=0.223 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHhH
Q 002424 747 ASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFG-PNHAKMASNLIQQALPL 818 (924)
Q Consensus 747 a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG-~~~~~~Al~lLe~aLp~ 818 (924)
+.++..+|.++...|++.+|+..+.+|+.+.- ..+.+...+|.++..+| .. ++|+..++.++.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p------~~~~~~~~~g~~~~~~~~~~--~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP------NNAEAYYNLGLAYMKLGKDY--EEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST------THHHHHHHHHHHHHHTTTHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHhCccH--HHHHHHHHHHHHc
Confidence 67889999999999999999999999999842 24568899999999999 56 9999999998754
|
... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.21 Score=51.07 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=91.8
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhh
Q 002424 615 FSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVM 694 (924)
Q Consensus 615 ~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l 694 (924)
+.++..-++...++..+|.++...|++++|++.+.++.+.-. +..+..-+++++. +..+..|+|..+..++.++..+
T Consensus 26 ~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~--~~~~~id~~l~~i-rv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 26 AKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT--SPGHKIDMCLNVI-RVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC--CHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHH
Confidence 445556778889999999999999999999999998776422 2222233344443 7889999999999999999998
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 695 ASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 695 ~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
....+ |.+.........|...+..|+|.+|.+.+-++...
T Consensus 103 ~~~~~--d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 103 IEKGG--DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred Hhccc--hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 66544 67777778888899999999999999998877653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.68 Score=46.99 Aligned_cols=100 Identities=16% Similarity=0.135 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
.-.++++..+.+.|++.||...+++++. |.--+...+++.+|+.....|++..|...+..-.+ ++-.....
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e----~~pa~r~p 160 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME----YNPAFRSP 160 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh----cCCccCCC
Confidence 4467899999999999999999999988 77777788999999999999999999887764433 33344445
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 788 SATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 788 ~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
...+.+|.++...|.+ +.|..-++.++.-
T Consensus 161 d~~Ll~aR~laa~g~~--a~Aesafe~a~~~ 189 (251)
T COG4700 161 DGHLLFARTLAAQGKY--ADAESAFEVAISY 189 (251)
T ss_pred CchHHHHHHHHhcCCc--hhHHHHHHHHHHh
Confidence 5667799999999999 8888887777544
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.60 E-value=3 Score=46.13 Aligned_cols=210 Identities=10% Similarity=0.010 Sum_probs=140.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHAR-TLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLL 751 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~-ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~ 751 (924)
..+...|+..+-..++.++...+..++ -+. .+....-+.+ .+.--+..+.-++++.++++.+.+......+-..-.
T Consensus 56 ~ll~~~~~~~~lr~li~~~Rpf~~~v~--Kak-aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Lea 132 (411)
T KOG1463|consen 56 DLLAKEGDAEELRDLITSLRPFLSSVS--KAK-AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEA 132 (411)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHhh--hHH-HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 566677777777777777666555444 111 1111111122 222334555667777777777766665566666677
Q ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH-hhCCHHHHHH
Q 002424 752 LLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL-GHGGLELRAR 830 (924)
Q Consensus 752 ~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl-~~gd~~~~A~ 830 (924)
.+..+|...++|..|+.....-+.--++..+......+.+.=..++..+... .+|..-|..+-...- -.-.+.++|.
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl--~KakasLTsART~AnaiYcpPqlQa~ 210 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNL--PKAKASLTSARTTANAIYCPPQLQAT 210 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcc--hhHHHHHHHHHHhhcccccCHHHHHH
Confidence 7888899999999999888888777788888777666666667777777776 777776666544332 1245677777
Q ss_pred HHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHH
Q 002424 831 AFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAE 893 (924)
Q Consensus 831 a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~ 893 (924)
.-+.-|-.|.+ ..++..|-.|+=+|++.|..++++...+.++-.+-..--.++.+++
T Consensus 211 lDLqSGIlha~------ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~dd 267 (411)
T KOG1463|consen 211 LDLQSGILHAA------EKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDD 267 (411)
T ss_pred HHHhccceeec------ccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHH
Confidence 76666666666 5778889999999999999999988888777655444444444444
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.49 Score=48.40 Aligned_cols=92 Identities=20% Similarity=0.112 Sum_probs=80.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
......|++++|...+.+.+.. ..|......+..|+++++...|.+++|+..++.. .+.-+..++.-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~-----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~-------~~~~w~~~~~el 164 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ-----TKDENLKALAALRLARVQLQQKKADAALKTLDTI-------KEESWAAIVAEL 164 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc-----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-------ccccHHHHHHHH
Confidence 6788999999999999999874 3377788999999999999999999999988854 455677888899
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
+|.++...|+-..|+.-+.+|+..
T Consensus 165 rGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 165 RGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hhhHHHHcCchHHHHHHHHHHHHc
Confidence 999999999999999999988876
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.14 Score=61.04 Aligned_cols=124 Identities=14% Similarity=0.031 Sum_probs=82.7
Q ss_pred cCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHHHHHcccchhHHHHHHHH
Q 002424 678 RGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFS----EAAAVAHSLFCMCYKFNLQVENASVLLLL 753 (924)
Q Consensus 678 ~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~----eAl~~l~~aL~~~~~~gd~~~~a~al~~l 753 (924)
.+++..|..+++++..+ ||. -+.++..++.++.....+. ..+..+.+.+.............+++..+
T Consensus 355 ~~~~~~A~~lle~Ai~l-------dP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~al 426 (517)
T PRK10153 355 AKSLNKASDLLEEILKS-------EPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEIL 426 (517)
T ss_pred HHHHHHHHHHHHHHHHh-------CCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHH
Confidence 34488899999999986 333 2344444444443332222 22333333333222221122224677788
Q ss_pred HHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 754 AEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 754 a~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
|.++...|++++|...+.+|+.+.. . +.+...+|.++...|++ ++|.+.+++++.+
T Consensus 427 a~~~~~~g~~~~A~~~l~rAl~L~p-----s--~~a~~~lG~~~~~~G~~--~eA~~~~~~A~~L 482 (517)
T PRK10153 427 AVQALVKGKTDEAYQAINKAIDLEM-----S--WLNYVLLGKVYELKGDN--RLAADAYSTAFNL 482 (517)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-----C--HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhc
Confidence 8889999999999999999998862 1 56888899999999999 9999999999754
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.8 Score=46.65 Aligned_cols=181 Identities=13% Similarity=0.071 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc------------hhHHHHHHHHHHHHHhcCCh------------
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ------------VENASVLLLLAEIHKKSGNA------------ 763 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~------------~~~a~al~~la~i~~~~G~~------------ 763 (924)
..-+.+..+++..|+..+|++.++.-+..+...-++ -|.++=...+|++......+
T Consensus 11 ~i~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~ 90 (247)
T PF11817_consen 11 FIAFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGF 90 (247)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcch
Confidence 344567889999999999999999888877654333 34555566777777665521
Q ss_pred --hhhHHHHHHHHHHHHHhC---C-------------------cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 764 --VLGIPYALASLSFCQLLN---L-------------------DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 764 --~~Al~~l~~AL~la~~~g---~-------------------~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
..|-.++.+--..+.... + ....-.... +... ...|..|-...+++|+.++...
T Consensus 91 yy~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~e~~~~hs~~iI~lL~~A~~~f 168 (247)
T PF11817_consen 91 YYQIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYP-LLQS-EEKGVDHSKLIIELLEKAYEQF 168 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHH-hhhc-cccccchHHHHHHHHHHHHHHH
Confidence 122222222222222221 0 000001111 0000 1123346688999999999999
Q ss_pred HhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 820 LGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 820 l~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
...+...........+|+-|.. .|++.+|+.+|+.+...|++=+|..-...++..+......+|+.+.--.
T Consensus 169 ~~~~~~R~~~~l~~~~A~ey~~------~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 169 KKYGQNRMASYLSLEMAEEYFR------LGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHhccchHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999999999999 8999999999999999999999999999999999999999999987433
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.87 Score=48.73 Aligned_cols=147 Identities=16% Similarity=0.064 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
.....-+.+++.-|++++|++.+..... ..+.-+.-+|+++..+.+-|...+.+...+...
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~-----------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided-------- 169 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGEN-----------LEAAALNVQILLKMHRFDLAEKELKKMQQIDED-------- 169 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccch-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--------
Confidence 4566778888999999999998875322 445556677888999999999888888888864
Q ss_pred HHHHHHHHHHHHc--CCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 788 SATLTLAELWLSF--GPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 788 ~al~~La~l~~~l--G~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
.++..||..|..+ |-.+.+.|.-++++--.. ..-.-..++..|.|++. .|++++|...|+.|+.-.
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k------~~~T~~llnG~Av~~l~------~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK------TPPTPLLLNGQAVCHLQ------LGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc------cCCChHHHccHHHHHHH------hcCHHHHHHHHHHHHhcc
Confidence 4556689988654 444556677776664221 22233466778899999 999999999999998855
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhcCCH
Q 002424 866 QVLEDHELAAEAFYLIAIVFDKLGRL 891 (924)
Q Consensus 866 ~~l~~~~~~~~vl~~lA~l~~~lGd~ 891 (924)
-+. .+++..+-..-..+|..
T Consensus 238 ~~d------petL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 238 AKD------PETLANLIVLALHLGKD 257 (299)
T ss_pred CCC------HHHHHHHHHHHHHhCCC
Confidence 333 56777777777777765
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.35 Score=47.23 Aligned_cols=90 Identities=12% Similarity=0.060 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
...+.+-|......|+|++|.+.|+....+||.-....-.-+.+ + ..++..|+|.+|...+++...+.+....
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l--~-yayy~~~~y~~A~a~~~rFirLhP~hp~---- 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDL--A-YAYYKQGDYEEAIAAYDRFIRLHPTHPN---- 82 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHH--H-HHHHHccCHHHHHHHHHHHHHhCCCCCC----
Confidence 45667888888999999999999999999998554433222222 1 6889999999999999999999776553
Q ss_pred hHHHHHHHHHHHHHHcCC
Q 002424 705 LKTEASLRHARTLLAANQ 722 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~ 722 (924)
...+++..|.....+.+
T Consensus 83 -vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 83 -VDYAYYMRGLSYYEQDE 99 (142)
T ss_pred -ccHHHHHHHHHHHHHhh
Confidence 45889999988887765
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.41 E-value=3.2 Score=49.44 Aligned_cols=229 Identities=14% Similarity=0.030 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
++...+.-....+.|...+...+..+..|++++++- .+.+...--.|+-.+|...++..+.. |+. .
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgesl------AmkGL~L~~lg~~~ea~~~vr~glr~-------d~~-S 74 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESL------AMKGLTLNCLGKKEEAYELVRLGLRN-------DLK-S 74 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhH------HhccchhhcccchHHHHHHHHHHhcc-------Ccc-c
Confidence 445556666678899999999999999999998843 11112334689999999999887662 322 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 786 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 786 (924)
..++.-.|.+...-.+|++|+.++..++.+ ...+...+.-++.+..+.|+++-.+..=.+-+.+-- ..
T Consensus 75 ~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~------~~ 142 (700)
T KOG1156|consen 75 HVCWHVLGLLQRSDKKYDEAIKCYRNALKI------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP------SQ 142 (700)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh------hh
Confidence 578889999999999999999999999874 234466777788888888888655443333333321 11
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHH--HhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 787 ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEA--KCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 787 A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LA--r~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
-.....+|-.+.-+|.. ..|..++++-.-...+.-+.....+.-..|= ..+.. .|...+|++.+..=...
T Consensus 143 ra~w~~~Avs~~L~g~y--~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E------~g~~q~ale~L~~~e~~ 214 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEY--KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE------AGSLQKALEHLLDNEKQ 214 (700)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH------cccHHHHHHHHHhhhhH
Confidence 12344566666667877 8999999888777765556555555444333 23333 56677777776643332
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhcCCHHHHH
Q 002424 865 LQVLEDHELAAEAFYLIAIVFDKLGRLAERE 895 (924)
Q Consensus 865 f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~ 895 (924)
+ -+... .....|.++..+|+.+++.
T Consensus 215 i---~Dkla---~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 215 I---VDKLA---FEETKADLLMKLGQLEEAV 239 (700)
T ss_pred H---HHHHH---HhhhHHHHHHHHhhHHhHH
Confidence 2 11112 1223556666667766644
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.49 Score=54.42 Aligned_cols=143 Identities=19% Similarity=0.060 Sum_probs=102.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
...+..|.+++|+..+..+....+ | -....-..+++++..|+..+|.+.++.++. -++.. .-+.++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~P-----~---N~~~~~~~~~i~~~~nk~~~A~e~~~kal~-----l~P~~-~~l~~~ 379 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQP-----D---NPYYLELAGDILLEANKAKEAIERLKKALA-----LDPNS-PLLQLN 379 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhCC-----C---CHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCc-cHHHHH
Confidence 355688999999999999887433 2 456678899999999999999999999987 33333 667889
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|+.+.+.|++.+|+..+.+.+. ....-......||..+..+|.. .+|..-.-+.+ .....+.+|..+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~------~~p~dp~~w~~LAqay~~~g~~--~~a~~A~AE~~----~~~G~~~~A~~~ 447 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLF------NDPEDPNGWDLLAQAYAELGNR--AEALLARAEGY----ALAGRLEQAIIF 447 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhh------cCCCCchHHHHHHHHHHHhCch--HHHHHHHHHHH----HhCCCHHHHHHH
Confidence 99999999999999988876543 2222334456678888778876 55555444443 233556666666
Q ss_pred HHHHHhhhc
Q 002424 833 IAEAKCLLS 841 (924)
Q Consensus 833 ~~LAr~~la 841 (924)
...|+-...
T Consensus 448 l~~A~~~~~ 456 (484)
T COG4783 448 LMRASQQVK 456 (484)
T ss_pred HHHHHHhcc
Confidence 666644443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=95.36 E-value=3.7 Score=49.21 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHhhCchHHHHhH-HHHHHhhcCCCC------------ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 002424 586 SSYLLRATAWEAYGSAPLTRVN-TLIYATCFSDGS------------SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAE 652 (924)
Q Consensus 586 ~~~~l~a~~W~~~G~~~ls~~~-~~~~~~~~~~~~------------~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~ 652 (924)
.....++.+++.-|--- ..++ -+-.+.||.+.. -++.....--..|.++...|.|+.|..++-+|.
T Consensus 655 a~alik~elydkagdlf-eki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~ 733 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLF-EKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN 733 (1636)
T ss_pred HHHHHhhHHHHhhhhHH-HHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh
Confidence 34566777787777432 1121 133455665421 233334444556778888999999988887665
Q ss_pred H
Q 002424 653 E 653 (924)
Q Consensus 653 ~ 653 (924)
-
T Consensus 734 ~ 734 (1636)
T KOG3616|consen 734 C 734 (1636)
T ss_pred h
Confidence 3
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.26 E-value=5.4 Score=43.78 Aligned_cols=140 Identities=15% Similarity=0.080 Sum_probs=94.2
Q ss_pred HHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH-cc--c-----chh
Q 002424 675 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAAN-QFSEAAAVAHSLFCMCYK-FN--L-----QVE 745 (924)
Q Consensus 675 al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G-~~~eAl~~l~~aL~~~~~-~g--d-----~~~ 745 (924)
++..||++.|..++.++..+.....+....--+...++.|.-+...+ ++++|..+++++.+++.. .. . ...
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 57889999999999998886543344445556778899999999999 999999999999999754 11 1 134
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 746 NASVLLLLAEIHKKSGNAVLGIPYALASLSFC-QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 746 ~a~al~~la~i~~~~G~~~~Al~~l~~AL~la-~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
+..++..++.++...+.++.. .-+.+++... .+++++.....-.+ +++...+.. +++.+.+.+.+-.+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~-~ka~~~l~~l~~e~~~~~~~~~L~l---~il~~~~~~--~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESV-EKALNALRLLESEYGNKPEVFLLKL---EILLKSFDE--EEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHH-HHHHHHHHHHHHhCCCCcHHHHHHH---HHHhccCCh--hHHHHHHHHHHHhcc
Confidence 577999999999999988533 3355556665 44455332221111 122224554 666666666555543
|
It is also involved in sporulation []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.24 E-value=6.2 Score=44.52 Aligned_cols=162 Identities=15% Similarity=0.057 Sum_probs=101.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHH
Q 002424 631 LIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 710 (924)
Q Consensus 631 La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~ 710 (924)
-++.-...|+|++|...|+.+. ++.....+.+..++.-+-+.|+...|+++.+++...++.+. .+.
T Consensus 126 eAQaal~eG~~~~Ar~kfeAMl------~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~--------WA~ 191 (531)
T COG3898 126 EAQAALLEGDYEDARKKFEAML------DDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP--------WAA 191 (531)
T ss_pred HHHHHHhcCchHHHHHHHHHHh------cChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc--------hHH
Confidence 3555567899999999888544 23334444444444677789999999999999988755432 233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHH--HHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENAS--VLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~--al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 788 (924)
...-+-.++.||++.|+++++.......-..+.-.+.+ .|..++.-...+ ++..|.....+++.+.-.. .--
T Consensus 192 ~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda-dp~~Ar~~A~~a~KL~pdl-----vPa 265 (531)
T COG3898 192 RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA-DPASARDDALEANKLAPDL-----VPA 265 (531)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCcc-----chH
Confidence 33344557999999999999987664332333333333 444555444444 3677888888887775422 111
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHH
Q 002424 789 ATLTLAELWLSFGPNHAKMASNLIQQA 815 (924)
Q Consensus 789 al~~La~l~~~lG~~~~~~Al~lLe~a 815 (924)
+ +.-+..+..-|.. .++-.++|.+
T Consensus 266 a-v~AAralf~d~~~--rKg~~ilE~a 289 (531)
T COG3898 266 A-VVAARALFRDGNL--RKGSKILETA 289 (531)
T ss_pred H-HHHHHHHHhccch--hhhhhHHHHH
Confidence 1 1134444556665 6666665543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.09 Score=60.36 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHH-HHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENA-SVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a-~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
.+++++++|..+...|+|++|+..+++++++ .....++ .++.++|.+|...|+.++|+..+.+|+++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999985 2223333 57999999999999999999999999997
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=95.01 E-value=1 Score=42.37 Aligned_cols=105 Identities=10% Similarity=0.056 Sum_probs=79.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccch---h
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMD----LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV---E 745 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~----~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~---~ 745 (924)
.+.+.-|-|.+|..-++.+....+.+.+.... --+-+...++..+..+|+|++++...+.+|.++.+.|.-. +
T Consensus 17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG 96 (144)
T PF12968_consen 17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG 96 (144)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc
Confidence 67888999999999999999887766543311 1245666788888999999999999999999988766442 2
Q ss_pred H--HHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 746 N--ASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 746 ~--a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
. +.+-..+|..+...|+++.|+..+..+-++-
T Consensus 97 klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMi 130 (144)
T PF12968_consen 97 KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMI 130 (144)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 2 5577889999999999999999998877765
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.33 Score=54.73 Aligned_cols=101 Identities=18% Similarity=0.106 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccC--ch---H----HHHHH-HhhHHHHHHHcCCHHHHHHHHHHHhhhhh
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS--KS---R----ILLLK-LQLLHERSLHRGHLKLAQKVCDELGVMAS 696 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~--~~---~----~~~l~-l~l~~~~al~~G~~~~A~~~l~~ll~l~~ 696 (924)
..---|..+...|+|..|...++.|...+.... +. + ....+ ++++ ..++..++|.+|...+.+.+.+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA-~c~lKl~~~~~Ai~~c~kvLe~-- 286 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLA-ACYLKLKEYKEAIESCNKVLEL-- 286 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHH-HHHHhhhhHHHHHHHHHHHHhc--
Confidence 334457788899999999999999887654221 11 1 12222 3333 6788999999999999999996
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 697 SVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 697 ~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
|+. -..++++.|.+++..|+|+.|+..++.++.+
T Consensus 287 -----~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 287 -----DPN-NVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred -----CCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 221 5789999999999999999999999999885
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.78 E-value=2.9 Score=46.19 Aligned_cols=211 Identities=16% Similarity=0.068 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH-HHHhhHHHHHH-HcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL-LKLQLLHERSL-HRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~-l~l~l~~~~al-~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+..+++..++..|++++=..+++...+-+...+..+..- ++ .+. +... .-+....-..++.....-+.+-. ..
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR-~Lv-d~~~~~~~~~~~~i~l~~~cIeWA~~ek--Rt 124 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVR-SLV-DMFLKIDDGTGDQIELCTECIEWAKREK--RT 124 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHH-HHH-HHHccCCCCcchHHHHHHHHHHHHHHHh--HH
Confidence 4568899999999999999888888887777666654321 11 110 1111 12222333333443333222111 23
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
..+.....+++.++...++|.+|+.++..++...++..|...-..+.+.-.-+|....+..+|..-+..|-..|....-+
T Consensus 125 FLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp 204 (411)
T KOG1463|consen 125 FLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP 204 (411)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC
Confidence 34556677899999999999999999999999999999998888888888889999999989888887777777555544
Q ss_pred H-HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH--HHHHHHHHHHHHhhhcC
Q 002424 784 L-LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL--ELRARAFIAEAKCLLSD 842 (924)
Q Consensus 784 ~-~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~--~~~A~a~~~LAr~~la~ 842 (924)
. ..|..-+ ...++..-.+ .|..|..++-++.+-.-..++. ...+.=|++|.+..+..
T Consensus 205 PqlQa~lDL-qSGIlha~ek-DykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~ 264 (411)
T KOG1463|consen 205 PQLQATLDL-QSGILHAAEK-DYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNL 264 (411)
T ss_pred HHHHHHHHH-hccceeeccc-ccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcC
Confidence 4 4444433 4444333222 3588999999999988888773 34444578888888774
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.60 E-value=9.4 Score=42.50 Aligned_cols=203 Identities=16% Similarity=0.085 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHH-------------H-HHHcCCHHHHHHHHHH
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHE-------------R-SLHRGHLKLAQKVCDE 690 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~-------------~-al~~G~~~~A~~~l~~ 690 (924)
...-..+|..+....-|+-+.+++.-=+..||...-.. -++....|+ . .-....|..+..+++.
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~--NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAK--NLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHH--HHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 34456778888888889999888887666665332110 111111100 0 0012234455555553
Q ss_pred HhhhhhccCC------CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChh
Q 002424 691 LGVMASSVTG------VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAV 764 (924)
Q Consensus 691 ll~l~~~~~~------~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~ 764 (924)
=+.+|+.-.+ .=.....++..+++.+++.+||-.+|..++.+.-. ....-.+++|.++.+.|+-.
T Consensus 263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P---------ttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP---------TTPYEYILKGVVFAALGQET 333 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC---------CChHHHHHHHHHHHHhhhhc
Confidence 3332221100 00112468999999999999999999988765411 11122334555555555543
Q ss_pred hhHHHHHHHHHH--------------------------HHHhCCcHHH-----H------HHHHHHHHHHHHcCCChHHH
Q 002424 765 LGIPYALASLSF--------------------------CQLLNLDLLK-----A------SATLTLAELWLSFGPNHAKM 807 (924)
Q Consensus 765 ~Al~~l~~AL~l--------------------------a~~~g~~~~~-----A------~al~~La~l~~~lG~~~~~~ 807 (924)
-..+++.-|-.. ..+..+.... + .-.+++|...++.|.. .+
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny--~e 411 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNY--VE 411 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcCh--HH
Confidence 333333211111 1111110000 0 1234577777888887 78
Q ss_pred HHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCC
Q 002424 808 ASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSF 845 (924)
Q Consensus 808 Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~ 845 (924)
|.+++-++ +..+...+-...+.|||||+..+.+
T Consensus 412 aEelf~~i-----s~~~ikn~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 412 AEELFIRI-----SGPEIKNKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHhhh-----cChhhhhhHHHHHHHHHHHHhcCCc
Confidence 87776554 2222234455677899999995443
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.44 E-value=8.9 Score=41.55 Aligned_cols=241 Identities=10% Similarity=-0.003 Sum_probs=155.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhhccCchHH--HHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHH
Q 002424 631 LIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI--LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 708 (924)
Q Consensus 631 La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~--~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~ 708 (924)
+|.-.....+|++|...+.+.+..-.+...-.. .-...--.+..+...|++..-.+...+......... -|...-.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft--k~k~~Ki 86 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT--KPKITKI 86 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc--chhHHHH
Confidence 444555667889998888876654211111110 001111123788899999888888877766544322 1111111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 788 (924)
.....-..-.....++.-+..++..++.+.+......+...-+-+..+|.+.|.|..|+.....-+.--.+..+......
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 11111122234556777888888888877766666666667778889999999999999998888887788877766666
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH-hhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 002424 789 ATLTLAELWLSFGPNHAKMASNLIQQALPLIL-GHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 867 (924)
Q Consensus 789 al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl-~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~ 867 (924)
+.+.=..++..+... .++..-+..+-..+- ..-.+.++|+.-..-|-.+.. ..++..|-.|+=+|++.|..
T Consensus 167 vhllESKvyh~irnv--~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcd------d~dyktA~SYF~Ea~Egft~ 238 (421)
T COG5159 167 VHLLESKVYHEIRNV--SKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCD------DRDYKTASSYFIEALEGFTL 238 (421)
T ss_pred hhhhhHHHHHHHHhh--hhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeec------cccchhHHHHHHHHHhcccc
Confidence 666666677666665 566655555433321 123556677665555544444 56778899999999999999
Q ss_pred hcCHHHHHHHHHHH
Q 002424 868 LEDHELAAEAFYLI 881 (924)
Q Consensus 868 l~~~~~~~~vl~~l 881 (924)
+.+....|..+..+
T Consensus 239 l~~d~kAc~sLkYm 252 (421)
T COG5159 239 LKMDVKACVSLKYM 252 (421)
T ss_pred ccchHHHHHHHHHH
Confidence 99999998887654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.27 Score=41.66 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=49.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 738 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~ 738 (924)
..++..++|.+|...+++++.+.+ . ....+...|.++...|++.+|++.++.+++.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-------~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-------D-DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-------c-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 577899999999999999998733 2 567788899999999999999999999987543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.23 E-value=7.3 Score=41.81 Aligned_cols=188 Identities=16% Similarity=0.083 Sum_probs=119.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
...+..|+|.+|...++.+....+ . .+. .-.+.+.++..+...|+|++|+..+++-+... +.......+..+
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p--~--s~~-~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly---P~~~n~dY~~Yl 113 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHP--F--SPY-SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY---PTHPNADYAYYL 113 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCC--C--Ccc-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC---CCCCChhHHHHH
Confidence 466788999999999998876432 2 333 36788888888899999999999888877643 444445556666
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHhHHHhhCCHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN-HAKMASNLIQQALPLILGHGGLELRARA 831 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~-~~~~Al~lLe~aLp~vl~~gd~~~~A~a 831 (924)
+|.++.. .+....+++...-.|...+.++....-.. +...|..-+..+-.. .|.-
T Consensus 114 kgLs~~~---------------~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~---------LA~~ 169 (254)
T COG4105 114 KGLSYFF---------------QIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDA---------LAGH 169 (254)
T ss_pred HHHHHhc---------------cCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH---------HHHH
Confidence 6665321 11222333333334444455554444443 222233322222111 1222
Q ss_pred HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002424 832 FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 901 (924)
Q Consensus 832 ~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f 901 (924)
=+..|+-|+. .|.+..|+...++.++.| .+-....+++..+..+|..+|..++|++++++-
T Consensus 170 Em~IaryY~k------r~~~~AA~nR~~~v~e~y---~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 170 EMAIARYYLK------RGAYVAAINRFEEVLENY---PDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHHH------hcChHHHHHHHHHHHhcc---ccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 2344566776 788888888777777764 566677889999999999999999999887764
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.19 E-value=5.3 Score=44.17 Aligned_cols=171 Identities=11% Similarity=-0.007 Sum_probs=122.8
Q ss_pred HHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHH
Q 002424 634 HLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRH 713 (924)
Q Consensus 634 ~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~ 713 (924)
.++.+|++.+|-..-+..+.-||. -+++....+..++..|+...-...+++...-... |......+.-..
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~Pt------Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~----dlp~~sYv~Gmy 181 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPT------DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNA----DLPCYSYVHGMY 181 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCch------hhhhhhhhhhHHHhccchhhhhhHHHHhccccCC----CCcHHHHHHHHH
Confidence 467789999998888888777773 2344444458889999999999988888764221 434456666677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHH
Q 002424 714 ARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTL 793 (924)
Q Consensus 714 a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~L 793 (924)
+-.+...|-|++|.+...+++++-+ .-..+...+|.|+.-.|++.++.+.....-...++ -....++..-+-
T Consensus 182 aFgL~E~g~y~dAEk~A~ralqiN~------~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~--s~mlasHNyWH~ 253 (491)
T KOG2610|consen 182 AFGLEECGIYDDAEKQADRALQINR------FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ--SWMLASHNYWHT 253 (491)
T ss_pred HhhHHHhccchhHHHHHHhhccCCC------cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh--hhHHHhhhhHHH
Confidence 7788999999999999999987533 22445667889999999999998877665555442 233444445555
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhHHHhhCC
Q 002424 794 AELWLSFGPNHAKMASNLIQQALPLILGHGG 824 (924)
Q Consensus 794 a~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd 824 (924)
|..++.-+. ++.|+.+++.-+..-++-.|
T Consensus 254 Al~~iE~ae--ye~aleIyD~ei~k~l~k~D 282 (491)
T KOG2610|consen 254 ALFHIEGAE--YEKALEIYDREIWKRLEKDD 282 (491)
T ss_pred HHhhhcccc--hhHHHHHHHHHHHHHhhccc
Confidence 655554444 49999999988777666666
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=94.15 E-value=6 Score=44.41 Aligned_cols=182 Identities=13% Similarity=0.006 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHcc-CHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCC--HHHHHHHHHHHhhhhhccCCCC
Q 002424 626 LAHVKLIQHLAVFK-GYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGH--LKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 626 ~a~~~La~~~a~~G-~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~--~~~A~~~l~~ll~l~~~~~~~D 702 (924)
.+....+.++...| .+++++..++.+.+..|.. ..+|.-+- ......|+ +.++..++..++.+ |
T Consensus 72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn--yqaW~~R~----~~l~~l~~~~~~~el~~~~kal~~-------d 138 (320)
T PLN02789 72 TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN--YQIWHHRR----WLAEKLGPDAANKELEFTRKILSL-------D 138 (320)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc--hHHhHHHH----HHHHHcCchhhHHHHHHHHHHHHh-------C
Confidence 46666777777778 6899999999988876532 22344331 11123444 36788888888875 3
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc---CCh----hhhHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS---GNA----VLGIPYALASLS 775 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~---G~~----~~Al~~l~~AL~ 775 (924)
|. -..++..++.++...|++++|++.++++++. + .....++..++.+..+. |.. ++++.+..+++.
T Consensus 139 pk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-----d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~ 211 (320)
T PLN02789 139 AK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-----D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL 211 (320)
T ss_pred cc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH
Confidence 32 5789999999999999999999999999874 2 22255667777776665 333 356777777777
Q ss_pred HHHHhCCcHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhc
Q 002424 776 FCQLLNLDLLKASATLTLAELWLS----FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 841 (924)
Q Consensus 776 la~~~g~~~~~A~al~~La~l~~~----lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la 841 (924)
+.-.+ ..+...++.++.. ++.. .+|...+.+++.. .. .-..|+..|+.++..
T Consensus 212 ~~P~N------~SaW~Yl~~ll~~~~~~l~~~--~~~~~~~~~~~~~--~~----~s~~al~~l~d~~~~ 267 (320)
T PLN02789 212 ANPRN------ESPWRYLRGLFKDDKEALVSD--PEVSSVCLEVLSK--DS----NHVFALSDLLDLLCE 267 (320)
T ss_pred hCCCC------cCHHHHHHHHHhcCCcccccc--hhHHHHHHHhhcc--cC----CcHHHHHHHHHHHHh
Confidence 65322 2445556666665 3444 5577777665541 11 223466666666654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.08 E-value=1 Score=54.20 Aligned_cols=153 Identities=14% Similarity=-0.040 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
++|...+|.....+++|.++..+++...++-+-.-. .|.-. +..++..+++..|...|.+...+.+ |
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~--~wf~~----G~~ALqlek~q~av~aF~rcvtL~P-----d-- 551 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG--TWFGL----GCAALQLEKEQAAVKAFHRCVTLEP-----D-- 551 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchh--HHHhc----cHHHHHHhhhHHHHHHHHHHhhcCC-----C--
Confidence 456666777777789999999999988877552211 22211 1577889999999999999988632 3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
.++++++++-.+++.|+-.+|...+.+++.. . +....++-+--.+-...|..+.|+..+.+-+.+-+...++-
T Consensus 552 -~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc----n--~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~ 624 (777)
T KOG1128|consen 552 -NAEAWNNLSTAYIRLKKKKRAFRKLKEALKC----N--YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDE 624 (777)
T ss_pred -chhhhhhhhHHHHHHhhhHHHHHHHHHHhhc----C--CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccch
Confidence 7899999999999999999999999999873 2 22223333333344588999999999999999987777665
Q ss_pred HHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELW 797 (924)
Q Consensus 785 ~~A~al~~La~l~ 797 (924)
.-......+.+..
T Consensus 625 vl~~iv~~~~~~~ 637 (777)
T KOG1128|consen 625 VLLIIVRTVLEGM 637 (777)
T ss_pred hhHHHHHHHHhhc
Confidence 5444444444433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.7 Score=50.95 Aligned_cols=165 Identities=12% Similarity=0.027 Sum_probs=84.7
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH-HHHhhHHHHHHHcCCHHHHHHHHHHHhh
Q 002424 615 FSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL-LKLQLLHERSLHRGHLKLAQKVCDELGV 693 (924)
Q Consensus 615 ~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~-l~l~l~~~~al~~G~~~~A~~~l~~ll~ 693 (924)
|...-..|.+...-.-+|..+...|+|++|+..++.+.+. +-.+...|. ++ -..+..|.|.+|..+...+..
T Consensus 47 fk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLA-----cc~FyLg~Y~eA~~~~~ka~k 119 (557)
T KOG3785|consen 47 FKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLA-----CCKFYLGQYIEAKSIAEKAPK 119 (557)
T ss_pred HhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHH-----HHHHHHHHHHHHHHHHhhCCC
Confidence 3333334444455556677777777777777777755541 111122222 11 344567777777765554322
Q ss_pred hhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHH
Q 002424 694 MASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALAS 773 (924)
Q Consensus 694 l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~A 773 (924)
. ......+-.+-.+.||-.+=+..-+.+ +|.. .-.+.+|.+|...-.|++|++.+.+.
T Consensus 120 --------~----pL~~RLlfhlahklndEk~~~~fh~~L-------qD~~---EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 120 --------T----PLCIRLLFHLAHKLNDEKRILTFHSSL-------QDTL---EDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred --------C----hHHHHHHHHHHHHhCcHHHHHHHHHHH-------hhhH---HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112222223333455544433333322 2221 23456677777766777777777766
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 002424 774 LSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQAL 816 (924)
Q Consensus 774 L~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aL 816 (924)
|.-.. -+.|.. ..+|.++..+.-+ +-+.+++.--|
T Consensus 178 L~dn~-----ey~alN-Vy~ALCyyKlDYy--dvsqevl~vYL 212 (557)
T KOG3785|consen 178 LQDNP-----EYIALN-VYMALCYYKLDYY--DVSQEVLKVYL 212 (557)
T ss_pred HhcCh-----hhhhhH-HHHHHHHHhcchh--hhHHHHHHHHH
Confidence 54433 233333 3377777777776 66666555443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.31 Score=58.29 Aligned_cols=127 Identities=13% Similarity=0.021 Sum_probs=96.9
Q ss_pred HHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Q 002424 676 LHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAE 755 (924)
Q Consensus 676 l~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~ 755 (924)
..+++|.+|..+++..+.+-+ +....++..|-+.+..++++.|.+.+...+. ....++.++++++.
T Consensus 496 ~~~~~fs~~~~hle~sl~~np--------lq~~~wf~~G~~ALqlek~q~av~aF~rcvt------L~Pd~~eaWnNls~ 561 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEINP--------LQLGTWFGLGCAALQLEKEQAAVKAFHRCVT------LEPDNAEAWNNLST 561 (777)
T ss_pred ccchhHHHHHHHHHHHhhcCc--------cchhHHHhccHHHHHHhhhHHHHHHHHHHhh------cCCCchhhhhhhhH
Confidence 457999999999999988632 3678899999999999999999999987765 35567889999999
Q ss_pred HHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCC
Q 002424 756 IHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG 824 (924)
Q Consensus 756 i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd 824 (924)
.|++.|.-.+|+..+.+|+.-- .-+-..++-..+ +-..+|. |++|...+.+.+.+-....|
T Consensus 562 ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENyml-----vsvdvge--~eda~~A~~rll~~~~~~~d 622 (777)
T KOG1128|consen 562 AYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYML-----VSVDVGE--FEDAIKAYHRLLDLRKKYKD 622 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhh-----hhhhccc--HHHHHHHHHHHHHhhhhccc
Confidence 9999999999999999998765 222222332222 2234565 49999999988877554433
|
|
| >PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway | Back alignment and domain information |
|---|
Probab=93.84 E-value=3.1 Score=55.02 Aligned_cols=179 Identities=17% Similarity=0.039 Sum_probs=125.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHH---hcC-C-----------------------
Q 002424 710 SLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHK---KSG-N----------------------- 762 (924)
Q Consensus 710 ~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~---~~G-~----------------------- 762 (924)
.-.+|.+++..|++.+|++.+.+++..++..+|..|.+.++=.++.+.. ..| +
T Consensus 245 ~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~s~~ 324 (1185)
T PF08626_consen 245 QKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSSSPR 324 (1185)
T ss_pred hhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCccCcc
Confidence 4457788899999999999999999999999999998876444432221 111 0
Q ss_pred -----------------------------hhhhHHHHHHHHHHHHHh-------CCcHHHHHHHHHHHHHHHHcC-----
Q 002424 763 -----------------------------AVLGIPYALASLSFCQLL-------NLDLLKASATLTLAELWLSFG----- 801 (924)
Q Consensus 763 -----------------------------~~~Al~~l~~AL~la~~~-------g~~~~~A~al~~La~l~~~lG----- 801 (924)
+..=...+.+++.+..+. .-+...+++.+.++.++..+.
T Consensus 325 ~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l 404 (1185)
T PF08626_consen 325 NSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNL 404 (1185)
T ss_pred cCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccch
Confidence 000012334556555544 578899999999999999888
Q ss_pred ---------------CChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 002424 802 ---------------PNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 866 (924)
Q Consensus 802 ---------------~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~ 866 (924)
.. .++...+.++++.-+..-+..++.+.|..+|.+|-. .|-..+..-+++.++..+-
T Consensus 405 ~~iV~~~~~~~~~~~~~--~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~------lG~~RK~AFvlR~l~~~~~ 476 (1185)
T PF08626_consen 405 DHIVKRPLTPTPNISSR--SEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGS------LGFHRKKAFVLRELAVQLV 476 (1185)
T ss_pred hhhhccccccccCCCCH--HHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHh------cchhHHHHHHHHHHHHHhc
Confidence 66 899999999999888777899999999999999887 4544444444443333221
Q ss_pred h-------------------------------------hc-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 867 V-------------------------------------LE-DHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 867 ~-------------------------------------l~-~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
. .+ |+..+..++...-.+-.++||...+-+
T Consensus 477 ~~l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~ 544 (1185)
T PF08626_consen 477 PGLIHWHQSYRSLLEELCKGYGISLDPESSSEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLR 544 (1185)
T ss_pred cccCCcchHHHHHHHHHhccCcccCCccccccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 0 11 666677777777777777777665444
|
To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways []. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.76 E-value=12 Score=44.95 Aligned_cols=242 Identities=14% Similarity=0.078 Sum_probs=152.1
Q ss_pred HHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHH
Q 002424 634 HLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRH 713 (924)
Q Consensus 634 ~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~ 713 (924)
.+..||+...-...+.+|+...|-....++|-+-+. -....|-...+.+.+++-+.+++ +....-
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~----Fv~~~~lPets~rvyrRYLk~~P-----------~~~eey 175 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLK----FVESHGLPETSIRVYRRYLKVAP-----------EAREEY 175 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHH----HHHhCCChHHHHHHHHHHHhcCH-----------HHHHHH
Confidence 345677777777788888877664445568876642 33456666789999999988733 335567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcc-cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHH
Q 002424 714 ARTLLAANQFSEAAAVAHSLFCMCYKFN-LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLT 792 (924)
Q Consensus 714 a~ll~~~G~~~eAl~~l~~aL~~~~~~g-d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~ 792 (924)
.+++...++.++|.+.+...+..-+-.+ -....-..+..++.+..+. +......=-.|+-..--..+........+.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~--p~~~~slnvdaiiR~gi~rftDq~g~Lw~S 253 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN--PDKVQSLNVDAIIRGGIRRFTDQLGFLWCS 253 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC--cchhcccCHHHHHHhhcccCcHHHHHHHHH
Confidence 7889999999999999988775221111 0112233555666555443 333333222333222233345556667788
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHH------HHhhhcCCCCC--------------------
Q 002424 793 LAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAE------AKCLLSDPSFS-------------------- 846 (924)
Q Consensus 793 La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~L------Ar~~la~~~~~-------------------- 846 (924)
||+-|...|.. ++|+++++++|..+....|....-.+|... +++.+++...+
T Consensus 254 LAdYYIr~g~~--ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLF--EKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhh--HHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 99999999887 999999999999998887765544444322 23332311000
Q ss_pred ---------------------------CCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHH
Q 002424 847 ---------------------------VSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAER 894 (924)
Q Consensus 847 ---------------------------~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r 894 (924)
..|++++.+..+.+|..-..-...+..........|.+|...|+.+.+
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence 045566677777777765544444555566677788888888887664
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.15 Score=43.36 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=51.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Q 002424 714 ARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778 (924)
Q Consensus 714 a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~ 778 (924)
..+++..++|++|++.++.++... .....++..+|.++...|++..|+..+.+++++.-
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD------PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 467899999999999999998852 22577888999999999999999999999997764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.69 E-value=14 Score=41.87 Aligned_cols=168 Identities=14% Similarity=-0.082 Sum_probs=108.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHH
Q 002424 631 LIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 710 (924)
Q Consensus 631 La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~ 710 (924)
-|...+.-|+-.+|...-.++.....+-...-+..+.- ..++..|++++|+.-|+.++. ||+.+...+
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeA----Qaal~eG~~~~Ar~kfeAMl~--------dPEtRllGL 157 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEA----QAALLEGDYEDARKKFEAMLD--------DPETRLLGL 157 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHH----HHHHhcCchHHHHHHHHHHhc--------ChHHHHHhH
Confidence 35555667888888887776665543222222333433 577899999999999998876 776655544
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASAT 790 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al 790 (924)
..+=.--.+.|+.+.|..+.+.+-..+. .-.|..++.+ +-....|+.+.|+.++.+....-.-..+.-.+.++.
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap---~l~WA~~AtL---e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAv 231 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAP---QLPWAARATL---EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAV 231 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhcc---CCchHHHHHH---HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHH
Confidence 4443334789999999999998876443 3345555433 234589999999999987766554444455555666
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHh
Q 002424 791 LTLAELWLSFGPNHAKMASNLIQQALP 817 (924)
Q Consensus 791 ~~La~l~~~lG~~~~~~Al~lLe~aLp 817 (924)
+.-+.....+... ...|++.-.+++-
T Consensus 232 LLtAkA~s~ldad-p~~Ar~~A~~a~K 257 (531)
T COG3898 232 LLTAKAMSLLDAD-PASARDDALEANK 257 (531)
T ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHhh
Confidence 6566655544442 2566665555443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=2.6 Score=48.77 Aligned_cols=114 Identities=12% Similarity=-0.038 Sum_probs=80.4
Q ss_pred cCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH
Q 002424 678 RGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIH 757 (924)
Q Consensus 678 ~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~ 757 (924)
..+-.+|.++.+++.++ ++.| +.++..+|.++.-.|+++.|...+++++.+. ...+.++...|.++
T Consensus 317 ~~~~~~a~~~A~rAvel----d~~D----a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~------Pn~A~~~~~~~~~~ 382 (458)
T PRK11906 317 ELAAQKALELLDYVSDI----TTVD----GKILAIMGLITGLSGQAKVSHILFEQAKIHS------TDIASLYYYRALVH 382 (458)
T ss_pred hHHHHHHHHHHHHHHhc----CCCC----HHHHHHHHHHHHhhcchhhHHHHHHHHhhcC------CccHHHHHHHHHHH
Confidence 34455666666666654 4444 5778889999989999999999999998753 34488999999999
Q ss_pred HhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHH-HHHHcCCChHHHHHHHHH
Q 002424 758 KKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAE-LWLSFGPNHAKMASNLIQ 813 (924)
Q Consensus 758 ~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~-l~~~lG~~~~~~Al~lLe 813 (924)
.-+|+.++|+.++.+|+.+. |...+.....+.- +|..-+- +.|+.++-
T Consensus 383 ~~~G~~~~a~~~i~~alrLs-----P~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 431 (458)
T PRK11906 383 FHNEKIEEARICIDKSLQLE-----PRRRKAVVIKECVDMYVPNPL---KNNIKLYY 431 (458)
T ss_pred HHcCCHHHHHHHHHHHhccC-----chhhHHHHHHHHHHHHcCCch---hhhHHHHh
Confidence 99999999999999998875 2222222232333 5554443 56666653
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=93.47 E-value=7.7 Score=42.21 Aligned_cols=168 Identities=20% Similarity=0.053 Sum_probs=91.8
Q ss_pred HccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHH
Q 002424 637 VFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHART 716 (924)
Q Consensus 637 ~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~l 716 (924)
.+++|++|.++|.+....+- ..|++..|-++..-+.+.....+ ++.. -+..-+++.+
T Consensus 2 ~~kky~eAidLL~~Ga~~ll--------------------~~~Q~~sg~DL~~lliev~~~~~--~~~~-~~~~~rl~~l 58 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALILL--------------------KHGQYGSGADLALLLIEVYEKSE--DPVD-EESIARLIEL 58 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHH--------------------HTT-HHHHHHHHHHHHHHHHHTT-----S-HHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH--------------------HCCCcchHHHHHHHHHHHHHHcC--CCCC-HHHHHHHHHH
Confidence 57889999999886655444 34444444444443333333222 1111 1223455555
Q ss_pred HHHcCCHH-HHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 002424 717 LLAANQFS-EAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAE 795 (924)
Q Consensus 717 l~~~G~~~-eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~ 795 (924)
....+.-+ +=.+.+++++......+...|..+.+..+|..+.+.|++..|..|+..+-.- .+.+...+-.
T Consensus 59 ~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~---------~~~~~~~ll~ 129 (260)
T PF04190_consen 59 ISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDP---------SAFAYVMLLE 129 (260)
T ss_dssp HHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH---------HHHHHHHHHH
T ss_pred HHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCCh---------hHHHHHHHHH
Confidence 55554333 3446677778777556677889999999999999999999999998654221 1122322444
Q ss_pred HHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHh
Q 002424 796 LWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKC 838 (924)
Q Consensus 796 l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~ 838 (924)
.|...|.+ .++--.+-++.=..+..++....-.++..+-+-
T Consensus 130 ~~~~~~~~--~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 130 EWSTKGYP--SEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHTSS----HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCC--cchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 55666766 555555555555556666766555555444443
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.35 E-value=4 Score=43.91 Aligned_cols=145 Identities=18% Similarity=0.105 Sum_probs=92.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHH
Q 002424 629 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 708 (924)
Q Consensus 629 ~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~ 708 (924)
.--|..+...|+|++|+.++.....+ -...+++ ...+...+.+-|...++++..+.. | ...
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~~l---------E~~Al~V--qI~lk~~r~d~A~~~lk~mq~ide-----d---~tL 172 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGENL---------EAAALNV--QILLKMHRFDLAEKELKKMQQIDE-----D---ATL 172 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccchH---------HHHHHHH--HHHHHHHHHHHHHHHHHHHHccch-----H---HHH
Confidence 33455677889999999988742111 1112222 466778888999999998887521 3 233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL-QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd-~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
..+..+++-+..|- +.++.+.-++.+..+ .......++.+|.+|+..|++++|...+..||.- ..++ .
T Consensus 173 tQLA~awv~la~gg-----ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~d----p 241 (299)
T KOG3081|consen 173 TQLAQAWVKLATGG-----EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKD----P 241 (299)
T ss_pred HHHHHHHHHHhccc-----hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCC----H
Confidence 33444444455542 224445445555455 3445678899999999999999999999988764 4455 3
Q ss_pred HHHHHHHHHHHHcCCC
Q 002424 788 SATLTLAELWLSFGPN 803 (924)
Q Consensus 788 ~al~~La~l~~~lG~~ 803 (924)
.++.++--.-+.+|.+
T Consensus 242 etL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 4444455455668887
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.34 E-value=8.2 Score=40.38 Aligned_cols=230 Identities=10% Similarity=0.011 Sum_probs=134.0
Q ss_pred ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccC
Q 002424 620 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 620 ~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~ 699 (924)
..|.++..+...|..+-..|=.+-|.--+.+++.+.|...+ ..+..+.-....|+|+.|.+.+.....+
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~------vfNyLG~Yl~~a~~fdaa~eaFds~~EL----- 128 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE------VFNYLGIYLTQAGNFDAAYEAFDSVLEL----- 128 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH------HHHHHHHHHHhcccchHHHHHhhhHhcc-----
Confidence 45677888888888887777777777777777777664333 1222224556789999999999888886
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHH-HHHHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYA-LASLSFCQ 778 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l-~~AL~la~ 778 (924)
||. --.+..++|..+..-|+|.-|.+-+.+--. .|+..-.|++.+- +--.-=+|..|...+ .++..+.+
T Consensus 129 --Dp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ-----~D~~DPfR~LWLY--l~E~k~dP~~A~tnL~qR~~~~d~ 198 (297)
T COG4785 129 --DPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQ-----DDPNDPFRSLWLY--LNEQKLDPKQAKTNLKQRAEKSDK 198 (297)
T ss_pred --CCc-chHHHhccceeeeecCchHhhHHHHHHHHh-----cCCCChHHHHHHH--HHHhhCCHHHHHHHHHHHHHhccH
Confidence 332 346677888888888899888876654433 4454445543321 111334566775444 33333332
Q ss_pred HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCC-HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 002424 779 LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG-LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDP 857 (924)
Q Consensus 779 ~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd-~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~ 857 (924)
..+-.. +... -+|.. .-..+.+++..-...... .+.-..+|+-||+-++. .|+.++|...
T Consensus 199 ----e~WG~~----iV~~--yLgki---S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~------~G~~~~A~~L 259 (297)
T COG4785 199 ----EQWGWN----IVEF--YLGKI---SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLS------LGDLDEATAL 259 (297)
T ss_pred ----hhhhHH----HHHH--HHhhc---cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc------cccHHHHHHH
Confidence 111111 2222 25554 112233333333321111 12335679999999999 8999988888
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCH
Q 002424 858 LRQASEELQVLEDHELAAEAFYLIAIVFDKLGRL 891 (924)
Q Consensus 858 L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~ 891 (924)
++-|.+ -.+-.....+=++..++.+.....+.
T Consensus 260 fKLaia--nnVynfVE~RyA~~EL~~l~q~~~~l 291 (297)
T COG4785 260 FKLAVA--NNVYNFVEHRYALLELSLLGQDQDDL 291 (297)
T ss_pred HHHHHH--HhHHHHHHHHHHHHHHHHhccccchh
Confidence 776643 23334444555666677666555433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.21 E-value=24 Score=42.39 Aligned_cols=186 Identities=12% Similarity=0.071 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HhhccCch-HHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhcc--
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEE-KFLSVSKS-RILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSV-- 698 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~-~f~~~~~~-~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~-- 698 (924)
......+.+|..+...|+.+.|..+++.|.. .|+...+- ..|+-.- +.-+++.+++.|..+.+++..+ +..
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wa----emElrh~~~~~Al~lm~~A~~v-P~~~~ 459 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWA----EMELRHENFEAALKLMRRATHV-PTNPE 459 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHH----HHHHhhhhHHHHHHHHHhhhcC-CCchh
Confidence 4457788999999999999999999998887 35554442 2454332 6778899999999999988764 222
Q ss_pred -CCCC-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc-hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHH
Q 002424 699 -TGVD-MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ-VENASVLLLLAEIHKKSGNAVLGIPYALASLS 775 (924)
Q Consensus 699 -~~~D-~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~-~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~ 775 (924)
+.-| .+-.-.-+.+--.++.-.-|++|++-.++..-....+.-|- -..-..-++-|..+....-++.++..+.+.+.
T Consensus 460 ~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 460 LEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 1011 11122233444455555556666665555443333322111 11233455566666566666777777777666
Q ss_pred HHH-HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 002424 776 FCQ-LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALP 817 (924)
Q Consensus 776 la~-~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp 817 (924)
+.. -+-.+.+-.. |-..--+.|-.+.++|++++|+||.
T Consensus 540 LFk~p~v~diW~tY----Ltkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTY----LTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred cCCCccHHHHHHHH----HHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 542 1111111111 1111123455556788888888776
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.96 E-value=2.6 Score=52.41 Aligned_cols=176 Identities=13% Similarity=-0.059 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+.+-..++..++..-++++|...+-.+-+..+......-|... + -.++..+++..|...++.++.. ++.
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~r-G---~yyLea~n~h~aV~~fQsALR~----dPk-- 594 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQR-G---PYYLEAHNLHGAVCEFQSALRT----DPK-- 594 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhc-c---ccccCccchhhHHHHHHHHhcC----Cch--
Confidence 34555667888899999999999977666554432222223321 1 4667899999999999998874 233
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH-HHhCC
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC-QLLNL 782 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la-~~~g~ 782 (924)
-..++..+|+.+.+.|+|+.|++.++++..+ +.....+..-.|.+....|.+..|+..+..-+... ...-.
T Consensus 595 --D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~ 666 (1238)
T KOG1127|consen 595 --DYNLWLGLGEAYPESGRYSHALKVFTKASLL------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTG 666 (1238)
T ss_pred --hHHHHHHHHHHHHhcCceehHHHhhhhhHhc------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3688999999999999999999999887542 22233445566777778899999987775433322 33334
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 783 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
+.+.++.+++++......|-. .+|.+.++..+..+
T Consensus 667 q~gLaE~~ir~akd~~~~gf~--~kavd~~eksie~f 701 (1238)
T KOG1127|consen 667 QNGLAESVIRDAKDSAITGFQ--KKAVDFFEKSIESF 701 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHH
Confidence 455667777788888788877 78888888877765
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.15 Score=42.60 Aligned_cols=55 Identities=22% Similarity=0.129 Sum_probs=44.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 717 LLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 717 l~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
++..|+|++|++.+++++... .....+...+|.++.+.|++++|...+.+.+...
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467899999999999998742 2246778899999999999999999988766554
|
... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.94 E-value=1.5 Score=44.72 Aligned_cols=128 Identities=16% Similarity=0.070 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHH
Q 002424 728 AVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKM 807 (924)
Q Consensus 728 ~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~ 807 (924)
+.++.-+..+..........+++..+|..|.+.|+.+.|+..+.++...+.. ........+.+..+....|+. ..
T Consensus 17 ~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~---~~~~id~~l~~irv~i~~~d~--~~ 91 (177)
T PF10602_consen 17 EKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS---PGHKIDMCLNVIRVAIFFGDW--SH 91 (177)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHHHHhCCH--HH
Confidence 3344444444433333444567888899999999999998888887665532 333444455566666778887 88
Q ss_pred HHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 002424 808 ASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 866 (924)
Q Consensus 808 Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~ 866 (924)
+...++++-..+...||...+.+.-..-|-.+++ .+++.+|...+-.+...|.
T Consensus 92 v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~------~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 92 VEKYIEKAESLIEKGGDWERRNRLKVYEGLANLA------QRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH------hchHHHHHHHHHccCcCCC
Confidence 8888888888888888877777766666666666 6777777777766665553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=92.88 E-value=11 Score=45.17 Aligned_cols=173 Identities=9% Similarity=-0.003 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
.+.-.|..+.-.|+-++|......+...- ...+--|++ .+...+.--+|++|..+++.++.+-+ | -
T Consensus 43 slAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv----~gl~~R~dK~Y~eaiKcy~nAl~~~~-----d---N 108 (700)
T KOG1156|consen 43 SLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHV----LGLLQRSDKKYDEAIKCYRNALKIEK-----D---N 108 (700)
T ss_pred hHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHH----HHHHHhhhhhHHHHHHHHHHHHhcCC-----C---c
Confidence 34455666667788888888777655421 111112332 22466677888999999998888622 3 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHH--HhCCcH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ--LLNLDL 784 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~--~~g~~~ 784 (924)
...+.-++.+...+|+|+...+.=.+.+++ ...+.--++..|..+.-.|++..|...+.+-...+. -....+
T Consensus 109 ~qilrDlslLQ~QmRd~~~~~~tr~~LLql------~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~ 182 (700)
T KOG1156|consen 109 LQILRDLSLLQIQMRDYEGYLETRNQLLQL------RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDY 182 (700)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHH
Confidence 566777888888888888888777666653 333344566777778888888888888776655553 223455
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
....+.+.-..++...|.. +.|++++...=+.+..
T Consensus 183 e~se~~Ly~n~i~~E~g~~--q~ale~L~~~e~~i~D 217 (700)
T KOG1156|consen 183 EHSELLLYQNQILIEAGSL--QKALEHLLDNEKQIVD 217 (700)
T ss_pred HHHHHHHHHHHHHHHcccH--HHHHHHHHhhhhHHHH
Confidence 6667777777777788887 8888888888777653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.93 Score=48.81 Aligned_cols=93 Identities=13% Similarity=0.096 Sum_probs=68.9
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 753 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~l 753 (924)
-++..|+|.+|...|..-+.-++. -.-...+.+.+|+.+..+|+|.+|...+..+.. +.++.....++|+-+
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~~YP~-----s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApdallKl 221 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIKKYPN-----STYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-----CcccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHHHHHH
Confidence 445667788887777777765542 223568888888888888888888888876655 556666677888888
Q ss_pred HHHHHhcCChhhhHHHHHHHH
Q 002424 754 AEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 754 a~i~~~~G~~~~Al~~l~~AL 774 (924)
|.+..+.|+.+.|...+.+.+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 888888888888877776544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.53 E-value=11 Score=37.15 Aligned_cols=174 Identities=22% Similarity=0.135 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHH-HHHHcCCHHHHHHHHHHHhhhhhccCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHE-RSLHRGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~-~al~~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
........++......+.|.++...+..+....+..... .... . . .+...|++..|...+.++... ...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~---~~~~~~~~~~~~a~~~~~~~~~~-~~~--- 162 (291)
T COG0457 93 NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLA--EALL-A---LGALYELGDYEEALELYEKALEL-DPE--- 162 (291)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchH--HHHH-H---HHHHHHcCCHHHHHHHHHHHHhc-CCC---
Confidence 335667778888888888999999998877654432111 1111 0 2 567899999999999998552 110
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
...........+..+...|++.+|+..+..++...... ...+...++..+...|.+..|...+..++.....
T Consensus 163 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-- 234 (291)
T COG0457 163 -LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-- 234 (291)
T ss_pred -ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--
Confidence 01245556666666888999999999999988753321 4667888888999999999999999888887754
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
.......++..+...|.. .+|...+..++....
T Consensus 235 ----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 267 (291)
T COG0457 235 ----NAEALYNLALLLLELGRY--EEALEALEKALELDP 267 (291)
T ss_pred ----cHHHHhhHHHHHHHcCCH--HHHHHHHHHHHHhCc
Confidence 334455566666555544 778877777765543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.98 Score=45.24 Aligned_cols=90 Identities=13% Similarity=0.042 Sum_probs=67.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
......|++++|+.+++-+..+ |+. .......+|.++..+|+|++|+..+..+..+. ..|++. ...
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~-------d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p----~f~ 110 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIY-------DFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRP----VFF 110 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-------CcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCc----cch
Confidence 3556788888888888877654 332 24567889999999999999999998776542 244444 556
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
.|++++..|+...|+..+..++..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhC
Confidence 788899999999999888777774
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.31 Score=35.75 Aligned_cols=29 Identities=7% Similarity=0.057 Sum_probs=14.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 002424 710 SLRHARTLLAANQFSEAAAVAHSLFCMCY 738 (924)
Q Consensus 710 ~~~~a~ll~~~G~~~eAl~~l~~aL~~~~ 738 (924)
+.++|.++...|+|++|+++++++|.+.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 34455555555555555555555444433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.20 E-value=5.8 Score=43.34 Aligned_cols=148 Identities=24% Similarity=0.196 Sum_probs=90.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHH
Q 002424 632 IQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASL 711 (924)
Q Consensus 632 a~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~ 711 (924)
+.-....|++.+|...|..++...++..+-. +.++ +.++..|+.++|..++.++-.- +.......+.
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~-----~~la-~~~l~~g~~e~A~~iL~~lP~~-------~~~~~~~~l~ 207 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAK-----LLLA-ECLLAAGDVEAAQAILAALPLQ-------AQDKAAHGLQ 207 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHH-----HHHH-HHHHHcCChHHHHHHHHhCccc-------chhhHHHHHH
Confidence 3445678999999999999988877543321 1122 6778899999999988876441 1111223223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHH
Q 002424 712 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATL 791 (924)
Q Consensus 712 ~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~ 791 (924)
....++.+.....+.....+++-. + .....+-+.+|..+...|+++.|++++..-+..-+...++ .++.
T Consensus 208 a~i~ll~qaa~~~~~~~l~~~~aa------d-Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~----~~Rk 276 (304)
T COG3118 208 AQIELLEQAAATPEIQDLQRRLAA------D-PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG----EARK 276 (304)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHh------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc----HHHH
Confidence 334555555544444444433322 1 1123455678888999999999999997666654444333 3445
Q ss_pred HHHHHHHHcCCC
Q 002424 792 TLAELWLSFGPN 803 (924)
Q Consensus 792 ~La~l~~~lG~~ 803 (924)
.|-++...+|..
T Consensus 277 ~lle~f~~~g~~ 288 (304)
T COG3118 277 TLLELFEAFGPA 288 (304)
T ss_pred HHHHHHHhcCCC
Confidence 566777778854
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.15 E-value=1.4 Score=47.43 Aligned_cols=98 Identities=16% Similarity=0.048 Sum_probs=80.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc---hHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK---SRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~---~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..+.|+-+...|+|.+|.+.|..=...||.... ..+|.- +..+.+|+|.+|...+.....-++. -.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLG------e~~y~qg~y~~Aa~~f~~~~k~~P~-----s~ 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLG------ESLYAQGDYEDAAYIFARVVKDYPK-----SP 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHH------HHHHhcccchHHHHHHHHHHHhCCC-----CC
Confidence 788999999999999999999988888886543 234543 4667999999999999998875443 22
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
-..++++-+|.++.++|+.++|...+++++..
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 25699999999999999999999999998874
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.87 Score=52.55 Aligned_cols=67 Identities=16% Similarity=-0.008 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 746 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA-SATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 746 ~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A-~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
.+.+++++|.++.+.|++++|+..+.+|+++.- ....+ .++.++|.+|..+|+. ++|++.+++++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P----d~aeA~~A~yNLAcaya~LGr~--dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNP----NPDEAQAAYYNKACCHAYREEG--KKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CchHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh
Confidence 467899999999999999999999999999852 12222 5689999999999998 9999999999986
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.03 E-value=1.6 Score=44.88 Aligned_cols=98 Identities=17% Similarity=0.047 Sum_probs=68.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHH
Q 002424 629 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 708 (924)
Q Consensus 629 ~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~ 708 (924)
-.=|.-+...|+|++|...+.+|++..|+... ..+.+.+..-....+.++.|..|..-+..+..|.+. .-.
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt--------y~k 169 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT--------YEK 169 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch--------hHH
Confidence 34466677889999999999999988775544 222222221113456788888888888888877432 345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~ 735 (924)
++.+++.++-....|++|++-+..+++
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666888888888888888888887776
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.22 Score=35.59 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Q 002424 372 IALLCLGMMHFHFGHPKQALDVLTEAVCLSQQ 403 (924)
Q Consensus 372 yall~la~~h~~fg~~~~A~~~l~Eai~~Aqe 403 (924)
.+..++|.+|...|++++|+..+++||++-.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 36789999999999999999999999998543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.85 E-value=6.3 Score=46.74 Aligned_cols=167 Identities=15% Similarity=0.076 Sum_probs=109.7
Q ss_pred HcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHHHHHcccchhHH
Q 002424 677 HRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL---------AANQFSEAAAVAHSLFCMCYKFNLQVENA 747 (924)
Q Consensus 677 ~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~---------~~G~~~eAl~~l~~aL~~~~~~gd~~~~a 747 (924)
..||-+.+.+.+.+...- + +..+...++..++.... ..++...|.+.++.....+ + .-+
T Consensus 200 F~gdR~~GL~~L~~~~~~----~--~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-----P-~s~ 267 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS----E--NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-----P-NSA 267 (468)
T ss_pred cCCcHHHHHHHHHHHhcc----C--CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-----C-CcH
Confidence 467777777777765441 1 33333333333333322 2335556666666665522 2 224
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHH
Q 002424 748 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLEL 827 (924)
Q Consensus 748 ~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~ 827 (924)
-.+...|.++...|+.+.|+..+.+|+.. +...+-........++-.+..+++. ++|...+..... .+.+-
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~--q~~~~Ql~~l~~~El~w~~~~~~~w--~~A~~~f~~L~~-----~s~WS 338 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIES--QSEWKQLHHLCYFELAWCHMFQHDW--EEAAEYFLRLLK-----ESKWS 338 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccc--hhhHHhHHHHHHHHHHHHHHHHchH--HHHHHHHHHHHh-----ccccH
Confidence 56888999999999999999999998843 3345556677778888888888887 999998887755 47778
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcC
Q 002424 828 RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLED 870 (924)
Q Consensus 828 ~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~ 870 (924)
+|...+..|-|+.. .|+...+...-++|.+.|+++..
T Consensus 339 ka~Y~Y~~a~c~~~------l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 339 KAFYAYLAAACLLM------LGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHHHh------hccchhhhhhHHHHHHHHHHHHH
Confidence 99999999999998 66664444444444444444433
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.83 E-value=2.9 Score=49.51 Aligned_cols=126 Identities=16% Similarity=0.006 Sum_probs=90.2
Q ss_pred ccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHH
Q 002424 638 FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTL 717 (924)
Q Consensus 638 ~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll 717 (924)
.+..+.|.++|+...++|| ++.+|.+-.. +..+..|+.++|.+.++++...... -+.....+.+.++..+
T Consensus 246 ~~~~~~a~~lL~~~~~~yP---~s~lfl~~~g---R~~~~~g~~~~Ai~~~~~a~~~q~~----~~Ql~~l~~~El~w~~ 315 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYP---NSALFLFFEG---RLERLKGNLEEAIESFERAIESQSE----WKQLHHLCYFELAWCH 315 (468)
T ss_pred CCCHHHHHHHHHHHHHhCC---CcHHHHHHHH---HHHHHhcCHHHHHHHHHHhccchhh----HHhHHHHHHHHHHHHH
Confidence 3457788888888888887 3444443322 6777899999999999976642121 2445677888899999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCCh-------hhhHHHHHHHHHHHH
Q 002424 718 LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNA-------VLGIPYALASLSFCQ 778 (924)
Q Consensus 718 ~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~-------~~Al~~l~~AL~la~ 778 (924)
+.+++|++|.+.+..+.. .....++--....|.++...|+. ++|...+.++-.+..
T Consensus 316 ~~~~~w~~A~~~f~~L~~-----~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 316 MFQHDWEEAAEYFLRLLK-----ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHchHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 999999999999888776 33445666778888888888888 556666655555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.3 Score=36.35 Aligned_cols=33 Identities=27% Similarity=0.235 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhc
Q 002424 372 IALLCLGMMHFHFGHPKQALDVLTEAVCLSQQH 404 (924)
Q Consensus 372 yall~la~~h~~fg~~~~A~~~l~Eai~~Aqe~ 404 (924)
.++.|||.+|...|++++|+..+++++.+.+..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 378899999999999999999999999998865
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.69 E-value=2.4 Score=46.30 Aligned_cols=98 Identities=17% Similarity=0.011 Sum_probs=71.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchH-H-HHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR-I-LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~-~-~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
..-||..+..+|+++.|...+.+|.++-+ ++. + ..+...+ ...-..-.-.++..++++++.+ |+.
T Consensus 159 W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g---~n~~~~~g~aeaL--~~~a~~~~ta~a~~ll~~al~~-------D~~- 225 (287)
T COG4235 159 WDLLGRAYMALGRASDALLAYRNALRLAG---DNPEILLGLAEAL--YYQAGQQMTAKARALLRQALAL-------DPA- 225 (287)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhCC---CCHHHHHHHHHHH--HHhcCCcccHHHHHHHHHHHhc-------CCc-
Confidence 45688999999999999999999997754 332 2 1222211 1122455677888999999885 332
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 738 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~ 738 (924)
...++..++.-.+..|+|.+|....+.++....
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 578888999999999999999999999888544
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.64 E-value=6.5 Score=42.54 Aligned_cols=202 Identities=11% Similarity=0.011 Sum_probs=144.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCC--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchh--HHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVD--MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE--NAS 748 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D--~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~--~a~ 748 (924)
..+....++.+|...+.+++.- .+.-.| ..-+-.+...+..++...|++..--+.+...-+.-.....+.. .+|
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~k--g~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGK--GVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcC--CCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 5677889999999999998873 222112 1112345678999999999998777766654332222111111 122
Q ss_pred HHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHH
Q 002424 749 VLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELR 828 (924)
Q Consensus 749 al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~ 828 (924)
.++.+ +-......+.-+..+..+++.|.+-.-..++-..-+-+..++..-|.. ..|+.++.-.+.-.....|...-
T Consensus 89 tLiek--f~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~Y--sdalalIn~ll~ElKk~DDK~~L 164 (421)
T COG5159 89 TLIEK--FPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKY--SDALALINPLLHELKKYDDKINL 164 (421)
T ss_pred HHHHh--cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHhhcCccce
Confidence 22222 223444556668888889999977777777777778889999999998 99999999999999999998888
Q ss_pred HHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 002424 829 ARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFD 886 (924)
Q Consensus 829 A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~ 886 (924)
-.++..-.+++.+ .....++..-|..|...+..+-+|.+..--+-++.-++|
T Consensus 165 i~vhllESKvyh~------irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlh 216 (421)
T COG5159 165 ITVHLLESKVYHE------IRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILH 216 (421)
T ss_pred eehhhhhHHHHHH------HHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhcccee
Confidence 8888888888888 677788888999999999999998876655555544443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.52 E-value=32 Score=39.95 Aligned_cols=202 Identities=14% Similarity=0.054 Sum_probs=129.2
Q ss_pred cCHHHHHHHHHHHHHHhhccC--chHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHH
Q 002424 639 KGYKEAFSALKIAEEKFLSVS--KSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHART 716 (924)
Q Consensus 639 G~y~eA~~~L~~a~~~f~~~~--~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~l 716 (924)
.+.+.+.++++.++.+.|.-. -+.+|.+.. .-.+++-+...|+.++..+...++. | ..--.-+++
T Consensus 380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA----~feIRq~~l~~ARkiLG~AIG~cPK----~-----KlFk~YIel 446 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYA----QFEIRQLNLTGARKILGNAIGKCPK----D-----KLFKGYIEL 446 (677)
T ss_pred hhHHHHHHHHHHHHhhcCcccchHHHHHHHHH----HHHHHHcccHHHHHHHHHHhccCCc----h-----hHHHHHHHH
Confidence 345566677777777655222 134677654 4557888999999999998886542 2 333445566
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Q 002424 717 LLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAEL 796 (924)
Q Consensus 717 l~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l 796 (924)
-+.+++++.-..+++.-++. ......++..-|++-...|+.++|...+.-|++--. ..+--++--+-+
T Consensus 447 ElqL~efDRcRkLYEkfle~------~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~------ldmpellwkaYI 514 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEF------SPENCYAWSKYAELETSLGDTDRARAIFELAISQPA------LDMPELLWKAYI 514 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhc------ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc------cccHHHHHHHhh
Confidence 67888999999999888763 455677889999999999999999888865543321 111112222222
Q ss_pred HHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCC-----------ChHHHHHHHHHHHHHH
Q 002424 797 WLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQ-----------NPEAVLDPLRQASEEL 865 (924)
Q Consensus 797 ~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g-----------~~~~Al~~L~~A~~~f 865 (924)
-..+...++++|+.++++.|..-.. ..+....|+-..+.+. +..+ ....|...+++|...+
T Consensus 515 dFEi~~~E~ekaR~LYerlL~rt~h-------~kvWisFA~fe~s~~~-~~~~~~~~~~e~~~~~~~~AR~iferAn~~~ 586 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLDRTQH-------VKVWISFAKFEASASE-GQEDEDLAELEITDENIKRARKIFERANTYL 586 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHHhccc-------chHHHhHHHHhccccc-cccccchhhhhcchhHHHHHHHHHHHHHHHH
Confidence 2233334569999999999876432 2255555544443111 1111 3457888888888888
Q ss_pred HhhcCHHH
Q 002424 866 QVLEDHEL 873 (924)
Q Consensus 866 ~~l~~~~~ 873 (924)
+..+....
T Consensus 587 k~~~~Kee 594 (677)
T KOG1915|consen 587 KESTPKEE 594 (677)
T ss_pred HhcCcHHH
Confidence 88877433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.52 E-value=1.6 Score=42.69 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=63.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|+|.+|.+.++.+..-++-- .-...+.+.++..+...|+|.+|+..+++-+++.-. ....-.++..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g-----~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~---hp~vdYa~Y~ 89 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFG-----EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT---HPNVDYAYYM 89 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCC-----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CCCccHHHHH
Confidence 57789999999999999998865521 235688999999999999999999999988875322 2223447788
Q ss_pred HHHHHHhcCC
Q 002424 753 LAEIHKKSGN 762 (924)
Q Consensus 753 la~i~~~~G~ 762 (924)
+|.++.....
T Consensus 90 ~gL~~~~~~~ 99 (142)
T PF13512_consen 90 RGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHhh
Confidence 8877776654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.36 E-value=16 Score=35.97 Aligned_cols=208 Identities=22% Similarity=0.128 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
.......+..+...|++..+...+........ ... ........ .......+++..+...+......... +
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~-- 128 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELEL-LPN--LAEALLNL-GLLLEALGKYEEALELLEKALALDPD----P-- 128 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhh-ccc--hHHHHHHH-HHHHHHHhhHHHHHHHHHHHHcCCCC----c--
Confidence 45667777888889999999998887765300 001 01111111 14556778899999999988774221 1
Q ss_pred hHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHccc-chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC
Q 002424 705 LKTEASLRHAR-TLLAANQFSEAAAVAHSLFCMCYKFNL-QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 705 ~~a~a~~~~a~-ll~~~G~~~eAl~~l~~aL~~~~~~gd-~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~ 782 (924)
......... ++...|+++.|...+.+++.. .. ...........+..+...|++..|+..+.+++......
