Citrus Sinensis ID: 002503

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910----
MEKKAKIKIAITIASLAAISILFTRQQRRRRKLNQCPQYSCYLQSEPKPQHNFKRVLADNSYSPFKHANKEKSSGSHPYELEITALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRTDVYTTIAQADSDVDCLNLSSSLPSPSPVVCSHLDDVERQVCNNVENLDDILLANLQKCLGPNGSCPLSVFNYVLPAKNNWELKNQSNKFVYKQNGVKVSRQVAKKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKKLEWYLTRDLAKLVEDNPPAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRIIPSCYRIHFPEQLKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLFIHKVADSRKAEARPGFSASITNFEAGVSPLQLRTAAMALLHHGPTMPSNRREELRRIVMRYYGGREISQEDLERALLVGMSPRERRRHAKKRGLSLKMSKPTDFPDRQQDSYPAVMVESATMDATKADNVLGLHAIETQKSGEKEGRSSLTESHESKPPTCSNGGIDQLVFSTIWKKMNSTSKVSDSKDDSVGNVDDECENSSVQNGFGSSSPTPNSKVSLLGHGPHGKQVVDYLLREYGEDGIRQFCQRWRQVFVEALHPHFLPAGWDVMHRI
ccccccccHHEEEccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccEEEEccHHHHHHHHHHHHccccEEEEcccccccccccccEEEEEEEccccEEEEccccccccccHHHHHcccccEEEEEEcHHHHHHHHHHccccccccccHHHHHHHccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHccccccHHccccccHHHHHHHHcccccccccccccccccccEEEEEccccccccccccccHHHHHccccccccccccEEEEccccccccccccccEEEccccccEEEccccccEEccccccHHHHHHcHHHHcccccccEEEEcccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHcccccccccccccccccEEcccccccccHHHHHccccccHHcccccccccccccccccEEEccHHHHHHHHHHHHcccEEEEEccccccHHHHcHEEEEEEccccccEEEEcHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHcccEEEccccHHHHHHHHccccHHHHHHHHHHcccccccHHcHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHcccccHHHHHcHHHHccccccccccHHHHHHHHHHHcccccccccccccccHEEccccccccccccccccccccccccccccHcccccccccccccccccccccEEEcccccEEEcccHHHHHHHHHcccHHHccccccEEEEEEccccccccccccEEEEEEccEEEEccccccEEEEEEccHHHHHHccHHHcccccccEEEEEccHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccEHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccEEcccccccccEEEEccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccEcccc
MEKKAKIKIAITIASLAAISILFTRQQRRrrklnqcpqyscylqsepkpqhnfkrvladnsyspfkhankekssgshpyeLEITAllenprpefdfsnvdldlqrsdsfVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEisilqpffadpgvckvfhgsdndvmwlQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVatnkflqredwrqrplpaeMLQYAQTDAHYLLYIAKCLVAELKQqgnensycpddkfnfvLEASRRSNTVCLQVYTKEIesypgeaaASSIFFRLLngqggvssiSSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIALAnkapanrtdvyttiaqadsdvdclnlssslpspspvvcshldDVERQVCNNVENLDDILLANLQkclgpngscplsvfnyvlpaknnwelknqsnkfvykqngvKVSRQVAKKASRDLFVqkfsckspvyhncriyandgrllcycdrkkleWYLTRDLAKlvednppaimllfepkgrpedegnefyIQSKKNIcvscgegnhylryriipscyrihfpeqlkshrshdivlLCVDCHEVAHAAAEKYKKQISAEFGIPLFIHKVAdsrkaearpgfsasitnfeagvSPLQLRTAAMALLhhgptmpsnRREELRRIVMRYYGGREISQEDLERALLVGMSPRERRRHAKKRglslkmskptdfpdrqqdsypavMVESatmdatkadnvLGLHAietqksgekegrssltesheskpptcsnggidqLVFSTIWKKmnstskvsdskddsvgnvddecenssvqngfgsssptpnskvsllghgphgkQVVDYLLREYGEDGIRQFCQRWRQVFVEAlhphflpagwdvmhri
MEKKAKIKIAITIASLAAISILFTRQQRRRRKLNQCPQYscylqsepkpqhNFKRVLADNSYSPFKHankekssgshPYELEITALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIALankapanrtDVYTTIAQADSDVDCLNLSSSLPSPSPVVCSHLDDVERQVCNNVENLDDILLANLQKCLGPNGSCPLSVFNYVLPAKNNWELKNQSNKFVYKQNGVKVSRQVAKKASRDLfvqkfsckspvyhnCRIYANDGRLLCYCDRKKLEWYLTRDLaklvednppAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRIIPSCYRIHFPEQLKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLFIHKVADSRKAEARPGFSASITNFEAGVSPLQLRTAAMALLhhgptmpsnrreELRRIVMRYYggreisqedlerallvgmsprerrrhakkrglslkmskptdfpdrqqdSYPAVMVESATMDATKADNVLGLHAIetqksgekegrssltesheskpptcsnggiDQLVFSTIWKKMNstskvsdskddsvgNVDDECENSSvqngfgsssptPNSKVSLLGHGPHGKQVVDYLLREYGEDGIRQFCQRWRQVFVEALHphflpagwdvMHRI
MEkkakikiaitiaslaaisilFTRQQRRRRKLNQCPQYSCYLQSEPKPQHNFKRVLADNSYSPFKHANKEKSSGSHPYELEITALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRTDVYTTIAQADSDVDClnlssslpspspVVCSHLDDVERQVCNNVENLDDILLANLQKCLGPNGSCPLSVFNYVLPAKNNWELKNQSNKFVYKQNGVKVSRQVAKKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKKLEWYLTRDLAKLVEDNPPAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRIIPSCYRIHFPEQLKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLFIHKVADSRKAEARPGFSASITNFEAGVSPLQLRTAAMALLHHGPTMPSNRREELRRIVMRYYGGREISQEDLERALLVGMSPRERRRHAKKRGLSLKMSKPTDFPDRQQDSYPAVMVESATMDATKADNVLGLHAIETQKSGEKEGRSSLTESHESKPPTCSNGGIDQLVFSTIWKKMnstskvsdskddsvgnvddECENSSVQNGFGSSSPTPNSKVSLLGHGPHGKQVVDYLLREYGEDGIRQFCQRWRQVFVEALHPHFLPAGWDVMHRI
******IKIAITIASLAAISILFTRQQRRRRKLNQCPQYSCYL***************************************ITALLE****EFDFSNVDLDLQRSDSFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRTDVYTTIAQADSDVDCLNL********PVVCSHLDDVERQVCNNVENLDDILLANLQKCLGPNGSCPLSVFNYVLPAKNNWELKNQSNKFVYKQNGVKVSRQVAKKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKKLEWYLTRDLAKLVEDNPPAIMLLFE*********NEFYIQSKKNICVSCGEGNHYLRYRIIPSCYRIHFPEQLKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLFIHKVAD***********ASITNFEAGVSPLQLRTAAMALLH************LRRIVMRYYGGREI*************************************************************************************************GIDQLVFSTIWK**************************************************HGKQVVDYLLREYGEDGIRQFCQRWRQVFVEALHPHFLPAGWDVM***
*********************************************EPKPQHNFKRVLADNSYSPFKHANKEKSSGSHPYELEITALLEN**************QRSDSFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIESYPGEAAASSIFFRL***********SVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRTDVYTTIAQADSDVDCLNLSSSLPSPSPVVCSHLDDVERQVCNNVENLDDILLAN*************SVFNYVLPAKNNWELKNQSNKFVYKQN*********************SCKSPVYHNCRIYANDGRLLCYCDRKKLEWYLTRDLAKLVEDNPPAIMLLF************FYIQSKKNICVSCGEGNHYLRYRIIPSCYRIHFPEQLKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLFIHKVADSR**********************QLRTAAMALLHH*******RREELRRIVMRYYGGREISQEDLERAL************************************************************************************************************************************************LLGHGPHGKQVVDYLLREYGEDGIRQFCQRWRQVFVEALHPHFLPAGWDVMHR*
MEKKAKIKIAITIASLAAISILFTRQQRRRRKLNQCPQYSCYLQSEPKPQHNFKRVLADNSYSPFKH********SHPYELEITALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRTDVYTTIAQADSDVDCLNLSSSLPSPSPVVCSHLDDVERQVCNNVENLDDILLANLQKCLGPNGSCPLSVFNYVLPAKNNWELKNQSNKFVYKQNGVKVSRQVAKKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKKLEWYLTRDLAKLVEDNPPAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRIIPSCYRIHFPEQLKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLFIHKVADSRKAEARPGFSASITNFEAGVSPLQLRTAAMALLHHGPTMPSNRREELRRIVMRYYGGREISQEDLERALLVGMSPR*********GLSLKMSKPTDFPDRQQDSYPAVMVESATMDATKADNVLGLHAIETQ*********************CSNGGIDQLVFSTIWKKM**************************************SKVSLLGHGPHGKQVVDYLLREYGEDGIRQFCQRWRQVFVEALHPHFLPAGWDVMHRI
**KKAKIKIAITIASLAAISILFTRQQRRRRKLNQCPQYSCYLQSEPKPQHNFKRVLADNSYSPFKHANKEKSSGSHPYELEITALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRTDVYTTIAQADSDVDCLNLSSSLPSPSPVVCSHLDDVERQVCNNVENLDDILLANLQKCLGPNGSCPLSVFNYVLPAKNNWE***************************DLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKKLEWYLTRDLAKLVEDNPPAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRIIPSCYRIHFPEQLKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLFIHKVADS************IT*FEAGVSPLQLRTAAMALLHHGPTMPSNRREELRRIVMRYYGGREISQEDLERALLVGMSPRERRRHAKKR**********************************************************TESHESKPPTCSNGGIDQLVFSTIWKKMNSTSKVSDS****************************NSKVSLLGHGPHGKQVVDYLLREYGEDGIRQFCQRWRQVFVEALHPHFLPAGWDV****
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEKKAKIKIAITIASLAAISILFTRQQRRRRKLNQCPQYSCYLQSEPKPQHNFKRVLADNSYSPFKHANKEKSSGSHPYELEITALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRTDVYTTIAQADSDVDCLNLSSSLPSPSPVVCSHLDDVERQVCNNVENLDDILLANLQKCLGPNGSCPLSVFNYVLPAKNNWELKNQSNKFVYKQNGVKVSRQVAKKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKKLEWYLTRDLAKLVEDNPPAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRIIPSCYRIHFPEQLKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLFIHKVADSRKAEARPGFSASITNFEAGVSPLQLRTAAMALLHHGPTMPSNRREELRRIVMRYYGGREISQEDLERALLVGMSPRERRRHAKKRGLSLKMSKPTDFPDRQQDSYPAVMVESATMDATKADNVLGLHAIETQKSGEKEGRSSLTESHESKPPTCSNGGIDQLVFSTIWKKMNSTSKVSDSKDDSVGNVDDECENSSVQNGFGSSSPTPNSKVSLLGHGPHGKQVVDYLLREYGEDGIRQFCQRWRQVFVEALHPHFLPAGWDVMHRI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query914 2.2.26 [Sep-21-2011]
Q10146777 Exosome complex exonuclea yes no 0.344 0.405 0.391 5e-52
P56960887 Exosome component 10 OS=M yes no 0.309 0.319 0.384 2e-50
Q01780885 Exosome component 10 OS=H yes no 0.314 0.324 0.373 4e-49
Q12149733 Exosome complex exonuclea yes no 0.354 0.442 0.352 1e-45
Q9NVH0621 Exonuclease 3'-5' domain- no no 0.250 0.368 0.344 8e-37
Q8VEG4496 Exonuclease 3'-5' domain- no no 0.237 0.437 0.361 5e-36
A6V8R6376 Ribonuclease D OS=Pseudom yes no 0.273 0.664 0.259 6e-14
B8EN54399 Ribonuclease D OS=Methylo yes no 0.184 0.423 0.317 2e-12
A5G127392 Ribonuclease D OS=Acidiph yes no 0.281 0.655 0.265 4e-12
A0KXU5388 Ribonuclease D OS=Shewane yes no 0.278 0.657 0.252 8e-12
>sp|Q10146|RRP6_SCHPO Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp6 PE=3 SV=2 Back     alignment and function desciption
 Score =  206 bits (525), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 127/324 (39%), Positives = 174/324 (53%), Gaps = 9/324 (2%)

