Citrus Sinensis ID: 002506

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910----
MGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEADKAVVRRTSSLFSHSSDQPHKSLSREHGNLMSWPEHFYKARQQKQNSEETDRKANSLSARAMQLSIFGNMVDVQRRSRSFATGTQTMQSHSLSFPSIPSHLNRRLVSVRSEGATTVREKLEVSRSTGQIPAPPSQNAGANESHVIDYSSDDSGAEDELIVRIDSPSLLSFPQDS
ccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccccccHHHHHHccccEEEccccEEEcccccccEEEEEEEEEEEEEEcccccccccccccccccHHHHHHHHcccccEEEEEEccEEEEEEEEHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccEEEEEEcEEEEEcccEEEEEEEEEEEEcccccEEEccccccccccccccccccccccccccEEEEEccccEEEEEEEEEEEEcccccccHHHHHcccccccccccccccccccccccccccccccccccccccccHHHccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEcccccccccccc
ccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHEEHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHEEEEEHcHHHHHHHHHHHHHcccccccccccccccccHEHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccHHHHccHHHHHHHHHccHHHEEccccEEEEccccccEEEEEEccEEEEEEEccccccccccccccccHHHHHHHHcccccHHHHHcccEEEEEEEcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccEEEEEcccEEEEccccEEEEEEcEEcccccccEEcccccEEccccccccccccccccccEccEcccccEEEEEEEEEEEEEEcccccccHHHccccccccccccccccccccHHccccccccccccccccccccHHHHccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEcccc
MGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFtaqegadvSGVLTVMTLGMFYAAVARTafkgesqqSLHYFWEMVAYIANTLIFILSGVVIAegilgndkifqnhgnSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVkrssggsslitsetgtLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKtfgdlgddeelgpvdwptvKRYIRCLndlegvpmhphsasetgdsldptnlRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNelcdwrglkdnvsfpnyykflqtsmfpqklITYFTVERLEFACSICAAFLRAHKIARQQLHdfigdsgiASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKrllrnpplvkfpkisdlisahpllrelppsvreplelSTKEIMKLSGVtlyregskpsgiwLISNGVVKWtsksirnkhslhpvfthgsnlglyevligkpymsdmvtDSVVLCFFIESDKILSIlrsdpaveDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLrgeiieipyHCIGFLLEGFikthglqeelitppaalipsqgnlsfrsaetsgveavsFSHQGSCYLVETRARVIIFDIAAFEADKAVVRRTSslfshssdqphkslsrehgnlmswpEHFYKARQQkqnseetdrKANSLSARAMQLSIFGNMVdvqrrsrsfatgtqtmqshslsfpsipshlnrrlvsvrsegattVREKLEvsrstgqipappsqnaganeshvidyssddsgaedelivridspsllsfpqds
MGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKrssggsslitsetGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFktfgdlgddeelgpvdWPTVKRYIRCLNDLEGVpmhphsasetgdsldptNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKfpkisdlisahpllrelppsvreplelstKEIMKLSGVTlyregskpsgiwLISNGVVKWTSKSIRNKHslhpvfthgsnLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEADKAVVRRTSSlfshssdqphkslsREHGNLMSWPEHFYKARQQKQNSEETDRKANSLSARAMQLSIFGNMVDVQRRSRSFATGTQtmqshslsfpsipshlNRRLVSVrsegattvreklevsrstgqipappsqnaganeSHVIDYSSDDSGAEDELivridspsllsfpqds
MGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWsglrgavalslslsvkrssggsslITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEADKAVVRRTSSLFSHSSDQPHKSLSREHGNLMSWPEHFYKARQQKQNSEETDRKANSLSARAMQLSIFGNMVDVQRRSRSFATGTQTMQSHSLSFPSIPSHLNRRLVSVRSEGATTVREKLEVSRSTGQIPAPPSQNAGANESHVIDYSSDDSGAEDELIVRIDSPSLLSFPQDS
**LAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVK*****SSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGV*****************NLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLR**************KEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPS***L********GVEAVSFSHQGSCYLVETRARVIIFDIAAFEADKAVVR***********************************************************IF***********************************************************************************************************
MGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMH**********LDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKS*RNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGN*************VSFSHQGSCYLVETRARVIIFDIA*****************************************************************MQLSIFGNM***************************************************************************************LIVRIDSPS**S*****
MGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLS*********LITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMH**********LDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEADKAVVRRTS***************REHGNLMSWPEHFYK*****************LSARAMQLSIFGNMVDVQRRSRS*************SFPSIPSHLNRRLVSVRSEGATTVR**********************NESHVIDYSSDDSGAEDELIVRIDSPSLLSFPQDS
MGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEAD******************************************************SLSA***************************************SHLNRRLVS************************************************DELIVRIDSPSLLSF****
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEADKAVVRRTSSLFSHSSDQPHKSLSREHGNLMSWPEHFYKARQQKQNSEETDRKANSLSARAMQLSIFGNMVDVQRRSRSFATGTQTMQSHSLSFPSIPSHLNRRLVSVRSEGATTVREKLEVSRSTGQIPAPPSQNAGANESHVIDYSSDDSGAEDELIVRIDSPSLLSFPQDS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query914 2.2.26 [Sep-21-2011]
Q9LKW91146 Sodium/hydrogen exchanger yes no 0.985 0.786 0.632 0.0
Q3YL57756 Sodium/hydrogen exchanger no no 0.552 0.667 0.681 0.0
Q6UJY21175 Sodium/hydrogen exchanger yes no 0.342 0.266 0.252 1e-18
Q01345759 Na(+)/H(+) exchanger beta N/A no 0.239 0.288 0.252 3e-11
Q8BUE1797 Sodium/hydrogen exchanger no no 0.233 0.267 0.256 3e-11
Q4G0N81177 Sodium/hydrogen exchanger yes no 0.331 0.257 0.228 6e-11
P26434717 Sodium/hydrogen exchanger no no 0.233 0.297 0.252 1e-10
P19634815 Sodium/hydrogen exchanger no no 0.228 0.256 0.251 1e-10
P48761822 Sodium/hydrogen exchanger no no 0.228 0.254 0.255 1e-10
Q61165820 Sodium/hydrogen exchanger no no 0.228 0.254 0.255 1e-10
>sp|Q9LKW9|NHX7_ARATH Sodium/hydrogen exchanger 7 OS=Arabidopsis thaliana GN=NHX7 PE=1 SV=1 Back     alignment and function desciption
 Score = 1149 bits (2973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/919 (63%), Positives = 714/919 (77%), Gaps = 18/919 (1%)

Query: 1    MGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAV 60
            +GLAFGIASV+WL FIFNDTVIEI LT+AVSY A++TAQE A  SGVLTVMTLGMFYAA 
Sbjct: 239  IGLAFGIASVIWLKFIFNDTVIEITLTIAVSYFAYYTAQEWAGASGVLTVMTLGMFYAAF 298

Query: 61   ARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILL 120
            ARTAFKG+SQ+SLH+FWEMVAYIANTLIFILSGVVIAEGIL +DKI    GNSW +L LL
Sbjct: 299  ARTAFKGDSQKSLHHFWEMVAYIANTLIFILSGVVIAEGILDSDKI-AYQGNSWRFLFLL 357

Query: 121  YIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSL 180
            Y+++Q+SR+ VVG LYP+L  FGYGL+WKE+IILVWSGLRGAVAL+LSLSVK+SSG S  
Sbjct: 358  YVYIQLSRVVVVGVLYPLLCRFGYGLDWKESIILVWSGLRGAVALALSLSVKQSSGNSH- 416

Query: 181  ITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAF 240
            I+ ETGTLF+FFTGGIVFLTLIVNGSTTQ++L LL MD L A K+RIL+YTKYEMLN A 
Sbjct: 417  ISKETGTLFLFFTGGIVFLTLIVNGSTTQFVLRLLRMDILPAPKKRILEYTKYEMLNKAL 476

Query: 241  KTFGDLGDDEELGPVDWPTVKRYIRCLNDLEG-VPMHPHSASETGDSLDPTNLRDIRIRL 299
            + F DLGDDEELGP DWPTV+ YI  L   EG +  HPH+ S+ G SLDP +L+DIR+R 
Sbjct: 477  RAFQDLGDDEELGPADWPTVESYISSLKGSEGELVHHPHNGSKIG-SLDPKSLKDIRMRF 535

Query: 300  LNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQ 359
            LNGVQA YW MLDEGRI++  ANILMQSVDE +D  S  LCDWRGLK +V+FPNYY FL 
Sbjct: 536  LNGVQATYWEMLDEGRISEVTANILMQSVDEALDQVSTTLCDWRGLKPHVNFPNYYNFLH 595

Query: 360  TSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGE 419
            + + P+KL+TYF VERLE AC I AAFLRAH IARQQL+DF+G+S I S+VI ES+ EGE
Sbjct: 596  SKVVPRKLVTYFAVERLESACYISAAFLRAHTIARQQLYDFLGESNIGSIVINESEKEGE 655

Query: 420  DARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQS 479
            +A+KFLE VR +FPQVL VVKT+QVTYSVLNHL+ YI+NLEKVGLLEEKE+ HLHDAVQ+
Sbjct: 656  EAKKFLEKVRSSFPQVLRVVKTKQVTYSVLNHLLGYIENLEKVGLLEEKEIAHLHDAVQT 715

Query: 480  DLKRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKP 539
             LK+LLRNPP+VK PK+SD+I++HPL   LPP+  EPL+ S KE MKL GVTLY+EGSKP
Sbjct: 716  GLKKLLRNPPIVKLPKLSDMITSHPLSVALPPAFCEPLKHSKKEPMKLRGVTLYKEGSKP 775

Query: 540  SGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 599
            +G+WLI +G+VKW SK + N HSLHP F+HGS LGLYEVL GKPY+ D++TDS+VLCFFI
Sbjct: 776  TGVWLIFDGIVKWKSKILSNNHSLHPTFSHGSTLGLYEVLTGKPYLCDLITDSMVLCFFI 835

Query: 600  ESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA-ERSKMTTCLR 658
            +S+KILS L+SD  ++DFLWQ+SA+ L ++L PQIFE + MQ++RAL++ E SK+TT + 
Sbjct: 836  DSEKILS-LQSDSTIDDFLWQESALVLLKLLRPQIFESVAMQELRALVSTESSKLTTYVT 894

Query: 659  GEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSF-RSAETSGVEAVSFSH 717
            GE IEI  + IG LLEGF+K  G++EELI+ PAAL PS GN SF  S+E SG+  VSFS 
Sbjct: 895  GESIEIDCNSIGLLLEGFVKPVGIKEELISSPAALSPSNGNQSFHNSSEASGIMRVSFSQ 954

Query: 718  QGSCYLVETRARVIIFDIAAFEADKAVVRRTSSLF---SHSSDQPHKSLSREHGNLMSWP 774
            Q + Y+VETRAR IIF+I AF AD+ + RR SSL    S SSDQ  +S  +EH  LMSWP
Sbjct: 955  QATQYIVETRARAIIFNIGAFGADRTLHRRPSSLTPPRSSSSDQLQRSFRKEHRGLMSWP 1014

Query: 775  EHFYKARQQKQNSEETDRKANSLSARAMQLSIFGNMVDVQRRSRSFATGTQTMQSHSLSF 834
            E+ Y  +QQ     E ++   SLS RAMQLSIFG+MV+V RRS SF          +L +
Sbjct: 1015 ENIYAKQQQ-----EINKTTLSLSERAMQLSIFGSMVNVYRRSVSFGGIYNNKLQDNLLY 1069

Query: 835  PSIPSHLNRRLVSVRSEGATTVREKLEVSRSTGQIPAPPSQNAGANESHVIDYSSDDSGA 894
              +P +  + LVS +SE +   +++LE  +   Q+P    +   +   + +  SSD+   
Sbjct: 1070 KKLPLNPAQGLVSAKSESSIVTKKQLETRKHACQLPL---KGESSTRQNTMVESSDEEDE 1126

Query: 895  EDELIVRIDSPSLLSFPQD 913
            ++ ++VRIDSPS + F  D
Sbjct: 1127 DEGIVVRIDSPSKIVFRND 1145
Acts in electroneutral exchange of protons for cations such as Na(+) or Li(+) across plasma membrane. Involved in Na(+) and K(+) homeostasis. Required for cytoplasmic Na(+) and Li(+) detoxification by secreting them from the cytoplasm to the extracellular space. Regulates Na(+) content of the xylem sap.
Arabidopsis thaliana (taxid: 3702)
>sp|Q3YL57|NHX8_ARATH Sodium/hydrogen exchanger 8 OS=Arabidopsis thaliana GN=NHX8 PE=2 SV=1 Back     alignment and function description
>sp|Q6UJY2|SL9C1_MOUSE Sodium/hydrogen exchanger 10 OS=Mus musculus GN=Slc9c1 PE=1 SV=3 Back     alignment and function description
>sp|Q01345|NHEB_ONCMY Na(+)/H(+) exchanger beta OS=Oncorhynchus mykiss PE=2 SV=1 Back     alignment and function description
>sp|Q8BUE1|SL9A4_MOUSE Sodium/hydrogen exchanger 4 OS=Mus musculus GN=Slc9a4 PE=2 SV=1 Back     alignment and function description
>sp|Q4G0N8|SL9C1_HUMAN Sodium/hydrogen exchanger 10 OS=Homo sapiens GN=SLC9C1 PE=2 SV=2 Back     alignment and function description
>sp|P26434|SL9A4_RAT Sodium/hydrogen exchanger 4 OS=Rattus norvegicus GN=Slc9a4 PE=1 SV=1 Back     alignment and function description
>sp|P19634|SL9A1_HUMAN Sodium/hydrogen exchanger 1 OS=Homo sapiens GN=SLC9A1 PE=1 SV=2 Back     alignment and function description
>sp|P48761|SL9A1_CRIGR Sodium/hydrogen exchanger 1 OS=Cricetulus griseus GN=SLC9A1 PE=2 SV=1 Back     alignment and function description
>sp|Q61165|SL9A1_MOUSE Sodium/hydrogen exchanger 1 OS=Mus musculus GN=Slc9a1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query914
261873420 1141 salt overly sensitive 1 [Vitis vinifera] 0.992 0.794 0.745 0.0
225424514 1141 PREDICTED: sodium/hydrogen exchanger 7 [ 0.992 0.794 0.743 0.0
224111392 1129 sodium proton exchanger [Populus trichoc 0.994 0.805 0.735 0.0
99029169 1145 Na+/H+ antiporter [Populus euphratica] 0.993 0.793 0.728 0.0
255561775 1143 sodium/hydrogen exchanger plant, putativ 0.992 0.793 0.723 0.0
449464876 1144 PREDICTED: sodium/hydrogen exchanger 7-l 0.993 0.793 0.718 0.0
384368002 1143 uncharacterized protein LOC100789429 [Gl 0.984 0.787 0.713 0.0
380508732 1144 plasmalemma Na+/H+ antiporter [Cucumis s 0.993 0.793 0.718 0.0
302028367 1153 SOS1 [Bruguiera gymnorhiza] 0.991 0.785 0.707 0.0
269986105 1153 plasma membrane Na+/H+ antiporter [Zygop 0.987 0.783 0.686 0.0
>gi|261873420|gb|ACY03274.1| salt overly sensitive 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1384 bits (3581), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 681/914 (74%), Positives = 781/914 (85%), Gaps = 7/914 (0%)

Query: 1    MGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAV 60
            +GLAFG+ASVLWLGFIFNDTVIEI LTLAVSYIA+FTAQEGADVSGVL VMTLGMFYAAV
Sbjct: 231  IGLAFGLASVLWLGFIFNDTVIEITLTLAVSYIAYFTAQEGADVSGVLAVMTLGMFYAAV 290

Query: 61   ARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILL 120
            A+TAFKG  QQSLH+FWEMVAYIANTLIFILSGVVIAEG+LG++ IF+NHGNSWGYLILL
Sbjct: 291  AKTAFKGGGQQSLHHFWEMVAYIANTLIFILSGVVIAEGVLGSNDIFKNHGNSWGYLILL 350

Query: 121  YIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSL 180
            Y++VQVSR+ VVG  YP L  FGYGL+WKEAIIL+WSGLRGAVALSLSLSVKR+S  SS 
Sbjct: 351  YVYVQVSRIVVVGVSYPFLWYFGYGLDWKEAIILIWSGLRGAVALSLSLSVKRASDSSSY 410

Query: 181  ITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAF 240
            ++SETGTLFVFFTGGIVFLTLIVNGSTTQ+ILHLL+MDKLS  KRRILDYTKYEMLN A 
Sbjct: 411  LSSETGTLFVFFTGGIVFLTLIVNGSTTQFILHLLNMDKLSEVKRRILDYTKYEMLNKAL 470

Query: 241  KTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLL 300
            + FGDLGDDEELGP DWPTVKRYI  LND+EG  +HPH+  E+ ++L PTNL+DIRIRLL
Sbjct: 471  EAFGDLGDDEELGPADWPTVKRYIASLNDVEGGLVHPHTVYESDNNLYPTNLKDIRIRLL 530

Query: 301  NGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNE-LCDWRGLKDNVSFPNYYKFLQ 359
            NGVQAAYW MLDEGRITQT AN+LMQSVDE +DL S+E LCDW+GLK NV+FPNYY+FLQ
Sbjct: 531  NGVQAAYWRMLDEGRITQTTANLLMQSVDEALDLVSDEPLCDWKGLKANVNFPNYYRFLQ 590

Query: 360  TSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGE 419
            TS+ PQKLITYFTVERLE AC ICAAFLRAH+IAR+QL DFIGDS IAS VI ES+ EGE
Sbjct: 591  TSICPQKLITYFTVERLESACYICAAFLRAHRIARRQLLDFIGDSEIASTVINESEAEGE 650

Query: 420  DARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQS 479
            +ARKFLEDVRV FPQVL VVKTRQVT+SVL HLIDY+QNLEK+GLLEEKEM HLHDAVQ+
Sbjct: 651  EARKFLEDVRVTFPQVLRVVKTRQVTHSVLLHLIDYVQNLEKIGLLEEKEMFHLHDAVQT 710

Query: 480  DLKRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKP 539
            DLK+LLRNPPLVK P++ D+I+ HPLL  LP +VREPLE STKEIMK+ GV LYREGSKP
Sbjct: 711  DLKKLLRNPPLVKIPRMCDMITTHPLLGALPSAVREPLESSTKEIMKVRGVALYREGSKP 770

Query: 540  SGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 599
            SGIWLIS+GVVKW SKSIRNKHSL P FTHGS LGLYEVLIGKPY+SDM+TDSVVLCFF+
Sbjct: 771  SGIWLISSGVVKWASKSIRNKHSLRPTFTHGSTLGLYEVLIGKPYISDMITDSVVLCFFV 830

Query: 600  ESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRG 659
            E+DKI+S+LRSDPAVEDFLWQ+SAI L+++LLPQIFEK+ MQD+RAL+AE+S MT  + G
Sbjct: 831  ETDKIMSMLRSDPAVEDFLWQESAIVLAKLLLPQIFEKMAMQDLRALVAEKSIMTIYISG 890

Query: 660  EIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQG 719
            E IEIP++ IGFLL+GFIK    QEELIT PAAL+PS  NLSFRS +TSG +    SHQG
Sbjct: 891  ETIEIPHYSIGFLLDGFIKG---QEELITYPAALMPSH-NLSFRSLDTSGAKVAGSSHQG 946

Query: 720  SCYLVETRARVIIFDIAAFEADKAVVRRTSSLFSHSSDQPHKSLSREHGNLMSWPEHFYK 779
            S Y V+TRARVIIFDI+AFEAD+ + RR+SSL  HS+DQP +SLSREHG+LMSWPEHFYK
Sbjct: 947  SPYQVQTRARVIIFDISAFEADRGLQRRSSSLVPHSADQPSRSLSREHGDLMSWPEHFYK 1006

Query: 780  ARQQKQNSEETDRKANSLSARAMQLSIFGNMVDVQRRSRSFATGTQTMQSHSLSFPSIPS 839
             RQ  Q++E    K+NSLS +AMQLSIFG+MV   +  RSF + ++   SHSLS+P +P+
Sbjct: 1007 LRQDNQSTEGDRWKSNSLSYKAMQLSIFGSMVGTHQHIRSFQS-SRVKPSHSLSYPRVPT 1065

Query: 840  HLNRRLVSVRSEGATTVREKLEVSRSTGQIPAPPSQNAG-ANESHVIDYSSDDSGAEDEL 898
                 LVSVRSEG  T R  +++ + TGQ   PP Q      E+H +D SS++SG EDEL
Sbjct: 1066 THAPPLVSVRSEGPATARRGIDMGKLTGQNLKPPLQGTPHTKETHEVDDSSEESGVEDEL 1125

Query: 899  IVRIDSPSLLSFPQ 912
            +VRIDSPS LSF Q
Sbjct: 1126 LVRIDSPSKLSFHQ 1139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225424514|ref|XP_002285248.1| PREDICTED: sodium/hydrogen exchanger 7 [Vitis vinifera] gi|297737560|emb|CBI26761.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224111392|ref|XP_002315837.1| sodium proton exchanger [Populus trichocarpa] gi|222864877|gb|EEF02008.1| sodium proton exchanger [Populus trichocarpa] Back     alignment and taxonomy information
>gi|99029169|gb|ABF60872.1| Na+/H+ antiporter [Populus euphratica] Back     alignment and taxonomy information
>gi|255561775|ref|XP_002521897.1| sodium/hydrogen exchanger plant, putative [Ricinus communis] gi|223538935|gb|EEF40533.1| sodium/hydrogen exchanger plant, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449464876|ref|XP_004150155.1| PREDICTED: sodium/hydrogen exchanger 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|384368002|ref|NP_001244939.1| uncharacterized protein LOC100789429 [Glycine max] gi|380513814|gb|AFD64746.1| SOS1 [Glycine max] Back     alignment and taxonomy information
>gi|380508732|gb|AFD64618.1| plasmalemma Na+/H+ antiporter [Cucumis sativus] Back     alignment and taxonomy information
>gi|302028367|gb|ADK91080.1| SOS1 [Bruguiera gymnorhiza] Back     alignment and taxonomy information
>gi|269986105|gb|ACZ57357.1| plasma membrane Na+/H+ antiporter [Zygophyllum xanthoxylum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query914
TAIR|locus:20411001146 SOS1 "SALT OVERLY SENSITIVE 1" 0.985 0.786 0.613 3.3e-292
TAIR|locus:2006762756 NHX8 "Na+/H+ exchanger 8" [Ara 0.552 0.667 0.644 9.9e-174
MGI|MGI:26854561175 Slc9c1 "solute carrier family 0.341 0.265 0.242 7.3e-20
UNIPROTKB|F1PLJ21086 SLC9C1 "Uncharacterized protei 0.338 0.284 0.250 1.5e-19
UNIPROTKB|F1M7D91177 Slc9a10 "Protein Slc9a10" [Rat 0.341 0.265 0.242 2.9e-19
UNIPROTKB|F1MQF91137 SLC9A10 "Uncharacterized prote 0.420 0.337 0.218 5.1e-16
UNIPROTKB|F1PLH9723 SLC9C1 "Uncharacterized protei 0.338 0.427 0.250 1e-14
UNIPROTKB|Q4G0N81177 SLC9C1 "Sodium/hydrogen exchan 0.342 0.265 0.211 5.3e-13
RGD|1309075883 Slc9c1 "solute carrier family 0.296 0.306 0.229 3.1e-10
UNIPROTKB|Q5TAH21124 SLC9C2 "Sodium/hydrogen exchan 0.323 0.263 0.193 3.3e-10
TAIR|locus:2041100 SOS1 "SALT OVERLY SENSITIVE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2806 (992.8 bits), Expect = 3.3e-292, P = 3.3e-292
 Identities = 564/919 (61%), Positives = 696/919 (75%)

Query:     1 MGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAV 60
             +GLAFGIASV+WL FIFNDTVIEI LT+AVSY A++TAQE A  SGVLTVMTLGMFYAA 
Sbjct:   239 IGLAFGIASVIWLKFIFNDTVIEITLTIAVSYFAYYTAQEWAGASGVLTVMTLGMFYAAF 298

Query:    61 ARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILL 120
             ARTAFKG+SQ+SLH+FWEMVAYIANTLIFILSGVVIAEGIL +DKI    GNSW +L LL
Sbjct:   299 ARTAFKGDSQKSLHHFWEMVAYIANTLIFILSGVVIAEGILDSDKIAYQ-GNSWRFLFLL 357

Query:   121 YIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWXXXXXXXXXXXXXXXXXXXXXXXX 180
             Y+++Q+SR+ VVG LYP+L  FGYGL+WKE+IILVW                        
Sbjct:   358 YVYIQLSRVVVVGVLYPLLCRFGYGLDWKESIILVWSGLRGAVALALSLSVKQSSGNSH- 416

Query:   181 ITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAF 240
             I+ ETGTLF+FFTGGIVFLTLIVNGSTTQ++L LL MD L A K+RIL+YTKYEMLN A 
Sbjct:   417 ISKETGTLFLFFTGGIVFLTLIVNGSTTQFVLRLLRMDILPAPKKRILEYTKYEMLNKAL 476

Query:   241 KTFGDLGDDEELGPVDWPTVKRYIRCLNDLEG-VPMHPHSASETGDSLDPTNLRDIRIRL 299
             + F DLGDDEELGP DWPTV+ YI  L   EG +  HPH+ S+ G SLDP +L+DIR+R 
Sbjct:   477 RAFQDLGDDEELGPADWPTVESYISSLKGSEGELVHHPHNGSKIG-SLDPKSLKDIRMRF 535

Query:   300 LNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQ 359
             LNGVQA YW MLDEGRI++  ANILMQSVDE +D  S  LCDWRGLK +V+FPNYY FL 
Sbjct:   536 LNGVQATYWEMLDEGRISEVTANILMQSVDEALDQVSTTLCDWRGLKPHVNFPNYYNFLH 595

Query:   360 TSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGE 419
             + + P+KL+TYF VERLE AC I AAFLRAH IARQQL+DF+G+S I S+VI ES+ EGE
Sbjct:   596 SKVVPRKLVTYFAVERLESACYISAAFLRAHTIARQQLYDFLGESNIGSIVINESEKEGE 655

Query:   420 DARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQS 479
             +A+KFLE VR +FPQVL VVKT+QVTYSVLNHL+ YI+NLEKVGLLEEKE+ HLHDAVQ+
Sbjct:   656 EAKKFLEKVRSSFPQVLRVVKTKQVTYSVLNHLLGYIENLEKVGLLEEKEIAHLHDAVQT 715

Query:   480 DLKRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKP 539
              LK+LLRNPP+VK PK+SD+I++HPL   LPP+  EPL+ S KE MKL GVTLY+EGSKP
Sbjct:   716 GLKKLLRNPPIVKLPKLSDMITSHPLSVALPPAFCEPLKHSKKEPMKLRGVTLYKEGSKP 775

Query:   540 SGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 599
             +G+WLI +G+VKW SK + N HSLHP F+HGS LGLYEVL GKPY+ D++TDS+VLCFFI
Sbjct:   776 TGVWLIFDGIVKWKSKILSNNHSLHPTFSHGSTLGLYEVLTGKPYLCDLITDSMVLCFFI 835

Query:   600 ESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA-ERSKMTTCLR 658
             +S+KILS L+SD  ++DFLWQ+SA+ L ++L PQIFE + MQ++RAL++ E SK+TT + 
Sbjct:   836 DSEKILS-LQSDSTIDDFLWQESALVLLKLLRPQIFESVAMQELRALVSTESSKLTTYVT 894

Query:   659 GEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFR-SAETSGVEAVSFSH 717
             GE IEI  + IG LLEGF+K  G++EELI+ PAAL PS GN SF  S+E SG+  VSFS 
Sbjct:   895 GESIEIDCNSIGLLLEGFVKPVGIKEELISSPAALSPSNGNQSFHNSSEASGIMRVSFSQ 954

Query:   718 QGSCYLVETRARVIIFDIAAFEADKAVVRRTSSLF---SHSSDQPHKSLSREHGNLMSWP 774
             Q + Y+VETRAR IIF+I AF AD+ + RR SSL    S SSDQ  +S  +EH  LMSWP
Sbjct:   955 QATQYIVETRARAIIFNIGAFGADRTLHRRPSSLTPPRSSSSDQLQRSFRKEHRGLMSWP 1014

Query:   775 EHFYKARQQKQNSEETDRKANSLSARAMQLSIFGNMVDVQRRSRSFATGTQTMQSHSLSF 834
             E+ Y A+QQ    +E ++   SLS RAMQLSIFG+MV+V RRS SF          +L +
Sbjct:  1015 ENIY-AKQQ----QEINKTTLSLSERAMQLSIFGSMVNVYRRSVSFGGIYNNKLQDNLLY 1069

Query:   835 PSIPSHLNRRLVSVRSEGATTVREKLEVSRSTGQIPAPPSQNAGANESHVIDYSSDDSGA 894
               +P +  + LVS +SE +   +++LE  +   Q+P     +   N   +++ SSD+   
Sbjct:  1070 KKLPLNPAQGLVSAKSESSIVTKKQLETRKHACQLPLKGESSTRQNT--MVE-SSDEEDE 1126

Query:   895 EDELIVRIDSPSLLSFPQD 913
             ++ ++VRIDSPS + F  D
Sbjct:  1127 DEGIVVRIDSPSKIVFRND 1145
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006812 "cation transport" evidence=IEA
GO:0006814 "sodium ion transport" evidence=ISS;RCA;IMP
GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA
GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS
GO:0035725 "sodium ion transmembrane transport" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009651 "response to salt stress" evidence=IEP;IMP
GO:0010163 "high-affinity potassium ion import" evidence=IMP
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0042542 "response to hydrogen peroxide" evidence=IEP;IMP
GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IMP
GO:0000302 "response to reactive oxygen species" evidence=IEP
GO:0006979 "response to oxidative stress" evidence=IMP
GO:0006816 "calcium ion transport" evidence=RCA
GO:0006869 "lipid transport" evidence=RCA
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA
GO:0010351 "lithium ion transport" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
TAIR|locus:2006762 NHX8 "Na+/H+ exchanger 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2685456 Slc9c1 "solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PLJ2 SLC9C1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1M7D9 Slc9a10 "Protein Slc9a10" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MQF9 SLC9A10 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PLH9 SLC9C1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q4G0N8 SLC9C1 "Sodium/hydrogen exchanger 10" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1309075 Slc9c1 "solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5TAH2 SLC9C2 "Sodium/hydrogen exchanger 11" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LKW9NHX7_ARATHNo assigned EC number0.63220.98570.7862yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query914
COG0025429 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport 7e-22
TIGR00840559 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3 2e-16
pfam00999370 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang 5e-16
TIGR00831525 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial fo 8e-10
pfam0002791 pfam00027, cNMP_binding, Cyclic nucleotide-binding 1e-06
COG0664214 COG0664, Crp, cAMP-binding proteins - catabolite g 2e-04
cd00038115 cd00038, CAP_ED, effector domain of the CAP family 0.002
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information 
 Score = 99.3 bits (248), Expect = 7e-22
 Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 21/235 (8%)

Query: 1   MGLAFGIASVLWLGFI----FNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMF 56
           +GL  G      L  +    +   ++E  LTL +++ A+  A+    VSG+L V+  G+ 
Sbjct: 200 LGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYLLAEAL-GVSGILAVVVAGLV 258

Query: 57  YAAVARTAFKGES-QQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWG 115
                R      S +  L  FWE++ ++ N L+F+L G  +   +L              
Sbjct: 259 LGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLL--------LALGLL 310

Query: 116 YLILLYIFVQVSRLF-VVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRS 174
            L++  + V ++R   V  +L          L W+E + L W+G RG V+L+L+L +   
Sbjct: 311 GLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWAGPRGVVSLALALLIP-- 368

Query: 175 SGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILD 229
                 +      L +F    ++  +L+V G T   +   L++ + SA  + IL 
Sbjct: 369 ----LELPGPARELILFIVFLVILFSLLVQGLTLPPLAKKLEVSEESALAKEILG 419

Length = 429
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3 Back     alignment and domain information
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family Back     alignment and domain information
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form Back     alignment and domain information
>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain Back     alignment and domain information
>gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 914
TIGR00831525 a_cpa1 Na+/H+ antiporter, bacterial form. This mod 100.0
TIGR00840559 b_cpa1 sodium/hydrogen exchanger 3. This model is 99.97
KOG1966670 consensus Sodium/hydrogen exchanger protein [Inorg 99.96
KOG1965575 consensus Sodium/hydrogen exchanger protein [Inorg 99.95
COG0025429 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg 99.93
KOG0498727 consensus K+-channel ERG and related proteins, con 99.81
COG3263574 NhaP-type Na+/H+ and K+/H+ antiporters with a uniq 99.79
TIGR00844810 c_cpa1 na(+)/h(+) antiporter. This model is specif 99.79
PRK05326562 potassium/proton antiporter; Reviewed 99.78
PRK09392236 ftrB transcriptional activator FtrB; Provisional 99.73
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.73
PLN03192823 Voltage-dependent potassium channel; Provisional 99.72
KOG0500536 consensus Cyclic nucleotide-gated cation channel C 99.67
KOG0499815 consensus Cyclic nucleotide-gated cation channel C 99.65
KOG1113368 consensus cAMP-dependent protein kinase types I an 99.65
PRK11753211 DNA-binding transcriptional dual regulator Crp; Pr 99.63
COG2905 610 Predicted signal-transduction protein containing c 99.59
PRK10402226 DNA-binding transcriptional activator YeiL; Provis 99.57
PRK11161235 fumarate/nitrate reduction transcriptional regulat 99.56
cd00038115 CAP_ED effector domain of the CAP family of transc 99.54
TIGR03697193 NtcA_cyano global nitrogen regulator NtcA, cyanoba 99.52
COG0664214 Crp cAMP-binding proteins - catabolite gene activa 99.48
PF0002791 cNMP_binding: Cyclic nucleotide-binding domain; In 99.46
PRK09391230 fixK transcriptional regulator FixK; Provisional 99.44
PRK13918202 CRP/FNR family transcriptional regulator; Provisio 99.44
smart00100120 cNMP Cyclic nucleotide-monophosphate binding domai 99.4
KOG0614732 consensus cGMP-dependent protein kinase [Signal tr 99.34
PLN02868413 acyl-CoA thioesterase family protein 99.28
PF00999380 Na_H_Exchanger: Sodium/hydrogen exchanger family; 99.24
KOG4505467 consensus Na+/H+ antiporter [Inorganic ion transpo 98.9
KOG1113368 consensus cAMP-dependent protein kinase types I an 98.88
KOG0501971 consensus K+-channel KCNQ [Inorganic ion transport 98.82
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 98.46
PRK03659601 glutathione-regulated potassium-efflux system prot 97.88
PRK03562621 glutathione-regulated potassium-efflux system prot 97.66
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 97.34
PRK11832207 putative DNA-binding transcriptional regulator; Pr 97.19
PLN03159832 cation/H(+) antiporter 15; Provisional 97.16
PRK10669558 putative cation:proton antiport protein; Provision 96.91
PF04831153 Popeye: Popeye protein conserved region; InterPro: 96.77
COG0475397 KefB Kef-type K+ transport systems, membrane compo 96.26
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 96.21
TIGR00932273 2a37 transporter, monovalent cation:proton antipor 95.61
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 88.89
TIGR00844810 c_cpa1 na(+)/h(+) antiporter. This model is specif 85.03
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form Back     alignment and domain information 
Probab=100.00  E-value=2.5e-37  Score=364.37  Aligned_cols=321  Identities=20%  Similarity=0.270  Sum_probs=240.9

Q ss_pred             ChhhHHHHHHHHHhHhcchhHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccc-cCChhhHHHHHHHHHHH
Q 002506            2 GLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVART-AFKGESQQSLHYFWEMV   80 (914)
Q Consensus         2 Gi~~G~~~~~~l~~~~~d~~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~-~~s~~~~~~~~~fw~~l   80 (914)
                      |+++|++...++++..+|+..+++++++++|++|++| |.+|+||++|+|+||++++++++. +++++.+...++||+.+
T Consensus       189 G~~~g~~~~~l~~~~~~~~~~~~~l~l~~~~~~y~lA-e~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l  267 (525)
T TIGR00831       189 GLAVGYLAYRLLRAKIDDPLVEIALTILAPFAGFLLA-ERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVI  267 (525)
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHH
Confidence            5555555554555667888999999999999999999 679999999999999999998876 78999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhccccccc--ccccchH---HHHHHHHHHHHHHHHHHHHHH--HHHHhhhCCCCChhhhHH
Q 002506           81 AYIANTLIFILSGVVIAEGILGNDKIF--QNHGNSW---GYLILLYIFVQVSRLFVVGTL--YPVLRNFGYGLEWKEAII  153 (914)
Q Consensus        81 ~~~an~lIFillGl~i~~~v~~~~~~~--~~~~~~~---~~~l~~~~~i~v~R~~~v~~~--~p~l~~~~~~~~~~~~~v  153 (914)
                      ++++|+++|+++|+.++..+.+.....  ......|   ..+++++..+.++|+++++..  .+..++.+.+++|+++++
T Consensus       268 ~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v  347 (525)
T TIGR00831       268 VFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHV  347 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHH
Confidence            999999999999999986332210000  0000111   124455666777888776532  122233345678999999


Q ss_pred             HhhhcchhHHHHHHHhhhhcccC-CCCcccccccceehhhhhhhhhhhhhhhhccHHHHHhhhcccCCcHHHHHHHHHHH
Q 002506          154 LVWSGLRGAVALSLSLSVKRSSG-GSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTK  232 (914)
Q Consensus       154 l~w~GlRGavsLaLal~v~~~~~-~~~~~~~~~~~~i~~~t~gvVllTlli~G~tl~~llr~L~l~~~~~~~~~~~~~~~  232 (914)
                      ++|+|+||+|++|+|+++|.... +.+++   .|+.+++++++||++|+++||+|+|+++|++++++.++. +.....++
T Consensus       348 ~~w~G~RG~vslA~al~~p~~~~~g~~~p---~r~~i~~~~~~vVl~TllvqG~tlp~l~r~l~~~~~~~~-~~e~~~a~  423 (525)
T TIGR00831       348 VSWAGLRGAIPLALALSFPNQLLSGMAFP---ARYELVFLAAGVILFSLLVQGISLPIFVKRKFVSEHSER-ELEEIIAR  423 (525)
T ss_pred             heeccchHHHHHHHHHHccccccCCCCCc---hHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCCCCChh-hHHHHHHH
Confidence            99999999999999999997643 44554   479999999999999999999999999999999887654 44566788


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCHHH-HHHHHHHHhhhcCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 002506          233 YEMLNTAFKTFGDLGDDEELGPVDWPT-VKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAML  311 (914)
Q Consensus       233 ~~~~~~a~~~l~~l~~d~~l~~a~w~~-v~~y~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~r~r~l~~~r~~~~~l~  311 (914)
                      ..+.+++++.++++.++....++..+. .++|..++++.+.+... ..  + +...+.+...++|++++++||+.+.+++
T Consensus       424 ~~~~~aa~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~--~-~~~~~~~~~~~~~~~~l~~er~~l~~~~  499 (525)
T TIGR00831       424 YIAARSAKFALMKAVEQLRIVEPVARELLPELDARIEELRADGEE-KI--R-SGMGEKNLRRRARLYVLDAKRSAVVDLR  499 (525)
T ss_pred             HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhccc-ch--h-hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999887665544433333 36677766654332111 00  0 0001112245789999999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHH
Q 002506          312 DEGRITQTAANILMQSVDEG  331 (914)
Q Consensus       312 ~~g~is~~~~~~L~~~id~~  331 (914)
                      ++|+||+++++.+++.+|..
T Consensus       500 ~~~~i~~~~~~~~~~~ld~~  519 (525)
T TIGR00831       500 AGGLISQEVLLELMRELDLK  519 (525)
T ss_pred             HcCCCCHHHHHHHHHHhhHH
Confidence            99999999999999988753

This model is specific for the bacterial members of this family.
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3 Back     alignment and domain information
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>PRK09392 ftrB transcriptional activator FtrB; Provisional Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional Back     alignment and domain information
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] Back     alignment and domain information
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional Back     alignment and domain information
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional Back     alignment and domain information
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial Back     alignment and domain information
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] Back     alignment and domain information
>PRK09391 fixK transcriptional regulator FixK; Provisional Back     alignment and domain information
>PRK13918 CRP/FNR family transcriptional regulator; Provisional Back     alignment and domain information
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PLN02868 acyl-CoA thioesterase family protein Back     alignment and domain information
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] Back     alignment and domain information
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>PRK11832 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query914
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
2pqq_A149 Putative transcriptional regulator; APC7345, strep 2e-07
3d0s_A227 Transcriptional regulatory protein; CAMP receptor 4e-07
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 1e-06
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 1e-06
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 1e-05
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 1e-04
4ev0_A216 Transcription regulator, CRP family; CAMP binding, 1e-05
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 4e-05
3e97_A231 Transcriptional regulator, CRP/FNR family; YP_6044 4e-05
3fx3_A237 Cyclic nucleotide-binding protein; helix_TURN_heli 4e-05
3dv8_A220 Transcriptional regulator, CRP/FNR family; cyclic 8e-05
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 1e-04
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 2e-04
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 2e-04
3dkw_A227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 3e-04
2gau_A232 Transcriptional regulator, CRP/FNR family; structu 6e-04
1o5l_A213 Transcriptional regulator, CRP family; TM1171, str 6e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 68.3 bits (166), Expect = 9e-12
 Identities = 94/651 (14%), Positives = 188/651 (28%), Gaps = 187/651 (28%)

Query: 66  KGESQQSLHYFWEMVAYIANTL-IFILSGVVIAEGILGNDKIF-----QNHGNSWGYLIL 119
           K     +L  FW +++     +  F+       E +L  +  F     +        +  
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFV-------EEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 120 LYIFVQVSRLFVVGTLYP-----------VLRNFGYGLEWKEAIILVWSGLRGAVALSLS 168
           +YI  Q  RL+    ++             LR     L   + +++   G+ G+    ++
Sbjct: 111 MYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID--GVLGSGKTWVA 167

Query: 169 LSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRIL 228
           L V  S             +       I +L L    S    +  L  +           
Sbjct: 168 LDVCLSYK-----------VQCKMDFKIFWLNLKNCNSPETVLEMLQKL----------- 205

Query: 229 DYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKR-------YIRCLNDLEGVPMHPHSAS 281
                  ++  + +  D   + +L         R       Y  CL  L  V       +
Sbjct: 206 ----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-----QNA 256

Query: 282 ETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCD 341
           +  ++ +      +  ++L  +             T+        S      ++ +    
Sbjct: 257 KAWNAFN------LSCKIL--L------------TTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 342 WRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLE------FACSICAAFLRAHKIARQ 395
              L  +       K+L     PQ L         E         SI A  +R       
Sbjct: 297 --TLTPDEVKSLLLKYLDCR--PQDL-------PREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 396 QLHDFIGDSGIASVVIEES--KVEGEDARK-------FLEDVRVNFP-QVLHVV---KTR 442
                  D    + +IE S   +E  + RK       F     +  P  +L ++     +
Sbjct: 346 NWKHVNCDK--LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--PTILLSLIWFDVIK 401

Query: 443 QVTYSVLNHLIDYIQNLEKVGLLEE--KEM-LHLHDAVQSDLKRLLRNPPLVKFPKISDL 499
                V+N L  Y        L+E+  KE  + +   +  +LK            K+ + 
Sbjct: 402 SDVMVVVNKLHKY-------SLVEKQPKESTISIPS-IYLELKV-----------KLENE 442

Query: 500 ISAHPLLRELPPSVREPLELSTKEIMK--------------LSGVTLYREGSKPSGIWLI 545
            + H  + +       P    + +++               L  +      +    ++L 
Sbjct: 443 YALHRSIVD---HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL- 498

Query: 546 SNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKIL 605
            +   ++  + IR  H        GS L   + L  K Y            +  ++D   
Sbjct: 499 -D--FRFLEQKIR--HDSTAWNASGSILNTLQQL--KFYKP----------YICDNDPKY 541

Query: 606 SILRSDPAVEDFLWQQSAIAL----SRILLPQIFEKLTMQDMRALIAERSK 652
             L +   + DFL +     +    + +L  +I   L M +  A+  E  K
Sbjct: 542 ERLVNA--ILDFLPKIEENLICSKYTDLL--RI--AL-MAEDEAIFEEAHK 585
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 Back     alignment and structure
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 Back     alignment and structure
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 914
d1vp6a_133 b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo 6e-07
d1o7fa2155 b.82.3.2 (A:13-167) Regulatory domain of Epac2, do 4e-06
d1ne6a1136 b.82.3.2 (A:109-244) Regulatory subunit of Protein 2e-05
d1ne6a2132 b.82.3.2 (A:245-376) Regulatory subunit of Protein 8e-05
d1cx4a2147 b.82.3.2 (A:266-412) Regulatory subunit of Protein 0.002
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

 Score = 47.4 bits (112), Expect = 6e-07
 Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 7/131 (5%)

Query: 493 FPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKW 552
           F +   L++A PL ++L P+V   +  + +     +G  + R G     ++ +  G V  
Sbjct: 6   FVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSV 65

Query: 553 TSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDP 612
                            G+  G   ++ G+P  + +   + V    + S     +  S P
Sbjct: 66  A-------TPNPVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSP 118

Query: 613 AVEDFLWQQSA 623
            + +   + + 
Sbjct: 119 EIAEIFRKTAL 129
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query914
d1q3ea_193 HCN pacemaker channel {Mouse (Mus musculus) [TaxId 99.91
d1cx4a2147 Regulatory subunit of Protein kinase A {Rat (Rattu 99.86
d1cx4a1136 Regulatory subunit of Protein kinase A {Rat (Rattu 99.83
d1ne6a2132 Regulatory subunit of Protein kinase A {Cow (Bos t 99.82
d1zyba2147 Probable transcription regulator BT4300, N-termina 99.81
d1ne6a1136 Regulatory subunit of Protein kinase A {Cow (Bos t 99.81
d1vp6a_133 Putative ion channel CnbD {Mesorhizobium loti [Tax 99.8
d2gaua2142 Transcriptional regulator PG0396, N-terminal domai 99.78
d2oz6a2134 Cyclic AMP receptor-like protein Vfr {Pseudomonas 99.76
d1o7fa2155 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.76
d1i5za2132 Catabolite gene activator protein, N-terminal doma 99.76
d3e5ua2139 Chlorophenol reduction protein CprK {Desulfitobact 99.75
d1ft9a2132 CO-sensing protein CooA, N-terminal domain {Rhodos 99.72
d1o7fa3124 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.72
d1o5la1129 CRP-like transcriptional regulator TM1171, N-termi 99.72
d1wgpa_137 Probable cyclic nucleotide-gated ion channel 6 {Th 99.71
d2zcwa2112 Transcriptional regulator TTHA1359, N-terminal dom 99.56
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=7e-23  Score=160.90  Aligned_cols=187  Identities=17%  Similarity=0.245  Sum_probs=161.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCC
Q ss_conf             999984256899999721289999999999999999256505877-6534889999987313999888779466885089
Q 002506          426 EDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEM-LHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHP  504 (914)
Q Consensus       426 ~~l~~~fPei~~~iktk~a~~~lL~~~~~~i~~l~~~Gllde~E~-~~L~~~I~~~lk~L~~~p~~~~~~~~~~lL~~~p  504 (914)
                      ..++..+-.+.++|+.++++..+..+.++|++..++....++.+. ..+...+..++....          ..++++++|
T Consensus         5 ~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~i~~~lp~~l~~~i~~~~----------~~~~l~~~~   74 (193)
T d1q3ea_           5 RQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEIVNFN----------CRKLVASMP   74 (193)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHH----------THHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHH----------HHHHHHCCH
T ss_conf             9999999999999998499999999999999998650366599999879922348999999----------999982024


Q ss_pred             CCCCCCCCCHHHHHCCCEEEEECCCCEEECCCCCCCEEEEEECCEEEEEEECCCCCEEEEEEECCCCCCCHHHHHCCCCC
Q ss_conf             89999930078875047799965896564378877858999520799999618981899767079991413464249983
Q 002506          505 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY  584 (914)
Q Consensus       505 lF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iyiI~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~alL~~~~r  584 (914)
                      +|+++++..+..++..++...+.+|++|+++|+.++.+|||.+|.|++...+  +..   ..+++|++|||.+++.+.++
T Consensus        75 ~F~~~~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~--~~~---~~l~~G~~fGe~~~~~~~~~  149 (193)
T d1q3ea_          75 LFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKG--NKE---MKLSDGSYFGEICLLTRGRR  149 (193)
T ss_dssp             HHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-C--CCE---EEECTTCEECHHHHHHCSBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEEEEEEEEECCC--CCE---EEECCCEEEEEEECCCCCCC
T ss_conf             7776129999999999788762268431035887750057512057762178--621---46506536554202477742


Q ss_pred             EEEEEECCEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf             0289986348999880999999994297999999999999999
Q 002506          585 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALS  627 (914)
Q Consensus       585 ~atv~A~t~~~ll~I~~~~f~~ll~~~p~l~~~l~~~~~~~l~  627 (914)
                      .++++|.++|.++.|++++|..++..+|.+...+...+..++.
T Consensus       150 ~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~RL~  192 (193)
T d1q3ea_         150 TASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLD  192 (193)
T ss_dssp             SSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHT
T ss_pred             CCCCEECCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCC
T ss_conf             1242245746999976999999998799999999999999808
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Back     information, alignment and structure
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure