Citrus Sinensis ID: 002497

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-----
MPTIIFLFFTLFTTTTTSLPLQHHNRRRLLHQPFFPVPTTPPPLQQPSPSPSPSPSPSPSPFPQPQHKLLPKYPFSTTPPNNPQKPFFPSYPSPPPPPPAPPVLSTFPANISSLLFPHPPSKSAHRHVIILAISLSFLSAAVLIAAAAVFIYFRSKHRSSPDKTSTSDGQRLFPPNLPPSDGGHKTPTVQRNVSSSSNQPSTSSEFLYLGTLVNSRSGEMPVDTRNAAVKIGVSKSPSGYHKLGSPELNPLPPLLKQNSSFTSGEMCFNKEDDNEVKNITTEEDEDDEEEEFFSPRGSSGRKESREISTPARIGSSSRNFGSRSFNSRTASYPYSHSCSPTNSITSSCNSVSRNSSPNLMMKSRFQENAHNKNNSSVSSSSRSDSSGTQNSPDRAVPVKLPPPPPPLPPARFWEVPMAAPKSSGHPVLVAPSSLRPVGLKNLGLSLGNEELMKNENVEKSEETPRPKLKPLHWDKVRASSDRAMVWDQFKSGSFQLNEEMIETLFTVNNSNLNSKDNGRKQVLSVPNQENRVLDPKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFKDESPFKLGPAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINERTIYSSVRPMPTNPALPPAFPGFNGRQHYCSSDDESSSQS
cccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccEEEEcccccHHHHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
cccEEHHHHHHHccccccHHHHcccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEHHHcccccccccHHHHHHHHHcccccccccccccccccccccccEEEEcHHHHHHHHHHHHHccccHHHHHHHHHHccHHcccHHHHHHHHHHcccHHHHHHHHHHccccHHHccHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccEEEEEHHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHHccccccccccccHccHHHHHHccccEEcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHccccccccccccc
MPTIIFLFFTLFtttttslplqhhnrrrllhqpffpvpttppplqqpspspspspspspspfpqpqhkllpkypfsttppnnpqkpffpsypsppppppappvlstfpanissllfphppsksahRHVIILAISLSFLSAAVLIAAAAVFIYFRskhrsspdktstsdgqrlfppnlppsdgghktptvqrnvssssnqpstsseFLYLGTLvnsrsgempvdtrNAAVKIgvskspsgyhklgspelnplppllkqnssftsgemcfnkeddnevknitteededdeeeeffsprgssgrkesreistparigsssrnfgsrsfnsrtasypyshscsptnsitsscnsvsrnsspnlmmKSRFQenahnknnssvssssrsdssgtqnspdravpvklpppppplpparfwevpmaapkssghpvlvapsslrpvglknlglslgneelmknenvekseetprpklkplhwdkvrassdramvwdqfksgsfQLNEEMIETLFTVNnsnlnskdngrkqvlsvpnqenrvldpkksQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIkefkdespfklgpaEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTgnrmnvgtnrgdahaFKLDTLLKLVdvkgadgkttLLHFVVQEIIRAegsrlsganpdtktektqrssfqDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYfhgnsakeeahpFRIFLVVKEFLSTLDQVCKEVGrinertiyssvrpmptnpalppafpgfngrqhycssddesssqs
MPTIIFLFFTLFTTTTTSLPLQHHNRRRLLHQPFFPVPTTPPPLQQPSPSPSPSPSPSPSPFPQPQHKLLPKYPFSTTPPNNPQKPFFPSYPSPPPPPPAPPVLSTFPANISSLLFPHPPSKSAHRHVIILAISLSFLSAAVLIAAAAVFIYFRSKhrsspdktstsdgqrlfppnlppsdggHKTPTVQRnvssssnqpstssEFLYLGTLVNSRSGEMPVDTRNAAVKIGVSKSPSGYHKLGSPELNPLPPLLKQNSSFTSGEMcfnkeddnevknitteededdeeeeffsprgssgrkesreistparigsssrnfgsrsfNSRTASYPYSHSCSPTNSITSSCNSVSRNSSPNLMMKSRFQENAHnknnssvssssrsdssgtqnspdravpvklppPPPPLPPARFWEVPMAAPKSSGHPVLVAPSSLRPVGLKNLGLSLGNEELMKnenvekseetprpklkplhwDKVRASSDRAMVWDQFKSGSFQLNEEMIETLFTVNNSNLNSKDNGRKQVLsvpnqenrvldpkksqNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEerkikefkdespfklgpAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLktgnrmnvgtnrgdahaFKLDTLLKLVDVKGADGKTTLLHFVVQEIIraegsrlsganpdtktektqrssfqddveFRKLGLQVVSSLSGELTNVRKaaamdsdvlSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINERtiyssvrpmptnpALPPAFPGFNGRQHYCSSDDESSSQS
MPtiiflfftlftttttSLPLQHHNRRRLLHqpffpvpttppplqqpspspspspspspspfpqpqHKLLPKYPFSTTPPNNpqkpffpsypsppppppappvlstfpANISSLLFPHPPSKSAHRHviilaislsflsaavliaaaavfiYFRSKHRSSPDKTSTSDGQRLFPPNLPPSDGGHKTPtvqrnvssssnqpstssEFLYLGTLVNSRSGEMPVDTRNAAVKIGVSKSPSGYHKLGSPELNPLPPLLKQNSSFTSGEMCFNKEDDNEVKNITTeededdeeeeFFSPRGSSGRKESREISTPARIgsssrnfgsrsfnsRTASYPYSHSCSPTnsitsscnsvsrnsspnLMMKSRFQEnahnknnssvssssrsdssgtqnsPDRAVPVKlpppppplppARFWEVPMAAPKSSGHPVLVAPSSLRPVGLKNLGLSLGNEELMKNENVEKSEETPRPKLKPLHWDKVRASSDRAMVWDQFKSGSFQLNEEMIETLFTVNNSNLNSKDNGRKQVLSVPNQENRVLDPKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFKDESPFKLGPAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFkldtllklvdvkGADGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAeqeiisiqsqesVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINERTIYSSVRPMPTNPALPPAFPGFNGRQHYCssddesssqs
**TIIFLFFTLFTTTTTSLPLQHHNRRRLLHQPFF*****************************************************************************************HRHVIILAISLSFLSAAVLIAAAAVFIYFR***************************************************FLYLGTLV*****************************************************************************************************************************************************************************************************************************************************************************AMVWDQFKSGSFQLNEEMIETLFTV********************************NIAILLRALNVTVDEVCEGLLEGNSDTLGAELL***************************GPAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRA***************************FRKLGLQVVSSL***LTNV*********VLSSEVAKLAAGITKIMEVVKLNE**************************I*I****SVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINERTIYS***********************************
*PTIIFLFFTLFTTTTTSLPLQHHNRRRLLHQPFFPVP**********************************************************************************************ISLSFLSAAVLIAAAAVFIY*******************************************************************************************************************************************************************************************************************************************************************************************************************************HWDKVRASSDRAMVWDQFKSGSFQLNEEMIET*****************************LDPKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFKDESPFKLGPAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRAEGSRLSGANP*****************FRKLGLQVVSSLSGELTNVRKAAAMDSDVLS*********************************HSMNEFLKKAEQEIISIQSQ*SVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCK***********************************************
MPTIIFLFFTLFTTTTTSLPLQHHNRRRLLHQPFFPVPTT************************PQHKLLPKYPFSTTPPNNPQKPFFPSYPSPPPPPPAPPVLSTFPANISSLLFPHPPSKSAHRHVIILAISLSFLSAAVLIAAAAVFIYFRS**************QRLFPPNLPPSDG********************SSEFLYLGTLVNSRSGEMPVDTRNAAVKIGVSKSPSGYHKLGSPELNPLPPLLKQNSSFTSGEMCFNKEDDNEVKNIT***************************************FGSRSFNSRT*************************SSPNLMMKSRFQEN**************************AVPVKLPPPPPPLPPARFWEVPMAAPKSSGHPVLVAPSSLRPVGLKNLGLSLGNEELMKN***********PKLKPLHWDKVRASSDRAMVWDQFKSGSFQLNEEMIETLFTVNNSNLNSKDNGRKQVLSVPNQENRVLDPKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFKDESPFKLGPAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRAEGSRLS****************QDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINERTIYSSVRPMPTNPALPPAFPGFNGRQH************
*PTIIFLFFTLFTTTTTSLPLQHHNRRRLLHQPFFPVPTTPP**************************LLPKYPFSTT*****QKPFFPSYPSPPPP********T*********FPHPPSKSAHRHVIILAISLSFLSAAVLIAAAAVFIYFRSKH*********************************************SSEFLYLGTLVNS*********************************NPL*********************************************************************************************************************************************************************************************************************RPKLKPLHWDKVRASSDRAMVWDQFKSGSFQLNEEMIETLFTVNNS****************NQENRVLDPKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFKDESPFKLGPAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRAEGS*******************QDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINERT**************************************
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MPTIIFLFFTLFTTTTTSLPLQHHNRRRLLHQPFFPVPTTPPPLQQPSPSPSPSPSPSPSPFPQPQHKLLPKYPFSTTPPNNPQKPFFPSYPSPPPPPPAPPVLSTFPANISSLLFPHPPSKSAHRHVIILAISLSFLSAAVLIAAAAVFIYFRSKHRSSPDKTSTSDGQRLFPPNLPPSDGGHKTPTVQRNVSSSSNQPSTSSEFLYLGTLVNSRSGEMPVDTRNAAVKIGVSKSPSGYHKLGSPELNPLPPLLKQNSSFTSGEMCFNKEDDNEVKNITTEEDEDDEEEEFFSPRGSSGRKESREISTPARIGSSSRNFGSRSFNSRTASYPYSHSCSPTNSITSSCNSVSRNSSPNLMMKSRFQENAHNKNNSSVSSSSRSDSSGTQNSPDRAVPVKLPPPPPPLPPARFWEVPMAAPKSSGHPVLVAPSSLRPVGLKNLGLSLGNEELMKNENVEKSEETPRPKLKPLHWDKVRASSDRAMVWDQFKSGSFQLNEEMIETLFTVNNSNLNSKDNGRKQVLSVPNQENRVLDPKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFKDESPFKLGPAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINERTIYSSVRPMPTNPALPPAFPGFNGRQHYCSSDDESSSQS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query915 2.2.26 [Sep-21-2011]
Q8S0F0960 Formin-like protein 1 OS= yes no 0.496 0.472 0.712 0.0
O22824894 Formin-like protein 2 OS= yes no 0.778 0.796 0.509 0.0
Q9SE971051 Formin-like protein 1 OS= no no 0.473 0.411 0.716 0.0
Q69MT2788 Formin-like protein 15 OS yes no 0.467 0.543 0.607 1e-150
Q10Q99892 Formin-like protein 8 OS= no no 0.433 0.445 0.635 1e-144
Q9FJX6899 Formin-like protein 6 OS= no no 0.431 0.439 0.618 1e-139
Q8H8K7849 Formin-like protein 4 OS= no no 0.473 0.510 0.568 1e-137
Q0D519774 Formin-like protein 13 OS no no 0.448 0.529 0.502 1e-115
Q9MA60884 Formin-like protein 11 OS no no 0.434 0.450 0.481 1e-104
Q94B77900 Formin-like protein 5 OS= no no 0.439 0.446 0.486 1e-104
>sp|Q8S0F0|FH1_ORYSJ Formin-like protein 1 OS=Oryza sativa subsp. japonica GN=FH1 PE=2 SV=1 Back     alignment and function desciption
 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/463 (71%), Positives = 385/463 (83%), Gaps = 9/463 (1%)