T Consensus 129 --~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 200 (291)
T COG0457 129 --DLAEALLALGALYELGDYEEALELYEKALEL----DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-- 200 (291)
T ss_pred --chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc--
Confidence 122233333 889999999999999998551 11 13445556666666888999999999999998887643
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 002424 783 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQAS 862 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~ 862 (924)
...+...++..+...|.. .+|...+..++..... .+..+..++..+.. .+....+...+.++.
T Consensus 201 ---~~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 263 (291)
T COG0457 201 ---DAEALLNLGLLYLKLGKY--EEALEYYEKALELDPD------NAEALYNLALLLLE------LGRYEEALEALEKAL 263 (291)
T ss_pred ---chHHHHHhhHHHHHcccH--HHHHHHHHHHHhhCcc------cHHHHhhHHHHHHH------cCCHHHHHHHHHHHH
Confidence 445567788888888876 8999999888777654 33444455544443 567788888888887
Q ss_pred HHHHh
Q 002424 863 EELQV 867 (924)
Q Consensus 863 ~~f~~ 867 (924)
.....
T Consensus 264 ~~~~~ 268 (291)
T COG0457 264 ELDPD 268 (291)
T ss_pred HhCcc
Confidence 76654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.42 Score=34.06 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 002424 373 ALLCLGMMHFHFGHPKQALDVLTEAVCLSQ 402 (924)
Q Consensus 373 all~la~~h~~fg~~~~A~~~l~Eai~~Aq 402 (924)
++.++|.+|...|++++|+.+|++|+.+.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 578899999999999999999999999987
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=91.08 E-value=12 Score=36.22 Aligned_cols=109 Identities=22% Similarity=0.099 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCch-----------H--H---HHHHHhhHHHHHHHcCCHHHHHHHHH
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKS-----------R--I---LLLKLQLLHERSLHRGHLKLAQKVCD 689 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~-----------~--~---~~l~l~l~~~~al~~G~~~~A~~~l~ 689 (924)
..+++.|......|+...+...++++..++.+.--. + . ..-.+......+...|++.+|..++.
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344556767777889999999999999887542110 0 0 01111111256677899999999988
Q ss_pred HHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-Hccc
Q 002424 690 ELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY-KFNL 742 (924)
Q Consensus 690 ~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~-~~gd 742 (924)
+++.+ ||. .-.+...+..++...|++.+|++.+++...... +.|.
T Consensus 87 ~~l~~-------dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~ 132 (146)
T PF03704_consen 87 RALAL-------DPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI 132 (146)
T ss_dssp HHHHH-------STT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHhc-------CCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence 88886 433 235667778888899999999988888766544 3443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.07 E-value=30 Score=41.86 Aligned_cols=245 Identities=17% Similarity=0.070 Sum_probs=132.4
Q ss_pred HHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHH
Q 002424 634 HLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRH 713 (924)
Q Consensus 634 ~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~ 713 (924)
.-+.-|+|+||..++-.+..+ .++.......|||-...++++.- -++.|..+.-.+..++
T Consensus 743 i~~~~g~feeaek~yld~drr--------------DLAielr~klgDwfrV~qL~r~g------~~d~dD~~~e~A~r~i 802 (1189)
T KOG2041|consen 743 ISAFYGEFEEAEKLYLDADRR--------------DLAIELRKKLGDWFRVYQLIRNG------GSDDDDEGKEDAFRNI 802 (1189)
T ss_pred HhhhhcchhHhhhhhhccchh--------------hhhHHHHHhhhhHHHHHHHHHcc------CCCcchHHHHHHHHHH
Confidence 334568999998887766643 11114556788888777665532 2334556677788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH-----HHHHcccchhH----HH-------HHHHHH-------------HHHHhcCChh
Q 002424 714 ARTLLAANQFSEAAAVAHSLFC-----MCYKFNLQVEN----AS-------VLLLLA-------------EIHKKSGNAV 764 (924)
Q Consensus 714 a~ll~~~G~~~eAl~~l~~aL~-----~~~~~gd~~~~----a~-------al~~la-------------~i~~~~G~~~ 764 (924)
|+....+..+++|.+.+...-. .|--.+...+. ++ .+-.+| ++|++.+.+.
T Consensus 803 g~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk 882 (1189)
T KOG2041|consen 803 GETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK 882 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH
Confidence 8888888888888887753310 11000111111 10 122223 4566777776
Q ss_pred hhHHHH------HHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC------------hHHHHHHHHHHHHhHHHhhCCHH
Q 002424 765 LGIPYA------LASLSFCQLLNLDLLKASATLTLAELWLSFGPN------------HAKMASNLIQQALPLILGHGGLE 826 (924)
Q Consensus 765 ~Al~~l------~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~------------~~~~Al~lLe~aLp~vl~~gd~~ 826 (924)
+|...+ -+|+++|+++.++-....+-..-+.+. +-|.. |++ |-+++-+..+.-.+-+.++
T Consensus 883 aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll-~~~~~~eaIe~~Rka~~~~d-aarll~qmae~e~~K~~p~ 960 (1189)
T KOG2041|consen 883 AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLL-ADANHMEAIEKDRKAGRHLD-AARLLSQMAEREQEKYVPY 960 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-hhcchHHHHHHhhhcccchh-HHHHHHHHhHHHhhccCCH
Confidence 665433 368888888887766555444333332 22222 233 3333444444445567777
Q ss_pred HHHHHHHHHHHhhhcCC--------CCCCCCChHHHHHHHHH-HHHHHHhhcC-HHHHHHHH--HHHHHHHHhcCCHHHH
Q 002424 827 LRARAFIAEAKCLLSDP--------SFSVSQNPEAVLDPLRQ-ASEELQVLED-HELAAEAF--YLIAIVFDKLGRLAER 894 (924)
Q Consensus 827 ~~A~a~~~LAr~~la~~--------~~~~~g~~~~Al~~L~~-A~~~f~~l~~-~~~~~~vl--~~lA~l~~~lGd~~~r 894 (924)
++-.-++.||-...... .....|..+.|.+.++. +++.-.++.+ ...-++++ ..+|.-+.-.|....+
T Consensus 961 lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~A 1040 (1189)
T KOG2041|consen 961 LRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDA 1040 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHH
Confidence 77777777774444310 01124666677765553 3333333333 33334444 4566666666666665
Q ss_pred HHHHHH
Q 002424 895 EEAAAL 900 (924)
Q Consensus 895 ~~aa~~ 900 (924)
-..+-+
T Consensus 1041 l~Tal~ 1046 (1189)
T KOG2041|consen 1041 LQTALI 1046 (1189)
T ss_pred HHHHhh
Confidence 554433
|
|
| >PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway | Back alignment and domain information |
|---|
Probab=90.98 E-value=2.6 Score=55.75 Aligned_cols=149 Identities=15% Similarity=-0.016 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC--------------------
Q 002424 744 VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN-------------------- 803 (924)
Q Consensus 744 ~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~-------------------- 803 (924)
+...|....+|..++.+|++..|+.++.+|+.+++..+|..+.|.|+=.++-+..-++..
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~ 318 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST 318 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence 455788889999999999999999999999999999999999999998887554422211
Q ss_pred -----------------------------------------hHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcC
Q 002424 804 -----------------------------------------HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSD 842 (924)
Q Consensus 804 -----------------------------------------~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~ 842 (924)
.+++|+.+|.++.....+.-.....+.+..-+++.+.+.
T Consensus 319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~ 398 (1185)
T PF08626_consen 319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ 398 (1185)
T ss_pred CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence 235566666666421111112222223333333333331
Q ss_pred C--------------C-CCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHH
Q 002424 843 P--------------S-FSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAE 893 (924)
Q Consensus 843 ~--------------~-~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~ 893 (924)
. . .... ...++.+++.+|+..--..=....++.++..+|.+|..+|-...
T Consensus 399 ~~~~~l~~iV~~~~~~~~~~~-~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK 463 (1185)
T PF08626_consen 399 HLSDNLDHIVKRPLTPTPNIS-SRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRK 463 (1185)
T ss_pred hcccchhhhhccccccccCCC-CHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHH
Confidence 1 0 0001 56688889999988665545688889999999999999997654
|
To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.93 E-value=3.3 Score=45.18 Aligned_cols=141 Identities=21% Similarity=0.082 Sum_probs=87.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
.-.+..|++.+|..++.+++...+ + ..++...++++++..|+.++|...+...=.. ........+..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~-------~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-----~~~~~~~~l~a 208 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAP-------E-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-----AQDKAAHGLQA 208 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCc-------c-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-----chhhHHHHHHH
Confidence 455789999999999999998633 2 2588899999999999999999999864221 11111111111
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
.-.++.+..........- .-+.. +..-..+.+.||..+...|+. ++|+++|-.+|+.=+...+-..+-+..
T Consensus 209 ~i~ll~qaa~~~~~~~l~----~~~aa---dPdd~~aa~~lA~~~~~~g~~--e~Ale~Ll~~l~~d~~~~d~~~Rk~ll 279 (304)
T COG3118 209 QIELLEQAAATPEIQDLQ----RRLAA---DPDDVEAALALADQLHLVGRN--EAALEHLLALLRRDRGFEDGEARKTLL 279 (304)
T ss_pred HHHHHHHHhcCCCHHHHH----HHHHh---CCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 112222222222111111 11111 111124456699999999999 999999999988876666644444443
Q ss_pred HHH
Q 002424 833 IAE 835 (924)
Q Consensus 833 ~~L 835 (924)
..+
T Consensus 280 e~f 282 (304)
T COG3118 280 ELF 282 (304)
T ss_pred HHH
Confidence 333
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.66 E-value=24 Score=38.01 Aligned_cols=257 Identities=14% Similarity=0.009 Sum_probs=151.6
Q ss_pred ccCHHHHHHHHHHHHHHhhccCchHHHHHH-HhhHHHHHHHcCCHHHHHHHHHHHhhhhhc-cCCCCcchHHHHHHHHHH
Q 002424 638 FKGYKEAFSALKIAEEKFLSVSKSRILLLK-LQLLHERSLHRGHLKLAQKVCDELGVMASS-VTGVDMDLKTEASLRHAR 715 (924)
Q Consensus 638 ~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~-l~l~~~~al~~G~~~~A~~~l~~ll~l~~~-~~~~D~~~~a~a~~~~a~ 715 (924)
..+.++|+.-++..++.-++-+. |..+ +-......++.|+|.+-.+.+.+++....+ +..+- .-.+.+..-.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKge---WGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNy---SEKsIN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGE---WGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNY---SEKSINSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccch---hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHH
Confidence 34688888888877766443333 4332 222226888999999999999999986432 22111 1112222222
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHH--------HhCCcHHHH
Q 002424 716 TLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ--------LLNLDLLKA 787 (924)
Q Consensus 716 ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~--------~~g~~~~~A 787 (924)
+-....+.+--.+.++..+...+.....+.-+..-.-+|.+|...|++.+-...+.+--.-|+ +-|-+.++.
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 222222333233444444443333333333345566678888888888665544444333332 223344444
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 002424 788 SATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 867 (924)
Q Consensus 788 ~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~ 867 (924)
.|+- -.++-..-.. .+-..+++++|.+--....+..-+...-+=|++|++ .|.+++|---+=+|+.-|..
T Consensus 194 YAlE--IQmYT~qKnN--KkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlr------eg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 194 YALE--IQMYTEQKNN--KKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLR------EGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred HhhH--hhhhhhhccc--HHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccc------cchHHHHHhHHHHHHhcccc
Confidence 4433 2233344444 556677888888877778888888887777899999 89999998888889999988
Q ss_pred hcCHHH-HHHHHHHHHHHHHhcCC----HHHHH-----HHHHHHHHHHHhhhc
Q 002424 868 LEDHEL-AAEAFYLIAIVFDKLGR----LAERE-----EAAALFKEYVLALEN 910 (924)
Q Consensus 868 l~~~~~-~~~vl~~lA~l~~~lGd----~~~r~-----~aa~~f~~l~~~~~~ 910 (924)
-|.|++ .|--+..+|...-..|- ..++. .-.-....+..+|||
T Consensus 264 sGspRRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~ 316 (440)
T KOG1464|consen 264 SGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQN 316 (440)
T ss_pred cCCcchhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhc
Confidence 887655 45555556665555552 22211 133446677777777
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.65 E-value=3.9 Score=52.65 Aligned_cols=136 Identities=11% Similarity=0.079 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++-.|.-.|...+.|++|.++|+...+.|. .....|.... ...+++.+-.+|+.++.+++.-.+...
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~----~fLl~~ne~~aa~~lL~rAL~~lPk~e----- 1598 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYA----DFLLRQNEAEAARELLKRALKSLPKQE----- 1598 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHH----HHHhcccHHHHHHHHHHHHHhhcchhh-----
Confidence 35667788888899999999999999999998 3445677654 566788888999999999988544322
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~ 778 (924)
..+...--|.+-...||.+.+...++..+..+ .-+.++|+....--.+.|+..-.+.+++|++.+..
T Consensus 1599 -Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ay------PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1599 -HVEFISKFAQLEFKYGDAERGRTLFEGLLSAY------PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred -hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC------ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 56777788899999999999999999888743 22356677666777789999999999998887754
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.40 E-value=5.3 Score=42.83 Aligned_cols=134 Identities=13% Similarity=-0.016 Sum_probs=105.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|+|.-....+..+... |++........++.+-+..||-..|-..+++...............-++..
T Consensus 185 ~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 185 NCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4667789999999988888773 666677888899999999999999999999887777777777888999999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
++.+|..+.++..|...+.+++.. .++. +.+.++-|.+++-+|+. ..|++.+++++|++-.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~----D~~~--~~a~NnKALcllYlg~l--~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRM----DPRN--AVANNNKALCLLYLGKL--KDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheecccchHHHHHHHhhcccc----CCCc--hhhhchHHHHHHHHHHH--HHHHHHHHHHhccCCc
Confidence 999999999999887777655433 2222 23344455555568998 9999999999988643
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.14 E-value=10 Score=43.06 Aligned_cols=177 Identities=15% Similarity=0.052 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc----hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ----VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~----~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
.+...+.....++...+|.+|.+..+..+.-.. .+++ ...++.+.-++.+|-..|+...-...+..-+..|.-.+
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~-~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASIS-IQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 444445555555677899999998887765221 1222 33467788888899999996655666666677777777
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
+....|...+.|-..++.-+.. ++|-.+.-..- --. ..+-.+.|+.++.+|+.... ++++..|.+++-+|
T Consensus 204 d~e~qavLiN~LLr~yL~n~ly--dqa~~lvsK~~-~pe-~~snne~ARY~yY~GrIkai------qldYssA~~~~~qa 273 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLY--DQADKLVSKSV-YPE-AASNNEWARYLYYLGRIKAI------QLDYSSALEYFLQA 273 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHH--HHHHHHhhccc-Ccc-ccccHHHHHHHHHHhhHHHh------hcchhHHHHHHHHH
Confidence 8889998888888888655554 88888765442 111 22333899999999999998 89999999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHH
Q 002424 862 SEELQVLEDHELAAEAFYLIAIVFDKLGRLAE 893 (924)
Q Consensus 862 ~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~ 893 (924)
..-.-+.....-...+.-.+-.+-.-+|+.++
T Consensus 274 ~rkapq~~alGf~q~v~k~~ivv~ll~geiPe 305 (493)
T KOG2581|consen 274 LRKAPQHAALGFRQQVNKLMIVVELLLGEIPE 305 (493)
T ss_pred HHhCcchhhhhHHHHHHHHHHHHHHHcCCCcc
Confidence 88766544555555555555666667777665
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=90.09 E-value=28 Score=40.55 Aligned_cols=174 Identities=16% Similarity=-0.015 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhH--HHHHHHHHHHHHhcCCh-------hhhHHHHHHHHHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVEN--ASVLLLLAEIHKKSGNA-------VLGIPYALASLSFCQL 779 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~--a~al~~la~i~~~~G~~-------~~Al~~l~~AL~la~~ 779 (924)
...++|++..-.|||+-|...++.+..++. .|..+. +-++=..|....-.|.. .....+++.|......
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~--~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFK--NDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHh--hchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 345788999999999999999998888765 334333 33444444444444433 2445666666666655
Q ss_pred -----hCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH-hhCCHHHHHHHHHHHHHhh--hcCCCC-CCCCC
Q 002424 780 -----LNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL-GHGGLELRARAFIAEAKCL--LSDPSF-SVSQN 850 (924)
Q Consensus 780 -----~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl-~~gd~~~~A~a~~~LAr~~--la~~~~-~~~g~ 850 (924)
...+....++.+..++++..+|.. .+|...+-+....++ ..-.....|..+-.+|.|+ +....+ ....+
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~--~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r 365 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGY--WEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTR 365 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCcc--HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchh
Confidence 345568888999999999999986 666665555555543 1111112666777778888 442111 11223
Q ss_pred hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 002424 851 PEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFD 886 (924)
Q Consensus 851 ~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~ 886 (924)
..++.-++--|-..|.+.+-+....+++..--.+|.
T Consensus 366 ~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 366 FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 455555555566666666666665555555555544
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=90.08 E-value=6 Score=38.49 Aligned_cols=131 Identities=21% Similarity=0.109 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
..++.....+......|+...+.+.+++++.+++ |+....... .. .+... ......
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~--G~~l~~~~~-----------~~---W~~~~--------r~~l~~ 59 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALALYR--GDFLPDLDD-----------EE---WVEPE--------RERLRE 59 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT----SSTTGGGTT-----------ST---THHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC--CCCCCCCCc-----------cH---HHHHH--------HHHHHH
Confidence 4566677778888888999999999998888766 332221110 00 01000 011111
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
....+...++..+...|++ ++|+.+++.++.. ++.. -.++..|-+++.+ .|+...|+..+++....
T Consensus 60 ~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~l~~-----dP~~-E~~~~~lm~~~~~------~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 60 LYLDALERLAEALLEAGDY--EEALRLLQRALAL-----DPYD-EEAYRLLMRALAA------QGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHH-----STT--HHHHHHHHHHHHH------TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCH--HHHHHHHHHHHhc-----CCCC-HHHHHHHHHHHHH------CcCHHHHHHHHHHHHHH
Confidence 2224456688888899998 9999998888765 3332 3356667788998 89999999999999887
Q ss_pred HH-hhcCHHH
Q 002424 865 LQ-VLEDHEL 873 (924)
Q Consensus 865 f~-~l~~~~~ 873 (924)
+. .+|....
T Consensus 126 l~~elg~~Ps 135 (146)
T PF03704_consen 126 LREELGIEPS 135 (146)
T ss_dssp HHHHHS----
T ss_pred HHHHhCcCcC
Confidence 76 4555433
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.66 Score=53.18 Aligned_cols=128 Identities=17% Similarity=0.048 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchh---HHHHHHHHHHHHHhcCChhhhHHHHHHHHH-HHHHhC
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE---NASVLLLLAEIHKKSGNAVLGIPYALASLS-FCQLLN 781 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~---~a~al~~la~i~~~~G~~~~Al~~l~~AL~-la~~~g 781 (924)
...++..++......|+|..|++.+...--.+...|...+ ..-+++++|.||.+.|.|..+.-++..||. .|.+..
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 5688889999999999999999998754322222233222 233678999999999999999999999995 554332
Q ss_pred Cc-----------HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhc
Q 002424 782 LD-----------LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 841 (924)
Q Consensus 782 ~~-----------~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la 841 (924)
.. --..+++.+.|-.++++|+| -.|.+++..+.-......-.|+ .||.|.++
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grP--l~AfqCf~~av~vfh~nPrlWL------RlAEcCim 381 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRP--LLAFQCFQKAVHVFHRNPRLWL------RLAECCIM 381 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCc--HHHHHHHHHHHHHHhcCcHHHH------HHHHHHHH
Confidence 21 23457788999999999999 9999999999888877665444 45665554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.82 E-value=29 Score=40.32 Aligned_cols=200 Identities=14% Similarity=-0.008 Sum_probs=133.0
Q ss_pred HHHccCHHHHHHHHHHHHHHhhccCchHHHH----HHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHH
Q 002424 635 LAVFKGYKEAFSALKIAEEKFLSVSKSRILL----LKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 710 (924)
Q Consensus 635 ~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~----l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~ 710 (924)
....|+-+.-.++++.|....|.....+.|. +-++.+...-+...|...+++.++.++.+.+.- ...-+..+
T Consensus 332 ~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk----kFtFaKiW 407 (677)
T KOG1915|consen 332 EESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK----KFTFAKIW 407 (677)
T ss_pred HHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc----cchHHHHH
Confidence 3445888899999999998877765544442 233322245567889999999999999975532 23356788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASAT 790 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al 790 (924)
+.-|...+++-+...|...+..++-.|-....-.+-+ ++-.+.+++++..-++.+=|... ..-..+.
T Consensus 408 lmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YI-------elElqL~efDRcRkLYEkfle~~------Pe~c~~W 474 (677)
T KOG1915|consen 408 LMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYI-------ELELQLREFDRCRKLYEKFLEFS------PENCYAW 474 (677)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHH-------HHHHHHhhHHHHHHHHHHHHhcC------hHhhHHH
Confidence 8889999999999999999999887665332222222 23346677788877777665543 3445677
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 791 LTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 791 ~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
...|++-..+|+. ++|+.+++-++.+-. ..-+.+--.+|... -.+ .|..++|...+++-++
T Consensus 475 ~kyaElE~~Lgdt--dRaRaifelAi~qp~-ldmpellwkaYIdF---Ei~------~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 475 SKYAELETSLGDT--DRARAIFELAISQPA-LDMPELLWKAYIDF---EIE------EGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHHhhhH--HHHHHHHHHHhcCcc-cccHHHHHHHhhhh---hhh------cchHHHHHHHHHHHHH
Confidence 7889999999999 999999998876532 22333333333311 111 5666666666665443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=89.76 E-value=0.84 Score=35.35 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHH
Q 002424 790 TLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAK 837 (924)
Q Consensus 790 l~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr 837 (924)
.+.||.+|..+|+. +.|+.+|++++ ..|+...+..|..+|.+
T Consensus 2 kLdLA~ayie~Gd~--e~Ar~lL~evl----~~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 2 KLDLARAYIEMGDL--EGARELLEEVI----EEGDEAQRQEARALLAQ 43 (44)
T ss_pred chHHHHHHHHcCCh--HHHHHHHHHHH----HcCCHHHHHHHHHHHhc
Confidence 46799999999999 99999999997 47899999998877764
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.76 E-value=6.2 Score=40.64 Aligned_cols=101 Identities=18% Similarity=0.100 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 786 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 786 (924)
..+.+.++......|++++|...+++++.. ..|.....-+-+.+|.|....|.++.|+..+. ....+.+.
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~-------t~~~~~w~ 158 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLD-------TIKEESWA 158 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-------ccccccHH
Confidence 345567788888999999999999988862 35666667788899999999999998887764 33334445
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 787 ASATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 787 A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
++.-..-|++++..|+. .+|+.-++.++..-
T Consensus 159 ~~~~elrGDill~kg~k--~~Ar~ay~kAl~~~ 189 (207)
T COG2976 159 AIVAELRGDILLAKGDK--QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHcCch--HHHHHHHHHHHHcc
Confidence 55556689999999999 99999999998764
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.72 E-value=0.7 Score=34.27 Aligned_cols=33 Identities=27% Similarity=0.110 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLS 657 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~ 657 (924)
+.++.+||..+..+|+|++|..+++++.+....
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 567899999999999999999999998887554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.72 E-value=35 Score=37.38 Aligned_cols=115 Identities=22% Similarity=0.172 Sum_probs=75.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHhhccC---c-h-H---HHHHHHhhHHHHHHHcCCHHHHHHH
Q 002424 617 DGSSLSDAALAHVKLIQHLAVFK-GYKEAFSALKIAEEKFLSVS---K-S-R---ILLLKLQLLHERSLHRGHLKLAQKV 687 (924)
Q Consensus 617 ~~~~~d~~~~a~~~La~~~a~~G-~y~eA~~~L~~a~~~f~~~~---~-~-~---~~~l~l~l~~~~al~~G~~~~A~~~ 687 (924)
+....+..+..+.+.|..+...+ +|++|...|++|.+.+...+ . + . .....++.....++.-+.++....+
T Consensus 27 ~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka 106 (278)
T PF08631_consen 27 DPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKA 106 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 44456788899999999999999 99999999999999874411 1 1 1 1111122222556666666555443
Q ss_pred HHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 688 CDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 688 l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
..-+..+-.+.+ + .+........++...++.+++.+.+.+++..
T Consensus 107 ~~~l~~l~~e~~--~---~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 107 LNALRLLESEYG--N---KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHhCC--C---CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 333222212222 3 4566666777777799999999999988873
|
It is also involved in sporulation []. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.60 E-value=1.6 Score=44.77 Aligned_cols=95 Identities=14% Similarity=0.030 Sum_probs=79.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
.-.+..|+|.+|..-|..++.+.+.... ..+..++.+.|-.++.++.++.|++-+..++++ +. ...+++..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~---e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel----~p--ty~kAl~R 173 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTST---EERSILYSNRAAALIKLRKWESAIEDCSKAIEL----NP--TYEKALER 173 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccH---HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc----Cc--hhHHHHHH
Confidence 3567899999999999999998776552 457788889999999999999999999999875 22 23567778
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
+|.+|-+...|+.|+..+.+-+.+
T Consensus 174 RAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 174 RAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHh
Confidence 999999999999999999877665
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=89.53 E-value=19 Score=34.14 Aligned_cols=114 Identities=17% Similarity=0.056 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccch----h--HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV----E--NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~----~--~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
+...+..++-.+.-|-|++|..-+..+++..+...... . -+-++-.++..+...|+|+.++.-..+||....+.
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 44455567777889999999999999999988654331 1 24467788999999999999999999999988665
Q ss_pred CCcH-----HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh
Q 002424 781 NLDL-----LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH 822 (924)
Q Consensus 781 g~~~-----~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~ 822 (924)
|.-. +-..+.+.-|..+..+|+. ++|+.-++.+-+++-+.
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~--~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRK--EEALKEFRMAGEMIAER 133 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHHHH-
T ss_pred cccccccchhHHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHH
Confidence 5421 1223445567777789999 99999999888887543
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.45 E-value=11 Score=41.04 Aligned_cols=145 Identities=14% Similarity=0.027 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC
Q 002424 724 SEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN 803 (924)
Q Consensus 724 ~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~ 803 (924)
++-++-+++.++..++.........++.++|+-|.+.++-+.|+..+.+.++-+-.+|...-......+||.++ |+.
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y---~d~ 168 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIY---GDR 168 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhh---ccH
Confidence 34455555555555555545667889999999999999999999999999999999998877777777788775 444
Q ss_pred hHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 002424 804 HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFY 879 (924)
Q Consensus 804 ~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~ 879 (924)
.-..+.+|.+-|++...||-+.+-+.-...|--.++ ...+.+|...|-..+..|++.+-..-..-+.|
T Consensus 169 --~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~------~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrY 236 (412)
T COG5187 169 --KVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMM------RRNFKEAAILLSDILPTFESSELISYSRAVRY 236 (412)
T ss_pred --HHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHH------HHhhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 445567777778888888877666654444433333 34556666677777777776665554444444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=89.37 E-value=11 Score=43.80 Aligned_cols=111 Identities=8% Similarity=0.061 Sum_probs=73.4
Q ss_pred HHhhcCCCCChHHHHHHHHHHHHHHHHc---cC------HHHHHHHHHHHHHHhhccCchH-HHHHHHhhHHHHHHHcCC
Q 002424 611 YATCFSDGSSLSDAALAHVKLIQHLAVF---KG------YKEAFSALKIAEEKFLSVSKSR-ILLLKLQLLHERSLHRGH 680 (924)
Q Consensus 611 ~~~~~~~~~~~d~~~~a~~~La~~~a~~---G~------y~eA~~~L~~a~~~f~~~~~~~-~~~l~l~l~~~~al~~G~ 680 (924)
+.+|.....-.-+.+.++|-+|.+++.. |- -.+|.++.+.|.++=+ .|.. .+.+. ......|+
T Consensus 281 f~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~--~Da~a~~~~g-----~~~~~~~~ 353 (458)
T PRK11906 281 FDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT--VDGKILAIMG-----LITGLSGQ 353 (458)
T ss_pred HHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC--CCHHHHHHHH-----HHHHhhcc
Confidence 4455533322235577888888777643 22 2334444444443311 1221 23333 45567888
Q ss_pred HHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 681 LKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 681 ~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
++.|...++++..+.+ + .+.+++..|.++...|+.++|.+.+++++++
T Consensus 354 ~~~a~~~f~rA~~L~P-----n---~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 354 AKVSHILFEQAKIHST-----D---IASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred hhhHHHHHHHHhhcCC-----c---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 9999999999999743 2 6788999999999999999999999998874
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.99 E-value=0.94 Score=32.03 Aligned_cols=31 Identities=26% Similarity=0.045 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhh
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 656 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~ 656 (924)
.++..+|.++...|+|++|...++++.++.|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 5678899999999999999999999988766
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=88.89 E-value=11 Score=45.29 Aligned_cols=222 Identities=17% Similarity=0.120 Sum_probs=115.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHH
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 707 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a 707 (924)
+--+|.+++..|+|+-|.+++.++. +|. ..+ ..+-..|+|..|..+...... |+...
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~-~~~-----------dai--~my~k~~kw~da~kla~e~~~---------~e~t~ 824 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD-LFK-----------DAI--DMYGKAGKWEDAFKLAEECHG---------PEATI 824 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc-hhH-----------HHH--HHHhccccHHHHHHHHHHhcC---------chhHH
Confidence 4556777777777777777666543 111 011 233456666666655444321 22244
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHcccchhHH------------HHHHHHHHHHHhcCChhhhHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVA------HSLFCMCYKFNLQVENA------------SVLLLLAEIHKKSGNAVLGIPY 769 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l------~~aL~~~~~~gd~~~~a------------~al~~la~i~~~~G~~~~Al~~ 769 (924)
......++-+-..|+|.+|.+++ ..++..+.+.|.....+ ......|.-+...|+...|..+
T Consensus 825 ~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~ 904 (1636)
T KOG3616|consen 825 SLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEH 904 (1636)
T ss_pred HHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHH
Confidence 44455555556666666665544 12233333222221111 1233444444555555555555
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCC---
Q 002424 770 ALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFS--- 846 (924)
Q Consensus 770 l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~--- 846 (924)
+.+|-+.-.. ..+ -+|-.+++.+..+...-|.....-++.++-|+..-.++.-+
T Consensus 905 flea~d~kaa--------------------vnm---yk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavklln 961 (1636)
T KOG3616|consen 905 FLEAGDFKAA--------------------VNM---YKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLN 961 (1636)
T ss_pred HHhhhhHHHH--------------------HHH---hhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHH
Confidence 5444332110 011 23445566666666666666666666666665544432111
Q ss_pred CCCChHHHHHH------HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 847 VSQNPEAVLDP------LRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 847 ~~g~~~~Al~~------L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
..|-++.++++ ++-|++.. +++...+..+|...+|+.....|..+++-+
T Consensus 962 k~gll~~~id~a~d~~afd~afdla-ri~~k~k~~~vhlk~a~~ledegk~edask 1016 (1636)
T KOG3616|consen 962 KHGLLEAAIDFAADNCAFDFAFDLA-RIAAKDKMGEVHLKLAMFLEDEGKFEDASK 1016 (1636)
T ss_pred hhhhHHHHhhhhhcccchhhHHHHH-HHhhhccCccchhHHhhhhhhccchhhhhH
Confidence 02334444443 33344443 566777778889999999999999888644
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.32 E-value=42 Score=39.68 Aligned_cols=250 Identities=17% Similarity=0.097 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHH-hhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKL-QLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l-~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
.-...-+..+...|+.+.|+...+...+ .+. .++..++. -.+ ......-+|..|-..+..+.... | .
T Consensus 268 ~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~--kQ~~~l~~fE~a-w~~v~~~~~~~aad~~~~L~des------d-W 335 (546)
T KOG3783|consen 268 LWLLMEARILSIKGNSEAAIDMESLSIP--IRM--KQVKSLMVFERA-WLSVGQHQYSRAADSFDLLRDES------D-W 335 (546)
T ss_pred cHHHHHHHHHHHcccHHHHHHHHHhccc--HHH--HHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHhhh------h-h
Confidence 4456667778888995555555443332 111 11222221 111 34456778888888888887742 2 2
Q ss_pred hHHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 705 LKTEASLRHARTL--------LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 705 ~~a~a~~~~a~ll--------~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
..+...+..|-++ ...|+-+.|-...+......+..|-....=+....+++-+...+. .+..
T Consensus 336 S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~--~~~~-------- 405 (546)
T KOG3783|consen 336 SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP--LNAS-------- 405 (546)
T ss_pred hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc--cccc--------
Confidence 2333344443332 223455555554444444333322111111223333333333332 0100
Q ss_pred HHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH-HHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 002424 777 CQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQ-ALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVL 855 (924)
Q Consensus 777 a~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~-aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al 855 (924)
-.-++=...++.+|......-..+..++..+ ..| .+.|..+.+.-++++|-|+.. .|+...|.
T Consensus 406 -------~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~---~~~d~Dd~~lk~lL~g~~lR~------Lg~~~~a~ 469 (546)
T KOG3783|consen 406 -------ILLASPYYELAYFWNGFSRMSKNELEKMRAELENP---KIDDSDDEGLKYLLKGVILRN------LGDSEVAP 469 (546)
T ss_pred -------ccccchHHHHHHHHhhcccCChhhHHHHHHHHhcc---CCCCchHHHHHHHHHHHHHHH------cCCHHHHH
Confidence 0111112346666654333211333321111 112 223778899999999999999 89999999
Q ss_pred HHHHHHHHH-HHhhcCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHhhhccCC
Q 002424 856 DPLRQASEE-LQVLEDHELAAEAFYLIAIVFDKLGR-LAEREEAAALFKEYVLALENENR 913 (924)
Q Consensus 856 ~~L~~A~~~-f~~l~~~~~~~~vl~~lA~l~~~lGd-~~~r~~aa~~f~~l~~~~~~~~~ 913 (924)
.++..+.+. ...-++++-.--++|.+|.++...|- ..+++......+.+..-|+=||+
T Consensus 470 ~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~lenR 529 (546)
T KOG3783|consen 470 KCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYELENR 529 (546)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccchhhH
Confidence 998877754 55778899999999999999999999 88888888888888877766654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=88.11 E-value=23 Score=40.49 Aligned_cols=168 Identities=14% Similarity=0.095 Sum_probs=101.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcccchhHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLA---ANQFSEAAAVAHSLFCMCYKFNLQVENASV 749 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~---~G~~~eAl~~l~~aL~~~~~~gd~~~~a~a 749 (924)
.-++.-.+|+.-..+++.+..+ +.. |......+....|..+.+ .|+.++|++.+..++. .......++
T Consensus 149 lSyRdiqdydamI~Lve~l~~~-p~~---~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-----~~~~~~~d~ 219 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEAL-PTC---DVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-----SDENPDPDT 219 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhcc-Ccc---chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-----ccCCCChHH
Confidence 3556678899999988888765 211 222356778888999999 9999999999998766 344455678
Q ss_pred HHHHHHHHH----hcC-----ChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH----
Q 002424 750 LLLLAEIHK----KSG-----NAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQAL---- 816 (924)
Q Consensus 750 l~~la~i~~----~~G-----~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aL---- 816 (924)
+.+.|.||- .++ ...+|+..+.++-.+- ..+ ..-.+++.++...|.. .+...-++++-
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~----~~~---Y~GIN~AtLL~~~g~~--~~~~~el~~i~~~l~ 290 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE----PDY---YSGINAATLLMLAGHD--FETSEELRKIGVKLS 290 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC----ccc---cchHHHHHHHHHcCCc--ccchHHHHHHHHHHH
Confidence 888888883 221 2344555555554443 122 3334556666667765 33332233332
Q ss_pred hHHHhhCCHHHHHHH--HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 817 PLILGHGGLELRARA--FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 817 p~vl~~gd~~~~A~a--~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
..+.+.|+....... +-+++.+.+. .|++++|+.++++++..
T Consensus 291 ~llg~kg~~~~~~dYWd~ATl~Ea~vL------~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 291 SLLGRKGSLEKMQDYWDVATLLEASVL------AGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHhhccccccccHHHHHHHHHHHHH------cCCHHHHHHHHHHHhhc
Confidence 222223322222211 2234566666 79999999999998765
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.98 E-value=1.2 Score=31.69 Aligned_cols=32 Identities=25% Similarity=0.049 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhh
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 656 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~ 656 (924)
+.++.++|..+..+|+|++|+..+++++++-|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 46789999999999999999999999988755
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=87.91 E-value=28 Score=40.86 Aligned_cols=65 Identities=15% Similarity=-0.002 Sum_probs=47.0
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHH
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYA 770 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l 770 (924)
|......+..+++.++.+.|+..||++++.+++++.. ......+.-++-++++..+++..+...+
T Consensus 254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p----~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP----NLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC----ccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 4444578889999999999999999999999987532 2233445666666777777776665443
|
The molecular function of this protein is uncertain. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=87.81 E-value=6.1 Score=42.61 Aligned_cols=89 Identities=11% Similarity=-0.065 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcC
Q 002424 722 QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFG 801 (924)
Q Consensus 722 ~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG 801 (924)
.....+++++.+...+...+..+....+...+|.-|...|++++|+.++..+....++-|=..+...++..|..+...+|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 34456788888888888888888999999999999999999999999999998888999999999999999999999999
Q ss_pred CChHHHHHHHH
Q 002424 802 PNHAKMASNLI 812 (924)
Q Consensus 802 ~~~~~~Al~lL 812 (924)
+. +..+...
T Consensus 233 ~~--~~~l~~~ 241 (247)
T PF11817_consen 233 DV--EDYLTTS 241 (247)
T ss_pred CH--HHHHHHH
Confidence 87 6555543
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.29 E-value=7.2 Score=50.24 Aligned_cols=186 Identities=15% Similarity=-0.041 Sum_probs=134.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--cccchhHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK--FNLQVENASVL 750 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~--~gd~~~~a~al 750 (924)
...+..|.|.+|.+ +.+.+.++..+-..-..-.+.++..++.++.+.|++++|+..-..+...+.+ .-|....+...
T Consensus 940 q~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 45677888888888 6666655442211111115788889999999999999999998887665554 23455668888
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHH-HhCC-cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCC--HH
Q 002424 751 LLLAEIHKKSGNAVLGIPYALASLSFCQ-LLNL-DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG--LE 826 (924)
Q Consensus 751 ~~la~i~~~~G~~~~Al~~l~~AL~la~-~~g~-~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd--~~ 826 (924)
..++.......+...|+..+.+++.+-- ..|- ...-+..-.++..+.+.++.. +.|+++++.++........ ..
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~--d~al~~le~A~a~~~~v~g~~~l 1096 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEA--DTALRYLESALAKNKKVLGPKEL 1096 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHH--HHHHHHHHHHHHHHhhhcCccch
Confidence 8999888888899999988888877652 2222 334455556777777666665 9999999999997755533 23
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 002424 827 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 867 (924)
Q Consensus 827 ~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~ 867 (924)
.-|..+..+|+.+-+ .++...|+.+-+.++.+|..
T Consensus 1097 ~~~~~~~~~a~l~~s------~~dfr~al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1097 ETALSYHALARLFES------MKDFRNALEHEKVTYGIYKE 1131 (1236)
T ss_pred hhhhHHHHHHHHHhh------hHHHHHHHHHHhhHHHHHHH
Confidence 345556677888877 78888999999999998874
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=87.28 E-value=4 Score=43.08 Aligned_cols=77 Identities=13% Similarity=0.075 Sum_probs=60.6
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-------ccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHH
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF-------NLQVENASVLLLLAEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~-------gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL 774 (924)
++.-.+...+++|+++...|+.+.....++.++..+.+. .....+..++.++|+++.+.|++++|...+.+.+
T Consensus 113 ~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 113 KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444578889999999999999888888888887655531 1234568899999999999999999999887766
Q ss_pred HHHH
Q 002424 775 SFCQ 778 (924)
Q Consensus 775 ~la~ 778 (924)
..-.
T Consensus 193 ~~~~ 196 (214)
T PF09986_consen 193 GSKK 196 (214)
T ss_pred cCCC
Confidence 5543
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=87.00 E-value=5.4 Score=34.94 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
+.-....|.-+....+..+|+...+.++.. ..++...++++-.+..+|...|.+...+.+..+-+.+|++..++
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k---~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEK---ITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 344455566667888999999999999873 34567889999999999999999999999999999999887654
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.83 E-value=10 Score=40.72 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~ 735 (924)
.+.+++|.+++..|+...|++.+++++.
T Consensus 287 ~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 287 VANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445555555555555554444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.82 E-value=6.7 Score=39.23 Aligned_cols=89 Identities=13% Similarity=-0.056 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
++....++..+...-...++.+++..+|....-.-|..... .+. ...+++.+|+|.+|..+++.+..
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~--~~~----~~~l~i~r~~w~dA~rlLr~l~~------- 72 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPEL--DLF----DGWLHIVRGDWDDALRLLRELEE------- 72 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHH--HHH----HHHHHHHhCCHHHHHHHHHHHhc-------
Confidence 34556677778888888899999998888665544432221 111 12688899999999999999865
Q ss_pred CCcchHHHHHHHHHHHHHHcCCH
Q 002424 701 VDMDLKTEASLRHARTLLAANQF 723 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~G~~ 723 (924)
++.....+...++.++..+||.
T Consensus 73 -~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 73 -RAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred -cCCCChHHHHHHHHHHHHcCCh
Confidence 3333567777788888777764
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.76 E-value=1.3 Score=31.27 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 748 SVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 748 ~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
.++..+|.++...|++.+|+.++.+|+.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34555666666666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.48 E-value=81 Score=37.79 Aligned_cols=274 Identities=13% Similarity=0.039 Sum_probs=155.7
Q ss_pred hhhhhHHHHHHHHHHhhCchHHHHh-HHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHH--HHHHHHHHHHHhhcc
Q 002424 582 QLVGSSYLLRATAWEAYGSAPLTRV-NTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKE--AFSALKIAEEKFLSV 658 (924)
Q Consensus 582 ~l~g~~~~l~a~~W~~~G~~~ls~~-~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~e--A~~~L~~a~~~f~~~ 658 (924)
.-+......-+-+....|.+.=+.- +..+.-....|.. -.+++.+||...-- ...|.+ ++...+.-...+.+.
T Consensus 221 ~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~---~~Av~~NNLva~~~-d~~~~d~~~l~~k~~~~~~l~~~ 296 (652)
T KOG2376|consen 221 EELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP---SLAVAVNNLVALSK-DQNYFDGDLLKSKKSQVFKLAEF 296 (652)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch---HHHHHhcchhhhcc-ccccCchHHHHHHHHHHHHhHHH
Confidence 3445556666777788888765544 6665555555554 45666666654322 222322 111111111111111
Q ss_pred Cch----HHH-HHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002424 659 SKS----RIL-LLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSL 733 (924)
Q Consensus 659 ~~~----~~~-~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~a 733 (924)
... ..| .+..+.. ...++.+.-+.++++..++-.- -|.-.+.++...+...... .+..|.+.+.+.
T Consensus 297 ~l~~Ls~~qk~~i~~N~~-lL~l~tnk~~q~r~~~a~lp~~-------~p~~~~~~ll~~~t~~~~~-~~~ka~e~L~~~ 367 (652)
T KOG2376|consen 297 LLSKLSKKQKQAIYRNNA-LLALFTNKMDQVRELSASLPGM-------SPESLFPILLQEATKVREK-KHKKAIELLLQF 367 (652)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHhCCcc-------CchHHHHHHHHHHHHHHHH-HHhhhHHHHHHH
Confidence 111 111 1222222 5667788888887777665442 2333455555544444444 677788877766
Q ss_pred HHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 002424 734 FCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL--NLDLLKASATLTLAELWLSFGPNHAKMASNL 811 (924)
Q Consensus 734 L~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~--g~~~~~A~al~~La~l~~~lG~~~~~~Al~l 811 (924)
.. +.+.....+++.+++++...|++..|+..+.-.+ .++.+ ..-...-.+...+-.++...+.. .-|..+
T Consensus 368 ~~-----~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~-~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~--~~a~~v 439 (652)
T KOG2376|consen 368 AD-----GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL-ESWKSSILEAKHLPGTVGAIVALYYKIKDN--DSASAV 439 (652)
T ss_pred hc-----cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhhhhhhhhccChhHHHHHHHHHHhccCC--ccHHHH
Confidence 54 7778889999999999999999999998887433 22211 11111112233355566778887 789999
Q ss_pred HHHHHhHHHhhCCHH-HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 002424 812 IQQALPLILGHGGLE-LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKL 888 (924)
Q Consensus 812 Le~aLp~vl~~gd~~-~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~l 888 (924)
+.+++-.++..-+.. ..-..+..+|...+. .|.-.+|...|++-...+ ..-.+++..+-.+|..+
T Consensus 440 l~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr------~G~~~ea~s~leel~k~n------~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 440 LDSAIKWWRKQQTGSIALLSLMREAAEFKLR------HGNEEEASSLLEELVKFN------PNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHHHHHHHhcccchHHHhHHHHHhHHHHh------cCchHHHHHHHHHHHHhC------CchHHHHHHHHHHHHhc
Confidence 999999887664433 222233344555555 577888888888766544 23344555555555544
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.41 E-value=27 Score=38.75 Aligned_cols=160 Identities=14% Similarity=0.041 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChH
Q 002424 726 AAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHA 805 (924)
Q Consensus 726 Al~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~ 805 (924)
=++-+++.++.+.+.--......+++.+|+-|.+.|+-+.|+..+.+..+-+-..|...-.--...+||..+ ++.
T Consensus 83 ki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy---~D~-- 157 (393)
T KOG0687|consen 83 KIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFY---LDH-- 157 (393)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhh---ccH--
Confidence 344455555554443223444679999999999999999999999999988888888877777777788766 333
Q ss_pred HHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 002424 806 KMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVF 885 (924)
Q Consensus 806 ~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~ 885 (924)
.---+.++.+-+++.+.||-..+-+.-..-|--.++ ..+..+|...+-.++..|.+.+-..-..-+.|..-.-.
T Consensus 158 ~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~ms------vR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~ 231 (393)
T KOG0687|consen 158 DLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMS------VRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGL 231 (393)
T ss_pred HHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHH------HHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhh
Confidence 556677888888899999977777664444433334 45677788888888888888887777777777766666
Q ss_pred HhcCCHHHHHH
Q 002424 886 DKLGRLAEREE 896 (924)
Q Consensus 886 ~~lGd~~~r~~ 896 (924)
-.+.+++.+.+
T Consensus 232 i~leR~dlktK 242 (393)
T KOG0687|consen 232 IALERVDLKTK 242 (393)
T ss_pred heeccchHHhh
Confidence 66666665544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.37 E-value=40 Score=43.38 Aligned_cols=77 Identities=14% Similarity=0.032 Sum_probs=45.8
Q ss_pred HHHHHhcCChhhhHHHHH------HHHHHHHHhCCcHHHH--HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH
Q 002424 754 AEIHKKSGNAVLGIPYAL------ASLSFCQLLNLDLLKA--SATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL 825 (924)
Q Consensus 754 a~i~~~~G~~~~Al~~l~------~AL~la~~~g~~~~~A--~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~ 825 (924)
|..|..+|+.++|+..+. +|+.++.+......+. .|.. |+..+...|++ -+|-+++.+.+-...+.=..
T Consensus 959 al~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~-L~s~L~e~~kh--~eAa~il~e~~sd~~~av~l 1035 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEE-LVSRLVEQRKH--YEAAKILLEYLSDPEEAVAL 1035 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHH-HHHHHHHcccc--hhHHHHHHHHhcCHHHHHHH
Confidence 444566777777776663 5677776554443333 3344 67777778887 67777776666555544444
Q ss_pred HHHHHHHH
Q 002424 826 ELRARAFI 833 (924)
Q Consensus 826 ~~~A~a~~ 833 (924)
+.+|..|.
T Consensus 1036 l~ka~~~~ 1043 (1265)
T KOG1920|consen 1036 LCKAKEWE 1043 (1265)
T ss_pred HhhHhHHH
Confidence 44444443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.25 E-value=41 Score=34.19 Aligned_cols=166 Identities=17% Similarity=0.137 Sum_probs=103.9
Q ss_pred HHHHHHhhCchHHHHhHHHHHHh------hcCCCC----ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc
Q 002424 591 RATAWEAYGSAPLTRVNTLIYAT------CFSDGS----SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK 660 (924)
Q Consensus 591 ~a~~W~~~G~~~ls~~~~~~~~~------~~~~~~----~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~ 660 (924)
...+|.++|...+.-...-+.-. .|.+.+ +.|... -+.-++..|..++|++-|.....- .++.
T Consensus 19 ~~~lw~rfgp~v~giailvVlGtag~~gy~yw~~s~as~sgd~fl-----aAL~lA~~~k~d~Alaaf~~lekt--g~g~ 91 (221)
T COG4649 19 AKTLWKRFGPAVIGIAILVVLGTAGYVGYTYWQTSRASKSGDAFL-----AALKLAQENKTDDALAAFTDLEKT--GYGS 91 (221)
T ss_pred HHHHHHHcccHHHHHHHHHHhccccceeeehhcccccccchHHHH-----HHHHHHHcCCchHHHHHHHHHHhc--CCCc
Confidence 45799999987766553322211 111111 222222 234456779999999998865542 1111
Q ss_pred hHHHHH-HHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 002424 661 SRILLL-KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK 739 (924)
Q Consensus 661 ~~~~~l-~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~ 739 (924)
+-.+ .++.. ......|+-.+|...+..+..-.+.. .-++-.+.++-+.+++..|-|+.=...++.+-.
T Consensus 92 --YpvLA~mr~a-t~~a~kgdta~AV~aFdeia~dt~~P----~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~---- 160 (221)
T COG4649 92 --YPVLARMRAA-TLLAQKGDTAAAVAAFDEIAADTSIP----QIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG---- 160 (221)
T ss_pred --chHHHHHHHH-HHHhhcccHHHHHHHHHHHhccCCCc----chhhHHHHHHHHHHHhccccHHHHHHHhhhccC----
Confidence 1111 12222 56678999999999999887632211 112457888999999999999988877775432
Q ss_pred cccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHH
Q 002424 740 FNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLS 775 (924)
Q Consensus 740 ~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~ 775 (924)
.....+..+.-.+|..-.+.|++..|...+.+-..
T Consensus 161 -d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 161 -DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred -CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 22234444555677778899999999988875444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.22 E-value=25 Score=36.87 Aligned_cols=220 Identities=15% Similarity=-0.022 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH
Q 002424 586 SSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL 665 (924)
Q Consensus 586 ~~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~ 665 (924)
..+-.++.+++.+|...+++.--.-.+.-.- +...+++-||..+...|+|+.|.+.++...+.=|...- ..
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P------~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y---a~ 136 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRP------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY---AH 136 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCC------CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH---HH
Confidence 3466788999999999999884321222222 23477899999999999999999999987776443222 22
Q ss_pred HHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-cch
Q 002424 666 LKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN-LQV 744 (924)
Q Consensus 666 l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~g-d~~ 744 (924)
+.-. .....-|++.-|.+-+.+.-. .++.||........+. ..-++.+|..-+.+--. ... ..+
T Consensus 137 lNRg---i~~YY~gR~~LAq~d~~~fYQ----~D~~DPfR~LWLYl~E-----~k~dP~~A~tnL~qR~~---~~d~e~W 201 (297)
T COG4785 137 LNRG---IALYYGGRYKLAQDDLLAFYQ----DDPNDPFRSLWLYLNE-----QKLDPKQAKTNLKQRAE---KSDKEQW 201 (297)
T ss_pred hccc---eeeeecCchHhhHHHHHHHHh----cCCCChHHHHHHHHHH-----hhCCHHHHHHHHHHHHH---hccHhhh
Confidence 2211 123468999999887776654 2445654332222221 23467777755443222 222 223
Q ss_pred hHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhC
Q 002424 745 ENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ-LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG 823 (924)
Q Consensus 745 ~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~-~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~g 823 (924)
+---+...+|.|--+ ....++.+-++ ....--...++..-||..++..|.. .+|..++.-++.-- .-
T Consensus 202 G~~iV~~yLgkiS~e--------~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~--~~A~~LfKLaiann--Vy 269 (297)
T COG4785 202 GWNIVEFYLGKISEE--------TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDL--DEATALFKLAVANN--VY 269 (297)
T ss_pred hHHHHHHHHhhccHH--------HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHHHHh--HH
Confidence 333345555543321 11112222221 0111123346678899999999998 99999988766532 22
Q ss_pred CHHHHHHHHHHHHHhhhc
Q 002424 824 GLELRARAFIAEAKCLLS 841 (924)
Q Consensus 824 d~~~~A~a~~~LAr~~la 841 (924)
+...---|++.|++..-.
T Consensus 270 nfVE~RyA~~EL~~l~q~ 287 (297)
T COG4785 270 NFVEHRYALLELSLLGQD 287 (297)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 333444566666665544
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=86.21 E-value=4.2 Score=35.60 Aligned_cols=66 Identities=9% Similarity=-0.011 Sum_probs=56.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ 743 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~ 743 (924)
.+..+..+..+|......++.-.+ ++...+.++-.++..+...|+|.+++++.-..+.++++..++
T Consensus 14 lkLY~~~~~~~Al~~W~~aL~k~~-----~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 14 LKLYHQNETQQALQKWRKALEKIT-----DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHhccchHHHHHHHHHHHHhhcC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 345688899999999999887422 666799999999999999999999999999999999887765
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.99 E-value=7.6 Score=38.33 Aligned_cols=87 Identities=11% Similarity=-0.050 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
....++..+.......++.+++..+|....-.-|+...-. + +...+++.+|+|.+|..+++.+.. +
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d--~----~dg~l~i~rg~w~eA~rvlr~l~~--------~ 73 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELD--M----FDGWLLIARGNYDEAARILRELLS--------S 73 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccc--h----hHHHHHHHcCCHHHHHHHHHhhhc--------c
Confidence 4455566666666678999999998886665555433311 1 112678899999999999999876 3
Q ss_pred cchHHHHHHHHHHHHHHcCCH
Q 002424 703 MDLKTEASLRHARTLLAANQF 723 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~ 723 (924)
......+.-.++.++..+||.
T Consensus 74 ~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 74 AGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred CCCchHHHHHHHHHHHhcCCh
Confidence 333567777788888888764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.87 E-value=1.1 Score=31.28 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 002424 372 IALLCLGMMHFHFGHPKQALDVLTEAVCL 400 (924)
Q Consensus 372 yall~la~~h~~fg~~~~A~~~l~Eai~~ 400 (924)
+|++++|.++...|++++|+..+++.|..
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 48999999999999999999999998763
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.73 E-value=1.3 Score=31.04 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhc
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLS 657 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~ 657 (924)
++.++|.++...|++++|...+++..+.||.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5778999999999999999999999998884
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.99 E-value=1.9 Score=30.56 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Q 002424 748 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778 (924)
Q Consensus 748 ~al~~la~i~~~~G~~~~Al~~l~~AL~la~ 778 (924)
+++..+|.++...|+++.|+..+.+|+++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566777777777777777777777776653
|
... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.73 E-value=13 Score=39.66 Aligned_cols=113 Identities=19% Similarity=0.093 Sum_probs=64.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHH
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 707 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a 707 (924)
+..-|.-+..+|+|.||...+.+|......+.. + -.-|+. +.+ ++.. ...
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~l------k--------EkP~e~----eW~-eLdk-----------~~t 230 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQL------K--------EKPGEP----EWL-ELDK-----------MIT 230 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHh------c--------cCCCCh----HHH-HHHH-----------hhh
Confidence 444567778899999999988887755432110 0 001110 000 0100 022
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
-.+++.+.+++..|+|-++++..++.|.. ..++..++..+|..|...-++..|...+..+|++
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRH------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 34556666667777777777777666642 3344666666777777777777776666665554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=84.67 E-value=10 Score=37.97 Aligned_cols=77 Identities=18% Similarity=0.102 Sum_probs=56.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
...+..++.++++.++..+..+.+. ..+.....+.+++.+|++.+|+..++++.. +......+.-+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~--------~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------~~~~~p~~kAL 83 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPE--------FPELDLFDGWLHIVRGDWDDALRLLRELEE------RAPGFPYAKAL 83 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCC--------chHHHHHHHHHHHHhCCHHHHHHHHHHHhc------cCCCChHHHHH
Confidence 6788999999999999999887442 568888999999999999999999998643 22222333334
Q ss_pred HHHHHHhcCCh
Q 002424 753 LAEIHKKSGNA 763 (924)
Q Consensus 753 la~i~~~~G~~ 763 (924)
+|.++...|++
T Consensus 84 lA~CL~~~~D~ 94 (160)
T PF09613_consen 84 LALCLYALGDP 94 (160)
T ss_pred HHHHHHHcCCh
Confidence 44445555555
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.37 E-value=8 Score=42.36 Aligned_cols=91 Identities=20% Similarity=0.092 Sum_probs=72.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcccchhHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAAN---QFSEAAAVAHSLFCMCYKFNLQVENASV 749 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G---~~~eAl~~l~~aL~~~~~~gd~~~~a~a 749 (924)
..++..|++..|...|+++..+.. | ..+.+...++++.... .-.+|.+++++++. ....++++
T Consensus 164 ~~ym~~~~~~~A~~AY~~A~rL~g-----~---n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~------~D~~~ira 229 (287)
T COG4235 164 RAYMALGRASDALLAYRNALRLAG-----D---NPEILLGLAEALYYQAGQQMTAKARALLRQALA------LDPANIRA 229 (287)
T ss_pred HHHHHhcchhHHHHHHHHHHHhCC-----C---CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh------cCCccHHH
Confidence 788999999999999999998743 3 4566777777775554 45677888888876 35667899
Q ss_pred HHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 750 LLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 750 l~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+..+|..+...|+|..|......-++..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 9999999999999999988877666654
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=84.27 E-value=72 Score=37.21 Aligned_cols=181 Identities=14% Similarity=0.038 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcC-------CHHHHHHHHHHHhhhhhcc
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG-------HLKLAQKVCDELGVMASSV 698 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G-------~~~~A~~~l~~ll~l~~~~ 698 (924)
..+.+||......|+|+-|...++.++.-|..-..-.+..-+..+...-.+..| +.++....++.+...+...
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 345778888888999999999999988866422211111111111111222222 2236666677666554431
Q ss_pred C---CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcccchhHHHHHHHHHHHH--HhcCChhhhHHHHHH
Q 002424 699 T---GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY-KFNLQVENASVLLLLAEIH--KKSGNAVLGIPYALA 772 (924)
Q Consensus 699 ~---~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~-~~gd~~~~a~al~~la~i~--~~~G~~~~Al~~l~~ 772 (924)
. ...+.....+....++++..+|.|.+|...+-+....+- ..-...+.+-++=..|.++ .....+......+++
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~RK 368 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFRK 368 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhHH
Confidence 1 012335778889999999999999888877666655421 0011112444555566666 443333222222211
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 773 SLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 773 AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
+ .+ . ...=|.-|...|.. ..|++++..+++....
T Consensus 369 ~-------af-----~-~vLAg~~~~~~~~~--~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 369 Y-------AF-----H-MVLAGHRYSKAGQK--KHALRCYKQALQVYEG 402 (414)
T ss_pred H-------HH-----H-HHHHHHHHHHCCCH--HHHHHHHHHHHHHhCC
Confidence 1 11 1 22245677889998 9999999999988653
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.13 E-value=1.9 Score=33.02 Aligned_cols=29 Identities=24% Similarity=0.170 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
.++..++..+...|++++|.+.++++++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45778888889999999999999988874
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=83.37 E-value=8.6 Score=40.54 Aligned_cols=97 Identities=14% Similarity=0.068 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcc-cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH-------hCCcHHHHHHHHH
Q 002424 721 NQFSEAAAVAHSLFCMCYKFN-LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL-------LNLDLLKASATLT 792 (924)
Q Consensus 721 G~~~eAl~~l~~aL~~~~~~g-d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~-------~g~~~~~A~al~~ 792 (924)
..+++|++.+.-++-.+.-.+ +....+.+.+.+|.+|...|+.+.....+.+|+....+ -.....++.++..
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 355666666666655444333 44456888899999999999976666666666655432 1235566778888
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 793 LAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 793 La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
+|++...+|.. ++|.+.+.+++..-
T Consensus 171 igeL~rrlg~~--~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 171 IGELNRRLGNY--DEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhCCH--HHHHHHHHHHHcCC
Confidence 99999999998 99999888876543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.71 E-value=11 Score=44.13 Aligned_cols=131 Identities=15% Similarity=0.088 Sum_probs=81.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHH
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 707 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a 707 (924)
..+++..+-.+|-++.|+...+....+| +.++..|+++.|.++..++ . ..
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rF-----------------eLAl~lg~L~~A~~~a~~~-------~------~~ 347 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRF-----------------ELALQLGNLDIALEIAKEL-------D------DP 347 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHH-----------------HHHHHCT-HHHHHHHCCCC-------S------TH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHh-----------------HHHHhcCCHHHHHHHHHhc-------C------cH
Confidence 4667777788898999988877655554 6889999999998654433 1 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
..+.++|+..+..|+++-|.+++.++-.. -.+..+|..+|+. .-+.+-..+|...|+--.+-
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~--------------~~L~lLy~~~g~~----~~L~kl~~~a~~~~~~n~af 409 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAKDF--------------SGLLLLYSSTGDR----EKLSKLAKIAEERGDINIAF 409 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT-H--------------HHHHHHHHHCT-H----HHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcCc--------------cccHHHHHHhCCH----HHHHHHHHHHHHccCHHHHH
Confidence 57899999999999999999998876331 1233456677775 23334446666666543333
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 002424 788 SATLTLAELWLSFGPNHAKMASNLIQQA 815 (924)
Q Consensus 788 ~al~~La~l~~~lG~~~~~~Al~lLe~a 815 (924)
.+.+ -+|+. ++..++|.+.
T Consensus 410 ~~~~-------~lgd~--~~cv~lL~~~ 428 (443)
T PF04053_consen 410 QAAL-------LLGDV--EECVDLLIET 428 (443)
T ss_dssp HHHH-------HHT-H--HHHHHHHHHT
T ss_pred HHHH-------HcCCH--HHHHHHHHHc
Confidence 3333 24554 5555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=82.66 E-value=86 Score=34.93 Aligned_cols=138 Identities=22% Similarity=0.193 Sum_probs=93.6
Q ss_pred cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh-HHH
Q 002424 742 LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALP-LIL 820 (924)
Q Consensus 742 d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp-~vl 820 (924)
.....+..++..+.+-.+.|+++.|...+.++...-...+.. ...+.+.-+.++...|.. .+|+..+++.+. ...
T Consensus 141 ~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~--~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 141 LPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQ--EEAIQKLRELLKCRLS 216 (352)
T ss_pred chhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhh
Confidence 355667788999999999999999988887766543211111 234455567788889998 999999999888 222
Q ss_pred ---------------------------hhCCHHHHHHHHHHHHHhhhcC-CCCCCCCChHHHHHHHHHHHHHHHhhcCHH
Q 002424 821 ---------------------------GHGGLELRARAFIAEAKCLLSD-PSFSVSQNPEAVLDPLRQASEELQVLEDHE 872 (924)
Q Consensus 821 ---------------------------~~gd~~~~A~a~~~LAr~~la~-~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~ 872 (924)
........|+++..+|+-.... .. ...+....++..+++|..... .
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~-~~~~~~~~~~~~~~~a~~~~~-----~ 290 (352)
T PF02259_consen 217 KNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSK-LSSESSDEILKYYKEATKLDP-----S 290 (352)
T ss_pred hccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccc-cccccHHHHHHHHHHHHHhCh-----h
Confidence 2334678888898888655552 11 114778889999999876643 2
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 002424 873 LAAEAFYLIAIVFDKLGR 890 (924)
Q Consensus 873 ~~~~vl~~lA~l~~~lGd 890 (924)
..+ +++..|..+..+-+
T Consensus 291 ~~k-~~~~~a~~~~~~~~ 307 (352)
T PF02259_consen 291 WEK-AWHSWALFNDKLLE 307 (352)
T ss_pred HHH-HHHHHHHHHHHHHH
Confidence 222 66666666665543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=80.74 E-value=2.8 Score=32.00 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHhc
Q 002424 373 ALLCLGMMHFHFGHPKQALDVLTEAVCLSQQH 404 (924)
Q Consensus 373 all~la~~h~~fg~~~~A~~~l~Eai~~Aqe~ 404 (924)
+.+.+|..|...|++++|++.++++|+..=++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 56889999999999999999999999875433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.52 E-value=1e+02 Score=34.48 Aligned_cols=161 Identities=13% Similarity=-0.049 Sum_probs=115.9
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 753 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~l 753 (924)
..+.+|++.+|....++++.-++ .| ..+....-..+...|+...-...++..+..-. .|..--..+.-+.
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~P----tD----lla~kfsh~a~fy~G~~~~~k~ai~kIip~wn--~dlp~~sYv~Gmy 181 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYP----TD----LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN--ADLPCYSYVHGMY 181 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCc----hh----hhhhhhhhhHHHhccchhhhhhHHHHhccccC--CCCcHHHHHHHHH
Confidence 44689999999999999998433 23 34455556677889999999888888765211 2333346677888
Q ss_pred HHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHH
Q 002424 754 AEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI 833 (924)
Q Consensus 754 a~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~ 833 (924)
|-....+|-+..|...+.+|+++-+ ++-+..++ +|.|+..-|+. .++.+..+..-...+ . +-.+.+.-|.
T Consensus 182 aFgL~E~g~y~dAEk~A~ralqiN~---~D~Wa~Ha---~aHVlem~~r~--Keg~eFM~~ted~Wr-~-s~mlasHNyW 251 (491)
T KOG2610|consen 182 AFGLEECGIYDDAEKQADRALQINR---FDCWASHA---KAHVLEMNGRH--KEGKEFMYKTEDDWR-Q-SWMLASHNYW 251 (491)
T ss_pred HhhHHHhccchhHHHHHHhhccCCC---cchHHHHH---HHHHHHhcchh--hhHHHHHHhcccchh-h-hhHHHhhhhH
Confidence 8889999999999999999988753 44444444 56666667777 899998887766665 2 3345566677
Q ss_pred HHHHhhhcCCCCCCCCChHHHHHHHHH
Q 002424 834 AEAKCLLSDPSFSVSQNPEAVLDPLRQ 860 (924)
Q Consensus 834 ~LAr~~la~~~~~~~g~~~~Al~~L~~ 860 (924)
.-|-+|+. .+.++.|++.+++
T Consensus 252 H~Al~~iE------~aeye~aleIyD~ 272 (491)
T KOG2610|consen 252 HTALFHIE------GAEYEKALEIYDR 272 (491)
T ss_pred HHHHhhhc------ccchhHHHHHHHH
Confidence 77888887 5677777776663
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 5e-12
Identities = 81/461 (17%), Positives = 143/461 (31%), Gaps = 137/461 (29%)
Query: 84 WLTDQLISRLSSLSSPDDLFNLFSDLRAILGGTDLSAVD-DEQVVLDPNS---NLGMFVR 139
WL L + +SP+ + + L + S D + L +S L ++
Sbjct: 186 WLN------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 140 -----RCLL------------AFNLLCFEGVCHLLTSIGIYCKEALSSCSAYELPCLDDS 182
CLL AFNL C + LLT+ + LS+ + + LD
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSC--KI--LLTTRFKQVTDFLSAATTTHIS-LDH- 293
Query: 183 SNELEALSEYENMDLENIVFEK-VNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVSAV 241
L+ E L K ++ + EV P+ L + E I+
Sbjct: 294 --HSMTLTPDEVKSL----LLKYLDCRPQ---DLPREV--LTTNPRRLSIIAESIRDGLA 342
Query: 242 S----KSQGGDK---CREASPSAHAPNDAMREFDS---------ISGAFLRTNW-QMQGY 284
+ K DK E+S + P + + FD I L W +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 285 LMEQ-------ADAIEKHG--SSFSLNAFELILRQLQKLAPELHRVHFLRY--------- 326
+ +EK S+ S+ + L L+ + LHR Y
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 327 -LNSLYHDDYF--------AALENLHR-------YFDYSAGTEGFDFAQPSIGCNSFGRY 370
L Y D YF +E+ R + D F F + I R+
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-------FRFLEQKI------RH 509
Query: 371 EIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYT--LAAISNLLSEIGIST 428
+ L+ L + + + + D Y + AI + L +I
Sbjct: 510 DSTAWN---------ASGSILNTLQQ-LKFYKPYICDNDPKYERLVNAILDFLPKIE--- 556
Query: 429 TTGILGSSYSPITSIGTTLSVQQQLF----VLLKESFRRAE 465
++ S Y+ + ++ L + +E+ ++ +
Sbjct: 557 -ENLICSKYTDL--------LRIALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 5e-11
Identities = 86/572 (15%), Positives = 177/572 (30%), Gaps = 176/572 (30%)
Query: 179 LDDSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKV 238
+D + E + Y+ D+ ++ + + + V+D+
Sbjct: 7 MDFETGEHQ----YQYKDILSVFEDAFVDNFDCKD-------------------VQDMPK 43
Query: 239 SAVSKSQGGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKH-GS 297
S +SK + S A + +R F ++ L +Q + ++K
Sbjct: 44 SILSKEE----IDHIIMSKDAVSGTLRLFWTL--------------LSKQEEMVQKFVEE 85
Query: 298 SFSLNAFELILRQLQK--LAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGF 355
+N ++ ++ ++ P + ++ + LY+D+ A N+ R Y +
Sbjct: 86 VLRIN-YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 356 DFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLA 415
+P+ + + G+ G K + VC + + + +
Sbjct: 145 LELRPAKN--------VLID--GV----LGSGKT---WVALDVC--LSYKVQCKMDFKIF 185
Query: 416 AISNLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESF-----------RRA 464
++ L + SP T L + Q+L + ++ R
Sbjct: 186 WLN--------------LKNCNSP----ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 465 ESLK--LKRLVAANHLAMAKFDLTHVQRP--LLSFGPKTAMRLRTCPTNVCKEL---RLA 517
S++ L+RL+ + L +VQ +F CK L R
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS------------CKILLTTRFK 275
Query: 518 SHLISDFVSESSTMTTDGAFSTSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQ----- 572
++DF+S ++T ++ S+ LT + +
Sbjct: 276 Q--VTDFLSAATT------------THISLDHHSMTLTPDE-------VKSLLLKYLDCR 314
Query: 573 PSSIPGSVLQ-------LVGSS---YLLRATAWEAYGSAPLTR-----VNTL---IYATC 614
P +P VL ++ S L W+ LT +N L Y
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 615 FSDGSSLSDAALAHVKL-IQHLAVFKGYKEAFSALKIAEE--KFLSVSK----------S 661
F S + L++ + + + K+ V K S
Sbjct: 375 FDRLSVFPP----SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 662 RILLLKLQLLHERSLHR---GHLKLAQKVCDE 690
L LK++L +E +LHR H + + +
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 38/270 (14%), Positives = 80/270 (29%), Gaps = 18/270 (6%)
Query: 641 YKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700
+ + ++ E+ L L E +G L+ A + ++ + +
Sbjct: 69 LTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL 128
Query: 701 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS 760
+ + A+ L A + EA A A S + + + L +L +
Sbjct: 129 EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ-PQQQLQCLAMLIQCSLAR 187
Query: 761 GNAVLGIPYALASLSFCQLLNLDL-LKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 819
G+ + ++A W G A+N ++
Sbjct: 188 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG--DKAAAANWLRHTAKPE 245
Query: 820 LGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFY 879
+ IA A+ LL E L + +E + L
Sbjct: 246 FANNHFLQGQWRNIARAQILL--------GEFEPAEIVLEELNENARSLRLMSDLNRNLL 297
Query: 880 LIAIVFDKLGRLAEREEAAALFKEYVLALE 909
L+ ++ + GR + +A + + AL+
Sbjct: 298 LLNQLYWQAGR---KSDAQRVLLD---ALK 321
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 924 | |||
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.88 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.85 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.84 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.84 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.84 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.8 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.79 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.74 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.73 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.7 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.7 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.69 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.63 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.63 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.6 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.6 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.6 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.6 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.57 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.57 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.55 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.54 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.52 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.52 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.52 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.51 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.5 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.5 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.49 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.49 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.48 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.48 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.48 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.42 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.42 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.41 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.4 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.4 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.38 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.38 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.37 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.36 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.35 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.35 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.34 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.33 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.32 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.31 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.29 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.28 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.25 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.24 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.22 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.19 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.19 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.18 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.18 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.14 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.14 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.12 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.11 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.09 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.07 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.06 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.06 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.02 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.01 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.99 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.96 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 98.95 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.94 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.92 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.91 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.9 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.9 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.89 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.88 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.88 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.88 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.86 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.85 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.85 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.77 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.77 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.75 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.72 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 98.7 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.63 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.63 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.61 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.5 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.49 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.49 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.48 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.45 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.44 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.43 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.42 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.4 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.4 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.39 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.37 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.37 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.35 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.34 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.34 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.32 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.32 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.3 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.26 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.25 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.24 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.23 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.21 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.21 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.2 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.18 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.17 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.17 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.14 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.11 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.07 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.07 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.06 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.05 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.05 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.03 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.0 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.0 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.98 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.97 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.97 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.96 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.93 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.93 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.92 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.92 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.91 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.91 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.86 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.86 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.85 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.84 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.83 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.8 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.78 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.76 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.76 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.75 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.75 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.74 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.73 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.71 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.71 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.71 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.69 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.69 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.68 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.68 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.67 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.66 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.66 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.64 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.63 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.62 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.6 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.59 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.54 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.53 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.52 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.52 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.49 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.49 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.46 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.45 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.37 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 97.34 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.33 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.3 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.3 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.28 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.23 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.18 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.16 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.14 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.13 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.11 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.99 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 96.94 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.8 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 96.74 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.65 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 96.41 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.38 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.17 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.11 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 96.05 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 95.95 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 95.93 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.67 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.66 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.64 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 95.64 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.52 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 95.5 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.25 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 94.79 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.72 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 94.21 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 93.89 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 93.54 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.18 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 93.08 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.97 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 92.88 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 92.87 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.69 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.47 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 92.29 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 91.81 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 91.63 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 91.36 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 91.13 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 90.28 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.1 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 89.27 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 87.43 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 87.14 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.06 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 83.49 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 80.8 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 80.39 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 80.36 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 80.09 |
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-19 Score=200.17 Aligned_cols=278 Identities=14% Similarity=0.038 Sum_probs=238.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCC--------------------HH
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGH--------------------LK 682 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~--------------------~~ 682 (924)
..+.++.++|..+...|+|++|...++++.+.++..++.......+...+..+...|+ +.
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 3456678899999999999999999999999988877654322222222267888999 99
Q ss_pred HHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCC
Q 002424 683 LAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN 762 (924)
Q Consensus 683 ~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~ 762 (924)
+|...+.+++.++...+ |+.....+...+|.++...|++++|++.+++++..+...++....+.++..+|.++...|+
T Consensus 165 ~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999999887766 7677889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcC
Q 002424 763 AVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSD 842 (924)
Q Consensus 763 ~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~ 842 (924)
+++|+..+.+++.+....++....+.++..+|.++...|+. ++|+.++++++......++....+.++..+|.++..
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~- 319 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY--EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA- 319 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHhhhc
Q 002424 843 PSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAE-REEAAALFKEYVLALEN 910 (924)
Q Consensus 843 ~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~-r~~aa~~f~~l~~~~~~ 910 (924)
.|++.+|+.++++|++.+..+++......++..+|.++..+|+... .......+..+...+++
T Consensus 320 -----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 383 (406)
T 3sf4_A 320 -----LGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNG 383 (406)
T ss_dssp -----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-----------------
T ss_pred -----cCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999998733 34444444444444443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.2e-18 Score=182.79 Aligned_cols=307 Identities=12% Similarity=0.022 Sum_probs=266.3
Q ss_pred HHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHH
Q 002424 587 SYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL 666 (924)
Q Consensus 587 ~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l 666 (924)
.+.+.+..+-..|.-.-+.-...-.+.. +..+.+..+.++..+|..+...|+|++|...++++.+.....++......
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3556677777777766665544333332 23345566788999999999999999999999999998877766442221
Q ss_pred HHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCC--------------------HHHH
Q 002424 667 KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQ--------------------FSEA 726 (924)
Q Consensus 667 ~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~--------------------~~eA 726 (924)
.+......+...|++++|...+.+++.+.+..+ |+.....+...++.++...|+ +++|
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 212222678899999999999999999888766 777788899999999999999 9999
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHH
Q 002424 727 AAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAK 806 (924)
Q Consensus 727 l~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~ 806 (924)
++.+++++..+...++....+.++..+|.++...|+++.|+..+.+++.++...+++...+.++..+|.++...|+. +
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~ 240 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF--E 240 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH--H
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH--H
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 002424 807 MASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFD 886 (924)
Q Consensus 807 ~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~ 886 (924)
+|...+++++......++....+.++..+|.++.. .|++++|+.++++|++.+...+++.....++..+|.+|.
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 314 (338)
T 3ro2_A 241 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL------LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 314 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH------hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHH
Q 002424 887 KLGRLAEREEAAALFKEYV 905 (924)
Q Consensus 887 ~lGd~~~r~~aa~~f~~l~ 905 (924)
..|+.+++.++.....++.
T Consensus 315 ~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 315 ALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHTCHHHHHHHHHHHHHC-
T ss_pred HcCChHHHHHHHHHHHHHH
Confidence 9999999887666655543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-18 Score=190.51 Aligned_cols=307 Identities=12% Similarity=0.014 Sum_probs=265.5
Q ss_pred hHHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH
Q 002424 586 SSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL 665 (924)
Q Consensus 586 ~~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~ 665 (924)
..+...+..+-..|.-.-+.-.....+.. +..+.+..+.++.++|..+...|+|++|...++++.+.+...++.....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 34455666777777766555544333333 2334556678999999999999999999999999999887776644222
Q ss_pred HHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCC-----------------HHHHHH
Q 002424 666 LKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQ-----------------FSEAAA 728 (924)
Q Consensus 666 l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~-----------------~~eAl~ 728 (924)
..+...+..+...|++++|..++.+++.++...+ |......++..+|.++...|+ +++|++
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 2222222788899999999999999999887766 666788999999999999999 999999
Q ss_pred HHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHH
Q 002424 729 VAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMA 808 (924)
Q Consensus 729 ~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~A 808 (924)
.+++++..+...++....+.++..+|.++...|+++.|+.++.+++.+....++....+.++..+|.++..+|+. ++|
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A 282 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQF--EDA 282 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCH--HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCH--HHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 002424 809 SNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKL 888 (924)
Q Consensus 809 l~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~l 888 (924)
+.++++++......++....+.++..+|.++.. .|++++|+.++++|++.+...+++.....++..+|.+|...
T Consensus 283 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 356 (411)
T 4a1s_A 283 AEHYKRTLALAVELGEREVEAQSCYSLGNTYTL------LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI 356 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 002424 889 GRLAEREEAAALFKEY 904 (924)
Q Consensus 889 Gd~~~r~~aa~~f~~l 904 (924)
|+.+++.++.....++
T Consensus 357 g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 357 GGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9999987754444443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-17 Score=186.64 Aligned_cols=306 Identities=12% Similarity=0.021 Sum_probs=266.1
Q ss_pred HHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHH
Q 002424 587 SYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL 666 (924)
Q Consensus 587 ~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l 666 (924)
.+...+..+-..|...-+.-.....+.. ...+.+..+.++..+|..+...|+|++|...++++....+..++......
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3556777777778776665544333333 23345556789999999999999999999999999998887766442222
Q ss_pred HHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCC--------------------HHHH
Q 002424 667 KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQ--------------------FSEA 726 (924)
Q Consensus 667 ~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~--------------------~~eA 726 (924)
.+...+..+...|++++|...+.+++.+.+..+ |+...+.+...+|.++...|+ +++|
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 222222678899999999999999999988766 777788999999999999999 9999
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHH
Q 002424 727 AAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAK 806 (924)
Q Consensus 727 l~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~ 806 (924)
++.+++++..+...++....+.++..+|.++...|+++.|+..+.+++.++...++....+.+...+|.++..+|+. +
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~ 244 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF--E 244 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--H
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh--H
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 002424 807 MASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFD 886 (924)
Q Consensus 807 ~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~ 886 (924)
+|+.++++++......++....+.++..+|.++.. .|++++|+.++++|++.+...+++.....++..+|.+|.
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 318 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL------LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH------hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHH
Q 002424 887 KLGRLAEREEAAALFKEY 904 (924)
Q Consensus 887 ~lGd~~~r~~aa~~f~~l 904 (924)
..|+.+++.++.....++
T Consensus 319 ~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 319 ALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999877754444333
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.1e-18 Score=189.53 Aligned_cols=247 Identities=14% Similarity=0.017 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCC-----------------HHHHH
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGH-----------------LKLAQ 685 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~-----------------~~~A~ 685 (924)
..+.++.++|..+...|+|++|...++++.+.++..++.......+......+...|+ +++|.
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 4456778889999999999999999999999988776644222222222267788999 99999
Q ss_pred HHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhh
Q 002424 686 KVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVL 765 (924)
Q Consensus 686 ~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~ 765 (924)
.++.+++.+....+ ++.....++..+|.++...|++++|++.+++++..+...++....+.++..+|.++...|++++
T Consensus 204 ~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 204 EFYQENLKLMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 99999999877665 6667888999999999999999999999999999999989989999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCC
Q 002424 766 GIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSF 845 (924)
Q Consensus 766 Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~ 845 (924)
|+..+.+++.+....++....+.++..+|.++..+|+. ++|+.++++++......++....+.++..+|.++..
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~---- 355 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF--NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA---- 355 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH----
Confidence 99999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 002424 846 SVSQNPEAVLDPLRQASEELQVLEDHELAAEAFY 879 (924)
Q Consensus 846 ~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~ 879 (924)
.|++++|+.++++|++++++++++..++.+..
T Consensus 356 --~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 387 (411)
T 4a1s_A 356 --IGGHERALKYAEQHLQLAXXXXXXXXXXXXXX 387 (411)
T ss_dssp --TTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred --hccHHHHHHHHHHHHHHHhhcccchhhhhhhh
Confidence 89999999999999999999999998887643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.2e-17 Score=173.92 Aligned_cols=269 Identities=15% Similarity=0.070 Sum_probs=240.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+..+...|..+...|+|++|...++++.+..+. +.......+......+...|++++|...+++++.++...+ |+
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~ 79 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE--DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--DQ 79 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--cc
Confidence 3566778899999999999999999999987543 2211111111122678899999999999999999877766 77
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCC--------------------h
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN--------------------A 763 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~--------------------~ 763 (924)
...+.+...++.++...|++++|++.+++++..+...++....+.++..+|.++...|+ +
T Consensus 80 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (338)
T 3ro2_A 80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNAL 159 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999 9
Q ss_pred hhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCC
Q 002424 764 VLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDP 843 (924)
Q Consensus 764 ~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~ 843 (924)
.+|+..+.+++.++...++....+.+...+|.++...|+. ++|+.++++++......++....+.++..+|.++..
T Consensus 160 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-- 235 (338)
T 3ro2_A 160 QAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF--RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF-- 235 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 844 SFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 844 ~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
.|++++|+.++++|+..+...+++.....++..+|.++...|+.+++.++.....++
T Consensus 236 ----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 236 ----LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp ----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999987755554444
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-16 Score=177.58 Aligned_cols=269 Identities=10% Similarity=-0.005 Sum_probs=238.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC-cch
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD-MDL 705 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D-~~~ 705 (924)
.+..+|..+...|+|++|...+++|.+.+...++...........+..+...|++.+|...+.+++.+++..+ + ...
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~ 182 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE--AYNIR 182 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS--TTHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc--cchHH
Confidence 4556888999999999999999999998887776542222222222788899999999999999999988765 4 566
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.+.+...+|.++...|++++|++.+++++..++..++....+.++..+|.++...|++++|+.++.+|+.++...++...
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998566
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
.+.++..||.++..+|+. ++|...+++++......++....+. +..+|.++.. .|+. ..+++|+..+
T Consensus 263 ~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~------~~~~----~~~~~al~~~ 329 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKI--DKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLS------GPDE----EAIQGFFDFL 329 (383)
T ss_dssp HHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTS------SCCH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhC------CCcH----HHHHHHHHHH
Confidence 699999999999999998 9999999999999999999988887 6779999998 6776 6889999999
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhc
Q 002424 866 QVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALEN 910 (924)
Q Consensus 866 ~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~~~~~ 910 (924)
++.+......+++..+|.+|...|+.+++.++.....++...+.+
T Consensus 330 ~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 330 ESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred HHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998888877777666555
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.3e-15 Score=165.26 Aligned_cols=309 Identities=13% Similarity=0.013 Sum_probs=239.1
Q ss_pred hhhHHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHH
Q 002424 584 VGSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI 663 (924)
Q Consensus 584 ~g~~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~ 663 (924)
.+......+.+.-..|...-+.-.....+... ...+....+.++.++|..+...|+|++|...++++.+..+..++...
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 91 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence 44555666666666676655554443334433 22233456778999999999999999999999999999988776543
Q ss_pred HHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 002424 664 LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ 743 (924)
Q Consensus 664 ~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~ 743 (924)
....+......++..|++++|..++++++.+.+..+..+......+...++.++...|++++|.+.+++++..+...++.
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 22222222267889999999999999999988776633224567788899999999999999999999999998877766
Q ss_pred hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh
Q 002424 744 VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD-LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH 822 (924)
Q Consensus 744 ~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~-~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~ 822 (924)
. .+.++..+|.++...|++++|+..+.+++.+....+.+ ...+.+...++.++...|+. ++|..++++++....
T Consensus 172 ~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~A~~~~~~a~~~~~-- 246 (373)
T 1hz4_A 172 Q-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK--AAAANWLRHTAKPEF-- 246 (373)
T ss_dssp G-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHSCCCCC--
T ss_pred H-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH--HHHHHHHHhCCCCCC--
Confidence 5 56789999999999999999999999999998776664 33333334566778889998 999999999886432
Q ss_pred CCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002424 823 GGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFK 902 (924)
Q Consensus 823 gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~ 902 (924)
++......++..+|++++. .|++++|+.+++++++.....+.+....+++..+|.++...|+.+++.++.....
T Consensus 247 ~~~~~~~~~~~~la~~~~~------~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQIL------LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2212223356788999999 8999999999999999999999998889999999999999999998776544443
Q ss_pred HH
Q 002424 903 EY 904 (924)
Q Consensus 903 ~l 904 (924)
.+
T Consensus 321 ~~ 322 (373)
T 1hz4_A 321 KL 322 (373)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-15 Score=168.62 Aligned_cols=268 Identities=12% Similarity=-0.015 Sum_probs=232.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC-cch
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD-MDL 705 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D-~~~ 705 (924)
.+..+|..+...|+|++|...+++|...+...++...........+..+...|++..|...+.+++.+++..+ + ...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~ 180 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP--LYSIR 180 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST--TCHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC--Cchhh
Confidence 4667888999999999999999999998887776442222222222788899999999999999999988655 3 345
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.+.+..++|.++...|++++|++.+++++..++..++....+.++..+|.++...|++++|+.++.+|+.+++..+++..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
+.++..||.++..+|+. ++|+..+++++......++....+. +..++.++.. .++. ..+.+|+..+
T Consensus 261 -~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~ly~~------~~~~----~~~~~al~~~ 326 (378)
T 3q15_A 261 -PKVLFGLSWTLCKAGQT--QKAFQFIEEGLDHITARSHKFYKEL-FLFLQAVYKE------TVDE----RKIHDLLSYF 326 (378)
T ss_dssp -HHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCCTTCCSCHHHH-HHHHHHHHSS------SCCH----HHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhC------CCcH----HHHHHHHHHH
Confidence 99999999999999998 9999999999999998888777664 5778888877 5554 6788888889
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhc
Q 002424 866 QVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALEN 910 (924)
Q Consensus 866 ~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~~~~~ 910 (924)
++.+......+++..+|.+|...|+.+.+.++.....++...+.+
T Consensus 327 ~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 327 EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999988877776666655544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-15 Score=153.12 Aligned_cols=199 Identities=16% Similarity=0.069 Sum_probs=178.4
Q ss_pred HHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Q 002424 675 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLA 754 (924)
Q Consensus 675 al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la 754 (924)
++..|++.+|...++.+.. |+...+.+...+|.++...|++++|++.+++++..++..++....+.++..+|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 73 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVG 73 (203)
T ss_dssp -----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3578999999986554432 55568899999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhhhHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHH
Q 002424 755 EIHKKSGNAVLGIPYALASLSFCQLLN-LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI 833 (924)
Q Consensus 755 ~i~~~~G~~~~Al~~l~~AL~la~~~g-~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~ 833 (924)
.++...|++++|+..+.+++.+++..+ .+...+.++..+|.++..+|+. ++|+..+++++......++....+.++.
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~ 151 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL--AGARQEYEKSLVYAQQADDQVAIACAFR 151 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999999999999999999999999 4558999999999999999998 9999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcC
Q 002424 834 AEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLG 889 (924)
Q Consensus 834 ~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lG 889 (924)
.+|.++.. .|++++|+.++++|++.++..+++..+++++..++.+....|
T Consensus 152 ~la~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (203)
T 3gw4_A 152 GLGDLAQQ------EKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHH 201 (203)
T ss_dssp HHHHHHHH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHH------CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcccchhhccc
Confidence 99999999 899999999999999999999999999999999987654433
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-14 Score=160.58 Aligned_cols=265 Identities=13% Similarity=-0.009 Sum_probs=222.8
Q ss_pred HHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc-hHHHHHHHh
Q 002424 591 RATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK-SRILLLKLQ 669 (924)
Q Consensus 591 ~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~-~~~~~l~l~ 669 (924)
.+......|.-.-+.-+....+.......+....+.++.++|..+...|+|++|...+++|.+.++..++ .......+.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 5555566666665555444334433334455568899999999999999999999999999999998876 322222233
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHH
Q 002424 670 LLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASV 749 (924)
Q Consensus 670 l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~a 749 (924)
..+..+...|++++|...+.+++.+++..+ |+...+.+..++|.++...|++++|++.+++++.+++..++....+.+
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 333788899999999999999999988776 778888999999999999999999999999999999998886777999
Q ss_pred HHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHH
Q 002424 750 LLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRA 829 (924)
Q Consensus 750 l~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A 829 (924)
+..+|.++...|+++.|+.++.+|+.++...+++...+. ...|+.++...|.. ..+++++......+.....+
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~~~~~------~~~~~al~~~~~~~~~~~~~ 339 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSGPDE------EAIQGFFDFLESKMLYADLE 339 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTSSCCH------HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhCCCcH------HHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999999999999999999999988888 56699999888872 45666777777778999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcC
Q 002424 830 RAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLED 870 (924)
Q Consensus 830 ~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~ 870 (924)
.++..||.++.. .|++++|+.++++|++..+++..
T Consensus 340 ~~~~~la~~y~~------~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 340 DFAIDVAKYYHE------RKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp HHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999 99999999999999999887765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.8e-15 Score=161.76 Aligned_cols=252 Identities=9% Similarity=-0.061 Sum_probs=212.0
Q ss_pred ccCHHHHHHHHHHHHHHhhc-----cCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHH
Q 002424 638 FKGYKEAFSALKIAEEKFLS-----VSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLR 712 (924)
Q Consensus 638 ~G~y~eA~~~L~~a~~~f~~-----~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~ 712 (924)
.|+|++|..+++++....+. .++.....-.+......+...|+|++|...+.+++.+....+ |+...+.++.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~ 81 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFEQ 81 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHH
Confidence 58899999999998886542 122121111122222567789999999999999999988777 77788999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHH
Q 002424 713 HARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLT 792 (924)
Q Consensus 713 ~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~ 792 (924)
++.++...|++++|++.+++++.+....|+....+.++..+|.+|.. |++++|+.++.+|+.+....+.....+.++..
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 160 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK 160 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHH
Q 002424 793 LAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHE 872 (924)
Q Consensus 793 La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~ 872 (924)
+|.++..+|+. ++|+.++++++......+.....+.++..+|.+++. .|++.+|+.++++|+ ....... .
T Consensus 161 lg~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~------~g~~~~A~~~~~~al-~~p~~~~-~ 230 (307)
T 2ifu_A 161 ASRLLVRQQKF--DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH------RADYVAAQKCVRESY-SIPGFSG-S 230 (307)
T ss_dssp HHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHT-TSTTSTT-S
T ss_pred HHHHHHHcCCH--HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHh-CCCCCCC-C
Confidence 99999999998 999999999999999999988899999999999999 899999999999999 5544332 3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 873 LAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 873 ~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
.++..+..++..+ ..|+.+...+ +..|..+
T Consensus 231 ~e~~~l~~l~~~~-~~~d~~~~~~-~~~~~~~ 260 (307)
T 2ifu_A 231 EDCAALEDLLQAY-DEQDEEQLLR-VCRSPLV 260 (307)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHH-HTTSHHH
T ss_pred HHHHHHHHHHHHH-HhcCHHHHHH-HHhCchh
Confidence 4566777777777 4688777665 3334443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.9e-14 Score=157.28 Aligned_cols=269 Identities=12% Similarity=0.043 Sum_probs=219.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhh-HHHHHHHcCCHHHHH---------HHHHHHhhh
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQL-LHERSLHRGHLKLAQ---------KVCDELGVM 694 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l-~~~~al~~G~~~~A~---------~~l~~ll~l 694 (924)
.....+=-+....++++++|..+++++...+.......-..+-.++ .+...+..+.+..+. ..+..+...
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 3334444455578999999999999999888776443322222221 112233334444444 556655442
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHH
Q 002424 695 ASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 695 ~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL 774 (924)
... .|........+..|.++...|++++|++.+++++..+...++....+.++..+|.++...|++..|+.++.+|+
T Consensus 92 ~~~---~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 92 QKK---LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp GHH---HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCC---CccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 111 13444566788899999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHHhCC-cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHH
Q 002424 775 SFCQLLNL-DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEA 853 (924)
Q Consensus 775 ~la~~~g~-~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~ 853 (924)
.+....+. ....+.+...||.++..+|+. ++|+..+++++......++....+.++..+|.++.. .|++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~------~~~~~~ 240 (378)
T 3q15_A 169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKHY--DKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR------SGDDQM 240 (378)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------HTCHHH
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------CCCHHH
Confidence 99998876 678899999999999999998 999999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 002424 854 VLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYV 905 (924)
Q Consensus 854 Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~ 905 (924)
|+.++++|++.++..+++.. ..++..+|.+|...|+.+++.++......+.
T Consensus 241 A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 241 AVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988 9999999999999999999887666555543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.6e-14 Score=150.96 Aligned_cols=236 Identities=16% Similarity=0.029 Sum_probs=198.0
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccC--chH-HHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhc
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS--KSR-ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASS 697 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~--~~~-~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~ 697 (924)
....+.++..+|..+...|+|++|...++++.+.+.... +.. .......+ +..+...|++++|...+++++.++..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNIL-ALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 346678899999999999999999999999999876543 221 11111122 26788999999999999999998765
Q ss_pred cCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--ccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHH
Q 002424 698 VTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF--NLQVENASVLLLLAEIHKKSGNAVLGIPYALASLS 775 (924)
Q Consensus 698 ~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~--gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~ 775 (924)
....|......+...++.++...|++++|++.+++++..++.. ++......++..+|.++...|++++|+..+.+++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5223555678899999999999999999999999999988776 66677889999999999999999999999999999
Q ss_pred HHHHh--CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhC------------------------------
Q 002424 776 FCQLL--NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG------------------------------ 823 (924)
Q Consensus 776 la~~~--g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~g------------------------------ 823 (924)
++... ++....+.+...+|.++..+|+. ++|..++++++......+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKF--KQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 99877 56778889999999999999998 999999999998765431
Q ss_pred -------------CHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 824 -------------GLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 824 -------------d~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
.....+.++..+|.++.. .|++++|+.++++|+++.
T Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRR------QGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp SCCCC---------CHHHHHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHh
Confidence 335677889999999999 899999999999998875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-13 Score=152.93 Aligned_cols=265 Identities=13% Similarity=-0.000 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
-.+.+...+|..+...|++++|...++++....+. .+...+...+......+...|++++|...+++++.+++..+ +
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~ 88 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD--V 88 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC--c
Confidence 34566778888899999999999999999987753 22222222222222677889999999999999999988766 7
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc--hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ--VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~--~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
+.....+...++.++...|++++|.+.+++++..+++.++. .....++..+|.++...|++++|..++.+++.++...
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 77788889999999999999999999999999999887776 5678889999999999999999999999999999887
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH-HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 002424 781 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL-ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR 859 (924)
Q Consensus 781 g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~-~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~ 859 (924)
+.+. .+.+...+|.++...|+. ++|+.++++++......+.. ...+.....++.++.. .|++++|..+++
T Consensus 169 ~~~~-~~~~~~~la~~~~~~g~~--~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~A~~~~~ 239 (373)
T 1hz4_A 169 QPQQ-QLQCLAMLIQCSLARGDL--DNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM------TGDKAAAANWLR 239 (373)
T ss_dssp CGGG-GHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHH
T ss_pred CcHH-HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH------CCCHHHHHHHHH
Confidence 7765 567888899999999998 99999999999887666552 3333333455566777 899999999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002424 860 QASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 901 (924)
Q Consensus 860 ~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f 901 (924)
++...... .......++..+|.++...|+.+++.+.....
T Consensus 240 ~a~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 240 HTAKPEFA--NNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HSCCCCCT--TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCCCCCC--cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 98764321 11111235678899999999998876644433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-14 Score=155.12 Aligned_cols=218 Identities=13% Similarity=0.047 Sum_probs=181.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..+...|+|++|...+.+++.+.+..+ |+...+.++.++|.++...|++++|+..+++++.+....|+....+.++..
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 355678999999999999999988776 777788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-CChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH-HHHHH
Q 002424 753 LAEIHKKS-GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL-ELRAR 830 (924)
Q Consensus 753 la~i~~~~-G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~-~~~A~ 830 (924)
+|.+|... |++++|+.++.+|+.+....+.....+.++..+|.++..+|+. ++|+.++++++......+.. +..+.
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~ 200 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY--IEASDIYSKLIKSSMGNRLSQWSLKD 200 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 99999996 9999999999999999999988888899999999999999998 99999999999877666553 45667
Q ss_pred HHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002424 831 AFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFK 902 (924)
Q Consensus 831 a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~ 902 (924)
++..+|.|+.. .|++.+|+.++++|+++....... .+...+..++..+. .|+...-.++...|+
T Consensus 201 ~~~~lg~~~~~------~g~~~~A~~~~~~al~l~p~~~~~-~~~~~l~~l~~~~~-~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 201 YFLKKGLCQLA------ATDAVAAARTLQEGQSEDPNFADS-RESNFLKSLIDAVN-EGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHHHHHHHHHH------TTCHHHHHHHHHGGGCC----------HHHHHHHHHHHH-TTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHHH------cCCHHHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHHH-cCCHHHHHHHHHHhc
Confidence 88999999999 899999999999998866655433 33456666676664 345444444555553
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-13 Score=150.85 Aligned_cols=217 Identities=12% Similarity=-0.011 Sum_probs=193.7
Q ss_pred HHcCCHHHHHHHHHHHhhhhhc--cC-CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 676 LHRGHLKLAQKVCDELGVMASS--VT-GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 676 l~~G~~~~A~~~l~~ll~l~~~--~~-~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
+..|++.+|.++++++...... .. ..|...........+.++...|++++|++.+.+++.+....++....+.++..
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~ 81 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQ 81 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3467888888888887764331 01 23656566677777888999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|.++...|+++.|+.++.+|+.+..+.|+....+.++..+|.++.. |++ ++|+.++++++.+....|+....+.++
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~--~~A~~~~~~Al~~~~~~~~~~~~~~~~ 158 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDL--SKAVHLYQQAAAVFENEERLRQAAELI 158 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCH--HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCH--HHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999988 887 999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 901 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f 901 (924)
..+|.++.. .|++++|+.++++|+..+...+.....+.++..++.++...|+.+++..+...+
T Consensus 159 ~~lg~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 159 GKASRLLVR------QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH------cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999 999999999999999999999998888999999999999999999877765544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-12 Score=147.03 Aligned_cols=220 Identities=14% Similarity=0.014 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++.++|..+...|++++|...++++.+..|.... .+ . .+ +..+...|++++|...+.+++.+.+ +
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~-~--~l-g~~~~~~~~~~~A~~~~~~al~~~p-----~-- 235 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD--AY-I--NL-GNVLKEARIFDRAVAAYLRALSLSP-----N-- 235 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH--HH-H--HH-HHHHHTTTCTTHHHHHHHHHHHHCT-----T--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH--HH-H--HH-HHHHHHcCCHHHHHHHHHHHHhhCc-----C--
Confidence 467889999999999999999999999987653221 11 1 11 1577889999999999999988632 1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
...+...++.++...|++++|++.+++++... .....++..+|.++...|++++|+..+.+++.+.-.
T Consensus 236 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----- 303 (388)
T 1w3b_A 236 -HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT----- 303 (388)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-----
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-----
Confidence 35778899999999999999999999998731 122457889999999999999999999999987421
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
...++..+|.++...|+. ++|+.++++++...- ..+.++..+|.++.. .|++++|+.++++|++.
T Consensus 304 -~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~------~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 304 -HADSLNNLANIKREQGNI--EEAVRLYRKALEVFP------EFAAAHSNLASVLQQ------QGKLQEALMHYKEAIRI 368 (388)
T ss_dssp -CHHHHHHHHHHHHTTTCH--HHHHHHHHHHTTSCT------TCHHHHHHHHHHHHT------TTCCHHHHHHHHHHHTT
T ss_pred -cHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCC------CcHHHHHHHHHHHHH------cCCHHHHHHHHHHHHhh
Confidence 245677899999999998 999999999986421 235688899999999 89999999999999864
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhcCC
Q 002424 865 LQVLEDHELAAEAFYLIAIVFDKLGR 890 (924)
Q Consensus 865 f~~l~~~~~~~~vl~~lA~l~~~lGd 890 (924)
. .....+++.+|.++..+|+
T Consensus 369 ~------p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 369 S------PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp C------TTCHHHHHHHHHHHHHTCC
T ss_pred C------CCCHHHHHhHHHHHHHccC
Confidence 2 2346788889998888774
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.7e-13 Score=134.99 Aligned_cols=196 Identities=11% Similarity=-0.098 Sum_probs=165.7
Q ss_pred HHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHH
Q 002424 636 AVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHAR 715 (924)
Q Consensus 636 a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ 715 (924)
...|+|++|.+.++.... .......... .+ ...+...|++++|..++++++.++...+ ++...+.+...+|.
T Consensus 3 ~~~g~~~~A~~~~~~~~~----~~~~~~~~~~-~l-~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~ 74 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA----HPATASGARF-ML-GYVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQVGM 74 (203)
T ss_dssp ----CHHHHHHHHHHHHT----STTTHHHHHH-HH-HHHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC----ChHHHHHHHH-HH-HHHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHH
Confidence 467999999995443321 1111111111 12 2678899999999999999999988776 77778999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHccc-chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 002424 716 TLLAANQFSEAAAVAHSLFCMCYKFNL-QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLA 794 (924)
Q Consensus 716 ll~~~G~~~eAl~~l~~aL~~~~~~gd-~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La 794 (924)
++...|++++|++.+++++..++..++ +...+.++..+|.++...|++++|+..+.+++.++...+++...+.++..+|
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 154 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLG 154 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 999999999999999999999999884 5588999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhc
Q 002424 795 ELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 841 (924)
Q Consensus 795 ~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la 841 (924)
.++...|+. ++|+..+++++....+.|+....+.++..++++...
T Consensus 155 ~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
T 3gw4_A 155 DLAQQEKNL--LEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHH 199 (203)
T ss_dssp HHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-
T ss_pred HHHHHCcCH--HHHHHHHHHHHHHHHHcCCHHHHHHHHhcccchhhc
Confidence 999999998 999999999999999999999999999999866443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-12 Score=141.01 Aligned_cols=224 Identities=15% Similarity=0.080 Sum_probs=196.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--ccchhHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF--NLQVENASVL 750 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~--gd~~~~a~al 750 (924)
..++..|++++|..++++++.++......+......+...+|.++...|++++|++.+++++..++.. ++......++
T Consensus 35 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (311)
T 3nf1_A 35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATL 114 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 67889999999999999999987655433445578899999999999999999999999999988876 6677889999
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh--CCHH
Q 002424 751 LLLAEIHKKSGNAVLGIPYALASLSFCQLL--NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH--GGLE 826 (924)
Q Consensus 751 ~~la~i~~~~G~~~~Al~~l~~AL~la~~~--g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~--gd~~ 826 (924)
..+|.++...|++++|+..+.+++.+..+. +.....+.++..+|.++...|+. ++|+.++++++...... ++..
T Consensus 115 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 115 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY--EEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999887 77888899999999999999998 99999999999998776 5566
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhc-------------------------------------
Q 002424 827 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLE------------------------------------- 869 (924)
Q Consensus 827 ~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~------------------------------------- 869 (924)
..+.++..+|.++.. .|++++|+.++++|++.+...+
T Consensus 193 ~~~~~~~~la~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 193 NVAKTKNNLASCYLK------QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp HHHHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred HHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 788999999999999 8999999999999998765532
Q ss_pred ------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 870 ------DHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 870 ------~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
.......++..+|.+|...|+.+++.++.....++
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44677889999999999999999987766555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-11 Score=141.74 Aligned_cols=245 Identities=12% Similarity=0.002 Sum_probs=184.2
Q ss_pred hhHHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHH
Q 002424 585 GSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRIL 664 (924)
Q Consensus 585 g~~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~ 664 (924)
+..+...+..+...|...-+.-.....+... +. ..++..+|..+...|+|++|...++.+.+..+.... .+
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~----~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~ 313 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLH----PT---PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP--TY 313 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CC---HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH--HH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC----CC---chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH--HH
Confidence 3344444555555555444433332222211 11 467889999999999999999999999988764221 11
Q ss_pred HHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccch
Q 002424 665 LLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV 744 (924)
Q Consensus 665 ~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~ 744 (924)
. .+ +..+...|++++|...+++++.+.+. + ..+...++.++...|++++|++.+++++....
T Consensus 314 ~---~l-~~~~~~~~~~~~A~~~~~~a~~~~~~----~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~------ 375 (537)
T 3fp2_A 314 Y---HR-GQMYFILQDYKNAKEDFQKAQSLNPE----N----VYPYIQLACLLYKQGKFTESEAFFNETKLKFP------ 375 (537)
T ss_dssp H---HH-HHHHHHTTCHHHHHHHHHHHHHHCTT----C----SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred H---HH-HHHHHhcCCHHHHHHHHHHHHHhCCC----C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------
Confidence 1 11 16778999999999999999986331 2 36788999999999999999999999987532
Q ss_pred hHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHc----------CCChHHHHHHHHHH
Q 002424 745 ENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSF----------GPNHAKMASNLIQQ 814 (924)
Q Consensus 745 ~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~l----------G~~~~~~Al~lLe~ 814 (924)
....++..+|.++...|+++.|+..+.+++.+................+|.++... |+. ++|+..+++
T Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~A~~~~~~ 453 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF--NAAIKLLTK 453 (537)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHH--HHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHH--HHHHHHHHH
Confidence 22457788999999999999999999999999977776666666667788888888 887 999999999
Q ss_pred HHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcC
Q 002424 815 ALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLED 870 (924)
Q Consensus 815 aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~ 870 (924)
++..-- . ...++..+|.++.. .|++.+|+.++++|++.......
T Consensus 454 a~~~~p--~----~~~~~~~l~~~~~~------~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 454 ACELDP--R----SEQAKIGLAQLKLQ------MEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp HHHHCT--T----CHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHC--CHH
T ss_pred HHHhCC--C----CHHHHHHHHHHHHH------hccHHHHHHHHHHHHHhCCCcHH
Confidence 987632 1 23678999999999 89999999999999998755443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.54 E-value=8.4e-13 Score=139.15 Aligned_cols=219 Identities=16% Similarity=0.054 Sum_probs=189.0
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--ccchhHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF--NLQVENASVLL 751 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~--gd~~~~a~al~ 751 (924)
-....|++++|..++++++.++......|....+.++..+|.++...|++++|++.+++++..++.. ++....+.++.
T Consensus 10 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 10 HSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp ---CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 3356899999999999999987766544545678999999999999999999999999999998877 67778899999
Q ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh--CCHHH
Q 002424 752 LLAEIHKKSGNAVLGIPYALASLSFCQLLNL--DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH--GGLEL 827 (924)
Q Consensus 752 ~la~i~~~~G~~~~Al~~l~~AL~la~~~g~--~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~--gd~~~ 827 (924)
.+|.++...|++++|+..+.+++.++.+.+. ....+.++..+|.++..+|+. ++|+.++++++...... ++...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA--EEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCCHH
Confidence 9999999999999999999999999977744 478889999999999999998 99999999999997665 44567
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhc--------------------------------------
Q 002424 828 RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLE-------------------------------------- 869 (924)
Q Consensus 828 ~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~-------------------------------------- 869 (924)
.+.++..+|.++.. .|++++|+.+++++++.+....
T Consensus 168 ~~~~~~~la~~~~~------~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (283)
T 3edt_B 168 VAKTKNNLASCYLK------QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWY 241 (283)
T ss_dssp HHHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-----------
T ss_pred HHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 88999999999999 8999999999999999865532
Q ss_pred -----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002424 870 -----DHELAAEAFYLIAIVFDKLGRLAEREEAAAL 900 (924)
Q Consensus 870 -----~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~ 900 (924)
.......++..+|.+|...|+.+++.++...
T Consensus 242 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 242 KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4467788999999999999999987765443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-11 Score=138.57 Aligned_cols=230 Identities=20% Similarity=0.070 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.+..++|..+...|++++|...++++.+..|.... .+. .+ +..+...|++++|...+++++.+.+ .
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~---~l-~~~~~~~g~~~~A~~~~~~al~~~p-------~- 201 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV--AWS---NL-GCVFNAQGEIWLAIHHFEKAVTLDP-------N- 201 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH--HHH---HH-HHHHHTTTCHHHHHHHHHHHHHHCT-------T-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--HHH---HH-HHHHHHcCCHHHHHHHHHHHHhcCC-------C-
Confidence 66788999999999999999999999987553211 111 11 1577899999999999999998622 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
...+...++.++...|++++|+..+++++... .....++..+|.++...|+++.|+..+.+++.+.-.
T Consensus 202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------ 269 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLS------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH------ 269 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------
Confidence 35788999999999999999999999998742 223667889999999999999999999999875311
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
...+...+|.++...|+. ++|+.++++++...- ..+.++..+|.++.. .|++++|+.++++|++..
T Consensus 270 ~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~------~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 270 FPDAYCNLANALKEKGSV--AEAEDCYNTALRLCP------THADSLNNLANIKRE------QGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp CHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHCT------TCHHHHHHHHHHHHT------TTCHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCc------ccHHHHHHHHHHHHH------cCCHHHHHHHHHHHHhcC
Confidence 234678899999999998 999999999987632 124578899999998 899999999999998753
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002424 866 QVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 901 (924)
Q Consensus 866 ~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f 901 (924)
.....++..+|.++...|+.+++.++....
T Consensus 336 ------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 336 ------PEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp ------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred ------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223568899999999999998876654433
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-11 Score=142.07 Aligned_cols=239 Identities=15% Similarity=0.028 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++..++..+...|++++|...++++....+. +...+.. + ...+...|++++|..+++++..+.+ .
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~---l-~~~~~~~g~~~~A~~~~~~~~~~~~----~---- 405 (597)
T 2xpi_A 340 DVYPLHLASLHESGEKNKLYLISNDLVDRHPE--KAVTWLA---V-GIYYLCVNKISEARRYFSKSSTMDP----Q---- 405 (597)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--SHHHHHH---H-HHHHHHTTCHHHHHHHHHHHHHHCT----T----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc--cHHHHHH---H-HHHHHHhccHHHHHHHHHHHHHhCC----C----
Confidence 45677888888999999999999988866442 1111211 1 1677899999999999999988522 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
...++..++.++...|++++|++.+++++.... ....++..+|.++.+.|++++|+..+.+++.+...
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------ 473 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ------GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY------ 473 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------
Confidence 346788999999999999999999999886421 23567888999999999999999999999876321
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHH-HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLEL-RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~-~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
...+...++.++...|+. ++|++++++++......+.... .+.++..+|.++.. .|++++|+.+++++++.
T Consensus 474 ~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDM--QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK------LKMYDAAIDALNQGLLL 545 (597)
T ss_dssp CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH------hcCHHHHHHHHHHHHHh
Confidence 235678899999999998 9999999999988766443222 37899999999999 89999999999999876
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 865 LQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 865 f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
.. ....++..++.+|...|+.+++.++.....++
T Consensus 546 ~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 546 ST------NDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 41 23478999999999999999877766555443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-11 Score=145.12 Aligned_cols=242 Identities=12% Similarity=0.003 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
....++..++..+...|+|++|...++++.+..+...... ..+. ..+...|++++|..+++++....+ +
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~l~-----~~~~~~g~~~~A~~~~~~~~~~~~-----~ 371 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVY-PLHL-----ASLHESGEKNKLYLISNDLVDRHP-----E 371 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTH-HHHH-----HHHHHHTCHHHHHHHHHHHHHHCT-----T
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHH-HHHH-----HHHHHhCCHHHHHHHHHHHHhhCc-----c
Confidence 3467788999999999999999999999998765422211 1111 456789999999999999987422 1
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~ 782 (924)
...+...++.++...|++++|++.+++++... .....++..+|.++.+.|++++|+..+.+++.+...
T Consensus 372 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 439 (597)
T 2xpi_A 372 ---KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG--- 439 (597)
T ss_dssp ---SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT---
T ss_pred ---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---
Confidence 35778889999999999999999999998742 123567889999999999999999999998866321
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 002424 783 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQAS 862 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~ 862 (924)
...+...++.++...|.. ++|++++++++... -. ...++..+|.++.. .|++++|+.++++++
T Consensus 440 ---~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~--~~----~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 440 ---THLPYLFLGMQHMQLGNI--LLANEYLQSSYALF--QY----DPLLLNELGVVAFN------KSDMQTAINHFQNAL 502 (597)
T ss_dssp ---CSHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHC--CC----CHHHHHHHHHHHHH------TTCHHHHHHHHHHHH
T ss_pred ---chHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC--CC----ChHHHHHHHHHHHH------hCCHHHHHHHHHHHH
Confidence 235677899999999998 99999999997642 12 24678899999999 899999999999999
Q ss_pred HHHHhhcC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 863 EELQVLED-HELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 863 ~~f~~l~~-~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
+.....+. +.....++..++.++...|+.+++.++.....++
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 98876553 3334789999999999999999877765554433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-12 Score=137.18 Aligned_cols=220 Identities=16% Similarity=0.015 Sum_probs=181.6
Q ss_pred HHccCHHHHHHHHHHHHHHhhccC--c-hHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHH
Q 002424 636 AVFKGYKEAFSALKIAEEKFLSVS--K-SRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLR 712 (924)
Q Consensus 636 a~~G~y~eA~~~L~~a~~~f~~~~--~-~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~ 712 (924)
...|++++|...++++.+.+.... + .....+...++ ..+...|++++|...+.+++.+.....+.|......+...
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILA-LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 346889999999999999876542 2 22222221222 7888999999999999999998765533355567899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHccc--chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh--CCcHHHHH
Q 002424 713 HARTLLAANQFSEAAAVAHSLFCMCYKFNL--QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL--NLDLLKAS 788 (924)
Q Consensus 713 ~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd--~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~--g~~~~~A~ 788 (924)
+|.++...|++++|++.+++++..+++.+. ......++..+|.++...|++++|+..+.+++.++... .+....+.
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999999998877644 36678899999999999999999999999999998766 44677889
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhC-------------------------------------------CH
Q 002424 789 ATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG-------------------------------------------GL 825 (924)
Q Consensus 789 al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~g-------------------------------------------d~ 825 (924)
+...+|.++..+|+. ++|+.++++++......+ +.
T Consensus 171 ~~~~la~~~~~~g~~--~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (283)
T 3edt_B 171 TKNNLASCYLKQGKY--QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS 248 (283)
T ss_dssp HHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC
T ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC
Confidence 999999999999998 999999999998865432 34
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 826 ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 826 ~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
...+.++..+|.++.. .|++++|+.++++|++.
T Consensus 249 ~~~~~~~~~la~~~~~------~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 PTVNTTLRSLGALYRR------QGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHh
Confidence 6678889999999999 89999999999999864
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-12 Score=125.56 Aligned_cols=161 Identities=12% Similarity=0.037 Sum_probs=153.7
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
|+...+.+...+|.++...|++++|++.+++++..+...++....+.++..+|.++...|++++|+.++.+++.++...+
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 77788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
++...+.+...+|.++...|+. ++|...+++++......++....+.++..+|.++.. .|++++|+.++++|
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDY--EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA------LGNHDQAMHFAEKH 155 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------HTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH------ccCHHHHHHHHHHH
Confidence 9999999999999999999998 999999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHhhcC
Q 002424 862 SEELQVLED 870 (924)
Q Consensus 862 ~~~f~~l~~ 870 (924)
++.++++++
T Consensus 156 ~~~~~~~~d 164 (164)
T 3ro3_A 156 LEISREVGD 164 (164)
T ss_dssp HHHHTTC--
T ss_pred HHHHHHhCC
Confidence 999987654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-12 Score=141.81 Aligned_cols=231 Identities=8% Similarity=-0.094 Sum_probs=178.8
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
.+..+..+...|.++...|+|++|...++++.+.++..++.......+...+..+...|++++|..++++++.+.+..+
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g- 111 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG- 111 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-
Confidence 3444555666677888999999999999999999988876543222223223788899999999999999999988777
Q ss_pred CCcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 701 VDMDLKTEASLRHARTLLAA-NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~-G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
|+...+.++.++|.++... |++++|++.+++++.+....++....+.++..+|.++...|++++|+..+.+++.+...
T Consensus 112 -~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 112 -QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred -CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 7777889999999999996 99999999999999999888877777889999999999999999999999999998766
Q ss_pred hCCc-HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHH
Q 002424 780 LNLD-LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPL 858 (924)
Q Consensus 780 ~g~~-~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L 858 (924)
.+.. +..+.++..+|.++..+|+. ++|+..+++++.+--.+++. .++..+..++.++... + .+.+.+|+..+
T Consensus 191 ~~~~~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~l~p~~~~~-~~~~~l~~l~~~~~~~-~---~~~~~~A~~~~ 263 (292)
T 1qqe_A 191 NRLSQWSLKDYFLKKGLCQLAATDA--VAAARTLQEGQSEDPNFADS-RESNFLKSLIDAVNEG-D---SEQLSEHCKEF 263 (292)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCH--HHHHHHHHGGGCC----------HHHHHHHHHHHHTT-C---TTTHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHHHcC-C---HHHHHHHHHHh
Confidence 5553 45667888899999999998 99999999998876665543 2345666666665421 1 34445544444
Q ss_pred HH
Q 002424 859 RQ 860 (924)
Q Consensus 859 ~~ 860 (924)
++
T Consensus 264 ~~ 265 (292)
T 1qqe_A 264 DN 265 (292)
T ss_dssp TT
T ss_pred cc
Confidence 43
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6.3e-11 Score=134.80 Aligned_cols=246 Identities=13% Similarity=0.023 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++..+|.++...|++++|...++++.+..+... ..+. .+ ...+...|++++|...+++++.+.+. ++.
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~---~l-~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~ 246 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLKNDNT--EAFY---KI-STLYYQLGDHELSLSEVRECLKLDQD----HKR 246 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH--HHHH---HH-HHHHHHTTCHHHHHHHHHHHHHHCTT----CHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHH---HH-HHHHHHcCCHHHHHHHHHHHHHhCCC----hHH
Confidence 46788999999999999999999999998765321 1111 11 15778899999999999999886331 211
Q ss_pred hH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 705 LK--------TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 705 ~~--------a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
.. .......+.++...|++++|++.+++++.... .+......++..+|.++.+.|+++.|+..+.+++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP--SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 11 11124459999999999999999999988532 233444678999999999999999999999999887
Q ss_pred HHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcC-----CC-CCCC--
Q 002424 777 CQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSD-----PS-FSVS-- 848 (924)
Q Consensus 777 a~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~-----~~-~~~~-- 848 (924)
.. ..+.++..+|.++...|+. ++|+..+++++..-- .+ ..++..++++.... .+ ....
T Consensus 325 ~p------~~~~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~p--~~----~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 325 EP------DNVNALKDRAEAYLIEEMY--DEAIQDYETAQEHNE--ND----QQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp CT------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTSS--SC----HHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred Cc------ccHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhCc--ch----HHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 32 1246788899999999998 999999999987422 12 33445555332220 00 0012
Q ss_pred ---CChHHHHHHHHH-HHHHHHhh-cCH---HHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 849 ---QNPEAVLDPLRQ-ASEELQVL-EDH---ELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 849 ---g~~~~Al~~L~~-A~~~f~~l-~~~---~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
.+..++...+++ |+...-.. ... ......+..++.+|..+||++.|..
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred CccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 244566666665 43322111 111 3345566677777777777666543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.7e-11 Score=135.55 Aligned_cols=211 Identities=13% Similarity=0.045 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++..+|..+...|++++|...++.+....+.... .+. .+ ...+...|++.+|...+++++.+.+.
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~---~l-~~~~~~~~~~~~A~~~~~~~~~~~~~------- 336 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSS--VYY---HR-GQMNFILQNYDQAGKDFDKAKELDPE------- 336 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTH--HHH---HH-HHHHHHTTCTTHHHHHHHHHHHTCSS-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHH--HHH---HH-HHHHHHhCCHHHHHHHHHHHHHhChh-------
Confidence 678899999999999999999999999877654332 111 11 15778899999999999999886331
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
...+...++.++...|++++|+..+++++..... ...++..+|.++...|+++.|+..+.+++.+........
T Consensus 337 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 409 (514)
T 2gw1_A 337 -NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE------APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409 (514)
T ss_dssp -CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS
T ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH
Confidence 2457889999999999999999999999875321 246788999999999999999999999999887665544
Q ss_pred HHHHHHHHHHHHHHH---cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLS---FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 785 ~~A~al~~La~l~~~---lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
..+.+...+|.++.. .|+. ++|+..+++++...- ....++..+|.++.. .|++.+|+.++++|
T Consensus 410 ~~~~~~~~l~~~~~~~~~~~~~--~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~------~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 410 VGIAPLVGKATLLTRNPTVENF--IEATNLLEKASKLDP------RSEQAKIGLAQMKLQ------QEDIDEAITLFEES 475 (514)
T ss_dssp SCSHHHHHHHHHHHTSCCTTHH--HHHHHHHHHHHHHCT------TCHHHHHHHHHHHHH------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcCCH--HHHHHHHHHHHHhCc------ccHHHHHHHHHHHHH------hcCHHHHHHHHHHH
Confidence 445578899999999 8987 999999999987532 124678899999999 89999999999999
Q ss_pred HHHHHhhc
Q 002424 862 SEELQVLE 869 (924)
Q Consensus 862 ~~~f~~l~ 869 (924)
++....-.
T Consensus 476 ~~~~~~~~ 483 (514)
T 2gw1_A 476 ADLARTME 483 (514)
T ss_dssp HHHCSSHH
T ss_pred HHhccccH
Confidence 98765433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.3e-11 Score=138.16 Aligned_cols=245 Identities=12% Similarity=-0.030 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCC
Q 002424 622 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 622 d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
.....++..+|..+...|+|++|...++++.+..+. ...+. .+ ...+...|++.+|...+++++.+.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~---~l-~~~~~~~~~~~~A~~~~~~~~~~~~~---- 302 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR---VNSYI---YM-ALIMADRNDSTEYYNYFDKALKLDSN---- 302 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC---HHHHH---HH-HHHHHTSSCCTTGGGHHHHHHTTCTT----
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc---HHHHH---HH-HHHHHHCCCHHHHHHHHHHHhhcCcC----
Confidence 466788999999999999999999999999988764 21111 11 16778999999999999999885321
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
...+...++.++...|++++|+..+++++..... ...++..+|.++...|+++.|+..+.+++.+...
T Consensus 303 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-- 370 (514)
T 2gw1_A 303 ----NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE------NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-- 370 (514)
T ss_dssp ----CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS------CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT--
T ss_pred ----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc--
Confidence 2457889999999999999999999999874221 2458889999999999999999999999876432
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
...+...+|.++...|+. ++|+..+++++...-..+.....+.++..+|.++.... ..|++++|+.++++|
T Consensus 371 ----~~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 371 ----APEVPNFFAEILTDKNDF--DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP---TVENFIEATNLLEKA 441 (514)
T ss_dssp ----CSHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC---CTTHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh---hcCCHHHHHHHHHHH
Confidence 135678899999999998 99999999999887766654444568888998888610 038899999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 862 SEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 862 ~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
+.... ....++..+|.++...|+.+++.++.....++
T Consensus 442 ~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 442 SKLDP------RSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCc------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 88642 22467889999999999999877655544443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-11 Score=142.22 Aligned_cols=240 Identities=13% Similarity=-0.005 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+.++..+|..+...|++++|...++.+.+..|. ...+. .+ +..+...|++.+|...+.+++.+.+ +
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~---~l-~~~~~~~~~~~~A~~~~~~~~~~~~-----~- 308 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPT---PNSYI---FL-ALTLADKENSQEFFKFFQKAVDLNP-----E- 308 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---HHHHH---HH-HHHTCCSSCCHHHHHHHHHHHHHCT-----T-
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC---chHHH---HH-HHHHHHhcCHHHHHHHHHHHhccCC-----C-
Confidence 4678999999999999999999999999987664 22111 11 1567789999999999999988633 1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
...+...+|.++...|++++|++.+++++..... ...++..+|.++...|+++.|+..+.+++.+...
T Consensus 309 --~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---- 376 (537)
T 3fp2_A 309 --YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE------NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT---- 376 (537)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Confidence 3567899999999999999999999999885321 2467889999999999999999999999887422
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCC----------CChHH
Q 002424 784 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVS----------QNPEA 853 (924)
Q Consensus 784 ~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~----------g~~~~ 853 (924)
...+...+|.++...|+. ++|+..+++++...-...........+..+|.++.. . |++.+
T Consensus 377 --~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~------~~~~~~~~~~~~~~~~ 446 (537)
T 3fp2_A 377 --LPEVPTFFAEILTDRGDF--DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR------QSSQDPTQLDEEKFNA 446 (537)
T ss_dssp --CTHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH------HHTC----CCHHHHHH
T ss_pred --ChHHHHHHHHHHHHhCCH--HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH------HhhccchhhhHhHHHH
Confidence 135677899999999998 999999999999887776655444455666666666 5 89999
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 854 VLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 854 Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
|+.++++|++.... ...++..+|.+|...|+.+++.++.....++
T Consensus 447 A~~~~~~a~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 447 AIKLLTKACELDPR------SEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999886432 2378899999999999999877655444433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.48 E-value=4.6e-11 Score=135.97 Aligned_cols=209 Identities=11% Similarity=-0.006 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.....+|..+...|+|++|...++.+.+..|... ..+. .+ ...+...|++++|...+++++.+.+ +
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~---~l-~~~~~~~g~~~~A~~~~~~~~~~~~-----~--- 209 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA--ELRE---LR-AECFIKEGEPRKAISDLKAASKLKN-----D--- 209 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHH---HH-HHHHHHTTCGGGGHHHHHHHHHHHC-----S---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHH---HH-HHHHHHCCCHHHHHHHHHHHHHhCC-----C---
Confidence 3456678888899999999999999998765321 1111 11 1677899999999999999988633 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccch------hHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV------ENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~------~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
...++..++.++...|++++|++.+++++.......... ........+|.++...|++..|+..+.+++.+..
T Consensus 210 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p- 288 (450)
T 2y4t_A 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP- 288 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-
Confidence 357889999999999999999999999986432111110 0112335569999999999999999999988642
Q ss_pred hCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 002424 780 LNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR 859 (924)
Q Consensus 780 ~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~ 859 (924)
.++.....+...+|.++..+|+. ++|+..+++++..-- ..+.++..+|.++.. .|++++|+.+++
T Consensus 289 -~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~------~~~~~~A~~~~~ 353 (450)
T 2y4t_A 289 -SIAEYTVRSKERICHCFSKDEKP--VEAIRVCSEVLQMEP------DNVNALKDRAEAYLI------EEMYDEAIQDYE 353 (450)
T ss_dssp -SSHHHHHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHCT------TCHHHHHHHHHHHHH------TTCHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCc------ccHHHHHHHHHHHHH------hcCHHHHHHHHH
Confidence 34455567888899999999998 999999999987621 134788999999999 899999999999
Q ss_pred HHHHH
Q 002424 860 QASEE 864 (924)
Q Consensus 860 ~A~~~ 864 (924)
+|++.
T Consensus 354 ~al~~ 358 (450)
T 2y4t_A 354 TAQEH 358 (450)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 99763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-11 Score=137.75 Aligned_cols=274 Identities=12% Similarity=-0.029 Sum_probs=192.8
Q ss_pred HHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHH
Q 002424 587 SYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL 666 (924)
Q Consensus 587 ~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l 666 (924)
.....+..+-..|.-.-+.-...-.+....+ ...++.++|..+...|+|++|...++++.+..|... ..+.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~- 137 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPG------DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL--KALM- 137 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHH-
Confidence 3666666666666555554444443433222 257899999999999999999999998888755321 1111
Q ss_pred HHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q 002424 667 KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK----TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL 742 (924)
Q Consensus 667 ~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~----a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd 742 (924)
.+ +..+...|++++|...+++++.+.+... +.... ......++.++...|++++|++.+++++....
T Consensus 138 --~l-~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---- 208 (365)
T 4eqf_A 138 --AL-AVSYTNTSHQQDACEALKNWIKQNPKYK--YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG---- 208 (365)
T ss_dssp --HH-HHHHHHTTCHHHHHHHHHHHHHHCHHHH--CC-------------------CCHHHHHHHHHHHHHHHHSC----
T ss_pred --HH-HHHHHccccHHHHHHHHHHHHHhCccch--HHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc----
Confidence 11 1577789999999999999888644211 11000 22334568888889999999999998887522
Q ss_pred chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh
Q 002424 743 QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH 822 (924)
Q Consensus 743 ~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~ 822 (924)
......++..+|.++...|++++|+..+.+++.+... .+.++..+|.++...|+. ++|+..+++++...-.
T Consensus 209 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p~- 279 (365)
T 4eqf_A 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE------DYSLWNRLGATLANGDRS--EEAVEAYTRALEIQPG- 279 (365)
T ss_dssp SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCTT-
T ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCC-
Confidence 1124678899999999999999999999999987432 245788899999999998 9999999999876221
Q ss_pred CCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCH------HHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 823 GGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDH------ELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 823 gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~------~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
.+.++..+|.++.. .|++.+|+.++++|++.......+ .....++..++.++...|+.+.+.+
T Consensus 280 -----~~~~~~~l~~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 280 -----FIRSRYNLGISCIN------LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp -----CHHHHHHHHHHHHH------HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred -----chHHHHHHHHHHHH------CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 26789999999999 899999999999999998776553 3347889999999999999988665
Q ss_pred HH
Q 002424 897 AA 898 (924)
Q Consensus 897 aa 898 (924)
+.
T Consensus 349 ~~ 350 (365)
T 4eqf_A 349 AN 350 (365)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-10 Score=126.41 Aligned_cols=209 Identities=11% Similarity=-0.020 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
....+|..+...|+|++|...++.+.+..|... ..+. .+ +..+...|++++|...+.+++.+.+ . .
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~---~~-~~~~~~~~~~~~A~~~~~~~~~~~~----~----~ 187 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDA--ELRE---LR-AECFIKEGEPRKAISDLKAASKLKS----D----N 187 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH---HH-HHHHHHTTCHHHHHHHHHHHHTTCS----C----C
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch--HHHH---HH-HHHHHHCCCHHHHHHHHHHHHHhCC----C----C
Confidence 355678888999999999999999998766321 1111 11 1677899999999999999988522 1 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccch------hHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV------ENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~------~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
..+...+|.++...|++++|++.+++++.......... ........+|.++...|++++|+..+.+++....
T Consensus 188 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-- 265 (359)
T 3ieg_A 188 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-- 265 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--
Confidence 47889999999999999999999999987533221111 1123456779999999999999999999988753
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 002424 781 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 860 (924)
Q Consensus 781 g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~ 860 (924)
.++.....+...+|.++...|+. ++|+..+++++..- . ....++..+|.++.. .|++++|+.++++
T Consensus 266 ~~~~~~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~---~---~~~~~~~~~~~~~~~------~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 266 SVAEYTVRSKERICHCFSKDEKP--VEAIRICSEVLQME---P---DNVNALKDRAEAYLI------EEMYDEAIQDYEA 331 (359)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC---T---TCHHHHHHHHHHHHH------TTCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhC---c---ccHHHHHHHHHHHHH------cCCHHHHHHHHHH
Confidence 34556667788899999999998 99999999998762 1 125688999999999 8999999999999
Q ss_pred HHHHH
Q 002424 861 ASEEL 865 (924)
Q Consensus 861 A~~~f 865 (924)
|++..
T Consensus 332 a~~~~ 336 (359)
T 3ieg_A 332 AQEHN 336 (359)
T ss_dssp HHTTC
T ss_pred HHhcC
Confidence 98764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.41 E-value=9.5e-12 Score=137.42 Aligned_cols=271 Identities=13% Similarity=-0.037 Sum_probs=196.2
Q ss_pred HHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHH
Q 002424 587 SYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL 666 (924)
Q Consensus 587 ~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l 666 (924)
.....+..+-..|.-.-+.-...-.+.... ....++.++|.++...|+|++|...++++.+..|.... .+.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~- 136 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDP------KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT--ALM- 136 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHH--HHH-
Confidence 466666666666665555444443333211 12467888999999999999999999998887653211 111
Q ss_pred HHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHH------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002424 667 KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT------------EASLRHARTLLAANQFSEAAAVAHSLF 734 (924)
Q Consensus 667 ~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a------------~a~~~~a~ll~~~G~~~eAl~~l~~aL 734 (924)
.+ ...+...|++.+|...+.+++.+.+. +..... ......+.++ ..|++++|++.+++++
T Consensus 137 --~l-~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~ 208 (368)
T 1fch_A 137 --AL-AVSFTNESLQRQACEILRDWLRYTPA----YAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAV 208 (368)
T ss_dssp --HH-HHHHHHTTCHHHHHHHHHHHHHTSTT----TGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHH
T ss_pred --HH-HHHHHHcCCHHHHHHHHHHHHHhCcC----cHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHH
Confidence 11 15677899999999999998886432 211111 0011355555 8899999999999888
Q ss_pred HHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 002424 735 CMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQ 814 (924)
Q Consensus 735 ~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~ 814 (924)
..... .....++..+|.++...|+++.|+..+.+++.+... ...++..+|.++...|+. ++|+..+++
T Consensus 209 ~~~p~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~--~~A~~~~~~ 276 (368)
T 1fch_A 209 RLDPT----SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------DYLLWNKLGATLANGNQS--EEAVAAYRR 276 (368)
T ss_dssp HHSTT----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHH
T ss_pred HhCcC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHcCCH--HHHHHHHHH
Confidence 75221 114778899999999999999999999999987421 246788899999999998 999999999
Q ss_pred HHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHH-----HHHHHHHHHHHHhcC
Q 002424 815 ALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELA-----AEAFYLIAIVFDKLG 889 (924)
Q Consensus 815 aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~-----~~vl~~lA~l~~~lG 889 (924)
++..-- ....++..+|.++.. .|++.+|+.++++|+........+... ..++..+|.++..+|
T Consensus 277 al~~~~------~~~~~~~~l~~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 277 ALELQP------GYIRSRYNLGISCIN------LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp HHHHCT------TCHHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred HHHhCC------CcHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 987521 235688999999999 899999999999999998777555544 789999999999999
Q ss_pred CHHHHHHHH
Q 002424 890 RLAEREEAA 898 (924)
Q Consensus 890 d~~~r~~aa 898 (924)
+.+++..+.
T Consensus 345 ~~~~A~~~~ 353 (368)
T 1fch_A 345 QSDAYGAAD 353 (368)
T ss_dssp CGGGHHHHH
T ss_pred ChHhHHHhH
Confidence 999877643
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-11 Score=125.79 Aligned_cols=234 Identities=12% Similarity=-0.015 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
..+.++..+|..+...|+|++|...++.+.+.. .+...+.. + +..+...|++.+|...+.+++.+.+... .+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~---~-~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~ 74 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNN---R-AAAEYEKGEYETAISTLNDAVEQGREMR-AD 74 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHH---H-HHHHHHTTCHHHHHHHHHHHHHHHHHTT-CC
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHH---H-HHHHHHcccHHHHHHHHHHHHHhCcccc-cc
Confidence 457889999999999999999999999999876 22222211 1 1677899999999999999999865432 13
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------------cccchhHHHHHHHHHHHHHhcCC
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK--------------------FNLQVENASVLLLLAEIHKKSGN 762 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~--------------------~gd~~~~a~al~~la~i~~~~G~ 762 (924)
......+...+|.++...|++++|++.+++++..... .........++..+|.++...|+
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 2334789999999999999999999999999873211 11334457789999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcC
Q 002424 763 AVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSD 842 (924)
Q Consensus 763 ~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~ 842 (924)
++.|+..+.+++.+... ...+...+|.++..+|+. ++|+..+++++..-- ....++..+|.++..
T Consensus 155 ~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~- 219 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSF--PEAIADCNKAIEKDP------NFVRAYIRKATAQIA- 219 (258)
T ss_dssp HHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCT------TCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhCH------HHHHHHHHHHHHHHH-
Confidence 99999999999887532 246788899999999998 999999999987532 125678899999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 002424 843 PSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIV 884 (924)
Q Consensus 843 ~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l 884 (924)
.|++.+|+.++++|++.....+......++...++.+
T Consensus 220 -----~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 220 -----VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred -----HhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 8999999999999999987776655556666655543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-11 Score=134.51 Aligned_cols=202 Identities=13% Similarity=0.010 Sum_probs=170.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|+|.+|...+.+++...+... +........+.++.++...|++++|++.+++++.......+....+.++..
T Consensus 83 ~~~~~~~~y~~A~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 83 IMLCKQKRYKEIYNKVWNELKKEEYHP--EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCCCH--HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHhccccCCh--hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 455678888888888877776433211 222344556778899999999999999999999877666777778999999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH-HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL-KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARA 831 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~-~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a 831 (924)
+|.++...|++++|+.++.+|+.++........ .+.++.++|.++..+|+. ++|+.++++++......++....+.+
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y--~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY--EESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH--HHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 999999999999999999999999988776544 448999999999999998 99999999999999888888889999
Q ss_pred HHHHHHhhhcCCCCCCCCChHHH-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 002424 832 FIAEAKCLLSDPSFSVSQNPEAV-LDPLRQASEELQVLEDHELAAEAFYLIAIV 884 (924)
Q Consensus 832 ~~~LAr~~la~~~~~~~g~~~~A-l~~L~~A~~~f~~l~~~~~~~~vl~~lA~l 884 (924)
++.+|.++.. .|++++| ..++++|+.+++..++......+-....++
T Consensus 239 ~~~lg~~y~~------~g~~~~Ai~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~ 286 (293)
T 2qfc_A 239 YYQRGECLRK------LEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRL 286 (293)
T ss_dssp HHHHHHHHHH------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH------cCCcHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHH
Confidence 9999999999 8999999 889999999999999988866665555554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=4e-11 Score=114.68 Aligned_cols=158 Identities=15% Similarity=0.061 Sum_probs=148.2
Q ss_pred cccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 740 FNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 740 ~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
.+++...+.++..+|.++...|+++.|+..+.+++.++...++....+.+...+|.++..+|+. ++|+.++++++...
T Consensus 2 ~~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~ 79 (164)
T 3ro3_A 2 PGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEF--ETASEYYKKTLLLA 79 (164)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHH
Confidence 3677888999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred HhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002424 820 LGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAA 899 (924)
Q Consensus 820 l~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~ 899 (924)
...++....+.++..+|.++.. .|++++|+.++++|++.+...+++.....++..+|.++...|+.+++.++..
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 80 RQLKDRAVEAQSCYSLGNTYTL------LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999999999999999 8999999999999999999999999999999999999999999999887766
Q ss_pred HHHHHH
Q 002424 900 LFKEYV 905 (924)
Q Consensus 900 ~f~~l~ 905 (924)
...++.
T Consensus 154 ~a~~~~ 159 (164)
T 3ro3_A 154 KHLEIS 159 (164)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655553
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-11 Score=128.61 Aligned_cols=240 Identities=13% Similarity=-0.017 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
++.+.|..+...|+|++|...++++.+..|...... ..+. ..+...|++.+|...+.+++.. + .++...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-~~l~-----~~~~~~~~~~~A~~~~~~a~~~-~----~~~~~~ 73 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIY-NRRA-----VCYYELAKYDLAQKDIETYFSK-V----NATKAK 73 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTH-HHHH-----HHHHHTTCHHHHHHHHHHHHTT-S----CTTTCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH-HHHH-----HHHHHHhhHHHHHHHHHHHHhc-c----CchhHH
Confidence 467889999999999999999999998876543321 1112 5778999999999999999873 2 255556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 786 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 786 (924)
..+...+|.++...|++++|++.+++++.... ....++..+|.++...|++++|+..+.+++.+. ...
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------~~~ 141 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDT------TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT------TTD 141 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS------CCC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC------CCc
Confidence 78899999999999999999999999988532 224688999999999999999999999998872 122
Q ss_pred HHHHHHHH-HHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCC---hHHHHHHHHHHH
Q 002424 787 ASATLTLA-ELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQN---PEAVLDPLRQAS 862 (924)
Q Consensus 787 A~al~~La-~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~---~~~Al~~L~~A~ 862 (924)
..+...+| .++. .+.. ++|+..+++++...-.. ..++..+|.++.. .++ +++|+.++++|+
T Consensus 142 ~~~~~~l~~~~~~-~~~~--~~A~~~~~~a~~~~p~~------~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 142 PKVFYELGQAYYY-NKEY--VKADSSFVKVLELKPNI------YIGYLWRARANAA------QDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHHHHHH-TTCH--HHHHHHHHHHHHHSTTC------HHHHHHHHHHHHH------HSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHhCccc------hHHHHHHHHHHHH------cCcchhhHHHHHHHHHHH
Confidence 45677788 5554 4555 99999999998764322 4677788888887 555 888999999999
Q ss_pred HHHHhhcC--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 863 EELQVLED--HELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 863 ~~f~~l~~--~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
+......+ .....+++..+|.+|...|+.+.+.++.....++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99987777 5667789999999999999999987766655544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.9e-11 Score=135.41 Aligned_cols=233 Identities=10% Similarity=-0.039 Sum_probs=202.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhhccCchH---------H-H-HHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhc
Q 002424 629 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR---------I-L-LLKLQLLHERSLHRGHLKLAQKVCDELGVMASS 697 (924)
Q Consensus 629 ~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~---------~-~-~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~ 697 (924)
...|..+...|+|++|.+.+..+....+..++.. . + .-++...+..+...|+|++|.+++.+++.+.+.
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4457778889999999999999998877655421 0 1 011111227888999999999999999998776
Q ss_pred cCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 698 VTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 698 ~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
.+ +......+...++.++...|+++.|++.++.++..+...++....+++...+|.++...|++.+|+..+.+++..+
T Consensus 88 ~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 88 FA--KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp SC--HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cc--chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 65 5555667778888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCC-HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 002424 778 QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG-LELRARAFIAEAKCLLSDPSFSVSQNPEAVLD 856 (924)
Q Consensus 778 ~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd-~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~ 856 (924)
....+....+.+...++.++..+|+. .+|..++++++......++ ....+..+..+|..+.. .+++.+|..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~y~~A~~ 237 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNL--AKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCE------DKDYKTAFS 237 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS------SSCHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH------HHhHHHHHH
Confidence 99999999999999999999999998 9999999999999887765 57789999999999999 899999999
Q ss_pred HHHHHHHHHHhhcCH
Q 002424 857 PLRQASEELQVLEDH 871 (924)
Q Consensus 857 ~L~~A~~~f~~l~~~ 871 (924)
++.+|++.+...+..
T Consensus 238 ~~~~a~~~~~~~~~~ 252 (434)
T 4b4t_Q 238 YFFESFESYHNLTTH 252 (434)
T ss_dssp HHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhhhhhh
Confidence 999999999988764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-11 Score=133.33 Aligned_cols=192 Identities=12% Similarity=0.032 Sum_probs=167.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK--TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVL 750 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~--a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al 750 (924)
..++..|+|.+|..++.+++..... ++... ......++.++...|++++|+..+++++......++....+.++
T Consensus 83 ~~~~~~~~y~~a~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 83 IMLCKQKRYKEIYNKVWNELKKEEY----HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhccccC----ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 4667888999999988888774221 22222 34455688888899999999999999999766677778889999
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHH
Q 002424 751 LLLAEIHKKSGNAVLGIPYALASLSFCQLL-NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRA 829 (924)
Q Consensus 751 ~~la~i~~~~G~~~~Al~~l~~AL~la~~~-g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A 829 (924)
..+|.+|...|+++.|+.++.+|+.+.... ++....+.++.++|.++..+|+. ++|+.++++++......++....+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y--~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY--EESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHcCcHHHHH
Confidence 999999999999999999999999999888 78889999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCC-hHHHHHHHHHHHHHHHhhcCHHHHHH
Q 002424 830 RAFIAEAKCLLSDPSFSVSQN-PEAVLDPLRQASEELQVLEDHELAAE 876 (924)
Q Consensus 830 ~a~~~LAr~~la~~~~~~~g~-~~~Al~~L~~A~~~f~~l~~~~~~~~ 876 (924)
.++..+|.++.. .|+ .++|+.++++|+.+++..++......
T Consensus 237 ~~~~~lg~~~~~------~g~~~~~A~~~~~~Al~i~~~~~~~~~~~~ 278 (293)
T 3u3w_A 237 QLYYQRGECLRK------LEYEEAEIEDAYKKASFFFDILEMHAYKEA 278 (293)
T ss_dssp HHHHHHHHHHHH------TTCCHHHHHHHHHHHHHHHHHTTCTGGGGG
T ss_pred HHHHHHHHHHHH------hCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999 885 59999999999999999998765443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-10 Score=124.28 Aligned_cols=209 Identities=9% Similarity=-0.084 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
....+.+.+..+...|+|++|...++.+.+..+...............+..+...|++++|...+.+++.+..... |+
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~ 151 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--DV 151 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS--CT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC--ch
Confidence 3455667788889999999999999998887554222211111111122566788999999999999998755433 66
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchh-HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE-NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~-~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~ 782 (924)
...+.+...+|.++...|+|++|++.+++++..++...+... .+.++..+|.++...|++++|+.++.+|+.++...++
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 667889999999999999999999999999998887665443 3489999999999999999999999999999998888
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHH-HHHHHHHHhHHHhhCCHHHHHHHHHHHH
Q 002424 783 DLLKASATLTLAELWLSFGPNHAKMA-SNLIQQALPLILGHGGLELRARAFIAEA 836 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~~~~~A-l~lLe~aLp~vl~~gd~~~~A~a~~~LA 836 (924)
....+.+...+|.++..+|+. ++| ...++.++......++....-..-....
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~--~~Ai~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 284 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYE--EAEIEDAYKKASFFFDILEMHAYKEALVNKIS 284 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHH
Confidence 888999999999999999999 999 8889999999999999777444433333
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-10 Score=126.01 Aligned_cols=261 Identities=13% Similarity=0.010 Sum_probs=198.7
Q ss_pred HHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhh
Q 002424 591 RATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQL 670 (924)
Q Consensus 591 ~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l 670 (924)
.+..+-.-|.-.-+.-...-.+....+.. .++..++..+...|++++|...++++.+..|.... .+.. +
T Consensus 28 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~---l 96 (330)
T 3hym_B 28 LAERHYYNCDFKMCYKLTSVVMEKDPFHA------SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV--SWFA---V 96 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCT------TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH--HHHH---H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCh------hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH--HHHH---H
Confidence 33444444655544443332333222222 34566777888999999999999999987653322 2211 1
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHH
Q 002424 671 LHERSLHRG-HLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASV 749 (924)
Q Consensus 671 ~~~~al~~G-~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~a 749 (924)
+..+...| ++++|...+++++.+.+. ...++..+|.++...|++++|++.+++++..... ...+
T Consensus 97 -~~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~ 161 (330)
T 3hym_B 97 -GCYYLMVGHKNEHARRYLSKATTLEKT--------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG------CHLP 161 (330)
T ss_dssp -HHHHHHSCSCHHHHHHHHHHHHTTCTT--------CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT------CSHH
T ss_pred -HHHHHHhhhhHHHHHHHHHHHHHhCCc--------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc------cHHH
Confidence 15778899 999999999999886331 2467889999999999999999999999885332 2455
Q ss_pred HHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH---H
Q 002424 750 LLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL---E 826 (924)
Q Consensus 750 l~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~---~ 826 (924)
+..+|.++...|+++.|+..+.+++.+... ...+...+|.++...|+. ++|+..+++++......++. .
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~ 233 (330)
T 3hym_B 162 MLYIGLEYGLTNNSKLAERFFSQALSIAPE------DPFVMHEVGVVAFQNGEW--KTAEKWFLDALEKIKAIGNEVTVD 233 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHTTTSCSCTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcccH--HHHHHHHHHHHHHhhhcccccccc
Confidence 677999999999999999999999877532 246788899999999998 99999999999987666554 2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 002424 827 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 827 ~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~a 897 (924)
..+.++..+|.++.. .|++++|+.++++|++.... ...++..+|.++...|+.+++.++
T Consensus 234 ~~~~~~~~la~~~~~------~g~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 234 KWEPLLNNLGHVCRK------LKKYAEALDYHRQALVLIPQ------NASTYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp TCCHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHSTT------CSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------hcCHHHHHHHHHHHHhhCcc------chHHHHHHHHHHHHhccHHHHHHH
Confidence 336789999999999 89999999999999987532 456889999999999999987764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-10 Score=125.55 Aligned_cols=204 Identities=8% Similarity=-0.087 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCC
Q 002424 622 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 622 d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
.+....+.+.+..+...|+|++|...++.+....+...+...........+..+...|++++|...+.+++.+.....
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~-- 149 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-- 149 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS--
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc--
Confidence 344555667788889999999999999998875443222221111111112566788999999999999999655434
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-ccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF-NLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~-gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
|....+.+...+|.++...|+|++|++.+++++..++.. ++....+.++..+|.++...|++++|+.++.+|+.++...
T Consensus 150 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 666678899999999999999999999999999988887 6777888999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHH
Q 002424 781 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELR 828 (924)
Q Consensus 781 g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~ 828 (924)
++....+.+...+|.++..+|.. +++|+..+++++......|+....
T Consensus 230 ~~~~~~~~~~~~lg~~~~~~g~~-~~~A~~~~~~Al~i~~~~~~~~~~ 276 (293)
T 3u3w_A 230 NSMALIGQLYYQRGECLRKLEYE-EAEIEDAYKKASFFFDILEMHAYK 276 (293)
T ss_dssp TBCTTHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTCTGGG
T ss_pred CcHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999963 489999999999999999985543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.8e-11 Score=128.39 Aligned_cols=239 Identities=9% Similarity=-0.032 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++..+|..+...|+|++|...++++.+..|........ +. ..++..|++.+|...+.+++...+ +
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-~~-----~~~~~~~~~~~A~~~~~~~~~~~~-----~--- 88 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPV-HI-----GTLVELNKANELFYLSHKLVDLYP-----S--- 88 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHH-HH-----HHHHHHTCHHHHHHHHHHHHHHCT-----T---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHH-HH-----HHHHHhhhHHHHHHHHHHHHHhCc-----C---
Confidence 346778888899999999999999999876644332211 11 455788999999999999988532 1
Q ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 706 KTEASLRHARTLLAAN-QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G-~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
...++..+|.++...| ++++|++.+++++... .....++..+|.++...|+++.|+..+.+++.+....
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---- 158 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC---- 158 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC----
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc----
Confidence 3477899999999999 9999999999988642 2235678899999999999999999999999886432
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
..+...+|.++...|+. ++|+.++++++...-. ...++..+|.++.. .|++++|+.++++|+..
T Consensus 159 --~~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~------~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 159 --HLPMLYIGLEYGLTNNS--KLAERFFSQALSIAPE------DPFVMHEVGVVAFQ------NGEWKTAEKWFLDALEK 222 (330)
T ss_dssp --SHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTCTT------CHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhH--HHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH------cccHHHHHHHHHHHHHH
Confidence 24456699999999998 9999999999876422 25788999999999 89999999999999999
Q ss_pred HHhhcCH---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 865 LQVLEDH---ELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 865 f~~l~~~---~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
....+.. .....++..+|.++...|+.+++.++.....++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 8776664 333678999999999999999877755554443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.5e-10 Score=123.34 Aligned_cols=280 Identities=13% Similarity=0.033 Sum_probs=204.2
Q ss_pred HHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhh---ccCchHHH
Q 002424 588 YLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL---SVSKSRIL 664 (924)
Q Consensus 588 ~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~---~~~~~~~~ 664 (924)
....+.++...|...-+.-.....+....+ ...++..+|..+...|+|++|...++.+.+..| ........
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 40 YYRRATVFLAMGKSKAALPDLTKVIALKMD------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence 444445555556554444433222222111 136789999999999999999999999987765 22221110
Q ss_pred H-----H-HHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 002424 665 L-----L-KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 738 (924)
Q Consensus 665 ~-----l-~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~ 738 (924)
. . ........+...|++.+|...+.++....+ + ...+...++.++...|++++|++.+++++...
T Consensus 114 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 184 (359)
T 3ieg_A 114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-----W---DAELRELRAECFIKEGEPRKAISDLKAASKLK- 184 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----C---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 0 0 000112677899999999999999988632 1 35788999999999999999999999988631
Q ss_pred HcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc------HHHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 002424 739 KFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD------LLKASATLTLAELWLSFGPNHAKMASNLI 812 (924)
Q Consensus 739 ~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~------~~~A~al~~La~l~~~lG~~~~~~Al~lL 812 (924)
.....++..+|.++...|+++.|+..+.+++.+....... .........+|.++...|+. ++|+..+
T Consensus 185 -----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~A~~~~ 257 (359)
T 3ieg_A 185 -----SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY--TDATSKY 257 (359)
T ss_dssp -----SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCH--HHHHHHH
Confidence 2235788999999999999999999999998764322111 11122345679999999998 9999999
Q ss_pred HHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHH
Q 002424 813 QQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLA 892 (924)
Q Consensus 813 e~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~ 892 (924)
++++... -.+......++..+|.++.. .|++++|+.+++++++... ....+++.+|.++...|+.+
T Consensus 258 ~~~~~~~--~~~~~~~~~~~~~la~~~~~------~~~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~ 323 (359)
T 3ieg_A 258 ESVMKTE--PSVAEYTVRSKERICHCFSK------DEKPVEAIRICSEVLQMEP------DNVNALKDRAEAYLIEEMYD 323 (359)
T ss_dssp HHHHHHC--CSSHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcC--CCchHHHHHHHHHHHHHHHH------ccCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHcCCHH
Confidence 9998764 34666777889999999999 8999999999999998632 22568999999999999999
Q ss_pred HHHHHHHHHHH
Q 002424 893 EREEAAALFKE 903 (924)
Q Consensus 893 ~r~~aa~~f~~ 903 (924)
++.++.....+
T Consensus 324 ~A~~~~~~a~~ 334 (359)
T 3ieg_A 324 EAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 87766554443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3.3e-10 Score=122.21 Aligned_cols=269 Identities=12% Similarity=-0.043 Sum_probs=193.1
Q ss_pred HHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHH
Q 002424 587 SYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL 666 (924)
Q Consensus 587 ~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l 666 (924)
.....+..+-..|.-.-+.......+....+ ...++..+|..+...|+|++|...++++.+..|... ..+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~- 93 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHA- 93 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH--HHHH-
Confidence 4666666666666655554444433332211 246677889999999999999999999888755321 1111
Q ss_pred HHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHH---------HHHH-HH-HHHHcCCHHHHHHHHHHHHH
Q 002424 667 KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEA---------SLRH-AR-TLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 667 ~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a---------~~~~-a~-ll~~~G~~~eAl~~l~~aL~ 735 (924)
.+ ...+...|++.+|...++++....+. +....... ...+ +. ++...|++++|++.+++++.
T Consensus 94 --~l-a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 166 (327)
T 3cv0_A 94 --AL-AVSHTNEHNANAALASLRAWLLSQPQ----YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE 166 (327)
T ss_dssp --HH-HHHHHHTTCHHHHHHHHHHHHHTSTT----TTTC--------------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred --HH-HHHHHHcCCHHHHHHHHHHHHHhCCc----cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh
Confidence 11 15677899999999999998876432 21111110 0011 33 46788899999999998887
Q ss_pred HHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 002424 736 MCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQA 815 (924)
Q Consensus 736 ~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~a 815 (924)
... ....++..+|.++...|+++.|+..+.+++.+... ...+...+|.++...|+. ++|+..++++
T Consensus 167 ~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~--~~A~~~~~~a 232 (327)
T 3cv0_A 167 MNP------NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD------DAQLWNKLGATLANGNRP--QEALDAYNRA 232 (327)
T ss_dssp HST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHH
T ss_pred hCC------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCH--HHHHHHHHHH
Confidence 532 13678899999999999999999999999877421 246678899999999998 9999999999
Q ss_pred HhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHH------HHHHHHHHHHHHHhcC
Q 002424 816 LPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHEL------AAEAFYLIAIVFDKLG 889 (924)
Q Consensus 816 Lp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~------~~~vl~~lA~l~~~lG 889 (924)
+..... ...++..+|.++.. .|++++|+.++++|+........... ...++..+|.++...|
T Consensus 233 ~~~~~~------~~~~~~~l~~~~~~------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 233 LDINPG------YVRVMYNMAVSYSN------MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHCTT------CHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred HHcCCC------CHHHHHHHHHHHHH------hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 875321 24578899999999 89999999999999998866555444 6789999999999999
Q ss_pred CHHHHHHH
Q 002424 890 RLAEREEA 897 (924)
Q Consensus 890 d~~~r~~a 897 (924)
+.+++...
T Consensus 301 ~~~~A~~~ 308 (327)
T 3cv0_A 301 RPDLVELT 308 (327)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99886654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-10 Score=130.73 Aligned_cols=217 Identities=14% Similarity=0.023 Sum_probs=193.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCC---------cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVD---------MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ 743 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D---------~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~ 743 (924)
......|+|.+|.+.+.+++...+..+... ......++..+|.++...|++++|.+.+.+++......++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 456789999999999999998655433110 11234678899999999999999999999999998888777
Q ss_pred hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhC
Q 002424 744 VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG 823 (924)
Q Consensus 744 ~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~g 823 (924)
.....+...++.++...|+++.|+..+.+++.++...+.....+.+...||.++...|.. .+|..++++++......+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQY--KDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccCh--HHHHHHHHHHHHHHHhcc
Confidence 777888999999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCH-HHHHHHHHHHHHHHHhcCCHHHHHHH
Q 002424 824 GLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDH-ELAAEAFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 824 d~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~-~~~~~vl~~lA~l~~~lGd~~~r~~a 897 (924)
+....+.++..+++++.+ .|++.+|..++++|+.....+.++ ...+.++..++.+|...|+..++-.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~ 238 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHK------LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSY 238 (434)
T ss_dssp CSTHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHH------hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999 999999999999999999999875 56788899999999999999887653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.4e-11 Score=123.89 Aligned_cols=197 Identities=16% Similarity=0.076 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++.++|..+...|+|++|...++++.+.-|..... ...+. ..+...|++++|...+++++.+.+ .
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~lg-----~~~~~~g~~~~A~~~~~~al~~~P-------~- 71 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEA-LYWLA-----RTQLKLGLVNPALENGKTLVARTP-------R- 71 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH-HHHHH-----HHHHHTTCHHHHHHHHHHHHHHCT-------T-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHH-----HHHHHcCCHHHHHHHHHHHHHhCC-------C-
Confidence 567899999999999999999999998776532221 11122 577889999999999999998733 2
Q ss_pred HHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHH
Q 002424 706 KTEASLRHARTLLAA-----------NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~-----------G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL 774 (924)
...+...+|.++... |++++|+..++++++.. .....++..+|.++...|++++|+..+.+|+
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 145 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN------PRYAPLHLQRGLVYALLGERDKAEASLKQAL 145 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 357889999999999 99999999999998852 2235788899999999999999999999999
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 002424 775 SFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAV 854 (924)
Q Consensus 775 ~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~A 854 (924)
.+. .+ ..++..+|.++..+|+. ++|+..+++++..-- ....++..+|.++.. .|++++|
T Consensus 146 ~~~---~~----~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~P------~~~~~~~~la~~~~~------~g~~~~A 204 (217)
T 2pl2_A 146 ALE---DT----PEIRSALAELYLSMGRL--DEALAQYAKALEQAP------KDLDLRVRYASALLL------KGKAEEA 204 (217)
T ss_dssp HHC---CC----HHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHST------TCHHHHHHHHHHHTC-------------
T ss_pred hcc---cc----hHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCC------CChHHHHHHHHHHHH------ccCHHHH
Confidence 986 22 45678899999999998 999999999987521 124678899999999 8999999
Q ss_pred HHHHHHHHH
Q 002424 855 LDPLRQASE 863 (924)
Q Consensus 855 l~~L~~A~~ 863 (924)
+.+++++..
T Consensus 205 ~~~~~~~~~ 213 (217)
T 2pl2_A 205 ARAAALEHH 213 (217)
T ss_dssp ---------
T ss_pred HHHHHHHhh
Confidence 998887653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-10 Score=120.22 Aligned_cols=213 Identities=15% Similarity=-0.026 Sum_probs=169.5
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhh
Q 002424 615 FSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVM 694 (924)
Q Consensus 615 ~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l 694 (924)
+.+..+.+....++..+|..+...|+|++|...++++.+..+.. ...+. .+ ...+...|++++|...+++++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~---~l-a~~~~~~~~~~~A~~~~~~a~~~ 100 (252)
T 2ho1_A 27 LKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS--ADAHA---AL-AVVFQTEMEPKLADEEYRKALAS 100 (252)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC--HHHHH---HH-HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh--HHHHH---HH-HHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455666778999999999999999999999999999875432 11111 11 15778899999999999999886
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHH
Q 002424 695 ASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 695 ~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL 774 (924)
.+ + ...+...++.++...|++++|++.+++++. .+.......++..+|.++...|++++|+..+.+++
T Consensus 101 ~~-----~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 101 DS-----R---NARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp CT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred Cc-----C---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 1 357789999999999999999999998876 23455678899999999999999999999999998
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 002424 775 SFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAV 854 (924)
Q Consensus 775 ~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~A 854 (924)
.+... ...+...+|.++...|+. ++|+..+++++.... ....++..++.++.. .|++++|
T Consensus 169 ~~~~~------~~~~~~~la~~~~~~g~~--~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~------~g~~~~A 228 (252)
T 2ho1_A 169 RLNRN------QPSVALEMADLLYKEREY--VPARQYYDLFAQGGG------QNARSLLLGIRLAKV------FEDRDTA 228 (252)
T ss_dssp HHCSC------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTSC------CCHHHHHHHHHHHHH------TTCHHHH
T ss_pred hcCcc------cHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCc------CcHHHHHHHHHHHHH------ccCHHHH
Confidence 77421 146678899999999998 999999999876321 224567888999998 8999999
Q ss_pred HHHHHHHHHHH
Q 002424 855 LDPLRQASEEL 865 (924)
Q Consensus 855 l~~L~~A~~~f 865 (924)
..+++++.+.+
T Consensus 229 ~~~~~~~~~~~ 239 (252)
T 2ho1_A 229 ASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHC
Confidence 99999998765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.24 E-value=9.2e-10 Score=121.39 Aligned_cols=217 Identities=8% Similarity=-0.025 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH------HH----HhhHHHHHHHcCCHHHHHHHHHHHhhh
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL------LK----LQLLHERSLHRGHLKLAQKVCDELGVM 694 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~------l~----l~l~~~~al~~G~~~~A~~~l~~ll~l 694 (924)
..++.++|.++...|++++|...++++....|......... .. .... ...+..|++.+|...+++++.+
T Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~a~~~ 210 (368)
T 1fch_A 132 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL-GSLLSDSLFLEVKELFLAAVRL 210 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHH-HHHhhcccHHHHHHHHHHHHHh
Confidence 46789999999999999999999999998776443321111 00 0011 2334899999999999999986
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHH
Q 002424 695 ASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 695 ~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL 774 (924)
.+... ...+...+|.++...|++++|++.+++++.... ....++..+|.++...|+++.|+..+.+++
T Consensus 211 ~p~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 278 (368)
T 1fch_A 211 DPTSI------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP------NDYLLWNKLGATLANGNQSEEAVAAYRRAL 278 (368)
T ss_dssp STTSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33211 357888999999999999999999999987522 225688999999999999999999999999
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHH-----HHHHHHHHHhhhcCCCCCCCC
Q 002424 775 SFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELR-----ARAFIAEAKCLLSDPSFSVSQ 849 (924)
Q Consensus 775 ~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~-----A~a~~~LAr~~la~~~~~~~g 849 (924)
.+.. ....++..+|.++..+|+. ++|+..+++++.......+.... +.++..+|.++.. .|
T Consensus 279 ~~~~------~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g 344 (368)
T 1fch_A 279 ELQP------GYIRSRYNLGISCINLGAH--REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM------LG 344 (368)
T ss_dssp HHCT------TCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH------HT
T ss_pred HhCC------CcHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH------hC
Confidence 8742 2246778899999999998 99999999999987776555444 7899999999999 89
Q ss_pred ChHHHHHHHHHHHHHHHhh
Q 002424 850 NPEAVLDPLRQASEELQVL 868 (924)
Q Consensus 850 ~~~~Al~~L~~A~~~f~~l 868 (924)
++++|...++++++.|.+.
T Consensus 345 ~~~~A~~~~~~~l~~~~~~ 363 (368)
T 1fch_A 345 QSDAYGAADARDLSTLLTM 363 (368)
T ss_dssp CGGGHHHHHTTCHHHHHHH
T ss_pred ChHhHHHhHHHHHHHHHHh
Confidence 9999999999999988753
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-09 Score=123.58 Aligned_cols=128 Identities=12% Similarity=-0.013 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH-HHc
Q 002424 722 QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELW-LSF 800 (924)
Q Consensus 722 ~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~-~~l 800 (924)
.+++|+..++.++.. ......++..+|.++...|++++|+..+.+++.+.. .+.....+...+|.+. ...
T Consensus 315 ~~~~A~~~~~~a~~~------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~---~~~~~~~~~~~~~~~~~~~~ 385 (472)
T 4g1t_A 315 LIGHAVAHLKKADEA------NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL---TPVAKQLLHLRYGNFQLYQM 385 (472)
T ss_dssp HHHHHHHHHHHHHHH------CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHhhc------CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHHHC
Confidence 345566665555543 122244677889999999999999999999987531 2233334455566554 356
Q ss_pred CCChHHHHHHHHHHHHhHHH--------------------hhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 002424 801 GPNHAKMASNLIQQALPLIL--------------------GHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 860 (924)
Q Consensus 801 G~~~~~~Al~lLe~aLp~vl--------------------~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~ 860 (924)
|.. ++|+..+++++.+-. .... ..+.++..||.++.. .|++++|++++++
T Consensus 386 ~~~--~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p--~~~~~~~~LG~~~~~------~g~~~~A~~~y~k 455 (472)
T 4g1t_A 386 KCE--DKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNG--ADSEALHVLAFLQEL------NEKMQQADEDSER 455 (472)
T ss_dssp SCH--HHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC---CTTHHHHHHHHHHH------HHHCC--------
T ss_pred CCH--HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH------cCCHHHHHHHHHH
Confidence 776 889998888875311 1111 124678899999998 8999999999999
Q ss_pred HHHHHHhh
Q 002424 861 ASEELQVL 868 (924)
Q Consensus 861 A~~~f~~l 868 (924)
|++.-...
T Consensus 456 ALe~~~~~ 463 (472)
T 4g1t_A 456 GLESGSLI 463 (472)
T ss_dssp --------
T ss_pred HHhcCCCC
Confidence 99865443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-09 Score=123.87 Aligned_cols=240 Identities=12% Similarity=0.008 Sum_probs=146.6
Q ss_pred HHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHH
Q 002424 633 QHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLR 712 (924)
Q Consensus 633 ~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~ 712 (924)
..+...|++++|+..++++.+.-|...... ..+.... .......|++.+|..++++++.+.+ + ...+...
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l~p~~~~~~-~~l~~~~-~~~~~~~~~~~~a~~~~~~al~~~~-----~---~~~~~~~ 252 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRLNPDNQYLK-VLLALKL-HKMREEGEEEGEGEKLVEEALEKAP-----G---VTDVLRS 252 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHHCSSCHHHH-HHHHHHH-HHCC------CHHHHHHHHHHHHCS-----S---CHHHHHH
T ss_pred HHhcCchHHHHHHHHHHHHhhcCCcchHHH-HHHHHHH-HHHHhhhhHHHHHHHHHHHHHHhCc-----c---HHHHHHH
Confidence 334556888999999999888755322211 1111111 1334567899999999999888522 1 4577889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc------------CC-------hhhhHHHHHHH
Q 002424 713 HARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS------------GN-------AVLGIPYALAS 773 (924)
Q Consensus 713 ~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~------------G~-------~~~Al~~l~~A 773 (924)
+|.++...|++++|++.+++++.... ..+.++..+|.+|... +. +..|+..+.++
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 326 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEYIP------NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA 326 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCC------ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999987532 2245566666665432 22 33444444444
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHH
Q 002424 774 LSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEA 853 (924)
Q Consensus 774 L~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~ 853 (924)
+.+-. ..+.+...+|.++..+|+. ++|+..+++++.. ..+......++..+|...... .|+.++
T Consensus 327 ~~~~~------~~~~~~~~lg~~~~~~~~~--~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 390 (472)
T 4g1t_A 327 DEAND------NLFRVCSILASLHALADQY--EEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQ-----MKCEDK 390 (472)
T ss_dssp HHHCT------TTCCCHHHHHHHHHHTTCH--HHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHT-----SSCHHH
T ss_pred hhcCC------chhhhhhhHHHHHHHhccH--HHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHH-----CCCHHH
Confidence 44322 1234456799999999998 9999999999864 234445556677777655432 688999
Q ss_pred HHHHHHHHHHHHHhh------------------cCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 854 VLDPLRQASEELQVL------------------EDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 854 Al~~L~~A~~~f~~l------------------~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
|+.++++|+.+.... .......+++..+|.+|...|+.++|.++-....++
T Consensus 391 Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 391 AIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999998642111 111122467889999999999998877765554444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.4e-09 Score=110.00 Aligned_cols=206 Identities=11% Similarity=-0.019 Sum_probs=171.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-cchhHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN-LQVENASVLL 751 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~g-d~~~~a~al~ 751 (924)
..++..|++.+|...+++++.+. . ...++..+|.++...|++++|++.+++++......+ +......++.
T Consensus 13 ~~~~~~~~~~~A~~~~~~a~~~~---~------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 13 NKFYKARQFDEAIEHYNKAWELH---K------DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS---C------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhh---c------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 67789999999999999999863 2 247889999999999999999999999999876543 3344588999
Q ss_pred HHHHHHHhcCChhhhHHHHHHHHHHH--------------------HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 002424 752 LLAEIHKKSGNAVLGIPYALASLSFC--------------------QLLNLDLLKASATLTLAELWLSFGPNHAKMASNL 811 (924)
Q Consensus 752 ~la~i~~~~G~~~~Al~~l~~AL~la--------------------~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~l 811 (924)
.+|.++...|+++.|+..+.+++.+. +........+.+...+|.++...|+. ++|+..
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~ 161 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW--PNAVKA 161 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH--HHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH--HHHHHH
Confidence 99999999999999999999999842 12224556778889999999999998 999999
Q ss_pred HHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCH
Q 002424 812 IQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRL 891 (924)
Q Consensus 812 Le~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~ 891 (924)
+++++...-. ...++..+|.++.. .|++++|+.++++|++... ....++..+|.++...|+.
T Consensus 162 ~~~a~~~~~~------~~~~~~~l~~~~~~------~~~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~g~~ 223 (258)
T 3uq3_A 162 YTEMIKRAPE------DARGYSNRAAALAK------LMSFPEAIADCNKAIEKDP------NFVRAYIRKATAQIAVKEY 223 (258)
T ss_dssp HHHHHHHCTT------CHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCcc------cHHHHHHHHHHHHH------hCCHHHHHHHHHHHHHhCH------HHHHHHHHHHHHHHHHhhH
Confidence 9999876322 24688999999999 8999999999999988642 2357889999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 002424 892 AEREEAAALFKEYVLA 907 (924)
Q Consensus 892 ~~r~~aa~~f~~l~~~ 907 (924)
+++.++.....++...
T Consensus 224 ~~A~~~~~~a~~~~~~ 239 (258)
T 3uq3_A 224 ASALETLDAARTKDAE 239 (258)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh
Confidence 9988877766666543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.18 E-value=8.9e-10 Score=122.02 Aligned_cols=216 Identities=12% Similarity=0.002 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH---H-HHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL---L-KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~---l-~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
..++.++|..+...|+|++|...++++.+..|......... . ........+...|++++|..++++++.+.+...
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~- 211 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI- 211 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC-
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc-
Confidence 56789999999999999999999999998876543322111 1 111122677889999999999999998633211
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 701 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
...+...+|.++...|++++|++.+++++.... ....++..+|.++...|++++|+..+.+++.+.-.
T Consensus 212 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~- 279 (365)
T 4eqf_A 212 -----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP------EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG- 279 (365)
T ss_dssp -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred -----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Confidence 256788999999999999999999999988532 23668999999999999999999999999987422
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH------HHHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 002424 781 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL------ELRARAFIAEAKCLLSDPSFSVSQNPEAV 854 (924)
Q Consensus 781 g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~------~~~A~a~~~LAr~~la~~~~~~~g~~~~A 854 (924)
.+.++..+|.++..+|+. ++|+.++++++......++. ...+.++..|++++.. .|+.+.+
T Consensus 280 -----~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~a 346 (365)
T 4eqf_A 280 -----FIRSRYNLGISCINLGAY--REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL------MDQPELF 346 (365)
T ss_dssp -----CHHHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH------HTCHHHH
T ss_pred -----chHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHH------cCcHHHH
Confidence 267788999999999999 99999999999988765542 2347788999999988 7888888
Q ss_pred HHHHHHHHHHHH
Q 002424 855 LDPLRQASEELQ 866 (924)
Q Consensus 855 l~~L~~A~~~f~ 866 (924)
....+++++.|+
T Consensus 347 ~~~~~~~l~~~~ 358 (365)
T 4eqf_A 347 QAANLGDLDVLL 358 (365)
T ss_dssp HHHHTTCCGGGT
T ss_pred HHHHHhhHHHHH
Confidence 877777665553
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.9e-09 Score=111.40 Aligned_cols=227 Identities=11% Similarity=0.006 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHH----cCCHHHHHHHHHHHhhhhhccCC
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLH----RGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~----~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
..++..+|..+...|++++|...++.+.+ .++...+ . .++ ..+.. .|++++|..+++++..+ +
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~-~--~lg-~~~~~g~~~~~~~~~A~~~~~~a~~~----~- 72 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGC-F--NLG-VLYYQGQGVEKNLKKAASFYAKACDL----N- 72 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHH-H--HHH-HHHHHTSSSCCCHHHHHHHHHHHHHT----T-
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHH-H--HHH-HHHHcCCCcCCCHHHHHHHHHHHHHC----C-
Confidence 46788999999999999999999999887 1222211 1 111 56677 99999999999999874 2
Q ss_pred CCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh----cCChhhhHHHHHH
Q 002424 701 VDMDLKTEASLRHARTLLA----ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK----SGNAVLGIPYALA 772 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~----~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~----~G~~~~Al~~l~~ 772 (924)
...+.+.+|.++.. .|++++|++.+++++.. ....++..+|.++.. .|++++|+.++.+
T Consensus 73 -----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~ 139 (273)
T 1ouv_A 73 -----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--------KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTK 139 (273)
T ss_dssp -----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--------CCccHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 35788999999999 99999999999998873 246789999999999 9999999999999
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCC
Q 002424 773 SLSFCQLLNLDLLKASATLTLAELWLS----FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVS 848 (924)
Q Consensus 773 AL~la~~~g~~~~~A~al~~La~l~~~----lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~ 848 (924)
|+.+- ...+...||.++.. .|+. ++|+..+++++.. ++ ..++..+|.++.... +..
T Consensus 140 a~~~~--------~~~a~~~lg~~~~~~~~~~~~~--~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~--~~~ 199 (273)
T 1ouv_A 140 ACDLN--------DGDGCTILGSLYDAGRGTPKDL--KKALASYDKACDL----KD----SPGCFNAGNMYHHGE--GAT 199 (273)
T ss_dssp HHHTT--------CHHHHHHHHHHHHHTSSSCCCH--HHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTC--SSC
T ss_pred HHhcC--------cHHHHHHHHHHHHcCCCCCCCH--HHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCC--CCC
Confidence 98742 24677889999988 8887 9999999998754 44 467888999888732 236
Q ss_pred CChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Q 002424 849 QNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDK----LGRLAEREEAAALFKEYV 905 (924)
Q Consensus 849 g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~----lGd~~~r~~aa~~f~~l~ 905 (924)
+++.+|+.++++|.+. +. ..+++.+|.+|.. .|+.+++.++.....+.+
T Consensus 200 ~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACEL----EN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8899999999999874 33 5688999999999 999888777666555554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.5e-09 Score=112.67 Aligned_cols=209 Identities=9% Similarity=-0.051 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++.++|..+...|+|++|...++.+.+ .+......... ...+ +..+...|++++|...+.+++.+.+.
T Consensus 38 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~-~~~l-g~~~~~~~~~~~A~~~~~~a~~~~~~-------- 106 (272)
T 3u4t_A 38 YIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSAD-FEYY-GKILMKKGQDSLAIQQYQAAVDRDTT-------- 106 (272)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHH-HHHH-HHHHHHTTCHHHHHHHHHHHHHHSTT--------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHH-HHHH-HHHHHHcccHHHHHHHHHHHHhcCcc--------
Confidence 3678899999999999999999999987 33211111100 1111 26778999999999999999986331
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
...++..+|.++...|++++|++.+++++.. ......++..+|......+++++|+..+.+++.+....
T Consensus 107 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----- 175 (272)
T 3u4t_A 107 RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP------TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI----- 175 (272)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-----
Confidence 2468999999999999999999999988763 23346788889944444569999999999998875432
Q ss_pred HHHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHhHHHhhCC--HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGP---NHAKMASNLIQQALPLILGHGG--LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 860 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~---~~~~~Al~lLe~aLp~vl~~gd--~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~ 860 (924)
..+...+|.++..+|. . ++|+..+++++......++ ......++..+|.++.. .|++.+|+.++++
T Consensus 176 -~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 176 -YIGYLWRARANAAQDPDTKQ--GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI------NRDKVKADAAWKN 246 (272)
T ss_dssp -HHHHHHHHHHHHHHSTTCSS--CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHcCcchhh--HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH------cCCHHHHHHHHHH
Confidence 4677789999999998 6 8899999999999877666 45567899999999999 8999999999999
Q ss_pred HHHHH
Q 002424 861 ASEEL 865 (924)
Q Consensus 861 A~~~f 865 (924)
|++..
T Consensus 247 al~~~ 251 (272)
T 3u4t_A 247 ILALD 251 (272)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 99865
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=6.1e-10 Score=115.01 Aligned_cols=205 Identities=16% Similarity=0.108 Sum_probs=144.9
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
.+-.+.++..+|..+...|+|++|...++++.+..+.. ...+. .+ ...+...|++.+|...++++..+.+
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~---~l-a~~~~~~~~~~~A~~~~~~~~~~~~---- 88 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED--AIPYI---NF-ANLLSSVNELERALAFYDKALELDS---- 88 (243)
T ss_dssp -----------------------CCTTHHHHHTTCTTC--HHHHH---HH-HHHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc--HHHHH---HH-HHHHHHcCCHHHHHHHHHHHHHcCC----
Confidence 44456778899999999999999999999988765432 11111 11 1577889999999999999988632
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 701 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
+ ...+...++.++...|++++|++.+++++.... ....++..+|.++...|+++.|+..+.+++.+...
T Consensus 89 -~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 157 (243)
T 2q7f_A 89 -S---AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM------ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN- 157 (243)
T ss_dssp -T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC------CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-
T ss_pred -c---chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-
Confidence 1 357788999999999999999999999987532 12557889999999999999999999999877432
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 002424 781 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 860 (924)
Q Consensus 781 g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~ 860 (924)
...+...+|.++...|+. ++|+..+++++.... ....++..+|.++.. .|++.+|+.++++
T Consensus 158 -----~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~------~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 158 -----DTEARFQFGMCLANEGML--DEALSQFAAVTEQDP------GHADAFYNAGVTYAY------KENREKALEMLDK 218 (243)
T ss_dssp -----CHHHHHHHHHHHHHHTCC--HHHHHHHHHHHHHCT------TCHHHHHHHHHHHHH------TTCTTHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCc------ccHHHHHHHHHHHHH------ccCHHHHHHHHHH
Confidence 235678899999999999 999999999876532 124578899999999 8999999999999
Q ss_pred HHHHH
Q 002424 861 ASEEL 865 (924)
Q Consensus 861 A~~~f 865 (924)
+++..
T Consensus 219 ~~~~~ 223 (243)
T 2q7f_A 219 AIDIQ 223 (243)
T ss_dssp HHHHC
T ss_pred HHccC
Confidence 98754
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.3e-10 Score=115.72 Aligned_cols=184 Identities=17% Similarity=0.069 Sum_probs=147.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++.+|...+++++.+ ||. ...++..+|.++...|++++|+..+++++... .....++..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~-------~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~ 78 (217)
T 2pl2_A 13 VQLYALGRYDAALTLFERALKE-------NPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART------PRYLGGYMV 78 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-------SSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHH
Confidence 5778999999999999999885 222 46789999999999999999999999998852 223668889
Q ss_pred HHHHHHhc-----------CChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 753 LAEIHKKS-----------GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 753 la~i~~~~-----------G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
+|.++... |++++|+..+.+++.+.- ..+.++..+|.++..+|+. ++|+..+++++..-
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P------~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~-- 148 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP------RYAPLHLQRGLVYALLGER--DKAEASLKQALALE-- 148 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC--
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcc--
Confidence 99999999 999999999999998742 2346778899999999998 99999999998874
Q ss_pred hCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 002424 822 HGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 822 ~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~a 897 (924)
.+ ..+++.+|.++.. .|++++|+..+++|++..- ....++..+|.++...|+.+++.++
T Consensus 149 -~~----~~~~~~la~~~~~------~g~~~~A~~~~~~al~~~P------~~~~~~~~la~~~~~~g~~~~A~~~ 207 (217)
T 2pl2_A 149 -DT----PEIRSALAELYLS------MGRLDEALAQYAKALEQAP------KDLDLRVRYASALLLKGKAEEAARA 207 (217)
T ss_dssp -CC----HHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHTC----------
T ss_pred -cc----hHHHHHHHHHHHH------cCCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHccCHHHHHHH
Confidence 33 5578899999999 8999999999999998632 2346888999999999999886543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.5e-09 Score=106.67 Aligned_cols=206 Identities=15% Similarity=-0.030 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
....++..+|..+...|++++|...++.+.+..+... ..+. .+ ...+...|++++|...+++++.+.+ +
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~---~l-~~~~~~~~~~~~A~~~~~~a~~~~~-----~ 74 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE--LAWL---VR-AEIYQYLKVNDKAQESFRQALSIKP-----D 74 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH---HH-HHHHHHTTCHHHHHHHHHHHHHHCT-----T
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch--HHHH---HH-HHHHHHcCChHHHHHHHHHHHHhCC-----C
Confidence 4567889999999999999999999999998766321 1111 11 1567889999999999999988632 1
Q ss_pred cchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 703 MDLKTEASLRHARTLLAA-NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~-G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
...+...++.++... |++++|++.+++++. .+.......++..+|.++...|+++.|+..+.+++.....
T Consensus 75 ---~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-- 145 (225)
T 2vq2_A 75 ---SAEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-- 145 (225)
T ss_dssp ---CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--
T ss_pred ---ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Confidence 356788999999999 999999999999876 2344556788999999999999999999999999876432
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
...+...+|.++...|+. ++|+.++++++...-. .+ ..++..++.++.. .|+.+.|..+++.+
T Consensus 146 ----~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~------~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 146 ----FPPAFKELARTKMLAGQL--GDADYYFKKYQSRVEV-LQ----ADDLLLGWKIAKA------LGNAQAAYEYEAQL 208 (225)
T ss_dssp ----CHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHCS-CC----HHHHHHHHHHHHH------TTCHHHHHHHHHHH
T ss_pred ----CchHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCC-CC----HHHHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 145678899999999998 9999999999875320 22 2345677777777 78899999888887
Q ss_pred HHHH
Q 002424 862 SEEL 865 (924)
Q Consensus 862 ~~~f 865 (924)
...+
T Consensus 209 ~~~~ 212 (225)
T 2vq2_A 209 QANF 212 (225)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 6543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3.1e-09 Score=114.55 Aligned_cols=244 Identities=9% Similarity=-0.037 Sum_probs=180.6
Q ss_pred HHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHH--
Q 002424 590 LRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLK-- 667 (924)
Q Consensus 590 l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~-- 667 (924)
..+.++...|...-+.-.....+....+ ...++..+|..+...|++++|...++.+.+..+...........
T Consensus 60 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (327)
T 3cv0_A 60 SLGLTQAENEKDGLAIIALNHARMLDPK------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD 133 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH
Confidence 3445555566555444433322332211 14678899999999999999999999999876654432211100
Q ss_pred ------HhhHHH-HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 002424 668 ------LQLLHE-RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF 740 (924)
Q Consensus 668 ------l~l~~~-~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~ 740 (924)
..+... .+...|++.+|...+++++...+ + ...+...+|.++...|++++|++.+++++....
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-- 203 (327)
T 3cv0_A 134 VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-----N---DAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-- 203 (327)
T ss_dssp ------------CCTTSHHHHHHHHHHHHHHHHHST-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-----C---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--
Confidence 000001 35678999999999999988632 1 357889999999999999999999999987522
Q ss_pred ccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 741 NLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 741 gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
....++..+|.++...|+++.|+..+.+++.+... ...+...+|.++..+|+. ++|+..+++++....
T Consensus 204 ----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 204 ----DDAQLWNKLGATLANGNRPQEALDAYNRALDINPG------YVRVMYNMAVSYSNMSQY--DLAAKQLVRAIYMQV 271 (327)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHT
T ss_pred ----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhccH--HHHHHHHHHHHHhCC
Confidence 23568899999999999999999999999887421 245678899999999998 999999999998876
Q ss_pred hhCCHHH------HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 002424 821 GHGGLEL------RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 867 (924)
Q Consensus 821 ~~gd~~~------~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~ 867 (924)
...+... ...++..+|.++.. .|++++|...++++++.+..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 272 GGTTPTGEASREATRSMWDFFRMLLNV------MNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp TSCC-----CCTHHHHHHHHHHHHHHH------TTCHHHHHHHTTCCSHHHHH
T ss_pred ccccccccchhhcCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHhcch
Confidence 5444333 67889999999999 89999999999999888764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.07 E-value=6e-07 Score=104.28 Aligned_cols=229 Identities=14% Similarity=0.042 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHH----cCCHHHHHHHHHHHhhhhh
Q 002424 625 ALAHVKLIQHLAV----FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLH----RGHLKLAQKVCDELGVMAS 696 (924)
Q Consensus 625 ~~a~~~La~~~a~----~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~----~G~~~~A~~~l~~ll~l~~ 696 (924)
..+..+||..+.. .+++++|...++.+.+. ++.. .... +. ..+.. .+++.+|..+++++...
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~-a~~~--lg-~~y~~g~g~~~~~~~A~~~~~~a~~~-- 252 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----GDEL-GQLH--LA-DMYYFGIGVTQDYTQSRVLFSQSAEQ-- 252 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHH-HHHH--HH-HHHHHTSSSCCCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----CCHH-HHHH--HH-HHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 4678899999988 89999999999988753 2221 1111 11 34444 78999999999998763
Q ss_pred ccCCCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc-----CChhhhH
Q 002424 697 SVTGVDMDLKTEASLRHARTLLA----ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS-----GNAVLGI 767 (924)
Q Consensus 697 ~~~~~D~~~~a~a~~~~a~ll~~----~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~-----G~~~~Al 767 (924)
+ ...+.+.++.++.. .+++++|+++++++++. +...++..+|.++... +++++|+
T Consensus 253 --~------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 253 --G------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--------GNSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp --T------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--------TCHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred --C------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 2 34678889999988 89999999999988652 2356888899999887 8999999
Q ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCC
Q 002424 768 PYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN-HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFS 846 (924)
Q Consensus 768 ~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~-~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~ 846 (924)
.++.+|++. ++ ..+...||.++...|.. .+++|+.++++++.. |+ ..+++.||.++.... +
T Consensus 317 ~~~~~a~~~----~~----~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~--g 378 (490)
T 2xm6_A 317 SWYTKSAEQ----GD----ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GE----KAAQFNLGNALLQGK--G 378 (490)
T ss_dssp HHHHHHHHT----TC----HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTS--S
T ss_pred HHHHHHHhc----CC----HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCC--C
Confidence 999888764 33 35778899998877622 348999999998754 44 568889999988732 2
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Q 002424 847 VSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDK----LGRLAEREEAAALFKEYV 905 (924)
Q Consensus 847 ~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~----lGd~~~r~~aa~~f~~l~ 905 (924)
..+++.+|+.++++|.+. + ...+++.+|.+|.. .+|.+++.++-......+
T Consensus 379 ~~~~~~~A~~~~~~A~~~----~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 379 VKKDEQQAAIWMRKAAEQ----G----LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 357899999999999762 3 25688999999998 788888777666655555
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-09 Score=130.85 Aligned_cols=171 Identities=18% Similarity=0.046 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
+.+.++.+||.++..+|+|++|.+.+++|.+..|..... .. ++ +..+...|++++|...+++++.+.+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a---~~--nL-g~~l~~~g~~~eA~~~~~~Al~l~P------ 74 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA---HS--NL-ASVLQQQGKLQEALMHYKEAIRISP------ 74 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH---HH--HH-HHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HH--HH-HHHHHHcCCHHHHHHHHHHHHHhCC------
Confidence 457889999999999999999999999999987643221 11 12 2677899999999999999999733
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~ 782 (924)
. .+.+++++|.++..+|++++|++.+++++++. ...+.++..+|.++...|++++|+..+.+|+++.-
T Consensus 75 -~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P---- 142 (723)
T 4gyw_A 75 -T-FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN------PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP---- 142 (723)
T ss_dssp -T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----
T ss_pred -C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----
Confidence 2 46889999999999999999999999999852 23377899999999999999999999999998742
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 783 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
..+.++.+||.++..+|+. ++|.+.+++++.+...
T Consensus 143 --~~~~a~~~L~~~l~~~g~~--~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 143 --DFPDAYCNLAHCLQIVCDW--TDYDERMKKLVSIVAD 177 (723)
T ss_dssp --CCHHHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHHH
T ss_pred --CChHHHhhhhhHHHhcccH--HHHHHHHHHHHHhChh
Confidence 2356788999999999999 9999999998887644
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-09 Score=104.23 Aligned_cols=167 Identities=14% Similarity=0.032 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+.++.+||..+..+|+|++|+..++++.+.-|.... .+ .. ++ ..+...|++++|...+.++....+ +
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~-~~--la-~~~~~~~~~~~a~~~~~~~~~~~~-----~- 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVE--TL-LK--LG-KTYMDIGLPNDAIESLKKFVVLDT-----T- 71 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH--HH-HH--HH-HHHHHTTCHHHHHHHHHHHHHHCC-----C-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HH-HH--HH-HHHHHCCCHHHHHHHHHHHHhcCc-----h-
Confidence 3578999999999999999999999999988664222 11 11 11 677899999999999999988522 1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
...+....+.++...++++.|.+.+.+++.... ....++..+|.++...|++++|+..+.+++.+.-
T Consensus 72 --~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p----- 138 (184)
T 3vtx_A 72 --SAEAYYILGSANFMIDEKQAAIDALQRAIALNT------VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP----- 138 (184)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-----
Confidence 457788999999999999999999999887422 2356788999999999999999999999998742
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 784 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 784 ~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
..+.+...+|.++..+|+. ++|+..+++++..
T Consensus 139 -~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~ 170 (184)
T 3vtx_A 139 -GFIRAYQSIGLAYEGKGLR--DEAVKYFKKALEK 170 (184)
T ss_dssp -TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHT
T ss_pred -hhhhHHHHHHHHHHHCCCH--HHHHHHHHHHHhC
Confidence 2356788999999999998 9999999999864
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.02 E-value=7.8e-09 Score=117.02 Aligned_cols=237 Identities=9% Similarity=-0.083 Sum_probs=178.0
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCC-HHHHHHHHHHHhhhhhccC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGH-LKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~-~~~A~~~l~~ll~l~~~~~ 699 (924)
..+...++.++|.++...|+|++|+..++++.++-|... ..|... +..+...|+ +.+|...+++++.+.+
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~--~a~~~~----g~~l~~~g~d~~eAl~~~~~al~l~P--- 163 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY--TVWHFR----RVLLKSLQKDLHEEMNYITAIIEEQP--- 163 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH--HHHHHH----HHHHHHTTCCHHHHHHHHHHHHHHCT---
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH--HHHHHH----HHHHHHcccCHHHHHHHHHHHHHHCC---
Confidence 345678899999999999999999999999998866322 223211 156678897 9999999999999733
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
. ...+++++|.++...|++++|+..+++++.+- .....++..+|.++...|+++.|+..+.+++.+.-.
T Consensus 164 ----~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~ 232 (382)
T 2h6f_A 164 ----K-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232 (382)
T ss_dssp ----T-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred ----C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 2 46889999999999999999999999999842 234678999999999999999999999999987422
Q ss_pred hCCcHHHHHHHHHHHHHHHH-cCCChHHHH-----HHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCC--Ch
Q 002424 780 LNLDLLKASATLTLAELWLS-FGPNHAKMA-----SNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQ--NP 851 (924)
Q Consensus 780 ~g~~~~~A~al~~La~l~~~-lG~~~~~~A-----l~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g--~~ 851 (924)
-..++..+|.++.. .|.. ++| +..+++++.+--. -..+++.+|.++.. .| ++
T Consensus 233 ------~~~a~~~lg~~l~~l~~~~--~eA~~~~el~~~~~Al~l~P~------~~~a~~~l~~ll~~------~g~~~~ 292 (382)
T 2h6f_A 233 ------NNSVWNQRYFVISNTTGYN--DRAVLEREVQYTLEMIKLVPH------NESAWNYLKGILQD------RGLSKY 292 (382)
T ss_dssp ------CHHHHHHHHHHHHHTTCSC--SHHHHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHTT------TCGGGC
T ss_pred ------CHHHHHHHHHHHHHhcCcc--hHHHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHc------cCccch
Confidence 24677889999998 6665 566 4777777764321 23578888888877 55 57
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCH-----HH-HHHHHHHHHHH
Q 002424 852 EAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRL-----AE-REEAAALFKEY 904 (924)
Q Consensus 852 ~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~-----~~-r~~aa~~f~~l 904 (924)
.+|++.++++ .....-..++..+|.+|...|+. .. .++|...|+++
T Consensus 293 ~~a~~~~~~~-------~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 293 PNLLNQLLDL-------QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHH-------TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-------ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 7887777654 11122346777888888887622 22 25677777766
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.01 E-value=8.8e-09 Score=107.29 Aligned_cols=194 Identities=12% Similarity=-0.018 Sum_probs=158.7
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..+...|++.+|...+++++.+.+ + ...+...++.++...|++++|++.+++++.... ....++..
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~~-----~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~ 110 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEIDP-----S---SADAHAALAVVFQTEMEPKLADEEYRKALASDS------RNARVLNN 110 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC-----C---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc------CcHHHHHH
Confidence 677899999999999999988622 1 357889999999999999999999999987522 23678899
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|.++...|++++|+..+.+++. .+.......+...+|.++...|+. ++|+.++++++.... . ...++
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~~~~~~--~----~~~~~ 178 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKP--AQAKEYFEKSLRLNR--N----QPSVA 178 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCS--C----CHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCc--c----cHHHH
Confidence 99999999999999999999887 333445567888899999999998 999999999986532 1 25678
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
..+|.++.. .|++++|+.+++++++... ....++..++.++...|+.+++.++.....+.
T Consensus 179 ~~la~~~~~------~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 179 LEMADLLYK------EREYVPARQYYDLFAQGGG------QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHH------TTCHHHHHHHHHHHHTTSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------cCCHHHHHHHHHHHHHhCc------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 899999999 8999999999999876432 22457889999999999999877766655443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.1e-06 Score=98.21 Aligned_cols=213 Identities=11% Similarity=-0.006 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHH----cCCHHHHHHHHHHHhhhhh
Q 002424 625 ALAHVKLIQHLAV----FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLH----RGHLKLAQKVCDELGVMAS 696 (924)
Q Consensus 625 ~~a~~~La~~~a~----~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~----~G~~~~A~~~l~~ll~l~~ 696 (924)
..+..+||..+.. .+++++|...++.+.+. ++... ...+. ..+.. .+++.+|..+++++...
T Consensus 219 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a-~~~lg---~~y~~g~~~~~d~~~A~~~~~~a~~~-- 288 (490)
T 2xm6_A 219 ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----GNSIA-QFRLG---YILEQGLAGAKEPLKALEWYRKSAEQ-- 288 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----TCHHH-HHHHH---HHHHHTTTSSCCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHH-HHHHH---HHHHCCCCCCCCHHHHHHHHHHHHHc--
Confidence 3578889999886 89999999999987753 22221 11111 34445 89999999999998762
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcC---ChhhhHH
Q 002424 697 SVTGVDMDLKTEASLRHARTLLAA-----NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG---NAVLGIP 768 (924)
Q Consensus 697 ~~~~~D~~~~a~a~~~~a~ll~~~-----G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G---~~~~Al~ 768 (924)
+ ...+.+.++.++... +++++|+.+++++++. + ...++..+|.++...| ++.+|+.
T Consensus 289 --~------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~y~~~g~~~~~~~A~~ 352 (490)
T 2xm6_A 289 --G------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----G----DATAQANLGAIYFRLGSEEEHKKAVE 352 (490)
T ss_dssp --T------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred --C------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----C----CHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 2 346888999999888 9999999999998763 2 3568899999998877 7789999
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCC
Q 002424 769 YALASLSFCQLLNLDLLKASATLTLAELWLS----FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPS 844 (924)
Q Consensus 769 ~l~~AL~la~~~g~~~~~A~al~~La~l~~~----lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~ 844 (924)
++.+|++. ++ ..+...||.++.. .++. ++|+..+++++. .|+ ..++..||.++....
T Consensus 353 ~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~--~~A~~~~~~A~~----~~~----~~a~~~Lg~~y~~g~- 413 (490)
T 2xm6_A 353 WFRKAAAK----GE----KAAQFNLGNALLQGKGVKKDE--QQAAIWMRKAAE----QGL----SAAQVQLGEIYYYGL- 413 (490)
T ss_dssp HHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCH--HHHHHHHHHHHH----TTC----HHHHHHHHHHHHHTS-
T ss_pred HHHHHHHC----CC----HHHHHHHHHHHHcCCCCCCCH--HHHHHHHHHHHh----CCC----HHHHHHHHHHHHcCC-
Confidence 99988764 33 5788899999987 6666 999999999875 344 568889999998732
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 002424 845 FSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFD 886 (924)
Q Consensus 845 ~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~ 886 (924)
+..+++.+|+.++++|.+.-. .+..-..+...++.++.
T Consensus 414 -g~~~d~~~A~~~~~~A~~~~~---~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 414 -GVERDYVQAWAWFDTASTNDM---NLFGTENRNITEKKLTA 451 (490)
T ss_dssp -SSCCCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHTTSCH
T ss_pred -CCCCCHHHHHHHHHHHHHCCC---CCcCCHHHHHHHHhcCH
Confidence 236899999999999988641 12234445556665544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.4e-08 Score=100.10 Aligned_cols=194 Identities=12% Similarity=-0.009 Sum_probs=155.7
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++++|...+++++.+.+ + ...+...++.++...|++++|++.+++++.... ....++..
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~ 81 (225)
T 2vq2_A 16 MEYMRGQDYRQATASIEDALKSDP-----K---NELAWLVRAEIYQYLKVNDKAQESFRQALSIKP------DSAEINNN 81 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCc-----c---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CChHHHHH
Confidence 677899999999999999988632 1 256888999999999999999999999987522 23567889
Q ss_pred HHHHHHhc-CChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHH
Q 002424 753 LAEIHKKS-GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARA 831 (924)
Q Consensus 753 la~i~~~~-G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a 831 (924)
+|.++... |+++.|+..+.+++. .........+...+|.++...|+. ++|+..+++++...-. ...+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~------~~~~ 149 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQF--GLAEAYLKRSLAAQPQ------FPPA 149 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHSTT------CHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCC------CchH
Confidence 99999999 999999999999887 233334456778899999999998 9999999999875321 2567
Q ss_pred HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002424 832 FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKE 903 (924)
Q Consensus 832 ~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~ 903 (924)
+..+|.++.. .|++.+|+.++++++.... .....++..++.++...|+.+.+..+.....+
T Consensus 150 ~~~la~~~~~------~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 150 FKELARTKML------AGQLGDADYYFKKYQSRVE-----VLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHH------HTCHHHHHHHHHHHHHHHC-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------cCCHHHHHHHHHHHHHhCC-----CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8899999999 8999999999999988642 01233567888999999999887665555443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.95 E-value=6.9e-08 Score=104.79 Aligned_cols=222 Identities=16% Similarity=0.103 Sum_probs=162.8
Q ss_pred ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccC
Q 002424 620 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 620 ~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~ 699 (924)
+++....+..-++.++..+|+|++|+..++. ........+. .....+...|++++|...+++++.. ..
T Consensus 29 ~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-------~~~~~~~a~~--~la~~~~~~~~~~~A~~~l~~ll~~--~~- 96 (291)
T 3mkr_A 29 SPERDVERDVFLYRAYLAQRKYGVVLDEIKP-------SSAPELQAVR--MFAEYLASHSRRDAIVAELDREMSR--SV- 96 (291)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-------TSCHHHHHHH--HHHHHHHCSTTHHHHHHHHHHHHHS--CC-
T ss_pred CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-------cCChhHHHHH--HHHHHHcCCCcHHHHHHHHHHHHhc--cc-
Confidence 4455455667788999999999999886653 1222222222 1115666889999999999998762 11
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
+|. ...+.+.+|.++...|++++|++.+++ .....++..+|.++.+.|+++.|+..+.+++.+.-
T Consensus 97 --~P~-~~~~~~~la~~~~~~g~~~~Al~~l~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p- 161 (291)
T 3mkr_A 97 --DVT-NTTFLLMAASIYFYDQNPDAALRTLHQ-----------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDE- 161 (291)
T ss_dssp --CCS-CHHHHHHHHHHHHHTTCHHHHHHHHTT-----------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred --CCC-CHHHHHHHHHHHHHCCCHHHHHHHHhC-----------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-
Confidence 222 357789999999999999999999886 23356888999999999999999999999987741
Q ss_pred hCCcHHHHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 002424 780 LNLDLLKASATLTLAELWLS--FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDP 857 (924)
Q Consensus 780 ~g~~~~~A~al~~La~l~~~--lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~ 857 (924)
+. ....++..|.. .|...+++|+.++++++.. .++ .+.+++.+|.++.. .|++++|...
T Consensus 162 --~~-----~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~---~~~~~~~la~~~~~------~g~~~eA~~~ 222 (291)
T 3mkr_A 162 --DA-----TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSP---TLLLLNGQAACHMA------QGRWEAAEGV 222 (291)
T ss_dssp --TC-----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCC---CHHHHHHHHHHHHH------TTCHHHHHHH
T ss_pred --Cc-----HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCC---cHHHHHHHHHHHHH------cCCHHHHHHH
Confidence 11 12233333322 2333449999999999876 333 46689999999999 9999999999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHH
Q 002424 858 LRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAE 893 (924)
Q Consensus 858 L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~ 893 (924)
+++|++.. ..-.+++..++.++...|+..+
T Consensus 223 l~~al~~~------p~~~~~l~~l~~~~~~~g~~~e 252 (291)
T 3mkr_A 223 LQEALDKD------SGHPETLINLVVLSQHLGKPPE 252 (291)
T ss_dssp HHHHHHHC------TTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhC------CCCHHHHHHHHHHHHHcCCCHH
Confidence 99999864 2345678899999999999765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-07 Score=100.57 Aligned_cols=193 Identities=10% Similarity=-0.002 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHH----ccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHH----cCCHHHHHHHHHHHhhhhhc
Q 002424 626 LAHVKLIQHLAV----FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLH----RGHLKLAQKVCDELGVMASS 697 (924)
Q Consensus 626 ~a~~~La~~~a~----~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~----~G~~~~A~~~l~~ll~l~~~ 697 (924)
.++.++|..+.. .|++++|...++++.+. ++...+. .++ ..+.. .|++.+|..+++++...
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~---~lg-~~~~~g~~~~~~~~~A~~~~~~a~~~--- 107 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NYSNGCH---LLG-NLYYSGQGVSQNTNKALQYYSKACDL--- 107 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHH---HHH-HHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CCHHHHH---HHH-HHHhCCCCcccCHHHHHHHHHHHHHc---
Confidence 678999999999 99999999999998865 2222111 111 56677 99999999999999874
Q ss_pred cCCCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh----cCChhhhHHH
Q 002424 698 VTGVDMDLKTEASLRHARTLLA----ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK----SGNAVLGIPY 769 (924)
Q Consensus 698 ~~~~D~~~~a~a~~~~a~ll~~----~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~----~G~~~~Al~~ 769 (924)
+ ...+...+|.++.. .|++++|++.+++++.. + ...++..+|.++.. .|++++|+.+
T Consensus 108 -~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~ 172 (273)
T 1ouv_A 108 -K------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----N----DGDGCTILGSLYDAGRGTPKDLKKALAS 172 (273)
T ss_dssp -T------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred -C------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc----C----cHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 2 35789999999999 99999999999999873 2 35678899999998 9999999999
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCC
Q 002424 770 ALASLSFCQLLNLDLLKASATLTLAELWLS----FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSF 845 (924)
Q Consensus 770 l~~AL~la~~~g~~~~~A~al~~La~l~~~----lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~ 845 (924)
+.+|+.. +. ..+...||.++.. .|+. ++|+..+++++.. ++ ..++..||.++... .
T Consensus 173 ~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~~--~~A~~~~~~a~~~----~~----~~a~~~l~~~~~~g--~ 232 (273)
T 1ouv_A 173 YDKACDL----KD----SPGCFNAGNMYHHGEGATKNF--KEALARYSKACEL----EN----GGGCFNLGAMQYNG--E 232 (273)
T ss_dssp HHHHHHT----TC----HHHHHHHHHHHHHTCSSCCCH--HHHHHHHHHHHHT----TC----HHHHHHHHHHHHTT--S
T ss_pred HHHHHHC----CC----HHHHHHHHHHHHcCCCCCccH--HHHHHHHHHHHhC----CC----HHHHHHHHHHHHcC--C
Confidence 9999865 22 4677889999999 8887 9999999998754 44 56888999999863 2
Q ss_pred CCCCChHHHHHHHHHHHHH
Q 002424 846 SVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 846 ~~~g~~~~Al~~L~~A~~~ 864 (924)
+..+++++|+.++++|.+.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHc
Confidence 2368899999999999764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.4e-09 Score=123.37 Aligned_cols=187 Identities=14% Similarity=-0.054 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCC
Q 002424 623 DAALAHVKLIQHLAVFKGY-KEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y-~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
..+.++..+|..+...|+| ++|...++++.+..|.... .|. .+ +..++..|++++|..++++++.+
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~--a~~---~l-g~~~~~~g~~~~A~~~~~~al~~------- 166 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE--AWN---QL-GEVYWKKGDVTSAHTCFSGALTH------- 166 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHH--HHH---HH-HHHHHHHTCHHHHHHHHHHHHTT-------
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHH--HHH---HH-HHHHHHcCCHHHHHHHHHHHHhh-------
Confidence 3467889999999999999 9999999999988664222 111 11 16778899999999999999986
Q ss_pred CcchHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc--------CChh
Q 002424 702 DMDLKTEASLRHARTLLAA---------NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS--------GNAV 764 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~---------G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~--------G~~~ 764 (924)
+|. ..++..+|.++... |++++|++.+++++.... ....++..+|.++... |+++
T Consensus 167 ~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 167 CKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV------LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp CCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 444 48899999999999 999999999999998532 2366889999999999 9999
Q ss_pred hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhc
Q 002424 765 LGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 841 (924)
Q Consensus 765 ~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la 841 (924)
+|+..+.+|+.+.-. ....+.++..+|.++..+|+. ++|+..+++++..--. + ..++..++.++..
T Consensus 239 ~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~l~p~--~----~~a~~~l~~~~~~ 304 (474)
T 4abn_A 239 QALSAYAQAEKVDRK---ASSNPDLHLNRATLHKYEESY--GEALEGFSQAAALDPA--W----PEPQQREQQLLEF 304 (474)
T ss_dssp HHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHH
Confidence 999999999988321 114467888999999999998 9999999999876322 2 3566777777776
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.91 E-value=9.2e-09 Score=119.71 Aligned_cols=215 Identities=12% Similarity=0.021 Sum_probs=165.8
Q ss_pred ccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCH-HHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHH
Q 002424 638 FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHL-KLAQKVCDELGVMASSVTGVDMDLKTEASLRHART 716 (924)
Q Consensus 638 ~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~-~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~l 716 (924)
..++++|+..++.+....+ .....+.. + +..+...|++ ++|..++++++.+.+ . ...+++.+|.+
T Consensus 81 ~~~~~~al~~l~~~~~~~~--~~a~~~~~---l-g~~~~~~g~~~~~A~~~~~~al~~~p-------~-~~~a~~~lg~~ 146 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQ--VEAQALML---K-GKALNVTPDYSPEAEVLLSKAVKLEP-------E-LVEAWNQLGEV 146 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCC--CCHHHHHH---H-HHHHTSSSSCCHHHHHHHHHHHHHCT-------T-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCc--hhHHHHHH---H-HHHHHhccccHHHHHHHHHHHHhhCC-------C-CHHHHHHHHHH
Confidence 3446677776665443222 11122211 1 1577789999 999999999998632 2 36789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc---------CChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 717 LLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS---------GNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 717 l~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~---------G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
+...|++++|++.+++++.. ++. ..++..+|.++... |++++|+..+.+|+.+.-. .+
T Consensus 147 ~~~~g~~~~A~~~~~~al~~-----~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~ 213 (474)
T 4abn_A 147 YWKKGDVTSAHTCFSGALTH-----CKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL------DG 213 (474)
T ss_dssp HHHHTCHHHHHHHHHHHHTT-----CCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT------CH
T ss_pred HHHcCCHHHHHHHHHHHHhh-----CCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC------CH
Confidence 99999999999999999874 333 48999999999999 9999999999999987532 24
Q ss_pred HHHHHHHHHHHHc--------CCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 002424 788 SATLTLAELWLSF--------GPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR 859 (924)
Q Consensus 788 ~al~~La~l~~~l--------G~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~ 859 (924)
.++..||.++..+ |+. ++|+..+++++..-- .....+.+++.+|.++.. .|++++|+.+++
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~--~~A~~~~~~al~~~p---~~~~~~~~~~~lg~~~~~------~g~~~~A~~~~~ 282 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKIS--QQALSAYAQAEKVDR---KASSNPDLHLNRATLHKY------EESYGEALEGFS 282 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHH--HHHHHHHHHHHHHCG---GGGGCHHHHHHHHHHHHH------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccchH--HHHHHHHHHHHHhCC---CcccCHHHHHHHHHHHHH------cCCHHHHHHHHH
Confidence 6778899999888 776 999999999987621 011456789999999999 899999999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 860 QASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 860 ~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
+|++..-. -..++..++.++..+|+.+++-+
T Consensus 283 ~al~l~p~------~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 283 QAAALDPA------WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHCTT------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987532 24678888999999888777554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-08 Score=104.82 Aligned_cols=192 Identities=14% Similarity=0.057 Sum_probs=148.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++++|...+++++...+ . ...+...++.++...|++++|++.+++++.... ....++..
T Consensus 31 ~~~~~~~~~~~A~~~~~~~l~~~~-------~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~ 96 (243)
T 2q7f_A 31 GRGSEFGDYEKAAEAFTKAIEENK-------E-DAIPYINFANLLSSVNELERALAFYDKALELDS------SAATAYYG 96 (243)
T ss_dssp -----------CCTTHHHHHTTCT-------T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHhCc-------c-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------cchHHHHH
Confidence 577889999999999999987422 1 367889999999999999999999999987522 23678899
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|.++...|+++.|+..+.+++.+.... ..+...+|.++...|+. ++|+.++++++..... ...++
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~--~~A~~~~~~~~~~~~~------~~~~~ 162 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAGMEN------GDLFYMLGTVLVKLEQP--KLALPYLQRAVELNEN------DTEAR 162 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCS------HHHHHHHHHHHHHTSCH--HHHHHHHHHHHHHCTT------CHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccH--HHHHHHHHHHHHhCCc------cHHHH
Confidence 9999999999999999999998875321 35678899999999998 9999999999865321 24578
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
..+|.++.. .|++++|+.++++++.... ....++..+|.++...|+.+++.++.....++
T Consensus 163 ~~l~~~~~~------~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 163 FQFGMCLAN------EGMLDEALSQFAAVTEQDP------GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHH------HTCCHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHH------cCCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 899999999 8999999999999987642 22458899999999999999987766655543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=5.2e-08 Score=102.37 Aligned_cols=206 Identities=10% Similarity=-0.056 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
......++..+|..+...|+|++|...++++.+..|... ..+. .+ +..+...|++++|..++++++.+.+.
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~---~l-a~~~~~~~~~~~A~~~~~~al~~~~~--- 109 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP--EVFN---YL-GIYLTQAGNFDAAYEAFDSVLELDPT--- 109 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHH---HH-HHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH--HHHH---HH-HHHHHHccCHHHHHHHHHHHHhcCcc---
Confidence 456778888888888888888888888888887765321 1111 11 15667888888888888888876321
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 701 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
...++..+|.++...|++++|++.+++++.... ....... ..+ +....|+++.|+..+.+++......
T Consensus 110 -----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----~~~~~~~--~~~-~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (275)
T 1xnf_A 110 -----YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP----NDPFRSL--WLY-LAEQKLDEKQAKEVLKQHFEKSDKE 177 (275)
T ss_dssp -----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHH--HHH-HHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred -----ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----CChHHHH--HHH-HHHHhcCHHHHHHHHHHHHhcCCcc
Confidence 246778888888888888888888888877422 1111222 222 2355688888888887777654221
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 002424 781 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 860 (924)
Q Consensus 781 g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~ 860 (924)
.. ...++.++...+.. ++|+..+++++...... ....+.++..+|.++.. .|++++|+.++++
T Consensus 178 ~~-------~~~~~~~~~~~~~~--~~a~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 178 QW-------GWNIVEFYLGNISE--QTLMERLKADATDNTSL--AEHLSETNFYLGKYYLS------LGDLDSATALFKL 240 (275)
T ss_dssp ST-------HHHHHHHHTTSSCH--HHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHH------TTCHHHHHHHHHH
T ss_pred hH-------HHHHHHHHHHhcCH--HHHHHHHHHHhcccccc--cccccHHHHHHHHHHHH------cCCHHHHHHHHHH
Confidence 11 12355555445554 78888888877654432 12336778888888888 7888888888888
Q ss_pred HHHH
Q 002424 861 ASEE 864 (924)
Q Consensus 861 A~~~ 864 (924)
|+..
T Consensus 241 al~~ 244 (275)
T 1xnf_A 241 AVAN 244 (275)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 8765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.89 E-value=4.5e-08 Score=97.21 Aligned_cols=159 Identities=12% Similarity=0.120 Sum_probs=133.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..+..+|+|++|...+++++.+. |. ...++..+|.++...|++++|+..+..++... .....+...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~-------p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~ 78 (184)
T 3vtx_A 13 DKKRTKGDFDGAIRAYKKVLKAD-------PN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------TTSAEAYYI 78 (184)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-------TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------CCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-------CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------chhHHHHHH
Confidence 67889999999999999999872 22 36789999999999999999999999887642 223667888
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|.++...+++..|...+.+++.+... ...+...+|.++..+|+. ++|+..+++++..-- ..+.++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~------~~~~~~~lg~~~~~~g~~--~~A~~~~~~~l~~~p------~~~~~~ 144 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTV------YADAYYKLGLVYDSMGEH--DKAIEAYEKTISIKP------GFIRAY 144 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCT------TCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHhCCc--hhHHHHHHHHHHhcc------hhhhHH
Confidence 999999999999999999998876422 235677899999999998 999999999986521 236689
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
..+|.++.. .|++++|+.++++|++.-
T Consensus 145 ~~lg~~~~~------~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 145 QSIGLAYEG------KGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHH------TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH------CCCHHHHHHHHHHHHhCC
Confidence 999999999 899999999999998753
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-07 Score=100.02 Aligned_cols=184 Identities=16% Similarity=-0.041 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++.++|..+...|+|++|...++.+.+..|...... ..+. ..+...|++++|...++++..+.+ .++
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~la-----~~~~~~g~~~~A~~~~~~a~~~~~----~~~- 145 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH-LNRG-----IALYYGGRDKLAQDDLLAFYQDDP----NDP- 145 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH-HHHH-----HHHHHTTCHHHHHHHHHHHHHHCT----TCH-
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHH-HHHH-----HHHHHhccHHHHHHHHHHHHHhCC----CCh-
Confidence 46788999999999999999999999998866432211 1111 567789999999999999988633 121
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
...... .+....|++++|+..+++++..... + .....++.++...++...|+..+.+++...... ..
T Consensus 146 ---~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 212 (275)
T 1xnf_A 146 ---FRSLWL-YLAEQKLDEKQAKEVLKQHFEKSDK--E-----QWGWNIVEFYLGNISEQTLMERLKADATDNTSL--AE 212 (275)
T ss_dssp ---HHHHHH-HHHHHHHCHHHHHHHHHHHHHHSCC--C-----STHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH--HH
T ss_pred ---HHHHHH-HHHHHhcCHHHHHHHHHHHHhcCCc--c-----hHHHHHHHHHHHhcCHHHHHHHHHHHhcccccc--cc
Confidence 222222 2346779999999999888774321 1 112346777888888888888888887765432 12
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEA 836 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LA 836 (924)
..+.+...+|.++..+|+. ++|+..+++++..- -.+....+.++..++
T Consensus 213 ~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~--p~~~~~~~~~~~~l~ 260 (275)
T 1xnf_A 213 HLSETNFYLGKYYLSLGDL--DSATALFKLAVANN--VHNFVEHRYALLELS 260 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTC--CTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCH--HHHHHHHHHHHhCC--chhHHHHHHHHHHHH
Confidence 2367788899999999998 99999999997652 223333344444443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2e-08 Score=122.73 Aligned_cols=161 Identities=14% Similarity=0.039 Sum_probs=139.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..+..+|++++|...+++++.+.+ . .+.+++++|.++..+|++++|++.+++++++. ...+.++..
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l~P-------~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~------P~~~~a~~n 82 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEVFP-------E-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS------PTFADAYSN 82 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS-------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHH
Confidence 788899999999999999999733 2 46889999999999999999999999999852 233778999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|.++...|++++|+..+.+|+++.- ..+.++.+||.++..+|+. ++|+..+++++.+-- ..+.++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P------~~~~a~~~Lg~~~~~~g~~--~eAi~~~~~Al~l~P------~~~~a~ 148 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINP------AFADAHSNLASIHKDSGNI--PEAIASYRTALKLKP------DFPDAY 148 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCS------CCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCC------CChHHH
Confidence 99999999999999999999998742 2357889999999999998 999999999987521 235688
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 867 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~ 867 (924)
..||.++.. .|++++|.+.+++++++...
T Consensus 149 ~~L~~~l~~------~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 149 CNLAHCLQI------VCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHH------TTCCTTHHHHHHHHHHHHHH
T ss_pred hhhhhHHHh------cccHHHHHHHHHHHHHhChh
Confidence 999999999 89999999999999987653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-07 Score=100.64 Aligned_cols=198 Identities=9% Similarity=-0.055 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++..+|..+...|+|++|...++.+.+.+|........... ++ ..++..|++.+|...+++++.+.+. + .
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~--lg-~~~~~~~~~~~A~~~~~~~l~~~p~----~-~ 86 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFY--LA-RAYYQNKEYLLAASEYERFIQIYQI----D-P 86 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHH--HH-HHHHHTTCHHHHHHHHHHHHHHCTT----C-T
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHH--HH-HHHHHhCcHHHHHHHHHHHHHHCCC----C-c
Confidence 5678999999999999999999999999887754321111111 11 6788999999999999999997542 2 2
Q ss_pred hHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHcccchhHHHHH--------------HHHHHHHHhcCC
Q 002424 705 LKTEASLRHARTLLA--------ANQFSEAAAVAHSLFCMCYKFNLQVENASVL--------------LLLAEIHKKSGN 762 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~--------~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al--------------~~la~i~~~~G~ 762 (924)
....+++.+|.++.. .|++++|+..+++++..... ......++ ..+|.++...|+
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 163 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN---HELVDDATQKIRELRAKLARKQYEAARLYERREL 163 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 267899999999999 99999999999999885332 11222233 889999999999
Q ss_pred hhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHc----------CCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 763 AVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSF----------GPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 763 ~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~l----------G~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+..|+..+.+++...- .......++..+|.++..+ |+. ++|+..+++++... .+......+.
T Consensus 164 ~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~--~~A~~~~~~~~~~~---p~~~~~~~a~ 235 (261)
T 3qky_A 164 YEAAAVTYEAVFDAYP---DTPWADDALVGAMRAYIAYAEQSVRARQPERY--RRAVELYERLLQIF---PDSPLLRTAE 235 (261)
T ss_dssp HHHHHHHHHHHHHHCT---TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHH--HHHHHHHHHHHHHC---TTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHhcccchhhcccchH--HHHHHHHHHHHHHC---CCChHHHHHH
Confidence 9999999999887542 2233557788899999877 665 89999999987653 2323334455
Q ss_pred HHHHHhhhc
Q 002424 833 IAEAKCLLS 841 (924)
Q Consensus 833 ~~LAr~~la 841 (924)
..+++++..
T Consensus 236 ~~l~~~~~~ 244 (261)
T 3qky_A 236 ELYTRARQR 244 (261)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.86 E-value=4e-08 Score=96.01 Aligned_cols=171 Identities=13% Similarity=-0.008 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCC
Q 002424 622 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 622 d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
+....++..+|..+...|++++|...++.+.+..+.. ...+. .+ ...+...|++++|...+.++..+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~---~~-~~~~~~~~~~~~A~~~~~~~~~~~~----- 73 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD--VDVAL---HL-GIAYVKTGAVDRGTELLERSLADAP----- 73 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC--HHHHH---HH-HHHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC--hHHHH---HH-HHHHHHcCCHHHHHHHHHHHHhcCC-----
Confidence 4567888999999999999999999999877654421 11111 11 1577889999999999999988622
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
+ ...+...++.++...|++++|.+.+++++.... ....++..+|.++...|+++.|+..+.+++.....
T Consensus 74 ~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-- 142 (186)
T 3as5_A 74 D---NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP------INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-- 142 (186)
T ss_dssp T---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred C---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc------HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc--
Confidence 1 357788999999999999999999999987522 23567889999999999999999999999887421
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
...+...+|.++...|+. ++|...+++++...-
T Consensus 143 ----~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 143 ----EGKVHRAIAFSYEQMGRH--EEALPHFKKANELDE 175 (186)
T ss_dssp ----CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHH
T ss_pred ----chHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCC
Confidence 146778899999999998 999999999987653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-07 Score=97.37 Aligned_cols=161 Identities=12% Similarity=-0.059 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++.++|..+...|+|++|...++.+.+..+.. +...+. .+ +..+...|++++|...+++++.+. |.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~---~~-~~~~~~~~~~~~A~~~~~~al~~~-------p~- 74 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-DSVTAY---NC-GVCADNIKKYKEAADYFDIAIKKN-------YN- 74 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-CHHHHH---HH-HHHHHHTTCHHHHHHHHHHHHHTT-------CS-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-CcHHHH---HH-HHHHHHhhcHHHHHHHHHHHHHhC-------cc-
Confidence 678899999999999999999999999886521 222111 11 167789999999999999999852 22
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL-QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd-~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
...+...+|.++...|++++|++.+++++........ ....+.++..+|.++...|++++|+..+.+++.+.- ..
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~ 150 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS----KK 150 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC----HH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC----Cc
Confidence 6788999999999999999999999999985332111 112347899999999999999999999999987621 11
Q ss_pred HHHHHHHHHHHHHHHcCCC
Q 002424 785 LKASATLTLAELWLSFGPN 803 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~ 803 (924)
..+.++..+|.++...|..
T Consensus 151 ~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 151 WKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 1367788888888777764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.6e-08 Score=103.34 Aligned_cols=201 Identities=12% Similarity=0.040 Sum_probs=150.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|+|.+|...+++++...+ +......+++.+|.++...|++++|++.+++++... .+......++..
T Consensus 23 ~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~ 94 (261)
T 3qky_A 23 MEFYNQGKYDRAIEYFKAVFTYGR-----THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY---QIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHGGGCS-----CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTTHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCC-----CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC---CCCchhHHHHHH
Confidence 577899999999999999988643 222357899999999999999999999999998853 223345678999
Q ss_pred HHHHHHh--------cCChhhhHHHHHHHHHHHHHhCCcHHHHHHH--------------HHHHHHHHHcCCChHHHHHH
Q 002424 753 LAEIHKK--------SGNAVLGIPYALASLSFCQLLNLDLLKASAT--------------LTLAELWLSFGPNHAKMASN 810 (924)
Q Consensus 753 la~i~~~--------~G~~~~Al~~l~~AL~la~~~g~~~~~A~al--------------~~La~l~~~lG~~~~~~Al~ 810 (924)
+|.++.. .|++..|+..+.+++...-... ....++ ..+|.++...|+. ++|+.
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~ 169 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE---LVDDATQKIRELRAKLARKQYEAARLYERRELY--EAAAV 169 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT---THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH--HHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH--HHHHH
Confidence 9999999 9999999999999887643221 122222 7799999999998 99999
Q ss_pred HHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCC----CCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 002424 811 LIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFS----VSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFD 886 (924)
Q Consensus 811 lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~----~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~ 886 (924)
.+++++... .+......+++.+|.++....... ..|++++|+.+++++++.+- +.....++...++.++.
T Consensus 170 ~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~a~~~l~~~~~ 243 (261)
T 3qky_A 170 TYEAVFDAY---PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---DSPLLRTAEELYTRARQ 243 (261)
T ss_dssp HHHHHHHHC---TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---TCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC---CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---CChHHHHHHHHHHHHHH
Confidence 999998653 222235567777887777511000 02788899999999988663 44445666777777777
Q ss_pred hcCCHH
Q 002424 887 KLGRLA 892 (924)
Q Consensus 887 ~lGd~~ 892 (924)
.+|..+
T Consensus 244 ~~~~~~ 249 (261)
T 3qky_A 244 RLTELE 249 (261)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 666553
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.77 E-value=7.2e-08 Score=99.35 Aligned_cols=150 Identities=11% Similarity=0.022 Sum_probs=118.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++.+|...+.+++.+.+. .| ..+.+.+|.++...|++++|++.+++++.. ......++..
T Consensus 15 ~~~~~~~~~~~A~~~~~~al~~~~~---~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~ 81 (228)
T 4i17_A 15 NDALNAKNYAVAFEKYSEYLKLTNN---QD----SVTAYNCGVCADNIKKYKEAADYFDIAIKK------NYNLANAYIG 81 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTT---CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCSHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhccCC---CC----cHHHHHHHHHHHHhhcHHHHHHHHHHHHHh------CcchHHHHHH
Confidence 6778999999999999999986320 13 356777999999999999999999999863 2336788999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLN-LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARA 831 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g-~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a 831 (924)
+|.++...|+++.|+..+.+++.+.-... .....+.+...+|.++..+|+. ++|+..+++++.. ......+.+
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~--~~A~~~~~~al~~----~p~~~~~~~ 155 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI--EKAEENYKHATDV----TSKKWKTDA 155 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHTTS----SCHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH--HHHHHHHHHHHhc----CCCcccHHH
Confidence 99999999999999999999998753221 2233456788999999999998 9999999999865 221113566
Q ss_pred HHHHHHhhhc
Q 002424 832 FIAEAKCLLS 841 (924)
Q Consensus 832 ~~~LAr~~la 841 (924)
+..+|.++..
T Consensus 156 ~~~l~~~~~~ 165 (228)
T 4i17_A 156 LYSLGVLFYN 165 (228)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.8e-06 Score=97.97 Aligned_cols=208 Identities=13% Similarity=0.025 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHcc---CHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHH----HcCCHHHHHHHHHHHhhhhhccC
Q 002424 627 AHVKLIQHLAVFK---GYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSL----HRGHLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 627 a~~~La~~~a~~G---~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al----~~G~~~~A~~~l~~ll~l~~~~~ 699 (924)
+..+||..+...| ++++|+..++.+.+.-+. .......+. ..+. ..+++.+|..+++++. + +
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~---~a~~~~~Lg---~~y~~g~~~~~d~~~A~~~~~~aa---~--g 246 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV---TAQRVDSVA---RVLGDATLGTPDEKTAQALLEKIA---P--G 246 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS---CHHHHHHHH---HHHTCGGGSSCCHHHHHHHHHHHG---G--G
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH---HHHHHHHHH---HHHhCCCCCCCCHHHHHHHHHHHc---C--C
Confidence 7899999999999 999999999988765321 111111111 2222 2369999999999986 2 2
Q ss_pred CCCcchHHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcC-----ChhhhHHHHH
Q 002424 700 GVDMDLKTEASLRHART-L--LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG-----NAVLGIPYAL 771 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~l-l--~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G-----~~~~Al~~l~ 771 (924)
...+.+++|.+ + ...|++++|+++++++... | ...++..+|.+|. .| ++.+|+.++.
T Consensus 247 ------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 247 ------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp ------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 34678888887 4 5799999999999998752 2 4778899999998 66 9999999999
Q ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCC
Q 002424 772 ASLSFCQLLNLDLLKASATLTLAELWLSFGP---NHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVS 848 (924)
Q Consensus 772 ~AL~la~~~g~~~~~A~al~~La~l~~~lG~---~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~ 848 (924)
+|. .|+ +.+...||.++.. |. ..+++|+..++.+.. .|+ ..+++.||.++.... +..
T Consensus 312 ~Aa-----~g~----~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~~G~--g~~ 371 (452)
T 3e4b_A 312 KAV-----GRE----VAADYYLGQIYRR-GYLGKVYPQKALDHLLTAAR----NGQ----NSADFAIAQLFSQGK--GTK 371 (452)
T ss_dssp TTT-----TTC----HHHHHHHHHHHHT-TTTSSCCHHHHHHHHHHHHT----TTC----TTHHHHHHHHHHSCT--TBC
T ss_pred HHh-----CCC----HHHHHHHHHHHHC-CCCCCcCHHHHHHHHHHHHh----hCh----HHHHHHHHHHHHhCC--CCC
Confidence 887 333 4678889988875 52 134999999999865 454 557889999998742 335
Q ss_pred CChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 002424 849 QNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKL 888 (924)
Q Consensus 849 g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~l 888 (924)
.++.+|..++++|.+ .+.+. +...++.+...+
T Consensus 372 ~d~~~A~~~~~~A~~----~g~~~----a~~~l~~l~~~~ 403 (452)
T 3e4b_A 372 PDPLNAYVFSQLAKA----QDTPE----ANDLATQLEAPL 403 (452)
T ss_dssp CCHHHHHHHHHHHHT----TCCHH----HHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHH----CCCHH----HHHHHHHHHHhC
Confidence 689999999999865 34432 334455554333
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.75 E-value=4.4e-07 Score=93.89 Aligned_cols=179 Identities=14% Similarity=0.020 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++.++|..+...|+|++|...++.+.+.+|........... ++ ..+...|+|.+|...+++++...+. + .
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~--lg-~~~~~~~~~~~A~~~~~~~l~~~P~----~-~ 75 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLD--LI-YAYYKNADLPLAQAAIDRFIRLNPT----H-P 75 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHH--HH-HHHHHTTCHHHHHHHHHHHHHHCTT----C-T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH--HH-HHHHhcCCHHHHHHHHHHHHHHCcC----C-C
Confidence 3567889999999999999999999999988754432211111 11 6778999999999999999987553 2 1
Q ss_pred hHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHcccchh-----------HHHHHHHHHH
Q 002424 705 LKTEASLRHARTLLA------------------ANQFSEAAAVAHSLFCMCYKFNLQVE-----------NASVLLLLAE 755 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~------------------~G~~~eAl~~l~~aL~~~~~~gd~~~-----------~a~al~~la~ 755 (924)
....+++.+|.++.. .|++++|+..+++++........... .......+|.
T Consensus 76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~ 155 (225)
T 2yhc_A 76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAE 155 (225)
T ss_dssp THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245678888888765 57999999999998874332111100 0123367899
Q ss_pred HHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 002424 756 IHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQAL 816 (924)
Q Consensus 756 i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aL 816 (924)
++...|++..|+..+.+++...- .......++..+|.++..+|+. ++|++.++.+.
T Consensus 156 ~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~g~~--~~A~~~~~~l~ 211 (225)
T 2yhc_A 156 YYTERGAWVAVVNRVEGMLRDYP---DTQATRDALPLMENAYRQMQMN--AQAEKVAKIIA 211 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHST---TSHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHCc---CCCccHHHHHHHHHHHHHcCCc--HHHHHHHHHHH
Confidence 99999999999999999887642 2344567889999999999998 99999988654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.6e-07 Score=91.73 Aligned_cols=171 Identities=14% Similarity=0.072 Sum_probs=139.7
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
|+.....+...++..+...|++++|++.+++++... .....++..+|.++...|+++.|+..+.+++.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--- 73 (186)
T 3as5_A 3 NDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP--- 73 (186)
T ss_dssp -CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---
T ss_pred ccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---
Confidence 455678899999999999999999999999886531 12367889999999999999999999999988732
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
....+...+|.++...|+. ++|+.++++++..... ...++..+|.++.. .|++++|+.+++++
T Consensus 74 ---~~~~~~~~~a~~~~~~~~~--~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~------~~~~~~A~~~~~~~ 136 (186)
T 3as5_A 74 ---DNVKVATVLGLTYVQVQKY--DLAVPLLIKVAEANPI------NFNVRFRLGVALDN------LGRFDEAIDSFKIA 136 (186)
T ss_dssp ---TCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH------TTCHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHhcCH--HHHHHHHHHHHhcCcH------hHHHHHHHHHHHHH------cCcHHHHHHHHHHH
Confidence 1246678899999999998 9999999999876321 24678899999999 89999999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 862 SEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 862 ~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
+.... ....++..+|.++...|+.+++.++.....++
T Consensus 137 ~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 137 LGLRP------NEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCc------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 88642 12578899999999999999987766665544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.72 E-value=4.2e-07 Score=102.81 Aligned_cols=184 Identities=10% Similarity=-0.028 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHccC-HHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 625 ALAHVKLIQHLAVFKG-YKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~-y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
..++.++|.++...|+ |++|+..++++.+.-|.. ...|... . ..+...|++.+|...+++++.+ ||
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~--~~a~~~~-g---~~~~~~g~~~eAl~~~~kal~l-------dP 197 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN--YQVWHHR-R---VLVEWLRDPSQELEFIADILNQ-------DA 197 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC--HHHHHHH-H---HHHHHHTCCTTHHHHHHHHHHH-------CT
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC--HHHHHHH-H---HHHHHccCHHHHHHHHHHHHHh-------Cc
Confidence 4788999999999997 999999999999886642 2223211 1 4566789999999999999997 32
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh-cCChhhh-----HHHHHHHHHHH
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK-SGNAVLG-----IPYALASLSFC 777 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~-~G~~~~A-----l~~l~~AL~la 777 (924)
. -..+++++|.++...|++++|++.+++++.+- .....++..+|.++.. .|..+.| +..+.+|+.+.
T Consensus 198 ~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~ 270 (382)
T 2h6f_A 198 K-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270 (382)
T ss_dssp T-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred c-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC
Confidence 2 46889999999999999999999999999842 2346788999999999 6665777 47788887764
Q ss_pred HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhc
Q 002424 778 QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 841 (924)
Q Consensus 778 ~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la 841 (924)
-. -..+...++.++...|...+++|++.++++ . ..-. -..++..||.++..
T Consensus 271 P~------~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~----~~~al~~La~~~~~ 321 (382)
T 2h6f_A 271 PH------NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHS----SPYLIAFLVDIYED 321 (382)
T ss_dssp TT------CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCC----CHHHHHHHHHHHHH
T ss_pred CC------CHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCC----CHHHHHHHHHHHHH
Confidence 22 235778899999888842238998888775 2 1222 24577788888877
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.2e-07 Score=100.74 Aligned_cols=217 Identities=10% Similarity=0.009 Sum_probs=153.7
Q ss_pred HHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHH
Q 002424 635 LAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHA 714 (924)
Q Consensus 635 ~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a 714 (924)
....|.|.+|+..++.....-| ....-. . .+..+.++..|++++|...++.. ++. ...+...++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p---~~~~e~-~-~~l~r~yi~~g~~~~al~~~~~~----------~~~-~~~a~~~la 72 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSP---ERDVER-D-VFLYRAYLAQRKYGVVLDEIKPS----------SAP-ELQAVRMFA 72 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSH---HHHHHH-H-HHHHHHHHHTTCHHHHHHHSCTT----------SCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCc---hhhHHH-H-HHHHHHHHHCCCHHHHHHHhccc----------CCh-hHHHHHHHH
Confidence 4568999999998874332211 111111 1 11126788999999998755331 222 568888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 002424 715 RTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLA 794 (924)
Q Consensus 715 ~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La 794 (924)
.++...|++++|++.+++++.. +.......++..+|.++...|+++.|+..+.+ . ....+...+|
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~----~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------~---~~~~~~~~l~ 137 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSR----SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------G---DSLECMAMTV 137 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHS----CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------C---CSHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHHHHHhc----ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------C---CCHHHHHHHH
Confidence 9999999999999999988762 21233467899999999999999999999877 1 2235677899
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHH
Q 002424 795 ELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELA 874 (924)
Q Consensus 795 ~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~ 874 (924)
.++..+|+. ++|...+++++..- -.+. .......+..++.. .|++++|+..++++++.+- .-
T Consensus 138 ~~~~~~g~~--~~A~~~l~~~~~~~--p~~~--~~~l~~a~~~l~~~------~~~~~eA~~~~~~~l~~~p------~~ 199 (291)
T 3mkr_A 138 QILLKLDRL--DLARKELKKMQDQD--EDAT--LTQLATAWVSLAAG------GEKLQDAYYIFQEMADKCS------PT 199 (291)
T ss_dssp HHHHHTTCH--HHHHHHHHHHHHHC--TTCH--HHHHHHHHHHHHHC------TTHHHHHHHHHHHHHHHSC------CC
T ss_pred HHHHHCCCH--HHHHHHHHHHHhhC--cCcH--HHHHHHHHHHHHhC------chHHHHHHHHHHHHHHhCC------Cc
Confidence 999999998 99999999997662 1121 11111112233334 6889999999999988632 24
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002424 875 AEAFYLIAIVFDKLGRLAEREEAAAL 900 (924)
Q Consensus 875 ~~vl~~lA~l~~~lGd~~~r~~aa~~ 900 (924)
..++..+|.++...|+.+++.++...
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56889999999999999997774443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.6e-07 Score=98.75 Aligned_cols=170 Identities=16% Similarity=0.103 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
...+..+|..+...|++++|.+.++++.+..|...... ..+. ..++..|++++|...++++... +|.
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~-~~la-----~~~~~~g~~~~A~~~l~~~~~~-------~p~ 183 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIG-LLLA-----ETLIALNRSEDAEAVLXTIPLQ-------DQD 183 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHH-HHHH-----HHHHHTTCHHHHHHHHTTSCGG-------GCS
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHH-HHHH-----HHHHHCCCHHHHHHHHHhCchh-------hcc
Confidence 35678899999999999999999999998877432211 1122 6788999999999999998775 232
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
........+..+...|+.++|++.+++++.. ......++..+|.++...|+++.|+..+.+++...-..
T Consensus 184 -~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~---- 252 (287)
T 3qou_A 184 -TRYQGLVAQIELLXQAADTPEIQQLQQQVAE------NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA---- 252 (287)
T ss_dssp -HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG----
T ss_pred -hHHHHHHHHHHHHhhcccCccHHHHHHHHhc------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc----
Confidence 4456667777788999999999999988874 23346789999999999999999999999998874322
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
..+.++..|+.++..+|+. ++|...++++|..++
T Consensus 253 ~~~~a~~~l~~~~~~~g~~--~~a~~~~r~al~~~l 286 (287)
T 3qou_A 253 ADGQTRXTFQEILAALGTG--DALASXYRRQLYALL 286 (287)
T ss_dssp GGGHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHcCCC--CcHHHHHHHHHHHhh
Confidence 2357788999999999998 899999999987754
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.63 E-value=5.3e-07 Score=109.70 Aligned_cols=192 Identities=18% Similarity=0.130 Sum_probs=143.6
Q ss_pred HHccCHHHHHHHHHHHH--------HHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHH
Q 002424 636 AVFKGYKEAFSALKIAE--------EKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 707 (924)
Q Consensus 636 a~~G~y~eA~~~L~~a~--------~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a 707 (924)
...|+|++|++.++++. +..+.... .+. . . ...++..|++++|...+++++.+.+ + ..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~--~~~-~--~-a~~~~~~g~~~~A~~~~~~al~~~p-----~---~~ 467 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVE--LPL-M--E-VRALLDLGDVAKATRKLDDLAERVG-----W---RW 467 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSH--HHH-H--H-HHHHHHHTCHHHHHHHHHHHHHHHC-----C---CH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchh--HHH-H--H-HHHHHhcCCHHHHHHHHHHHhccCc-----c---hH
Confidence 57899999999999988 33332211 111 1 1 1577889999999999999998633 1 36
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
.+++.+|.++...|++++|++.++++++... ....++..+|.++...|++++ +..+.+|+.+.-. .+
T Consensus 468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P------~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~------~~ 534 (681)
T 2pzi_A 468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFP------GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG------VI 534 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST------TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT------CH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc------hH
Confidence 8899999999999999999999999998532 236678899999999999999 9999999987422 23
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHH-HHHHHHHHHHHH
Q 002424 788 SATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAV-LDPLRQASEELQ 866 (924)
Q Consensus 788 ~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~A-l~~L~~A~~~f~ 866 (924)
.++..+|.++..+|+. ++|+..+++++..- . .-+.++..+|.+++. .+.+.++ .+-+++|.+.+.
T Consensus 535 ~a~~~lg~~~~~~g~~--~~A~~~~~~al~l~----P--~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~A~~~l~ 600 (681)
T 2pzi_A 535 SAAFGLARARSAEGDR--VGAVRTLDEVPPTS----R--HFTTARLTSAVTLLS------GRSTSEVTEEQIRDAARRVE 600 (681)
T ss_dssp HHHHHHHHHHHHTTCH--HHHHHHHHTSCTTS----T--THHHHHHHHHHHTC-------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCH--HHHHHHHHhhcccC----c--ccHHHHHHHHHHHHc------cCCCCCCCHHHHHHHHHHHh
Confidence 5778899999999998 99999999987542 2 235677888888877 4443444 566777777776
Q ss_pred hh
Q 002424 867 VL 868 (924)
Q Consensus 867 ~l 868 (924)
++
T Consensus 601 ~~ 602 (681)
T 2pzi_A 601 AL 602 (681)
T ss_dssp TS
T ss_pred hC
Confidence 66
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.3e-07 Score=94.96 Aligned_cols=161 Identities=13% Similarity=0.059 Sum_probs=119.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLR----------------HARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~----------------~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
..++..|++++|...+++++.+ ||. ...+++. +|.++...|++++|+..+++++..
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~-------~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIAL-------NID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-------CHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-------CCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4556778888888888877775 222 3445555 999999999999999999999985
Q ss_pred HHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 002424 737 CYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQAL 816 (924)
Q Consensus 737 ~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aL 816 (924)
. .....++..+|.++...|++++|+..+.+++.+.-. .+.++..||.++...|..+.+.+...++.++
T Consensus 84 ~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 84 A------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD------NLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp C------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred C------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 2 223678999999999999999999999999987422 2467788999987777653355555555543
Q ss_pred hHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 002424 817 PLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 866 (924)
Q Consensus 817 p~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~ 866 (924)
. .+.. ..+++.+|.++.. .|++.+|+.++++|++.+-
T Consensus 152 ~-----~~~~--~~a~~~~g~~~~~------~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 152 S-----PTKM--QYARYRDGLSKLF------TTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp C-----CCHH--HHHHHHHHHHHHH------HHTHHHHHHHHHHHTTTSC
T ss_pred C-----CCch--hHHHHHHHHHHHH------ccCHHHHHHHHHHHHHhCC
Confidence 2 2322 3356667777777 7899999999999998764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.4e-06 Score=99.56 Aligned_cols=150 Identities=9% Similarity=-0.059 Sum_probs=120.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhc-cCchHHHHHH-HhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLS-VSKSRILLLK-LQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~-~~~~~~~~l~-l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
....+..+..+|+|++|..++++++++... ++..+...+. ++.++..+..+|+|++|..++++++.+...+-+.+-..
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 344455567899999999999999997655 4554433332 44444888999999999999999999876554444344
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cccc-hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-FNLQ-VENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~-~gd~-~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
.+..++++|.++..+|+|++|..++++++++... .|.. ...+.++.++++++...|.+..|...+.++.+.|
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999998776 4544 4567788999999999999999999999887665
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.3e-07 Score=97.10 Aligned_cols=218 Identities=9% Similarity=-0.075 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHh-hHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 622 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQ-LLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 622 d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~-l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
++.+..+...|.-+ .-+++.+|.+.|.++.+.-|+..+...+.+... .........++..++...+++.+.+.+..-.
T Consensus 4 ~~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~ 82 (282)
T 4f3v_A 4 TDRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN 82 (282)
T ss_dssp HHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGC
T ss_pred hHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhh
Confidence 34555666666665 579999999999999998776555332222100 0013444455566777777777664332110
Q ss_pred C-----------C--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhH
Q 002424 701 V-----------D--MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGI 767 (924)
Q Consensus 701 ~-----------D--~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al 767 (924)
. + ......+.+..+.++...|+|++|.+.++.++. +.+ ... +...+|.++.+.|++..|+
T Consensus 83 a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p-~~~-~~~~~a~l~~~~~r~~dA~ 155 (282)
T 4f3v_A 83 ARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-----AGS-EHL-VAWMKAVVYGAAERWTDVI 155 (282)
T ss_dssp CEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTC-HHH-HHHHHHHHHHHTTCHHHHH
T ss_pred hhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCC-chH-HHHHHHHHHHHcCCHHHHH
Confidence 0 0 112457778899999999999999999987765 333 334 8899999999999999999
Q ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCC--HHHHHHHHHHHHHhhhcCCCC
Q 002424 768 PYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG--LELRARAFIAEAKCLLSDPSF 845 (924)
Q Consensus 768 ~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd--~~~~A~a~~~LAr~~la~~~~ 845 (924)
..+.++... .++.....+...||.++..+|+. ++|+..+++++. |. +.....+.+.+|.|+..
T Consensus 156 ~~l~~a~~~----~d~~~~~~a~~~LG~al~~LG~~--~eAl~~l~~a~~-----g~~~P~~~~da~~~~glaL~~---- 220 (282)
T 4f3v_A 156 DQVKSAGKW----PDKFLAGAAGVAHGVAAANLALF--TEAERRLTEAND-----SPAGEACARAIAWYLAMARRS---- 220 (282)
T ss_dssp HHHTTGGGC----SCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHT-----STTTTTTHHHHHHHHHHHHHH----
T ss_pred HHHHHhhcc----CCcccHHHHHHHHHHHHHHCCCH--HHHHHHHHHHhc-----CCCCccccHHHHHHHHHHHHH----
Confidence 999765433 25556677889999999999997 999999999872 22 32355677888999999
Q ss_pred CCCCChHHHHHHHHHHHHH
Q 002424 846 SVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 846 ~~~g~~~~Al~~L~~A~~~ 864 (924)
.|+.++|...|+++++.
T Consensus 221 --lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 221 --QGNESAAVALLEWLQTT 237 (282)
T ss_dssp --HTCHHHHHHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHHHhc
Confidence 89999999999999874
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.6e-07 Score=112.49 Aligned_cols=183 Identities=12% Similarity=-0.060 Sum_probs=139.8
Q ss_pred HHHHcCCHHHHHHHHHHHhhhh-hccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMA-SSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~-~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..+..|++.+|.+.+++++... ......+|. ...+++.+|.++...|++++|++.++++++... ....++..
T Consensus 400 ~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~ 472 (681)
T 2pzi_A 400 QATVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERVG------WRWRLVWY 472 (681)
T ss_dssp HHTTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC------CCHHHHHH
T ss_pred hcccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc------chHHHHHH
Confidence 3478999999999999998100 000000221 457899999999999999999999999988532 23678999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|.++...|++++|+..+.+|+.+.-.. +.++..+|.++..+|+. ++ +..+++++..-- . .+.++
T Consensus 473 lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~~~~~g~~--~~-~~~~~~al~~~P--~----~~~a~ 537 (681)
T 2pzi_A 473 RAVAELLTGDYDSATKHFTEVLDTFPGE------LAPKLALAATAELAGNT--DE-HKFYQTVWSTND--G----VISAA 537 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCC--CT-TCHHHHHHHHCT--T----CHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCh--HH-HHHHHHHHHhCC--c----hHHHH
Confidence 9999999999999999999999885322 46778899999999999 88 999999976521 1 24588
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCC
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGR 890 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd 890 (924)
+.+|.++.. .|++++|+.++++|++.- ..-..+++.+|.++...|+
T Consensus 538 ~~lg~~~~~------~g~~~~A~~~~~~al~l~------P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 538 FGLARARSA------EGDRVGAVRTLDEVPPTS------RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHH------TTCHHHHHHHHHTSCTTS------TTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHH------cCCHHHHHHHHHhhcccC------cccHHHHHHHHHHHHccCC
Confidence 999999999 899999999999887542 2335677788888766665
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.48 E-value=3.9e-06 Score=86.67 Aligned_cols=172 Identities=10% Similarity=-0.030 Sum_probs=129.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|+|++|...+++++...+ +......+.+.+|.++...|++++|++.+++++.... +......++..
T Consensus 12 ~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P---~~~~~~~a~~~ 83 (225)
T 2yhc_A 12 QQKLQDGNWRQAITQLEALDNRYP-----FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP---THPNIDYVMYM 83 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-----TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTTHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---CCCcHHHHHHH
Confidence 567889999999999999998643 1122568899999999999999999999999987432 22233456777
Q ss_pred HHHHHHh------------------cCChhhhHHHHHHHHHHHHHhCCc-----------HHHHHHHHHHHHHHHHcCCC
Q 002424 753 LAEIHKK------------------SGNAVLGIPYALASLSFCQLLNLD-----------LLKASATLTLAELWLSFGPN 803 (924)
Q Consensus 753 la~i~~~------------------~G~~~~Al~~l~~AL~la~~~g~~-----------~~~A~al~~La~l~~~lG~~ 803 (924)
+|.++.. .|++++|+..+.+++...-..... ...+.....+|.++...|+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 7777765 678999999998877653221111 01122335688899999998
Q ss_pred hHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 804 HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 804 ~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
++|+..+++++... .+......++..+|.++.. .|++++|+.+++.+..
T Consensus 164 --~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~------~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 164 --VAVVNRVEGMLRDY---PDTQATRDALPLMENAYRQ------MQMNAQAEKVAKIIAA 212 (225)
T ss_dssp --HHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHC---cCCCccHHHHHHHHHHHHH------cCCcHHHHHHHHHHHh
Confidence 99999999987653 3333456789999999999 9999999999987754
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.9e-06 Score=98.88 Aligned_cols=146 Identities=9% Similarity=0.019 Sum_probs=121.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cc-cchhHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-FN-LQVENASVL 750 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~-~g-d~~~~a~al 750 (924)
..+..+|+|++|+.++++++.+...+-+.+-...+.++.+++.++..+|+|++|..++++++++..+ .| +....+..+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4556899999999999999998765543343347899999999999999999999999999998776 33 335568899
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHHHh-CC-cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 751 LLLAEIHKKSGNAVLGIPYALASLSFCQLL-NL-DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 751 ~~la~i~~~~G~~~~Al~~l~~AL~la~~~-g~-~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
.++|.+|...|++++|..++.+|+.+.... |. ....+..+..|+.++..+|.. ++|..++.++...++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~--~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMF--RQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 999999999999999999999999999554 54 456777788899999889887 999999988865553
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.45 E-value=8.7e-06 Score=88.34 Aligned_cols=224 Identities=10% Similarity=0.002 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHhhccCchHHHHHHHhhHH---HHHHHcCCH-------HHHHHHHHHHhh-hhhccCCCCcchHHHHH
Q 002424 642 KEAFSALKIAEEKFLSVSKSRILLLKLQLLH---ERSLHRGHL-------KLAQKVCDELGV-MASSVTGVDMDLKTEAS 710 (924)
Q Consensus 642 ~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~---~~al~~G~~-------~~A~~~l~~ll~-l~~~~~~~D~~~~a~a~ 710 (924)
++|...++++....|... .+|.-...... ......|++ ++|...+++++. +.+ + ...++
T Consensus 33 ~~a~~~~~~al~~~p~~~--~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-----~---~~~~~ 102 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHP--DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-----K---NMLLY 102 (308)
T ss_dssp HHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-----T---CHHHH
T ss_pred HHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-----c---cHHHH
Confidence 678888998888776432 23332211100 011246885 999999999988 422 1 35688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASAT 790 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al 790 (924)
...+.++...|++++|.+.+++++.. .+.....++..+|.++.+.|+++.|+..+.+|+.+.... ..+.
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~ 171 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR------HHVY 171 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC------THHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHH
Confidence 89999999999999999999999873 121111288899999999999999999999998764211 2223
Q ss_pred HHHHHHHH-HcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhc
Q 002424 791 LTLAELWL-SFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLE 869 (924)
Q Consensus 791 ~~La~l~~-~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~ 869 (924)
...+.+.. ..|+. ++|+.++++++...- + ...++..+|..+.. .|++++|+..+++|+.... -
T Consensus 172 ~~~a~~~~~~~~~~--~~A~~~~~~al~~~p---~---~~~~~~~~~~~~~~------~g~~~~A~~~~~~al~~~~--l 235 (308)
T 2ond_A 172 VTAALMEYYCSKDK--SVAFKIFELGLKKYG---D---IPEYVLAYIDYLSH------LNEDNNTRVLFERVLTSGS--L 235 (308)
T ss_dssp HHHHHHHHHTSCCH--HHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHSSS--S
T ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHHHhCC---C---cHHHHHHHHHHHHH------CCCHHHHHHHHHHHHhccC--C
Confidence 33343322 26887 999999999987642 2 35678888988888 8999999999999986310 0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002424 870 DHELAAEAFYLIAIVFDKLGRLAEREEAAALFK 902 (924)
Q Consensus 870 ~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~ 902 (924)
.+.....++...+.+....|+.+.+........
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222345677778888889999988765444433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.3e-06 Score=86.26 Aligned_cols=169 Identities=11% Similarity=-0.068 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHH-----------HHHHhhHHHHHHHcCCHHHHHHHHHHHhhh
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRIL-----------LLKLQLLHERSLHRGHLKLAQKVCDELGVM 694 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~-----------~l~l~l~~~~al~~G~~~~A~~~l~~ll~l 694 (924)
..+...|..+...|+|++|...++++.+..|.......+ .+...+ +..+...|++++|...+++++.+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATEL-ALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHH
Confidence 456778889999999999999999999887643221111 011112 26778999999999999999987
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChh--hhHHHHHH
Q 002424 695 ASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAV--LGIPYALA 772 (924)
Q Consensus 695 ~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~--~Al~~l~~ 772 (924)
.+ . ...+++.+|.++...|++++|++.+++++... .....++..+|.++...|+.. .+...+.+
T Consensus 84 ~p-------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~ 149 (208)
T 3urz_A 84 AP-------N-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE------ADNLAANIFLGNYYYLTAEQEKKKLETDYKK 149 (208)
T ss_dssp CT-------T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CC-------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 32 2 35889999999999999999999999999852 233678889999987766543 23333333
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 773 SLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 773 AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
++ .+.....+...+|.++..+|.. ++|+..+++++..
T Consensus 150 ~~-------~~~~~~~a~~~~g~~~~~~~~~--~~A~~~~~~al~l 186 (208)
T 3urz_A 150 LS-------SPTKMQYARYRDGLSKLFTTRY--EKARNSLQKVILR 186 (208)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHTH--HHHHHHHHHHTTT
T ss_pred Hh-------CCCchhHHHHHHHHHHHHccCH--HHHHHHHHHHHHh
Confidence 32 1222223455677777778887 9999999999865
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.43 E-value=7.9e-06 Score=88.69 Aligned_cols=192 Identities=9% Similarity=-0.025 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHH-HhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHH
Q 002424 641 YKEAFSALKIAEE-KFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLA 719 (924)
Q Consensus 641 y~eA~~~L~~a~~-~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~ 719 (924)
+++|...+++|.+ ..|. ...+|.... ......|++++|...+++++.+.+ .++ ..++...+.++.+
T Consensus 80 ~~~A~~~~~rAl~~~~p~--~~~~~~~~~----~~~~~~~~~~~A~~~~~~al~~~p----~~~---~~~~~~~~~~~~~ 146 (308)
T 2ond_A 80 SDEAANIYERAISTLLKK--NMLLYFAYA----DYEESRMKYEKVHSIYNRLLAIED----IDP---TLVYIQYMKFARR 146 (308)
T ss_dssp HHHHHHHHHHHHTTTTTT--CHHHHHHHH----HHHHHTTCHHHHHHHHHHHHTSSS----SCT---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcc--cHHHHHHHH----HHHHhcCCHHHHHHHHHHHHhccc----cCc---cHHHHHHHHHHHH
Confidence 4999999999998 3442 222343221 456789999999999999998522 232 1378899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 002424 720 ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHK-KSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWL 798 (924)
Q Consensus 720 ~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~-~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~ 798 (924)
.|++++|...+++++.... .. ..+....+.+.. ..|+++.|+..+.+++.+.-. ...+...++.++.
T Consensus 147 ~~~~~~A~~~~~~a~~~~p----~~--~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~ 214 (308)
T 2ond_A 147 AEGIKSGRMIFKKAREDAR----TR--HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD------IPEYVLAYIDYLS 214 (308)
T ss_dssp HHCHHHHHHHHHHHHTSTT----CC--THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCC----CC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHH
Confidence 9999999999999987421 11 344445555533 379999999999999987532 2466788999999
Q ss_pred HcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 002424 799 SFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 867 (924)
Q Consensus 799 ~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~ 867 (924)
.+|+. ++|+.++++++... .-++.....++..++..... .|+.++|...+++|.+.+-.
T Consensus 215 ~~g~~--~~A~~~~~~al~~~--~l~p~~~~~l~~~~~~~~~~------~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 215 HLNED--NNTRVLFERVLTSG--SLPPEKSGEIWARFLAFESN------IGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp TTCCH--HHHHHHHHHHHHSS--SSCGGGCHHHHHHHHHHHHH------HSCHHHHHHHHHHHHHHTTT
T ss_pred HCCCH--HHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHccc
Confidence 99998 99999999997631 00212234566667777777 79999999999999988753
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.42 E-value=0.0013 Score=76.69 Aligned_cols=225 Identities=11% Similarity=0.046 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHH----HHcCCHH-------HHHHHHHHHhh-hhhccCCCCcchHHHH
Q 002424 642 KEAFSALKIAEEKFLSVSKSRILLLKLQLLHERS----LHRGHLK-------LAQKVCDELGV-MASSVTGVDMDLKTEA 709 (924)
Q Consensus 642 ~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~a----l~~G~~~-------~A~~~l~~ll~-l~~~~~~~D~~~~a~a 709 (924)
..|...++++....|.. ..+|.....+. ... -..|+++ +|...+++++. +.+ + ...+
T Consensus 255 ~~a~~~y~~al~~~p~~--~~~w~~~~~~~-~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p-----~---~~~l 323 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHH--PDIWYEAAQYL-EQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-----K---NMLL 323 (530)
T ss_dssp HHHHHHHHHHHHHHTTC--HHHHHHHHHHH-HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS-----S---CHHH
T ss_pred HHHHHHHHHHHHhCCCC--HHHHHHHHHHH-HHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc-----c---cHHH
Confidence 47788999999887632 33454331110 110 0279987 89999999886 322 2 4678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHH
Q 002424 710 SLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASA 789 (924)
Q Consensus 710 ~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~a 789 (924)
+...+.++...|++++|.+.+++++.. .+.....+++..+.+..+.|++++|+..+.+|+..... . ..+
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~-----~~~ 392 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-R-----HHV 392 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS-----SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-C-----THH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCc-----cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-c-----hHH
Confidence 889999999999999999999999873 22222358889999999999999999999999875321 1 111
Q ss_pred HHHHHHH-HHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhh
Q 002424 790 TLTLAEL-WLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL 868 (924)
Q Consensus 790 l~~La~l-~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l 868 (924)
....+.+ +...|+. ++|+.++++++... ++ ...++..++..... .|+.++|...+++|+....
T Consensus 393 ~~~~a~~~~~~~~~~--~~A~~~~e~al~~~---p~---~~~~~~~~~~~~~~------~g~~~~Ar~~~~~al~~~~-- 456 (530)
T 2ooe_A 393 YVTAALMEYYCSKDK--SVAFKIFELGLKKY---GD---IPEYVLAYIDYLSH------LNEDNNTRVLFERVLTSGS-- 456 (530)
T ss_dssp HHHHHHHHHHHTCCH--HHHHHHHHHHHHHH---TT---CHHHHHHHHHHHTT------TTCHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHcCCh--hHHHHHHHHHHHHC---CC---CHHHHHHHHHHHHh------CCCHhhHHHHHHHHHhccC--
Confidence 2222222 2358887 99999999998764 22 24677888888888 8999999999999987421
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 869 EDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 869 ~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
.++.....++..........|+.+.+..+.....+.
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 134444556666677778889998877766655554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-06 Score=86.23 Aligned_cols=166 Identities=13% Similarity=0.059 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
....+|..+...|+|++|...++++.+..|.... .+. .+ ...++..|++++|...+++++.+. + |+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~--a~~---~l-a~~~~~~g~~~~A~~~~~~a~~~~----p-~~--- 73 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD--VKL---AK-ADCLLETKQFELAQELLATIPLEY----Q-DN--- 73 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH--HHH---HH-HHHHHHTTCHHHHHHHHTTCCGGG----C-CH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--HHH---HH-HHHHHHCCCHHHHHHHHHHhhhcc----C-Ch---
Confidence 4678889999999999999999998887664322 111 11 157789999999999999987642 1 32
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 707 TEASLRHARTL-LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 707 a~a~~~~a~ll-~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
......+.+. ...++..+|++.+++++... .....++..+|.++...|++++|+..+.+++.+.-.. .
T Consensus 74 -~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~ 142 (176)
T 2r5s_A 74 -SYKSLIAKLELHQQAAESPELKRLEQELAAN------PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA----Q 142 (176)
T ss_dssp -HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT----T
T ss_pred -HHHHHHHHHHHHhhcccchHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc----C
Confidence 2223333332 23344556788888887642 2236788999999999999999999999988764221 1
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
...++..|+.++..+|+. ++|...++++|..+
T Consensus 143 ~~~a~~~l~~~~~~~g~~--~~A~~~y~~al~~~ 174 (176)
T 2r5s_A 143 DGEVKKTFMDILSALGQG--NAIASKYRRQLYSI 174 (176)
T ss_dssp TTHHHHHHHHHHHHHCSS--CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHH
Confidence 235678899999999999 99999999988654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.1e-06 Score=85.58 Aligned_cols=139 Identities=13% Similarity=-0.015 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
..+..+.++|..+...|+|++|...++++... ....+ ..++ ..+...|++.+|...+.+++.+.+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-----~~~~~---~~lg-~~~~~~g~~~~A~~~~~~al~~~~------ 68 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQDP-----HSRIC---FNIG-CMYTILKNMTEAEKAFTRSINRDK------ 68 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC-----CHHHH---HHHH-HHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC-----ChHHH---HHHH-HHHHHcCCHHHHHHHHHHHHHhCc------
Confidence 45677889999999999999999999977311 11111 1122 677899999999999999998632
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc----------cchhHHHHHHHHHHHHHhcCChhhhHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN----------LQVENASVLLLLAEIHKKSGNAVLGIPYALA 772 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~g----------d~~~~a~al~~la~i~~~~G~~~~Al~~l~~ 772 (924)
. ...+++++|.++...|++++|++.+++++....... .......++..+|.++...|+++.|+..+.+
T Consensus 69 -~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 69 -H-LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp -T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -c-chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 1 357899999999999999999999999998655433 3345678999999999999999999999999
Q ss_pred HHHHHH
Q 002424 773 SLSFCQ 778 (924)
Q Consensus 773 AL~la~ 778 (924)
++.+..
T Consensus 147 al~~~p 152 (213)
T 1hh8_A 147 ATSMKS 152 (213)
T ss_dssp HHTTCC
T ss_pred HHHcCc
Confidence 988754
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-05 Score=77.59 Aligned_cols=143 Identities=13% Similarity=-0.042 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCC
Q 002424 622 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 622 d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
...+..+..+|..+...|+|++|...++.+....+.. ...+. .++ ..+...|++.+|...+.+++.+.+
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~---~~a-~~~~~~~~~~~A~~~~~~a~~~~~----- 78 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN--AIYYG---NRS-LAYLRTECYGYALGDATRAIELDK----- 78 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHH---HHH-HHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--hHHHH---HHH-HHHHHcCCHHHHHHHHHHHHHhCc-----
Confidence 3567888999999999999999999999999876532 11111 111 577889999999999999998632
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
. ...+...+|.++...|++++|++.+++++.. ......+.....++.++...|++.+|+..+.++..+.....
T Consensus 79 --~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (166)
T 1a17_A 79 --K-YIKGYYRRAASNMALGKFRAALRDYETVVKV----KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD 151 (166)
T ss_dssp --T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred --c-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccc
Confidence 1 3578899999999999999999999999875 23334455667777778899999999999998888876554
Q ss_pred C
Q 002424 782 L 782 (924)
Q Consensus 782 ~ 782 (924)
.
T Consensus 152 ~ 152 (166)
T 1a17_A 152 I 152 (166)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-06 Score=103.39 Aligned_cols=158 Identities=8% Similarity=-0.073 Sum_probs=115.8
Q ss_pred cCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH
Q 002424 678 RGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIH 757 (924)
Q Consensus 678 ~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~ 757 (924)
.|++++|...+++++.+.+ . ...++..+|.++...|++++|++.+++++... .....++..+|.++
T Consensus 2 ~g~~~~A~~~~~~al~~~p-------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~ 67 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-------Q-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH------PGHPEAVARLGRVR 67 (568)
T ss_dssp --------------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS------TTCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Confidence 4889999999999887522 1 35789999999999999999999999998742 23367899999999
Q ss_pred HhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHH
Q 002424 758 KKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAK 837 (924)
Q Consensus 758 ~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr 837 (924)
...|++++|+..+.+++.+.-. .+.++..+|.++..+|+. ++|+..+++++..-- . ...++..+|.
T Consensus 68 ~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p--~----~~~~~~~l~~ 133 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDAAPE------HPGIALWLGHALEDAGQA--EAAAAAYTRAHQLLP--E----EPYITAQLLN 133 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCT--T----CHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCC--C----CHHHHHHHHH
Confidence 9999999999999999987432 256788899999999998 999999999987632 1 2467888999
Q ss_pred hhhcCCCCCCC---CChHHHHHHHHHHHHHHHhhc
Q 002424 838 CLLSDPSFSVS---QNPEAVLDPLRQASEELQVLE 869 (924)
Q Consensus 838 ~~la~~~~~~~---g~~~~Al~~L~~A~~~f~~l~ 869 (924)
++.. . |+.++|+..+++|++......
T Consensus 134 ~~~~------~~~~g~~~~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 134 WRRR------LCDWRALDVLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp HHHH------TTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred HHHH------hhccccHHHHHHHHHHHHhcCCccc
Confidence 9998 7 999999999999988765443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.37 E-value=7e-06 Score=75.00 Aligned_cols=131 Identities=16% Similarity=0.078 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++..+|..+...|++++|...++++.+..+. ....+. .+ ...+...|++++|..+++++....+ +
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~---~~-a~~~~~~~~~~~A~~~~~~~~~~~~-----~--- 67 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWY---NL-GNAYYKQGDYDEAIEYYQKALELDP-----R--- 67 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHH---HH-HHHHHHHTCHHHHHHHHHHHHHHCT-----T---
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc--chhHHH---HH-HHHHHHhcCHHHHHHHHHHHHHHCC-----C---
Confidence 35778999999999999999999999876542 111111 11 1566789999999999999987532 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
...+...++.++...|++++|++.+++++.... ....++..+|.++...|+++.|...+.+++.+
T Consensus 68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 246778899999999999999999999887422 12567888999999999999999999988765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-06 Score=84.23 Aligned_cols=147 Identities=10% Similarity=-0.068 Sum_probs=106.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHH
Q 002424 630 KLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEA 709 (924)
Q Consensus 630 ~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a 709 (924)
+||.++..+|++++|++.++.+...-|.... ..+.++ ..++..|+|++|...+++++.+.+ . ...+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~-----~~~~la-~~y~~~~~~~~A~~~~~~al~~~p-------~-~~~a 67 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSI-----KGFYFA-KLYYEAKEYDLAKKYICTYINVQE-------R-DPKA 67 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHT-----THHHHH-HHHHHTTCHHHHHHHHHHHHHHCT-------T-CHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHH-----HHHHHH-HHHHHcCCHHHHHHHHHHHHHhCC-------C-CHHH
Confidence 5788888899999999999977654432111 111222 678899999999999999998732 2 3688
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHH-HHHHHHHHHHhCCcHHHHH
Q 002424 710 SLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPY-ALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 710 ~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~-l~~AL~la~~~g~~~~~A~ 788 (924)
+..+|.++...|++++|+..+++++++. .....++..+|.++...|++..|... +.+|+.+.-. ...
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~------~~~ 135 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVELN------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG------SPA 135 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT------CHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC------CHH
Confidence 9999999999999999999999998852 22367889999999999999876654 5788877421 134
Q ss_pred HHHHHHHHHHHcCC
Q 002424 789 ATLTLAELWLSFGP 802 (924)
Q Consensus 789 al~~La~l~~~lG~ 802 (924)
+....+.++...|+
T Consensus 136 ~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 136 VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCc
Confidence 45556777766664
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.6e-06 Score=91.87 Aligned_cols=160 Identities=16% Similarity=0.050 Sum_probs=128.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++++|...+++++.+.+ . ...+++.+|.++...|++++|.+.+++++.. ++ ........
T Consensus 125 ~~~~~~g~~~~A~~~~~~al~~~P-------~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----~p-~~~~~~~~ 190 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDAWQLSN-------Q-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----DQ-DTRYQGLV 190 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTT-------S-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----GC-SHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCC-------c-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----hc-chHHHHHH
Confidence 577899999999999999998633 2 3578999999999999999999999988662 22 22344556
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
.+..+...|+...|+..+.+++.+.- ....++..||.++...|+. ++|+..+++++..--.. ..+.++
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P------~~~~~~~~la~~l~~~g~~--~~A~~~l~~~l~~~p~~----~~~~a~ 258 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP------EDAALATQLALQLHQVGRN--EEALELLFGHLRXDLTA----ADGQTR 258 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCTTG----GGGHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC------ccHHHHHHHHHHHHHcccH--HHHHHHHHHHHhccccc----ccchHH
Confidence 66667788888889999988887642 2246788899999999998 99999999998763222 346778
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
..|+.++.. .|+.++|+..+++++..
T Consensus 259 ~~l~~~~~~------~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 259 XTFQEILAA------LGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHH------HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH------cCCCCcHHHHHHHHHHH
Confidence 889999998 89999999999998864
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=5.6e-06 Score=77.75 Aligned_cols=105 Identities=10% Similarity=-0.012 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC-cH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL-DL 784 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~-~~ 784 (924)
.+.+..++|..+...|+|++|++.+++++.+.. ..+.++..+|.++...|+++.|+..+.+|+.+...... ..
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p------~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 80 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP------SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK 80 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH
Confidence 677888999999999999999999999998522 23678999999999999999999999999999876654 45
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
..+.++..+|.++..+|.. ++|+..++++|..
T Consensus 81 ~~a~~~~~lg~~~~~~~~~--~~A~~~~~kal~~ 112 (127)
T 4gcn_A 81 LIAKAMSRAGNAFQKQNDL--SLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhh
Confidence 6788999999999999998 9999999998753
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-05 Score=82.96 Aligned_cols=160 Identities=14% Similarity=0.053 Sum_probs=122.7
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHcccchhHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAAN----QFSEAAAVAHSLFCMCYKFNLQVENAS 748 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G----~~~eAl~~l~~aL~~~~~~gd~~~~a~ 748 (924)
..+...|++.+|..+++++... + ...+.++++.++.. | ++++|+++++++.. .+...
T Consensus 26 ~~~~~~~~~~~A~~~~~~a~~~----g------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--------~g~~~ 86 (212)
T 3rjv_A 26 DTWVSSGDYQKAEYWAQKAAAQ----G------DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--------AGSKS 86 (212)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHT----T------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--------TTCHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHc----C------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--------CCCHH
Confidence 4566789999999999998763 2 35788899999887 7 99999999999854 23467
Q ss_pred HHHHHHHHHHh----cCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHhHHH
Q 002424 749 VLLLLAEIHKK----SGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS----FGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 749 al~~la~i~~~----~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~----lG~~~~~~Al~lLe~aLp~vl 820 (924)
++..+|.+|.. .+++.+|+.++.+|+.. +.....+.+...||.++.. .++. ++|+..+++++..
T Consensus 87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~--~~A~~~~~~A~~~-- 158 (212)
T 3rjv_A 87 GEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDD--VKASEYFKGSSSL-- 158 (212)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCH--HHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCH--HHHHHHHHHHHHc--
Confidence 88899999987 88999999999887653 3333446788899999987 5555 9999999999654
Q ss_pred hhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 821 GHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 821 ~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
.|+. .+++.||.++.....-....++.+|+.++++|.+.
T Consensus 159 -~~~~----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 159 -SRTG----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp -SCTT----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred -CCCH----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 2442 37889999998631000134899999999999764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.1e-06 Score=100.19 Aligned_cols=155 Identities=14% Similarity=0.057 Sum_probs=100.9
Q ss_pred ccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHH
Q 002424 638 FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTL 717 (924)
Q Consensus 638 ~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll 717 (924)
.|++++|...++++.+..+.... .+. .+ +..+...|++++|...+++++.+.+ . ...++..+|.++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~--~~~---~l-g~~~~~~g~~~~A~~~~~~al~~~p-------~-~~~~~~~lg~~~ 67 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFV--AWL---ML-ADAELGMGDTTAGEMAVQRGLALHP-------G-HPEAVARLGRVR 67 (568)
T ss_dssp -------------------CCHH--HHH---HH-HHHHHHHTCHHHHHHHHHHHHTTST-------T-CHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHH--HHH---HH-HHHHHHcCCHHHHHHHHHHHHHhCC-------C-CHHHHHHHHHHH
Confidence 47888999988888876553211 111 11 1566788999999999999888522 1 357788899999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Q 002424 718 LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELW 797 (924)
Q Consensus 718 ~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~ 797 (924)
...|++++|++.+++++.... ....++..+|.++...|++++|+..+.+++.+.-. ...++..+|.++
T Consensus 68 ~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~ 135 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDAAP------EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE------EPYITAQLLNWR 135 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHH
Confidence 999999999999998887522 22668888999999999999999999888877431 135677888888
Q ss_pred HHc---CCChHHHHHHHHHHHHhHHH
Q 002424 798 LSF---GPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 798 ~~l---G~~~~~~Al~lLe~aLp~vl 820 (924)
..+ |+. ++|...+++++..--
T Consensus 136 ~~~~~~g~~--~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 136 RRLCDWRAL--DVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHTTCCTTH--HHHHHHHHHHHHHTC
T ss_pred HHhhccccH--HHHHHHHHHHHhcCC
Confidence 888 776 889999988876643
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.30 E-value=7.8e-06 Score=74.66 Aligned_cols=131 Identities=18% Similarity=0.138 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
++.+.++.++...|++++|+..+++++.... ....++..+|.++...|+++.|+..+.+++..... ..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~ 69 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SA 69 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC------cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------ch
Confidence 4577889999999999999999999887421 23567888999999999999999999998876421 23
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 788 SATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 788 ~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
.+...+|.++...|+. ++|+.++++++..... ...++..+|.++.. .|++++|+.++++++..
T Consensus 70 ~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~------~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDY--DEAIEYYQKALELDPR------SAEAWYNLGNAYYK------QGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHTTTCH--HHHHHHHHHHHHHCTT------CHHHHHHHHHHHHT------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCH--HHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH------HccHHHHHHHHHHHHcc
Confidence 5667899999999998 9999999999865321 24577889999998 89999999999998764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1e-05 Score=77.64 Aligned_cols=142 Identities=10% Similarity=-0.005 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
..+..+..+|..+...|++++|+..+++++.... ....++..+|.++...|++..|+..+.+++.+...
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----- 79 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNP------SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK----- 79 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----
Confidence 3678889999999999999999999999988532 23678899999999999999999999999987421
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
...+...+|.++..+|+. ++|+..+++++...- .+ ..+.....++..+.. .|++++|+..++++...
T Consensus 80 -~~~~~~~~a~~~~~~~~~--~~A~~~~~~a~~~~p--~~--~~~~~~~~~~~~~~~------~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 80 -YIKGYYRRAASNMALGKF--RAALRDYETVVKVKP--HD--KDAKMKYQECNKIVK------QKAFERAIAGDEHKRSV 146 (166)
T ss_dssp -CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHST--TC--HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHhccH--HHHHHHHHHHHHhCC--CC--HHHHHHHHHHHHHHH------HHHHHHHHHcccchHHH
Confidence 246788899999999998 999999999986532 22 233344555555776 78899999999998888
Q ss_pred HHhhcC
Q 002424 865 LQVLED 870 (924)
Q Consensus 865 f~~l~~ 870 (924)
+..+..
T Consensus 147 ~~~~~~ 152 (166)
T 1a17_A 147 VDSLDI 152 (166)
T ss_dssp HHHCCC
T ss_pred hcccch
Confidence 876554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.25 E-value=2e-05 Score=80.81 Aligned_cols=181 Identities=13% Similarity=0.040 Sum_probs=136.7
Q ss_pred HHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcC-
Q 002424 683 LAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG- 761 (924)
Q Consensus 683 ~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G- 761 (924)
+|..+++++... + .+.+.+.+|.++...|++++|++++++++.. +...++..+|.++.. |
T Consensus 4 eA~~~~~~aa~~----g------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------g~~~a~~~lg~~y~~-~g 64 (212)
T 3rjv_A 4 EPGSQYQQQAEA----G------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--------GDGDALALLAQLKIR-NP 64 (212)
T ss_dssp CTTHHHHHHHHT----T------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHTTS-ST
T ss_pred hHHHHHHHHHHC----C------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHc-CC
Confidence 466677777652 2 3678999999999999999999999998762 346889999999998 7
Q ss_pred ---ChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHH
Q 002424 762 ---NAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS----FGPNHAKMASNLIQQALPLILGHGGLELRARAFIA 834 (924)
Q Consensus 762 ---~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~----lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~ 834 (924)
++.+|+.++.+|+.. + .+.+...||.++.. .++. ++|+..+++++. .|+....+.+++.
T Consensus 65 ~~~~~~~A~~~~~~A~~~----g----~~~a~~~Lg~~y~~g~g~~~d~--~~A~~~~~~A~~----~~~~~~~~~a~~~ 130 (212)
T 3rjv_A 65 QQADYPQARQLAEKAVEA----G----SKSGEIVLARVLVNRQAGATDV--AHAITLLQDAAR----DSESDAAVDAQML 130 (212)
T ss_dssp TSCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHTCGGGSSCCH--HHHHHHHHHHTS----STTSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCccCH--HHHHHHHHHHHH----cCCCcchHHHHHH
Confidence 899999999998542 3 34678889999876 5565 999999999865 3443345778999
Q ss_pred HHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHHH
Q 002424 835 EAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKL-G-----RLAEREEAAALFKEYV 905 (924)
Q Consensus 835 LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~l-G-----d~~~r~~aa~~f~~l~ 905 (924)
||.++.... +..+++.+|+.++++|.+. -+++ .+++.+|.+|... | +.+++..+.....+.|
T Consensus 131 Lg~~y~~g~--g~~~d~~~A~~~~~~A~~~---~~~~----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 131 LGLIYASGV--HGPEDDVKASEYFKGSSSL---SRTG----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHTS--SSSCCHHHHHHHHHHHHHT---SCTT----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC--CCCCCHHHHHHHHHHHHHc---CCCH----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999998732 2357899999999999764 1232 3688999999764 4 6777666555544443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.24 E-value=5.7e-06 Score=83.62 Aligned_cols=129 Identities=10% Similarity=-0.031 Sum_probs=108.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++.+|...++++.. + ...+...+|.++...|++++|++.+++++... .....++..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~---------~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~ 76 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAVQD---------P--HSRICFNIGCMYTILKNMTEAEKAFTRSINRD------KHLAVAYFQ 76 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTSSS---------C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHcC---------C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------ccchHHHHH
Confidence 567789999999999987732 1 35789999999999999999999999998852 223678999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhC----------CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLN----------LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g----------~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
+|.++...|+++.|+..+.+++.+..... .....+.++..+|.++..+|+. ++|+..++.++...-
T Consensus 77 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW--KKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTCC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH--HHHHHHHHHHHHcCc
Confidence 99999999999999999999999765544 4445567889999999999998 999999999987644
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.23 E-value=8.4e-06 Score=76.53 Aligned_cols=106 Identities=8% Similarity=-0.020 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh-CC
Q 002424 746 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH-GG 824 (924)
Q Consensus 746 ~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~-gd 824 (924)
.+.++..+|.++.+.|++++|+.++.+|+.+.- ..+.++..+|.++..+|+. ++|+..++.++.+-... .+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p------~~~~~~~nlg~~~~~~~~~--~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP------SNITFYNNKAAVYFEEKKF--AECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHhHHHHHHHhhhH--HHHHHHHHHHHHhCcccchh
Confidence 366788999999999999999999999998742 2356788999999999998 99999999999987665 56
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 825 LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 825 ~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
....|.++..+|.++.+ .|++.+|+.++++|+...
T Consensus 79 ~~~~a~~~~~lg~~~~~------~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQK------QNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHhhC
Confidence 77889999999999999 899999999999998754
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.7e-06 Score=83.20 Aligned_cols=159 Identities=18% Similarity=0.119 Sum_probs=118.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++++|...+++++.+.+ . ...++..+|.++...|++++|+..+++++... +. ......
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~P-------~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-----p~--~~~~~~ 78 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDELQ-------S-RGDVKLAKADCLLETKQFELAQELLATIPLEY-----QD--NSYKSL 78 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHHH-------T-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-----CC--HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-------C-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-----CC--hHHHHH
Confidence 567889999999999999988643 1 46889999999999999999999999886531 11 122333
Q ss_pred HHHHHH-hcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHH
Q 002424 753 LAEIHK-KSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARA 831 (924)
Q Consensus 753 la~i~~-~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a 831 (924)
++.+.. ..+....|+..+.+++.+.- ....++..+|.++...|+. ++|+..+++++..--.. ....+
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~P------~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p~~----~~~~a 146 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAANP------DNFELACELAVQYNQVGRD--EEALELLWNILKVNLGA----QDGEV 146 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTCTTT----TTTHH
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcccH--HHHHHHHHHHHHhCccc----ChHHH
Confidence 343322 22333457888888876532 1246778899999999998 99999999987652222 23457
Q ss_pred HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 832 FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 832 ~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
+..+|.++.. .|+.++|+..+++++..
T Consensus 147 ~~~l~~~~~~------~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 147 KKTFMDILSA------LGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHH------HCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------hCCCCcHHHHHHHHHHH
Confidence 7889999998 89999999999998753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.7e-06 Score=83.81 Aligned_cols=147 Identities=10% Similarity=0.016 Sum_probs=111.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHH
Q 002424 712 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATL 791 (924)
Q Consensus 712 ~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~ 791 (924)
.+|.++..+|++++|++.++.++. .......+...+|.+|...|+++.|+..+.+++.+.-. .+.++.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~------~~~a~~ 69 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTP------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER------DPKAHR 69 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSC------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcc------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence 356677788999999999888764 23444667788999999999999999999999987422 256788
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHH-HHHHHHHHHHhhcC
Q 002424 792 TLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLD-PLRQASEELQVLED 870 (924)
Q Consensus 792 ~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~-~L~~A~~~f~~l~~ 870 (924)
.+|.++..+|+. ++|+..+++++..-- ....+++.+|.++.. .|+..+|.. ++++|++..-
T Consensus 70 ~lg~~~~~~~~~--~~A~~~~~~al~~~p------~~~~~~~~la~~~~~------~~~~~~aa~~~~~~al~l~P---- 131 (150)
T 4ga2_A 70 FLGLLYELEENT--DKAVECYRRSVELNP------TQKDLVLKIAELLCK------NDVTDGRAKYWVERAAKLFP---- 131 (150)
T ss_dssp HHHHHHHHTTCH--HHHHHHHHHHHHHCT------TCHHHHHHHHHHHHH------HCSSSSHHHHHHHHHHHHST----
T ss_pred HHHHHHHHcCch--HHHHHHHHHHHHhCC------CCHHHHHHHHHHHHH------cCChHHHHHHHHHHHHHhCc----
Confidence 899999999998 999999999986522 124578899999998 788776554 5789987642
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 002424 871 HELAAEAFYLIAIVFDKLGR 890 (924)
Q Consensus 871 ~~~~~~vl~~lA~l~~~lGd 890 (924)
.-..++..++.++...|+
T Consensus 132 --~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 132 --GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp --TCHHHHHHHHHHHHTCCC
T ss_pred --CCHHHHHHHHHHHHHhCc
Confidence 234577788888888775
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.5e-06 Score=90.66 Aligned_cols=193 Identities=10% Similarity=-0.060 Sum_probs=150.4
Q ss_pred HcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHHHccc-c-----
Q 002424 677 HRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRH-------ARTLLAANQFSEAAAVAHSLFCMCYKFNL-Q----- 743 (924)
Q Consensus 677 ~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~-------a~ll~~~G~~~eAl~~l~~aL~~~~~~gd-~----- 743 (924)
..+++.+|.+.|.++..+ ||. ...+++.+ +.++.+.+++.+++..+...+.+....-. .
T Consensus 18 ~~~d~~~A~~~F~~a~~~-------dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY-------DES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH-------CTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred cCCCHHHHHHHHHHHHHh-------Chh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 689999999999999997 333 56778878 89999999999999988887763322110 0
Q ss_pred ---------hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 002424 744 ---------VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQ 814 (924)
Q Consensus 744 ---------~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~ 814 (924)
...-++.+..|.++...|+++.|...+.+.+. +.+... +...+|.++...|+. ++|+.+++.
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~--~~~~~a~l~~~~~r~--~dA~~~l~~ 160 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-----AGSEHL--VAWMKAVVYGAAERW--TDVIDQVKS 160 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHH--HHHHHHHHHHHTTCH--HHHHHHHTT
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchH--HHHHHHHHHHHcCCH--HHHHHHHHH
Confidence 12356788899999999999999999876654 223333 677899999999998 999999985
Q ss_pred HHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHhcCCHHH
Q 002424 815 ALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLED-HELAAEAFYLIAIVFDKLGRLAE 893 (924)
Q Consensus 815 aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~-~~~~~~vl~~lA~l~~~lGd~~~ 893 (924)
+. ...+....+.+++.||.++.. .|++++|+.+|++|.. -.. |....++.+.+|.++..+|+.++
T Consensus 161 a~----~~~d~~~~~~a~~~LG~al~~------LG~~~eAl~~l~~a~~----g~~~P~~~~da~~~~glaL~~lGr~de 226 (282)
T 4f3v_A 161 AG----KWPDKFLAGAAGVAHGVAAAN------LALFTEAERRLTEAND----SPAGEACARAIAWYLAMARRSQGNESA 226 (282)
T ss_dssp GG----GCSCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHT----STTTTTTHHHHHHHHHHHHHHHTCHHH
T ss_pred hh----ccCCcccHHHHHHHHHHHHHH------CCCHHHHHHHHHHHhc----CCCCccccHHHHHHHHHHHHHcCCHHH
Confidence 53 334666778899999999999 9999999999999973 122 44477899999999999999988
Q ss_pred HHHHHHH
Q 002424 894 REEAAAL 900 (924)
Q Consensus 894 r~~aa~~ 900 (924)
+......
T Consensus 227 A~~~l~~ 233 (282)
T 4f3v_A 227 AVALLEW 233 (282)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6654433
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-05 Score=75.68 Aligned_cols=117 Identities=11% Similarity=0.006 Sum_probs=95.5
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
||. .+++...+|..+...|+|++|++.+++++... .....++..+|.++...|++..|+..+.+|+.+-..
T Consensus 9 nP~-~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-- 79 (126)
T 4gco_A 9 NPE-LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-- 79 (126)
T ss_dssp CHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred CHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh--
Confidence 665 67889999999999999999999999998852 233678999999999999999999999999987321
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhh
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCL 839 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~ 839 (924)
...++..+|.++..+|+. ++|+..+++++..- -++ ..++..|++|.
T Consensus 80 ----~~~a~~~lg~~~~~~~~~--~~A~~~~~~al~l~--P~~----~~a~~~l~~~l 125 (126)
T 4gco_A 80 ----FIKGYIRKAACLVAMREW--SKAQRAYEDALQVD--PSN----EEAREGVRNCL 125 (126)
T ss_dssp ----CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC--TTC----HHHHHHHHHHC
T ss_pred ----hhHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHC--cCC----HHHHHHHHHhc
Confidence 246788999999999998 99999999998752 222 23556666654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=5.8e-05 Score=69.68 Aligned_cols=119 Identities=11% Similarity=-0.039 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+..+.++|..+...|+|++|...++++.+..|... ..+. .++ ..++..|++++|...+++++.+.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~---~~a-~~~~~~~~~~~A~~~~~~al~~~p------- 69 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA--RGYS---NRA-AALAKLMSFPEAIADCNKAIEKDP------- 69 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH---HHH-HHHHHTTCHHHHHHHHHHHHHHCT-------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh--HHHH---HHH-HHHHHhcCHHHHHHHHHHHHHhCC-------
Confidence 345667777777777777777777777776654321 1111 111 455677777777777777776522
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEI 756 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i 756 (924)
. ...+++.+|.++...|++++|++.+++++......++......++..++.+
T Consensus 70 ~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 70 N-FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 1 245677777777777777777777777777654433333334444444433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.2e-05 Score=88.14 Aligned_cols=209 Identities=16% Similarity=0.089 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcC---CHHHHHHHHHHHhhhhhccCCCC
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG---HLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G---~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
.+..+||..+...|+++++....+................+. ..+...| ++.+|...++++... ++.
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg-----~~~~~~g~~~~~~~A~~~~~~aa~~----g~~- 211 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELA-----TVYQKKQQPEQQAELLKQMEAGVSR----GTV- 211 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHH-----HHHHHTTCHHHHHHHHHHHHHHHHT----TCS-
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHH-----HHHHHcCCcccHHHHHHHHHHHHHC----CCH-
Confidence 567888999988887777766644433332221122112222 4556699 999999999999874 211
Q ss_pred cchHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH-H--HhcCChhhhHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAA----NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEI-H--KKSGNAVLGIPYALASLS 775 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~----G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i-~--~~~G~~~~Al~~l~~AL~ 775 (924)
.+...++++.++... +++++|+++++++. .+...++..+|.+ + ...|++.+|+.++.+|+.
T Consensus 212 ---~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 212 ---TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp ---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 345568888888555 79999999999874 3446788889998 5 679999999999998874
Q ss_pred HHHHhCCcHHHHHHHHHHHHHHHHcC-----CChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 002424 776 FCQLLNLDLLKASATLTLAELWLSFG-----PNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQN 850 (924)
Q Consensus 776 la~~~g~~~~~A~al~~La~l~~~lG-----~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~ 850 (924)
. | .+.+...||.++. .| +. ++|+..++++. .|+ +.+++.||.++... .+...+
T Consensus 280 ~----g----~~~A~~~Lg~~y~-~G~g~~~d~--~~A~~~~~~Aa-----~g~----~~A~~~Lg~~y~~G--~g~~~d 337 (452)
T 3e4b_A 280 A----D----QPRAELLLGKLYY-EGKWVPADA--KAAEAHFEKAV-----GRE----VAADYYLGQIYRRG--YLGKVY 337 (452)
T ss_dssp T----T----CHHHHHHHHHHHH-HCSSSCCCH--HHHHHHHHTTT-----TTC----HHHHHHHHHHHHTT--TTSSCC
T ss_pred C----C----CHHHHHHHHHHHH-cCCCCCCCH--HHHHHHHHHHh-----CCC----HHHHHHHHHHHHCC--CCCCcC
Confidence 3 3 3567888999987 67 54 99999999997 444 46888999999873 223568
Q ss_pred hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 002424 851 PEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFD 886 (924)
Q Consensus 851 ~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~ 886 (924)
+.+|+.++++|.+ .++ .++.+.+|.+|.
T Consensus 338 ~~~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 338 PQKALDHLLTAAR----NGQ----NSADFAIAQLFS 365 (452)
T ss_dssp HHHHHHHHHHHHT----TTC----TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----hCh----HHHHHHHHHHHH
Confidence 9999999999875 222 345556666665
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.9e-05 Score=72.99 Aligned_cols=120 Identities=11% Similarity=-0.092 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.++.+..+|..+...|+|++|++.+++++.... ....++..+|.++...|+++.|+..+.+++.+.-.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------ 70 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN------ 70 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------
Confidence 567889999999999999999999999988532 23678999999999999999999999999987422
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhh
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCL 839 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~ 839 (924)
...++..+|.++..+|+. ++|+..+++++...-..++......+...+++|.
T Consensus 71 ~~~~~~~lg~~~~~~~~~--~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 71 FVRAYIRKATAQIAVKEY--ASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 256788899999999998 9999999999988755444334444555555544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0001 Score=72.26 Aligned_cols=115 Identities=16% Similarity=-0.015 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc-----hH-HHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK-----SR-ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASS 697 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~-----~~-~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~ 697 (924)
.+..+.++|..+...|+|++|+..++.|++.-|...+ .. .........+..+...|+|++|...+++++.+|..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4566789999999999999999999999998886321 11 11112122226778999999999999999998554
Q ss_pred cCCCCcchHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 002424 698 VTGVDMDLKTEAS----LRHARTLLAANQFSEAAAVAHSLFCMCYK 739 (924)
Q Consensus 698 ~~~~D~~~~a~a~----~~~a~ll~~~G~~~eAl~~l~~aL~~~~~ 739 (924)
.+..||. ...++ +++|.++..+|++++|+..+++++++..+
T Consensus 90 ~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 90 RGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 4444543 56777 99999999999999999999999997664
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.07 E-value=3.9e-05 Score=75.27 Aligned_cols=114 Identities=17% Similarity=0.035 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc------cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN------LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~g------d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
.+......|..+...|+|++|++.+++++++..... .....+.++.++|.++...|++++|+..+.+||.+..+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 567789999999999999999999999999866421 11123559999999999999999999999999998422
Q ss_pred -hCCcHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 780 -LNLDLLKASAT----LTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 780 -~g~~~~~A~al----~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
.-...-.+.++ .++|.++..+|+. ++|+..+++++.+.-+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~--eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRG--AEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCH--HHHHHHHHHHHhcCCC
Confidence 22233445666 8999999999998 9999999999988643
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.9e-05 Score=70.67 Aligned_cols=100 Identities=14% Similarity=0.052 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
+.+.++.++|..+..+|+|++|+..++++.+.-|... ..+. .++ ..++..|++.+|...+++++.+ |
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~---~~~-~~~~~~~~~~~A~~~~~~al~~-------~ 77 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA--ILYS---NRA-ACLTKLMEFQRALDDCDTCIRL-------D 77 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH---HHH-HHHHHTTCHHHHHHHHHHHHHH-------C
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHH---HHh-hHHHhhccHHHHHHHHHHHHHh-------h
Confidence 4577888999999999999999999999988765321 1111 111 5677899999999999999886 2
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
|. ...+++++|.++..+|++++|++.+++++++
T Consensus 78 p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 78 SK-FIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hh-hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 22 3578889999999999999999999998875
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.06 E-value=5.6e-05 Score=83.47 Aligned_cols=138 Identities=16% Similarity=0.078 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc---h------HH-HHHHHhhHHHHHHHcCCHHHHHHHHHHHh
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK---S------RI-LLLKLQLLHERSLHRGHLKLAQKVCDELG 692 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~---~------~~-~~l~l~l~~~~al~~G~~~~A~~~l~~ll 692 (924)
..+.++.++|..+...|+|++|...++++....+.... . .. ..+..+++ ..++..|+|.+|...+++++
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla-~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA-MCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 45678899999999999999999999999998876531 0 01 11112222 68889999999999999999
Q ss_pred hhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhh-HHHHH
Q 002424 693 VMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLG-IPYAL 771 (924)
Q Consensus 693 ~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~A-l~~l~ 771 (924)
.+.+ . ...+++++|.++...|++++|+..+++++.+.. ....++..++.++...|++.+| ...+.
T Consensus 224 ~~~p-------~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P------~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 289 (336)
T 1p5q_A 224 ELDS-------N-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP------NNKAAKTQLAVCQQRIRRQLAREKKLYA 289 (336)
T ss_dssp HHCT-------T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS------SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCC-------C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9732 2 467899999999999999999999999988522 2256888999999999999888 44444
Q ss_pred HHHH
Q 002424 772 ASLS 775 (924)
Q Consensus 772 ~AL~ 775 (924)
+.+.
T Consensus 290 ~~~~ 293 (336)
T 1p5q_A 290 NMFE 293 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.05 E-value=8.3e-05 Score=87.01 Aligned_cols=206 Identities=9% Similarity=-0.033 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHH-HhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHH
Q 002424 626 LAHVKLIQHLAV-------FKGYK-------EAFSALKIAEE-KFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDE 690 (924)
Q Consensus 626 ~a~~~La~~~a~-------~G~y~-------eA~~~L~~a~~-~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ 690 (924)
.+..++|..+.. .|+++ +|...+++|.+ ..|. ...+|.... ......|++++|..++++
T Consensus 273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~--~~~l~~~~~----~~~~~~g~~~~A~~~~~~ 346 (530)
T 2ooe_A 273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK--NMLLYFAYA----DYEESRMKYEKVHSIYNR 346 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS--CHHHHHHHH----HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc--cHHHHHHHH----HHHHhcCCHHHHHHHHHH
Confidence 556777777765 79987 89999998886 4442 222333221 455678999999999999
Q ss_pred HhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH-HHhcCChhhhHHH
Q 002424 691 LGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEI-HKKSGNAVLGIPY 769 (924)
Q Consensus 691 ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i-~~~~G~~~~Al~~ 769 (924)
++.+. +.+ ...++...+.++.+.|++++|.+.+++++.... ....+....+.+ +...|++++|+..
T Consensus 347 al~~~----p~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~------~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 347 LLAIE----DID---PTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR------TRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp HHHSS----SSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT------CCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HhCcc----ccC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC------CchHHHHHHHHHHHHHcCChhHHHHH
Confidence 98852 122 345888899999999999999999999986322 112333344444 3468999999999
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCC
Q 002424 770 ALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQ 849 (924)
Q Consensus 770 l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g 849 (924)
+.+++...- . ...+...++.+....|+. ++|+.++++++...- .++......+....+.... .|
T Consensus 414 ~e~al~~~p---~---~~~~~~~~~~~~~~~g~~--~~Ar~~~~~al~~~~--~~~~~~~~lw~~~~~~e~~------~G 477 (530)
T 2ooe_A 414 FELGLKKYG---D---IPEYVLAYIDYLSHLNED--NNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESN------IG 477 (530)
T ss_dssp HHHHHHHHT---T---CHHHHHHHHHHHTTTTCH--HHHHHHHHHHHHSCC--SCGGGCHHHHHHHHHHHHH------SS
T ss_pred HHHHHHHCC---C---CHHHHHHHHHHHHhCCCH--hhHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHH------cC
Confidence 999998752 1 135667889888889998 999999999975411 1222334455555555555 68
Q ss_pred ChHHHHHHHHHHHHHHH
Q 002424 850 NPEAVLDPLRQASEELQ 866 (924)
Q Consensus 850 ~~~~Al~~L~~A~~~f~ 866 (924)
+.+.+..+.++|.+.+-
T Consensus 478 ~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 478 DLASILKVEKRRFTAFR 494 (530)
T ss_dssp CHHHHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHHCc
Confidence 89999999999988885
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.9e-05 Score=75.41 Aligned_cols=108 Identities=12% Similarity=0.009 Sum_probs=92.0
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc------------chhHHHHHHHHHHHHHhcCChhhhHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL------------QVENASVLLLLAEIHKKSGNAVLGIPYA 770 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd------------~~~~a~al~~la~i~~~~G~~~~Al~~l 770 (924)
....+..+...|..+...|+|++|+..+++++..+..... ......++..+|.++...|++..|+..+
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3447888999999999999999999999999997654322 3445779999999999999999999999
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 771 LASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 771 ~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
.+|+.+.- ..+.++..+|.++..+|+. ++|+..+++++..
T Consensus 87 ~~al~~~p------~~~~a~~~~g~~~~~~g~~--~~A~~~~~~al~l 126 (162)
T 3rkv_A 87 SEVLKREE------TNEKALFRRAKARIAAWKL--DEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHST------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHHhcCC------cchHHHHHHHHHHHHHhcH--HHHHHHHHHHHhc
Confidence 99998832 2357888999999999998 9999999999877
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.03 E-value=9.4e-05 Score=72.02 Aligned_cols=101 Identities=7% Similarity=-0.098 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
+...++.++|..+...|+|++|...++++...-|.. ...|. .++ ..+...|+|++|...+++++.+.+ .
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~--~~~~~---~lg-~~~~~~g~~~~Ai~~~~~al~l~P----~- 102 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN--VDYIM---GLA-AIYQIKEQFQQAADLYAVAFALGK----N- 102 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH---HHH-HHHHHTTCHHHHHHHHHHHHHHSS----S-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHH---HHH-HHHHHHccHHHHHHHHHHHHhhCC----C-
Confidence 456788999999999999999999999999876632 22222 111 577889999999999999998733 1
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMC 737 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~ 737 (924)
...+++++|.++...|++++|++.+++++...
T Consensus 103 ---~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 103 ---DYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 24678899999999999999999999998864
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.00 E-value=6.8e-05 Score=72.72 Aligned_cols=105 Identities=24% Similarity=0.192 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc------------hH-HHHHHHhhHHHHHHHcCCHHHHHHHHH
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK------------SR-ILLLKLQLLHERSLHRGHLKLAQKVCD 689 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~------------~~-~~~l~l~l~~~~al~~G~~~~A~~~l~ 689 (924)
..+..+..+|..+...|+|++|+..++.+...++.... .. ...+..+++ ..++..|+|.+|...+.
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla-~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMS-QCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHH-HHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH-HHHHhcCcHHHHHHHHH
Confidence 35678899999999999999999999999988553211 00 011111222 56677888888888888
Q ss_pred HHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 690 ELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 690 ~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
+++.+ ||. ...+++++|.++...|++++|+..+++++.+
T Consensus 88 ~al~~-------~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 88 EVLKR-------EET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHH-------STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhc-------CCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 87775 222 3567778888888888888888888877774
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.00 E-value=6.9e-05 Score=72.98 Aligned_cols=114 Identities=11% Similarity=0.037 Sum_probs=94.1
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
||. ...+++.+|..+...|+|++|++.+++++... .....++..+|.++...|++++|+..+.+|+.+.-.
T Consensus 32 ~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-- 102 (151)
T 3gyz_A 32 PDD-MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-- 102 (151)
T ss_dssp CHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS--
T ss_pred CHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC--
Confidence 443 67889999999999999999999999998742 234678999999999999999999999999988532
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI 833 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~ 833 (924)
...++..+|.++..+|+. ++|+..+++++... ++...+.++-.
T Consensus 103 ----~~~~~~~lg~~~~~lg~~--~eA~~~~~~al~l~---~~~~~~~~A~~ 145 (151)
T 3gyz_A 103 ----DYTPVFHTGQCQLRLKAP--LKAKECFELVIQHS---NDEKLKIKAQS 145 (151)
T ss_dssp ----CCHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC---CCHHHHHHHHH
T ss_pred ----CcHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC---CCHHHHHHHHH
Confidence 235788999999999998 99999999998874 44444444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.8e-05 Score=76.34 Aligned_cols=113 Identities=18% Similarity=0.090 Sum_probs=92.3
Q ss_pred HHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhh
Q 002424 686 KVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVL 765 (924)
Q Consensus 686 ~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~ 765 (924)
..+++++.+ +|. ...+.+.+|..+...|+|++|+..+++++... .....++..+|.++...|+++.
T Consensus 8 ~~~~~al~~-------~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~ 73 (148)
T 2vgx_A 8 GTIAMLNEI-------SSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD------HYDSRFFLGLGACRQAMGQYDL 73 (148)
T ss_dssp CSHHHHTTC-------CHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHcC-------CHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC------cccHHHHHHHHHHHHHHhhHHH
Confidence 445556554 332 57888999999999999999999999998742 2236778899999999999999
Q ss_pred hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 766 GIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 766 Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
|+..+.+++.+.-. ...++..+|.++..+|+. ++|+..++.++...-
T Consensus 74 A~~~~~~al~l~p~------~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 74 AIHSYSYGAVMDIX------EPRFPFHAAECLLQXGEL--AEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCC------CchHHHHHHHHHHHcCCH--HHHHHHHHHHHHHCc
Confidence 99999999987532 235678899999999998 999999999987754
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.97 E-value=9.5e-05 Score=67.31 Aligned_cols=105 Identities=10% Similarity=-0.051 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh-CCcH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL-NLDL 784 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~-g~~~ 784 (924)
.+.+...+|.++...|++++|+..+++++.... ....++..+|.++...|++..|+..+.+++.+.... ....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDP------TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 467889999999999999999999999987532 236788999999999999999999999999998764 3444
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
....+...+|.++..+|+. ++|+..+++++..
T Consensus 77 ~~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~ 108 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKY--KDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHh
Confidence 4478899999999999998 9999999999874
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.97 E-value=9.4e-05 Score=71.85 Aligned_cols=109 Identities=13% Similarity=0.019 Sum_probs=94.1
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
+....+.++..+|.++...|+|++|++.+++++.... ....++..+|.++...|+++.|+..+.+++.+.-.
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-- 77 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP------ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-- 77 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--
Confidence 3445788999999999999999999999999998532 23678999999999999999999999999988532
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCC
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG 824 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd 824 (924)
...++..+|.++..+|+. ++|+..+++++...-...+
T Consensus 78 ----~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 78 ----YSKAWSRLGLARFDMADY--KGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp ----CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHSSSCC
T ss_pred ----CHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCchH
Confidence 257788999999999998 9999999999988766665
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00015 Score=65.82 Aligned_cols=123 Identities=15% Similarity=-0.016 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
......++..+|..+...|+|++|...++.+....+.. ...+. .++ ..+...|++.+|...+.++..+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~---~~a-~~~~~~~~~~~A~~~~~~~~~~~~---- 77 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN--AVYFC---NRA-AAYSKLGNYAGAVQDCERAICIDP---- 77 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH---HHH-HHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC--HHHHH---HHH-HHHHHhhchHHHHHHHHHHHhcCc----
Confidence 34556788899999999999999999999988875532 11111 111 567789999999999999988522
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCCh
Q 002424 701 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNA 763 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~ 763 (924)
+ ...+...+|.++...|++++|+..+++++.... ....++..+|.++...|++
T Consensus 78 -~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 78 -A---YSKAYGRMGLALSSLNKHVEAVAYYKKALELDP------DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHHTTC
T ss_pred -c---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc------cchHHHHHHHHHHHHHhcC
Confidence 1 256788999999999999999999998887522 1245677888888887765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.93 E-value=5.3e-05 Score=83.69 Aligned_cols=158 Identities=12% Similarity=0.079 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.+.++..+|.++...|+|++|+..+++++.......+.. ...+ .. ....
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~------------------~~~~-------~~------~~~~ 194 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS------------------NEEA-------QK------AQAL 194 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC------------------SHHH-------HH------HHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCC------------------hHHH-------HH------HHHH
Confidence 777888888888888888888888888877644332210 0000 01 1123
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
.+.++.++|.++..+|+. ++|+..+++++..-- ..+.+++.+|.++.. .|++++|+.++++|++..
T Consensus 195 ~~~~~~nla~~~~~~g~~--~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~------~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQAF--SAAIESCNKALELDS------NNEKGLSRRGEAHLA------VNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCT------TCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCC------CcHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHC
Confidence 456778899999999998 999999999987632 235789999999999 899999999999999874
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHhhhccCCC
Q 002424 866 QVLEDHELAAEAFYLIAIVFDKLGRLAEREE--AAALFKEYVLALENENRQ 914 (924)
Q Consensus 866 ~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~--aa~~f~~l~~~~~~~~~~ 914 (924)
- .-..++..++.++..+|+..+++. +...|..+......+.+.
T Consensus 261 P------~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 305 (336)
T 1p5q_A 261 P------NNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAE 305 (336)
T ss_dssp S------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred C------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 2 124688899999999999888644 666777766655444433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00017 Score=82.56 Aligned_cols=128 Identities=9% Similarity=-0.042 Sum_probs=102.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cc-cchhHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-FN-LQVENASVL 750 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~-~g-d~~~~a~al 750 (924)
..+...|+|++|..++++++.+...+-+.+-...+.++.+++.++..+|+|++|+.++++++..... .| +....+..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 4566899999999999999987654433333347889999999999999999999999999998876 33 445668899
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHHHh-CC-cHHHHHHHHHHHHHHHHc
Q 002424 751 LLLAEIHKKSGNAVLGIPYALASLSFCQLL-NL-DLLKASATLTLAELWLSF 800 (924)
Q Consensus 751 ~~la~i~~~~G~~~~Al~~l~~AL~la~~~-g~-~~~~A~al~~La~l~~~l 800 (924)
..+|.+|...|++++|+.++.+|+++-... |. ....+.++..|+.+...+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998544 43 345556666676665543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=7.6e-05 Score=74.95 Aligned_cols=130 Identities=12% Similarity=-0.040 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchH----------HH-HHHHhhHHHHHHHcCCHHHHHHHHHHH
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR----------IL-LLKLQLLHERSLHRGHLKLAQKVCDEL 691 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~----------~~-~l~l~l~~~~al~~G~~~~A~~~l~~l 691 (924)
..+..+.++|..+...|+|++|...++++....+...+.. +. .+...++ ..++..|+|.+|...+.++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA-TCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH-HHHHHhcCHHHHHHHHHHH
Confidence 3567788999999999999999999999998877644210 00 1111222 6778999999999999999
Q ss_pred hhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhH
Q 002424 692 GVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGI 767 (924)
Q Consensus 692 l~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al 767 (924)
+.+.+ . ...+++++|.++...|++++|++.+++++.... ....++..++.++...|+..++.
T Consensus 115 l~~~p-------~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 115 LKIDK-------N-NVKALYKLGVANMYFGFLEEAKENLYKAASLNP------NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHST-------T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHhCc-------c-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC------CcHHHHHHHHHHHHHHHHHHHHH
Confidence 98622 1 357889999999999999999999999987522 22556777788887777776665
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.92 E-value=9.3e-05 Score=71.87 Aligned_cols=102 Identities=11% Similarity=-0.082 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
..+.++..+|..+...|+|++|+..++++.+..+... ..+. .++ ..++..|++++|...+++++.+.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~---~l~-~~~~~~g~~~~A~~~~~~al~~~p------ 76 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP--IYLS---NRA-AAYSASGQHEKAAEDAELATVVDP------ 76 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHH---HHH-HHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH--HHHH---HHH-HHHHHccCHHHHHHHHHHHHHhCC------
Confidence 5567888899999999999999999998888765321 1111 111 567788999999999998888622
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 738 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~ 738 (924)
. ...+++++|.++...|++++|++.+++++....
T Consensus 77 -~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 77 -K-YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp -T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred -C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 2 357788889999999999999999998888654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0001 Score=67.09 Aligned_cols=106 Identities=9% Similarity=0.014 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh-CC
Q 002424 746 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH-GG 824 (924)
Q Consensus 746 ~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~-gd 824 (924)
.+.++..+|.++...|++..|+..+.+++.+... ...+...+|.++...|+. ++|+..+++++...... ++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~ 74 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDY--NKCRELCEKAIEVGRENRED 74 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHhccH--HHHHHHHHHHHhhccccchh
Confidence 3667889999999999999999999999887421 246778899999999998 99999999999987764 55
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 825 LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 825 ~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
....+.++..+|.++.. .|++.+|+.++++++...
T Consensus 75 ~~~~~~~~~~la~~~~~------~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFK------EEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH------hccHHHHHHHHHHHHHhC
Confidence 55668899999999999 899999999999999854
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=8.6e-05 Score=68.07 Aligned_cols=122 Identities=15% Similarity=0.016 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
......++..+|..+...|+|++|...++++.+..+.. ...+. .++ ..+...|++++|...++++..+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~---~la-~~~~~~~~~~~A~~~~~~a~~~~~---- 81 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD--AKLYS---NRA-ACYTKLLEFQLALKDCEECIQLEP---- 81 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC--HHHHH---HHH-HHHTTTTCHHHHHHHHHHHHHHCT----
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHH---HHH-HHHHHhccHHHHHHHHHHHHHhCC----
Confidence 34557788999999999999999999999988765532 11111 111 566789999999999999988632
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCC
Q 002424 701 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN 762 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~ 762 (924)
+ ...+...+|.++...|++++|++.+++++.... ....++..++.++...|+
T Consensus 82 -~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 82 -T---FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS------SCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG------GGTHHHHHHHHHHHHHTC
T ss_pred -C---chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC------CchHHHHHHHHHHHHhcC
Confidence 1 357788999999999999999999998887522 124466677777766553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0015 Score=82.92 Aligned_cols=261 Identities=13% Similarity=0.071 Sum_probs=153.8
Q ss_pred HHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhh
Q 002424 591 RATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQL 670 (924)
Q Consensus 591 ~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l 670 (924)
...+|..+|........-.-+..+|.+.. ....+.++|..+...|+|++|.+.|..|.+.-+...-.. .+.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKAd----D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt--~La--- 1174 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD----DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--ELI--- 1174 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH--HHH---
Confidence 36789999988888775555566665532 235667889999999999999999998886542211000 011
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHH
Q 002424 671 LHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVL 750 (924)
Q Consensus 671 ~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al 750 (924)
..+...+++.+...+. . ++ ........|..+...|+|++|...+..+ .-+
T Consensus 1175 --faYAKl~rleele~fI----~--------~~--n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------------~ny 1224 (1630)
T 1xi4_A 1175 --FALAKTNRLAELEEFI----N--------GP--NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNF 1224 (1630)
T ss_pred --HHHHhhcCHHHHHHHH----h--------CC--CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------------hHH
Confidence 2222336665433332 1 00 1123445777777777777777777654 234
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHH------------------HHHHhCCcH-HHHHHHHHHHHHHHHcCCChHHHHHHH
Q 002424 751 LLLAEIHKKSGNAVLGIPYALASLS------------------FCQLLNLDL-LKASATLTLAELWLSFGPNHAKMASNL 811 (924)
Q Consensus 751 ~~la~i~~~~G~~~~Al~~l~~AL~------------------la~~~g~~~-~~A~al~~La~l~~~lG~~~~~~Al~l 811 (924)
..+|.++.+.|+++.|++.+.+|.. +|+..|... ..+.-+-.++..+...|.. ++|+.+
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~f--eEAI~L 1302 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYF--EELITM 1302 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCH--HHHHHH
Confidence 4456666666666666666654422 222222210 1223344677788888886 999999
Q ss_pred HHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHH-----HHHHHHHHHHHHHH
Q 002424 812 IQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHE-----LAAEAFYLIAIVFD 886 (924)
Q Consensus 812 Le~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~-----~~~~vl~~lA~l~~ 886 (924)
++.+|..=+.| .-.+..||.++..- + .+...+++.+ .+.+++-+. .+++..-.+..+|+
T Consensus 1303 lE~aL~LeraH------~gmftELaiLyaKy---~-peklmEhlk~------f~~rini~k~~r~~e~~~lW~elv~LY~ 1366 (1630)
T 1xi4_A 1303 LEAALGLERAH------MGMFTELAILYSKF---K-PQKMREHLEL------FWSRVNIPKVLRAAEQAHLWAELVFLYD 1366 (1630)
T ss_pred HHHHhccChhH------hHHHHHHHHHHHhC---C-HHHHHHHHHH------HHHhcccchHhHHHHHHHHHHHHHHHHH
Confidence 99887653332 22444556555441 1 1222223222 334555455 67777889999999
Q ss_pred hcCCHHHHH-------HHHHHHHHHHHhh
Q 002424 887 KLGRLAERE-------EAAALFKEYVLAL 908 (924)
Q Consensus 887 ~lGd~~~r~-------~aa~~f~~l~~~~ 908 (924)
.-|+.+.|- +-|+...++..-+
T Consensus 1367 ~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i 1395 (1630)
T 1xi4_A 1367 KYEEYDNAIITMMNHPTDAWKEGQFKDII 1395 (1630)
T ss_pred hcccHHHHHHHHHhccHhhhhhHHHHHHh
Confidence 999999877 4555555554433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00052 Score=86.97 Aligned_cols=207 Identities=14% Similarity=0.076 Sum_probs=116.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHH
Q 002424 631 LIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 710 (924)
Q Consensus 631 La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~ 710 (924)
+|..+...|.|+||..+++.+... . . +.+ ......|+|++|.+++++.. ...++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~-~-------~--A~~---VLie~i~nldrAiE~Aervn-------------~p~vW 1108 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVN-T-------S--AVQ---VLIEHIGNLDRAYEFAERCN-------------EPAVW 1108 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCH-H-------H--HHH---HHHHHHhhHHHHHHHHHhcC-------------CHHHH
Confidence 477777889999999888865311 0 0 000 11115556666665555431 23556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH------
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL------ 784 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~------ 784 (924)
+.+|..+...|++.+|++.+.++ ++ ......+|.++.+.|+++.|+..+..|....+....+.
T Consensus 1109 sqLAKAql~~G~~kEAIdsYiKA-------dD----~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1109 SQLAKAQLQKGMVKEAIDSYIKA-------DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhc-------CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 66666666666666666666543 11 33444456666666666666666654432221100000
Q ss_pred ------HH---------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCC
Q 002424 785 ------LK---------ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQ 849 (924)
Q Consensus 785 ------~~---------A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g 849 (924)
.+ ......+|..+...|.. ++|..++..+ ..|..+|+|+.. .|
T Consensus 1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~Y--eeA~~~Y~kA--------------~ny~rLA~tLvk------Lg 1235 (1630)
T 1xi4_A 1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMY--DAAKLLYNNV--------------SNFGRLASTLVH------LG 1235 (1630)
T ss_pred HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCH--HHHHHHHHhh--------------hHHHHHHHHHHH------hC
Confidence 00 01234577777777776 7787777774 477778888888 78
Q ss_pred ChHHHHHHHHHHHHHHH------------------hhc-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 850 NPEAVLDPLRQASEELQ------------------VLE-DHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 850 ~~~~Al~~L~~A~~~f~------------------~l~-~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
++++|++..++|...-. ..+ ......+-+..++..|...|..+++-.
T Consensus 1236 e~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~ 1301 (1630)
T 1xi4_A 1236 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELIT 1301 (1630)
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888877743211 000 000122344466667777777777655
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00044 Score=63.35 Aligned_cols=102 Identities=13% Similarity=0.021 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
++.++|..+...|+|++|...++.+....|.......... .+ +..++..|++++|...+++++...+ +....
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~--~l-g~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~ 75 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALY--WL-GESYYATRNFQLAEAQFRDLVSRYP-----THDKA 75 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHH--HH-HHHHHHTTCHHHHHHHHHHHHHHCT-----TSTTH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHH--HH-HHHHHHhccHHHHHHHHHHHHHHCC-----CCccc
Confidence 4567888888999999999999988888775442111111 11 1567788999999999998888643 21124
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
..+.+.+|.++...|++++|...+++++..
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 678888999999999999999999888774
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00012 Score=83.76 Aligned_cols=106 Identities=14% Similarity=0.081 Sum_probs=90.0
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cc-cchhHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-FN-LQVENASVLL 751 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~-~g-d~~~~a~al~ 751 (924)
.....|+|++|..++++++.+...+-+.+-...+.++.+++.++..+|+|++|..++++++++..+ .| +....+..++
T Consensus 307 ~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 307 RAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 445679999999999999998765433333347889999999999999999999999999998776 34 3456688999
Q ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 752 LLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 752 ~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
++|.+|...|++++|...+.+|+++...
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999854
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00027 Score=63.43 Aligned_cols=118 Identities=17% Similarity=0.075 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
...++..+|..+...|+|++|...++++....+.. ...+. .++ ..+...|++++|...++++..+.+ .
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~---~la-~~~~~~~~~~~A~~~~~~~~~~~~----~-- 75 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWY---NLG-NAYYKQGDYDEAIEYYQKALELDP----N-- 75 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH---HHH-HHHHHTTCHHHHHHHHHHHHHHCT----T--
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc--HHHHH---HHH-HHHHHhCCHHHHHHHHHHHHHhCC----c--
Confidence 45778889999999999999999999988775522 11111 111 566788999999999999887522 1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcC
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG 761 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G 761 (924)
...+...++.++...|++++|...+++++.... ....++..+|.++...|
T Consensus 76 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 76 --NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------NNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHC
T ss_pred --cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHhcc
Confidence 246778889999999999999999998877421 22445666666665543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00074 Score=63.92 Aligned_cols=102 Identities=13% Similarity=-0.055 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
+...++.++|..+...|+|++|...++.+...-|.. ...|. .++ ..+...|++++|...+++++.+.+ .
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~---~lg-~~~~~~g~~~~A~~~~~~al~~~p----~- 84 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--ARYFL---GLG-ACRQSLGLYEQALQSYSYGALMDI----N- 84 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH---HHH-HHHHHTTCHHHHHHHHHHHHHHCT----T-
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc--HHHHH---HHH-HHHHHHhhHHHHHHHHHHHHhcCC----C-
Confidence 456778899999999999999999999998876532 22222 111 577899999999999999998733 1
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 738 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~ 738 (924)
...+.+.+|.++...|++++|++.++.++....
T Consensus 85 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 85 ---EPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp ---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 246788999999999999999999999998765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0003 Score=80.51 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhc-cCchHHHHHH-HhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLS-VSKSRILLLK-LQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~-~~~~~~~~l~-l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
...+....+..+|+|++|...+++++++... ++..+...+. ++.++..+..+|+|++|+.++++++.+...+-+.+-.
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 3344444566899999999999999987544 3444433332 3444478889999999999999999987665444444
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cccc-hhHHHHHHHHHHHHHh
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-FNLQ-VENASVLLLLAEIHKK 759 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~-~gd~-~~~a~al~~la~i~~~ 759 (924)
..+..++++|.++..+|++++|+.++++++++... .|.. ...+.++..+++++..
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999998775 4544 3456677777777654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0036 Score=70.40 Aligned_cols=210 Identities=13% Similarity=0.058 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH-HHHhhHHHHHH-HcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL-LKLQLLHERSL-HRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~-l~l~l~~~~al-~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+...||..+..+|++++-..++....+.|...+.++..- ++ ++. .... .-|..+.=.+++.....-+.. . .-.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~-~l~-~~~~~~~~~~~~~~~~~~~~~~~a~~-~-~r~ 95 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVR-SLV-DMFLDMDAGTGIEVQLCKDCIEWAKQ-E-KRT 95 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHH-HHH-HHHTTSCCCHHHHHHHHHHHHHHHHH-T-TCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHH-HHH-HHHhcCCCcHHHHHHHHHHHHHHHHH-H-HHH
Confidence 6789999999999999999999998888887777665322 22 111 1111 134444444555555443221 1 011
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh-CC
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL-NL 782 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~-g~ 782 (924)
..+.....+++.++...|+|.+|++.+.+++..|....|......+.....++|...|+..++...+.+|...+... ..
T Consensus 96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~ 175 (394)
T 3txn_A 96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP 175 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence 12233556899999999999999999999999999988888889999999999999999999999999999998876 78
Q ss_pred cHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHhHHHhhCCHHH-HHHHHHHHHHhhhc
Q 002424 783 DLLKASATLTLAELWL-SFGPNHAKMASNLIQQALPLILGHGGLEL-RARAFIAEAKCLLS 841 (924)
Q Consensus 783 ~~~~A~al~~La~l~~-~lG~~~~~~Al~lLe~aLp~vl~~gd~~~-~A~a~~~LAr~~la 841 (924)
+...+.....-|.++. ..++. ..|...+-++....-+.|+... ....|..|+.+...
T Consensus 176 p~i~a~i~~~~Gi~~l~~~rdy--k~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~ 234 (394)
T 3txn_A 176 PKVQGALDLQSGILHAADERDF--KTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLG 234 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHhccCH--HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcC
Confidence 8899998887777776 67765 9999999999888877777543 33345555544443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00032 Score=67.46 Aligned_cols=102 Identities=18% Similarity=0.051 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
+...++.++|..+...|+|++|...++.+...-|.. ...|. .++ ..+...|++++|...+++++.+.+ .
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~---~lg-~~~~~~g~~~~A~~~~~~al~l~p----~- 87 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD--SRFFL---GLG-ACRQAMGQYDLAIHSYSYGAVMDI----X- 87 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH---HHH-HHHHHTTCHHHHHHHHHHHHHHST----T-
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc--HHHHH---HHH-HHHHHHhhHHHHHHHHHHHHhcCC----C-
Confidence 446778889999999999999999999988775532 22221 111 567789999999999999988633 1
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 738 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~ 738 (924)
...+++.+|.++...|++++|++.+++++....
T Consensus 88 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 88 ---EPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp ---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 246788899999999999999999999988654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00022 Score=79.93 Aligned_cols=130 Identities=12% Similarity=0.009 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccC-----------chHHHHHHHhhHHHHHHHcCCHHHHHHHHHHH
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS-----------KSRILLLKLQLLHERSLHRGHLKLAQKVCDEL 691 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~-----------~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~l 691 (924)
..+..+.++|..+...|+|++|+..++++.+..+... +.....+..+++ ..++..|+|++|...++++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla-~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG-ACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHH-HHHHhccCHHHHHHHHHHH
Confidence 3456688999999999999999999999998655421 111111112222 6778899999999999999
Q ss_pred hhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhH
Q 002424 692 GVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGI 767 (924)
Q Consensus 692 l~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al 767 (924)
+.+. |. ...+++++|.++..+|++++|++.+++++.+.. ....++..++.++...|+..++.
T Consensus 300 l~~~-------p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P------~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 300 LEID-------PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP------EDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTC-------TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhC-------ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 8852 22 467889999999999999999999999887532 12445666777776666665543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=8.6e-05 Score=74.57 Aligned_cols=143 Identities=14% Similarity=-0.004 Sum_probs=101.7
Q ss_pred HcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccch----------hH
Q 002424 677 HRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV----------EN 746 (924)
Q Consensus 677 ~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~----------~~ 746 (924)
..|++..|.+.+..... +....+..+...|..+...|+|++|++.+++++.......+.. ..
T Consensus 16 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDE--------EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp ------CCCSGGGCCHH--------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHH--------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 45566666554442222 2233677889999999999999999999999998654332211 12
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHH
Q 002424 747 ASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLE 826 (924)
Q Consensus 747 a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~ 826 (924)
..++..+|.++...|+++.|+..+.+++.+.. ....++..+|.++..+|+. ++|+..+++++..-- .+
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~--~~A~~~~~~al~~~p--~~-- 155 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDK------NNVKALYKLGVANMYFGFL--EEAKENLYKAASLNP--NN-- 155 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHST--TC--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHCC--Cc--
Confidence 57899999999999999999999999998732 2256788899999999998 999999999986622 12
Q ss_pred HHHHHHHHHHHhhhc
Q 002424 827 LRARAFIAEAKCLLS 841 (924)
Q Consensus 827 ~~A~a~~~LAr~~la 841 (924)
..++..++.++..
T Consensus 156 --~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 156 --LDIRNSYELCVNK 168 (198)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 3455566666555
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0003 Score=66.71 Aligned_cols=102 Identities=15% Similarity=0.033 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
...+.+.+|..+...|++++|++.+++++... .....++..+|.++...|+++.|+..+.+++.+.-.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------ 84 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD------HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN------ 84 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------
Confidence 56788999999999999999999999998742 233678889999999999999999999999987432
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
...+...+|.++..+|+. ++|+..++.++...-.
T Consensus 85 ~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDL--DGAESGFYSARALAAA 118 (142)
T ss_dssp CTHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCC
Confidence 235678899999999998 9999999999887653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00076 Score=61.75 Aligned_cols=112 Identities=14% Similarity=-0.003 Sum_probs=86.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|+|.+|...+.+++...+ +......+.+.+|.++...|++++|+..+++++... .+......++..
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~ 81 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYP-----NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY---PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS-----SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCC-----CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC---CCCcccHHHHHH
Confidence 577899999999999999988643 222345889999999999999999999999998742 222334678999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAE 795 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~ 795 (924)
+|.++...|+++.|+..+.+++... ........++..|..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY---PGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS---TTSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHH
Confidence 9999999999999999999888764 233344444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0001 Score=72.25 Aligned_cols=124 Identities=13% Similarity=0.019 Sum_probs=98.1
Q ss_pred HHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Q 002424 676 LHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAE 755 (924)
Q Consensus 676 l~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~ 755 (924)
...|++++|...+++++...+ . ...++..+|.++...|++++|+..+++++..... ...++..+|.
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-------~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~ 86 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-------Q-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE------NAELYAALAT 86 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-------S-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS------CHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCC-------C-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHH
Confidence 468999999999999988522 1 3578899999999999999999999999886432 2568889999
Q ss_pred H-HHhcCCh--hhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 756 I-HKKSGNA--VLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 756 i-~~~~G~~--~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
+ +...|++ +.|+..+.+++.+.-. ...++..+|.++...|+. ++|+..+++++...-.
T Consensus 87 ~l~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 87 VLYYQASQHMTAQTRAMIDKALALDSN------EITALMLLASDAFMQANY--AQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTCCT
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcccH--HHHHHHHHHHHhhCCC
Confidence 9 8899999 9999999999887421 246778899999999998 9999999999876433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00021 Score=65.40 Aligned_cols=118 Identities=11% Similarity=-0.013 Sum_probs=95.3
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
.....++..+|..+...|++++|++.+++++... .....++..+|.++...|++++|+..+.+++.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---- 82 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT---- 82 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT----
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----
Confidence 3478899999999999999999999999998631 223678999999999999999999999999987421
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhc
Q 002424 784 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 841 (924)
Q Consensus 784 ~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la 841 (924)
...+...+|.++..+|+. ++|+..+++++...-.. ..++..++.++..
T Consensus 83 --~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~ 130 (133)
T 2lni_A 83 --FIKGYTRKAAALEAMKDY--TKAMDVYQKALDLDSSC------KEAADGYQRCMMA 130 (133)
T ss_dssp --CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCGGG------THHHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHhhH--HHHHHHHHHHHHhCCCc------hHHHHHHHHHHHH
Confidence 346788899999999998 99999999998763322 3456666666654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.71 E-value=7.4e-05 Score=80.20 Aligned_cols=102 Identities=16% Similarity=0.051 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
+.++..+|..+...|+|++|...++++....|... ..+. .++ ..++..|++++|...+++++.+.+ .
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~---~la-~~~~~~~~~~~A~~~~~~al~~~p-------~ 70 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYT---NRA-LCYLKMQQPEQALADCRRALELDG-------Q 70 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHH---HHH-HHHHHTTCHHHHHHHHHHHTTSCT-------T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH--HHHH---HHH-HHHHHhcCHHHHHHHHHHHHHhCC-------C
Confidence 46788999999999999999999999998866321 1111 111 677899999999999999988622 2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF 740 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~ 740 (924)
...+++++|.++...|++++|+..+++++......
T Consensus 71 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 71 -SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 35789999999999999999999999999876643
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00038 Score=63.02 Aligned_cols=111 Identities=8% Similarity=0.017 Sum_probs=91.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++.+|...+++++...+ + ...+...+|.++...|++++|++.+++++.... ....++..
T Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~-----~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~ 85 (131)
T 2vyi_A 20 NEQMKVENFEAAVHFYGKAIELNP-----A---NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP------AYSKAYGR 85 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHcCC-----C---CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc------cCHHHHHH
Confidence 677899999999999999988632 1 357889999999999999999999999987522 22668899
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN 803 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~ 803 (924)
+|.++...|+++.|+..+.+++.+... ...+...++.++..+|+.
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPD------NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCcc------chHHHHHHHHHHHHHhcC
Confidence 999999999999999999999887431 135667788888888764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00027 Score=63.50 Aligned_cols=119 Identities=20% Similarity=0.113 Sum_probs=91.2
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
||.....++..++.++...|++++|++.+++++.... ....++..+|.++...|+++.|+..+.+++.+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-- 75 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-- 75 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--
Confidence 4555678899999999999999999999999987522 23568889999999999999999999999876321
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhh
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLL 840 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~l 840 (924)
...+...+|.++...|+. ++|...+++++...- .+ ..++..+|.++.
T Consensus 76 ----~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~ 122 (125)
T 1na0_A 76 ----NAEAWYNLGNAYYKQGDY--DEAIEYYQKALELDP--NN----AEAKQNLGNAKQ 122 (125)
T ss_dssp ----CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCT--TC----HHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHH
Confidence 135677899999999998 999999999876521 12 234555555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.69 E-value=2.7e-05 Score=90.55 Aligned_cols=178 Identities=13% Similarity=-0.021 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
..+.++.++|..+..+|+|++|.+.+++|.+..|... ..+. .+ +..+...|++++|...+++++.+.+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~--~~~~---~l-g~~~~~~g~~~~A~~~~~~al~l~p------ 71 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYG---NR-SLAYLRTECYGYALGDATRAIELDK------ 71 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH--HHHH---HH-HHHHHHTTCHHHHHHHHHHHHHSCT------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--HHHH---HH-HHHHHHhcCHHHHHHHHHHHHHhCC------
Confidence 3455567778888899999999999999998865321 1111 11 1677899999999999999998622
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH--HHhcCChhhhHHHHH---------
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEI--HKKSGNAVLGIPYAL--------- 771 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i--~~~~G~~~~Al~~l~--------- 771 (924)
. ...+++++|.++..+|++++|++.++++++... .... ++..++.+ +.+.|++++|+..+.
T Consensus 72 -~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p----~~~~--~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 143 (477)
T 1wao_1 72 -K-YIKGYYRRAASNMALGKFRAALRDYETVVKVKP----HDKD--AKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSL 143 (477)
T ss_dssp -T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST----TCTT--HHHHHHHHHHHHHHHHHCCC------CCSTTTCC
T ss_pred -C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHH--HHHHHHHHHHHHHHHHHHHHhccccccchhHhhh
Confidence 2 467899999999999999999999999988522 1222 34444444 888999999999988
Q ss_pred --HHHHHHHHhCCcH-----HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 772 --ASLSFCQLLNLDL-----LKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 772 --~AL~la~~~g~~~-----~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
+++.+...+..+. .....+..+.+.+...+...-..+..++.++.....
T Consensus 144 ~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~ 199 (477)
T 1wao_1 144 DIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLS 199 (477)
T ss_dssp TTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHc
Confidence 5554433221111 111222234444444444434566667777666554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00013 Score=67.79 Aligned_cols=91 Identities=16% Similarity=-0.009 Sum_probs=76.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++.+|...+++++.+.+ . ...+++.+|.++...|++++|+..+++++.... ....++..
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P-------~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P------~~~~~~~~ 90 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEP-------E-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP------KDIAVHAA 90 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-------T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHH
Confidence 567789999999999999998622 2 467899999999999999999999999988522 22568899
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+|.++...|++++|+..+.+++.+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00041 Score=79.99 Aligned_cols=132 Identities=15% Similarity=0.030 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc---------hHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhh
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK---------SRILLLKLQLLHERSLHRGHLKLAQKVCDELGV 693 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~---------~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~ 693 (924)
..+.++.++|..+..+|+|++|...+++|.+..+.... .......+......++..|+|.+|...+.+++.
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 44678899999999999999999999999998776531 001111111122677889999999999999988
Q ss_pred hhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHH
Q 002424 694 MASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIP 768 (924)
Q Consensus 694 l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~ 768 (924)
+.+ . ...+++++|.++..+|+|++|+..+++++.+. .....++..++.++...|++.+|..
T Consensus 346 ~~p-------~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~------P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 346 LDS-------A-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN------PQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HST-------T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCC-------c-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 632 2 36788999999999999999999999888642 2234577788888888888776643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00022 Score=66.17 Aligned_cols=102 Identities=16% Similarity=0.033 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.+..+..+|..+...|+|++|+..+++++.... ....++..+|.++...|++..|+..+.+++.+...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------ 75 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP------LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ------ 75 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc------CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch------
Confidence 467889999999999999999999999988532 23678999999999999999999999999987532
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
...++..+|.++..+|+. ++|+..+++++...-.
T Consensus 76 ~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 76 SVKAHFFLGQCQLEMESY--DEAIANLQRAYSLAKE 109 (137)
T ss_dssp CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHChh
Confidence 356788899999999998 9999999999987654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00068 Score=77.61 Aligned_cols=109 Identities=13% Similarity=0.021 Sum_probs=85.5
Q ss_pred HccCHHHHHHHHHHHHHHhhc-cCchHHHHH-HHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHH
Q 002424 637 VFKGYKEAFSALKIAEEKFLS-VSKSRILLL-KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHA 714 (924)
Q Consensus 637 ~~G~y~eA~~~L~~a~~~f~~-~~~~~~~~l-~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a 714 (924)
..|+|++|..++++++++... +++.+...+ .++.++..+..+|+|++|+.++++++.+...+-+.+-...+..++++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 468999999999999997654 455443332 244444788999999999999999999876654444444788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH-cccchh
Q 002424 715 RTLLAANQFSEAAAVAHSLFCMCYK-FNLQVE 745 (924)
Q Consensus 715 ~ll~~~G~~~eAl~~l~~aL~~~~~-~gd~~~ 745 (924)
.++..+|+|++|..++++++++... .|..+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 9999999999999999999998765 454433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0002 Score=70.22 Aligned_cols=124 Identities=15% Similarity=0.058 Sum_probs=90.2
Q ss_pred HHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHH
Q 002424 636 AVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHAR 715 (924)
Q Consensus 636 a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ 715 (924)
...|+|++|...++.+.+..|.. ...+.. + +..++..|++++|...+++++.+.+ + ...+...+|.
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~--~~~~~~---l-g~~~~~~~~~~~A~~~~~~al~~~p-----~---~~~~~~~la~ 86 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQN--SEQWAL---L-GEYYLWQNDYSNSLLAYRQALQLRG-----E---NAELYAALAT 86 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSC--HHHHHH---H-HHHHHHTTCHHHHHHHHHHHHHHHC-----S---CHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCc--HHHHHH---H-HHHHHHcCCHHHHHHHHHHHHHcCC-----C---CHHHHHHHHH
Confidence 35688999999999888776532 122211 1 1577789999999999999988633 1 2567788888
Q ss_pred H-HHHcCCH--HHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 716 T-LLAANQF--SEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 716 l-l~~~G~~--~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
+ +...|++ ++|+..+++++.... ....++..+|.++...|+++.|+..+.+++.+.-.
T Consensus 87 ~l~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 87 VLYYQASQHMTAQTRAMIDKALALDS------NEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 8 7789998 999999999887421 22567888999999999999999999998887543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00059 Score=63.23 Aligned_cols=101 Identities=16% Similarity=0.061 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
+..+..+|..+...|+|++|...++.+....|... ..+. .+ +..++..|++++|...+++++.+.+ .
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~---~l-~~~~~~~~~~~~A~~~~~~al~~~p-------~ 75 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYT---NR-ALCYLKMQQPEQALADCRRALELDG-------Q 75 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH---HH-HHHHHHTTCHHHHHHHHHHHHHHCT-------T
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH--HHHH---HH-HHHHHHhcCHHHHHHHHHHHHHhCc-------h
Confidence 56778888888889999999999888887765321 1111 11 1566788889989888888887632 1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK 739 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~ 739 (924)
...+++.+|.++...|++++|+..+++++.....
T Consensus 76 -~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 76 -SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 3567888888888888888888888888876554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00022 Score=79.98 Aligned_cols=141 Identities=13% Similarity=0.063 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.+..+..+|..+...|+|++|++.+++++..+.... ..- ..-........
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------------~~~-------------~~~~~~~~~~~ 271 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------------AAA-------------EDADGAKLQPV 271 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------HHS-------------CHHHHGGGHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------------ccc-------------ChHHHHHHHHH
Confidence 677777788888888888888888887777544321 000 00111224455
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
.+.++.++|.++..+|+. ++|+..+++++..- . ..+.+++.+|.++.. .|++++|+.++++|++..
T Consensus 272 ~~~~~~nla~~~~~~g~~--~~A~~~~~~al~~~----p--~~~~a~~~lg~~~~~------~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDW--QGAVDSCLEALEID----P--SNTKALYRRAQGWQG------LKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTC----T--TCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCH--HHHHHHHHHHHHhC----c--hhHHHHHHHHHHHHH------ccCHHHHHHHHHHHHHhC
Confidence 667888999999999998 99999999998742 1 347789999999999 899999999999999874
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 866 QVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 866 ~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
-. -..+...++.++..+|+..++.+
T Consensus 338 P~------~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 338 PE------DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TT------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 34577788888888887776554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00017 Score=66.94 Aligned_cols=97 Identities=13% Similarity=0.002 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
...+.+|..+...|++++|+..+++++... .....++..+|.++...|+++.|+..+.+|+.+.-. ..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~ 85 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------DI 85 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CH
Confidence 346789999999999999999999998842 223778899999999999999999999999988532 23
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 788 SATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 788 ~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
.++..||.++..+|+. ++|+..+++++..
T Consensus 86 ~~~~~la~~~~~~g~~--~~A~~~~~~al~~ 114 (121)
T 1hxi_A 86 AVHAALAVSHTNEHNA--NAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCH--HHHHHHHHHHHHh
Confidence 5778899999999998 9999999998764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00065 Score=60.33 Aligned_cols=98 Identities=12% Similarity=-0.049 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+.++..+|..+...|+|++|...++.+....|.. ...+. .++ ..+...|++.+|...++++..+.+ +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~---~~a-~~~~~~~~~~~A~~~~~~~~~~~~-----~- 70 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN--HVLYS---NRS-AAYAKKGDYQKAYEDGCKTVDLKP-----D- 70 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH---HHH-HHHHHHTCHHHHHHHHHHHHHHCT-----T-
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--HHHHH---HHH-HHHHhhccHHHHHHHHHHHHHhCc-----c-
Confidence 35678888999999999999999999988876532 11111 111 566788999999999999888622 1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~ 735 (924)
...+...+|.++...|++++|.+.+++++.
T Consensus 71 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 71 --WGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 356788899999999999999999988876
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.011 Score=66.47 Aligned_cols=206 Identities=9% Similarity=-0.014 Sum_probs=161.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcccchhHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL-AANQFSEAAAVAHSLFCMCYKFNLQVENASVLL 751 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~-~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~ 751 (924)
..+...|++++-.+++.++...+..+... =.+.....+.+... .-|..+.-.+.+.++++.|+.......+-++-.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ka---k~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~ 103 (394)
T 3txn_A 27 ELYKQEGKAKELADLIKVTRPFLSSISKA---KAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEA 103 (394)
T ss_dssp HHHHHHTCHHHHHHHHHHTTTGGGGSCHH---HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhchH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999988877765411 12233333444332 246667777888888888885544444666778
Q ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh-CCHHHHHH
Q 002424 752 LLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH-GGLELRAR 830 (924)
Q Consensus 752 ~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~-gd~~~~A~ 830 (924)
.+|.+|...|++.+|+..+.+.+.-+....+.....++...-..++..+|.. .++...+.++....-.. .++..+|.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~--~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNL--PKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccH--HHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 9999999999999999999999999988888888888888899999999987 99999999998887766 89999999
Q ss_pred HHHHHHHhhh-cCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCC
Q 002424 831 AFIAEAKCLL-SDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGR 890 (924)
Q Consensus 831 a~~~LAr~~l-a~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd 890 (924)
....-|..++ . .+++.+|..++=+|+..|..++.+.... ++..++.+--..++
T Consensus 182 i~~~~Gi~~l~~------~rdyk~A~~~F~eaf~~f~~~~~~~~~~-~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 182 LDLQSGILHAAD------ERDFKTAFSYFYEAFEGFDSVDSVKALT-SLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHHT------TSCHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHh------ccCHHHHHHHHHHHHhcccccccHHHHH-HHHHHHHHHHHcCC
Confidence 9999999999 8 8999999999999999999988875433 33333333334444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00032 Score=80.85 Aligned_cols=122 Identities=10% Similarity=-0.016 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc---------chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL---------QVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd---------~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
.+.++..+|..+...|+|++|+..+++++........ ....+.++.++|.++.+.|++..|+..+.+|+.+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5678899999999999999999999999987654321 1233678999999999999999999999999987
Q ss_pred HHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhc
Q 002424 777 CQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 841 (924)
Q Consensus 777 a~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la 841 (924)
.-. .+.++.++|.++..+|+. ++|+..+++++.+--. -..++..++.++..
T Consensus 347 ~p~------~~~a~~~~g~a~~~~g~~--~~A~~~~~~al~l~P~------~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 347 DSA------NEKGLYRRGEAQLLMNEF--ESAKGDFEKVLEVNPQ------NKAARLQISMCQKK 397 (457)
T ss_dssp STT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTC----------CHHHHHHHHHHH
T ss_pred CCc------cHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Confidence 532 257889999999999998 9999999999876322 23467777777776
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00059 Score=60.62 Aligned_cols=99 Identities=8% Similarity=-0.043 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.+..+..+|..+...|++++|+..+++++.... ....++..+|.++...|+++.|+..+.+++.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------ 70 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP------HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------ 70 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC------CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------
Confidence 467888999999999999999999999987422 23678899999999999999999999999887421
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
...+...+|.++..+|+. ++|+..+++++..
T Consensus 71 ~~~~~~~~a~~~~~~~~~--~~A~~~~~~~~~~ 101 (118)
T 1elw_A 71 WGKGYSRKAAALEFLNRF--EEAKRTYEEGLKH 101 (118)
T ss_dssp CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHc
Confidence 246778899999999998 9999999998764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00093 Score=62.32 Aligned_cols=103 Identities=13% Similarity=0.007 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
..+..+..+|..+...|+|++|...++++.+..+.... .......++ ..++..|++++|...+++++.+.+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~a-~~~~~~~~~~~A~~~~~~~~~~~~------ 96 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD--QAVLHRNRA-ACHLKLEDYDKAETEASKAIEKDG------ 96 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH--HHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHTS------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH--HHHHHHHHH-HHHHHHccHHHHHHHHHHHHhhCc------
Confidence 34677889999999999999999999998876542100 011111122 677889999999999999988622
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
. ...+++.++.++...|++++|+..+++++..
T Consensus 97 -~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 97 -G-DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp -C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -c-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 1 2577889999999999999999999999875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0034 Score=68.28 Aligned_cols=167 Identities=17% Similarity=0.067 Sum_probs=111.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc----
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM---- 703 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~---- 703 (924)
+.-+|.++...|++++|++++.+....-+..+.-....+.. ..++..|+.+.|...++++... ++
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~v----qi~L~~~r~d~A~k~l~~~~~~-------~~d~~~ 171 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAI----EVALLNNNVSTASTIFDNYTNA-------IEDTVS 171 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHH----HHHHHTTCHHHHHHHHHHHHHH-------SCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHH----HHHHHCCCHHHHHHHHHHHHhc-------Cccccc
Confidence 35789999999999999999997643322111111122221 6888999999999999998774 33
Q ss_pred -chHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 704 -DLKTEASLRHARTLLAAN--QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 704 -~~~a~a~~~~a~ll~~~G--~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
+-.....+..+++.+..| ++.+|+..++++... .++ ......++. ++.+.|++++|...+.+.+.+.-..
T Consensus 172 ~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 172 GDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPT-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCS-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCC-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccc
Confidence 235556666677788888 999999999997542 221 112233333 8999999999999998666654221
Q ss_pred CC----cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 002424 781 NL----DLLKASATLTLAELWLSFGPNHAKMASNLIQQAL 816 (924)
Q Consensus 781 g~----~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aL 816 (924)
+. +..-+.++.++..+...+|. +|.++++++.
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk----~a~~l~~qL~ 280 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL----DTEDLTNQLV 280 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC----TTHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh----HHHHHHHHHH
Confidence 11 12246667677777777887 3666666554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00012 Score=65.19 Aligned_cols=100 Identities=13% Similarity=0.072 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.+.++..+|..+...|+|++|++.+++++.... ....++..+|.++...|+++.|+..+.+++.+....+....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP------QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence 467889999999999999999999999988522 23678899999999999999999999999998776667777
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQ 813 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe 813 (924)
...++..+|.++..+|.. +.|+..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~--~~a~~~~~ 102 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSV--QIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHCC--CCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHhH--hhhHhHHH
Confidence 788899999999999887 66655443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00027 Score=75.75 Aligned_cols=94 Identities=11% Similarity=-0.034 Sum_probs=81.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|+|++|...+++++.+.+ . ...++.++|.++...|++++|++.+++++.. ......++..
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p-------~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~ 77 (281)
T 2c2l_A 12 NRLFVGRKYPEAAACYGRAITRNP-------L-VAVYYTNRALCYLKMQQPEQALADCRRALEL------DGQSVKAHFF 77 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS-------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------CTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-------c-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCCHHHHHH
Confidence 577899999999999999998622 1 3678899999999999999999999998863 2234678999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
+|.++...|++++|+..+.+++.+.-..
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999998655
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00022 Score=65.18 Aligned_cols=90 Identities=13% Similarity=0.013 Sum_probs=71.6
Q ss_pred HcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Q 002424 677 HRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEI 756 (924)
Q Consensus 677 ~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i 756 (924)
..|++++|..++++++.+. ..|| ....+...+|.++...|+|++|++.+++++.... ....++..+|.+
T Consensus 2 ~~g~~~~A~~~~~~al~~~----~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~ 70 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG----LQGK-DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP------NHQALRVFYAMV 70 (117)
T ss_dssp -----CCCHHHHHHHHSSC----CCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC----CCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CchHHHHHHHHH
Confidence 4689999999999998852 1122 2678999999999999999999999999988522 126788999999
Q ss_pred HHhcCChhhhHHHHHHHHHHH
Q 002424 757 HKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 757 ~~~~G~~~~Al~~l~~AL~la 777 (924)
+...|++++|+..+.+++.+.
T Consensus 71 ~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 71 LYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999998874
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00067 Score=63.31 Aligned_cols=102 Identities=14% Similarity=0.024 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.+..++..|..+...|++++|++.+++++... .+......++..+|.++...|++++|+..+.+++.+...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG------ 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc------
Confidence 57889999999999999999999999998731 122234788999999999999999999999999887321
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
...++..+|.++..+|+. ++|+..+++++..
T Consensus 98 ~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~ 128 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRL--DQAVLDLQRCVSL 128 (148)
T ss_dssp CHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHc
Confidence 156778899999999998 9999999999865
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00019 Score=63.32 Aligned_cols=100 Identities=9% Similarity=-0.058 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 786 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 786 (924)
..+...+|.++...|++++|+..+++++.... ....++..+|.++...|+++.|+..+.+++.+... ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~ 75 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP------EESKYWLMKGKALYNLERYEEAVDCYNYVINVIED----EYN 75 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----TTC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----cch
Confidence 35567889999999999999999999987522 22567889999999999999999999999876422 113
Q ss_pred HHHHHHHHHHHHHc-CCChHHHHHHHHHHHHhH
Q 002424 787 ASATLTLAELWLSF-GPNHAKMASNLIQQALPL 818 (924)
Q Consensus 787 A~al~~La~l~~~l-G~~~~~~Al~lLe~aLp~ 818 (924)
..+...+|.++..+ |+. ++|++.++.++..
T Consensus 76 ~~~~~~l~~~~~~~~~~~--~~A~~~~~~~~~~ 106 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKE--VEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHHTTCSSCS--HHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhCCH--HHHHHHHHHHhhc
Confidence 46788899999999 999 9999999998754
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00026 Score=80.57 Aligned_cols=245 Identities=14% Similarity=0.114 Sum_probs=95.8
Q ss_pred HHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccC-chHH--------
Q 002424 593 TAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS-KSRI-------- 663 (924)
Q Consensus 593 ~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~-~~~~-------- 663 (924)
.+|..+|...+....-.....+|-+.. + ..++..++..+...|+|++|...++.+.+..+... +..+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika~---D-~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg 108 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKAD---D-PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCC---C-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhC
Confidence 589999988888775544455554422 1 23566667777778899999888887775421100 0000
Q ss_pred ------------HHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002424 664 ------------LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAH 731 (924)
Q Consensus 664 ------------~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~ 731 (924)
.....+..+.+....|+|.+|..++.++ .-..+++.++..+|+|++|++.+.
T Consensus 109 ~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 109 RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp CHHHHTTTTTCC----------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHH
Confidence 0001111124555566666666555543 114456666666666666666666
Q ss_pred HHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 002424 732 SLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNL 811 (924)
Q Consensus 732 ~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~l 811 (924)
.+. ..+++...+.+....|++..|..+...-. ..+.-+..+...+...|.. ++|+.+
T Consensus 173 KA~-----------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----------~~ad~l~~lv~~Yek~G~~--eEai~l 229 (449)
T 1b89_A 173 KAN-----------STRTWKEVCFACVDGKEFRLAQMCGLHIV----------VHADELEELINYYQDRGYF--EELITM 229 (449)
T ss_dssp HHT-----------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT----------TCHHHHHHHHHHHHHTTCH--HHHHHH
T ss_pred HcC-----------CchhHHHHHHHHHHcCcHHHHHHHHHHHH----------hCHhhHHHHHHHHHHCCCH--HHHHHH
Confidence 551 14455555566666666666644333210 0111133477788888986 999999
Q ss_pred HHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHH-----HHHHHHHHHHHHHH
Q 002424 812 IQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHE-----LAAEAFYLIAIVFD 886 (924)
Q Consensus 812 Le~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~-----~~~~vl~~lA~l~~ 886 (924)
++.+|..=+.| .-++..||-++.. =.+++..++++ ..+.++.-|. .+......+..+|.
T Consensus 230 Le~aL~le~ah------~~~ftel~il~~k-------y~p~k~~ehl~---~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 230 LEAALGLERAH------MGMFTELAILYSK-------FKPQKMREHLE---LFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHTTSTTCC------HHHHHHHHHHHHT-------TCHHHHHHHHH---HHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHhCCcHHH------HHHHHHHHHHHHh-------cCHHHHHHHHH---HHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99998654333 3355556655544 22344444443 2334666666 66777889999999
Q ss_pred hcCCHHHHHH
Q 002424 887 KLGRLAEREE 896 (924)
Q Consensus 887 ~lGd~~~r~~ 896 (924)
.-|+.+.|-.
T Consensus 294 ~~~e~d~A~~ 303 (449)
T 1b89_A 294 KYEEYDNAII 303 (449)
T ss_dssp HTTCHHHHHH
T ss_pred hhchHHHHHH
Confidence 9999987655
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.002 Score=58.13 Aligned_cols=92 Identities=10% Similarity=-0.015 Sum_probs=73.6
Q ss_pred HHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCC
Q 002424 683 LAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN 762 (924)
Q Consensus 683 ~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~ 762 (924)
+|...+++++... |. ...+++.+|.++...|++++|+..+++++.... ....++..+|.++...|+
T Consensus 3 ~a~~~~~~al~~~-------p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~ 68 (115)
T 2kat_A 3 AITERLEAMLAQG-------TD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP------TYSVAWKWLGKTLQGQGD 68 (115)
T ss_dssp CHHHHHHHHHTTT-------CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-------CC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC------CcHHHHHHHHHHHHHcCC
Confidence 4667777777642 21 357899999999999999999999999987522 225688999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhCCcHHHHH
Q 002424 763 AVLGIPYALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 763 ~~~Al~~l~~AL~la~~~g~~~~~A~ 788 (924)
++.|+..+.+++.+....++......
T Consensus 69 ~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (115)
T 2kat_A 69 RAGARQAWESGLAAAQSRGDQQVVKE 94 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccHHHHHH
Confidence 99999999999999987776544333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0017 Score=57.64 Aligned_cols=81 Identities=10% Similarity=-0.042 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
...+++.+|.++...|++++|++.+++++.... ....++..+|.++...|++++|+..+.+++.++...++...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~ 79 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP------DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKD 79 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhH
Confidence 357789999999999999999999999988532 12458899999999999999999999999999988887765
Q ss_pred HHHHHHH
Q 002424 786 KASATLT 792 (924)
Q Consensus 786 ~A~al~~ 792 (924)
.......
T Consensus 80 ~~~l~~~ 86 (100)
T 3ma5_A 80 LSELQDA 86 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00068 Score=59.68 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=75.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++.+|...+++++.+.+ + ...+...+|.++...|++++|++.+++++.... ......++..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~~-----~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~~~ 81 (112)
T 2kck_A 14 VLQYDAGNYTESIDLFEKAIQLDP-----E---ESKYWLMKGKALYNLERYEEAVDCYNYVINVIE----DEYNKDVWAA 81 (112)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHCC-----C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC----CTTCHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCc-----C---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc----ccchHHHHHH
Confidence 567789999999999999988632 1 356788999999999999999999999987421 1224678999
Q ss_pred HHHHHHhc-CChhhhHHHHHHHHHH
Q 002424 753 LAEIHKKS-GNAVLGIPYALASLSF 776 (924)
Q Consensus 753 la~i~~~~-G~~~~Al~~l~~AL~l 776 (924)
+|.++... |++++|+..+.+++..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 99999999 9999999999887653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0013 Score=56.04 Aligned_cols=88 Identities=19% Similarity=0.120 Sum_probs=70.1
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
|+.....+...+|.++...|++++|+..+++++.... ....++..+|.++...|++++|+..+.+++.+.-
T Consensus 4 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--- 74 (91)
T 1na3_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--- 74 (91)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---
T ss_pred cccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---
Confidence 4555778899999999999999999999999987522 2356888999999999999999999999988742
Q ss_pred CcHHHHHHHHHHHHHHHHcC
Q 002424 782 LDLLKASATLTLAELWLSFG 801 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG 801 (924)
....+...+|.++..+|
T Consensus 75 ---~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 75 ---NNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ---TCHHHHHHHHHHHHHHC
T ss_pred ---CCHHHHHHHHHHHHhcC
Confidence 12456677888876654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00041 Score=63.30 Aligned_cols=90 Identities=9% Similarity=-0.012 Sum_probs=71.3
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 002424 719 AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWL 798 (924)
Q Consensus 719 ~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~ 798 (924)
..|++++|++.+++++... .+......++..+|.++...|+++.|+..+.+++.+.-.. ..++..+|.++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~ 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLY 72 (117)
T ss_dssp -----CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHH
Confidence 4689999999999998731 0124567899999999999999999999999999874322 567888999999
Q ss_pred HcCCChHHHHHHHHHHHHhHH
Q 002424 799 SFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 799 ~lG~~~~~~Al~lLe~aLp~v 819 (924)
.+|+. ++|+..+++++...
T Consensus 73 ~~g~~--~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 73 NLGRY--EQGVELLLKIIAET 91 (117)
T ss_dssp HHTCH--HHHHHHHHHHHHHH
T ss_pred HcCCH--HHHHHHHHHHHHhC
Confidence 99998 99999999998763
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0006 Score=75.23 Aligned_cols=139 Identities=9% Similarity=-0.074 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-----------chhHHHHHHHHHHHHHhcCChhhhHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL-----------QVENASVLLLLAEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd-----------~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL 774 (924)
.+..+..+|..+...|+|++|+..+++++........ ......++.++|.++...|++..|+.++.+++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567888999999999999999999999875332110 00011488999999999999999999999999
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 002424 775 SFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAV 854 (924)
Q Consensus 775 ~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~A 854 (924)
.+.- ....++..+|.++..+|+. ++|+..+++++..--. ...++..|+++.... .+...++
T Consensus 258 ~~~p------~~~~a~~~lg~a~~~~g~~--~~A~~~l~~al~l~p~------~~~a~~~L~~l~~~~-----~~~~~~a 318 (338)
T 2if4_A 258 TEEE------KNPKALFRRGKAKAELGQM--DSARDDFRKAQKYAPD------DKAIRRELRALAEQE-----KALYQKQ 318 (338)
T ss_dssp HHCT------TCHHHHHHHHHHHHTTTCH--HHHHHHHHHTTC-------------------------------------
T ss_pred HhCC------CCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHH-----HHHHHHH
Confidence 8742 2256788999999999998 9999999999876432 234556666654431 3444555
Q ss_pred HHHHHHHHH
Q 002424 855 LDPLRQASE 863 (924)
Q Consensus 855 l~~L~~A~~ 863 (924)
...+++++.
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 555555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00046 Score=76.17 Aligned_cols=138 Identities=11% Similarity=-0.049 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc------h--HHH----HHHHhhHHHHHHHcCCHHHHHHHHHHH
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK------S--RIL----LLKLQLLHERSLHRGHLKLAQKVCDEL 691 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~------~--~~~----~l~l~l~~~~al~~G~~~~A~~~l~~l 691 (924)
.+..+.++|..+...|+|++|...++++....+.... . ... .+..+++ ..++..|+|.+|...++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla-~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIA-ACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHH-HHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 4566888999999999999999999999987653210 0 000 0111222 5667788888888888888
Q ss_pred hhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH-HhcCChhhhHHHH
Q 002424 692 GVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIH-KKSGNAVLGIPYA 770 (924)
Q Consensus 692 l~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~-~~~G~~~~Al~~l 770 (924)
+.+.+ . ...+++++|.++..+|++++|+..+++++.+.. ....++..++.+. ...+...++...+
T Consensus 257 l~~~p-------~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p------~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 257 LTEEE-------K-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAP------DDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp HHHCT-------T-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHhCC-------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77522 1 356778888888888888888888887765422 1234445555552 3344455555555
Q ss_pred HHHHHH
Q 002424 771 LASLSF 776 (924)
Q Consensus 771 ~~AL~l 776 (924)
.+++..
T Consensus 323 ~~~l~~ 328 (338)
T 2if4_A 323 KGIFKG 328 (338)
T ss_dssp ------
T ss_pred HHhhCC
Confidence 555544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00015 Score=64.62 Aligned_cols=88 Identities=10% Similarity=-0.071 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH
Q 002424 746 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL 825 (924)
Q Consensus 746 ~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~ 825 (924)
.+.++..+|.++...|++.+|+..+.+++.+.-. ...++..+|.++..+|+. ++|+..+++++..--..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ------NPVGYSNKAMALIKLGEY--TQAIQMCQQGLRYTSTAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTSCSSTTSH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhCCCccHH
Confidence 3678889999999999999999999999987432 256788899999999998 99999999999887777777
Q ss_pred HHHHHHHHHHHHhhhc
Q 002424 826 ELRARAFIAEAKCLLS 841 (924)
Q Consensus 826 ~~~A~a~~~LAr~~la 841 (924)
...+.+++.+|.++..
T Consensus 75 ~~~~~~~~~~~~~~~~ 90 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGA 90 (111)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7778888888988877
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00043 Score=80.33 Aligned_cols=119 Identities=8% Similarity=-0.098 Sum_probs=90.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|+|++|...+++++.+.+ . ...++.++|.++..+|++++|++.++++++. + .....++..
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p-------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~-p~~~~~~~~ 79 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNP-------S-NAIYYGNRSLAYLRTECYGYALGDATRAIEL-----D-KKYIKGYYR 79 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCT-------T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----C-TTCHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCC-------c-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----C-CCCHHHHHH
Confidence 355689999999999999998732 1 3688999999999999999999999999874 2 234678999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH--HHHcCCChHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAEL--WLSFGPNHAKMASNLIQ 813 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l--~~~lG~~~~~~Al~lLe 813 (924)
+|.++...|++++|+..+.+|+.+.-... .+...++.+ +...|+. ++|+.+++
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~g~~--~~A~~~~~ 134 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKVKPHDK------DAKMKYQECNKIVKQKAF--ERAIAGDE 134 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCT------THHHHHHHHHHHHHHHHH--CCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHH--HHHhcccc
Confidence 99999999999999999999998743221 233445555 5556665 77777777
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.11 E-value=0.012 Score=63.92 Aligned_cols=163 Identities=15% Similarity=0.016 Sum_probs=109.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc-----hhH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDM-DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ-----VEN 746 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~-~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~-----~~~ 746 (924)
..+...|++++|...+.+.+.. ++ ....++....+.+++..|+.+.|.+.++++... ++ ...
T Consensus 108 ~i~~~~g~~eeAL~~l~~~i~~-------~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-----~~d~~~~~d~ 175 (310)
T 3mv2_B 108 TAQAILGDLDKSLETCVEGIDN-------DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-----IEDTVSGDNE 175 (310)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTS-------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhcc-------CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CccccccchH
Confidence 6777899999999999988652 11 248899999999999999999999999987652 33 234
Q ss_pred HHHHHHHHHHHHhcC--ChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCC
Q 002424 747 ASVLLLLAEIHKKSG--NAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG 824 (924)
Q Consensus 747 a~al~~la~i~~~~G--~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd 824 (924)
+.+.+.-|.|....| ++..|+..+.+.. ..... .-....+ +. +++++|+. ++|...|+.++...-+.+.
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~---~~~p~-~~~~~lL--ln-~~~~~g~~--~eAe~~L~~l~~~~p~~~~ 246 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELS---QTFPT-WKTQLGL--LN-LHLQQRNI--AEAQGIVELLLSDYYSVEQ 246 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHH---TTSCS-HHHHHHH--HH-HHHHHTCH--HHHHHHHHHHHSHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHH---HhCCC-cccHHHH--HH-HHHHcCCH--HHHHHHHHHHHHhcccccc
Confidence 455555565566666 9999999998853 33332 1111222 33 78889997 9999999976655322111
Q ss_pred H----HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 825 L----ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 825 ~----~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
. ..-+.++..+..+... .|+ +|.++++++...
T Consensus 247 k~~~~p~~~~~LaN~i~l~~~------lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 247 KENAVLYKPTFLANQITLALM------QGL--DTEDLTNQLVKL 282 (310)
T ss_dssp CHHHHSSHHHHHHHHHHHHHH------TTC--TTHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHH------hCh--HHHHHHHHHHHh
Confidence 0 1235556555555555 444 566777776653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0055 Score=54.27 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=71.6
Q ss_pred CCCchHHHHHHHHhhhhcCcHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhCChHHHHHHH
Q 002424 315 APELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVL 394 (924)
Q Consensus 315 ~p~~~~~~~l~~L~~~~~~dy~~A~d~Lh~yFD~~~~~~~~~r~~~~~~~~~~~~~~yall~la~~h~~fg~~~~A~~~l 394 (924)
.|+-+.++|..-...++.|+|..|++.+.+...... .+..+..++|.++...|++++|+..+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------------~~~~a~~~lg~~~~~~g~~~~A~~~~ 64 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDP------------------DYVGTYYHLGKLYERLDRTDDAIDTY 64 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------------------TCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------------CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 577888888888888999999999999998887642 12338899999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 002424 395 TEAVCLSQQHSNDTCLAYTLAAIS 418 (924)
Q Consensus 395 ~Eai~~Aqe~~D~~cl~~~l~wl~ 418 (924)
++||.++...+|.........++.
T Consensus 65 ~~al~l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 65 AQGIEVAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHhhhhcCCchhHHHHHHHHHH
Confidence 999999999999887776665443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.016 Score=63.02 Aligned_cols=209 Identities=7% Similarity=-0.069 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHc---CCHHHHHHHHHHHhhhhhccC
Q 002424 625 ALAHVKLIQHLAVFK--GYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHR---GHLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 625 ~~a~~~La~~~a~~G--~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~---G~~~~A~~~l~~ll~l~~~~~ 699 (924)
..+....+.++...| ++++++..++.++...|..-. +|.-+-.+........ +++.++..++.+++..
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~--aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~----- 139 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ--IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS----- 139 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH--HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH--HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh-----
Confidence 356777778888888 999999999999988775433 3332211100111123 8999999999999985
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCC------hhhhHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAANQFS--EAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN------AVLGIPYAL 771 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~G~~~--eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~------~~~Al~~l~ 771 (924)
||. -..++..++.++...|+++ ++++.++.++.. ......++..++.+....|+ +++++..+.
T Consensus 140 --~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~------d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~ 210 (306)
T 3dra_A 140 --DPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT------DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVK 210 (306)
T ss_dssp --CTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHH
T ss_pred --CCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHH
Confidence 322 4688999999999999999 999999998863 23346678888888888887 777888887
Q ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCCh
Q 002424 772 ASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNP 851 (924)
Q Consensus 772 ~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~ 851 (924)
+++.+.- + -..+...++.++..+|.. .++.....++++..- +. ...-..++..+|.++.. .|+.
T Consensus 211 ~aI~~~p--~----n~SaW~y~~~ll~~~~~~-~~~~~~~~~~~~~~~-~~--~~~s~~al~~la~~~~~------~~~~ 274 (306)
T 3dra_A 211 DKIVKCP--Q----NPSTWNYLLGIHERFDRS-ITQLEEFSLQFVDLE-KD--QVTSSFALETLAKIYTQ------QKKY 274 (306)
T ss_dssp HHHHHCS--S----CHHHHHHHHHHHHHTTCC-GGGGHHHHHTTEEGG-GT--EESCHHHHHHHHHHHHH------TTCH
T ss_pred HHHHhCC--C----CccHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcc-CC--CCCCHHHHHHHHHHHHc------cCCH
Confidence 7776531 1 125566788888889986 133445666555421 00 01123477888888887 7899
Q ss_pred HHHHHHHHHHHHHH
Q 002424 852 EAVLDPLRQASEEL 865 (924)
Q Consensus 852 ~~Al~~L~~A~~~f 865 (924)
++|+++++.+.+.+
T Consensus 275 ~~A~~~~~~l~~~~ 288 (306)
T 3dra_A 275 NESRTVYDLLKSKY 288 (306)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999886544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.014 Score=52.41 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=78.7
Q ss_pred HHHHHHHHCCCchHHHHHHHHhhhhcCcHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhCC
Q 002424 307 ILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGH 386 (924)
Q Consensus 307 ~~~~~~~~~p~~~~~~~l~~L~~~~~~dy~~A~d~Lh~yFD~~~~~~~~~r~~~~~~~~~~~~~~yall~la~~h~~fg~ 386 (924)
.+....+..|+.+.+++..-...++.|+|..|++.+.+...... ....+..++|.++...|+
T Consensus 7 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------------~~~~~~~~la~~~~~~g~ 68 (115)
T 2kat_A 7 RLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP------------------TYSVAWKWLGKTLQGQGD 68 (115)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC------------------CcHHHHHHHHHHHHHcCC
Confidence 45555667888888888888888999999999999998877642 223477899999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 002424 387 PKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLS 422 (924)
Q Consensus 387 ~~~A~~~l~Eai~~Aqe~~D~~cl~~~l~wl~~l~~ 422 (924)
+++|+..+++++.+....+|...+......+..+..
T Consensus 69 ~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 69 RAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence 999999999999999999998766665555444443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.079 Score=60.64 Aligned_cols=127 Identities=17% Similarity=-0.025 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh-hCC
Q 002424 746 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG-HGG 824 (924)
Q Consensus 746 ~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~-~gd 824 (924)
++++...+|.++...|++..|...+.+-..-+.+.-+.....+..+....+++..++. .+|..++..+.+.+.. ..+
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~--~~a~~~~~ki~~~~~~~~~~ 213 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDY--SQATVLSRKILKKTFKNPKY 213 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhhcccCCc
Confidence 5777889999999999999999999877666666667778888888899999999998 9999999999876654 467
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 002424 825 LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYL 880 (924)
Q Consensus 825 ~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~ 880 (924)
..++++.+...|+.+.. .+++.+|..++.+++..+...+++.....+++.
T Consensus 214 ~~lk~~~~~~~~~~~~~------e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~ 263 (445)
T 4b4t_P 214 ESLKLEYYNLLVKISLH------KREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSH 263 (445)
T ss_dssp HHHHHHHHHHHHHHHHH------HCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 88999999999999999 899999999999999999999998766555543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0095 Score=56.37 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=89.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Q 002424 720 ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS 799 (924)
Q Consensus 720 ~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~ 799 (924)
.+|+++|+++++++.+. |+.... +|.+|...+...+|+.++.+|... |+ +.+...||.++..
T Consensus 8 ~~d~~~A~~~~~~aa~~----g~~~a~------lg~~y~~g~~~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~ 69 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL----NEMFGC------LSLVSNSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYEN 69 (138)
T ss_dssp HHHHHHHHHHHHHHHHT----TCTTHH------HHHHTCTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcC----CCHhhh------HHHHHHcCCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHc
Confidence 35788999999988763 443332 899999988899999999888765 33 4778889999987
Q ss_pred ----cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 800 ----FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 800 ----lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
.++. ++|+..++++... |+ ..+++.||.++... .+..+++++|+.++++|.+
T Consensus 70 G~g~~~d~--~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G--~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 70 GKYVKKDL--RKAAQYYSKACGL----ND----QDGCLILGYKQYAG--KGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp CSSSCCCH--HHHHHHHHHHHHT----TC----HHHHHHHHHHHHHT--SSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCccH--HHHHHHHHHHHcC----CC----HHHHHHHHHHHHCC--CCCCcCHHHHHHHHHHHHH
Confidence 5555 9999999999643 55 56788999999874 2346889999999999976
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0018 Score=73.69 Aligned_cols=204 Identities=13% Similarity=0.047 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.+...||.++...|++.+|.+.+..+. +...+. .+. ..+...|+|++|...+..+... ..
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika~-------D~~~y~---~V~-~~ae~~g~~EeAi~yl~~ark~---~~------ 92 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKAD-------DPSSYM---EVV-QAANTSGNWEELVKYLQMARKK---AR------ 92 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCC-------CHHHHH---HHH-HHHHhCCCHHHHHHHHHHHHHh---Cc------
Confidence 377899999999999999999887543 211110 011 3555688999988877766542 11
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
...+...++.++.+.|++.++.++++. + ...++..+|..+...|.++.|..++.++
T Consensus 93 ~~~i~~~Li~~Y~Klg~l~e~e~f~~~----------p--n~~a~~~IGd~~~~~g~yeeA~~~Y~~a------------ 148 (449)
T 1b89_A 93 ESYVETELIFALAKTNRLAELEEFING----------P--NNAHIQQVGDRCYDEKMYDAAKLLYNNV------------ 148 (449)
T ss_dssp ----------------CHHHHTTTTTC----------C------------------CTTTHHHHHHHT------------
T ss_pred cchhHHHHHHHHHHhCCHHHHHHHHcC----------C--cHHHHHHHHHHHHHcCCHHHHHHHHHHh------------
Confidence 134455566677777777777666542 1 1126666666677777777776666654
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH---------HHhhCCHHHH----------HHHHHHHHHhhhcCCCCC
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPL---------ILGHGGLELR----------ARAFIAEAKCLLSDPSFS 846 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~---------vl~~gd~~~~----------A~a~~~LAr~~la~~~~~ 846 (924)
.....||.++..+|+. ++|.+.++.+-.. +...|+.... +.-+..+..+|..
T Consensus 149 --~n~~~LA~~L~~Lg~y--q~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek----- 219 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEY--QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQD----- 219 (449)
T ss_dssp --TCHHHHHHHHHTTTCH--HHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHH-----
T ss_pred --hhHHHHHHHHHHhccH--HHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHH-----
Confidence 1234466666666665 6666666655211 0000100000 0001123345555
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcC
Q 002424 847 VSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLG 889 (924)
Q Consensus 847 ~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lG 889 (924)
.|.+++|+.++++|+.. + .....++..+|.+|..-.
T Consensus 220 -~G~~eEai~lLe~aL~l----e--~ah~~~ftel~il~~ky~ 255 (449)
T 1b89_A 220 -RGYFEELITMLEAALGL----E--RAHMGMFTELAILYSKFK 255 (449)
T ss_dssp -TTCHHHHHHHHHHHTTS----T--TCCHHHHHHHHHHHHTTC
T ss_pred -CCCHHHHHHHHHHHhCC----c--HHHHHHHHHHHHHHHhcC
Confidence 67788888888877532 1 333556667777776654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.014 Score=57.06 Aligned_cols=129 Identities=12% Similarity=0.023 Sum_probs=98.5
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc---chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL---QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd---~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
|.+...++...+.-+...|.|+.|.-+..-++.......+ +..+++++..+|+++...|+|.+|...+.+||.+.+.
T Consensus 16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~ 95 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA 95 (167)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 4456677888888999999999999999988877654333 5678999999999999999999999999999999873
Q ss_pred hC-------------------CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhh
Q 002424 780 LN-------------------LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLL 840 (924)
Q Consensus 780 ~g-------------------~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~l 840 (924)
.- +..-+.+.+..+|.++..+|+. ++|+..|+.+=+.. .-.+.-+.|||.|.
T Consensus 96 l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~--~~Ai~~Le~Ip~k~-------Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 96 LSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQD--KDAIAILDGIPSRQ-------RTPKINMLLANLYK 166 (167)
T ss_dssp C--------------------CCCCHHHHHHHHHHHHHHTTCH--HHHHHHHHTSCGGG-------CCHHHHHHHHHHCC
T ss_pred HhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCH--HHHHHHHhcCCchh-------cCHHHHHHHHHHhc
Confidence 21 1123558899999999999998 99999888763332 22456667777664
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.033 Score=46.96 Aligned_cols=85 Identities=15% Similarity=0.037 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
....++.++|..+...|+|++|...++++.+..+.. ...+. .++ ..+...|++++|...+++++.+.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~---~l~-~~~~~~~~~~~A~~~~~~a~~~~p------ 74 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWY---NLG-NAYYKQGDYDEAIEYYQKALELDP------ 74 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH---HHH-HHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHH---HHH-HHHHHHhhHHHHHHHHHHHHhcCC------
Confidence 456788999999999999999999999999876532 11111 111 677889999999999999988632
Q ss_pred cchHHHHHHHHHHHHHHcC
Q 002424 703 MDLKTEASLRHARTLLAAN 721 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G 721 (924)
. ...+...++.++...|
T Consensus 75 -~-~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 75 -N-NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp -T-CHHHHHHHHHHHHHHC
T ss_pred -C-CHHHHHHHHHHHHhcC
Confidence 1 3466777887776654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0051 Score=60.09 Aligned_cols=88 Identities=10% Similarity=0.045 Sum_probs=69.9
Q ss_pred HcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHcccchhH
Q 002424 677 HRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFS----------EAAAVAHSLFCMCYKFNLQVEN 746 (924)
Q Consensus 677 ~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~----------eAl~~l~~aL~~~~~~gd~~~~ 746 (924)
+.+.|.+|...++++..+.+ . .++++.+.|.++...|+++ +|+..+++++++- ...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P----~----~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld------P~~ 79 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP----L----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID------PKK 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT----T----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------TTC
T ss_pred HHhHHHHHHHHHHHHHHHCC----C----CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC------cCc
Confidence 45678899999999988633 1 4688999999999998864 8888888887752 234
Q ss_pred HHHHHHHHHHHHhcC-----------ChhhhHHHHHHHHHHHH
Q 002424 747 ASVLLLLAEIHKKSG-----------NAVLGIPYALASLSFCQ 778 (924)
Q Consensus 747 a~al~~la~i~~~~G-----------~~~~Al~~l~~AL~la~ 778 (924)
..++..+|.+|...| ++++|+.++.+|+++--
T Consensus 80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 778899999998875 89999999999998853
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.17 Score=54.83 Aligned_cols=227 Identities=9% Similarity=-0.016 Sum_probs=143.8
Q ss_pred HHHccCH-HHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcC--CHHHHHHHHHHHhhhhhccCCCCcchHHHHHH
Q 002424 635 LAVFKGY-KEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG--HLKLAQKVCDELGVMASSVTGVDMDLKTEASL 711 (924)
Q Consensus 635 ~a~~G~y-~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G--~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~ 711 (924)
....|+| ++|+...+.++..-|.. ...|..+- ......| ++.++..++..++...+. ...+++
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~--~taWn~R~----~~L~~l~~~~~~eeL~~~~~~L~~nPk--------~y~aW~ 107 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASH--YTIWIYRF----NILKNLPNRNLYDELDWCEEIALDNEK--------NYQIWN 107 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTC--HHHHHHHH----HHHHTCTTSCHHHHHHHHHHHHHHCTT--------CCHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHH--HHHHHHHH----HHHHHcccccHHHHHHHHHHHHHHCcc--------cHHHHH
Confidence 3445554 68999999998875532 22454441 2334566 999999999999986442 246777
Q ss_pred HHHHHH----HHc---CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChh--hhHHHHHHHHHHHHHhCC
Q 002424 712 RHARTL----LAA---NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAV--LGIPYALASLSFCQLLNL 782 (924)
Q Consensus 712 ~~a~ll----~~~---G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~--~Al~~l~~AL~la~~~g~ 782 (924)
.++.++ ... ++++++++.++.++.. ......++..++.+....|.++ .++..+.+++..--
T Consensus 108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~---- 177 (306)
T 3dra_A 108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSS------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL---- 177 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC----
Confidence 788887 666 8999999999999873 2334678888899999999988 89999888886531
Q ss_pred cHHHHHHHHHHHHHHHHcCCC----hHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCC-hHHHHHH
Q 002424 783 DLLKASATLTLAELWLSFGPN----HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQN-PEAVLDP 857 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~----~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~-~~~Al~~ 857 (924)
. -..|..+-+.+...+|.. .++++++.+++++..--...+ +.+.++-++.. .|. .+.+.++
T Consensus 178 ~--N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S------aW~y~~~ll~~------~~~~~~~~~~~ 243 (306)
T 3dra_A 178 K--NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS------TWNYLLGIHER------FDRSITQLEEF 243 (306)
T ss_dssp T--CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH------HHHHHHHHHHH------TTCCGGGGHHH
T ss_pred C--CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCcc------HHHHHHHHHHh------cCCChHHHHHH
Confidence 1 123445556666666651 137888888887765332222 33344444433 233 2334444
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 002424 858 LRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYV 905 (924)
Q Consensus 858 L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~ 905 (924)
.+++...- +....-..++..+|.+|...|+.+++. ..|..+.
T Consensus 244 ~~~~~~~~---~~~~~s~~al~~la~~~~~~~~~~~A~---~~~~~l~ 285 (306)
T 3dra_A 244 SLQFVDLE---KDQVTSSFALETLAKIYTQQKKYNESR---TVYDLLK 285 (306)
T ss_dssp HHTTEEGG---GTEESCHHHHHHHHHHHHHTTCHHHHH---HHHHHHH
T ss_pred HHHHHhcc---CCCCCCHHHHHHHHHHHHccCCHHHHH---HHHHHHH
Confidence 44443210 001122347888999999888886644 4444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.038 Score=52.13 Aligned_cols=110 Identities=12% Similarity=-0.010 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHH
Q 002424 679 GHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHK 758 (924)
Q Consensus 679 G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~ 758 (924)
.++.+|..+++++... + ++... ++.++...+..++|+++++++... +...++..+|.+|.
T Consensus 9 ~d~~~A~~~~~~aa~~----g--~~~a~------lg~~y~~g~~~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~y~ 68 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL----N--EMFGC------LSLVSNSQINKQKLFQYLSKACEL--------NSGNGCRFLGDFYE 68 (138)
T ss_dssp HHHHHHHHHHHHHHHT----T--CTTHH------HHHHTCTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC----C--CHhhh------HHHHHHcCCCHHHHHHHHHHHHcC--------CCHHHHHHHHHHHH
Confidence 4688899999988763 3 33222 888888888999999999988762 44788999999999
Q ss_pred h----cCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHhH
Q 002424 759 K----SGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS----FGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 759 ~----~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~----lG~~~~~~Al~lLe~aLp~ 818 (924)
. .+++.+|+.++.+|.+. |+ +.+...||.++.. .++. ++|+..++.+...
T Consensus 69 ~G~g~~~d~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~g~~~d~--~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 69 NGKYVKKDLRKAAQYYSKACGL----ND----QDGCLILGYKQYAGKGVVKNE--KQAVKTFEKACRL 126 (138)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCH--HHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHCCCCCCcCH--HHHHHHHHHHHHC
Confidence 8 89999999999988754 33 4678889999987 5665 9999999988543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.23 Score=59.82 Aligned_cols=222 Identities=10% Similarity=-0.004 Sum_probs=141.1
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHH-HHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCH
Q 002424 645 FSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQ-KVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQF 723 (924)
Q Consensus 645 ~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~-~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~ 723 (924)
..++++++..+|. ...+|.... ......|+..+|. .+++++....+ + ........+.+....|++
T Consensus 329 ~~~Ye~aL~~~p~--~~~lW~~ya----~~~~~~~~~~~a~r~il~rAi~~~P-----~---s~~Lwl~~a~~ee~~~~~ 394 (679)
T 4e6h_A 329 TYVYMQAAQHVCF--APEIWFNMA----NYQGEKNTDSTVITKYLKLGQQCIP-----N---SAVLAFSLSEQYELNTKI 394 (679)
T ss_dssp HHHHHHHHHHTTT--CHHHHHHHH----HHHHHHSCCTTHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHH----HHHHhcCcHHHHHHHHHHHHHHhCC-----C---CHHHHHHHHHHHHHhCCH
Confidence 3456666666653 344666543 3345668888886 99998877433 1 235567788888899999
Q ss_pred HHHHHHHHHHHHHHHHc------ccc----------hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 724 SEAAAVAHSLFCMCYKF------NLQ----------VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 724 ~eAl~~l~~aL~~~~~~------gd~----------~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
++|.+.++.++...... ..+ .....+++..+.+..+.|..++|...+.+|+........
T Consensus 395 e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~----- 469 (679)
T 4e6h_A 395 PEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP----- 469 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT-----
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh-----
Confidence 99999999988743100 000 112446777788888889999999999888765111111
Q ss_pred HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 002424 788 SATLTLAELWLSFGP-NHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 866 (924)
Q Consensus 788 ~al~~La~l~~~lG~-~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~ 866 (924)
.+....|.+....|. . ++|+.+++.+|...-.... ....+++.... .|+.+.|...+++|+....
T Consensus 470 ~lyi~~A~lE~~~~~d~--e~Ar~ife~~Lk~~p~~~~------~w~~y~~fe~~------~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 470 DIYLENAYIEYHISKDT--KTACKVLELGLKYFATDGE------YINKYLDFLIY------VNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHHHTTTSCC--HHHHHHHHHHHHHHTTCHH------HHHHHHHHHHH------HTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHCCCchH------HHHHHHHHHHh------CCCHHHHHHHHHHHHHhcC
Confidence 222334444445554 6 8999999999987543222 23344454555 6778888888888876432
Q ss_pred hhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002424 867 VLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFK 902 (924)
Q Consensus 867 ~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~ 902 (924)
++.....+.......-...|+.+........+.
T Consensus 536 ---~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 536 ---DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp ---STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233555666666777777888877555444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.13 Score=56.95 Aligned_cols=140 Identities=11% Similarity=-0.031 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCC--hhhhHHHHHHHHHHHHHh
Q 002424 706 KTEASLRHARTLLAANQ---FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN--AVLGIPYALASLSFCQLL 780 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~---~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~--~~~Al~~l~~AL~la~~~ 780 (924)
.+.-.+..|.-++..++ +.+|+++++++++. ......+.+...++.+...... .......+.+++......
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l----DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS----SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 34555666666666554 47888999988874 3334455555555554332222 222233344455533444
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 002424 781 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 860 (924)
Q Consensus 781 g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~ 860 (924)
......+.++..++.++...|+. ++|+..+++++.+- .+ +.++..+|+++.- .|++++|++.+++
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~--d~A~~~l~rAl~Ln---~s----~~a~~llG~~~~~------~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKT--DESYQAINTGIDLE---MS----WLNYVLLGKVYEM------KGMNREAADAYLT 335 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHC---CC----HHHHHHHHHHHHH------TTCHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCH--HHHHHHHHHHHhcC---CC----HHHHHHHHHHHHH------CCCHHHHHHHHHH
Confidence 44555666777777777778998 99999999998882 33 5678899999998 8999999999999
Q ss_pred HHHH
Q 002424 861 ASEE 864 (924)
Q Consensus 861 A~~~ 864 (924)
|+..
T Consensus 336 AlrL 339 (372)
T 3ly7_A 336 AFNL 339 (372)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9874
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.83 Score=52.08 Aligned_cols=210 Identities=13% Similarity=0.022 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchH-HHHHHHhhHHHHHHHcC--CHHHHHHHHHHHhhhhhccC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR-ILLLKLQLLHERSLHRG--HLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~-~~~l~l~l~~~~al~~G--~~~~A~~~l~~ll~l~~~~~ 699 (924)
...+++..+...+...|+|+...+++.-.. ..++..... ..++...+ ...-... +...-......+ ..+.
T Consensus 54 s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls-kkr~qlk~ai~~~V~~~~--~~l~~~~~~d~~~~~~~i~~l----~~vt 126 (445)
T 4b4t_P 54 SSKEVLAKIVDLLASRNKWDDLNEQLTLLS-KKHGQLKLSIQYMIQKVM--EYLKSSKSLDLNTRISVIETI----RVVT 126 (445)
T ss_dssp TCHHHHHHHHHHHHHHSCHHHHHHHHHHHH-TTTTTSHHHHHHHHHHHH--HHHHHHCTTHHHHHHHHHHCC----SSSS
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHH--HHHhcCCchhHHHHHHHHHHH----HHHh
Confidence 345667777788888899988877665322 222221222 12222111 1111112 111112222211 2222
Q ss_pred CCCcc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 700 GVDMD---LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 700 ~~D~~---~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
..-.. .++.....++.++...|++.+|.+.+.++...+...-+......+.+....++...+++.+|...+.++...
T Consensus 127 e~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~ 206 (445)
T 4b4t_P 127 ENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKK 206 (445)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 11111 166778899999999999999999999998887766677788899999999999999999999999887655
Q ss_pred H-HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHH-HHhhhc
Q 002424 777 C-QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAE-AKCLLS 841 (924)
Q Consensus 777 a-~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~L-Ar~~la 841 (924)
+ .....+...+.-...+|.++..-++. .+|-.++.++.......++....-.++... ..+.++
T Consensus 207 ~~~~~~~~~lk~~~~~~~~~~~~~e~~y--~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa 271 (445)
T 4b4t_P 207 TFKNPKYESLKLEYYNLLVKISLHKREY--LEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLS 271 (445)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhC
Confidence 5 44456778888888899999888876 999999999999988888876544443333 333444
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.1 Score=50.90 Aligned_cols=107 Identities=11% Similarity=-0.023 Sum_probs=84.0
Q ss_pred HHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccC-CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 002424 663 ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT-GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN 741 (924)
Q Consensus 663 ~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~-~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~g 741 (924)
.|.+..++ ...+..|.|+.|+-+..-++++...-. ..-|...+++....|+.+...|+|.+|...++++|..++...
T Consensus 20 ~~~l~dqi--k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 20 HMNVIDHV--RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS 97 (167)
T ss_dssp -CCHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHH--HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence 35555554 677899999999999998888743211 113677899999999999999999999999999999888422
Q ss_pred -------------------cchhHHHHHHHHHHHHHhcCChhhhHHHHH
Q 002424 742 -------------------LQVENASVLLLLAEIHKKSGNAVLGIPYAL 771 (924)
Q Consensus 742 -------------------d~~~~a~al~~la~i~~~~G~~~~Al~~l~ 771 (924)
+...+.++...+|.+|.+.|++..|+..+.
T Consensus 98 k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 98 KTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp -------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 122345788889999999999999998875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.26 Score=57.24 Aligned_cols=168 Identities=11% Similarity=-0.015 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHH---------HcCCHHHHHHHHHHHhhhhhc
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSL---------HRGHLKLAQKVCDELGVMASS 697 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al---------~~G~~~~A~~~l~~ll~l~~~ 697 (924)
.+.++-..+++.|++++|+++++++.+.- ...+.. .++.+..... ..|++.+|.+++.++.. ..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~G--v~pd~~---tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~--~G 100 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNG--VQLSQY---HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV--DK 100 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHT--CCCCHH---HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHh---HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH--hC
Confidence 34555677889999999999999988642 222211 0110001111 23457889999998876 22
Q ss_pred cCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 698 VTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 698 ~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+. |. ..+...+...+.+.|++++|+++++++... |.. ....+...+-..+.+.|+.++|...+.+-..
T Consensus 101 ~~---Pd--~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----g~~-Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-- 168 (501)
T 4g26_A 101 VV---PN--EATFTNGARLAVAKDDPEMAFDMVKQMKAF----GIQ-PRLRSYGPALFGFCRKGDADKAYEVDAHMVE-- 168 (501)
T ss_dssp CC---CC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred CC---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CccceehHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 22 22 355677888899999999999999988652 322 2344555556677899999999999876543
Q ss_pred HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 778 QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 778 ~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
.|...-. .....|-..+...|+. ++|.+++++--..
T Consensus 169 --~G~~Pd~-~ty~~Li~~~~~~g~~--d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 169 --SEVVPEE-PELAALLKVSMDTKNA--DKVYKTLQRLRDL 204 (501)
T ss_dssp --TTCCCCH-HHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred --cCCCCCH-HHHHHHHHHHhhCCCH--HHHHHHHHHHHHh
Confidence 3332222 2345566778889998 9999999886443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.068 Score=47.74 Aligned_cols=71 Identities=10% Similarity=0.050 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN-LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~g-d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+.-.+.+|..+...|+|..|..+++.++....... .......++..+|.++.+.|++..|+.++.+++.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 45567899999999999999999999998765322 234567899999999999999999999999998774
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.39 Score=57.88 Aligned_cols=213 Identities=8% Similarity=-0.051 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHccCHHHHH-HHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhc-c-----
Q 002424 626 LAHVKLIQHLAVFKGYKEAF-SALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASS-V----- 698 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~-~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~-~----- 698 (924)
......|..+...|+.++|. .+|++|....|. ...+|.... ......|+++.|+.++++++..... .
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~--s~~Lwl~~a----~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~ 417 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN--SAVLAFSLS----EQYELNTKIPEIETTILSCIDRIHLDLAALME 417 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT--CHHHHHHHH----HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC--CHHHHHHHH----HHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 45556677777889989997 999999876662 222333221 4455789999999999999874210 0
Q ss_pred -CCCC-------cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCC-hhhhHHH
Q 002424 699 -TGVD-------MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN-AVLGIPY 769 (924)
Q Consensus 699 -~~~D-------~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~-~~~Al~~ 769 (924)
.+.. ......++...+.+..+.|+.++|...+.+++... +... ..+....|.+-.+.|. +++|...
T Consensus 418 ~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~---~~~~--~~lyi~~A~lE~~~~~d~e~Ar~i 492 (679)
T 4e6h_A 418 DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK---KLVT--PDIYLENAYIEYHISKDTKTACKV 492 (679)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG---GGSC--THHHHHHHHHHHTTTSCCHHHHHH
T ss_pred ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCCC--hHHHHHHHHHHHHhCCCHHHHHHH
Confidence 0000 00134567777888889999999999999887641 1111 2344556667667655 8999999
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCC
Q 002424 770 ALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQ 849 (924)
Q Consensus 770 l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g 849 (924)
+.+++..+- ... ......+......|.. ++|+.++++++..... .......+..+.+-... -|
T Consensus 493 fe~~Lk~~p---~~~---~~w~~y~~fe~~~~~~--~~AR~lferal~~~~~---~~~~~~lw~~~~~fE~~------~G 555 (679)
T 4e6h_A 493 LELGLKYFA---TDG---EYINKYLDFLIYVNEE--SQVKSLFESSIDKISD---SHLLKMIFQKVIFFESK------VG 555 (679)
T ss_dssp HHHHHHHHT---TCH---HHHHHHHHHHHHHTCH--HHHHHHHHHHTTTSSS---TTHHHHHHHHHHHHHHH------TC
T ss_pred HHHHHHHCC---Cch---HHHHHHHHHHHhCCCH--HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHH------cC
Confidence 999998753 221 1223455556668887 9999999999865431 11233344444444444 68
Q ss_pred ChHHHHHHHHHHHHHHH
Q 002424 850 NPEAVLDPLRQASEELQ 866 (924)
Q Consensus 850 ~~~~Al~~L~~A~~~f~ 866 (924)
+.+.+....+++.+.|-
T Consensus 556 ~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 556 SLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp CSHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 88888888888877664
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.055 Score=46.77 Aligned_cols=62 Identities=11% Similarity=0.182 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHH-HHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENAS-VLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~-al~~la~i~~~~G~~~~Al~~l~~AL~la~ 778 (924)
+..|..+...|++++|++.+++++.. ++. ... ++..+|.++...|++++|+..+.+++.+.-
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT-----EPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH-----CSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-----CCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 56788899999999999999999874 222 245 889999999999999999999999998753
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.64 Score=51.48 Aligned_cols=141 Identities=9% Similarity=-0.086 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHhhccCchHHH-HHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 625 ALAHVKLIQHLAVFK---GYKEAFSALKIAEEKFLSVSKSRIL-LLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 625 ~~a~~~La~~~a~~G---~y~eA~~~L~~a~~~f~~~~~~~~~-~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
+.-++-.|..+..++ .+.+|..+|++|.++-|.......+ .++.. .+....+.-......+.++......+.
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~---~~~~~~~~~~~~~~~l~~a~~a~~a~~- 271 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDI---VRHSQHPLDEKQLAALNTEIDNIVTLP- 271 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HHHHHSCCCHHHHHHHHHHHHHHHTCG-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HHhccCCCchhhHHHHHHHHHHHHhcc-
Confidence 334444455555544 4689999999999987754443221 11110 122221111111111111111101111
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 701 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
.|+ ..+.+...++..+...|++++|+..+++++.+. + ...++..+|.++.-.|++++|.+.+.+|+.+.
T Consensus 272 ~~~-~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~--s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 272 ELN-NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-----M--SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp GGT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cCC-cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----C--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 111 245667777777788899999999999999862 2 14567889999999999999999999998884
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.3 Score=41.89 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=48.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE-ASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~-a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
..++..|++.+|...+++++.+ +|. ... +++.+|.++...|++++|++.+++++..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~-------~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT-------EPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-------CSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH-------CCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5677899999999999999886 222 245 8999999999999999999999999885
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.063 Score=52.30 Aligned_cols=85 Identities=11% Similarity=-0.081 Sum_probs=62.5
Q ss_pred HccCHHHHHHHHHHHHHHhhccCchHH-HHHHHhhHHHHHHHc----------CCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 637 VFKGYKEAFSALKIAEEKFLSVSKSRI-LLLKLQLLHERSLHR----------GHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 637 ~~G~y~eA~~~L~~a~~~f~~~~~~~~-~~l~l~l~~~~al~~----------G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
+.+.|++|...++.+.+.-|....... |.. ..... +.+++|...+++++.+ ||.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~-------~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-------dP~- 78 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGG-------VLLELSQFHSISDAKQMIQEAITKFEEALLI-------DPK- 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH-------HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------CTT-
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHH-------HHHHhcccchhhhhHhHHHHHHHHHHHHHHh-------CcC-
Confidence 457799999999999988664333211 111 22222 3377999999999997 332
Q ss_pred HHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAAN-----------QFSEAAAVAHSLFCM 736 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G-----------~~~eAl~~l~~aL~~ 736 (924)
...+++++|.++..+| ++++|++++++++++
T Consensus 79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5688999999998875 899999999999885
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=1.6 Score=47.99 Aligned_cols=173 Identities=11% Similarity=-0.075 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcC-CHHHHHHHHHHHhhhhhccC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG-HLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G-~~~~A~~~l~~ll~l~~~~~ 699 (924)
.++...+...+..+....+..++|++.++.++..-|. ....|..+- ......| ++.++..++..++...+
T Consensus 50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~--~ytaWn~R~----~iL~~l~~~l~eEL~~~~~~L~~nP--- 120 (349)
T 3q7a_A 50 SEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPA--HYTVWQYRF----SLLTSLNKSLEDELRLMNEFAVQNL--- 120 (349)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT--CHHHHHHHH----HHHHHTTCCHHHHHHHHHHHHHTTC---
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCch--hHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHhCC---
Confidence 3444555565555566666778999999998877553 223455441 2223466 59999999999988533
Q ss_pred CCCcchHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChh--------hhHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAA-N-QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAV--------LGIPY 769 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~-G-~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~--------~Al~~ 769 (924)
. ...+++.++.++... | +++++++.++.++. . ......++..++.+....|.++ +++..
T Consensus 121 ----K-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~-----~-dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 121 ----K-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL-----P-DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp ----C-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS-----S-CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ----C-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH-----h-CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 2 467888889998888 8 99999999998875 2 2334667777888887777777 67777
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC-----hHHHHHHHHHHHHhHH
Q 002424 770 ALASLSFCQLLNLDLLKASATLTLAELWLSFGPN-----HAKMASNLIQQALPLI 819 (924)
Q Consensus 770 l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~-----~~~~Al~lLe~aLp~v 819 (924)
+.+++..-- .-..|....+.+...+|.. -++++++.+++++..-
T Consensus 190 ~~k~I~~dp------~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~ 238 (349)
T 3q7a_A 190 CNEMLRVDG------RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI 238 (349)
T ss_dssp HHHHHHHCT------TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCC------CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC
Confidence 777666421 1124556667777667752 1367888877777653
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.34 Score=55.01 Aligned_cols=142 Identities=17% Similarity=0.057 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHcc-cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHH
Q 002424 728 AVAHSLFCMCYKFN-LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAK 806 (924)
Q Consensus 728 ~~l~~aL~~~~~~g-d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~ 806 (924)
+.+.+.+..+.+.. ......+++..+|..|...|+++.|+..+.+....+...+. .....+.+..+.+..|+. .
T Consensus 111 ~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~~d~--~ 185 (429)
T 4b4t_R 111 KELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFYNDQ--L 185 (429)
T ss_dssp HHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHHTCH--H
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHhccH--H
Confidence 44444444444311 22234568889999999999999999999998887754432 334555677777888988 9
Q ss_pred HHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 002424 807 MASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYL 880 (924)
Q Consensus 807 ~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~ 880 (924)
.|...++.+-..+...|+...+++.....|..+++ .+++..|..++-.+...|...+......-+.|.
T Consensus 186 ~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~------~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~ 253 (429)
T 4b4t_R 186 YVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLA------VRNFKEAAKLLVDSLATFTSIELTSYESIATYA 253 (429)
T ss_dssp HHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGG------TSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH------hChHHHHHHHHHHHhccCCccchhhHHHHHHHH
Confidence 99999999999999999999999999999999998 899999999999999888877766655555443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.18 E-value=0.38 Score=46.45 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAAN---QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G---~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
..++.++.|+.+.... +..+|+.++++++.. ..+..+.+++..+|..|.+.|+|.+|+.++.++|++-
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~----~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4688999999999988 777999999998873 2244678899999999999999999999998888763
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=93.08 E-value=0.67 Score=54.61 Aligned_cols=152 Identities=11% Similarity=-0.108 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHccC----------HHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcC--CHHHHHHHHHHHhh
Q 002424 626 LAHVKLIQHLAVFKG----------YKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG--HLKLAQKVCDELGV 693 (924)
Q Consensus 626 ~a~~~La~~~a~~G~----------y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G--~~~~A~~~l~~ll~ 693 (924)
.+....+.++...|+ |++|++.++.+.+..|. ...+|.-+- ......| +|.+|.+.+.+++.
T Consensus 64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK--~y~aW~hR~----w~l~~l~~~~~~~el~~~~k~l~ 137 (567)
T 1dce_A 64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK--SYGTWHHRC----WLLSRLPEPNWARELELCARFLE 137 (567)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHH----HHHHTCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC--CHHHHHHHH----HHHHHcccccHHHHHHHHHHHHh
Confidence 566666777777777 99999999999987663 333454441 2223567 78999999999999
Q ss_pred hhhccCCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc------------
Q 002424 694 MASSVTGVDMDLKTEASLRHARTLLAAN-QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS------------ 760 (924)
Q Consensus 694 l~~~~~~~D~~~~a~a~~~~a~ll~~~G-~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~------------ 760 (924)
+ |+. -..++..++.++...| .+++|++.++++++. ......++..++.++...
T Consensus 138 ~-------d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 138 A-------DER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp H-------CTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred h-------ccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH------CCCCccHHHHHHHHHHhhcccccccccccc
Confidence 6 333 4788999999999999 999999999988752 233456777788877664
Q ss_pred --CChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC
Q 002424 761 --GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN 803 (924)
Q Consensus 761 --G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~ 803 (924)
+.+++|+..+.+|+.+.-. + ..+...++.++...|..
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~--~----~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPN--D----QSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSS--C----SHHHHHHHHHHSCCCCC
T ss_pred cHHHHHHHHHHHHHHHhhCCC--C----ccHHHHHHHHHhcCCCc
Confidence 4457777777777766421 1 24556667776666654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.97 E-value=1 Score=54.47 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=33.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSL 733 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~a 733 (924)
..++..|++++|.+++..+ . + ...+..+|++.+..|+++.|.+++.++
T Consensus 660 ~~~l~~~~~~~A~~~~~~~-------~--~----~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE-------S--A----EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC-------C--C----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhh-------C--c----HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5667788888887654322 1 2 255677888888888888888888764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=92.88 E-value=6.6 Score=42.76 Aligned_cols=161 Identities=8% Similarity=-0.048 Sum_probs=106.0
Q ss_pred HHHccCHH-HHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHc--------CCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 635 LAVFKGYK-EAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHR--------GHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 635 ~a~~G~y~-eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~--------G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
....|+|+ +|+...+.++..-|.. ..+|..+-.+. ..+.. ..+.++..++..++...+ .
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~--ytaWn~Rr~iL--~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-------K- 106 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDF--ATLWNCRREVL--QHLETEKSPEESAALVKAELGFLESCLRVNP-------K- 106 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTC--HHHHHHHHHHH--HHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-------T-
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchh--HHHHHHHHHHH--HHhcccccchhhhHHHHHHHHHHHHHHHhCC-------C-
Confidence 34567766 7888888887665432 23454331111 11111 127788889988887522 2
Q ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCCh-hhhHHHHHHHHHHHHHhCC
Q 002424 706 KTEASLRHARTLLAAN--QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNA-VLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G--~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~-~~Al~~l~~AL~la~~~g~ 782 (924)
...++..++.++...| +++++++.++.++.. ......++..++.+....|.+ +.++..+.+++..-- .+
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p--~N 178 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEA------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF--SN 178 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS--CC
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC--CC
Confidence 4678999999999999 489999999999873 233467888889999999994 899999988886531 11
Q ss_pred cHHHHHHHHHHHHHHHHcCC------------ChHHHHHHHHHHHHhHH
Q 002424 783 DLLKASATLTLAELWLSFGP------------NHAKMASNLIQQALPLI 819 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~------------~~~~~Al~lLe~aLp~v 819 (924)
..|....+.+...++. ..++++++.+.+++...
T Consensus 179 ----~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~ 223 (331)
T 3dss_A 179 ----YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 223 (331)
T ss_dssp ----HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS
T ss_pred ----HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC
Confidence 1344455555555521 12378888888887653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=2.2 Score=46.88 Aligned_cols=153 Identities=9% Similarity=-0.042 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHcc-CHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcC-CHHHHHHHHHHHhhhhhccCCCCc
Q 002424 626 LAHVKLIQHLAVFK-GYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG-HLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 626 ~a~~~La~~~a~~G-~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G-~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+....+.++...| .++++++.++.++...|. ...+|.-+-.+ .....+ ++.++.+++.+++.. ||
T Consensus 89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK--ny~aW~hR~wl---L~~l~~~~~~~EL~~~~k~L~~-------dp 156 (349)
T 3q7a_A 89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK--SYQVWHHRLLL---LDRISPQDPVSEIEYIHGSLLP-------DP 156 (349)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC--CHHHHHHHHHH---HHHHCCSCCHHHHHHHHHHTSS-------CT
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC--cHHHHHHHHHH---HHHhcCCChHHHHHHHHHHHHh-------CC
Confidence 56677777777888 599999999999987663 33345444111 111125 889999999999874 33
Q ss_pred chHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCC-------hhhhHH
Q 002424 704 DLKTEASLRHARTLLAANQFS--------EAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN-------AVLGIP 768 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~--------eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~-------~~~Al~ 768 (924)
. -..++..++.++...|.++ ++++.+++++.. ......++..++.+..+.|+ +++++.
T Consensus 157 k-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe 229 (349)
T 3q7a_A 157 K-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELI 229 (349)
T ss_dssp T-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 2 4688999999999999888 899988888763 23446788899999988887 466677
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC
Q 002424 769 YALASLSFCQLLNLDLLKASATLTLAELWLSFGPN 803 (924)
Q Consensus 769 ~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~ 803 (924)
.+.+++.+.- + -..+...+..++...|..
T Consensus 230 ~~~~aI~~~P--~----n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 230 YILKSIHLIP--H----NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHCT--T----CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCC--C----CHHHHHHHHHHHHhcCCC
Confidence 7766665531 1 123444556666666654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.69 E-value=5.8 Score=42.75 Aligned_cols=123 Identities=9% Similarity=-0.031 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
..+..++.-+..+++|++|+++|.... ...+..|++..|-++..-+.......+ .+.
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga--------------------~~ll~~~Q~~sa~DLa~llvev~~~~~--~~~- 90 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGA--------------------LSFLKAKQGGSGTDLIFYLLEVYDLAE--VKV- 90 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------HHHHHTTCHHHHHHHHHHHHHHHHHTT--CCC-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH--------------------HHHHHCCCcchHHHHHHHHHHHHHHcC--CCC-
Confidence 444445555555555555555544433 333455666666665555544433322 111
Q ss_pred HHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHccc-chhHHHHHHHHHHHHHhcCChhhhHHHHH
Q 002424 706 KTEASLRHARTLLAANQFS-EAAAVAHSLFCMCYKFNL-QVENASVLLLLAEIHKKSGNAVLGIPYAL 771 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~-eAl~~l~~aL~~~~~~gd-~~~~a~al~~la~i~~~~G~~~~Al~~l~ 771 (924)
..+...+++.+......-+ +=.+.+++++..+.+.|+ ..|....+..+|..+.+.|++..|..++.
T Consensus 91 ~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 91 DDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 1233444444443322211 125778888888887766 68888999999999999999999998885
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.47 E-value=2.4 Score=45.21 Aligned_cols=85 Identities=11% Similarity=0.071 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc-----CChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 002424 724 SEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS-----GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWL 798 (924)
Q Consensus 724 ~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~-----G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~ 798 (924)
.+|...+++++++ ........++..+|.+|... |++++|..++.+|+++.-..+. .+....|+.++
T Consensus 180 ~~A~a~lerAleL----DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~i-----d~~v~YA~~l~ 250 (301)
T 3u64_A 180 HAAVMMLERACDL----WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDP-----DHHITYADALC 250 (301)
T ss_dssp HHHHHHHHHHHHH----CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCS-----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh----CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCc-----hHHHHHHHHHH
Confidence 4555556666553 55556777899999999995 9999999999999999753223 45566777776
Q ss_pred H-cCCChHHHHHHHHHHHHhHH
Q 002424 799 S-FGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 799 ~-lG~~~~~~Al~lLe~aLp~v 819 (924)
. .|+. ++|.++++++|..-
T Consensus 251 ~~~gd~--~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 251 IPLNNR--AGFDEALDRALAID 270 (301)
T ss_dssp TTTTCH--HHHHHHHHHHHHCC
T ss_pred HhcCCH--HHHHHHHHHHHcCC
Confidence 6 4887 99999999997643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=9.5 Score=41.49 Aligned_cols=154 Identities=10% Similarity=-0.114 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcC--CHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHH
Q 002424 641 YKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG--HLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL 718 (924)
Q Consensus 641 y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G--~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~ 718 (924)
+++++..++.+....|. ...+|.-+- ......| +|.++..++.+++.+ ||. -..++..++.++.
T Consensus 90 l~~EL~~~~~~L~~~PK--ny~aW~hR~----wlL~~l~~~~~~~EL~~~~k~l~~-------dpr-Ny~AW~~R~~vl~ 155 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK--SYGTWHHRC----WLLSRLPEPNWARELELCARFLEA-------DER-NFHCWDYRRFVAA 155 (331)
T ss_dssp HHHHHHHHHHHHHHCTT--CHHHHHHHH----HHHHHCSSCCHHHHHHHHHHHHHH-------CTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHH----HHHhccCcccHHHHHHHHHHHHHh-------CCC-CHHHHHHHHHHHH
Confidence 78899999988877653 333454431 1112345 599999999999985 332 4788999999999
Q ss_pred HcCC-HHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc--------------CChhhhHHHHHHHHHHHHHhCCc
Q 002424 719 AANQ-FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS--------------GNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 719 ~~G~-~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~--------------G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
..|. ++++++.+..++.. ......++..++.+.... +.+.+++..+.+++.+.-. +.
T Consensus 156 ~l~~~~~eel~~~~~~I~~------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~--d~ 227 (331)
T 3dss_A 156 QAAVAPAEELAFTDSLITR------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN--DQ 227 (331)
T ss_dssp HTTCCHHHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT--CH
T ss_pred HhCcCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC--CH
Confidence 9999 69999999998873 223355666666666655 4467788888888766421 11
Q ss_pred HHHHHHHHHHHHHHH-HcCCC--------hHHHHHHHHHHHHhHHH
Q 002424 784 LLKASATLTLAELWL-SFGPN--------HAKMASNLIQQALPLIL 820 (924)
Q Consensus 784 ~~~A~al~~La~l~~-~lG~~--------~~~~Al~lLe~aLp~vl 820 (924)
.+...+..++. ..|.. ..+++++.+++++..--
T Consensus 228 ----SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 228 ----SAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp ----HHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ----HHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 22222222222 23421 23778887777776643
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.81 E-value=0.17 Score=58.24 Aligned_cols=197 Identities=13% Similarity=0.025 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHH---cccchhHHHHHHHHHHHHHhcCChhh----------hHHH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLF--CMCYK---FNLQVENASVLLLLAEIHKKSGNAVL----------GIPY 769 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL--~~~~~---~gd~~~~a~al~~la~i~~~~G~~~~----------Al~~ 769 (924)
......+.....++..++|++|.++...+. ..... .......++++.-.+.+|...|+... -++.
T Consensus 134 ~~~y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~ 213 (523)
T 4b4t_S 134 INCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRST 213 (523)
T ss_dssp ---------------------------------------------------------------------CHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHH
Confidence 344555566666788999999999887665 22221 12223456677766777777776543 2556
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCC
Q 002424 770 ALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQ 849 (924)
Q Consensus 770 l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g 849 (924)
+..++..|.-.++....|..+..|-..+++.+.. ++|..++..+- ......+-.+.++.++.+||++.. .+
T Consensus 214 Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y--~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~------q~ 284 (523)
T 4b4t_S 214 MMKFLKIASLKHDNETKAMLINLILRDFLNNGEV--DSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAI------QL 284 (523)
T ss_dssp HHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCS--TTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHH------TT
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHccCcH--HHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHH------hc
Confidence 7788888888888889999999999999999998 99999999883 112234667789999999999999 89
Q ss_pred ChHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhcCCHHHHHH--------HHHHHHHHHHhhhc
Q 002424 850 NPEAVLDPLRQASEELQVLE-DHELAAEAFYLIAIVFDKLGRLAEREE--------AAALFKEYVLALEN 910 (924)
Q Consensus 850 ~~~~Al~~L~~A~~~f~~l~-~~~~~~~vl~~lA~l~~~lGd~~~r~~--------aa~~f~~l~~~~~~ 910 (924)
++.+|.++|.+|+...-.-. ...-...++-.+-.+---+|+.+.+.- +..-|-.+..++.+
T Consensus 285 ~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Avr~ 354 (523)
T 4b4t_S 285 DYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAVKL 354 (523)
T ss_dssp CHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHHHc
Confidence 99999999999975331111 222223333333333334566554332 33445555555544
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=91.63 E-value=2.1 Score=49.51 Aligned_cols=89 Identities=8% Similarity=0.000 Sum_probs=46.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..+...|++++|..+++++... .+ .|. ..+...+...+.+.|+.++|.++++++... |-. ........
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~--g~---~Pd--~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----G~~-Pd~~ty~~ 180 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAF--GI---QPR--LRSYGPALFGFCRKGDADKAYEVDAHMVES----EVV-PEEPELAA 180 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHT--TC---CCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCC-CCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHc--CC---CCc--cceehHHHHHHHHCCCHHHHHHHHHHHHhc----CCC-CCHHHHHH
Confidence 3445566666666666666541 11 111 234445555556666666666666665441 221 12223344
Q ss_pred HHHHHHhcCChhhhHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALAS 773 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~A 773 (924)
+-..+.+.|+.++|+..+.+-
T Consensus 181 Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 181 LLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHH
Confidence 444556666666666665543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=91.36 E-value=0.55 Score=41.12 Aligned_cols=66 Identities=18% Similarity=0.046 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Q 002424 707 TEASLRHARTLLAANQ---FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~---~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~ 778 (924)
++++...|.++...++ .++|...+++++.. .....++++.+|.++...|+|.+|+..+.+.+...-
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5778888888877776 79999999999984 344578899999999999999999999998876543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=91.13 E-value=1.6 Score=51.25 Aligned_cols=157 Identities=8% Similarity=-0.080 Sum_probs=110.1
Q ss_pred HccC-HHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCC----------HHHHHHHHHHHhhhhhccCCCCcch
Q 002424 637 VFKG-YKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGH----------LKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 637 ~~G~-y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~----------~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
..|+ .++|++.++.+...-|.. ..+|..+- ......|+ +.+|.+.+.+++...+ .
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~--~taW~~R~----~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-------K- 105 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDF--ATLWNCRR----EVLQHLETEKSPEESAALVKAELGFLESCLRVNP-------K- 105 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTC--HHHHHHHH----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-------T-
T ss_pred HcCCCCHHHHHHHHHHHHHCchh--HHHHHHHH----HHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-------C-
Confidence 4455 467788888888775532 23454431 12223344 9999999999988632 2
Q ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcC-ChhhhHHHHHHHHHHHHHhCC
Q 002424 706 KTEASLRHARTLLAAN--QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG-NAVLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G--~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G-~~~~Al~~l~~AL~la~~~g~ 782 (924)
-..++..++.++...| ++++|++.++++++. | .....++..++.+....| .+++++.++.+++..--
T Consensus 106 ~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~-----d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p---- 175 (567)
T 1dce_A 106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEA-----D-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF---- 175 (567)
T ss_dssp CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH-----C-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC----
T ss_pred CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh-----c-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC----
Confidence 4688999999999999 779999999999984 2 234778899999999999 88889999888776431
Q ss_pred cHHHHHHHHHHHHHHHHcCC------------ChHHHHHHHHHHHHhHH
Q 002424 783 DLLKASATLTLAELWLSFGP------------NHAKMASNLIQQALPLI 819 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~------------~~~~~Al~lLe~aLp~v 819 (924)
.-..|....+.++..++. ..+++|++.+++++..-
T Consensus 176 --~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 176 --SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp --CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred --CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC
Confidence 112455566666665421 13488898888887654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=90.28 E-value=0.83 Score=40.42 Aligned_cols=69 Identities=14% Similarity=-0.037 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 748 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN-LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 748 ~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g-~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
.--+.+|.++...|++..|...+.+|+....... .....+.++..||.++..+|.. +.|+.++++++..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~--~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL--DKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH--HHHHHHHHHHHhc
Confidence 3446789999999999999999999998875432 1334567788999999999998 9999999999765
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.10 E-value=23 Score=38.08 Aligned_cols=181 Identities=10% Similarity=0.020 Sum_probs=122.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 002424 715 RTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLA 794 (924)
Q Consensus 715 ~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La 794 (924)
+-.+..|+|=||..+++.......+.+.....+..+..-|..+.+.|+...|-.++.--++.-.+.+.+.... .+.+|.
T Consensus 21 ~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~-~~~rl~ 99 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDI-SVARLV 99 (312)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHH-HHHHHH
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Confidence 3346788888998888877665555555555567788888888899999999888777777777777766544 445577
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhHHHhhCC-HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH------------HH
Q 002424 795 ELWLSFGPNHAKMASNLIQQALPLILGHGG-LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR------------QA 861 (924)
Q Consensus 795 ~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd-~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~------------~A 861 (924)
.+...+...+ ..=.+.+++++-+....|+ ..+--..+..+|..+.. .+++.+|..++- -=
T Consensus 100 ~l~~~~p~~~-~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~------e~~~~~A~~H~i~~~~~s~~~~a~~l 172 (312)
T 2wpv_A 100 RLIAELDPSE-PNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLE------GDFVYEAERYFMLGTHDSMIKYVDLL 172 (312)
T ss_dssp HHHTTCCTTC-TTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHH------TTCHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHCCCCC-chHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhh------cCCHHHHHHHHHhCCCccHHHHHHHH
Confidence 8776655431 1236788888888876644 44445667788888888 677777777662 11
Q ss_pred HHHHHhh--cCHHHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHH
Q 002424 862 SEELQVL--EDHELAAEAFYLIAI-VFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 862 ~~~f~~l--~~~~~~~~vl~~lA~-l~~~lGd~~~r~~aa~~f~~l 904 (924)
.+++.+. +.+ .+.+.+...|. -|..+|+...|+.+...|.+-
T Consensus 173 ~~w~~~~~~~~~-~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 173 WDWLCQVDDIED-STVAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHTTCCCH-HHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2333332 443 45566655554 456889999988887777654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.27 E-value=1.5 Score=49.65 Aligned_cols=98 Identities=15% Similarity=-0.091 Sum_probs=63.2
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 753 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~l 753 (924)
.+...|++..|..++.++....... ....+..+...++.+..||+..+...++++.......+++....+.....
T Consensus 140 ~~~~~Gd~~~A~~~~~~~~~~~~~~-----~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~ 214 (429)
T 4b4t_R 140 YYAQIGDKDNAEKTLGKSLSKAIST-----GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY 214 (429)
T ss_dssp HHHHHCCCTTHHHHHHHHHHHHTCC-----CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCh-----HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 3445555555555555555432211 22667777777777777777777777777776666666666666666667
Q ss_pred HHHHHhcCChhhhHHHHHHHHHH
Q 002424 754 AEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 754 a~i~~~~G~~~~Al~~l~~AL~l 776 (924)
|.++...++|..|..++.++..-
T Consensus 215 gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 215 GIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHHHhcc
Confidence 77777777777777777665543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=87.43 E-value=1.4 Score=38.44 Aligned_cols=48 Identities=13% Similarity=-0.037 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 681 LKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 681 ~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
..+|..++++++.+ ||. ...++..+|..+...|+|.+|++.++++++.
T Consensus 25 ~~~A~~~l~~AL~~-------dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQL-------EPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHH-------CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHH-------CcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 79999999999997 333 5688999999999999999999999999873
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=87.14 E-value=4.4 Score=48.77 Aligned_cols=185 Identities=16% Similarity=0.031 Sum_probs=104.1
Q ss_pred HHHHHHccCHHHHHH-HHHHHHHHhhccC-chHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHH
Q 002424 632 IQHLAVFKGYKEAFS-ALKIAEEKFLSVS-KSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEA 709 (924)
Q Consensus 632 a~~~a~~G~y~eA~~-~L~~a~~~f~~~~-~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a 709 (924)
.......|+|++|.. .+. ... ......+. ...-..|.+++|.+..+ |+...
T Consensus 606 ~~~~~~~~~~~~a~~~~l~-------~i~~~~~~~~~~-----~~l~~~~~~~~a~~~~~------------~~~~~--- 658 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLP-------NVEGKDSLTKIA-----RFLEGQEYYEEALNISP------------DQDQK--- 658 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGG-------GCCCHHHHHHHH-----HHHHHTTCHHHHHHHCC------------CHHHH---
T ss_pred HhHHHHhCCHHHHHHHHHh-------cCCchHHHHHHH-----HHHHhCCChHHheecCC------------Ccchh---
Confidence 555556788888866 441 122 11111111 23346777777764331 43222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHH
Q 002424 710 SLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASA 789 (924)
Q Consensus 710 ~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~a 789 (924)
-.+.+..|++++|++.+... .+ -..+..+|+...+.|+++.|...+.++-....
T Consensus 659 ----f~~~l~~~~~~~A~~~~~~~-------~~----~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~----------- 712 (814)
T 3mkq_A 659 ----FELALKVGQLTLARDLLTDE-------SA----EMKWRALGDASLQRFNFKLAIEAFTNAHDLES----------- 712 (814)
T ss_dssp ----HHHHHHHTCHHHHHHHHTTC-------CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHH-----------
T ss_pred ----eehhhhcCCHHHHHHHHHhh-------Cc----HhHHHHHHHHHHHcCCHHHHHHHHHHccChhh-----------
Confidence 23456789999998876532 11 35778899999999999999988876644432
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH------HHHH
Q 002424 790 TLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR------QASE 863 (924)
Q Consensus 790 l~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~------~A~~ 863 (924)
+..++...|.. +. +..+.......|+......++. . .|++++|++.+. +|+.
T Consensus 713 ---l~~l~~~~~~~--~~----~~~~~~~a~~~~~~~~A~~~~~-------~------~g~~~~a~~~~~~~~~~~~A~~ 770 (814)
T 3mkq_A 713 ---LFLLHSSFNNK--EG----LVTLAKDAETTGKFNLAFNAYW-------I------AGDIQGAKDLLIKSQRFSEAAF 770 (814)
T ss_dssp ---HHHHHHHTTCH--HH----HHHHHHHHHHTTCHHHHHHHHH-------H------HTCHHHHHHHHHHTTCHHHHHH
T ss_pred ---hHHHHHHcCCH--HH----HHHHHHHHHHcCchHHHHHHHH-------H------cCCHHHHHHHHHHcCChHHHHH
Confidence 44445557765 33 2333444455555544333322 2 356666666554 5666
Q ss_pred HHHhhcCHH-HHHHHHHHHHHHHHhcCCH
Q 002424 864 ELQVLEDHE-LAAEAFYLIAIVFDKLGRL 891 (924)
Q Consensus 864 ~f~~l~~~~-~~~~vl~~lA~l~~~lGd~ 891 (924)
.+++.+... ...++...-+.-....|+.
T Consensus 771 lA~~~~~~~~~i~~~~~~~~~~L~~~~~~ 799 (814)
T 3mkq_A 771 LGSTYGLGDNEVNDIVTKWKENLILNGKN 799 (814)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHhccch
Confidence 666655433 2455555555555555553
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.06 E-value=9.3 Score=42.41 Aligned_cols=125 Identities=15% Similarity=-0.007 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
.++.-|......|+.++|.+.+++|+..|+..--.. +..+.|..+.. .++.. ..
T Consensus 117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~-------------~~~~~w~~~~r--~~l~~-----------~~ 170 (388)
T 2ff4_A 117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD-------------LRDFQFVEPFA--TALVE-----------DK 170 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG-------------GTTSTTHHHHH--HHHHH-----------HH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC-------------CCchhHHHHHH--HHHHH-----------HH
Confidence 344445555567899999999999988875321110 01122222211 11111 13
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH-HHHhCCc
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF-CQLLNLD 783 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l-a~~~g~~ 783 (924)
..+...++..+.+.|++.+|+..+..++. .++..+ +++..+-.++.++|+...|+..+.++-.. ..+.|..
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~-----~~P~~E-~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~ 242 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTF-----EHPYRE-PLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 242 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HSTTCH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34555677778899999999988888766 333332 13334444578999999999888776653 3555543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.49 E-value=6.9 Score=37.55 Aligned_cols=50 Identities=10% Similarity=0.060 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHhhhhhccCCCC-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 680 HLKLAQKVCDELGVMASSVTGVD-MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 680 ~~~~A~~~l~~ll~l~~~~~~~D-~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
+..++..+++.+... | |....++++.+|..+.+.|+|++|+++++.+++.
T Consensus 50 ~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 50 DIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 677888888888773 3 5567899999999999999999999999999984
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.80 E-value=26 Score=34.35 Aligned_cols=49 Identities=20% Similarity=0.174 Sum_probs=40.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002424 672 HERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSL 733 (924)
Q Consensus 672 ~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~a 733 (924)
|..++..|+++.|.++++.+. ....+..+|+.-+..|+++-|.+++.++
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~-------------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN-------------DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHhC-------------CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 478899999999999877652 2356888999999999999999998865
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=80.39 E-value=69 Score=34.65 Aligned_cols=179 Identities=14% Similarity=0.064 Sum_probs=111.1
Q ss_pred HHHcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHH
Q 002424 717 LLAANQF---SEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTL 793 (924)
Q Consensus 717 l~~~G~~---~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~L 793 (924)
.+..|+| =||..+++.........+.....+.++..-|..+.+.|+...|-++..--++.-.+.+.+.-. ..+.+|
T Consensus 22 ~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~-~~~~rL 100 (336)
T 3lpz_A 22 RIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDG-ASRGKL 100 (336)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHH
T ss_pred HHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHHH
Confidence 3567777 777777776655444444444456667777777888888888877776666666666554433 455668
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhHHHhhCC-HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHH------------HH
Q 002424 794 AELWLSFGPNHAKMASNLIQQALPLILGHGG-LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPL------------RQ 860 (924)
Q Consensus 794 a~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd-~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L------------~~ 860 (924)
..+...+...+.++ ..++.+++-+...+|+ ...--..+..+|..+.. .+++.+|..++ +-
T Consensus 101 ~~L~~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~------e~~~~~Ae~H~ilg~~~s~~~~a~m 173 (336)
T 3lpz_A 101 LGCLRLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVE------EGEFEAAEKHLVLGTKESPEVLARM 173 (336)
T ss_dssp HHHHTTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHH------TTCHHHHHHHHTTSCTTHHHHHHHH
T ss_pred HHHHHhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc------cCCHHHHHHHHHhcCCchHHHHHHH
Confidence 88877776543233 6678888888876542 22333445567777777 45555554443 11
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHH
Q 002424 861 ASEELQVLEDHELAAEAFYLIAIV-FDKLGRLAEREEAAALFKEYV 905 (924)
Q Consensus 861 A~~~f~~l~~~~~~~~vl~~lA~l-~~~lGd~~~r~~aa~~f~~l~ 905 (924)
=.+++.+.+ ..+.+.+...|.+ |..+|+...|+.+...|...-
T Consensus 174 L~ew~~~~~--~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 174 EYEWYKQDE--SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp HHHHHHTSC--GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC--CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 122333222 3455666666554 578899999998888887653
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=80.36 E-value=32 Score=37.28 Aligned_cols=115 Identities=12% Similarity=0.059 Sum_probs=71.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
.|++..++|++|.+++. .-+..++..|++..|.++..-+++...+.+..... .....
T Consensus 43 ~Ry~~~k~y~eAidLL~----------------------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~-~~~~r 99 (336)
T 3lpz_A 43 ARYSKQGNWAAAVDILA----------------------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDG-ASRGK 99 (336)
T ss_dssp HHHHHTTCHHHHHHHHH----------------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH-HHHHH
T ss_pred HHHHhhcCHHHHHHHHH----------------------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHH
Confidence 45666677776665444 34445567788888888777777666665544433 34444
Q ss_pred HHHHHHhcCChhhh-HHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLG-IPYALASLSFCQLLN-LDLLKASATLTLAELWLSFGPNHAKMASNLI 812 (924)
Q Consensus 753 la~i~~~~G~~~~A-l~~l~~AL~la~~~g-~~~~~A~al~~La~l~~~lG~~~~~~Al~lL 812 (924)
+..++.....-+.. ...+.+|+..+.++| .+.+.......+|.++..-|.. .+|..++
T Consensus 100 L~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~--~~Ae~H~ 159 (336)
T 3lpz_A 100 LLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEF--EAAEKHL 159 (336)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCH--HHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCH--HHHHHHH
Confidence 55555555433222 446667888887765 3555556666788888777765 7777765
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=80.09 E-value=28 Score=39.71 Aligned_cols=117 Identities=12% Similarity=-0.030 Sum_probs=51.9
Q ss_pred HcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Q 002424 677 HRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAAN-QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAE 755 (924)
Q Consensus 677 ~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G-~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~ 755 (924)
+.|+.+.|+.++.++ .. +. ....+....+.+-...| +.+.|...++.++..+. +. ...++..+.
T Consensus 298 r~~~~~~AR~i~~~A-~~-~~-------~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~---~~---~~~~~~yid 362 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GN-EG-------VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP---DS---TLLKEEFFL 362 (493)
T ss_dssp HHHCHHHHHHHHHHH-TT-SC-------CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT---TC---HHHHHHHHH
T ss_pred HcCCHHHHHHHHHHh-hC-CC-------CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC---CC---HHHHHHHHH
Confidence 344566666666655 21 10 01223333344443333 46666666666655321 11 112222344
Q ss_pred HHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 756 IHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 756 i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
.....|+..+|...+.++.. ...........-...|.. +.++.+++++++.+.
T Consensus 363 ~e~~~~~~~~aR~l~er~~k----------~~~lw~~~~~fE~~~G~~--~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLEK----------TSRMWDSMIEYEFMVGSM--ELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSCC----------BHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHhc
Confidence 44555666666555555410 011112222223334655 666666666666544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 924 | |||
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.6 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.56 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.55 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.43 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.37 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.22 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.16 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.91 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.63 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.42 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.39 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.38 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.36 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.14 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.08 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.03 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.01 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.0 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 97.8 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.8 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.79 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.75 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.75 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.73 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.69 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.66 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.63 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.58 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.56 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.49 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.44 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.44 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.43 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.41 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.33 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.25 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.19 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 97.18 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.14 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 97.11 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.0 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.75 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.75 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 96.59 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.54 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 96.5 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.36 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 96.03 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.99 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 94.94 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.88 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 91.44 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 87.61 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 85.61 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 85.06 |
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=1.4e-12 Score=138.92 Aligned_cols=309 Identities=13% Similarity=0.018 Sum_probs=248.7
Q ss_pred hhhHHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHH
Q 002424 584 VGSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI 663 (924)
Q Consensus 584 ~g~~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~ 663 (924)
-+....+++.+--.-|...-+.-...-.+... +..+....+.++..+|.++...|+|++|...++++.+..+..++...
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 89 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 89 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence 34556777887777888776655554444433 23344456788999999999999999999999999998887776543
Q ss_pred HHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 002424 664 LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ 743 (924)
Q Consensus 664 ~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~ 743 (924)
...........+...|++..|...+.+++.+.......+....+.+...++.++...|+++.|...+..++......+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 169 (366)
T d1hz4a_ 90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 169 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence 33222222267889999999999999999887766544555567788889999999999999999999998877665544
Q ss_pred hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh
Q 002424 744 VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD-LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH 822 (924)
Q Consensus 744 ~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~-~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~ 822 (924)
....++...+.++...|.+..+...+.++..+....+.. ...+.+...++.++...|.. ++|...+++++......
T Consensus 170 -~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~~~~~~ 246 (366)
T d1hz4a_ 170 -QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK--AAAANWLRHTAKPEFAN 246 (366)
T ss_dssp -GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHSCCCCCTT
T ss_pred -hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHhcccc
Confidence 456788899999999999999999999999999777664 45566778889999999998 99999999988764433
Q ss_pred CCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002424 823 GGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFK 902 (924)
Q Consensus 823 gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~ 902 (924)
.......+..+|+++.. .|++.+|+.++++|+..++..+......+++..+|.+|...|+.+++.++.....
T Consensus 247 --~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 247 --NHFLQGQWRNIARAQIL------LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp --CGGGHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34556677889999999 8999999999999999999999999999999999999999999999887655544
Q ss_pred HH
Q 002424 903 EY 904 (924)
Q Consensus 903 ~l 904 (924)
.+
T Consensus 319 ~l 320 (366)
T d1hz4a_ 319 KL 320 (366)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=2.1e-11 Score=129.52 Aligned_cols=340 Identities=14% Similarity=0.033 Sum_probs=236.8
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhCChHHHHHHHHHHH
Q 002424 319 HRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAV 398 (924)
Q Consensus 319 ~~~~~l~~L~~~~~~dy~~A~d~Lh~yFD~~~~~~~~~r~~~~~~~~~~~~~~yall~la~~h~~fg~~~~A~~~l~Eai 398 (924)
++.+.++---.+..|||..|++.+.+..+.... +.....-.++.++|.+|...|++++|+..+++++
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~-------------~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 78 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPP-------------GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 78 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC-------------CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 356788888889999999999999998887531 1112334588899999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHhcccCcccCcCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 002424 399 CLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHL 478 (924)
Q Consensus 399 ~~Aqe~~D~~cl~~~l~wl~~l~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~~q~l~lL~~~~~ra~e~~~~~L~s~~~l 478 (924)
.++...+|..-...++.++.......+. ..++...+............+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~a~~~~~~al~~~~~~~~~~~------ 129 (366)
T d1hz4a_ 79 QMARQHDVWHYALWSLIQQSEILFAQGF-----------------------LQTAWETQEKAFQLINEQHLEQL------ 129 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------------------HHHHHHHHHHHHHHHHHTTCTTS------
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHhHhcccchh------
Confidence 9999999998887777777766655442 13444444432222221110000
Q ss_pred HHHHHHhhccCCCCccCCCcccccccCCchhHHHHHHhhhhcccccccccccccCCCccchHHhhhccCCCCcchhhhcc
Q 002424 479 AMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESSTMTTDGAFSTSWLKNLQKPMGSLVLTQEN 558 (924)
Q Consensus 479 ~~ak~~l~~g~~~~~~~g~~~~~~~~~~~a~~~e~l~~~~~l~~d~~~~~~~~~~~g~~~~~~l~nl~~~~~~~~~~~~~ 558 (924)
+.
T Consensus 130 ----------------------------~~-------------------------------------------------- 131 (366)
T d1hz4a_ 130 ----------------------------PM-------------------------------------------------- 131 (366)
T ss_dssp ----------------------------TH--------------------------------------------------
T ss_pred ----------------------------hH--------------------------------------------------
Confidence 00
Q ss_pred ccCCCccccccccCCCCcchhhhhhhhhHHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHc
Q 002424 559 VSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVF 638 (924)
Q Consensus 559 ~~~~~~~~~~~~~q~~~~~~~l~~l~g~~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~ 638 (924)
.+......+.++...|...-+........... ..........++..++..+...
T Consensus 132 -------------------------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 185 (366)
T d1hz4a_ 132 -------------------------HEFLVRIRAQLLWAWARLDEAEASARSGIEVL-SSYQPQQQLQCLAMLIQCSLAR 185 (366)
T ss_dssp -------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTSCGGGGHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHhcchhhhHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHHHhh
Confidence 00011112223333333333333222222222 2223344567788889999999
Q ss_pred cCHHHHHHHHHHHHHHhhccCchHHHHHH-HhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHH
Q 002424 639 KGYKEAFSALKIAEEKFLSVSKSRILLLK-LQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTL 717 (924)
Q Consensus 639 G~y~eA~~~L~~a~~~f~~~~~~~~~~l~-l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll 717 (924)
|++.++...+.++...+............ .......+...|++.+|...+.++....+ .++........+++.++
T Consensus 186 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 186 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF----ANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC----TTCGGGHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc----ccchHHHHHHHHHHHHH
Confidence 99999999999999988877654322111 12222677889999999999998876532 24445667788899999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHH---HHHHHHHH
Q 002424 718 LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK---ASATLTLA 794 (924)
Q Consensus 718 ~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~---A~al~~La 794 (924)
...|++++|...+++++..++..++....+.++..+|.+|...|++++|+..+.+|+.++.+.|..... ...+..+.
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~ 341 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQL 341 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998875432 23334444
Q ss_pred HHHHHcCCChHHHHHH
Q 002424 795 ELWLSFGPNHAKMASN 810 (924)
Q Consensus 795 ~l~~~lG~~~~~~Al~ 810 (924)
..+...|.. .++..
T Consensus 342 ~~l~~~~~l--~e~e~ 355 (366)
T d1hz4a_ 342 RQLIQLNTL--PELEQ 355 (366)
T ss_dssp HHHHHTTCS--CHHHH
T ss_pred HHHHhcCCC--hHHHH
Confidence 555566765 44443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=4e-12 Score=137.14 Aligned_cols=220 Identities=14% Similarity=0.013 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..+..++|..+...|.+++|...++.+.+..|.... .+. .+ +..+...|++++|...+.+...+.+ +
T Consensus 169 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~---~l-~~~~~~~~~~~~A~~~~~~~~~~~~-----~-- 235 (388)
T d1w3ba_ 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD--AYI---NL-GNVLKEARIFDRAVAAYLRALSLSP-----N-- 235 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH--HHH---HH-HHHHHTTTCTTHHHHHHHHHHHHCT-----T--
T ss_pred hHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHH--HHH---HH-hhhhhccccHHHHHHHHHHhHHHhh-----h--
Confidence 467888999999999999999999999987653222 111 11 1577789999999999999887522 1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
.......+|.++...|++++|++.++++++.. .....++..+|.++...|++..|+..+..++....
T Consensus 236 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------ 302 (388)
T d1w3ba_ 236 -HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP------ 302 (388)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT------
T ss_pred -HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC------
Confidence 45778889999999999999999999998742 22366888999999999999999999988776532
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
....+...++.++...|+. ++|+..+++++..-- .-+.+++.+|.++.. .|++++|+.++++|++.
T Consensus 303 ~~~~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~p------~~~~~~~~la~~~~~------~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 303 THADSLNNLANIKREQGNI--EEAVRLYRKALEVFP------EFAAAHSNLASVLQQ------QGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCH--HHHHHHHHHHTTSCT------TCHHHHHHHHHHHHT------TTCCHHHHHHHHHHHTT
T ss_pred ccchhhhHHHHHHHHCCCH--HHHHHHHHHHHHhCC------CCHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHh
Confidence 2345667899999999998 999999999976421 236788999999999 89999999999999875
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhcCC
Q 002424 865 LQVLEDHELAAEAFYLIAIVFDKLGR 890 (924)
Q Consensus 865 f~~l~~~~~~~~vl~~lA~l~~~lGd 890 (924)
. | .-.+++..+|.++..+||
T Consensus 369 ~-----P-~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 369 S-----P-TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp C-----T-TCHHHHHHHHHHHHHTCC
T ss_pred C-----C-CCHHHHHHHHHHHHHcCC
Confidence 3 2 235688999999999987
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.5e-10 Score=124.41 Aligned_cols=211 Identities=18% Similarity=0.062 Sum_probs=156.2
Q ss_pred HHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhh
Q 002424 591 RATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQL 670 (924)
Q Consensus 591 ~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l 670 (924)
.+..+...|...-+.......+....+ ...++.++|..+...|+|++|...++.+....+..... ...+.
T Consensus 175 l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~l~--- 244 (388)
T d1w3ba_ 175 LGCVFNAQGEIWLAIHHFEKAVTLDPN------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV-HGNLA--- 244 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH-HHHHH---
T ss_pred hcccccccCcHHHHHHHHHHHHHhCcc------cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHH-HHHHH---
Confidence 344445555554444433322332211 14578899999999999999999999888765422111 11112
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHH
Q 002424 671 LHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVL 750 (924)
Q Consensus 671 ~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al 750 (924)
..+...|++.+|...+++++.+.+ . ...++..+|.++...|++.+|++.++.++... .....++
T Consensus 245 --~~~~~~~~~~~A~~~~~~al~~~p-------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~ 308 (388)
T d1w3ba_ 245 --CVYYEQGLIDLAIDTYRRAIELQP-------H-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC------PTHADSL 308 (388)
T ss_dssp --HHHHHTTCHHHHHHHHHHHHHTCS-------S-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC------TTCHHHH
T ss_pred --HHHHHCCCHHHHHHHHHHHHHhCC-------C-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC------Cccchhh
Confidence 567789999999999999988632 1 35778899999999999999999999887642 2346678
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHH
Q 002424 751 LLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRAR 830 (924)
Q Consensus 751 ~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~ 830 (924)
..+|.++...|++++|+..+.+++++.-. .+.++..+|.++..+|+. ++|+..+++++..- . .-+.
T Consensus 309 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~--~~A~~~~~~al~l~----P--~~~~ 374 (388)
T d1w3ba_ 309 NNLANIKREQGNIEEAVRLYRKALEVFPE------FAAAHSNLASVLQQQGKL--QEALMHYKEAIRIS----P--TFAD 374 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTT------CHHHHHHHHHHHHTTTCC--HHHHHHHHHHHTTC----T--TCHH
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC----C--CCHH
Confidence 89999999999999999999999876421 356788999999999999 99999999997641 1 2256
Q ss_pred HHHHHHHhhhc
Q 002424 831 AFIAEAKCLLS 841 (924)
Q Consensus 831 a~~~LAr~~la 841 (924)
++..||+++..
T Consensus 375 a~~~lg~~~~~ 385 (388)
T d1w3ba_ 375 AYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78889988876
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.37 E-value=1e-11 Score=132.35 Aligned_cols=217 Identities=13% Similarity=0.050 Sum_probs=174.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..+...|+|++|...+.++..+....+ |+...+.++.+.|.++...|++++|++.+++++.++...+.....+.++..
T Consensus 45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~--~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 45 TIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 345578899999999999998877666 666788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-cCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCC-HHHHHH
Q 002424 753 LAEIHKK-SGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG-LELRAR 830 (924)
Q Consensus 753 la~i~~~-~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd-~~~~A~ 830 (924)
+|.++.. .|+++.|+..+.+|+.+....+.+...+.+...+|.++..+|.. ++|+..+++++......+. ......
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y--~~A~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY--IEASDIYSKLIKSSMGNRLSQWSLKD 200 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChH--HHHHHHHHHHHHhCccchhhhhhHHH
Confidence 9999854 69999999999999999999999999999999999999999987 9999999999887665543 334445
Q ss_pred HHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002424 831 AFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 901 (924)
Q Consensus 831 a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f 901 (924)
.+...+.|++. .|++..|...++++.+......+ ..+...+..+..++.. |+.+.-.++...|
T Consensus 201 ~~~~~~~~~l~------~~d~~~A~~~~~~~~~~~~~~~~-sre~~~l~~l~~a~~~-~d~e~~~eai~~y 263 (290)
T d1qqea_ 201 YFLKKGLCQLA------ATDAVAAARTLQEGQSEDPNFAD-SRESNFLKSLIDAVNE-GDSEQLSEHCKEF 263 (290)
T ss_dssp HHHHHHHHHHH------TTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHT-TCTTTHHHHHHHH
T ss_pred HHHHHHHHHHH------hccHHHHHHHHHHHHHhCCCccc-hHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 67788889998 89999999999999877655443 2334556666666655 4544444444444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.22 E-value=2.5e-10 Score=121.25 Aligned_cols=185 Identities=10% Similarity=-0.065 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 788 (924)
.....|.++...|+|++|++.+.+++.++...++....+.++..+|.+|...|++..|+..+.+|+.+....+.....+.
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 34444667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 002424 789 ATLTLAELWLS-FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 867 (924)
Q Consensus 789 al~~La~l~~~-lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~ 867 (924)
++..+|.++.. +|++ ++|+.++++++.+....++....+.++..+|.++.. .|++.+|+.+++++...+..
T Consensus 119 ~~~~l~~~~~~~~~~~--~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~------~g~y~~A~~~~~~~~~~~~~ 190 (290)
T d1qqea_ 119 FKFELGEILENDLHDY--AKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL------DGQYIEASDIYSKLIKSSMG 190 (290)
T ss_dssp HHHHHHHHHHHTTCCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhHhhHHHHH--HHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH------cChHHHHHHHHHHHHHhCcc
Confidence 99999999854 7988 999999999999999999999999999999999999 99999999999999998876
Q ss_pred hcC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002424 868 LED-HELAAEAFYLIAIVFDKLGRLAEREEAAALF 901 (924)
Q Consensus 868 l~~-~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f 901 (924)
... ....+..+...+.++...|+...+..+...+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~ 225 (290)
T d1qqea_ 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (290)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred chhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 653 4456677788889999999998876654443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.4e-09 Score=115.81 Aligned_cols=232 Identities=11% Similarity=-0.009 Sum_probs=151.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHH
Q 002424 629 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 708 (924)
Q Consensus 629 ~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~ 708 (924)
...|..+...|+|++|...++.+.+..|.... .|.. + +..+...|++.+|...+.+++.+.+ . ...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~--a~~~---l-g~~~~~~~~~~~A~~~~~~al~~~p-------~-~~~ 88 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME--AWQY---L-GTTQAENEQELLAISALRRCLELKP-------D-NQT 88 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH--HHHH---H-HHHHHHTTCHHHHHHHHHHHHHHCT-------T-CHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHH---H-HHHHHHcCChHHHHHHHHhhhcccc-------c-ccc
Confidence 35566666666666666666666655543211 1110 1 1455566666666666666666421 1 235
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---------------------------------------------cccc
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYK---------------------------------------------FNLQ 743 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~---------------------------------------------~gd~ 743 (924)
++..+|.++...|++++|++.+++++..... ....
T Consensus 89 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~ 168 (323)
T d1fcha_ 89 ALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT 168 (323)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 5666666666666666666666655432110 0111
Q ss_pred hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhC
Q 002424 744 VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG 823 (924)
Q Consensus 744 ~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~g 823 (924)
...+.++..+|.++...|+++.|+..+.+++.+... .+.+...+|.++..+|.. ++|+..+++++..- -+
T Consensus 169 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~--p~ 238 (323)
T d1fcha_ 169 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------DYLLWNKLGATLANGNQS--EEAVAAYRRALELQ--PG 238 (323)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC--TT
T ss_pred ccccccchhhHHHHHHHHHHhhhhcccccccccccc------cccchhhhhhcccccccc--hhHHHHHHHHHHHh--hc
Confidence 122456788999999999999999999999876421 256788899999999998 99999999998641 12
Q ss_pred CHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHH-----HHHHHHHHHHHhcCCHHHH
Q 002424 824 GLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAA-----EAFYLIAIVFDKLGRLAER 894 (924)
Q Consensus 824 d~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~-----~vl~~lA~l~~~lGd~~~r 894 (924)
-+.++..+|.++.. .|++++|+.++++|+++......+.... .+...++.++..+|+.+..
T Consensus 239 ----~~~a~~~lg~~~~~------~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 239 ----YIRSRYNLGISCIN------LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp ----CHHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred ----cHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 35689999999999 8999999999999999876554433221 2344566677777765543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=2.2e-08 Score=106.28 Aligned_cols=197 Identities=17% Similarity=0.054 Sum_probs=155.7
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++.+|..++++++.. ||. .+.++..+|.++...|++++|+..+.+++.... ....++..
T Consensus 27 ~~~~~~g~~~~A~~~~~~al~~-------~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~ 92 (323)
T d1fcha_ 27 LRRLQEGDLPNAVLLFEAAVQQ-------DPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKP------DNQTALMA 92 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHS-------CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-------CCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc------cccccccc
Confidence 5778999999999999999885 332 467899999999999999999999999987522 23678889
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHH---------------------------------------------HhCCcHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQ---------------------------------------------LLNLDLLKA 787 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~---------------------------------------------~~g~~~~~A 787 (924)
+|.++...|++..|+..+.+++.+.. +.......+
T Consensus 93 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~ 172 (323)
T d1fcha_ 93 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 172 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred ccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999988877664311 111111124
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 002424 788 SATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 867 (924)
Q Consensus 788 ~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~ 867 (924)
.+...+|.++...|+. ++|+..+++++..-- ..+.++..+|.++.. .|++++|+.++++|++.-
T Consensus 173 ~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~------~g~~~~A~~~~~~al~~~-- 236 (323)
T d1fcha_ 173 DVQCGLGVLFNLSGEY--DKAVDCFTAALSVRP------NDYLLWNKLGATLAN------GNQSEEAVAAYRRALELQ-- 236 (323)
T ss_dssp HHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCT------TCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHC--
T ss_pred ccchhhHHHHHHHHHH--hhhhccccccccccc------ccccchhhhhhcccc------cccchhHHHHHHHHHHHh--
Confidence 5677889999999998 999999999876522 236688999999999 899999999999999753
Q ss_pred hcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002424 868 LEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKE 903 (924)
Q Consensus 868 l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~ 903 (924)
..-.++++.+|.+|...|+.+++.++-.....
T Consensus 237 ----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 237 ----PGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp ----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12356899999999999999987665544433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.63 E-value=4.6e-07 Score=92.38 Aligned_cols=225 Identities=9% Similarity=-0.071 Sum_probs=138.9
Q ss_pred ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccC
Q 002424 620 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 620 ~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~ 699 (924)
..+..+.++.++|.++...|+|++|...++.+.++-|... ..+. .+ +..+...|++.+|...+++++.+.+.
T Consensus 32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~--~a~~---~l-g~~~~~~g~~~~A~~~~~~al~~~p~-- 103 (259)
T d1xnfa_ 32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP--EVFN---YL-GIYLTQAGNFDAAYEAFDSVLELDPT-- 103 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHH---HH-HHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH--HHHh---hh-chHHHHHHHHHHhhhhhhHHHHHHhh--
Confidence 4567889999999999999999999999999998866422 2211 11 26788999999999999999997331
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
...+..++|.++...|++++|++.++.++.... ... .....++..+...+....+....... ..
T Consensus 104 ------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 167 (259)
T d1xnfa_ 104 ------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP----NDP--FRSLWLYLAEQKLDEKQAKEVLKQHF----EK 167 (259)
T ss_dssp ------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCH--HHHHHHHHHHHHHCHHHHHHHHHHHH----HH
T ss_pred ------hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc----ccH--HHHHHHHHHHHHhhhHHHHHHHHHHh----hc
Confidence 346789999999999999999999999987522 122 22333444444544433332222111 11
Q ss_pred hCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 002424 780 LNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR 859 (924)
Q Consensus 780 ~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~ 859 (924)
....... ...+...+|..................... ....+.+++.||+++.. .|++++|+.+++
T Consensus 168 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~------~g~~~~A~~~~~ 233 (259)
T d1xnfa_ 168 SDKEQWG------WNIVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLS------LGDLDSATALFK 233 (259)
T ss_dssp SCCCSTH------HHHHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHH------TTCHHHHHHHHH
T ss_pred cchhhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHH------CCCHHHHHHHHH
Confidence 1111110 111222244431122222222222222211 12445678899999999 899999999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHH
Q 002424 860 QASEELQVLEDHELAAEAFYLIAIV 884 (924)
Q Consensus 860 ~A~~~f~~l~~~~~~~~vl~~lA~l 884 (924)
+|+.. .-.+...-..++..|+++
T Consensus 234 ~al~~--~p~~~~~~~~a~~~L~~l 256 (259)
T d1xnfa_ 234 LAVAN--NVHNFVEHRYALLELSLL 256 (259)
T ss_dssp HHHTT--CCTTCHHHHHHHHHHHHH
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHh
Confidence 99853 122223334445555543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=1.2e-05 Score=85.51 Aligned_cols=208 Identities=8% Similarity=-0.154 Sum_probs=153.6
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcC-CHHHHHHHHHHHhhhhhccC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG-HLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G-~~~~A~~~l~~ll~l~~~~~ 699 (924)
.++...++.++|.++..++++++|+..++.|.++-|... ..|..+- ......| ++.+|...+..++.+.+
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~--~a~~~r~----~~l~~l~~~~~eal~~~~~al~~~p--- 109 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY--TVWHFRR----VLLKSLQKDLHEEMNYITAIIEEQP--- 109 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH--HHHHHHH----HHHHHTTCCHHHHHHHHHHHHHHCT---
T ss_pred CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCCh--HHHHHHH----HHHHHhCcCHHHHHHHHHHHHHHHH---
Confidence 457788999999999999999999999999999866322 2333221 2334555 59999999999988632
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
. -..++..+|.++...|++++|++.++.++..- .....++..+|.++...|+++.|+..+.+++.+--
T Consensus 110 ----~-~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d------p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p- 177 (315)
T d2h6fa1 110 ----K-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV- 177 (315)
T ss_dssp ----T-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-
T ss_pred ----h-hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh------hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-
Confidence 2 57889999999999999999999999998842 22367999999999999999999999999988731
Q ss_pred hCCcHHHHHHHHHHHHHHHHcCCC----hHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 002424 780 LNLDLLKASATLTLAELWLSFGPN----HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVL 855 (924)
Q Consensus 780 ~g~~~~~A~al~~La~l~~~lG~~----~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al 855 (924)
.-..+...+|.++..+|.. .+++|+..+..++..--. -..+++.++..+.. ....++.
T Consensus 178 -----~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~------~~~~~~~l~~ll~~-------~~~~~~~ 239 (315)
T d2h6fa1 178 -----RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH------NESAWNYLKGILQD-------RGLSKYP 239 (315)
T ss_dssp -----TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHTT-------TCGGGCH
T ss_pred -----ccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCC------chHHHHHHHHHHHh-------cChHHHH
Confidence 1134567788887777764 346788888877655322 13455556655433 3356677
Q ss_pred HHHHHHHHHHHh
Q 002424 856 DPLRQASEELQV 867 (924)
Q Consensus 856 ~~L~~A~~~f~~ 867 (924)
..++++.+.-..
T Consensus 240 ~~~~~~~~l~~~ 251 (315)
T d2h6fa1 240 NLLNQLLDLQPS 251 (315)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHhCCC
Confidence 777777665433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.39 E-value=3.5e-06 Score=85.56 Aligned_cols=217 Identities=12% Similarity=-0.040 Sum_probs=132.5
Q ss_pred cCHHHHHHHHHHHHHHhhccCch-HHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHH
Q 002424 639 KGYKEAFSALKIAEEKFLSVSKS-RILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTL 717 (924)
Q Consensus 639 G~y~eA~~~L~~a~~~f~~~~~~-~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll 717 (924)
++++.|+..+++++.... ..+. ....+ ..++ ..+...|++++|...+++++.+.+ . -+.+++++|.++
T Consensus 13 ~~~e~al~~~~e~l~~~~-~~~~~~a~~~-~~~G-~~y~~~g~~~~A~~~~~~al~l~p-------~-~~~a~~~lg~~~ 81 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRA-LTDDERAQLL-YERG-VLYDSLGLRALARNDFSQALAIRP-------D-MPEVFNYLGIYL 81 (259)
T ss_dssp HHHHHHHHHHHHHHTSSC-CCHHHHHHHH-HHHH-HHHHHTTCHHHHHHHHHHHHHHCC-------C-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh-cCCHHHHHHH-HHHH-HHHHHCCCHHHHHHHHHHhhccCC-------C-CHHHHhhhchHH
Confidence 456667777776655432 2222 22221 1222 688899999999999999999732 2 367899999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Q 002424 718 LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELW 797 (924)
Q Consensus 718 ~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~ 797 (924)
...|++++|++.+++++.... ....++..+|.++...|++..|+..+.+++.+.-. +. .+...++...
T Consensus 82 ~~~g~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~~~~~~ 149 (259)
T d1xnfa_ 82 TQAGNFDAAYEAFDSVLELDP------TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN--DP----FRSLWLYLAE 149 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHh------hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc--cH----HHHHHHHHHH
Confidence 999999999999999998532 22457889999999999999999999999877421 11 2223344444
Q ss_pred HHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH-hhcCHHHHHH
Q 002424 798 LSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ-VLEDHELAAE 876 (924)
Q Consensus 798 ~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~-~l~~~~~~~~ 876 (924)
..++.. +.+.. +........ ....... +...++.. -... ..++.+...+. .........+
T Consensus 150 ~~~~~~--~~~~~-~~~~~~~~~--~~~~~~~-----~~~~~~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~ 210 (259)
T d1xnfa_ 150 QKLDEK--QAKEV-LKQHFEKSD--KEQWGWN-----IVEFYLGN------ISEQ---TLMERLKADATDNTSLAEHLSE 210 (259)
T ss_dssp HHHCHH--HHHHH-HHHHHHHSC--CCSTHHH-----HHHHHTTS------SCHH---HHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhhH--HHHHH-HHHHhhccc--hhhhhhh-----HHHHHHHH------HHHH---HHHHHHHHHHHHhhhcCcccHH
Confidence 555553 33322 222222211 1111111 11222221 1111 12222222221 1222345567
Q ss_pred HHHHHHHHHHhcCCHHHHHHH
Q 002424 877 AFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 877 vl~~lA~l~~~lGd~~~r~~a 897 (924)
+++.+|.+|...|+.+++.++
T Consensus 211 ~~~~lg~~~~~~g~~~~A~~~ 231 (259)
T d1xnfa_ 211 TNFYLGKYYLSLGDLDSATAL 231 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHH
Confidence 889999999999999986654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.38 E-value=2.8e-06 Score=80.74 Aligned_cols=117 Identities=19% Similarity=0.049 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc------hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ------VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~------~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
+...+..|..++..|+|++|+..+++++.++...++. ...+.++.++|.+|...|+++.|+..+.+|+.+..+.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 3444556888899999999999999999999876653 2357789999999999999999999999999999876
Q ss_pred CCc-----HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH
Q 002424 781 NLD-----LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL 825 (924)
Q Consensus 781 g~~-----~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~ 825 (924)
... ...+.++.++|.++..+|+. ++|+..+++++.+..+.++.
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~--eeA~~~~~~Al~l~~~~~~~ 136 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRG--AEAMPEFKKVVEMIEERKGE 136 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHCCSC
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHhhHHhhch
Confidence 553 34566889999999999998 99999999999998766553
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.36 E-value=2.9e-06 Score=80.66 Aligned_cols=132 Identities=13% Similarity=0.019 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC------cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 747 ASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL------DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 747 a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~------~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
+..++..|..+...|+++.|+..+.+|+++....++ ....+.+..++|.++..+|.. ++|+..+++++....
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~--~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF--DEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCcc--chhhHhhhhhhhccc
Confidence 445566688999999999999999999999987654 445788899999999999998 999999999999887
Q ss_pred hhCC-----HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHH-HHHHHHHHHHHHHH
Q 002424 821 GHGG-----LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHE-LAAEAFYLIAIVFD 886 (924)
Q Consensus 821 ~~gd-----~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~-~~~~vl~~lA~l~~ 886 (924)
..+. ....+.+++.+|.++.. .|++++|+.++++|++++.+..... ....++..++..+.
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~~~~------lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~ 152 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALALDG------LGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIA 152 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHHhhhHHHHHH------HHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHH
Confidence 6654 34567789999999999 9999999999999999998776543 33333333443333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=3.6e-06 Score=83.08 Aligned_cols=127 Identities=11% Similarity=0.001 Sum_probs=102.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..+...|+|++|.+.+.++ . ++ .+.+++++|.++..+|+|++|++.+++++++- ...+.++.+
T Consensus 13 ~~~~~~~d~~~Al~~~~~i-------~--~~--~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld------p~~~~a~~~ 75 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV-------Q--DP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRD------KHLAVAYFQ 75 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS-------S--SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhc-------C--CC--CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh------hhhhhhHHH
Confidence 5678999999999888753 2 22 24678999999999999999999999999852 223778999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhC----------CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLN----------LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g----------~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
+|.+|.+.|+++.|+..+.+|+..-+.+. .....+.++..+|.++..+|.. ++|.+.++.++..
T Consensus 76 ~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~--~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 76 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW--KKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTT
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhc
Confidence 99999999999999999999987543221 1223467788999999999998 9999999888754
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=1.4e-05 Score=73.18 Aligned_cols=104 Identities=11% Similarity=-0.016 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc-H
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD-L 784 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~-~ 784 (924)
.+...-.+|..+...|+|++|++++++++.... ....++..+|.++...|+++.|+..+.+|+.+....... .
T Consensus 3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~ 76 (128)
T d1elra_ 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDP------TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (128)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHH
Confidence 456677899999999999999999999998522 236799999999999999999999999999998766554 5
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALP 817 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp 817 (924)
..+.++..+|.++..+|.. ++|+..++.++.
T Consensus 77 ~~a~~~~~lg~~~~~~~~~--~~A~~~~~kal~ 107 (128)
T d1elra_ 77 QIAKAYARIGNSYFKEEKY--KDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHh
Confidence 5688999999999999997 999999988864
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=2.4e-05 Score=76.90 Aligned_cols=137 Identities=15% Similarity=0.007 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+..+-+.|..+...|+|++|+..++++.+ ....+| .+++ ..++..|++++|...+.+++.+ ||
T Consensus 4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i~~-----~~~~~~---~nlG-~~~~~~g~~~~A~~~~~kAl~l-------dp 67 (192)
T d1hh8a_ 4 EAISLWNEGVLAADKKDWKGALDAFSAVQD-----PHSRIC---FNIG-CMYTILKNMTEAEKAFTRSINR-------DK 67 (192)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS-----CCHHHH---HHHH-HHHHHTTCHHHHHHHHHHHHHH-------CT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhcCC-----CCHHHH---HHHH-HHHHHcCCchhHHHHHHHHHHH-------hh
Confidence 345666889999999999999988874321 122222 2333 7889999999999999999987 33
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc--------c--chhHHHHHHHHHHHHHhcCChhhhHHHHHHH
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN--------L--QVENASVLLLLAEIHKKSGNAVLGIPYALAS 773 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~g--------d--~~~~a~al~~la~i~~~~G~~~~Al~~l~~A 773 (924)
. -+.++.++|.++..+|+|++|++.+++++...+... . ......++..+|.++...|++..|...+.+|
T Consensus 68 ~-~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A 146 (192)
T d1hh8a_ 68 H-LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146 (192)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred h-hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3 467899999999999999999999999987433211 1 1233678899999999999999999999888
Q ss_pred HHHH
Q 002424 774 LSFC 777 (924)
Q Consensus 774 L~la 777 (924)
+.+.
T Consensus 147 ~~~~ 150 (192)
T d1hh8a_ 147 TSMK 150 (192)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 7764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=2e-05 Score=83.79 Aligned_cols=183 Identities=8% Similarity=-0.061 Sum_probs=135.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcccchhHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAAN-QFSEAAAVAHSLFCMCYKFNLQVENASVLL 751 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G-~~~eAl~~l~~aL~~~~~~gd~~~~a~al~ 751 (924)
......+++.+|..++++++.+-+ . ...+++.+|.++...| ++++|++.++.++... .....++.
T Consensus 51 ~~~~~~e~~~~Al~~~~~ai~lnP-------~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~------p~~~~a~~ 116 (315)
T d2h6fa1 51 AVLQRDERSERAFKLTRDAIELNA-------A-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ------PKNYQVWH 116 (315)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHCT-------T-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC------TTCHHHHH
T ss_pred HHHHhCCchHHHHHHHHHHHHHCC-------C-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH------HhhhhHHH
Confidence 345578999999999999999733 2 4688999999999987 5999999999998852 23477999
Q ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHH
Q 002424 752 LLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARA 831 (924)
Q Consensus 752 ~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a 831 (924)
.+|.++...|++.+|+..+.+|+.+--. -..+...+|.++..+|.. ++|+..++.++..--. + ..+
T Consensus 117 ~~~~~~~~l~~~~eAl~~~~kal~~dp~------n~~a~~~~~~~~~~~~~~--~~Al~~~~~al~~~p~--n----~~a 182 (315)
T d2h6fa1 117 HRRVLVEWLRDPSQELEFIADILNQDAK------NYHAWQHRQWVIQEFKLW--DNELQYVDQLLKEDVR--N----NSV 182 (315)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCC--TTHHHHHHHHHHHCTT--C----HHH
T ss_pred HHhHHHHhhccHHHHHHHHhhhhhhhhc------chHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHCCc--c----HHH
Confidence 9999999999999999999999987422 246788899999999999 9999999999775221 2 235
Q ss_pred HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcC
Q 002424 832 FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLG 889 (924)
Q Consensus 832 ~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lG 889 (924)
+..+|.++.........+...+|+..+.+|+...-. -..++..++.++...|
T Consensus 183 ~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~------~~~~~~~l~~ll~~~~ 234 (315)
T d2h6fa1 183 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH------NESAWNYLKGILQDRG 234 (315)
T ss_dssp HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCC------chHHHHHHHHHHHhcC
Confidence 566666655422222234467888888888765321 2244555566665554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=4.7e-05 Score=69.49 Aligned_cols=96 Identities=9% Similarity=0.022 Sum_probs=83.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc-hhHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ-VENASVLL 751 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~-~~~a~al~ 751 (924)
..++..|+|++|..++++++.+. |. ...++.++|.++..+|+|++|++.+++++.+....... ...++++.
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~~-------p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKELD-------PT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-------TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-------cc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 67889999999999999999872 22 35789999999999999999999999999987765444 44578999
Q ss_pred HHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 752 LLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 752 ~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
.+|.++...|++..|+..+.+++..
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999988865
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=9.3e-05 Score=69.80 Aligned_cols=100 Identities=14% Similarity=-0.033 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
..+..+...|..+...|+|++|...++.+.+.-|... ..|. .++ ..++..|++.+|...+.+++.+-+
T Consensus 8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~--~~~~---~lg-~~~~~~~~~~~A~~~~~kal~~~p------ 75 (159)
T d1a17a_ 8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYG---NRS-LAYLRTECYGYALGDATRAIELDK------ 75 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHH---HHH-HHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhh--hhhh---hhH-HHHHhccccchHHHHHHHHHHHcc------
Confidence 5567788899999999999999999999998866321 1221 111 677899999999999999998722
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
. ...++.++|.++...|++++|++.+++++..
T Consensus 76 -~-~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 76 -K-YIKGYYRRAASNMALGKFRAALRDYETVVKV 107 (159)
T ss_dssp -T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -c-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 2 4578899999999999999999999999875
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.80 E-value=9.9e-06 Score=86.18 Aligned_cols=199 Identities=11% Similarity=-0.101 Sum_probs=107.9
Q ss_pred HHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHH
Q 002424 635 LAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHA 714 (924)
Q Consensus 635 ~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a 714 (924)
....|++++|+..++.+.+..|... ..|.-. ... ...+..+++.+|...+.+++.+ ||..........+
T Consensus 83 ~~~~~~~~~al~~~~~~l~~~pk~~--~~~~~~-~~~-~~~~~~~~~~~a~~~~~~al~~-------~~~~~~~~~~~~~ 151 (334)
T d1dcea1 83 EESAALVKAELGFLESCLRVNPKSY--GTWHHR-CWL-LSRLPEPNWARELELCARFLEA-------DERNFHCWDYRRF 151 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHH-HHH-HHTCSSCCHHHHHHHHHHHHHH-------CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcH--HHHHHh-hHH-HHHhccccHHHHHHHHHHHHhh-------CchhhhhhhhHHH
Confidence 3445556666666666655543211 122111 000 1223345566666666666664 3332333344555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh----------CCcH
Q 002424 715 RTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL----------NLDL 784 (924)
Q Consensus 715 ~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~----------g~~~ 784 (924)
.++...|++++|+..++.++.. ......++..+|.++...|+++.|...+.+++.+.... +...
T Consensus 152 ~~~~~~~~~~~Al~~~~~~i~~------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 225 (334)
T d1dcea1 152 VAAQAAVAPAEELAFTDSLITR------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND 225 (334)
T ss_dssp HHHHTCCCHHHHHHHHHTTTTT------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHhccccHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchh
Confidence 6666666666666666655442 12234556666666666666665544333333322211 0000
Q ss_pred HH--------------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 002424 785 LK--------------ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQN 850 (924)
Q Consensus 785 ~~--------------A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~ 850 (924)
.. ..+...++.++...|.. .+|...+.++++.-- ....++..+|.++.. .|+
T Consensus 226 ~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~------~~~ 291 (334)
T d1dcea1 226 QSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSE--LESCKELQELEPENK------WCLLTIILLMRALDP------LLY 291 (334)
T ss_dssp SHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHH--HHHHHHHHHHCTTCH------HHHHHHHHHHHHHCT------GGG
T ss_pred HHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhH--HHHHHHHHHHHhhCc------hHHHHHHHHHHHHHH------CCC
Confidence 00 00111344555555555 777777777665532 356789999999998 899
Q ss_pred hHHHHHHHHHHHHH
Q 002424 851 PEAVLDPLRQASEE 864 (924)
Q Consensus 851 ~~~Al~~L~~A~~~ 864 (924)
+++|+.++++|.+.
T Consensus 292 ~~eA~~~~~~ai~l 305 (334)
T d1dcea1 292 EKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999886
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.80 E-value=3e-05 Score=69.14 Aligned_cols=95 Identities=14% Similarity=0.013 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
...+..|..+...|++.+|+..+++++.... ....++..+|.++.+.|++..|+..+.+|+.+.- ...
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p------~~~ 84 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEP------EREEAWRSLGLTQAENEKDGLAIIALNHARMLDP------KDI 84 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhccccc------ccchhhhhhhhhhhhhhhHHHhhccccccccccc------ccc
Confidence 3457789999999999999999999988532 2378999999999999999999999999998852 235
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 002424 788 SATLTLAELWLSFGPNHAKMASNLIQQAL 816 (924)
Q Consensus 788 ~al~~La~l~~~lG~~~~~~Al~lLe~aL 816 (924)
.++..||.++..+|+. ++|++.+++.|
T Consensus 85 ~a~~~la~~y~~~g~~--~~A~~~l~~~l 111 (112)
T d1hxia_ 85 AVHAALAVSHTNEHNA--NAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred cchHHHHHHHHHCCCH--HHHHHHHHHHh
Confidence 7889999999999998 99999999876
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=5.3e-05 Score=67.93 Aligned_cols=91 Identities=8% Similarity=-0.087 Sum_probs=78.7
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|+|++|...+.+++.+. |. -+.++..+|.++...|++++|+..++.++... .....++..
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~-------p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~ 76 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD-------PH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------PDWGKGYSR 76 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-------TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-------Cc-chhhhhcccccccccccccccchhhhhHHHhc------cchhhHHHH
Confidence 67889999999999999999862 22 36789999999999999999999999998752 223568999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+|.++...|+++.|+..+.+++.+.
T Consensus 77 ~g~~~~~~~~~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 77 KAAALEFLNRFEEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998753
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.75 E-value=4e-05 Score=74.36 Aligned_cols=95 Identities=11% Similarity=-0.033 Sum_probs=81.7
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|+|++|...+.+++.+ ||. .+.++.++|.++...|+|++|+..++.++.+ ....+.++..
T Consensus 12 n~~~~~g~~~~Ai~~~~kal~~-------~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l------~p~~~~a~~~ 77 (201)
T d2c2la1 12 NRLFVGRKYPEAAACYGRAITR-------NPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL------DGQSVKAHFF 77 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-------CSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------CTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-------CCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh------CCCcHHHHHH
Confidence 6788999999999999999986 222 4688999999999999999999999999763 2334678999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
+|.++...|+++.|+..+.+|+.+.....
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~l~p~~~ 106 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999999886543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.75 E-value=3.5e-05 Score=74.79 Aligned_cols=102 Identities=16% Similarity=0.030 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 786 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 786 (924)
++.+...|..+...|+|++|+..+++++... .....++..+|.+|...|++..|+..+.+|+.+. ..-
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~------p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~------p~~ 71 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD------GQS 71 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC------TTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC------CCc
Confidence 5667789999999999999999999999852 2347789999999999999999999999998763 223
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh
Q 002424 787 ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH 822 (924)
Q Consensus 787 A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~ 822 (924)
+.++..+|.++..+|+. ++|+..+++++.+--..
T Consensus 72 ~~a~~~lg~~~~~l~~~--~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 72 VKAHFFLGQCQLEMESY--DEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp HHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCccc
Confidence 46788899999999998 99999999999876543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=0.00017 Score=67.89 Aligned_cols=99 Identities=10% Similarity=0.002 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.++.+...|..++..|+|++|+..+++++... .....++..+|.++...|++..|+..+.+|+.+-- .
T Consensus 9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p------~ 76 (159)
T d1a17a_ 9 RAEELKTQANDYFKAKDYENAIKFYSQAIELN------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK------K 76 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhhhccccc------hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc------c
Confidence 56777889999999999999999999999852 23477889999999999999999999999998842 2
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
...++..+|.++..+|+. ++|...+++++..
T Consensus 77 ~~~a~~~~g~~~~~~g~~--~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 77 YIKGYYRRAASNMALGKF--RAALRDYETVVKV 107 (159)
T ss_dssp CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCH--HHHHHHHHHHHHc
Confidence 346678899999999998 9999999999765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=9.2e-05 Score=66.31 Aligned_cols=97 Identities=8% Similarity=-0.049 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
.-+...|..++..|+|++|+..+++++.... ..+.++..+|.+|...|++..|+..+.+++.+--. -.
T Consensus 4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~ 71 (117)
T d1elwa_ 4 NELKEKGNKALSVGNIDDALQCYSEAIKLDP------HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------WG 71 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------cchhhhhcccccccccccccccchhhhhHHHhccc------hh
Confidence 3456789999999999999999999998532 23678999999999999999999999999987431 23
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 788 SATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 788 ~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
.++..+|.++..+|.. ++|+..++.++..
T Consensus 72 ~~~~~~g~~~~~~~~~--~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 72 KGYSRKAAALEFLNRF--EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTTCH--HHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHccCH--HHHHHHHHHHHHh
Confidence 5788999999999998 9999999999864
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.00041 Score=66.27 Aligned_cols=126 Identities=17% Similarity=0.070 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCch--H-------HHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhh
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKS--R-------ILLLKLQLLHERSLHRGHLKLAQKVCDELGVM 694 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~--~-------~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l 694 (924)
.+..+...|..+..+|+|++|+..++.+...++..... . ............++..|+|.+|...++.++.+
T Consensus 12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~ 91 (170)
T d1p5qa1 12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 91 (170)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence 35566788999999999999999999999988765431 1 11111111226777899999999999998886
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCCh
Q 002424 695 ASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNA 763 (924)
Q Consensus 695 ~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~ 763 (924)
||. ...+++++|.++..+|+|++|+..++.++.+. + ....+...++.++...++.
T Consensus 92 -------~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-----P-~n~~~~~~l~~~~~~~~~~ 146 (170)
T d1p5qa1 92 -------DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-----P-NNKAAKTQLAVCQQRIRRQ 146 (170)
T ss_dssp -------CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----S-SCHHHHHHHHHHHHHHHHH
T ss_pred -------ccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHHHHH
Confidence 332 36778899999999999999999999888742 1 1233444555555444433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.63 E-value=9.3e-05 Score=65.77 Aligned_cols=88 Identities=17% Similarity=0.012 Sum_probs=75.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++.+|...+++++.+. |. ...++..+|.++...|++.+|+..+++++... .....++..
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~~~-------p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~a~~~ 89 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQKE-------PE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD------PKDIAVHAA 89 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-------TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcccc-------cc-cchhhhhhhhhhhhhhhHHHhhcccccccccc------cccccchHH
Confidence 56788999999999999998863 22 46889999999999999999999999998852 234678999
Q ss_pred HHHHHHhcCChhhhHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL 774 (924)
+|.++...|++.+|+..+.+.|
T Consensus 90 la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 90 LAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHh
Confidence 9999999999999999998865
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.58 E-value=0.00028 Score=66.17 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
..+..++|.++..+|++++|++.+++++.+- .....++..+|.+|...|++..|+..+.+++.+.
T Consensus 67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~------p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 67 ISCNLNLATCYNKNKDYPKAIDHASKVLKID------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHhhHHHHHHHhcccchhhhhhhcccccc------chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4567789999999999999999999998852 2236799999999999999999999999999884
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00024 Score=67.98 Aligned_cols=105 Identities=13% Similarity=0.030 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc---------hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ---------VENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~---------~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
.+..+...|..+...|+|++|+..+++++......... .....+...+|.+|.+.|++.+|+..+.+|+.+
T Consensus 12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~ 91 (170)
T d1p5qa1 12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 91 (170)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence 45667788999999999999999999999875543221 223456778999999999999999999999988
Q ss_pred HHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 777 CQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 777 a~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
-- .-..++..+|.++..+|.. ++|+..+++++..
T Consensus 92 ~p------~~~~a~~~~g~~~~~~g~~--~~A~~~~~~al~l 125 (170)
T d1p5qa1 92 DS------NNEKGLSRRGEAHLAVNDF--ELARADFQKVLQL 125 (170)
T ss_dssp CT------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred cc------cchhhhHHHHHHHHHhhhH--HHHHHHHHHHHHh
Confidence 32 2356788999999999998 9999999998765
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.49 E-value=0.00027 Score=66.27 Aligned_cols=105 Identities=17% Similarity=0.044 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc----------hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ----------VENASVLLLLAEIHKKSGNAVLGIPYALASLS 775 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~----------~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~ 775 (924)
.+......|..+...|+|.+|+..+++++..+...... ...+.+..++|.+|.+.|++.+|+.++.+|+.
T Consensus 16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~ 95 (153)
T d2fbna1 16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 95 (153)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence 45566778899999999999999999999866533221 12245788899999999999999999999987
Q ss_pred HHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 776 FCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 776 la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
+-- .-..++.++|.++..+|+. ++|+..++.++.+
T Consensus 96 ~~p------~~~ka~~~~g~~~~~lg~~--~~A~~~~~~al~l 130 (153)
T d2fbna1 96 IDK------NNVKALYKLGVANMYFGFL--EEAKENLYKAASL 130 (153)
T ss_dssp HST------TCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHH
T ss_pred ccc------hhhhhhHHhHHHHHHcCCH--HHHHHHHHHHHHh
Confidence 732 1246889999999999998 9999999998866
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.44 E-value=0.00042 Score=65.91 Aligned_cols=105 Identities=10% Similarity=-0.017 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc---------chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL---------QVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd---------~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
.++.....|..+...|+|.+|+..+++++........ ....+.++.++|.+|...|++..|+..+.+++.+
T Consensus 14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l 93 (168)
T d1kt1a1 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 93 (168)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence 4567778999999999999999999999986643221 2223557888999999999999999999999987
Q ss_pred HHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 777 CQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 777 a~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
.- .-..+...+|.++..+|.. ++|+..+++++.+
T Consensus 94 ~p------~~~~a~~~~~~~~~~l~~~--~~A~~~~~~al~l 127 (168)
T d1kt1a1 94 DS------ANEKGLYRRGEAQLLMNEF--ESAKGDFEKVLEV 127 (168)
T ss_dssp CT------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHS
T ss_pred cc------chHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh
Confidence 42 2246788899999999998 9999999998654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.44 E-value=0.00049 Score=65.42 Aligned_cols=139 Identities=18% Similarity=0.122 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHHHHHHHHH---------HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 002424 747 ASVLLLLAEIHKKSGNAVLGIPYALASLSFC---------QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALP 817 (924)
Q Consensus 747 a~al~~la~i~~~~G~~~~Al~~l~~AL~la---------~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp 817 (924)
+..+...|..+.+.|++..|+..+.+|+.+. .........+.+..++|.++..+|.. .+|+..++.++.
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~--~~Ai~~~~~al~ 92 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY--TKAVECCDKALG 92 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhc--ccchhhhhhhhh
Confidence 6678889999999999999999999999764 22334455667788899999999998 999999999986
Q ss_pred HHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHH--HH
Q 002424 818 LILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAE--RE 895 (924)
Q Consensus 818 ~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~--r~ 895 (924)
+-- .-..+++.+|.|+.. .|++.+|+..+++|+.+.- .-.++...++.+...++...+ +.
T Consensus 93 l~p------~~~~a~~~~~~~~~~------l~~~~~A~~~~~~al~l~P------~n~~~~~~l~~~~~~~~~~~e~~kk 154 (168)
T d1kt1a1 93 LDS------ANEKGLYRRGEAQLL------MNEFESAKGDFEKVLEVNP------QNKAARLQIFMCQKKAKEHNERDRR 154 (168)
T ss_dssp HCT------TCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHSCT------TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc------chHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 521 235689999999999 9999999999999987531 123456666777666665443 33
Q ss_pred HHHHHHHHHH
Q 002424 896 EAAALFKEYV 905 (924)
Q Consensus 896 ~aa~~f~~l~ 905 (924)
.+...|+++.
T Consensus 155 ~~~~~f~~~~ 164 (168)
T d1kt1a1 155 TYANMFKKFA 164 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhh
Confidence 3666666653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.43 E-value=0.0006 Score=65.90 Aligned_cols=129 Identities=15% Similarity=-0.024 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
+...++++.|..+...|++++|...|.+|+.+++..-.. .+..+.|.... -.++..
T Consensus 9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~-------------~~~~~~w~~~~--r~~l~~--------- 64 (179)
T d2ff4a2 9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLD-------------DLRDFQFVEPF--ATALVE--------- 64 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG-------------GGTTSTTHHHH--HHHHHH---------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccc-------------cCcchHHHHHH--HHHHHH---------
Confidence 556788999999999999999999999999887642211 01112222111 112211
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH-HHhC
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC-QLLN 781 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la-~~~g 781 (924)
....+...++.++...|++++|+..+++++.. ++ ..-.++..++.++.+.|++..|+..+.++...- ++.|
T Consensus 65 --~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~-----~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG 136 (179)
T d2ff4a2 65 --DKVLAHTAKAEAEIACGRASAVIAELEALTFE-----HP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG 136 (179)
T ss_dssp --HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----ST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHS
T ss_pred --HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh-----CC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Confidence 14567788899999999999999999998873 33 234678888889999999999999988876654 3444
Q ss_pred Cc
Q 002424 782 LD 783 (924)
Q Consensus 782 ~~ 783 (924)
..
T Consensus 137 ~~ 138 (179)
T d2ff4a2 137 ID 138 (179)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=0.00012 Score=66.41 Aligned_cols=93 Identities=12% Similarity=0.051 Sum_probs=75.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcccchhHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAA---NQFSEAAAVAHSLFCMCYKFNLQVENASV 749 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~---G~~~eAl~~l~~aL~~~~~~gd~~~~a~a 749 (924)
...+..+++.+|++.|++++.+.+ . ..++.++.|.+++.. |++.+|+..+++++.. ......+.+
T Consensus 7 n~~~~~~~l~~Ae~~Y~~aL~~~p-------~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~----~~~~~~~~~ 74 (122)
T d1nzna_ 7 NELVSVEDLLKFEKKFQSEKAAGS-------V-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDY 74 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-------C-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCC-------C-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc----cCCchHHHH
Confidence 456678899999999999999632 1 468899999999864 4556799999888752 223455779
Q ss_pred HHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 750 LLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 750 l~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+..+|.+|.+.|++++|+.++.+++.+-
T Consensus 75 ~~~Lg~~y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 75 VFYLAVGNYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhC
Confidence 9999999999999999999999999873
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.33 E-value=0.00072 Score=64.15 Aligned_cols=102 Identities=14% Similarity=0.066 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc----------cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN----------LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~g----------d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~ 778 (924)
.....+..+...|+|.+|++.+++++....... .....+.++..+|.++.+.|+++.|+..+.+|+.+.
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~- 107 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 107 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-
Confidence 345678888999999999999999987544211 123346688999999999999999999999998774
Q ss_pred HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 779 LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 779 ~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
..-+.++.++|.++..+|.. ++|+..++.++.+
T Consensus 108 -----p~~~~a~~~~g~~~~~l~~~--~~A~~~~~~al~l 140 (169)
T d1ihga1 108 -----PSNTKALYRRAQGWQGLKEY--DQALADLKKAQEI 140 (169)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred -----hhhhhHHHhHHHHHHHccCH--HHHHHHHHHHHHh
Confidence 23467889999999999998 9999999999886
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=0.00071 Score=57.98 Aligned_cols=88 Identities=11% Similarity=0.047 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL-QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd-~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
++-.+.+|.++...|+|.+|+.++++++........ ....+.++..+|.++.+.|++++|+..+.+||.+-= .
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P------~ 78 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP------E 78 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc------C
Confidence 455789999999999999999999999987765332 345688999999999999999999999999998831 1
Q ss_pred HHHHHHHHHHHHHHc
Q 002424 786 KASATLTLAELWLSF 800 (924)
Q Consensus 786 ~A~al~~La~l~~~l 800 (924)
...|+.+|+.+...+
T Consensus 79 ~~~a~~Nl~~~~~~l 93 (95)
T d1tjca_ 79 HQRANGNLKYFEYIM 93 (95)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 235666666655433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.19 E-value=0.0023 Score=60.50 Aligned_cols=100 Identities=14% Similarity=0.039 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc----hH-------HHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhh
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK----SR-------ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMA 695 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~----~~-------~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~ 695 (924)
.+...|..+...|+|.+|+..++++....+.... .. ...+..+++ ..++..|+|.+|...+.+++.+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla-~~~~~~~~~~~Ai~~~~~al~~- 106 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG-ACKLKMSDWQGAVDSCLEALEI- 106 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHH-HHHHhhcccchhhhhhhhhhhh-
Confidence 3456677888999999999999988765432111 00 000111111 3445556666666666665554
Q ss_pred hccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002424 696 SSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 696 ~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~ 735 (924)
||. .+.+++++|.++..+|++++|+..++.+++
T Consensus 107 ------~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 107 ------DPS-NTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp ------CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------hhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 111 345555666666666666666666665555
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.18 E-value=0.0018 Score=67.99 Aligned_cols=242 Identities=9% Similarity=-0.047 Sum_probs=146.9
Q ss_pred HccC-HHHHHHHHHHHHHHhhccCchHHHHHH------HhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHH
Q 002424 637 VFKG-YKEAFSALKIAEEKFLSVSKSRILLLK------LQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEA 709 (924)
Q Consensus 637 ~~G~-y~eA~~~L~~a~~~f~~~~~~~~~~l~------l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a 709 (924)
..|+ +++|++.++.+++.-|.... .|... +..........|++.+|..+++.++...+ . ...+
T Consensus 40 ~~~~~~~~al~~~~~~l~~~P~~~~--a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-------k-~~~~ 109 (334)
T d1dcea1 40 QAGELDESVLELTSQILGANPDFAT--LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-------K-SYGT 109 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-------T-CHHH
T ss_pred hcccccHHHHHHHHHHHHHCCCcHH--HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-------C-cHHH
Confidence 3444 58999999999887664332 22211 11111345567789999999999988522 2 3466
Q ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 710 SLRHARTLLAAN--QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 710 ~~~~a~ll~~~G--~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
+..++.++...| ++++|+..++.++.. ++..........|.++...|.++.|+..+.+++.+-- .-.
T Consensus 110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~-----~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p------~~~ 178 (334)
T d1dcea1 110 WHHRCWLLSRLPEPNWARELELCARFLEA-----DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF------SNY 178 (334)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC------CCH
T ss_pred HHHhhHHHHHhccccHHHHHHHHHHHHhh-----CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC------CCH
Confidence 777777776666 589999999999884 3333333356778999999999999999988876631 224
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH---------HHHHHHHHHHHHhhhcCCCCC----CCCChHHH
Q 002424 788 SATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL---------ELRARAFIAEAKCLLSDPSFS----VSQNPEAV 854 (924)
Q Consensus 788 ~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~---------~~~A~a~~~LAr~~la~~~~~----~~g~~~~A 854 (924)
.+...+|.++..+|.. ++|...++.++......-.. ...+...+..+ ....++.. ..+..-..
T Consensus 179 ~a~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~--l~~~~~~~~~~~~l~~~~~~ 254 (334)
T d1dcea1 179 SSWHYRSCLLPQLHPQ--PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRW--LLGRAEPLFRCELSVEKSTV 254 (334)
T ss_dssp HHHHHHHHHHHHHSCC--CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHH--HHSCCCCSSSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCH--HHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHH--HHhCcchhhHHHHHHHHHHH
Confidence 5678899999999997 55544443333332221100 11111111111 11111110 01222233
Q ss_pred HHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002424 855 LDPLRQASEELQV-LEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKE 903 (924)
Q Consensus 855 l~~L~~A~~~f~~-l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~ 903 (924)
..-..+|...+.+ +..-..-..++..+|.++...|+.+++.++-....+
T Consensus 255 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 255 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444455555543 333456788999999999999999987775544433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.14 E-value=0.079 Score=52.59 Aligned_cols=231 Identities=12% Similarity=-0.008 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHH----cCCHHHHHHHHHHHhhhhhccCCC
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLH----RGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~----~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
.++.+||..+..+|+|++|+..++.|.+. ++... ...+. ..+.. ..++..|..+++.+... +
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----g~~~A-~~~Lg---~~y~~G~~~~~d~~~a~~~~~~a~~~----~-- 68 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSG-CFNLG---VLYYQGQGVEKNLKKAASFYAKACDL----N-- 68 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHH-HHHHH---HHHHHTSSSCCCHHHHHHHHHHHHHT----T--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCHHH-HHHHH---HHHHcCCCcchhHHHHHHhhcccccc----c--
Confidence 47889999999999999999999988643 44321 11121 33443 56999999999887662 1
Q ss_pred CcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 702 DMDLKTEASLRHARTLLA----ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~----~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+ ..+...++.++.. ..++..|+..++.+... |. ..+...++..+....................
T Consensus 69 ~----~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~----g~----~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~ 136 (265)
T d1ouva_ 69 Y----SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----KY----AEGCASLGGIYHDGKVVTRDFKKAVEYFTKA 136 (265)
T ss_dssp C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred c----cchhhccccccccccccchhhHHHHHHHhhhhhh----hh----hhHHHhhcccccCCCcccchhHHHHHHhhhh
Confidence 2 3455666666654 56888888888877542 22 3344455555554333333333333333333
Q ss_pred HHhCCcHHHHHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 002424 778 QLLNLDLLKASATLTLAELWLSFGPN--HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVL 855 (924)
Q Consensus 778 ~~~g~~~~~A~al~~La~l~~~lG~~--~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al 855 (924)
...++. .+...||.++..-... ....+...++.+ .+.|+ ..+++.||.++... .+...++.+|+
T Consensus 137 ~~~~~~----~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a----~~~g~----~~A~~~lg~~y~~g--~~~~~d~~~A~ 202 (265)
T d1ouva_ 137 CDLNDG----DGCTILGSLYDAGRGTPKDLKKALASYDKA----CDLKD----SPGCFNAGNMYHHG--EGATKNFKEAL 202 (265)
T ss_dssp HHTTCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHH----HHTTC----HHHHHHHHHHHHHT--CSSCCCHHHHH
T ss_pred hccccc----chhhhhhhhhccCCCcccccccchhhhhcc----ccccc----cccccchhhhcccC--cccccchhhhh
Confidence 333332 3445577777642222 124444444444 45555 45777788887763 12246788888
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh-cC---CHHHHHHHHHHHHHH
Q 002424 856 DPLRQASEELQVLEDHELAAEAFYLIAIVFDK-LG---RLAEREEAAALFKEY 904 (924)
Q Consensus 856 ~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~-lG---d~~~r~~aa~~f~~l 904 (924)
.++++|.+. +. ..+.+.+|.+|.. .| +.+.+.++-......
T Consensus 203 ~~~~~aa~~----g~----~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 203 ARYSKACEL----EN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp HHHHHHHHT----TC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred hhHhhhhcc----cC----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence 898888553 44 3466788888864 22 444444444433333
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.11 E-value=0.002 Score=67.10 Aligned_cols=198 Identities=9% Similarity=-0.039 Sum_probs=129.0
Q ss_pred HccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHH
Q 002424 637 VFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHART 716 (924)
Q Consensus 637 ~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~l 716 (924)
..+.+++|..++++|.+.++.. +..+|.... ......|+++.|..++.+++...+ .+ ...+....+.+
T Consensus 76 ~~~~~~~a~~i~~ral~~~~p~-~~~l~~~ya----~~~~~~~~~~~a~~i~~~~l~~~~----~~---~~~~w~~~~~~ 143 (308)
T d2onda1 76 AKLFSDEAANIYERAISTLLKK-NMLLYFAYA----DYEESRMKYEKVHSIYNRLLAIED----ID---PTLVYIQYMKF 143 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHH----HHHHHTTCHHHHHHHHHHHHTSSS----SC---THHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCC-CHHHHHHHH----HHHHhcccHHHHHHHHHHHHHHhc----CC---hHHHHHHHHHH
Confidence 3455678888888888665322 223443322 455689999999999999887421 12 44567788888
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 002424 717 LLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIH-KKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAE 795 (924)
Q Consensus 717 l~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~-~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~ 795 (924)
..+.|+++.|.+.+..++..+.. . ...+...|.+. ...|+++.|...+.+++...- .. .......+.
T Consensus 144 ~~~~~~~~~ar~i~~~al~~~~~----~--~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p---~~---~~~w~~y~~ 211 (308)
T d2onda1 144 ARRAEGIKSGRMIFKKAREDART----R--HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG---DI---PEYVLAYID 211 (308)
T ss_dssp HHHHHCHHHHHHHHHHHHTSTTC----C--THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT---TC---HHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCC----c--HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhh---hh---HHHHHHHHH
Confidence 89999999999999988764321 1 23344555553 456899999999999987632 22 244556777
Q ss_pred HHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhh
Q 002424 796 LWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL 868 (924)
Q Consensus 796 l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l 868 (924)
.....|+. ++|+.++++++...-. ++......+..+.+-... -|+.+.+....+++.+.|...
T Consensus 212 ~~~~~g~~--~~aR~~fe~ai~~~~~--~~~~~~~iw~~~~~fE~~------~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 212 YLSHLNED--NNTRVLFERVLTSGSL--PPEKSGEIWARFLAFESN------IGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHTTCCH--HHHHHHHHHHHHSSSS--CGGGCHHHHHHHHHHHHH------HSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHcCCh--HHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHCccc
Confidence 77888887 9999999998654321 111112233333333333 477788888888887777533
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.0003 Score=79.28 Aligned_cols=94 Identities=13% Similarity=0.026 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHH
Q 002424 747 ASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLE 826 (924)
Q Consensus 747 a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~ 826 (924)
..++..+|.++.+.|++..|...+.+++.+.. ..++..||.++...|+. ++|+..+++++...-..|
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~LG~l~~~~~~~--~~A~~~y~~A~~l~P~~~--- 186 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--------QHCLVHLGDIARYRNQT--SQAESYYRHAAQLVPSNG--- 186 (497)
T ss_dssp -----------------------CCHHHHHHH--------HHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCTTBS---
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHcccH--HHHHHHHHHHHHHCCCch---
Confidence 33444555555555555555555555544432 13444455555555554 555555555554432222
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 002424 827 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQAS 862 (924)
Q Consensus 827 ~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~ 862 (924)
.+++.||.++.. .|+..+|+.++.+|+
T Consensus 187 ---~~~~~Lg~~~~~------~~~~~~A~~~y~ral 213 (497)
T d1ya0a1 187 ---QPYNQLAILASS------KGDHLTTIFYYCRSI 213 (497)
T ss_dssp ---HHHHHHHHHHHH------TTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHH------cCCHHHHHHHHHHHH
Confidence 345555555555 455555555555554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.75 E-value=0.0031 Score=60.64 Aligned_cols=108 Identities=12% Similarity=-0.083 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-----ccc-----------hhHHHHHHHHHHHHHhcCChhhhHH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF-----NLQ-----------VENASVLLLLAEIHKKSGNAVLGIP 768 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~-----gd~-----------~~~a~al~~la~i~~~~G~~~~Al~ 768 (924)
..++.....|..+...|++++|.+.+.+++.+.+.. .+. .....++..+|.++...|++..|+.
T Consensus 9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~ 88 (179)
T d2ff4a2 9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 88 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 389999999999999999999999999999876521 111 1124578999999999999999999
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 769 YALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 769 ~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
.+.+++.+-- ..-.+...|+.++..+|+. .+|++.++++.....
T Consensus 89 ~~~~al~~~P------~~e~~~~~l~~al~~~Gr~--~eAl~~y~~~~~~L~ 132 (179)
T d2ff4a2 89 ELEALTFEHP------YREPLWTQLITAYYLSDRQ--SDALGAYRRVKTTLA 132 (179)
T ss_dssp HHHHHHHHST------TCHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC------ccHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHH
Confidence 9999988642 2236677799999999999 999999999876653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.75 E-value=0.00073 Score=75.97 Aligned_cols=205 Identities=12% Similarity=0.000 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCC
Q 002424 643 EAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQ 722 (924)
Q Consensus 643 eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~ 722 (924)
+|.+.+++|.++-|...+... +++ ..+..+|++.+| +++++.+ ||. -+++.. ++..+.+..
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~-----~la-~~~~~~~~l~ea---ye~~i~~-------dp~-~a~~~~--~e~~Lw~~~ 64 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKL-----GPA-EVWTSRQALQDL---YQKMLVT-------DLE-YALDKK--VEQDLWNHA 64 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSS-----CSS-SSHHHHHHHHHH---HHHHHHH-------CHH-HHHHHT--HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHh-----hHH-HHHHHHchHHHH---HHHHHHc-------Chh-hHHHHh--HHHHHHHHH
Confidence 688899999887666555321 111 345566677665 6777654 442 222222 222223333
Q ss_pred HHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCC
Q 002424 723 FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGP 802 (924)
Q Consensus 723 ~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~ 802 (924)
|..+++.++....... ........ ...++.+....|.+..|+..+.++..+ ....+.+...+|.++...|.
T Consensus 65 y~~~ie~~r~~~k~~~--~~~~~~~~-~~~~~~l~~a~~~Y~~ai~~l~~~~~l------~~~~~~~~~~lg~~~~~~~~ 135 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRA--NPNRSEVQ-ANLSLFLEAASGFYTQLLQELCTVFNV------DLPCRVKSSQLGIISNKQTH 135 (497)
T ss_dssp THHHHHHHHHHHSCSS--CTTTTHHH-HHHHHHHHHHHHHHHHHHHHHTC------------------------------
T ss_pred HHHHHHHHHHhccccc--CccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC------ChhhHHHHHHhHHHHHhCCC
Confidence 5556666665443110 11112222 223455666666777777666555443 34445667789999988998
Q ss_pred ChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 002424 803 NHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIA 882 (924)
Q Consensus 803 ~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA 882 (924)
. ++|...++.++... ..+++..||.++.. .|++.+|+.++++|.+..- .-..+++.+|
T Consensus 136 ~--~~A~~~~~~al~~~--------~~~~~~~LG~l~~~------~~~~~~A~~~y~~A~~l~P------~~~~~~~~Lg 193 (497)
T d1ya0a1 136 T--SAIVKPQSSSCSYI--------CQHCLVHLGDIARY------RNQTSQAESYYRHAAQLVP------SNGQPYNQLA 193 (497)
T ss_dssp ---------CCHHHHHH--------HHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHCT------TBSHHHHHHH
T ss_pred H--HHHHHHHHHHhCCC--------HHHHHHHHHHHHHH------cccHHHHHHHHHHHHHHCC------CchHHHHHHH
Confidence 8 89998888877543 24678899999999 8999999999999998863 4446788999
Q ss_pred HHHHhcCCHHHHHHH
Q 002424 883 IVFDKLGRLAEREEA 897 (924)
Q Consensus 883 ~l~~~lGd~~~r~~a 897 (924)
.++...|+..++-.+
T Consensus 194 ~~~~~~~~~~~A~~~ 208 (497)
T d1ya0a1 194 ILASSKGDHLTTIFY 208 (497)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHH
Confidence 999999999886653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.59 E-value=0.058 Score=55.36 Aligned_cols=192 Identities=8% Similarity=-0.030 Sum_probs=129.6
Q ss_pred cCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH
Q 002424 678 RGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIH 757 (924)
Q Consensus 678 ~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~ 757 (924)
.+..++|..++++++..+. +. ....+...+.+....|++++|...+++++.. .+.....+....+...
T Consensus 77 ~~~~~~a~~i~~ral~~~~---p~----~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~-----~~~~~~~~w~~~~~~~ 144 (308)
T d2onda1 77 KLFSDEAANIYERAISTLL---KK----NMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPTLVYIQYMKFA 144 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTT---TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcC---CC----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-----hcCChHHHHHHHHHHH
Confidence 3456778888888776322 11 2346777888999999999999999998862 2222344567777888
Q ss_pred HhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHH
Q 002424 758 KKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELW-LSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEA 836 (924)
Q Consensus 758 ~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~-~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LA 836 (924)
.+.|+.++|+..+.+|+..+.... ......|.+. ...|.. +.|+.+++.++...-.. ...+..++
T Consensus 145 ~~~~~~~~ar~i~~~al~~~~~~~------~~~~~~a~~e~~~~~~~--~~a~~i~e~~l~~~p~~------~~~w~~y~ 210 (308)
T d2onda1 145 RRAEGIKSGRMIFKKAREDARTRH------HVYVTAALMEYYCSKDK--SVAFKIFELGLKKYGDI------PEYVLAYI 210 (308)
T ss_dssp HHHHCHHHHHHHHHHHHTSTTCCT------HHHHHHHHHHHHTSCCH--HHHHHHHHHHHHHHTTC------HHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHhccCH--HHHHHHHHHHHHhhhhh------HHHHHHHH
Confidence 899999999999999876653221 2233344443 335776 89999999998753222 34556667
Q ss_pred HhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002424 837 KCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKE 903 (924)
Q Consensus 837 r~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~ 903 (924)
+.... .|+..+|...+++|+.... ..+.....+.......-...|+.+...+.-.++.+
T Consensus 211 ~~~~~------~g~~~~aR~~fe~ai~~~~--~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 211 DYLSH------LNEDNNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHT------TCCHHHHHHHHHHHHHSSS--SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHH------cCChHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777 8999999999999976431 12223344555556666777998887665444433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.54 E-value=0.0065 Score=51.63 Aligned_cols=83 Identities=16% Similarity=0.013 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHH-HHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI-LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~-~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
-++++|..+..+|+|++|...+++|.++++....... ..-.+...+..+...|++.+|...+++++.+ ||.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-------~P~- 78 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-------DPE- 78 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh-------CcC-
Confidence 3579999999999999999999999999876543211 1111121227888999999999999999997 332
Q ss_pred HHHHHHHHHHHH
Q 002424 706 KTEASLRHARTL 717 (924)
Q Consensus 706 ~a~a~~~~a~ll 717 (924)
...+..+++.+.
T Consensus 79 ~~~a~~Nl~~~~ 90 (95)
T d1tjca_ 79 HQRANGNLKYFE 90 (95)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 245666665554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.50 E-value=0.0045 Score=55.49 Aligned_cols=95 Identities=12% Similarity=-0.073 Sum_probs=73.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChh---hhHHHHHHHHHHHHHhCCcHHHHH
Q 002424 712 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAV---LGIPYALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 712 ~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~---~Al~~l~~AL~la~~~g~~~~~A~ 788 (924)
.++..+...+++++|.+.++.++.... ....++..+|.++.+++++. +|+..+.+++.. ......+.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p------~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~----~~~~~~~~ 73 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGS------VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRD 73 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC------CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc----cCCchHHH
Confidence 345567789999999999999998522 23667889999998876664 578777776642 22344567
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 789 ATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 789 al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
++..||.++..+|+. ++|+.+++++|..
T Consensus 74 ~~~~Lg~~y~~~g~~--~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 74 YVFYLAVGNYRLKEY--EKALKYVRGLLQT 101 (122)
T ss_dssp HHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh--HHHHHHHHHHHHh
Confidence 889999999999998 9999999999875
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.36 E-value=0.0023 Score=65.71 Aligned_cols=125 Identities=13% Similarity=-0.049 Sum_probs=85.0
Q ss_pred HHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHH
Q 002424 634 HLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRH 713 (924)
Q Consensus 634 ~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~ 713 (924)
-...+|++++|++.++++.+.-|.....+ +.+ +..+...|+|++|...++++..+.+ . ...+....
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar-~~L-----a~lL~~~G~~e~A~~~l~~a~~l~P-------~-~~~~~~~l 70 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASPKDASLR-SSF-----IELLCIDGDFERADEQLMQSIKLFP-------E-YLPGASQL 70 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHH-HHH-----HHHHHHHTCHHHHHHHHHHHHHHCG-------G-GHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHH-HHH-----HHHHHHCCCHHHHHHHHHHHHHhCC-------C-cHHHHHHH
Confidence 34568999999999999988766433222 112 2677899999999999999998733 2 33455566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 714 ARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 714 a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+.++...+...++......... .+ .......+...+.++...|++++|...+.++.++.
T Consensus 71 ~~ll~a~~~~~~a~~~~~~~~~----~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 71 RHLVKAAQARKDFAQGAATAKV----LG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HHHHHHHHHHHHHTTSCCCEEC----CC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhccccHHHHHHhhhhhc----cc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 6666655555544332221110 11 22345677788999999999999999999888765
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=96.03 E-value=0.37 Score=47.35 Aligned_cols=202 Identities=12% Similarity=0.008 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHH-HHHHHcCCHHHHHHHHHHHhhhhhccC
Q 002424 625 ALAHVKLIQHLAV----FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLH-ERSLHRGHLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 625 ~~a~~~La~~~a~----~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~-~~al~~G~~~~A~~~l~~ll~l~~~~~ 699 (924)
..+..+||..+.. ..++..|...++.+...- ... ....+...+ .-.....+...|...++++... +
T Consensus 34 ~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~----~~~-a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~----g 104 (265)
T d1ouva_ 34 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSN-GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----K 104 (265)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHH-HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----ccc-hhhccccccccccccchhhHHHHHHHhhhhhh----h
Confidence 3567888988876 557899988888766431 111 111111100 0011367888999988887652 2
Q ss_pred CCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLA----ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLS 775 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~----~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~ 775 (924)
...+...++..+.. ..+...|+..+..... .....+...+|.++...............-+.
T Consensus 105 ------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 170 (265)
T d1ouva_ 105 ------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--------LNDGDGCTILGSLYDAGRGTPKDLKKALASYD 170 (265)
T ss_dssp ------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred ------hhhHHHhhcccccCCCcccchhHHHHHHhhhhhc--------ccccchhhhhhhhhccCCCcccccccchhhhh
Confidence 23555566666554 5566777777665543 12245667788888875555566666666667
Q ss_pred HHHHhCCcHHHHHHHHHHHHHHHH-cCC-ChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHH
Q 002424 776 FCQLLNLDLLKASATLTLAELWLS-FGP-NHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEA 853 (924)
Q Consensus 776 la~~~g~~~~~A~al~~La~l~~~-lG~-~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~ 853 (924)
.+.+.|+ +.|...||.++.. .|. ..+++|+..++.+.. .|+ ..+++.||.++... .+...+..+
T Consensus 171 ~a~~~g~----~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~----~g~----~~a~~~LG~~y~~G--~g~~~n~~~ 236 (265)
T d1ouva_ 171 KACDLKD----SPGCFNAGNMYHHGEGATKNFKEALARYSKACE----LEN----GGGCFNLGAMQYNG--EGVTRNEKQ 236 (265)
T ss_dssp HHHHTTC----HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHTT--SSSSCCSTT
T ss_pred ccccccc----cccccchhhhcccCcccccchhhhhhhHhhhhc----ccC----HHHHHHHHHHHHcC--CCCccCHHH
Confidence 7666665 4677889988875 221 134899999998854 355 45778999999863 233457889
Q ss_pred HHHHHHHHHH
Q 002424 854 VLDPLRQASE 863 (924)
Q Consensus 854 Al~~L~~A~~ 863 (924)
|+.++++|.+
T Consensus 237 A~~~~~kAa~ 246 (265)
T d1ouva_ 237 AIENFKKGCK 246 (265)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999954
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.99 E-value=0.0031 Score=64.63 Aligned_cols=130 Identities=15% Similarity=0.025 Sum_probs=89.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++++|...+++++...+ . ...+...++.+++..|++++|++.++.+++... ....+...
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P----~----d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P------~~~~~~~~ 69 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASP----K----DASLRSSFIELLCIDGDFERADEQLMQSIKLFP------EYLPGASQ 69 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCT----T----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG------GGHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCC----C----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CcHHHHHH
Confidence 467889999999999999988532 2 468899999999999999999999999987532 22334455
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhC
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG 823 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~g 823 (924)
++.++...+....++....+.. ..+.+ ....++...+.++...|+. ++|..+++++....-..+
T Consensus 70 l~~ll~a~~~~~~a~~~~~~~~----~~~~p-~~~~~~l~~a~~~~~~gd~--~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 70 LRHLVKAAQARKDFAQGAATAK----VLGEN-EELTKSLVSFNLSMVSQDY--EQVSELALQIEELRQEKG 133 (264)
T ss_dssp HHHHHHHHHHHHHHTTSCCCEE----CCCSC-HHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHhccccHHHHHHhhhhh----cccCc-hHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHhcCCCCC
Confidence 5555544444433322211111 11222 3344556678888889998 999999999887654443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.94 E-value=0.0099 Score=54.69 Aligned_cols=88 Identities=8% Similarity=-0.024 Sum_probs=61.8
Q ss_pred HHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHcccchh
Q 002424 676 LHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQ----------FSEAAAVAHSLFCMCYKFNLQVE 745 (924)
Q Consensus 676 l~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~----------~~eAl~~l~~aL~~~~~~gd~~~ 745 (924)
-+.+.|.+|...++.++.+ ||. .+.++.++|.++...++ +++|+..+++++++ ...
T Consensus 8 ~r~~~fe~A~~~~e~al~~-------~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l------~P~ 73 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKS-------NPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------DPK 73 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------CTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CTT
T ss_pred HHHccHHHHHHHHHHHHhh-------CCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh------cch
Confidence 3567799999999999986 322 46888899999875544 46777777777764 223
Q ss_pred HHHHHHHHHHHHHhcCC-----------hhhhHHHHHHHHHHH
Q 002424 746 NASVLLLLAEIHKKSGN-----------AVLGIPYALASLSFC 777 (924)
Q Consensus 746 ~a~al~~la~i~~~~G~-----------~~~Al~~l~~AL~la 777 (924)
...++..+|.++...|+ +..|...+.+|+.+-
T Consensus 74 ~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 74 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 35678889999977664 355666666666553
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.88 E-value=0.16 Score=45.08 Aligned_cols=67 Identities=10% Similarity=0.088 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAAN---QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G---~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
...+.++.|+.+.... +..+|+.++++++. +++....+++..+|..|.+.|++++|+.++.++|.+-
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~-----~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-----EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-----HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-----cCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 4678888899888664 45678888887765 4556677899999999999999999999999988774
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.44 E-value=0.2 Score=45.36 Aligned_cols=93 Identities=12% Similarity=-0.064 Sum_probs=60.1
Q ss_pred HHHccCHHHHHHHHHHHHHHhhccCchHH-HHHHHh-hH-H-HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHH
Q 002424 635 LAVFKGYKEAFSALKIAEEKFLSVSKSRI-LLLKLQ-LL-H-ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 710 (924)
Q Consensus 635 ~a~~G~y~eA~~~L~~a~~~f~~~~~~~~-~~l~l~-l~-~-~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~ 710 (924)
+-+.|.|++|...++.+.++-|...+... +...+. .. + ...-..+.+.+|...+++++.+ ||. -..++
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-------~P~-~~~a~ 78 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-------DPK-KDEAV 78 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------CTT-CHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-------cch-hhHHH
Confidence 34567899999999999988764433221 111110 00 0 0111356788999999999987 222 46788
Q ss_pred HHHHHHHHHcCC-----------HHHHHHHHHHHHH
Q 002424 711 LRHARTLLAANQ-----------FSEAAAVAHSLFC 735 (924)
Q Consensus 711 ~~~a~ll~~~G~-----------~~eAl~~l~~aL~ 735 (924)
+++|.++..+|+ |.+|.+.++.++.
T Consensus 79 ~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 79 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 999999987764 5666666666665
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=87.61 E-value=1.7 Score=38.03 Aligned_cols=109 Identities=12% Similarity=-0.061 Sum_probs=74.4
Q ss_pred cCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHH
Q 002424 639 KGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL 718 (924)
Q Consensus 639 G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~ 718 (924)
.++++|...++.+.+. ++.. .... .......+..+|..+++++... + ...+.+.++.++.
T Consensus 7 kd~~~A~~~~~kaa~~----g~~~-a~~~-----l~~~~~~~~~~a~~~~~~aa~~----g------~~~a~~~Lg~~y~ 66 (133)
T d1klxa_ 7 KDLKKAIQYYVKACEL----NEMF-GCLS-----LVSNSQINKQKLFQYLSKACEL----N------SGNGCRFLGDFYE 66 (133)
T ss_dssp HHHHHHHHHHHHHHHT----TCTT-HHHH-----HHTCTTSCHHHHHHHHHHHHHT----T------CHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHC----CChh-hhhh-----hccccccCHHHHHHHHhhhhcc----c------chhhhhhHHHhhh
Confidence 3688899999887643 2211 1111 1123567899999999988662 2 3567788888876
Q ss_pred H----cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh----cCChhhhHHHHHHHHH
Q 002424 719 A----ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK----SGNAVLGIPYALASLS 775 (924)
Q Consensus 719 ~----~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~----~G~~~~Al~~l~~AL~ 775 (924)
. ..|+.+|+++++++... | ...+...+|.+|.. ..++.+|+.++.+|.+
T Consensus 67 ~g~~~~~d~~~A~~~~~~aa~~----g----~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~ 123 (133)
T d1klxa_ 67 NGKYVKKDLRKAAQYYSKACGL----N----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 123 (133)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred hccccchhhHHHHHHHhhhhcc----C----cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence 5 56799999999988652 2 35677888988876 3467788888766644
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.61 E-value=1.7 Score=38.13 Aligned_cols=52 Identities=13% Similarity=0.076 Sum_probs=43.8
Q ss_pred cCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 678 RGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 678 ~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
..+..++..+++.+... +|.....+++.+|..+..+|+|++|+++++.+|.+
T Consensus 51 ~~d~~~gI~lLe~~~~~-------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 51 VNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45667788888887653 55557899999999999999999999999999985
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=85.06 E-value=1.5 Score=38.32 Aligned_cols=109 Identities=13% Similarity=0.041 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh
Q 002424 680 HLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK 759 (924)
Q Consensus 680 ~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~ 759 (924)
|+.+|..+++++... + |+ .+.+.++. ....++++|+++++++.+ .+...+...+|.+|..
T Consensus 8 d~~~A~~~~~kaa~~----g--~~----~a~~~l~~--~~~~~~~~a~~~~~~aa~--------~g~~~a~~~Lg~~y~~ 67 (133)
T d1klxa_ 8 DLKKAIQYYVKACEL----N--EM----FGCLSLVS--NSQINKQKLFQYLSKACE--------LNSGNGCRFLGDFYEN 67 (133)
T ss_dssp HHHHHHHHHHHHHHT----T--CT----THHHHHHT--CTTSCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC----C--Ch----hhhhhhcc--ccccCHHHHHHHHhhhhc--------ccchhhhhhHHHhhhh
Confidence 678889999988663 3 33 23334443 356789999999988754 2345678888988865
Q ss_pred ----cCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH-cCC-ChHHHHHHHHHHHH
Q 002424 760 ----SGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS-FGP-NHAKMASNLIQQAL 816 (924)
Q Consensus 760 ----~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~-lG~-~~~~~Al~lLe~aL 816 (924)
..++.+|+.++.+|... |+ ..+...||.++.. .|. ...++|+.+++.+.
T Consensus 68 g~~~~~d~~~A~~~~~~aa~~----g~----~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa 122 (133)
T d1klxa_ 68 GKYVKKDLRKAAQYYSKACGL----ND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 122 (133)
T ss_dssp CSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHhhhhcc----Cc----chHHHHHHHHHHcCCccCCCHHHHHHHHHHHH
Confidence 34568889888877543 33 3567789998875 221 13588999888874
|