Query: 72  KSSGSHPYELEITALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANALSKEFFF 131
           K+S  HPYE EI   +  P      + +D         +WV T+SQL+++   L      
Sbjct: 181 KNSLPHPYEPEIQNSVYPPWVSEMSNPIDTGSVDETEPIWVSTESQLSDMLKELQNSKEI 240

Query: 132 AVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDN 191
           AVD E H  RSF GF  L+QIS  ++D++VDT+ L +E+  L   F +P + KVFHG+  
Sbjct: 241 AVDLEHHDYRSFRGFVCLMQISNREKDWIVDTLELREELEALNVVFTNPNIIKVFHGATM 300

Query: 192 DVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLP 251
           D++WLQRDF +YVVNLFDT  A +VL      LA+LL+ YC    +K  Q  DWR RPLP
Sbjct: 301 DIIWLQRDFGLYVVNLFDTYYATKVLGFEGHGLAFLLQKYCDYDADKRYQMADWRIRPLP 360

Query: 252 AEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTK 311
            EML+YAQ+D HYLLYI   L  EL  +  E       K N +      S  + L+ Y  
Sbjct: 361 REMLKYAQSDTHYLLYIWDHLRNELISKSAER------KENLMQSVFNSSKQISLRKY-- 412

Query: 312 EIESY-PGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLS 370
           E+E Y P     +  +  +L   G    I      + R L  WRD +AR  DES+R+VL 
Sbjct: 413 ELEPYDPIYGLGTDGWRNVLTKFGSSKIIGREALMIYRALHDWRDSVARKEDESVRYVLP 472

Query: 371 DQAIIALANKAPANRTDVYTTIAQ 394
           ++ +IA+A   P    DV++   Q
Sbjct: 473 NRLLIAIAASKPVEAADVFSISKQ 496
Nuclear-specific catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and cryptic unstable transcripts (CUTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The catalytic inactive RNA exosome core complex of 9 subunits (Exo-9) is proposed to play a pivotal role in the binding and presentation of RNA for ribonucleolysis, and to serve as a scaffold for the association with catalytic subunits and accessory proteins or complexes. RRP6 has 3'-5' exonuclease activity which is not modulated upon association with Exo-9 suggesting that the complex inner RNA-binding path is not used to access its active site.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 3EC: .EC: 1EC: .EC: 1EC: 3EC: .EC: -
>sp|P56960|EXOSX_MOUSE Exosome component 10 OS=Mus musculus GN=Exosc10 PE=1 SV=2 Back     alignment and function description
>sp|Q01780|EXOSX_HUMAN Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2 Back     alignment and function description
>sp|Q12149|RRP6_YEAST Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP6 PE=1 SV=1 Back     alignment and function description
>sp|Q9NVH0|EXD2_HUMAN Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens GN=EXD2 PE=1 SV=2 Back     alignment and function description
>sp|Q8VEG4|EXD2_MOUSE Exonuclease 3'-5' domain-containing protein 2 OS=Mus musculus GN=Exd2 PE=2 SV=1 Back     alignment and function description
>sp|A6V8R6|RND_PSEA7 Ribonuclease D OS=Pseudomonas aeruginosa (strain PA7) GN=rnd PE=3 SV=2 Back     alignment and function description
>sp|B8EN54|RND_METSB Ribonuclease D OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rnd PE=3 SV=2 Back     alignment and function description
>sp|A5G127|RND_ACICJ Ribonuclease D OS=Acidiphilium cryptum (strain JF-5) GN=rnd PE=3 SV=1 Back     alignment and function description
>sp|A0KXU5|RND_SHESA Ribonuclease D OS=Shewanella sp. (strain ANA-3) GN=rnd PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query914
297739148935 unnamed protein product [Vitis vinifera] 0.978 0.956 0.667 0.0
225447009936 PREDICTED: uncharacterized protein LOC10 0.936 0.914 0.663 0.0
255566405977 3'-5' exonuclease, putative [Ricinus com 0.990 0.926 0.651 0.0
147856691951 hypothetical protein VITISV_035853 [Viti 0.947 0.910 0.634 0.0
449453692877 PREDICTED: uncharacterized protein LOC10 0.919 0.957 0.631 0.0
449493231877 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.919 0.957 0.630 0.0
297826687891 hypothetical protein ARALYDRAFT_320982 [ 0.935 0.959 0.598 0.0
356515280873 PREDICTED: uncharacterized protein LOC10 0.913 0.956 0.606 0.0
160892403892 RRP6-like protein 3 [Arabidopsis thalian 0.936 0.959 0.599 0.0
334184634872 RRP6-like protein 3 [Arabidopsis thalian 0.937 0.982 0.598 0.0
>gi|297739148|emb|CBI28799.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1232 bits (3188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/929 (66%), Positives = 723/929 (77%), Gaps = 35/929 (3%)

Query: 1   MEKKAKIKIAITIASLAAISILFTRQQRRRRKLNQCPQYSCYLQSEPKPQHNFKRVLADN 60
           ME K KIKI + IAS A +SI FT Q R+RR   +C Q SCYL +EPKPQ++FK VLADN
Sbjct: 1   MESKEKIKIVVAIASFAVLSIFFTAQYRKRR-YRKCTQSSCYLHTEPKPQYSFKLVLADN 59

Query: 61  SYSPFKH-----ANKEKSSGSHPYELEITALLENPRPEFDFSNVDLDLQRSDSFVWVETK 115
           SYS FKH     +N E S  SHPYE EI+ALLEN   EF F    +DL+ SDS+VWVET+
Sbjct: 60  SYSAFKHLKLGESNSETSLHSHPYEAEISALLENAEIEFSFGTESMDLKISDSYVWVETE 119

Query: 116 SQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQP 175
            QL ELA+ LSK+  FAVDTEQHSLRSFLGFTALIQIST+ EDYLVDTIALHD + +LQP
Sbjct: 120 LQLKELADVLSKQRVFAVDTEQHSLRSFLGFTALIQISTQNEDYLVDTIALHDTLDVLQP 179

Query: 176 FFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVA 235
            FA+P +CKVFHG+DNDV+WLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVA
Sbjct: 180 VFANPSICKVFHGADNDVLWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVA 239

Query: 236 TNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVL 295
           TNK LQREDWRQRPL  EML+YAQTDAHYLLYIA CL+AEL+Q  +ENS CPDDK  FVL
Sbjct: 240 TNKLLQREDWRQRPLSVEMLEYAQTDAHYLLYIANCLIAELRQHDSENSCCPDDKLRFVL 299

Query: 296 EASRRSNTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVT--QDLVRRLCAW 353
           EASRRSNTVCLQ+Y KEIE  PGE+AASSI  R LNGQGG+SS +     QDLVRRLC W
Sbjct: 300 EASRRSNTVCLQLYIKEIEISPGESAASSIISRHLNGQGGISSKACDLQFQDLVRRLCTW 359

Query: 354 RDLMARVHDESLRFVLSDQAIIALANKAPANRTDVYTTIAQADSDVDCLNLSSSLPSPSP 413
           RDLMARVHDESLR+VLSDQAIIALA+K P  + ++ T I+QAD +VD L+ SS LPSPSP
Sbjct: 360 RDLMARVHDESLRYVLSDQAIIALADKVPTTQKEICTLISQADLNVDSLSSSSILPSPSP 419

Query: 414 VVCSHLDDVERQVCNNVENLDDILLANLQKCLGPNGSCPLSVFNYVLPAKNNWELKNQSN 473
           VVCSHL+D      + +  LDD+ L  LQK LGP+GSCPLSVFNY + +K N +L   +N
Sbjct: 420 VVCSHLEDFNYLFQDKMGKLDDVFLEILQKHLGPDGSCPLSVFNYAILSKTNLKL---TN 476

Query: 474 KFVYKQNGVKVSRQVAKKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKKLEWYL 533
           + V KQNG+K S+QV +KASR+LFV+KFSCKSPVYHNCRI+A+DGRLLCYCDR+KLEWY+
Sbjct: 477 RLVSKQNGIKNSKQVGQKASRELFVKKFSCKSPVYHNCRIFASDGRLLCYCDRRKLEWYV 536

Query: 534 TRDLAKLVEDNPPAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRIIPSCY 593
            R LAKLV+DNP AIMLLFEPKGRPEDE N+FY+QSKKNICV CGE NHYLRYRIIPSCY
Sbjct: 537 RRGLAKLVDDNPLAIMLLFEPKGRPEDEDNDFYVQSKKNICVGCGERNHYLRYRIIPSCY 596

Query: 594 RIHFPEQLKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLFIHKVADSRKAEAR 653
           R+HFPE LKSHRSHDIVLLCVDCHEVAH+AAEKYKK+I+AEFGIPLF+ KV DSR+A+  
Sbjct: 597 RMHFPEHLKSHRSHDIVLLCVDCHEVAHSAAEKYKKKIAAEFGIPLFVQKVVDSREAQVA 656

Query: 654 PGFSAS-ITNFEAGVSPLQLRTAAMALLHHGPTMPSNRREELRRIVMRYYGGREISQEDL 712
              S S +   EAGVSPLQLRTAAMALL HGP MPS R EELR+ VM+YYGGREI++EDL
Sbjct: 657 SQLSTSEVNTVEAGVSPLQLRTAAMALLRHGPRMPSKRCEELRQTVMKYYGGREITEEDL 716

Query: 713 ERALLVGMSPRERRRHAKKRGLSLKMSKPTDFPDRQQDSYPAVMVESATMDATKADNVLG 772
           E+ALLVGMSP ER+R  +K+G+SLK SK   FP+++Q+S    M  S   +A K D   G
Sbjct: 717 EKALLVGMSPHERKRLERKKGMSLKHSKGAGFPNKEQESNARSMGTSPIDNALKVDGEGG 776

Query: 773 LHAIETQKSGEKEGRSSLTESHESKPPTCSNGGIDQLVFSTIWKKMNSTSKVSDSKDDSV 832
           L+  + +  G++E  + L  + E      +N   D+             S+ S+ KD  V
Sbjct: 777 LNTTKGEACGKQENGNDLEITMEVLASDSNNLSSDR-------------SETSEMKDMCV 823

Query: 833 GNVDDECENSSVQNGF---------GSSSPTPNSKVSLLGHGPHGKQVVDYLLREYGEDG 883
            + D+ CE+ S   G          G++SP  N K+SLLGHGPHGK+VVD+LL+EYGEDG
Sbjct: 824 MDTDN-CESRSQSEGTLDLFYPKSNGNASPKHNPKLSLLGHGPHGKEVVDHLLKEYGEDG 882

Query: 884 IRQFCQRWRQVFVEALHPHFLPAGWDVMH 912
           IRQFCQRWRQ FVEA+HP FLPAGWDVMH
Sbjct: 883 IRQFCQRWRQTFVEAIHPRFLPAGWDVMH 911

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225447009|ref|XP_002268685.1| PREDICTED: uncharacterized protein LOC100261955 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255566405|ref|XP_002524188.1| 3'-5' exonuclease, putative [Ricinus communis] gi|223536557|gb|EEF38203.1| 3'-5' exonuclease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147856691|emb|CAN79186.1| hypothetical protein VITISV_035853 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449453692|ref|XP_004144590.1| PREDICTED: uncharacterized protein LOC101204374 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449493231|ref|XP_004159228.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101225221 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297826687|ref|XP_002881226.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp. lyrata] gi|297327065|gb|EFH57485.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356515280|ref|XP_003526329.1| PREDICTED: uncharacterized protein LOC100791485 [Glycine max] Back     alignment and taxonomy information
>gi|160892403|gb|ABX52081.1| RRP6-like protein 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334184634|ref|NP_001189656.1| RRP6-like protein 3 [Arabidopsis thaliana] gi|330253589|gb|AEC08683.1| RRP6-like protein 3 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query914
TAIR|locus:504955936891 AT2G32415 [Arabidopsis thalian 0.791 0.811 0.646 3.2e-283
POMBASE|SPAC1F3.01777 rrp6 "exosome 3'-5' exoribonuc 0.343 0.404 0.396 2.4e-50
DICTYBASE|DDB_G0271572 1195 exosc10 "exosome component 10" 0.333 0.255 0.380 1.7e-46
UNIPROTKB|A7E323702 EXOSC10 "Uncharacterized prote 0.317 0.413 0.393 2.8e-46
ZFIN|ZDB-GENE-040426-781899 exosc10 "exosome component 10" 0.312 0.318 0.384 7.2e-45
UNIPROTKB|B4DKG8679 EXOSC10 "Exosome component 10" 0.317 0.427 0.374 7.3e-45
MGI|MGI:1355322887 Exosc10 "exosome component 10" 0.319 0.329 0.386 2.5e-44
MGI|MGI:1922485496 Exd2 "exonuclease 3'-5' domain 0.200 0.368 0.386 3.1e-44
UNIPROTKB|F1RHR9886 EXOSC10 "Uncharacterized prote 0.317 0.327 0.386 4.1e-44
CGD|CAL0000608786 RRP6 [Candida albicans (taxid: 0.328 0.381 0.365 4.6e-44
TAIR|locus:504955936 AT2G32415 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2480 (878.1 bits), Expect = 3.2e-283, Sum P(2) = 3.2e-283
 Identities = 479/741 (64%), Positives = 574/741 (77%)

Query:    24 TRQQRRRRKLNQCPQYS-CYLQSEPKPQHNFKRVLADNSYSPFKH--------ANKEKSS 74
             T  +RRR++  Q    S CYL SE KPQ  FKRVLADNSYS FKH        ++ EK S
Sbjct:    25 TEYRRRRQRRKQTSSLSSCYLHSELKPQFGFKRVLADNSYSEFKHLKLVDASSSSLEKPS 84

Query:    75 GSHPYELEITALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANALSKEFFFAVD 134
               HPYE EIT LLENP+ EF F   +  L+ SDS+VWVET+SQL ELA  L+KE  FAVD
Sbjct:    85 NGHPYETEITVLLENPQIEFGFLRGECSLEMSDSYVWVETESQLKELAEILAKEQVFAVD 144

Query:   135 TEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVM 194
             TEQHSLRSFLGFTALIQIST +ED+LVDTIALHD +SIL+P F+DP +CKVFHG+DNDV+
Sbjct:   145 TEQHSLRSFLGFTALIQISTHEEDFLVDTIALHDVMSILRPVFSDPNICKVFHGADNDVI 204

Query:   195 WLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEM 254
             WLQRDFHIYVVN+FDTAKACEVLSKPQ+SLAYLLET CGVATNK LQREDWRQRPL  EM
Sbjct:   205 WLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEM 264

Query:   255 LQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIE 314
             ++YA+TDAHYLLYIA  L  ELKQ   ++S  PDD+F+F+LEASRRSN  CLQ+YTKE E
Sbjct:   265 VRYARTDAHYLLYIADSLTTELKQLATDSS-SPDDRFHFLLEASRRSNMTCLQLYTKETE 323

Query:   315 SYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAI 374
              +PG AA+SSI +R LNG G  S+IS   ++LVR+LCAWRDLM R+HDES R+VLSDQAI
Sbjct:   324 DFPGSAASSSIIYRHLNGHGDKSNISLNAEELVRKLCAWRDLMGRIHDESTRYVLSDQAI 383

Query:   375 IALANKAPANRTDVYTTIAQADSDVDCXXXXXXXXXXXX-VVCSHLDDVERQVCNNVENL 433
             + L+ K P    ++Y TIA  D   +              V+CSHLDD+ + + + +  L
Sbjct:   384 VGLSCKQPTTTEEIYDTIAHIDLATESSPSLSSSVQSPYPVICSHLDDIYKMILDKLAKL 443

Query:   434 DDILLANLQKCLGPNGSCPLSVFNYVLPAKNNWELKNQSNKFVYKQNGVK-VSRQVAKKA 492
             DD+L   L+KCLG NG+CP+SVFNY L    N++ K  S+    KQNG K   +Q  +KA
Sbjct:   444 DDLLPVVLKKCLGTNGTCPISVFNYSLLV--NFKTKLSSHS-APKQNGHKNFKQQFTRKA 500

Query:   493 SRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKKLEWYLTRDLAKLVEDNPPAIMLLF 552
             SR+LFV+KFSCK+PVYHNCRIYANDGRLLCYCD++KLEWYL R LAKLVE+NPPAIMLLF
Sbjct:   501 SRELFVKKFSCKAPVYHNCRIYANDGRLLCYCDKRKLEWYLNRGLAKLVEENPPAIMLLF 560

Query:   553 EPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRIIPSCYRIHFPEQLKSHRSHDIVLL 612
             EPKGRPEDEGN+FYIQ+K+NICV CGEG HYLRYRIIPSCYR+HFPE LKSHRSHDIVLL
Sbjct:   561 EPKGRPEDEGNDFYIQTKRNICVGCGEGKHYLRYRIIPSCYRVHFPEHLKSHRSHDIVLL 620

Query:   613 CVDCHEVAHAAAEKYKKQISAEFGIPLFIHKVADSRKAEARPGF---SASITNFEAGVSP 669
             CVDCHEVAHAAAE+YKKQI+ EFGIPLF+ +V DS++A+         ++  + +AGVSP
Sbjct:   621 CVDCHEVAHAAAERYKKQIATEFGIPLFVRRVLDSKEAQGTSSLVEDESTGDSEDAGVSP 680

Query:   670 LQLRTAAMALLHHGPTMPSNRREELRRIVMRYYGGREISQEDLERALLVGMSPRERRRHA 729
             L LR+AAMALL HG  MPS+RREEL + V  YYGGR++S+EDLE+ALL+G+SP ERR+  
Sbjct:   681 LHLRSAAMALLRHGNRMPSSRREELLQTVKMYYGGRDLSEEDLEKALLIGLSPHERRKLE 740

Query:   730 KKRGLSLKMSKPTDFPDRQQD 750
             +K+G+S K S      D+Q+D
Sbjct:   741 RKKGVSFKHSAEVAGMDKQED 761
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005622 "intracellular" evidence=IEA
GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA
GO:0008408 "3'-5' exonuclease activity" evidence=IEA
POMBASE|SPAC1F3.01 rrp6 "exosome 3'-5' exoribonuclease subunit Rrp6 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271572 exosc10 "exosome component 10" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|A7E323 EXOSC10 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-781 exosc10 "exosome component 10" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B4DKG8 EXOSC10 "Exosome component 10" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1355322 Exosc10 "exosome component 10" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
MGI|MGI:1922485 Exd2 "exonuclease 3'-5' domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RHR9 EXOSC10 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
CGD|CAL0000608 RRP6 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.13LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query914
cd06147192 cd06147, Rrp6p_like_exo, DEDDy 3'-5' exonuclease d 1e-93
pfam01612172 pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease 9e-55
cd06142178 cd06142, RNaseD_exo, DEDDy 3'-5' exonuclease domai 4e-49
COG0349361 COG0349, Rnd, Ribonuclease D [Translation, ribosom 3e-43
smart00474172 smart00474, 35EXOc, 3'-5' exonuclease 6e-36
cd06129161 cd06129, RNaseD_like, DEDDy 3'-5' exonuclease doma 2e-33
TIGR01388367 TIGR01388, rnd, ribonuclease D 5e-25
cd06141170 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain o 2e-16
cd09018150 cd09018, DEDDy_polA_RNaseD_like_exo, DEDDy 3'-5' e 6e-15
PRK10829373 PRK10829, PRK10829, ribonuclease D; Provisional 9e-12
cd06146193 cd06146, mut-7_like_exo, DEDDy 3'-5' exonuclease d 5e-11
cd06148197 cd06148, Egl_like_exo, DEDDy 3'-5' exonuclease dom 5e-09
pfam0057068 pfam00570, HRDC, HRDC domain 2e-08
smart0034181 smart00341, HRDC, Helicase and RNase D C-terminal 4e-07
PRK05755880 PRK05755, PRK05755, DNA polymerase I; Provisional 4e-04
>gnl|CDD|99850 cd06147, Rrp6p_like_exo, DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins Back     alignment and domain information 
 Score =  292 bits (751), Expect = 1e-93
 Identities = 98/191 (51%), Positives = 126/191 (65%), Gaps = 3/191 (1%)

Query: 109 FVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHD 168
             +V+T+ +L EL   L      AVD E HS RS+LGFT L+QIST +EDY+VDT+ L D
Sbjct: 5   LTFVDTEEKLEELVEKLKNCKEIAVDLEHHSYRSYLGFTCLMQISTREEDYIVDTLKLRD 64

Query: 169 EISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLL 228
           ++ IL   F DP + KVFHG+D+D++WLQRDF +YVVNLFDT +A  VL+ P+ SLAYLL
Sbjct: 65  DMHILNEVFTDPNILKVFHGADSDIIWLQRDFGLYVVNLFDTGQAARVLNLPRHSLAYLL 124

Query: 229 ETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPD 288
           + YC V  +K  Q  DWR RPLP EM++YA+ D HYLLYI   L  EL ++ N       
Sbjct: 125 QKYCNVDADKKYQLADWRIRPLPEEMIKYAREDTHYLLYIYDRLRNELLERANAL---AP 181

Query: 289 DKFNFVLEASR 299
           +    VL  SR
Sbjct: 182 NLLESVLNCSR 192

Yeast Rrp6p and its human homolog, the polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100), are exosome-associated proteins involved in the degradation and processing of precursors to stable RNAs. Both proteins contain a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PM/Scl-100, an autoantigen present in the nucleolar compartment of the cell, reacts with autoantibodies produced by about 50% of patients with polymyositis-scleroderma overlap syndrome. Length = 192
>gnl|CDD|216604 pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease Back     alignment and domain information
>gnl|CDD|176654 cd06142, RNaseD_exo, DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins Back     alignment and domain information
>gnl|CDD|223426 COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|214681 smart00474, 35EXOc, 3'-5' exonuclease Back     alignment and domain information
>gnl|CDD|176650 cd06129, RNaseD_like, DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins Back     alignment and domain information
>gnl|CDD|130455 TIGR01388, rnd, ribonuclease D Back     alignment and domain information
>gnl|CDD|176653 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information
>gnl|CDD|176656 cd09018, DEDDy_polA_RNaseD_like_exo, DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins Back     alignment and domain information
>gnl|CDD|236771 PRK10829, PRK10829, ribonuclease D; Provisional Back     alignment and domain information
>gnl|CDD|176655 cd06146, mut-7_like_exo, DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins Back     alignment and domain information
>gnl|CDD|99851 cd06148, Egl_like_exo, DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins Back     alignment and domain information
>gnl|CDD|201312 pfam00570, HRDC, HRDC domain Back     alignment and domain information
>gnl|CDD|128635 smart00341, HRDC, Helicase and RNase D C-terminal Back     alignment and domain information
>gnl|CDD|235591 PRK05755, PRK05755, DNA polymerase I; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 914
KOG2206687 consensus Exosome 3'-5' exoribonuclease complex, s 100.0
PRK10829373 ribonuclease D; Provisional 100.0
COG0349361 Rnd Ribonuclease D [Translation, ribosomal structu 100.0
TIGR01388367 rnd ribonuclease D. This model describes ribonucle 100.0
cd06129161 RNaseD_like DEDDy 3'-5' exonuclease domain of RNas 99.97
cd06146193 mut-7_like_exo DEDDy 3'-5' exonuclease domain of C 99.96
cd06141170 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and 99.95
cd06148197 Egl_like_exo DEDDy 3'-5' exonuclease domain of Dro 99.94
PF01612176 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 99.93
cd06142178 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribon 99.83
cd06147192 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of y 99.8
smart00474172 35EXOc 3'-5' exonuclease. 3\' -5' exonuclease proo 99.79
PRK05755880 DNA polymerase I; Provisional 99.74
PRK14975553 bifunctional 3'-5' exonuclease/DNA polymerase; Pro 99.67
cd09018150 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease 99.63
cd00007155 35EXOc 3'-5' exonuclease. The 35EXOc domain is res 99.62
cd06140178 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' 99.57
cd06139193 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease 99.41
KOG4373319 consensus Predicted 3'-5' exonuclease [General fun 99.39
KOG2207617 consensus Predicted 3'-5' exonuclease [Replication 99.26
COG0749593 PolA DNA polymerase I - 3'-5' exonuclease and poly 99.19
TIGR00593887 pola DNA polymerase I. This family is based on the 99.16
PF0057068 HRDC: HRDC domain Bloom syndrome. Werner syndrome. 98.93
smart0034181 HRDC Helicase and RNase D C-terminal. Hypothetical 98.87
cd06128151 DNA_polA_exo DEDDy 3'-5' exonuclease domain of fam 98.71
KOG4373319 consensus Predicted 3'-5' exonuclease [General fun 97.69
cd0612596 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas 97.64
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 97.26
PRK06310250 DNA polymerase III subunit epsilon; Validated 96.07
PRK06063313 DNA polymerase III subunit epsilon; Provisional 95.84
PRK07740244 hypothetical protein; Provisional 95.69
PRK06807313 DNA polymerase III subunit epsilon; Validated 95.58
KOG2405458 consensus Predicted 3'-5' exonuclease [Replication 95.35
cd06144152 REX4_like DEDDh 3'-5' exonuclease domain of RNA ex 95.32
PRK08517257 DNA polymerase III subunit epsilon; Provisional 95.18
TIGR01298200 RNaseT ribonuclease T. in gamma-subdivision Proteo 95.09
PRK07883557 hypothetical protein; Validated 95.06
cd06131167 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl 95.03
TIGR01405 1213 polC_Gram_pos DNA polymerase III, alpha chain, Gra 94.95
PF14239176 RRXRR: RRXRR protein 94.88
cd06149157 ISG20 DEDDh 3'-5' exonuclease domain of Interferon 94.7
PRK05168211 ribonuclease T; Provisional 94.61
cd06145150 REX1_like DEDDh 3'-5' exonuclease domain of RNA ex 94.56
PRK07942232 DNA polymerase III subunit epsilon; Provisional 94.48
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 94.44
cd06127159 DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh 94.31
TIGR00573217 dnaq exonuclease, DNA polymerase III, epsilon subu 94.06
TIGR01406225 dnaQ_proteo DNA polymerase III, epsilon subunit, P 94.03
PRK09145202 DNA polymerase III subunit epsilon; Validated 93.92
cd05160199 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain 93.89
PF13482164 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 93.77
PRK05601377 DNA polymerase III subunit epsilon; Validated 93.68
PRK05711240 DNA polymerase III subunit epsilon; Provisional 93.58
smart00479169 EXOIII exonuclease domain in DNA-polymerase alpha 93.41
PRK06309232 DNA polymerase III subunit epsilon; Validated 93.26
COG2176 1444 PolC DNA polymerase III, alpha subunit (gram-posit 93.13
cd06130156 DNA_pol_III_epsilon_like an uncharacterized bacter 92.91
KOG2249280 consensus 3'-5' exonuclease [Replication, recombin 92.75
cd06137161 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the 92.7
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 92.52
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 92.33
KOG2405458 consensus Predicted 3'-5' exonuclease [Replication 91.93
PRK09146239 DNA polymerase III subunit epsilon; Validated 91.74
cd06136177 TREX1_2 DEDDh 3'-5' exonuclease domain of three pr 91.41
cd05780195 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom 90.53
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 90.34
PRK08074 928 bifunctional ATP-dependent DNA helicase/DNA polyme 90.3
cd06143174 PAN2_exo DEDDh 3'-5' exonuclease domain of the euk 90.28
PRK00448 1437 polC DNA polymerase III PolC; Validated 88.86
PF1339166 HNH_2: HNH endonuclease 86.47
PF06147200 DUF968: Protein of unknown function (DUF968); Inte 86.26
cd06134189 RNaseT DEDDh 3'-5' exonuclease domain of RNase T. 86.17
PF0184447 HNH: HNH endonuclease; InterPro: IPR002711 HNH end 84.43
cd0008557 HNHc HNH nucleases; HNH endonuclease signature whi 81.29
>KOG2206 consensus Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2e-62  Score=550.58  Aligned_cols=351  Identities=39%  Similarity=0.617  Sum_probs=307.9

Q ss_pred             cCCCCCccccccccCCCCCCCCCccCCC---CC-----CCCCCCcHHHHHhccCCCCCCcccCCC-CCCCCCCCCeEEec
Q 002503           43 LQSEPKPQHNFKRVLADNSYSPFKHANK---EK-----SSGSHPYELEITALLENPRPEFDFSNV-DLDLQRSDSFVWVE  113 (914)
Q Consensus        43 ~~~~~kPQ~~F~~~~~dn~~~pf~p~~~---~~-----~~~~hPY~~Ei~~~~~~p~~~~~~~~~-~~~p~~~~~~~~Id  113 (914)
                      ..++.|||+.|..++ ||+..||.|.+.   +.     ..+.|||+||+.++. .++.+++...+ ...|.+.+++.||+
T Consensus       120 ~~~l~kpq~~f~~~i-dn~~~pf~~~~~~~vEr~e~~~~~~~hpye~e~~~f~-~~~~~le~~~~~~~~~le~T~~~~I~  197 (687)
T KOG2206|consen  120 TMNLLKPQVRFVEGI-DNLHHPFCSMLASEVERLEDRPREVQHPYEDEERHFR-QIDKQLEEGEPRKSSPLEITPKVWIC  197 (687)
T ss_pred             cccccchHHHHhhcc-ccccCCchhhhhhhhhchhhcchhccCcchhhhhhhc-ccchhhhcccccCCCcccccCceeee
Confidence            557999999999875 999999999864   22     247899999999984 45555544332 34566778899999


Q ss_pred             CHHHHHHHHHHHhccCcceEEEeecccCCCCCcEEEEEEEeCCceEEEeCCCccchhhhHHHhhcCCCCeEEEechhHhH
Q 002503          114 TKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDV  193 (914)
Q Consensus       114 T~e~L~~lle~L~~a~~IAVDtE~~s~rsy~g~lcLLQLSt~~~~yLID~laL~d~l~~L~elLaDp~IvKV~Hgak~Dl  193 (914)
                      |..+|.++.+.+....++|+|+|+|++++|.|++|||||+|++++||||++.+++.++.|+++|+||+|+|||||++.|+
T Consensus       198 t~~el~~l~~~l~~~~Efavdlehhsyrsf~gltclmqISTr~ed~iIDt~~l~~~i~~l~e~fsdp~ivkvfhgaD~di  277 (687)
T KOG2206|consen  198 TLGELEALPEILDSVIEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTFKLRDHIGILNEVFSDPGIVKVFHGADTDI  277 (687)
T ss_pred             chHHHHHHHHHHhhhhhhhhhccccchhhhcCceeEEEeeccchhheehhHHHHHHHHHhhhhccCCCeEEEEecCccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCcCeEeehhhHHHHcCCCCCCHHHHHHHHcCCcCCcccccccccCCCCCHHHHHHHHHchHHHHHHHHHHH
Q 002503          194 MWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLV  273 (914)
Q Consensus       194 ~~LqrdfGI~~~nlFDTqlAAyLLg~~~~SLa~Lle~yLgv~ldK~~q~sDWr~RPLseeql~YAa~Da~yLL~Lyd~L~  273 (914)
                      .||||+||||++|+|||..|+++||.+.+||++|++.|||+..+|.+|++|||+|||+++|+.||+.|+|||++||+.|+
T Consensus       278 iwlqrdfgiyvvnLfdt~~a~r~L~~~r~sL~~ll~~~~~v~~nk~yqladwR~rpLp~~Mv~yar~dthyllyiyD~lr  357 (687)
T KOG2206|consen  278 IWLQRDFGIYVVNLFDTIQASRLLGLPRPSLAYLLECVCGVLTNKKYQLADWRIRPLPEEMVRYAREDTHYLLYIYDVLR  357 (687)
T ss_pred             hhhhccceEEEEechhhHHHHHHhCCCcccHHHHHHHHHhhhhhhhhhhchhccccCcHHHHHHHhhcchhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCcchHHHHHHHhhhhhhhhhhhhhccccCCCcccchhhHHHHhhcCCCCCCCCCHHHHHHHHHHHHH
Q 002503          274 AELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAW  353 (914)
Q Consensus       274 ~eL~e~g~~~~~~~~~~~~~v~e~~~~s~~~~l~~Y~k~~~~~pg~~~~~~~~~r~l~~~~~~~~~~~~~l~vlr~L~~W  353 (914)
                      .+|.+.+....           -.+.++..+|...|.++.++..+   ++.++. .      ..+++.+|+.+|++|++|
T Consensus       358 ~el~~~a~~~~-----------~~~~~~~d~c~~~~~k~~~~~~s---y~~v~~-~------q~~ln~~q~~~l~~L~~w  416 (687)
T KOG2206|consen  358 KELKRLAKGRA-----------VTYSESRDMCTNGYKKKTFCTKS---YLEVED-I------QSRLNSSQLDVLRALLRW  416 (687)
T ss_pred             HHHHHHhcccc-----------cccchhhhhhhcceecccCCCcc---hHhHHH-H------HhccchhHHHHHHHHHHH
Confidence            99988763221           12236678999999998875432   222221 1      123678999999999999


Q ss_pred             HHHHHHHhCCCcCcccChHHHHHHHHhCCCCHHHHHHHHhhcCCcccccccCCCCCCCChhhcccHHHHHHHHHHHhhh
Q 002503          354 RDLMARVHDESLRFVLSDQAIIALANKAPANRTDVYTTIAQADSDVDCLNLSSSLPSPSPVVCSHLDDVERQVCNNVEN  432 (914)
Q Consensus       354 RD~~AR~~Des~~~VL~d~~Ll~LA~~~P~s~~eL~~~i~~~d~~~~~~~l~~~~~~~sp~Vr~hl~eL~~lI~~a~~~  432 (914)
                      ||.+||.+|||++|||||++|++||+.+|.+..+|++++.                +.+|+|++|+++++.||+.+...
T Consensus       417 Rd~iARaeDES~~yVlpN~~ll~l~e~~P~~v~gl~~~ln----------------~~~p~vkq~~~~~~~ii~~a~~~  479 (687)
T KOG2206|consen  417 RDFIARAEDESVHYVLPNDQLLKLAEERPDTVDGLLGGLN----------------RLSPLVKQNVMDFLYIIRSAGRG  479 (687)
T ss_pred             HHHHHhhccCCCceecccHHHHHHHHHCCccHHHHHHhcc----------------CCCHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999998752                35699999999999999988766

>PRK10829 ribonuclease D; Provisional Back     alignment and domain information
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01388 rnd ribonuclease D Back     alignment and domain information
>cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins Back     alignment and domain information
>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins Back     alignment and domain information
>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information
>cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins Back     alignment and domain information
>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides Back     alignment and domain information
>cd06142 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins Back     alignment and domain information
>cd06147 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins Back     alignment and domain information
>smart00474 35EXOc 3'-5' exonuclease Back     alignment and domain information
>PRK05755 DNA polymerase I; Provisional Back     alignment and domain information
>PRK14975 bifunctional 3'-5' exonuclease/DNA polymerase; Provisional Back     alignment and domain information
>cd09018 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins Back     alignment and domain information
>cd00007 35EXOc 3'-5' exonuclease Back     alignment and domain information
>cd06140 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases Back     alignment and domain information
>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases Back     alignment and domain information
>KOG4373 consensus Predicted 3'-5' exonuclease [General function prediction only] Back     alignment and domain information
>KOG2207 consensus Predicted 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00593 pola DNA polymerase I Back     alignment and domain information
>PF00570 HRDC: HRDC domain Bloom syndrome Back     alignment and domain information
>smart00341 HRDC Helicase and RNase D C-terminal Back     alignment and domain information
>cd06128 DNA_polA_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases Back     alignment and domain information
>KOG4373 consensus Predicted 3'-5' exonuclease [General function prediction only] Back     alignment and domain information
>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PRK06310 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK07740 hypothetical protein; Provisional Back     alignment and domain information
>PRK06807 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG2405 consensus Predicted 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>PRK08517 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>TIGR01298 RNaseT ribonuclease T Back     alignment and domain information
>PRK07883 hypothetical protein; Validated Back     alignment and domain information
>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins Back     alignment and domain information
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>PF14239 RRXRR: RRXRR protein Back     alignment and domain information
>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>PRK05168 ribonuclease T; Provisional Back     alignment and domain information
>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins Back     alignment and domain information
>PRK07942 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family Back     alignment and domain information
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family Back     alignment and domain information
>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial Back     alignment and domain information
>PRK09145 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A Back     alignment and domain information
>PRK05601 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK05711 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases Back     alignment and domain information
>PRK06309 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] Back     alignment and domain information
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III Back     alignment and domain information
>KOG2249 consensus 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>KOG2405 consensus Predicted 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>PRK09146 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins Back     alignment and domain information
>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2 Back     alignment and domain information
>PRK00448 polC DNA polymerase III PolC; Validated Back     alignment and domain information
>PF13391 HNH_2: HNH endonuclease Back     alignment and domain information
>PF06147 DUF968: Protein of unknown function (DUF968); InterPro: IPR010373 This is a family of uncharacterised prophage proteins that are also found in bacteria and humans Back     alignment and domain information
>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T Back     alignment and domain information
>PF01844 HNH: HNH endonuclease; InterPro: IPR002711 HNH endonuclease is found in bacteria and viruses [, , ] Back     alignment and domain information
>cd00085 HNHc HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query914
3saf_A428 Crystal Structure Of The Human Rrp6 Catalytic Domai 2e-49
3sah_A428 Crystal Structure Of The Human Rrp6 Catalytic Domai 7e-49
2hbj_A410 Structure Of The Yeast Nuclear Exosome Component, R 2e-45
1yt3_A375 Crystal Structure Of Escherichia Coli Rnase D, An E 3e-10
3cym_A440 Crystal Structure Of Protein Bad_0989 From Bifidoba 2e-09
>pdb|3SAF|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With D313n Mutation In The Active Site Length = 428 Back     alignment and structure 
Iteration: 1

 Score =  194 bits (492), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/318 (36%), Positives = 176/318 (55%), Gaps = 28/318 (8%)
Query: 71  EKSSGSHPYELEIT------ALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANA 124
           E+   +HPY+ E+       A+L+ P+P+  +  ++          ++ +  +L EL   
Sbjct: 72  EQDMFAHPYQYELNHFTPADAVLQKPQPQL-YRPIE-----ETPCHFISSLDELVELNEK 125
Query: 125 LSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCK 184
           L     FAV+ E HS RSFLG T L+QIST  ED+++DT+ L  ++ IL     DP + K
Sbjct: 126 LLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVK 185
Query: 185 VFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQRED 244
           VFHG+D+D+ WLQ+DF +YVVN+FDT +A  +L+  + SL +LL+ YC V +NK  Q  D
Sbjct: 186 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLAD 245
Query: 245 WRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTV 304
           WR RPLP EML YA+ D HYLLYI   +  E+ ++GN        +   V +   RS  +
Sbjct: 246 WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPV----QLQVVWQ---RSRDI 298
Query: 305 CLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDES 364
           CL+ + K I  +  E+     +  L   Q    +   +T    + L AWRD  AR  DES
Sbjct: 299 CLKKFIKPI--FTDES-----YLELYRKQKKHLNTQQLTA--FQLLFAWRDKTARREDES 349
Query: 365 LRFVLSDQAIIALANKAP 382
             +VL +  ++ +A + P
Sbjct: 350 YGYVLPNHMMLKIAEELP 367
>pdb|3SAH|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With Y436a Mutation In The Catalytic Site Length = 428 Back     alignment and structure
>pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p, Reveals An Interplay Between The Active Site And The Hrdc Domain Length = 410 Back     alignment and structure
>pdb|1YT3|A Chain A, Crystal Structure Of Escherichia Coli Rnase D, An Exoribonuclease Involved In Structured Rna Processing Length = 375 Back     alignment and structure
>pdb|3CYM|A Chain A, Crystal Structure Of Protein Bad_0989 From Bifidobacterium Adolescentis Length = 440 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query914
2hbj_A410 Exosome complex exonuclease RRP6; RNA metabolism, 1e-104
3saf_A428 Exosome component 10; exoribonuclease, RNA exosome 2e-99
1yt3_A375 Ribonuclease D, RNAse D; exoribonuclease, exonucle 1e-68
3cym_A440 Uncharacterized protein BAD_0989; structural genom 3e-65
2e6m_A208 Werner syndrome ATP-dependent helicase homolog; AP 2e-35
1vk0_A206 Hypothetical protein; homohexamer, AT5G06450, stru 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
3pv8_A592 DNA polymerase I; DNA polymerase I, protein-DNA co 1e-05
2kfn_A605 Klenow fragment of DNA polymerase I; complex (poly 2e-04
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 4e-04
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* Length = 410 Back     alignment and structure
 Score =  327 bits (841), Expect = e-104
 Identities = 124/367 (33%), Positives = 165/367 (44%), Gaps = 38/367 (10%)

Query: 47  PKPQHNFKRVLADNSYS-PFKHANKEK---------------------SSGSHPYELEIT 84
            KPQ  FK  + DNS S PF    KEK                     S   HPYE EI 
Sbjct: 4   EKPQLKFKSPI-DNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 62

Query: 85  ALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFL 144
               +P        +          +WV+T ++L  +   L      AVD E H  RS+ 
Sbjct: 63  HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYY 122

Query: 145 GFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYV 204
           G   L+QIST + DYLVDT+ L + + IL   F +P + KVFHG+  D++WLQRD  +YV
Sbjct: 123 GIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYV 182

Query: 205 VNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHY 264
           V LFDT  A + +  P+ SLAYLLE +    T+K  Q  DWR RPL   M   A+ D H+
Sbjct: 183 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHF 242

Query: 265 LLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIESYPGEAAASS 324
           LL I   L  +L +           K   VL  SR    V  + +          ++   
Sbjct: 243 LLNIYDQLRNKLIESN---------KLAGVLYESRN---VAKRRFEYSKYRPLTPSSEVY 290

Query: 325 IFFRLLNG---QGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKA 381
                 +         +I    + LVR L  WRDL+AR  DES RFV+ +Q + AL    
Sbjct: 291 SPIEKESPWKILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYT 350

Query: 382 PANRTDV 388
           P +   V
Sbjct: 351 PTDVIGV 357
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A Length = 428 Back     alignment and structure
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 Length = 375 Back     alignment and structure
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 440 Back     alignment and structure
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Length = 208 Back     alignment and structure
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A Length = 206 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 3hp6_A* 2hhw_A* 3ez5_A* 2hvh_A* 2hvi_A* 3eyz_A* 1nk4_A* 1l3t_A* 1l3u_A* 1l3v_A* 1l5u_A* ... Length = 592 Back     alignment and structure
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* Length = 605 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 914
d2hbka2292 c.55.3.5 (A:129-420) Exosome complex exonuclease R 3e-43
d1vk0a_206 c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thal 2e-30
d1yt3a3193 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domai 9e-24
d1kfsa1195 c.55.3.5 (A:324-518) Exonuclease domain of prokary 2e-17
d2hhva1171 c.55.3.5 (A:298-468) Exonuclease domain of prokary 4e-13
d2hbka196 a.60.8.4 (A:421-516) Exosome complex exonuclease R 7e-07
d1yt3a1101 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia c 1e-05
d2cpra1113 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 3e-05
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 292 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exosome complex exonuclease RRP6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  156 bits (396), Expect = 3e-43
 Identities = 98/287 (34%), Positives = 131/287 (45%), Gaps = 33/287 (11%)

Query: 47  PKPQHNFKRVLADNSYSPFKHANKEK---------------------SSGSHPYELEITA 85
            KPQ  FK  + ++   PF    KEK                     S   HPYE EI  
Sbjct: 2   EKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDH 61

Query: 86  LLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLG 145
              +P        +          +WV+T ++L  +   L      AVD E H  RS+ G
Sbjct: 62  QEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYG 121

Query: 146 FTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVV 205
              L+QIST + DYLVDT+ L + + IL   F +P + KVFHG+  D++WLQRD  +YVV
Sbjct: 122 IVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVV 181

Query: 206 NLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYL 265
            LFDT  A + +  P+ SLAYLLE +    T+K  Q  DWR RPL   M   A+ D H+L
Sbjct: 182 GLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHFL 241

Query: 266 LYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKE 312
           L I   L  +L +           K   VL  SR    V  + +   
Sbjct: 242 LNIYDQLRNKLIESN---------KLAGVLYESRN---VAKRRFEYS 276
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 206 Back     information, alignment and structure
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} Length = 195 Back     information, alignment and structure
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} Length = 171 Back     information, alignment and structure
>d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 96 Back     information, alignment and structure
>d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]} Length = 101 Back     information, alignment and structure
>d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query914
d2hbka2292 Exosome complex exonuclease RRP6 {Baker's yeast (S 100.0
d1yt3a3193 Ribonuclease D, catalytic domain {Escherichia coli 100.0
d1vk0a_206 Hypothetical protein AT5G06450 {Thale-cress (Arabi 99.94
d1kfsa1195 Exonuclease domain of prokaryotic DNA polymerase { 99.91
d2hhva1171 Exonuclease domain of prokaryotic DNA polymerase { 99.81
d2cpra1113 Exosome component 10, EXOSC10 {Human (Homo sapiens 99.36
d2hbka196 Exosome complex exonuclease RRP6 domain {Baker's y 99.33
d1yt3a1101 Ribonuclease D {Escherichia coli [TaxId: 562]} 99.24
d1wuda177 HRDC domain from RecQ helicase {Escherichia coli [ 98.31
d2e1fa194 Werner syndrome ATP-dependent helicase, WRN {Human 98.0
d1wlja_173 Interferon-stimulated gene 20 kDa protein, ISG20 { 97.5
d1x9ma1204 Exonuclease domain of T7 DNA polymerase {Bacteriop 96.87
d3b6oa1226 Three prime repair exonuclease 1, TREX1 {Mouse (Mu 87.7
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exosome complex exonuclease RRP6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=409.47  Aligned_cols=256  Identities=39%  Similarity=0.594  Sum_probs=229.1

Q ss_pred             CCCCCCCCCCCCCCCCC-CCCCCCCCCC---------------------CCCCCCCHHHHHHCCCCCCCCCCCCCC-CCC
Q ss_conf             77742234644778999-9973488989---------------------999999399998633799988655787-778
Q 002503           46 EPKPQHNFKRVLADNSY-SPFKHANKEK---------------------SSGSHPYELEITALLENPRPEFDFSNV-DLD  102 (914)
Q Consensus        46 ~~kPQ~~F~~~~~dns~-~pf~p~~~~~---------------------~~~~hPY~~Ei~~l~~~p~~~~~~~~~-~~~  102 (914)
                      |+|||+.|++++ |||. +||+|++.+.                     ..+.|||++||.++. +|..++...++ +..
T Consensus         1 i~~pq~~f~~~~-dn~~~~pf~p~l~~k~~a~~~l~~~~~~~~~~~~~~~~~~hpy~~ei~~~~-~~~~~~~~~~~~~~~   78 (292)
T d2hbka2           1 VEKPQLKFKSPI-DNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQE-YSPEILQIREEIPSK   78 (292)
T ss_dssp             CCCGGGGCSSCC-CCCCCSCCCCCCSCCSSCSSCHHHHSSCCCCCSSSCSCCCCTTHHHHHHSC-CCGGGSSCCCCCCCC
T ss_pred             CCCHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHCCC-CCHHHCCCCCCCCCC
T ss_conf             998044148889-998889874120368776754345413566666777567998799995088-985662768888999


Q ss_pred             CCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             88998929966999999999997025741698742146788991899999848926999677754115647872419997
Q 002503          103 LQRSDSFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGV  182 (914)
Q Consensus       103 p~~~~~~~~IdT~e~L~~lle~L~~a~~IAVDlE~~s~rsy~g~lcLIQISt~~~~yIID~laL~d~l~~L~eiLaDp~I  182 (914)
                      |..+++++||+|.++|.++++.|..++.||||+||++.++|.|.+|+|||++++.+|+||+++++..+..|+++|+|++|
T Consensus        79 ~~~~t~~~~Vdt~e~L~~li~~L~~~~~iavDtE~~~~~s~~g~l~LiQiat~~~~~iiD~~~l~~~l~~L~~ll~d~~I  158 (292)
T d2hbka2          79 SWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSI  158 (292)
T ss_dssp             CGGGCCCEEECSHHHHHHHHHHHTTCSEEEEEEEEECSSSSSCEEEEEEEECSSCEEEEETTTTTTTGGGGHHHHTCTTS
T ss_pred             CCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCE
T ss_conf             97778768968999999999998559957999886768515771799999838962899832244545777898736685


Q ss_pred             EEEEECHHHHHHHHHHHCCCCCCEEEEHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCH
Q ss_conf             39984206859999996199737073036588880999988999999982996784554344668999998899998745
Q 002503          183 CKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDA  262 (914)
Q Consensus       183 vKV~Hgak~Di~~LqrdfGI~v~niFDTqlAAyLLg~~~~SLa~Lve~yLgv~ldK~~Q~sDWr~RPLs~eql~YAa~Da  262 (914)
                      +||+||+++|+.||++++|++++++|||++|+++|+..++||++|+++|||+.++|.+|++||+.|||+++|+.|||.||
T Consensus       159 ~KV~H~~~~Di~~L~~~~g~~~~n~fDT~~aa~~l~~~~~sL~~L~~~yl~~~ldK~~q~SdW~~RPLs~~qi~YAa~Da  238 (292)
T d2hbka2         159 VKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADT  238 (292)
T ss_dssp             EEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCSCCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHHHHHHHH
T ss_pred             EEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             77762267654566412355566327889999873864433677898765104555210055456769999999999979


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99999999999999982999998996238899999644344565443123347
Q 002503          263 HYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIES  315 (914)
Q Consensus       263 ~yLL~Lyd~L~~eL~e~g~~~~~~p~~~~~~v~e~~~~s~~~~l~~Y~k~~~~  315 (914)
                      +||++||+.|+++|.+.|         ++.|+.++++   .+|++.|+++.+.
T Consensus       239 ~~Ll~ly~~L~~~L~~~~---------~l~~v~~e~~---~~~~~~~e~~~~~  279 (292)
T d2hbka2         239 HFLLNIYDQLRNKLIESN---------KLAGVLYESR---NVAKRRFEYSKYR  279 (292)
T ss_dssp             HTHHHHHHHHHHHHHHTT---------CHHHHHHHHH---HHHHCEECCGGGC
T ss_pred             HHHHHHHHHHHHHHHHCC---------CHHHHHHHHH---HHHHHHHCCCCCC
T ss_conf             999999999999999767---------7799999999---9999984457778
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} Back     information, alignment and structure
>d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure