Citrus Sinensis ID: 002540

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-

MVEQKRKAAESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFEDENVLSDDEDDNNDIENNCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSSSDDSSDEDDVDENSAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQEYESSLKKLEGTGGEENLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGTNNDVQKNVKTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKQMKSGNDVDANNEKSMKVVEPALNDQGLEETAREVDEESETDSEGQMVDGILSSAPKASYKLPSQEELIRLAFAGDDVEEDFEEDKEKVLNEENPVPEKPNLIPGWGQWTDVQRKKGVPSWMLDEHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQSIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKFEEVNPHEKTEDHKGSGKKHKNSRNKGNSGKRTGTRPVVVKS

cHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHccccccccccccccHHHHccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHccccccccHHHHHHHHHHHHcccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccEEEccccHHHHHHHcccccccccccHHHHHHHHccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

cHHHHHHHHHcccccccccccccccHHcccccccccHcHccccccccHHHHHHHHHccccccccccccccccccccEEEEcccccHHHcccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHccccccccccccccccccHccccccccccccccEEHHHHHcccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEcccccccccccHHHHHcccccccHHHHHHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccccccccccccccEEEcccccHcccccccHHcHccccccccccccHcccHHHHHHccccccHHHHcccccccccccccccccHHHccccHHccccccccccHHcccccHHHHHccHHHcccHHHHHHHHccccccccccHccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccEcccccccccccccccccccccHHHHccccEEEEccccHHHcHHcccccEEEEccHcHHHHHHHHcccccccccHHHHHHHccccccccccHHHHHHHHccccEEEcccEEEccccccccccccccccccccccccccccccccccccccccEEEEEc

MVEQKRkaaesadstkhkmkhskkpkrqskkldgggekkkrkgprlpnslRKEIDRlntnslngsdedigsdeardfyeyeeplpqeesrknrrfdpvenyeyelpekfedenvlsddeddnndienncgrrgiskqvgdefqdgdndERHLRMLqgvtgmpseffegkkkkkNVVIseaypesefnptrdvldgngqisiddlleplqgksgySKLRKRMHQMRKkstsvlaplpkpeqeklERKVVYEQSKkditkweplvkmnreapsiyfdedtnlgfstvgaiaagfeprTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKsmkdssssddssdeddvdensagsdqdRASKLYATAKEKTLKVlaeddevpesgvlslPFMVRGMKKRKEEAIQEANAALQEYESSLKKLegtggeenlkegaasgrrvfgpvkrevlvpskkietdnyygnsdsegdleaeanmdagngtnndvqknvktdsftlhvdheshpdsvfksfedvvrdpgpktsydvaIFASGTwkkqmksgndvdannekSMKVVEpalndqgleetarevdeesetdsegqmvdgilssapkasyklpsQEELIRLAFAGDDVEEDFEEDKEKvlneenpvpekpnlipgwgqwtdvqrkkgvpswmldeHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLhtktlpypftskevfeqsirvpvgpefnpatavgaltrpdvkkksgiiikpikfeevnphektedhkgsgkkhknsrnkgnsgkrtgtrpvvvks

mveqkrkaaesadstkhkmkhskkpkrqskkldgggekkkrkgprlpnslrkeidrlntnslngsdedigsdeaRDFYEyeeplpqeesrknrrfdpvENYEyelpekfedenvlsddeddnndienncgrrgiskqvgdefqdgdnDERHLRMLQGvtgmpseffegkkkKKNVVISEaypesefnptrdvlDGNGQISiddlleplqgksGYSKLRKRMHQMrkkstsvlaplpkpeqeklerkvvyeqskkditkweplvkmNREAPSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKeahkqdgskllelnkISVEDYLEERNHVAKMrsllfrhemkrkrikkiksktyhrllkkdrlkaasVEMLMDPEAAKEEARKQEFkraeermtlkhknssrwaKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSmkdssssddssdeddvdensagsdqdrasKLYATAKEKTlkvlaeddevpesgvlslpfmVRGMKKRKEEAIQEANAALQEYESSLKKLEGTGGEENLkegaasgrrvfgpvkrevlvpskkietdnyygnsDSEGDLEAEANMDAGNGTNNDVQKNVKTDSFTLHVDheshpdsvfksfEDVVRDPGPKTSYDVAIFASGTWKKQMKSGNDVDANNEKSMKvvepalndqgleetarevdeesetdsegqmvDGILSSAPKASYKLPSQEELIRLAFAGDDVEEDFEEDKEkvlneenpvpekpnlipgwgqwtdvQRKKGVPSWMLDEHENAKKMREEALKkrkdahlkhviisekldkkaeklhtktlpypftskEVFEQSIRVPVGPEFNPATavgaltrpdvkkksgiiikpikfeevnphektedhkgsgkkhknsrnkgnsgkrtgtrpvvvks

MVEQKRKAAESADSTkhkmkhskkpkrqskkldgggekkkrkgPRLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFedenvlsddeddnndiennCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMkrkrikkikskTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKdssssddssdeddvdensAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQEYESSLKKLEGTGGEENLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGTNNDVQKNVKTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKQMKSGNDVDANNEKSMKVVEPALNDQGLEETAREVDEESETDSEGQMVDGILSSAPKASYKLPSQEELIRLAFAGddveedfeedkekvLNEENPVPEKPNLIPGWGQWTDVQRKKGVPSWMLDEHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQSIRVPVGPEFNPATAVGALTRPDVkkksgiiikpikFEEVNPHEKTEDHKGSGKKHKNSRNKGNSGKRTGTRPVVVKS

***************************************************************************************************************************************************************************************************************************************************************ITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFE*******************************LNKISVEDYLEERNHVAKMRSLLFRHE*****I**I***TYHRL*********************************************************************************************************************************************************************************************************************************************************************************SYDVAIFASGTW************************************************************************L******************************LIPGWGQWTDVQRK******************************KHVIIS*********LHTKTLPYPFTSKEVFEQSIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKF*****************************************

*************************************************************************************************************************************************************************************************************************************************************KDITKWE**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************AFAGDDVEED***********************GWGQWT*************************************VIISEKLDKKAEKLHTKTLPYPFTSKEVFEQSIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPI*******************************************

********************************************RLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFEDENVLSDDEDDNNDIENNCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYS**************SVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPE************RAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTR******************************RASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQEYESSLKKLEGTGGEENLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGTNNDVQKNVKTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKQMKSGNDVDANNEKSMKVVEPALNDQ********************MVDGILSSAPKASYKLPSQEELIRLAFAGDDV***********LNEENPVPEKPNLIPGWGQWTDVQRKKGVPSWMLDEHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQSIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKFEEVN*************************************

********************************************RLPNSLRKEIDRLN**************EARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEK*************************************************VTGMP***********************************QISIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLT**************************************************************************************YE*S**********************************************************************************************************************************************************************************SYKLPSQEELIRLAFAGDDVEEDFEEDKEKVLNEENPVPEKPNLIPGWGQWTDVQRKKGVPSWMLDEHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQSIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKFE****************************************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo

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MVEQKRKAAESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFEDENVLSDDEDDNNDIENNCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSSSDDSSDEDDVDENSAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGEENLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGTNNDVQKNVKTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKQMKSGNDVDANNEKSMKVVEPALNDQGLEETAREVDEESETDSEGQMVDGILSSAPKASYKLPSQEELIRLAFAGDDVEEDFEEDKEKVLNEENPVPEKPNLIPGWGQWTDVQRKKGVPSWMLDEHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQSIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKFEEVNPHEKTEDHKGSGKKHKNSRNKGNSGKRTGTRPVVVKS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		911	2.2.26 [Sep-21-2011]
P87137		929	Uncharacterized protein C	yes	no	0.350	0.343	0.341	6e-34
Q3T0Q8		770	U3 small nucleolar RNA-as	yes	no	0.323	0.383	0.317	2e-26
Q6EJB6		756	U3 small nucleolar RNA-as	yes	no	0.371	0.447	0.286	3e-20
Q5TAP6		766	U3 small nucleolar RNA-as	yes	no	0.154	0.184	0.418	8e-20
Q04500		899	U3 small nucleolar RNA-as	yes	no	0.159	0.161	0.333	8e-19
Q640M1		767	U3 small nucleolar RNA-as	no	no	0.156	0.186	0.387	1e-18
Q9BVJ6		771	U3 small nucleolar RNA-as	no	no	0.169	0.199	0.377	4e-18

>sp\|P87137\|YDM6_SCHPO Uncharacterized protein C57A7.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC57A7.06 PE=1 SV=1	Back alignment and function desciption

 Score =  147 bits (370), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 121/354 (34%), Positives = 191/354 (53%), Gaps = 35/354 (9%)

Query: 233 APLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFD-EDTNLGFSTVGAIAAG 291
           APL K  Q++LER+  YEQ+K D+ KW+P+V  NR++  + F   +T     +   +A+ 
Sbjct: 325 APLAKSIQDRLERQAAYEQTKNDLEKWKPIVADNRKSDQLIFPMNETARPVPSNNGLASS 384

Query: 292 FEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHE 351
           FEPRTE E+KM   + D  ++        + L LNK+SVE+  E    +  MR L+FR E
Sbjct: 385 FEPRTESERKMHQALLDAGLENESALKKQEELALNKLSVEEVAERTRQLRFMRELMFREE 444

Query: 352 MKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKE---EARKQEFKRAEERMTLKH 408
            K KR+ KIKSKTY ++ K  + K    EM + P++ ++   E  K E  RA ERMT +H
Sbjct: 445 RKAKRVAKIKSKTYRKIRKNRKEK----EMALIPKSEEDLENERIKSEEARALERMTQRH 500

Query: 409 KNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSSSDDSSDEDDVDE 468
           KN+S W +++L+R   +  EGTR A+ EQ+++   L +++   + S       D +DV E
Sbjct: 501 KNTSSWTRKMLERA--SHGEGTREAVNEQIRKGDELMQRIHGKEIS-----EMDGEDVSE 553

Query: 469 NSAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAA 528
            S  SD D   ++ +TA EK    +  ++E    GVL + FM R    R++  +Q+    
Sbjct: 554 FS-DSDYDTNEQV-STAFEK----IRNEEEPKLKGVLGMKFM-RDASNRQKALVQD---E 603

Query: 529 LQEYESSLKKL--------EGTGGEENLKEGAASGRRVFGPVKR--EVLVPSKK 572
           +Q +E  L  +        +G  G   +  G  +GRR F P +   ++ +PS+K
Sbjct: 604 MQAFEDELAGVPNEDDTSQKGEDGVPGVLIGNNTGRRSFKPSEEAAKLSLPSRK 657

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp\|Q3T0Q8\|UT14A_BOVIN U3 small nucleolar RNA-associated protein 14 homolog A OS=Bos taurus GN=UTP14A PE=2 SV=1	Back alignment and function description

>sp\|Q6EJB6\|UT14B_MOUSE U3 small nucleolar RNA-associated protein 14 homolog B OS=Mus musculus GN=Utp14b PE=1 SV=2	Back alignment and function description

>sp\|Q5TAP6\|UT14C_HUMAN U3 small nucleolar RNA-associated protein 14 homolog C OS=Homo sapiens GN=UTP14C PE=2 SV=1	Back alignment and function description

>sp\|Q04500\|UTP14_YEAST U3 small nucleolar RNA-associated protein 14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP14 PE=1 SV=1	Back alignment and function description

>sp\|Q640M1\|UT14A_MOUSE U3 small nucleolar RNA-associated protein 14 homolog A OS=Mus musculus GN=Utp14a PE=2 SV=1	Back alignment and function description

>sp\|Q9BVJ6\|UT14A_HUMAN U3 small nucleolar RNA-associated protein 14 homolog A OS=Homo sapiens GN=UTP14A PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		911
225437402		895	PREDICTED: uncharacterized protein C57A7	0.962	0.979	0.669	0.0
255564196		900	U3 small nucleolar RNA-associated protei	0.973	0.985	0.636	0.0
147791054		1529	hypothetical protein VITISV_003625 [Viti	0.821	0.489	0.631	0.0
356503904		887	PREDICTED: U3 small nucleolar RNA-associ	0.956	0.981	0.589	0.0
356570968		883	PREDICTED: U3 small nucleolar RNA-associ	0.954	0.985	0.593	0.0
449436485		904	PREDICTED: U3 small nucleolar RNA-associ	0.973	0.981	0.587	0.0
357511257		890	U3 small nucleolar RNA-associated protei	0.956	0.978	0.552	0.0
145339926		855	U3 ribonucleoprotein-like protein [Arabi	0.904	0.963	0.559	0.0
110740279		855	hypothetical protein [Arabidopsis thalia	0.904	0.963	0.558	0.0
3193300		870	T14P8.20 [Arabidopsis thaliana] gi\|72690	0.904	0.947	0.549	0.0

>gi\|225437402\|ref\|XP_002268231.1\| PREDICTED: uncharacterized protein C57A7.06 [Vitis vinifera] gi\|297743903\|emb\|CBI36873.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1120 bits (2896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/908 (66%), Positives = 721/908 (79%), Gaps = 31/908 (3%)

Query: 1   MVEQKRKAAE-SADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNT 59
           M E+KRK+ E S      K + + KPK            KKR GPRLP+ LRKE+D +N 
Sbjct: 1   MAEKKRKSKEESGGGRLQKKRKNSKPKTL----------KKRTGPRLPSKLRKELDLVNP 50

Query: 60  NSL-NGSDEDIGSDE----ARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFEDENV 114
           N L  G DE+I SDE    A + YEYEE   +EES+KNRRFD VEN+EYELPE F+DEN+
Sbjct: 51  NPLKGGGDEEINSDEGELLANNLYEYEEAAAEEESKKNRRFDSVENFEYELPEDFKDENI 110

Query: 115 LSDDEDDNNDIENNCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKN 174
            SDD+D   + E N  R   S  +GDE ++ D D RH+RMLQG+TGMPSE FEGKK+K N
Sbjct: 111 ASDDDDIEGEDEEN-NRSENSSHLGDEVEEED-DGRHMRMLQGITGMPSEAFEGKKRKNN 168

Query: 175 VVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAP 234
           VV+SEAYPESE+NP+RDVL+GNG+ISI DLL+PL GKSGYSKLRKRMHQ+ +KS SV AP
Sbjct: 169 VVVSEAYPESEYNPSRDVLEGNGRISIQDLLDPLHGKSGYSKLRKRMHQVERKSMSVHAP 228

Query: 235 LPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFEP 294
           LPK ++EKLERKV YEQSKKDITKWEPLVK NREAP++YFDED +LGFSTVGAIA+ FEP
Sbjct: 229 LPKADREKLERKVAYEQSKKDITKWEPLVKKNREAPTVYFDEDVDLGFSTVGAIASEFEP 288

Query: 295 RTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKR 354
           RT+FEKK+ASLV+DDKV EAH+QDGS+LLELNKISVED  E  N +AKMRSLLF HEMK 
Sbjct: 289 RTDFEKKIASLVHDDKVLEAHRQDGSRLLELNKISVEDVKERHNRIAKMRSLLFNHEMKA 348

Query: 355 KRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRW 414
           KRIKKIKSKTYHRLLKKDRLK AS E+ MDPEAAKE A KQEFKRAEER+TLKHKNSS+W
Sbjct: 349 KRIKKIKSKTYHRLLKKDRLKTASAEIQMDPEAAKELAMKQEFKRAEERLTLKHKNSSKW 408

Query: 415 AKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSSSDDSSDEDDVDENSAGSD 474
           AKRILKRGLD QDEGTRAAITEQL QHALLTRKM SMKD+SS + S ++D  DENSAGSD
Sbjct: 409 AKRILKRGLDVQDEGTRAAITEQLHQHALLTRKMHSMKDTSSDESSDEDDF-DENSAGSD 467

Query: 475 QDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQEYES 534
           +D ASKL A AKEKTL+VL E+D++P+SGVLSLPFMVRG+KKRKE A +E   A+ E+E+
Sbjct: 468 EDGASKLLAKAKEKTLEVLEEEDKIPDSGVLSLPFMVRGLKKRKEAAYEEGKLAINEFEA 527

Query: 535 SLKKLEGTGGEENLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANM 594
           SLK++E  GG ENLKE A+SGRRVFG VK+++   S K   D +Y NSDSE + + + N+
Sbjct: 528 SLKQMELGGGAENLKETASSGRRVFGTVKKQIQEFSNK---DAHYNNSDSEDEFKVKENI 584

Query: 595 DAGNGTNNDVQKNVKTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWK 654
           +A N  NN++ K+V  D+  L  + E   D +FKSF D+VRDPGPKT+Y+VA+FASG+WK
Sbjct: 585 EAANDQNNNLPKHVDIDAGLLREESEIGQDPIFKSFNDIVRDPGPKTTYEVAMFASGSWK 644

Query: 655 KQMKSGNDVDANNEKSMKVVEPALN--DQGLEETAREVDEESETDSEGQMVDGILSSAPK 712
           K MKS N+ + N  K  K VEP  +  DQG      EV  +S+TD EGQMVDG LSS  K
Sbjct: 645 K-MKSENEANGNIIKPPKSVEPPRHNKDQG------EVGGDSDTDDEGQMVDGTLSSGMK 697

Query: 713 ASYKLPSQEELIRLAFAGDDVEEDFEEDKEKVLNEENPVPEKPNLIPGWGQWTDVQRKKG 772
           A+Y+LPSQ ELIR AFAGDDVEEDFE+DK+++L  ENP PEKP L+PGWGQWT VQ+KKG
Sbjct: 698 ATYELPSQAELIRRAFAGDDVEEDFEKDKDEILKGENPEPEKPVLLPGWGQWTHVQQKKG 757

Query: 773 VPSWMLDEHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFE 832
           +PSWML+EHE AKK REEALKKRKDAHLKHVI+SEKLDKKAEKLHTKTLP+P+TSKEVFE
Sbjct: 758 LPSWMLEEHEIAKKKREEALKKRKDAHLKHVIVSEKLDKKAEKLHTKTLPFPYTSKEVFE 817

Query: 833 QSIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKFEEVNPHEKTEDHKGSGKKHKNS 892
           QSIR+P+GPEFNPA  +GAL RP+V KK+G+IIKPIK+++VNPHE  E+H   GKK    
Sbjct: 818 QSIRMPIGPEFNPAVVLGALNRPEVVKKAGVIIKPIKYKDVNPHEGVEEHGQGGKKQNTK 877

Query: 893 RNKGNSGK 900
           ++KG  GK
Sbjct: 878 KSKGMGGK 885

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255564196\|ref\|XP_002523095.1\| U3 small nucleolar RNA-associated protein, putative [Ricinus communis] gi\|223537657\|gb\|EEF39280.1\| U3 small nucleolar RNA-associated protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|147791054\|emb\|CAN68024.1\| hypothetical protein VITISV_003625 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356503904\|ref\|XP_003520740.1\| PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog B-like [Glycine max]	Back alignment and taxonomy information

>gi\|356570968\|ref\|XP_003553654.1\| PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog A-like [Glycine max]	Back alignment and taxonomy information

>gi\|449436485\|ref\|XP_004136023.1\| PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog C-like [Cucumis sativus] gi\|449498517\|ref\|XP_004160559.1\| PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog C-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357511257\|ref\|XP_003625917.1\| U3 small nucleolar RNA-associated protein-like protein [Medicago truncatula] gi\|355500932\|gb\|AES82135.1\| U3 small nucleolar RNA-associated protein-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|145339926\|ref\|NP_567232.3\| U3 ribonucleoprotein-like protein [Arabidopsis thaliana] gi\|332656764\|gb\|AEE82164.1\| U3 ribonucleoprotein-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|110740279\|dbj\|BAF02036.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|3193300\|gb\|AAC19284.1\| T14P8.20 [Arabidopsis thaliana] gi\|7269000\|emb\|CAB80733.1\| AT4g02400 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		911
TAIR\|locus:2133293		855	AT4G02400 "AT4G02400" [Arabido	0.581	0.619	0.533	8.1e-225
SGD\|S000004558		899	UTP14 "Subunit of U3-containin	0.659	0.668	0.249	8.7e-42
UNIPROTKB\|F1RTH6		773	LOC100523416 "Uncharacterized	0.332	0.391	0.293	4.3e-40
UNIPROTKB\|Q3T0Q8		770	UTP14A "U3 small nucleolar RNA	0.323	0.383	0.298	1.9e-38
UNIPROTKB\|Q5TAP6		766	UTP14C "U3 small nucleolar RNA	0.322	0.383	0.276	1.9e-37
UNIPROTKB\|A6QLB4		770	UTP14A "U3 small nucleolar RNA	0.323	0.383	0.301	9.1e-36
ZFIN\|ZDB-GENE-060526-271		785	si:dkey-251i10.3 "si:dkey-251i	0.326	0.378	0.288	1.7e-35
ASPGD\|ASPL0000053495		955	AN0475 [Emericella nidulans (t	0.733	0.699	0.251	3.1e-35
DICTYBASE\|DDB_G0279371		987	utp14 "U3 snoRNP protein" [Dic	0.391	0.361	0.265	1.2e-33
POMBASE\|SPAC57A7.06		929	SPAC57A7.06 "U3 snoRNP protein	0.564	0.553	0.277	4.4e-33

TAIR\|locus:2133293 AT4G02400 "AT4G02400" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1386 (493.0 bits), Expect = 8.1e-225, Sum P(2) = 8.1e-225
 Identities = 298/559 (53%), Positives = 383/559 (68%)

Query:    44 PRLPNSLRKEI--DRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENY 101
             P LPNS+ K I  ++   NS    DE    DE  D YEYEE +P+EES+KN R+D V+NY
Sbjct:    21 PHLPNSILKTIANEKRPLNSDEDDDEIDSDDENVDLYEYEEGVPEEESKKNNRYDRVDNY 80

Query:   102 EYELPEKFXXXXXXXXXXXXXXXXXXXCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGM 161
             +YELPE F                       G S+   +E  +GD D+RH RMLQG+TGM
Sbjct:    81 DYELPEDFEDENVESDDDEDG----------GNSE---NEEGEGD-DDRHTRMLQGLTGM 126

Query:   162 PSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRM 221
             PS  F+ + KK+ V+ +EAYPESEFNPTRDVL+G G IS++DLL PL+GK G++ L KR+
Sbjct:   127 PSAAFQEESKKRPVLYTEAYPESEFNPTRDVLEGKGLISVEDLLAPLEGKPGFNDLNKRI 186

Query:   222 HQMRKKSTSVL-APLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNL 280
             ++M+K + SV+ APLPKPE+E+LERK V    +KD  KW  LVK NREAP++YF++  N+
Sbjct:   187 NRMQKDTQSVVHAPLPKPERERLERKAVKGLVEKDFNKWVHLVKRNREAPTVYFNQPVNV 246

Query:   281 GFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHV 340
             G+STVGAIA+ F+PRTEFEKKMAS++ D+++ EAHK+DG+KLLELN++S+ED+++ R+H+
Sbjct:   247 GYSTVGAIASEFQPRTEFEKKMASVLKDNELGEAHKEDGAKLLELNEVSMEDHIKYRDHI 306

Query:   341 AKMRSLLFRHEMXXXXXXXXXXXTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRA 400
             AKMRSLLFRHE+           TYHRL  KD LK +++  LMDPE AKEEA KQE +R 
Sbjct:   307 AKMRSLLFRHELKSKRIKKIKSKTYHRLKGKD-LKKSAMGALMDPEMAKEEAIKQETRRV 365

Query:   401 EERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKXXXXXXXX 460
             EERMTLKHKN+ +WAKR+L RGL  + +GTRAAI+EQLQ +A L+RKM S          
Sbjct:   366 EERMTLKHKNTGKWAKRMLSRGLTERYDGTRAAISEQLQINATLSRKMNSTNDGSSSDES 425

Query:   461 XXXXXXXXXXAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEE 520
                        GSDQD  SKL A A+EKTLK + EDD+VP SG+LSLPFM R MKK+ EE
Sbjct:   426 DDEEELS---CGSDQDTPSKLIAKAREKTLKTM-EDDDVPNSGLLSLPFMARAMKKKNEE 481

Query:   521 AIQEANAALQEYESSLKKLEGTGGEENLKEGA-ASGRRVFGPVKR-EVLVPSKKIETDNY 578
             A +EA  A  EY    K+LE  GGE+N K+ A  SGRRVFG   + E    SKK ++DN+
Sbjct:   482 ANEEAKRAFGEY----KELENFGGEDNPKKSADVSGRRVFGATSKVEAPKESKK-DSDNF 536

Query:   579 YGNSDSEGDLEAEANMDAG 597
             Y NSDS+ D+E   N D G
Sbjct:   537 YDNSDSDNDMEGIENNDLG 555

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA;ISS

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

SGD\|S000004558 UTP14 "Subunit of U3-containing Small Subunit (SSU) processome complex" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RTH6 LOC100523416 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3T0Q8 UTP14A "U3 small nucleolar RNA-associated protein 14 homolog A" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5TAP6 UTP14C "U3 small nucleolar RNA-associated protein 14 homolog C" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A6QLB4 UTP14A "U3 small nucleolar RNA-associated protein 14 homolog A" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060526-271 si:dkey-251i10.3 "si:dkey-251i10.3" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000053495 AN0475 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0279371 utp14 "U3 snoRNP protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

POMBASE\|SPAC57A7.06 SPAC57A7.06 "U3 snoRNP protein Utp14 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		911
pfam04615		728	pfam04615, Utp14, Utp14 protein	1e-165
COG5644		869	COG5644, COG5644, Uncharacterized conserved protei	2e-56

>gnl\|CDD\|218177 pfam04615, Utp14, Utp14 protein	Back alignment and domain information

 Score =  499 bits (1288), Expect = e-165
 Identities = 267/753 (35%), Positives = 390/753 (51%), Gaps = 51/753 (6%)

Query: 140 DEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQI 199
            + +D D++++H ++L  ++ +  E  + +KKK      E+  ESEFN   +     G++
Sbjct: 7   SDEEDDDDEDKHSKLLSAISSLGGEKKKDEKKKA-DRSEESGKESEFNLPSE--GAGGKL 63

Query: 200 SIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKW 259
           ++ DLL  +Q  S   K  K++ ++ KK  ++ APL K +Q++LERK  YE++K++++KW
Sbjct: 64  TLSDLLGSIQDSSSLKKSLKQLDKISKKKKTLEAPLAKRQQDRLERKAAYEKTKEELSKW 123

Query: 260 EPLVKMNREAPSIYFD-EDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDK-VKEAHKQ 317
           +P+VK NR A  + F       G +TV AIA+ F+PRTE E ++AS++ +     +  K 
Sbjct: 124 DPVVKQNRRAEHLVFPLNKEPSGNATVNAIASQFKPRTELESEIASILEESGLASDEKKL 183

Query: 318 DGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAA 377
              + LEL K+S E+    R  + KMR LLFR E K KRIKKIKSK YHR+ KK++LK  
Sbjct: 184 TPFEELELKKLSPEEAKARRAELRKMRELLFREEAKAKRIKKIKSKKYHRVHKKEKLKEE 243

Query: 378 SVE----MLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAA 433
             E    +  DPEAA EE  K E +RAEERMTLKHKN+S+WAK +LK G    DE  R A
Sbjct: 244 LKEFEELVKADPEAALEELEKLERRRAEERMTLKHKNTSKWAKSMLKTGRAKYDEEARKA 303

Query: 434 ITEQLQQHALLTRKMKSMKDSS-SSDDSSDEDDVDENSAGSDQDRASKLYATAKEKTLKV 492
           + EQL+Q   L RK++    S    D+ SD ++ DE+    D D  +      ++K  K+
Sbjct: 304 LEEQLRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENP--WMLRKKLGKL 361

Query: 493 LAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQEYESSLKKLEGTGGEENLKEGA 552
              +D+   SG+LS+ FM R   ++KEE   E     +E    L+  E +  EEN +   
Sbjct: 362 KEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRE----LEGEEESDEEENEEPSK 417

Query: 553 A-SGRRVFGPVKREVLVPSKKIETDNY-----YGNSDSEGDLEAEANMDAGNGTNNDVQK 606
              GRR FGP   E    SKK++ +N         SD E +LE E         N  +++
Sbjct: 418 KNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKR 477

Query: 607 NVKTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKQMKSGNDVDAN 666
           + K                  +  E    +P  KT+  V   A     K+  S     A 
Sbjct: 478 SEKAQK-------------EEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAA 524

Query: 667 NEKSMKVVEPALNDQGLEETAREVDEESETDS-------EGQMVDGILSSAPKASYKLPS 719
           N+ S   V+     +  +    + D   E DS       E    D  L    K       
Sbjct: 525 NKISKAAVKVKKKKKKEKSIDLDDDLIDEEDSIKLDVDDEEDEDDEELPFLFK------- 577

Query: 720 QEELIRLAFAGDDVEEDFEEDKEKVLNEENPVPEKPNLIPGWGQWTDVQRKKGVPSWMLD 779
           Q++LI+ AFAGDDV  +FE++K++V+ EE+P  E    +PGWG W     KK        
Sbjct: 578 QKDLIKEAFAGDDVVAEFEKEKKEVIEEEDP-KEIDLTLPGWGSWAGDGIKKRKKKRKRK 636

Query: 780 EHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQSIRVPV 839
                K    +  +KRKD  LK+VII+EK +KKA K     LP+PF SKE +E+S+R+P+
Sbjct: 637 RRFLTKIEGVK-KEKRKDKKLKNVIINEKRNKKAAKYQVSQLPFPFESKEQYERSLRMPI 695

Query: 840 GPEFNPATAVGALTRPDVKKKSGIIIKPIKFEE 872
           GPE+N  T    LT+P V  K G IIKP+K   
Sbjct: 696 GPEWNTKTTFQKLTKPRVVTKQGTIIKPMKAPF 728

This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 728

>gnl\|CDD\|227931 COG5644, COG5644, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		911
PF04615		735	Utp14: Utp14 protein; InterPro: IPR006709 A large	100.0
COG5644		869	Uncharacterized conserved protein [Function unknow	100.0
KOG2172		654	consensus Uncharacterized conserved protein [Funct	100.0
KOG2172		654	consensus Uncharacterized conserved protein [Funct	96.46
PF10175		104	MPP6: M-phase phosphoprotein 6; InterPro: IPR01932	83.4

>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]	Back alignment and domain information

Probab=100.00  E-value=4.2e-136  Score=1230.36  Aligned_cols=676  Identities=39%  Similarity=0.571  Sum_probs=478.3

Q ss_pred             CCCCchHHHHHHHhhhhCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCccchhhhhccccCCcchhHHHHHHH
Q 002540          143 QDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMH  222 (911)
Q Consensus       143 ~d~dd~~~h~klL~~i~~l~~~~~~~~~r~k~~~~tE~~~esEF~l~~~~~~g~~kl~l~dLl~~l~~~~~~~~lkk~l~  222 (911)
                      +++||+++|.+||+.|++|.+....+. +++...+++.+.+|||+|++.+  +.++|+|+|||++|. ++.+..++++|.
T Consensus        14 ~~~~~~~~~~~L~~~i~~l~~~~~~~~-~~~~~~~~~~~~~sef~~~~~~--~~~kl~l~dLl~~l~-~~~~~~~~k~l~   89 (735)
T PF04615_consen   14 DDEDDEEKHDKLLKAISSLDSKKRKKK-KKRRERIEESGKESEFNLSSSG--ADDKLSLSDLLSSLS-DSSLSKLKKQLK   89 (735)
T ss_pred             ccccChHHHHHHHHHHHhccccccccc-cccccccccccCcccccCCccC--ccCcccHHHHHhhhc-chhHHHHHHHHH
Confidence            557789999999999999977754332 2344455566789999998642  234999999999999 889999999999


Q ss_pred             HhhhccccccCCCCchHHHHHHHHHHHHHHHHhhhccHHHHHhhcCCCceeccC-CCCCCCcchhhhhccCCCCCHHHHH
Q 002540          223 QMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDE-DTNLGFSTVGAIAAGFEPRTEFEKK  301 (911)
Q Consensus       223 ~l~~~~~~l~~PL~k~~qeRieR~aAYe~~k~el~kW~~~Vk~NR~Ae~L~Fp~-~~~~~~~~~~~~~s~~kp~T~LE~e  301 (911)
                      .+.++..+|++||++++|+||+|+|||++|+++|++|.|||++||+|+||+||+ +......++..+++.|+|.|+||++
T Consensus        90 ~~~~~~~~l~~PL~~~~~~r~~R~~ay~~~k~~~~kW~~~V~~nr~a~~l~Fp~~~~~~~~~~~~~~~~~~~p~t~lE~~  169 (735)
T PF04615_consen   90 KVSKKKKTLAAPLPKREQERIERKAAYEKTKKELDKWDPTVKRNREAEHLVFPLQKEKPEDSSVASLASKFKPRTELEKE  169 (735)
T ss_pred             HhhcccCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCeeeccCCCccccccchhhhhhccCCCCHHHHH
Confidence            998877789999999999999999999999999999999999999999999998 4566678888999999999999999


Q ss_pred             HHHHhhhccch-hhhhccchhhhhhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchhhHHHHhhHHHHHHHHHh
Q 002540          302 MASLVNDDKVK-EAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVE  380 (911)
Q Consensus       302 i~~lL~~s~l~-~~~~~~~~e~l~~~~ms~EE~k~Rr~EL~kmRaL~fr~E~KaKRikKIKSK~YhRI~KKek~K~~~k~  380 (911)
                      |++||+.++++ .......++.+++++||+||+++||+||++||+||||+|+|||||||||||+|||||||+++|+++++
T Consensus       170 i~~~L~~~~~~~~~~~~~~~e~~~~~~ms~eE~~~r~~el~~~R~L~~~~e~KakR~kKIKSK~yhri~kk~k~k~~~k~  249 (735)
T PF04615_consen  170 IASILEESGLASDEKKLTEAEELALKKMSLEEAKERRAELAKMRALMFYEEAKAKRIKKIKSKTYHRILKKEKEKEQEKE  249 (735)
T ss_pred             HHHHHHHcCCCcchhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcch
Confidence            99999999998 44555678899999999999999999999999999999999999999999999999999999988776


Q ss_pred             hc----CCHHHHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHhccccCCHHHHHHHHHHHHHhHHHHHHHhhcCCCCC
Q 002540          381 ML----MDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSS  456 (911)
Q Consensus       381 ~e----~dpe~a~ee~ek~E~~RA~ERmtLKHkntsKWAK~~~~~G~~~~D~e~R~ai~EQL~~~eeL~~Ki~~~~~~ss  456 (911)
                      |+    .||++|+++++++|++||+|||||||+|||||||+|+++|+++||.++|++|+|||++|++||+||++..++++
T Consensus       250 ~e~l~~~dpe~a~e~~e~~e~~Ra~ERmtlkHkn~sKWAK~~~~~G~~~~d~~~R~al~eql~~~~eL~~Ki~~~~~~~~  329 (735)
T PF04615_consen  250 FEELEESDPEAAEEELEKLEKKRAEERMTLKHKNTSKWAKSMLRRGRAKYDEEARQALQEQLRRGEELTRKIEGEDSSDS  329 (735)
T ss_pred             HHHHhhcChhhhHHHHHHHHHHHHHHHhhccccccCHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence            63    79999999999999999999999999999999999999999999999999999999999999999999765433


Q ss_pred             CCCC-CCccccccc-----cCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCcccccCcHHHHHHHHHhHHHHHHHHHHHHH
Q 002540          457 SDDS-SDEDDVDEN-----SAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQ  530 (911)
Q Consensus       457 Sded-~de~e~~e~-----~~~~de~~~~~l~~~ake~~l~~l~~d~e~p~~GL~~MkFMqrA~~~~kee~~ee~~~~lr  530 (911)
                      ++++ +++++++.+     .++.++|+.......     +..  .......+|||+|+||++|++++++++.+++..+++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~gl~~mkFMk~a~erk~ee~~~e~~~l~~  402 (735)
T PF04615_consen  330 DEDEESDEEEEDEDDDEDDDDDDNPWMLRKKLEK-----LKE--EEEDEEKKGLMSMKFMKRAEERKKEENDEEAEELRR  402 (735)
T ss_pred             ccccccccccchhhhccccccccCHHHHHHhhhh-----hhh--cccchhhhhccchHHHHhhHHhHHHHHHHHHHHHHH
Confidence            3221 111111111     122344433222211     111  112223789999999999999999999999999999


Q ss_pred             HHHHhhhhhcCCCCcc-cccccccccccccCcccccccCCcccccccccCCCCCCCcchHHhhhcccCCCC-Cccccccc
Q 002540          531 EYESSLKKLEGTGGEE-NLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGT-NNDVQKNV  608 (911)
Q Consensus       531 ele~~l~~~e~~~~~e-~~~~~~~~GRr~f~~~~~~~~~~~~k~~~~~~~~~sd~e~~~~~~~~~~~e~~~-~~~~~~~~  608 (911)
                      +|+..-.    ...+. ........||++|+++........... ......  ........+......... ..+ ....
T Consensus       403 Ele~~~~----~~~e~~~~~~~~~~gR~~~~~~~~~~~~~s~~~-~~~~~~--~~k~e~~sd~~~~~~~~~~~~~-~~~~  474 (735)
T PF04615_consen  403 ELEEEES----EDEEEEEENEEKNVGRRKFGPGSSEKAKESKKD-SKENKS--ESKEEKSSDEEEDKENKMEDKV-EKEE  474 (735)
T ss_pred             HHhhhhh----cccccccccccccccccccccccccccccccch-hhhhhh--hhhhcccccccccccccccccc-cccc
Confidence            9986211    11111 123456789999998541111000000 000000  000000000000000000 000 0000


Q ss_pred             c-cccccccccCCCCCCccccccccccCCCCCCCcccccccccCchhhhcccC----------------------Ccccc
Q 002540          609 K-TDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKQMKSG----------------------NDVDA  665 (911)
Q Consensus       609 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~k~~----------------------~~~~~  665 (911)
                      . ......         ....           ...........++|+......                      ..+..
T Consensus       475 ~~~~~~k~---------~~~~-----------~~~~~~~~~~eNpwl~~~~k~~k~~~~~~~k~~~~~~~~~~~~~~~~~  534 (735)
T PF04615_consen  475 NKKKKKKS---------ESAE-----------DEEEKEEDDKENPWLKEESKKSKSKKKKKKKKKEISSEVNKSSNKISK  534 (735)
T ss_pred             cccccccc---------cccc-----------cccccccccccchhhhcccccccccccccccccccccccccccccccc
Confidence            0 000000         0000           000000011233333210000                      00000


Q ss_pred             cccc--ccccc------cccccccCcccccccccccccccccccccccccccCCccCCCCccHHHHHHHhcCCCchHHHH
Q 002540          666 NNEK--SMKVV------EPALNDQGLEETAREVDEESETDSEGQMVDGILSSAPKASYKLPSQEELIRLAFAGDDVEEDF  737 (911)
Q Consensus       666 ~~~k--~~k~~------~~v~~~~~~~~~~~~~~~~sd~d~e~~~vd~~l~s~~k~~~~~~~Q~eLIkeAFAgDDVv~eF  737 (911)
                      ....  ..+..      ..+.+..............++++++..            ...++.|++||++||||||||++|
T Consensus       535 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~------------~~~~~~q~~li~~AFA~DdV~~eF  602 (735)
T PF04615_consen  535 SQAKVKKKKKKEKSKDESNILIDEENEVQIKSVDTDEDDEDDEE------------DPFAFEQRELIREAFAGDDVVAEF  602 (735)
T ss_pred             cccccccccccccccccccccccccchhcccccccccccccchh------------hhhhHHHHHHHHHHhcCCchHHHH
Confidence            0000  00000      000000000000000000001111110            011369999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCccccccccccccCCCCcchhhHHHHHHhHHHHhhcccccCCCceEEcccccccccccc
Q 002540          738 EEDKEKVLNEENPVPEKPNLIPGWGQWTDVQRKKGVPSWMLDEHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLH  817 (911)
Q Consensus       738 ~kEK~~~ie~e~pk~e~D~tLPGWGsW~G~~~Kk~~ps~~~~~~e~~KKkr~~~~kkRKDa~L~~VIInEKrdkK~~Kyq  817 (911)
                      ++||.++++++.|+ ++|+||||||+|||.|.+++.++|+.+++. .+|..+..+++|+|++|+||||||++|+|++|||
T Consensus       603 ~~eK~~~~e~e~pk-~~~~~LPGWG~W~G~g~~~~~~~~~~~~~~-~~k~~~~~~~~RkD~~l~~VIInEk~~kk~~k~~  680 (735)
T PF04615_consen  603 EKEKEEEIEEEKPK-EIDLTLPGWGSWAGPGIKKSKKKRKKKKRF-VKKIPGVKKKKRKDAKLKHVIINEKRDKKAAKYQ  680 (735)
T ss_pred             HHHHHHHHhhhCCc-ccccCCCCcccccCCCcCccchhhhhhhhh-hhccccccccCCcccccCCeeecCcccchhhhhc
Confidence            99999999999997 589999999999999877665443332222 2333344567999999999999999999999999


Q ss_pred             cCCCCCCCCCHHHHHHHhcCCCCCCCChHHHHhhhccCceeccCCccccCCCcc
Q 002540          818 TKTLPYPFTSKEVFEQSIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKFE  871 (911)
Q Consensus       818 v~~LPfPFts~eQyErSlR~PIG~EWNT~~afqkLt~PrVvtK~G~II~Pi~~e  871 (911)
                      |++|||||+|++|||+|||+||||||||.++||+||+|+|+||+|+||.||+++
T Consensus       681 ~~~lP~pf~~~~qyE~slr~PiG~ewnt~~~~~~l~~P~V~~k~G~iI~P~~~p  734 (735)
T PF04615_consen  681 VSELPFPFTSKEQYERSLRQPIGPEWNTETAHQKLTKPRVVTKAGTIIEPMKKP  734 (735)
T ss_pred             cccCCCCCCCHHHHHHHhcCCCCCCcChHHHHHHhhCCeeeccCCceeCCCCCC
Confidence            999999999999999999999999999999999999999999999999999875

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>COG5644 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2172 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2172 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10175 MPP6: M-phase phosphoprotein 6; InterPro: IPR019324 This entry describes M-phase phosphoprotein 6 (MPP6), which is involved in generation of the 3' end of the 5	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		911
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 61.0 bits (147), Expect = 1e-09
 Identities = 64/507 (12%), Positives = 134/507 (26%), Gaps = 125/507 (24%)

Query: 36  GEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPL--PQEESRKNR 93
           GE + +    L       +D  +   +    + I S E     E +  +      S   R
Sbjct: 12  GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE-----EIDHIIMSKDAVSGTLR 66

Query: 94  RFDPVENYEYELPEKFEDENVLSDD--------EDDNNDIENNCGRRGISKQVGDEFQDG 145
            F  + + + E+ +KF +E VL  +        + +          R   +Q    + D 
Sbjct: 67  LFWTLLSKQEEMVQKFVEE-VLRINYKFLMSPIKTEQRQPSMM--TRMYIEQRDRLYNDN 123

Query: 146 D-----NDERH------------LRMLQGVT--GMPSEFFEGKKKKKNVVISEAYPESEF 186
                 N  R             LR  + V   G+      G    K  V  +     + 
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG---SG----KTWVALDVCLSYKV 176

Query: 187 NPTRDVLDGN------GQI-SIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAPLPKPE 239
              +  +D            S + +LE LQ      ++          S+++   L    
Sbjct: 177 ---QCKMDFKIFWLNLKNCNSPETVLEMLQ--KLLYQIDPNWTSRSDHSSNI--KLRIHS 229

Query: 240 -QEKLERKVVYEQSKK------DITKWEP-LVKMNREAPSIYFD---------EDTNLGF 282
            Q +L R +  +  +       ++                  F+             +  
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNV--QNAKAWN--------AFNLSCKILLTTRFKQVTD 279

Query: 283 STVGA---------IAAGFEPRTEFEKKMASLVN---DDKVKEAHKQDGSKLLELNKISV 330
               A          +    P  E +  +   ++    D  +E      +       +S+
Sbjct: 280 FLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLT--TNPRR----LSI 332

Query: 331 EDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAK- 389
              + E           ++H +   ++  I   +   +L+    +     + + P +A  
Sbjct: 333 ---IAESIRDGLATWDNWKH-VNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 390 ---------EEARKQEFKRAEERMTLKHKNS--SRWAKRILKRGLDAQDEGTRAAITEQL 438
                     +  K +       +   HK S   +  K           E  +  +  + 
Sbjct: 388 PTILLSLIWFDVIKSD---VMVVVNKLHKYSLVEKQPKESTISIPSIYLE-LKVKLENEY 443

Query: 439 QQHALLTRKMKSMKDSSSSDDSSDEDD 465
             H  +       K   S D      D
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLD 470

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00