Query: 459 KSEET-PRPKLKPLHWDKVRASSDRAMVWDQFKSGSFQLNEEMIETLFTVN--NSNLNSK 515
           KSEET PRPKLKPLHWDKVRASSDR MVWDQ KS SFQ+NEEMIETLF  N  NS    +
Sbjct: 497 KSEETTPRPKLKPLHWDKVRASSDRVMVWDQLKSSSFQVNEEMIETLFICNPANSAPPKE 556

Query: 516 DNGRKQVLSVPNQENRVLDPKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESL 575
              R+ VL  P  +N+VLDPKKSQNIAILLRALNV+ ++VC+ L EGN++  GAELLE+L
Sbjct: 557 PATRRPVLPTPKTDNKVLDPKKSQNIAILLRALNVSKEQVCDALCEGNTENFGAELLETL 616

Query: 576 LKMAPTKEEERKIKEFKDE-SPFKLGPAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEY 634
           LKMAPTKEEE K++EFK+E SP KLGPAEKFL+AVL+IPFAFKRVDAMLYIANF+SEV Y
Sbjct: 617 LKMAPTKEEEIKLREFKEETSPIKLGPAEKFLKAVLDIPFAFKRVDAMLYIANFESEVNY 676

Query: 635 LKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKG 694
           LK+SFETL+ AC ELR SR+FLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKG
Sbjct: 677 LKKSFETLETACDELRNSRLFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKG 736

Query: 695 ADGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGE 754
            DGKTTLLHFVVQEIIR EGS LS +N    T +TQ +  +D++E +KLGLQVV+ L  E
Sbjct: 737 TDGKTTLLHFVVQEIIRTEGSHLSASN--QSTPRTQANPLRDELECKKLGLQVVAGLGNE 794

Query: 755 LTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAE 814
           L+NV+KAAAMDSDVLSS V+KLA GI KI EV++LNEE+  +E + +F  SM +FLK+A+
Sbjct: 795 LSNVKKAAAMDSDVLSSYVSKLAGGIEKITEVLRLNEEVKSREDAWRFHDSMQKFLKRAD 854

Query: 815 QEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRIN 874
            +II +Q+QESVALS+VKEITEYFHG+SAKEEAHPFRIF+VV++FLS LDQVCKEVGRIN
Sbjct: 855 DDIIRVQAQESVALSLVKEITEYFHGDSAKEEAHPFRIFMVVRDFLSVLDQVCKEVGRIN 914

Query: 875 ERTIYSSVR--PMPTNPALPPAFPGFNGRQHYCSSDDESSSQS 915
           +RTI SSVR  P+P NP +P  FP  +  +    SDDESS+ S
Sbjct: 915 DRTIASSVRHFPVPVNPMMPQLFPRIHALRAGI-SDDESSATS 956

Oryza sativa subsp. japonica (taxid: 39947)
>sp|O22824|FH2_ARATH Formin-like protein 2 OS=Arabidopsis thaliana GN=FH2 PE=3 SV=1 Back     alignment and function description
>sp|Q9SE97|FH1_ARATH Formin-like protein 1 OS=Arabidopsis thaliana GN=FH1 PE=1 SV=1 Back     alignment and function description
>sp|Q69MT2|FH15_ORYSJ Formin-like protein 15 OS=Oryza sativa subsp. japonica GN=FH15 PE=2 SV=1 Back     alignment and function description
>sp|Q10Q99|FH8_ORYSJ Formin-like protein 8 OS=Oryza sativa subsp. japonica GN=FH8 PE=2 SV=1 Back     alignment and function description
>sp|Q9FJX6|FH6_ARATH Formin-like protein 6 OS=Arabidopsis thaliana GN=FH6 PE=1 SV=1 Back     alignment and function description
>sp|Q8H8K7|FH4_ORYSJ Formin-like protein 4 OS=Oryza sativa subsp. japonica GN=FH4 PE=3 SV=1 Back     alignment and function description
>sp|Q0D519|FH13_ORYSJ Formin-like protein 13 OS=Oryza sativa subsp. japonica GN=FH13 PE=2 SV=1 Back     alignment and function description
>sp|Q9MA60|FH11_ARATH Formin-like protein 11 OS=Arabidopsis thaliana GN=FH11 PE=2 SV=1 Back     alignment and function description
>sp|Q94B77|FH5_ARATH Formin-like protein 5 OS=Arabidopsis thaliana GN=FH5 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query915
224095457948 predicted protein [Populus trichocarpa] 0.927 0.895 0.605 0.0
225434156932 PREDICTED: formin-like protein 1-like [V 0.536 0.526 0.790 0.0
449445381960 PREDICTED: formin-like protein 2-like [C 0.916 0.873 0.535 0.0
356519655862 PREDICTED: formin-like protein 1-like [G 0.869 0.923 0.541 0.0
356502758880 PREDICTED: formin-like protein 1-like [G 0.887 0.922 0.512 0.0
6691125835 FH protein NFH2 [Nicotiana tabacum] 0.818 0.897 0.514 0.0
255587815411 conserved hypothetical protein [Ricinus 0.433 0.965 0.834 0.0
255583387 1140 conserved hypothetical protein [Ricinus 0.537 0.431 0.682 0.0
224129328532 predicted protein [Populus trichocarpa] 0.543 0.934 0.675 0.0
297824371891 hypothetical protein ARALYDRAFT_483497 [ 0.867 0.891 0.471 0.0
>gi|224095457|ref|XP_002310397.1| predicted protein [Populus trichocarpa] gi|222853300|gb|EEE90847.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/934 (60%), Positives = 663/934 (70%), Gaps = 85/934 (9%)

Query: 25  NRRRLLHQPFFPVPTTPPPLQQPSPSPSPSPSPSPSPFPQPQHKLLPKYPFSTTP-PNNP 83
           ++R LLHQPFFP  T  PP Q PS SP            Q Q    PKYPF++TP  NN 
Sbjct: 29  HQRHLLHQPFFPSTTAIPPTQPPSLSP------------QTQ----PKYPFTSTPNKNNN 72

Query: 84  QKPFFPSYPSPPPPPPAPPVLSTFPANISSLLFPHPPSKSAHRHVIILAISLSFLSAAVL 143
            +  F      PPPPP    L+TFPANISSLL PH  S   H  +I ++ISLS L AA+L
Sbjct: 73  LQKPFFPALPSPPPPPPTSTLATFPANISSLLLPHRSSSPHHNLIISISISLSLLFAALL 132

Query: 144 IAAAAVFIYFRSKHR-SSPDKTSTSDGQRLFPPNLPPSDGGHKTPTVQRNVSSSSNQPST 202
              +A FIY R + +  SP K S S+  RL+P N  PSDG  K P +           ST
Sbjct: 133 ALLSAFFIYSRRRTQPFSPQKGSRSESLRLYPQNTIPSDGSPKIPKLPHR----PGVVST 188

Query: 203 SSEFLYLGTLVNSRSG----EMPVDTRNAAVKIGVSKSPSG-YHKLGSPELNPLPPLLKQ 257
           SSEFLYLGTLVNS++G    + P  T NA +K GVS S S  Y KLGSPEL PLPPL + 
Sbjct: 189 SSEFLYLGTLVNSQAGIDDQDKPTSTSNAVLKTGVSSSSSSHYQKLGSPELRPLPPLPRH 248

Query: 258 NSS--FTSGEMCFNKEDDNEVKNITTEEDEDDEEEEFFSPRGSSGRKESREISTPARIGS 315
           N +  + SGE+  +   ++EV       D D EEEEFFSPRGSSGRKE+   S   R+ S
Sbjct: 249 NYTPTYRSGEVLVSSSKEDEV-------DSDTEEEEFFSPRGSSGRKEANHESL-VRVDS 300

Query: 316 SSRN---------FGSRSFNSRTASYPYSHSCSPT----------------NSITSSCNS 350
           SSR          FGSRSFNSRTASYP S+S  P+                +  + S ++
Sbjct: 301 SSRRVIQGIQGEIFGSRSFNSRTASYPLSNSFCPSKSVSSSVSPVSNSSHRSGKSQSTDT 360

Query: 351 VSRNSSPNLMMKSRFQENAHNK--NNSSVSSSSRSDSSGTQNSPDRAVPVKL-------- 400
           +    +P   +K      + +    NS  + +S+  +SG     ++ VPV +        
Sbjct: 361 IISFPAPVQSIKQSSPSISPSSSGRNSGETLNSQERNSGFSGQNEQ-VPVSVGKQFVPPK 419

Query: 401 -PPPPPPLPPARFWEVPMAAPKSS-------GHPVLVAPSSLRPVGLKNLGL-SLGNEEL 451
            PPPPPP PP+RFWE+P+    +        G PVLV P+  +PV +++  +  + NE++
Sbjct: 420 LPPPPPPPPPSRFWEMPVGFRMAQEVNLGIPGPPVLVMPA--KPVLVQDHAMPVMANEQM 477

Query: 452 MKNENVEKSEETPRPKLKPLHWDKVRASSDRAMVWDQFKSGSFQLNEEMIETLFTVNNSN 511
             N +VE++EE+ +PKLKPLHWDKVRASSDRAMVWDQ KS SFQLNEEMIETLF VNN N
Sbjct: 478 QSNGSVERNEESMKPKLKPLHWDKVRASSDRAMVWDQIKSSSFQLNEEMIETLFVVNNPN 537

Query: 512 LNSKD-NGRKQVLSVPNQENRVLDPKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAE 570
            N KD NGR+Q L + NQENRVLDPKKSQNIAILLRALNVT++EVC+ LLEGN DTLG E
Sbjct: 538 FNVKDHNGRRQSLPLLNQENRVLDPKKSQNIAILLRALNVTIEEVCDALLEGNLDTLGTE 597

Query: 571 LLESLLKMAPTKEEERKIKEFKDESPFKLGPAEKFLRAVLEIPFAFKRVDAMLYIANFDS 630
           LLESLL+MAPTKEEE K+K+FKDESPFKLGPAEKFL+ VL++PFAFKRVDAMLYI NFDS
Sbjct: 598 LLESLLRMAPTKEEEYKLKDFKDESPFKLGPAEKFLKEVLDVPFAFKRVDAMLYITNFDS 657

Query: 631 EVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLV 690
           EVEYLKRSFETL+ AC ELR SRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLV
Sbjct: 658 EVEYLKRSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLV 717

Query: 691 DVKGADGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSS 750
           D+KG DGKTTLLHFVVQEIIR EGSRLSG N +  TEKTQ+S+FQD+VEFRKLGLQVVS 
Sbjct: 718 DIKGTDGKTTLLHFVVQEIIRLEGSRLSGTNQNQTTEKTQQSAFQDEVEFRKLGLQVVSG 777

Query: 751 LSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFL 810
           L GELTNV+KAAAMDSDVLSSEVAKLA GITKI EV+KLNEEIA+KESS +FS SMN F+
Sbjct: 778 LGGELTNVKKAAAMDSDVLSSEVAKLATGITKITEVLKLNEEIALKESSWRFSESMNGFM 837

Query: 811 KKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEV 870
           KKAE+EI+ +Q+QE  ALS+VKEITEYFHGNSAKEEA PFRIF+VV++FLS LD VCKEV
Sbjct: 838 KKAEEEIVMLQAQEKAALSLVKEITEYFHGNSAKEEARPFRIFMVVRDFLSILDHVCKEV 897

Query: 871 GRINERTIYSSVRPMPTNPALPPAFPGFNGRQHY 904
           G+INERTI SS RPMP+NP LPP FPG  GR HY
Sbjct: 898 GKINERTICSSARPMPSNPTLPPVFPGLIGRHHY 931

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225434156|ref|XP_002275001.1| PREDICTED: formin-like protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449445381|ref|XP_004140451.1| PREDICTED: formin-like protein 2-like [Cucumis sativus] gi|449498402|ref|XP_004160528.1| PREDICTED: formin-like protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356519655|ref|XP_003528486.1| PREDICTED: formin-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356502758|ref|XP_003520183.1| PREDICTED: formin-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|6691125|gb|AAF24497.1|AF213696_1 FH protein NFH2 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|255587815|ref|XP_002534405.1| conserved hypothetical protein [Ricinus communis] gi|223525352|gb|EEF27974.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|255583387|ref|XP_002532454.1| conserved hypothetical protein [Ricinus communis] gi|223527844|gb|EEF29940.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224129328|ref|XP_002320557.1| predicted protein [Populus trichocarpa] gi|222861330|gb|EEE98872.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297824371|ref|XP_002880068.1| hypothetical protein ARALYDRAFT_483497 [Arabidopsis lyrata subsp. lyrata] gi|297325907|gb|EFH56327.1| hypothetical protein ARALYDRAFT_483497 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query915
TAIR|locus:20944931051 AFH1 "formin homology 1" [Arab 0.520 0.452 0.631 6.3e-168
TAIR|locus:2043989894 AT2G43800 [Arabidopsis thalian 0.467 0.478 0.616 1.5e-153
TAIR|locus:2158576899 FH6 "formin homolog 6" [Arabid 0.441 0.449 0.570 3.6e-124
TAIR|locus:2172129900 Fh5 "formin homology5" [Arabid 0.521 0.53 0.410 6.2e-91
TAIR|locus:2079807884 AT3G05470 [Arabidopsis thalian 0.485 0.502 0.421 7.1e-90
TAIR|locus:2025981929 AT1G59910 [Arabidopsis thalian 0.459 0.452 0.370 1e-68
TAIR|locus:2020568760 FH8 "formin 8" [Arabidopsis th 0.515 0.621 0.349 1.3e-66
TAIR|locus:2156248782 AT5G48360 [Arabidopsis thalian 0.324 0.379 0.442 7.7e-66
TAIR|locus:2079711841 AT3G07540 [Arabidopsis thalian 0.350 0.381 0.373 1.2e-58
UNIPROTKB|F1PZE51283 DIAPH1 "Uncharacterized protei 0.265 0.189 0.305 6.7e-23
TAIR|locus:2094493 AFH1 "formin homology 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1489 (529.2 bits), Expect = 6.3e-168, Sum P(2) = 6.3e-168
 Identities = 313/496 (63%), Positives = 365/496 (73%)

Query:   414 EVPMAAPKSSGHPVLVAPSSLRPVGLKNLGLSLGNEELMKNENV---EKSEETPRPKLKP 470
             +V   A   S  P L  PS   P  + +  L + +  +   E V   E +EETP+PKLK 
Sbjct:   543 QVTTKADTISRPPSLTPPS--HPFVIPSENLPVTSSPMETPETVCASEAAEETPKPKLKA 600

Query:   471 LHWDKVRASSDRAMVWDQFKSGSFQLNEEMIETLFTVN--NSNLNSKDNGRKQVLSVPNQ 528
             LHWDKVRASSDR MVWD  +S SF+L+EEMIETLF     N+  N      + VL  PNQ
Sbjct:   601 LHWDKVRASSDREMVWDHLRSSSFKLDEEMIETLFVAKSLNNKPNQSQTTPRCVLPSPNQ 660

Query:   529 ENRVLDPKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKI 588
             ENRVLDPKK+QNIAILLRALNVT++EVCE LLEGN+DTLG ELLESLLKMAPTKEEERK+
Sbjct:   661 ENRVLDPKKAQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKL 720

Query:   589 KEFKDESPFKLGPAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGE 648
             K + D+SP KLG AEKFL+A+L+IPFAFKRVDAMLY+ANF+SEVEYLK+SFETL+ AC E
Sbjct:   721 KAYNDDSPVKLGHAEKFLKAMLDIPFAFKRVDAMLYVANFESEVEYLKKSFETLEAACEE 780

Query:   649 LRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFXXXXXXXXXXXXGADGKTTLLHFVVQE 708
             LR SRMFLKLLEAVLKTGNRMNVGTNRGDAHAF            GADGKTTLLHFVVQE
Sbjct:   781 LRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQE 840

Query:   709 IIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSDV 768
             IIRAEG+RLSG N  T           DD++ RKLGLQVVSSL  EL+NV+KAAAMDS+V
Sbjct:   841 IIRAEGTRLSGNNTQT-----------DDIKCRKLGLQVVSSLCSELSNVKKAAAMDSEV 889

Query:   769 LSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAXXXXXXXXXXXXVAL 828
             LSS V+KL+ GI KI E +++   I  + +S++FS SM  FLK+A            VAL
Sbjct:   890 LSSYVSKLSQGIAKINEAIQVQSTITEESNSQRFSESMKTFLKRAEEEIIRVQAQESVAL 949

Query:   829 SMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINERTIYSSVR--PMP 886
             S+VKEITEYFHGNSAKEEAHPFRIFLVV++FL  +D+VCKEVG INERT+ SS    P+P
Sbjct:   950 SLVKEITEYFHGNSAKEEAHPFRIFLVVRDFLGVVDRVCKEVGMINERTMVSSAHKFPVP 1009

Query:   887 TNPALPPAFPGFNGRQ 902
              NP +P   PG  GR+
Sbjct:  1010 VNPMMPQPLPGLVGRR 1025
GO:0003779 "actin binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005515 "protein binding" evidence=IPI
GO:0016020 "membrane" evidence=IDA
GO:0030036 "actin cytoskeleton organization" evidence=IDA;TAS
GO:0005886 "plasma membrane" evidence=IDA
GO:0051015 "actin filament binding" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0045010 "actin nucleation" evidence=IDA
GO:0051016 "barbed-end actin filament capping" evidence=IDA
TAIR|locus:2043989 AT2G43800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158576 FH6 "formin homolog 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172129 Fh5 "formin homology5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079807 AT3G05470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025981 AT1G59910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020568 FH8 "formin 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156248 AT5G48360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079711 AT3G07540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1PZE5 DIAPH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O22824FH2_ARATHNo assigned EC number0.50900.77810.7964yesno
Q8S0F0FH1_ORYSJNo assigned EC number0.71270.49610.4729yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query915
pfam02181372 pfam02181, FH2, Formin Homology 2 Domain 1e-134
smart00498392 smart00498, FH2, Formin Homology 2 Domain 1e-132
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 2e-07
smart00818165 smart00818, Amelogenin, Amelogenins, cell adhesion 3e-07
pfam04652315 pfam04652, DUF605, Vta1 like 2e-06
smart00818165 smart00818, Amelogenin, Amelogenins, cell adhesion 1e-05
PRK14950585 PRK14950, PRK14950, DNA polymerase III subunits ga 2e-05
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 2e-05
pfam04652315 pfam04652, DUF605, Vta1 like 5e-05
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 6e-05
pfam07174297 pfam07174, FAP, Fibronectin-attachment protein (FA 6e-05
PHA03264416 PHA03264, PHA03264, envelope glycoprotein D; Provi 7e-05
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 8e-05
PRK14948620 PRK14948, PRK14948, DNA polymerase III subunits ga 9e-05
pfam07174297 pfam07174, FAP, Fibronectin-attachment protein (FA 1e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 2e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 2e-04
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 2e-04
PHA03294835 PHA03294, PHA03294, envelope glycoprotein H; Provi 3e-04
pfam07223357 pfam07223, DUF1421, Protein of unknown function (D 4e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 5e-04
pfam07174297 pfam07174, FAP, Fibronectin-attachment protein (FA 5e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 5e-04
pfam02948174 pfam02948, Amelogenin, Amelogenin 6e-04
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 7e-04
PRK14948620 PRK14948, PRK14948, DNA polymerase III subunits ga 0.001
PTZ00449943 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti 0.001
PRK11633226 PRK11633, PRK11633, cell division protein DedD; Pr 0.001
PRK11633226 PRK11633, PRK11633, cell division protein DedD; Pr 0.001
pfam04652315 pfam04652, DUF605, Vta1 like 0.002
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 0.002
pfam11029136 pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP 0.002
pfam14179110 pfam14179, YppG, YppG-like protein 0.002
PRK10819246 PRK10819, PRK10819, transport protein TonB; Provis 0.002
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.003
PHA03369663 PHA03369, PHA03369, capsid maturational protease; 0.003
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 0.003
TIGR00601378 TIGR00601, rad23, UV excision repair protein Rad23 0.003
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 0.004
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 0.004
smart00818165 smart00818, Amelogenin, Amelogenins, cell adhesion 0.004
pfam04652315 pfam04652, DUF605, Vta1 like 0.004
>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain Back     alignment and domain information 
 Score =  406 bits (1046), Expect = e-134
 Identities = 163/409 (39%), Positives = 233/409 (56%), Gaps = 39/409 (9%)

Query: 458 EKSEETPRPKLKPLHWDKVRASSDRAMVWDQFKSGSFQLNEEM--IETLFTVNNSNLNSK 515
           +K E  P+ KLKPLHWDKV  + DR  VWD+    SF+ + ++  +E LF+       SK
Sbjct: 1   KKKEPKPKKKLKPLHWDKVNPAQDRGTVWDELDEESFEKDLDLSELEELFSAKAKKKKSK 60

Query: 516 DNGRKQVLSVPNQENRVLDPKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESL 575
            + +K       +E  VLDPK+SQNIAILLR L +  +E+ + +LE +   LG ELLE+L
Sbjct: 61  KSEKKSSSKKKKKEISVLDPKRSQNIAILLRKLKLPPEEIVQAILEMDESVLGLELLENL 120

Query: 576 LKMAPTKEEERKIKEFKDESPFKLGPAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYL 635
           LKMAPTKEE +K+KE+K + P KLG AE+FL  + +IP   +R++A+L+ + F+ EVE L
Sbjct: 121 LKMAPTKEELKKLKEYKGD-PSKLGRAEQFLLELSKIPRLEERLEALLFKSTFEEEVEEL 179

Query: 636 KRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGA 695
           K S ETL+ A  ELR+SR F KLLE +L  GN MN GT RG+A  FKL +LLKL D K  
Sbjct: 180 KPSLETLEAASEELRESRKFKKLLELILALGNYMNSGTRRGNAKGFKLSSLLKLSDTKST 239

Query: 696 DGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGEL 755
           D KTTLLH++V+ I                                   L  +   S EL
Sbjct: 240 DNKTTLLHYLVKIIRE--------------------------------KLPDLLDFSSEL 267

Query: 756 TNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQ 815
           ++V KAA +D + L  +V +L  G+ K+   ++L+          KF   M EFL++AE+
Sbjct: 268 SHVEKAAKVDLEQLEKDVKELEKGLKKLERELELSALDE--HPDDKFVEKMKEFLEEAEE 325

Query: 816 EIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLD 864
           ++  ++S    A+ + KE+TEYF      +E  P   F ++++FL    
Sbjct: 326 KLDKLESLLKEAMELFKELTEYF--GEDPKETSPEEFFKILRDFLRMFK 372

Length = 372
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) Back     alignment and domain information
>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|223035 PHA03294, PHA03294, envelope glycoprotein H; Provisional Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|217298 pfam02948, Amelogenin, Amelogenin Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional Back     alignment and domain information
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional Back     alignment and domain information
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220950 pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP2) Back     alignment and domain information
>gnl|CDD|222579 pfam14179, YppG, YppG-like protein Back     alignment and domain information
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23 Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 915
smart00498432 FH2 Formin Homology 2 Domain. FH proteins control 100.0
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 100.0
PF02181370 FH2: Formin Homology 2 Domain; InterPro: IPR015425 100.0
KOG1922833 consensus Rho GTPase effector BNI1 and related for 100.0
KOG1923830 consensus Rac1 GTPase effector FRL [Signal transdu 100.0
KOG1925 817 consensus Rac1 GTPase effector FHOS [Signal transd 100.0
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 98.98
smart00498432 FH2 Formin Homology 2 Domain. FH proteins control 98.02
KOG1922833 consensus Rho GTPase effector BNI1 and related for 96.35
PHA032473151 large tegument protein UL36; Provisional 96.16
KOG3671569 consensus Actin regulatory protein (Wiskott-Aldric 95.39
PHA032473151 large tegument protein UL36; Provisional 95.29
KOG3671569 consensus Actin regulatory protein (Wiskott-Aldric 94.95
PF08374221 Protocadherin: Protocadherin; InterPro: IPR013585 93.8
PF0869340 SKG6: Transmembrane alpha-helix domain; InterPro: 93.71
TIGR01478295 STEVOR variant surface antigen, stevor family. Thi 91.52
PTZ00370296 STEVOR; Provisional 91.3
KOG1923830 consensus Rac1 GTPase effector FRL [Signal transdu 89.24
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 89.23
PF15102146 TMEM154: TMEM154 protein family 88.26
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 86.42
KOG1962216 consensus B-cell receptor-associated protein and r 85.65
PF01299306 Lamp: Lysosome-associated membrane glycoprotein (L 84.93
PF01102122 Glycophorin_A: Glycophorin A; InterPro: IPR001195 84.68
KOG1830518 consensus Wiskott Aldrich syndrome proteins [Cytos 82.02
KOG4849498 consensus mRNA cleavage factor I subunit/CPSF subu 81.68
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 81.65
PF08336134 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-term 80.44
>smart00498 FH2 Formin Homology 2 Domain Back     alignment and domain information 
Probab=100.00  E-value=1.9e-70  Score=626.59  Aligned_cols=374  Identities=39%  Similarity=0.617  Sum_probs=336.0

Q ss_pred             CCCCCCCccccccccccccCCCCceeccccccccccCHHHHHHHhhhcCCCCCCCcc-C-Cccc-ccCCCCcccccChhh
Q 002497          461 EETPRPKLKPLHWDKVRASSDRAMVWDQFKSGSFQLNEEMIETLFTVNNSNLNSKDN-G-RKQV-LSVPNQENRVLDPKK  537 (915)
Q Consensus       461 ~~~Pk~KLK~LhWdKL~~~~~~~TIW~~l~~~~~~Ld~~eLE~lF~~k~~~~~~K~~-~-kk~v-~~k~~keisvLD~KR  537 (915)
                      ...|+.|||+|||+||+..++++|||+++++.. ++|+++||++|+++......+.. . ++.. .+++.++++|||+||
T Consensus         3 ~~~P~~klK~l~W~ki~~~~~~~tvW~~i~~~~-~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~ild~kr   81 (432)
T smart00498        3 EPKPKKKLKPLHWDKLNPLDPRGTVWDKIDENS-EGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKILDPKR   81 (432)
T ss_pred             CCCCCCCCcCcCceeCCCccccCChhhhcCccc-ccCHHHHHHHhCcCccccCccccccccccccccccccceEeechhH
Confidence            468999999999999999999999999999875 79999999999987654332221 1 1111 223456799999999


Q ss_pred             hhHHHHHHhhcCCCHHHHHHHHhcCCCCCCCHHHHHHHHhhCCChHHHHHHHhhcccCCCCCChHHHHHHHHhCcccHHH
Q 002497          538 SQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFKDESPFKLGPAEKFLRAVLEIPFAFK  617 (915)
Q Consensus       538 aqNI~I~L~klk~s~eeI~~AIl~~D~~~L~~e~Le~Llk~lPt~EE~~~Lke~~~d~ps~L~~aEqFl~~l~~IP~~~~  617 (915)
                      +|||+|+|++|+++.++|++||++||...|+.|.|+.|++++||.||+.+|++|.+++++.|+++||||+.|++||+|..
T Consensus        82 s~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l~~ip~~~~  161 (432)
T smart00498       82 SQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLISNIPYLEE  161 (432)
T ss_pred             HhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHHHHhCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999998867899999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhccccccCCCCCceeeeeccccccccccccCCC
Q 002497          618 RVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADG  697 (915)
Q Consensus       618 RL~allf~~~F~~~~~~l~~~l~~l~~AceeLr~S~~L~~lL~lVL~iGN~LN~gt~rG~A~GFkLsSL~KL~dvKs~D~  697 (915)
                      ||+||+|+.+|++.+++|+..|.+|.+||++|++|+.|++||++||++|||||+|+.||+|+||+|++|.||.|||++|+
T Consensus       162 Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~Ks~d~  241 (432)
T smart00498      162 RLNALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVKSADN  241 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhcCCCCCCCCCCcccccccCCcchhHHHHHhcchhhhchhhhhhhHHHhhcCCHHHHHHHHHHHH
Q 002497          698 KTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLA  777 (915)
Q Consensus       698 k~TLLhyVVq~Iir~e~~~l~~~~~~~~~~~~~~~~f~ed~e~~klglq~V~~ls~EL~~V~kAAkvdle~L~sdv~kL~  777 (915)
                      ++|||||||+.|.++++.                                +..|.+||..|..|++++ ++|.+++.+|+
T Consensus       242 k~tLLhylv~~i~~~~p~--------------------------------~~~f~~el~~v~~askvs-~~l~~~~~~l~  288 (432)
T smart00498      242 KTTLLHFLVKIIRKKYPD--------------------------------LLDFYSDLHHLDKAKVNL-EQLEKDVKQLE  288 (432)
T ss_pred             CccHHHHHHHHHHHhChh--------------------------------hccchhhhccHHHHHHHH-HHHHHHHHHHH
Confidence            999999999988775432                                345778999999999999 99999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHH
Q 002497          778 AGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVK  857 (915)
Q Consensus       778 ~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~  857 (915)
                      ++++.++..+.....  ....+|+|..+|..|+..|+.+++.|+..++++...|++++.|||||+++  ..+.+||.+|.
T Consensus       289 ~~~~~~e~~~~~l~~--~~~~~d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~--~~~~efF~~f~  364 (432)
T smart00498      289 RQIKNLETDLGGLSD--PENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKD--TSPEEFFKDFN  364 (432)
T ss_pred             HHHHHHHHHHHhcCC--CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHH
Confidence            999999865432211  12235899999999999999999999999999999999999999999885  45689999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 002497          858 EFLSTLDQVCKEVGR  872 (915)
Q Consensus       858 dFl~~~dka~kE~~r  872 (915)
                      +|+..|.+|++|+.+
T Consensus       365 ~F~~~f~ka~~en~~  379 (432)
T smart00498      365 EFLKEFSKAAEENIK  379 (432)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998754

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis [] Back     alignment and domain information
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>smart00498 FH2 Formin Homology 2 Domain Back     alignment and domain information
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PHA03247 large tegument protein UL36; Provisional Back     alignment and domain information
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PHA03247 large tegument protein UL36; Provisional Back     alignment and domain information
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains Back     alignment and domain information
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ] Back     alignment and domain information
>TIGR01478 STEVOR variant surface antigen, stevor family Back     alignment and domain information
>PTZ00370 STEVOR; Provisional Back     alignment and domain information
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF15102 TMEM154: TMEM154 protein family Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms] Back     alignment and domain information
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear Back     alignment and domain information
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane Back     alignment and domain information
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton] Back     alignment and domain information
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query915
3o4x_E467 Crystal Structure Of Complex Between Amino And Carb 1e-17
1v9d_A340 Crystal Structure Of The Core Fh2 Domain Of Mouse M 2e-17
3obv_E457 Autoinhibited Formin Mdia1 Structure Length = 457 2e-17
4eah_A402 Crystal Structure Of The Formin Homology 2 Domain O 6e-13
2z6e_A419 Crystal Structure Of Human Daam1 Fh2 Length = 419 8e-13
2j1d_G483 Crystallization Of Hdaam1 C-Terminal Fragment Lengt 1e-12
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy Terminal Fragments Of Mdia1 Length = 467 Back     alignment and structure 
Iteration: 1

 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 1/174 (0%)
Query: 534 DPKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFKD 593
           D K +QN++I L +  +   E+   +LE N   L   ++++L+K  P  E+ + + E K+
Sbjct: 103 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 162
Query: 594 ESPFKLGPAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSR 653
           E    L  +E+F   +  +P    R++A+L+   F  +VE +K    ++  AC ELRKS 
Sbjct: 163 EYD-DLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSE 221
Query: 654 MFLKLLEAVLKTGNRMNVGTNRGDAHAFXXXXXXXXXXXXGADGKTTLLHFVVQ 707
            F  LLE  L  GN MN G+    A  F             AD K TLLHF+ +
Sbjct: 222 NFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAE 275
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1 Length = 340 Back     alignment and structure
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure Length = 457 Back     alignment and structure
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3 Bound To Actin Length = 402 Back     alignment and structure
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2 Length = 419 Back     alignment and structure
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment Length = 483 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query915
3obv_E457 Protein diaphanous homolog 1; autoinhibition, acti 1e-108
2j1d_G483 DAAM1, disheveled-associated activator of morphoge 1e-103
1v9d_A340 Diaphanous protein homolog 1; helix bundle, protei 1e-100
1ux5_A411 BNI1 protein; structural protein, FH2 actin cytosk 1e-85
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-07
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-06
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 9e-06
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-04
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 8e-07
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 1e-05
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 5e-04
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 5e-04
2yew_A253 Capsid protein, coat protein; alphavirus, molecula 3e-04
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 4e-04
3dzy_A467 Retinoic acid receptor RXR-alpha; DNA-binding, HOS 6e-04
1dx0_A219 Prion protein; brain, repeat; NMR {Bos taurus} SCO 8e-04
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Length = 457 Back     alignment and structure
 Score =  340 bits (873), Expect = e-108
 Identities = 108/426 (25%), Positives = 180/426 (42%), Gaps = 45/426 (10%)

Query: 459 KSEETPRPKLKPLHWDKVRASS-DRAMVWDQFKSGSFQLNEEM--IETLFTVNNSNLNSK 515
           K    P  +L+  +W K  A    +   W + K   F+ NE    +   F+       +K
Sbjct: 1   KKVYKPEVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAK 60

Query: 516 DNG-----RKQVLSVPNQENRVLDPKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAE 570
            +      +K V     +E +VLD K +QN++I L +  +   E+   +LE N   L   
Sbjct: 61  KDQEGGEEKKSVQKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTES 120

Query: 571 LLESLLKMAPTKEEERKIKEFKDESPFKLGPAEKFLRAVLEIPFAFKRVDAMLYIANFDS 630
           ++++L+K  P  E+ + + E K+E    L  +E+F   +  +P    R++A+L+   F  
Sbjct: 121 MIQNLIKQMPEPEQLKMLSELKEE-YDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSE 179

Query: 631 EVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLV 690
           +VE +K    ++  AC ELRKS  F  LLE  L  GN MN G+    A  F +  L KL 
Sbjct: 180 QVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLR 239

Query: 691 DVKGADGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSS 750
           D K AD K TLLHF+ +              P+                        V  
Sbjct: 240 DTKSADQKMTLLHFLAELCENDH--------PE------------------------VLK 267

Query: 751 LSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFL 810
              EL +V KA+ + ++ L   + ++   I  +     +    A  +   KF   M  F+
Sbjct: 268 FPDELAHVEKASRVSAENLQKSLDQMKKQIADVER--DVQNFPAATDEKDKFVEKMTSFV 325

Query: 811 KKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEV 870
           K A+++   ++   S   ++ KE+ +YF  +  K     F  F+ +  F +   Q  KE 
Sbjct: 326 KDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEF--FMDLHNFRNMFLQAVKEN 383

Query: 871 GRINER 876
            +  E 
Sbjct: 384 QKRRET 389
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483 Back     alignment and structure
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Length = 340 Back     alignment and structure
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Length = 411 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 Back     alignment and structure
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 915
d1v9da_332 a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 2e-84
d1ux5a_411 a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces 1e-81
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 332 Back     information, alignment and structure

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  272 bits (696), Expect = 2e-84
 Identities = 93/349 (26%), Positives = 153/349 (43%), Gaps = 37/349 (10%)

Query: 528 QENRVLDPKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERK 587
           +E +VLD K +QN++I L +  +   E+   +LE N   L   ++++L+K  P  E+ + 
Sbjct: 2   KELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKM 61

Query: 588 IKEFKDESPFKLGPAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACG 647
           + E K+E    L  +E+F   +  +P    R++A+L+   F  +VE +K    ++  AC 
Sbjct: 62  LSELKEE-YDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACE 120

Query: 648 ELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQ 707
           ELRKS  F  LLE  L  GN MN G+    A  F +  L KL D K AD K TLLHF+ +
Sbjct: 121 ELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAE 180

Query: 708 EIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSD 767
                                                   V     EL +V KA+ + ++
Sbjct: 181 LCENDHPE--------------------------------VLKFPDELAHVEKASRVSAE 208

Query: 768 VLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVA 827
            L   + ++   I  +   V+     A  +   KF   M  F+K A+++   ++   S  
Sbjct: 209 NLQKSLDQMKKQIADVERDVQNFP--AATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNM 266

Query: 828 LSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINER 876
            ++ KE+ +YF  +  K     F  F+ +  F +   Q  KE  +  E 
Sbjct: 267 ETLYKELGDYFVFDPKKLSVEEF--FMDLHNFRNMFLQAVKENQKRRET 313
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 411 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query915
d1ux5a_411 Bni1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 100.0
d1v9da_332 Diaphanous protein homolog 1, dia1 {Mouse (Mus mus 100.0
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=533.26  Aligned_cols=372  Identities=18%  Similarity=0.277  Sum_probs=322.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC------CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             999888654211003336777740012466644------56999999986002788788766776445679986421381
Q 002497          462 ETPRPKLKPLHWDKVRASSDRAMVWDQFKSGSF------QLNEEMIETLFTVNNSNLNSKDNGRKQVLSVPNQENRVLDP  535 (915)
Q Consensus       462 ~~Pk~KLK~LhWdKI~~~~~k~TIW~~i~~~~~------~ld~e~lE~lF~~k~~~~~~K~~~kkqv~~~~~kevsILD~  535 (915)
                      ..|+.|||+|||++|+..  ++|||+.+.+..+      .+|+++||++|+++......   .++   .+..+.++|||+
T Consensus         3 PkP~~klK~l~W~ki~~~--~~tiW~~i~~~~~~~~~~~~~~~~~le~~F~~k~~~~~~---~~~---~~~~~~~~lLd~   74 (411)
T d1ux5a_           3 PRPHKKLKQLHWEKLDCT--DNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLA---SKR---KEDLQKITFLSR   74 (411)
T ss_dssp             CCCSSCBCCCCCCCCSSC--CSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHHH---HHH---HHTTTSBCCSCH
T ss_pred             CCCCCCCCCCCCEECCCC--CCCCCHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC---CCC---CCCCCCCCCCCH
T ss_conf             989999989776159998--988200204410036788663099999986447777776---666---666662001767


Q ss_pred             HHHHHHHHHHHHC-CCCHHHHHHHHHCCCCCCCCHHHHHHHH--------------HHCCCHHHHHHHHHHCC-----CC
Q ss_conf             4466799988625-9998999999823899998979999999--------------60999599999984103-----69
Q 002497          536 KKSQNIAILLRAL-NVTVDEVCEGLLEGNSDTLGAELLESLL--------------KMAPTKEEERKIKEFKD-----ES  595 (915)
Q Consensus       536 KRaqNIaI~L~kl-kls~eeI~~AIl~~D~~~L~~e~Le~Ll--------------k~~Pt~EE~~~Lke~~~-----d~  595 (915)
                      ||+|||+|+|++| +++.++|++||++||.++|+.+.+..++              +++|+.+|+..+++|.+     .+
T Consensus        75 kr~qni~I~L~~~~~~s~~~i~~ai~~~d~~~l~~~~l~~ll~~~~~~~~~~~~l~~~lPt~eE~~~l~~~~~~~~~~~d  154 (411)
T d1ux5a_          75 DISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKD  154 (411)
T ss_dssp             HHHHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSSC
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             89999989998706999999999998368542487899999830210134799999817993789999999851445478


Q ss_pred             CCCCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             999993889999983--822589799999999975999999999899999999999831669999999997144234579
Q 002497          596 PFKLGPAEKFLRAVL--EIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGT  673 (915)
Q Consensus       596 pskL~~aEqFL~~L~--~IP~~~~RL~allf~~~Fe~~v~~L~~~l~tl~~AceeLr~S~~L~~lLelILaiGN~LN~Gt  673 (915)
                      .+.|+.+|||+++|+  .||++..||+||+|+.+|++.+++|...+..+..||++|++|+.|++||++||++|||||+|+
T Consensus       155 ~~~L~~~Eqf~~~l~~~~i~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~  234 (411)
T d1ux5a_         155 PNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTS  234 (411)
T ss_dssp             STTBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCGG
T ss_pred             HHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             45438799999999862334499999999999999999999999999999999999957679999999999860625899


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHCHHH
Q ss_conf             98732345124411212233699980089999999999723777899999853112268750048998712013300013
Q 002497          674 NRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSG  753 (915)
Q Consensus       674 ~rG~A~GFkLsSL~KL~dvKs~D~k~TLLhyVVe~Iir~e~~~l~~~~~~~~~~~~~~~~f~ed~e~~klgl~~V~~ls~  753 (915)
                        |+|+||+|++|.||.|+|++|+++|||||||+.+.+.                     +++           +..|.+
T Consensus       235 --~~A~GFkL~sL~kL~d~Ks~d~~~tLL~yiv~~~~~~---------------------~p~-----------l~~~~~  280 (411)
T d1ux5a_         235 --KQAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLN---------------------YPS-----------FNDFLS  280 (411)
T ss_dssp             --GCCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHH---------------------CGG-----------GGGHHH
T ss_pred             --CCCCEEEHHHHHHHHHCCCCCCCEEHHHHHHHHHHHH---------------------CCH-----------HHCCHH
T ss_conf             --8712352389887652117999801899999999986---------------------907-----------533287


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             34667974148989999999999999999999999877765--4211135568899999999999999999999999999
Q 002497          754 ELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIA--MKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMV  831 (915)
Q Consensus       754 EL~~V~kAAkid~e~L~sdv~kL~~~l~ki~~~l~~~~~~~--~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~  831 (915)
                      ||..|..|+++++++|.+++.+|++++.+++.+++......  .....++|..+|..|+..|+.++..++..++++.+.|
T Consensus       281 el~~v~~a~~~~~~~l~~~~~~L~~~l~~i~~~~~~~~~~~~~~~~~~d~f~~~~~~fl~~~~~~~~~l~~~~~~~~~~~  360 (411)
T d1ux5a_         281 ELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEF  360 (411)
T ss_dssp             HTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             78889988618999999999999999999999998620254000251116999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999965069987664681116799999999999999999986431
Q 002497          832 KEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINER  876 (915)
Q Consensus       832 k~l~~YFGEdp~k~ea~p~~fF~~l~dFl~~ldka~kEv~k~~er  876 (915)
                      ++++.|||||+... ..+.+||++|.+|+..|++|++|+.+..++
T Consensus       361 ~~~~~yfGEd~~~~-~~~~~fF~~~~~F~~~~~~a~~en~~~~e~  404 (411)
T d1ux5a_         361 ESLMHTYGEDSGDK-FAKISFFKKFADFINEYKKAQAQNLAAEEE  404 (411)
T ss_dssp             HHHHHHTTCCSSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999838998887-899999999999999999999999999999
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure