Citrus Sinensis ID: 002541

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910
Protein Sequence
MEDVKIAEEMPPPESTLSPKADNGSSSELPEDPVTNGKVSNELSNMETSKPKPVEDTADVPVGGQDEVLSADNSVSNSAIAIDESETDHRDTVMEDSKTEATKDNPNGKQSQDDGSVIDSHVHTDNSDIPSVSSPQVHDSRDDQRIEPSDKLALPHTELASIAVRAPGTVDSPKHVLDSPKPGDSPKYVLNSPKHVLDSPKSGDSPKYVLNSPKHLVNSPKHVFGSPKQFGSPRYGISSPKLAKQGEMKRGLIDTTAPFESVKEVVSKFGGIVDWKAHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRRKAGESGQGVNSTKIPTPSLEEKKDSKKYDRMSSAAAVPNMTSPKASMQGSNTETESSPEAKGPKKKKKSLFPRLFMFLARRRSHASKSSST
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHHHccccHHHHcccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHccccccccccccccccccHHHcccHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccHHEcccccccccccccEEcccccccccccccccccHHccccHHHcccccccccccccccccHHcccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
medvkiaeempppestlspkadngssselpedpvtngkvsnelsnmetskpkpvedtadvpvggqdevlsadnsvsnsaiaidesetdhrdtvmedskteatkdnpngkqsqddgsvidshvhtdnsdipsvsspqvhdsrddqriepsdklalphtelasiavrapgtvdspkhvldspkpgdspkyvlnspkhvldspksgdspkyvlnspkhlvnspkhvfgspkqfgsprygisspklakqgemkrglidttapfeSVKEVVSKFGGIVDWKAHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLkeesneeghsngeleeperkthTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQesesaqrtddvdsptgvtLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRRkagesgqgvnstkiptpsleekkdskkydrmssaaavpnmtspkasmqgsntetesspeakgpkkkkkslfPRLFMFLARrrshaskssst
Flexible Loop (DISEMBL)
medvkiaeempppestlspkadngssselpedpvtngkvsnelsnmetskpkpvedTADVPVGGQDevlsadnsvsnsaiaidesetdhrdTVMEDskteatkdnpngkqsqdDGSVIDSHVHtdnsdipsvsspqvhdsrdDQRIEPSDKLALPHTELASIAVRAPGTVDSPKHVLDSPKPGDSPKYVLNSPKHVLDSPKSGDSPKYVLNSPkhlvnspkhvfgspkqfgspryGISSPKLAKQGEMKRGLIdttapfesvKEVVSKfggivdwkahrmqtverRKYVEQelersheempeyrkrseaaeVAKNQVLKELDQTKRLVEELKLNLeraqteehqakqdsELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAvselksvkdevesLRKDYaslvtekdiavKKAEEaisaskevekTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLkeesneeghsngeleeperkthTDIQAAVASAKKELEEVKLNIekataevnCLKVAATSLQSELEREKSALAAIRQREGMASVAVASleaeldrtrSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEaeqakagastiESRLTAARKEIEAARASEKLALAAIKALqesesaqrtddvdsptgvTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVakaselrslerLEEVNKEIATRKEALKVAMEkaekakegklgieQELRKWRAEHEqrrkagesgqgvnstkiptpsleekkdskkyDRMSsaaavpnmtspkasmqgsntetesspeakgpkkkkkslfPRLFMFlarrrshaskssst
Low Complexity Region (SEG)
MEDVKIAEEMPPPESTLSPKADNGSSSELPEDPVTNGKVSNELSNMETSKPKPVEDTADVPVGGQDEVLSADNSVSNSAIAIDESETDHRDTVMEDSKTEATKDNPNGKQSQDDGSVIDSHVHTDNSDIPSVSSPQVHDSRDDQRIEPSDKLALPHTELASIAVRAPGTVDSPKHVLDSPKPGDSPKYVLNSPKHVLDSPKSGDSPKYVLNSPKHLVNSPKHVFGSPKQFGSPRYGISSPKLAKQGEMKRGLIDTTAPFESVKEVVSKFGGIVDWKAHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKeslesahaahleaeeQRIGAAMARDQDSHlwekelkqaeeelqkltqqILSAKDLRSKLDTASALLLDLKAELSAYMESKLKeesneeghsngeleepeRKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQaageelhkakeeaeqakagaSTIESRLTAARKEIeaaraseklalaaIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKAselrslerleeVNKEIATRkealkvamekaekakegkLGIEQELRKWRAEHEQRRKAGESGQGVNSTKIPTPSLEEKKDSKKYDRMSSAAAVPNMTSPKASMQGSNTETESSPEAKGPkkkkkSLFPRLFMFLarrrshasksssT
Disordered region (IsUnstruct)
***********************************************************************************************************************************************************************************************************************************************************LIDTTAPFESVKEVVSKFGGIVDWKAHRMQTV**************************************************************************************************************************LV**************************LTIELI******************************************************************ALLLDL****************************************************LNIEKATAEVNCLKVAA***************************************************************************************************************************************************************************VVAAISQI*******************************************************************************************************************************************************
Disordered Region (DISOPRED)
****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************L*****************
Disordered Region (DISEMBL)
*********************************VTNGKVSNELSNMETSKPKPVEDTADVPVGGQDEVLSADNSVSNSAIAIDESE***************************DGSVIDSHVHTDN********************EPSDKLALPHTELASIAVRAPGTVDSPKHVLDSPKPGDSPKYVLNSPKHVLDSPKSGDSPKYVLNSPKHLVNSPKHVFGSPKQFGSPRYGISSPKLAKQGEMKRGLIDTTAPFESVKEVVSKFGGIVDWKAHRMQTVERRKY*******************EAAEVAKNQVLKELDQTKRLVEELKLNLERA***********ELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESK***********************************ELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQV************************************ESRLTAARKEIEAARASEKLALAAIKALQ****************VTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAM*********KLGIEQELRKW***************************************************************************KSLFPRLFMFLAR***********
Disordered Region (DISPRO)
**DVKIAEEMP*******************************************************EV*SADNSVSNSAIAIDESETD*****************************************************************************************************************************************************************RGLIDTTAPFESVKEVVSKFGGIVDWKAHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRRKAG********************************************************AKGPKKKKKSLFPRLFMFLARRR*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDVKIAEEMPPPESTLSPKADNGSSSELPEDPVTNGKVSNELSNMETSKPKPVEDTADVPVGGQDEVLSADNSVSNSAIAIDESETDHRDTVMEDSKTEATKDNPNGKQSQDDGSVIDSHVHTDNSDIPSVSSPQVHDSRDDQRIEPSDKLALPHTELASIAVRAPGTVDSPKHVLDSPKPGDSPKYVLNSPKHVLDSPKSGDSPKYVLNSPKHLVNSPKHVFGSPKQFGSPRYGISSPKLAKQGEMKRGLIDTTAPFESVKEVVSKFGGIVDWKAHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSELAKLRVEEMEQGIADDASVAARAQLEVAKARxxxxxxxxxxxxxxxxxxxxxxxxxxxxKDIAVKKxxxxxxxxxxxxxxxxxxxxxLIATKESLESAHAAHLEAEEQRIGAAMARDQDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSAYMESKLKEESNEEGHSNGELEEPERKTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEGMASVAxxxxxxxxxxxxxxxxxxxxxxxxxxxxTVELPKQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHEQRRKAGESGQGVNSTKIPTPSLEEKKDSKKYDRMSSAAAVPNMTSPKASMQGSNTETESSPEAKGPKKKKKSLFPRLFMFLARRRSHASKSSST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	910	2.2.26 [Sep-21-2011]
O48724	807	Protein WEAK CHLOROPLAST	yes	no	0.730	0.824	0.702	0.0
Q9SZB6	779	Protein WEAK CHLOROPLAST	no	no	0.790	0.922	0.567	0.0
Q9FMN1	751	Protein WEAK CHLOROPLAST	no	no	0.715	0.866	0.509	1e-160
Q9C638	752	Protein WEAK CHLOROPLAST	no	no	0.730	0.884	0.489	1e-153
Q9LVQ4	649	WEB family protein At5g55	no	no	0.590	0.827	0.285	3e-23
F4ISY0	522	WEB family protein At2g38	no	no	0.323	0.563	0.308	5e-16
Q9FWW5	548	WEB family protein At1g12	no	no	0.557	0.925	0.233	4e-10
O23564	527	Putative WEB family prote	no	no	0.250	0.432	0.286	2e-06
Q9LYL6	446	WEB family protein At3g56	no	no	0.334	0.681	0.269	9e-05

>sp|O48724|WEB1_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 OS=Arabidopsis thaliana GN=WEB1 PE=1 SV=1

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/685 (70%), Positives = 568/685 (82%), Gaps = 20/685 (2%)

Query: 225 GSPKQFGSPRYGIS--SPKLAKQGEMKRGLIDTTAPFESVKEVVSKFGGIVDWKAHRMQT 282
           GSP+   SPR+  S  S    K  +  RGLIDT APFESVKE VSKFGGI DWK+HRMQ 
Sbjct: 135 GSPRTVSSPRFSGSPVSTGTPKNVDSHRGLIDTAAPFESVKEAVSKFGGITDWKSHRMQA 194

Query: 283 VERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEE 342
           VERRK +E+EL++ HEE+PEY+  SE AE AK QVLKEL+ TKRL+E+LKLNL++AQTEE
Sbjct: 195 VERRKLIEEELKKIHEEIPEYKTHSETAEAAKLQVLKELESTKRLIEQLKLNLDKAQTEE 254

Query: 343 HQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKD 402
            QAKQDSELAKLRVEEMEQGIA+D SVAA+AQLEVAKARH  A++EL SVK+E+E+L K+
Sbjct: 255 QQAKQDSELAKLRVEEMEQGIAEDVSVAAKAQLEVAKARHTTAITELSSVKEELETLHKE 314

Query: 403 YASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGA 462
           Y +LV +KD+AVKK EEA+ ASKEVEKTVEELTIELIATKESLESAHA+HLEAEEQRIGA
Sbjct: 315 YDALVQDKDVAVKKVEEAMLASKEVEKTVEELTIELIATKESLESAHASHLEAEEQRIGA 374

Query: 463 AMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESK 522
           AMARDQD+H WEKELKQAEEELQ+L QQI S+KDL+SKLDTASALLLDLKAEL AYMESK
Sbjct: 375 AMARDQDTHRWEKELKQAEEELQRLNQQIHSSKDLKSKLDTASALLLDLKAELVAYMESK 434

Query: 523 LKEESNEEGHSNGELEEP--ERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAA 580
           LK+E+ +   +     +P  E  +H D+ AAVASAKKELEEV +NIEKA AEV+CLK+A+
Sbjct: 435 LKQEACDSTTNT----DPSTENMSHPDLHAAVASAKKELEEVNVNIEKAAAEVSCLKLAS 490

Query: 581 TSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELP 640
           +SLQ ELE+EKS LA+I+QREGMAS+AVAS+EAE+DRTRSEIA VQ KEK+AREK VELP
Sbjct: 491 SSLQLELEKEKSTLASIKQREGMASIAVASIEAEIDRTRSEIASVQSKEKDAREKMVELP 550

Query: 641 KQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEK 700
           KQLQ AA+EAD+AKSLA+ A EEL KAKEEAEQAKAGAST+ESRL AA+KEIEAA+ASE+
Sbjct: 551 KQLQQAAEEADEAKSLAEVAREELRKAKEEAEQAKAGASTMESRLFAAQKEIEAAKASER 610

Query: 701 LALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIE 760
           LALAAIKAL+ESES  + +D DSP  VTLSLEEYYELSKRAHEAEE AN RV AA+S+IE
Sbjct: 611 LALAAIKALEESESTLKANDTDSPRSVTLSLEEYYELSKRAHEAEELANARVAAAVSRIE 670

Query: 761 VAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRRK 820
            AK +E+RSLE+LEEVN+++  RK+ALK A EKAEKAKEGKLG+EQELRKWRAEHEQ+RK
Sbjct: 671 EAKETEMRSLEKLEEVNRDMDARKKALKEATEKAEKAKEGKLGVEQELRKWRAEHEQKRK 730

Query: 821 AGESGQGVNSTKIPTPSLEEKKDSKKYDRMSSAAAVPNMTSPKASMQGS--NTETESSPE 878
           AG+   GVN+ K    +L+E  +  K ++  S  AV   +SP  S  G+  N+ET  SP+
Sbjct: 731 AGD---GVNTEK----NLKESFEGGKMEQ--SPEAVVYASSPSESY-GTEENSETNLSPQ 780

Query: 879 AKGPKKKKKSLFPRLFMFLARRRSH 903
            K  KKKKK  FPR FMFL++++SH
Sbjct: 781 TKSRKKKKKLSFPRFFMFLSKKKSH 805

Required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photorelocation movement via cp-actin filaments regulation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZB6|WEL1_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS=Arabidopsis thaliana GN=WEL1 PE=2 SV=1

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/804 (56%), Positives = 580/804 (72%), Gaps = 85/804 (10%)

Query: 110 QSQDDGSVIDSHVHTDNSDIPSVSSPQVHDSRDD----QRIEPSDKLALPHTELASIAVR 165
           QS++D S  +  ++ D++ +PS S  QV +++D       + PS ++ LP     +    
Sbjct: 50  QSEED-SAENGKIYMDDTFLPSKS--QVKETQDSPTTPSFVSPSAEIVLPRV---NTKYE 103

Query: 166 APGTVDSPKHVLDSPKPGDSPKYVLNSPKHVLDSPKSGDSPKYVLNSPKHLVNSPKHVFG 225
           A GT  +      SP+P  SP+ +                                   G
Sbjct: 104 AEGTTRNAV----SPRPLYSPRSI-----------------------------------G 124

Query: 226 SPKQFGSPRYGISSPKLAKQGEMK----RGLIDTTAPFESVKEVVSKFGGIVDWKAHRMQ 281
           SP+   SPR+  SS  L+    +     R  IDT +PFESVKE VSKFGGI DWKAHRM+
Sbjct: 125 SPRALLSPRFAGSSSPLSNGTPISMDSFRDSIDTASPFESVKEAVSKFGGITDWKAHRMK 184

Query: 282 TVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTE 341
            +ERR +VEQEL++  EE+PEY+K+SE  E++K   ++EL+ TKRL+EELKLNLE+A+TE
Sbjct: 185 VLERRNFVEQELDKIQEEIPEYKKKSEMVEMSKMLAVEELESTKRLIEELKLNLEKAETE 244

Query: 342 EHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRK 401
           E QAKQDSELAKLRV+EMEQGIAD+ASVA++AQLEVA+ARH +A+SEL+SVK+E+++L+ 
Sbjct: 245 EQQAKQDSELAKLRVQEMEQGIADEASVASKAQLEVAQARHTSAISELESVKEELQTLQN 304

Query: 402 DYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIG 461
           +Y +LV EKD+AVK+AEEA+ ASKEVE+ VEELTIELIATKESLE AH++HLEAEE RIG
Sbjct: 305 EYDALVKEKDLAVKEAEEAVIASKEVERKVEELTIELIATKESLECAHSSHLEAEEHRIG 364

Query: 462 AAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYME- 520
           AAM RDQ++H WEKELKQAEEELQ+L Q ++S K+L+ KL+ ASALLLDLK EL+ + E 
Sbjct: 365 AAMLRDQETHRWEKELKQAEEELQRLKQHLVSTKELQVKLEFASALLLDLKKELADHKES 424

Query: 521 SKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAA 580
           SK+KEE++E   +N E+   E+   TDIQ AVASAKKELEEV  N+EKAT+EVNCLKVA+
Sbjct: 425 SKVKEETSETVVTNIEISLQEK--TTDIQKAVASAKKELEEVNANVEKATSEVNCLKVAS 482

Query: 581 TSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELP 640
           +SL+ E+++EKSAL +++QREGMASV VASLEAE+D TR EIALV+ KEKE RE+ VELP
Sbjct: 483 SSLRLEIDKEKSALDSLKQREGMASVTVASLEAEIDITRCEIALVKSKEKETREEMVELP 542

Query: 641 KQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEK 700
           KQLQ A+QEAD+AKS A+ A EEL K++EEAEQAKAGAST+ESRL AA+KEIEA +ASE+
Sbjct: 543 KQLQQASQEADEAKSFAELAREELRKSQEEAEQAKAGASTMESRLFAAQKEIEAIKASER 602

Query: 701 LALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIE 760
           LALAAIKALQESES+ + + VDSP  VTL++EEYYELSKRAHEAEE AN RV AA+S++ 
Sbjct: 603 LALAAIKALQESESSSKENAVDSPRTVTLTIEEYYELSKRAHEAEEAANARVAAAVSEVG 662

Query: 761 VAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRRK 820
            AK +E RSLE+LEEVNKE+  RK  L  AMEKAEKAKEGKLG+EQELRKWR   E++RK
Sbjct: 663 EAKETEKRSLEKLEEVNKEMVERKATLAGAMEKAEKAKEGKLGVEQELRKWREVSEKKRK 722

Query: 821 AGES-GQGVNSTKIPTPSLEEKKDSKKYDRMSSAAAVPNMTSPKASMQGSNTETESSPEA 879
            G S G+ +  +K       EK+         +  +V N            TET   P+ 
Sbjct: 723 NGSSHGKSIQGSK-------EKE---------AETSVSN-----------ETETNPIPQV 755

Query: 880 KGPKKKKKSLFPRLFMFLARRRSH 903
             P KKKK LFPR FMFL +++SH
Sbjct: 756 -NPVKKKKKLFPRFFMFLMKKKSH 778

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMN1|WEL3_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 3 OS=Arabidopsis thaliana GN=WEL3 PE=2 SV=1

 Score =  565 bits (1457), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 362/710 (50%), Positives = 489/710 (68%), Gaps = 59/710 (8%)

Query: 205 SPKY-VLNSPKHLVNSPKHV----FGSPKQFGSPRYGISSPKLAKQGEMKRGLIDTTAPF 259
           SP+  V  SP+  V  P+ V    FGSP+   SP +G  SP          G+IDT +PF
Sbjct: 93  SPRLRVPASPRAFV-YPRSVESPRFGSPRSVESPCFG--SPI---------GVIDTASPF 140

Query: 260 ESVKEVVSKFGGIVDWKAHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLK 319
           ESV+E VSKFGGI DWKAH++QT+ERRK V++ELE+  E MPEY++ +E AE AK   L+
Sbjct: 141 ESVREAVSKFGGITDWKAHKIQTIERRKMVDEELEKIQEAMPEYKREAELAEEAKYDALE 200

Query: 320 ELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAK 379
           EL+ TK L+EELKL LE+A+ EE QAKQDSELA++RVEEME+G+A++ASVA + QLEVAK
Sbjct: 201 ELENTKGLIEELKLELEKAEKEEQQAKQDSELAQMRVEEMEKGVANEASVAVKTQLEVAK 260

Query: 380 ARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELI 439
           AR V+A SEL+SV++E+E +  +Y  ++ EK++A ++A+ A+  +KE+E+T++ L+IELI
Sbjct: 261 ARQVSATSELRSVREEIEMVSNEYKDMLREKELAAERADIAVLEAKEIERTMDGLSIELI 320

Query: 440 ATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRS 499
           ATKE LES H AHLEAEE+R   AMARDQD + WEKELK  E ++++L Q++ +A D+++
Sbjct: 321 ATKELLESVHTAHLEAEEKRFSVAMARDQDVYNWEKELKMVENDIERLNQEVRAADDVKA 380

Query: 500 KLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKEL 559
           KL+TASAL  DLK EL+A+ +            S+G L         DI AAV SA++EL
Sbjct: 381 KLETASALQHDLKTELAAFTDI-----------SSGNL----LLEKNDIHAAVESARREL 425

Query: 560 EEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTR 619
           EEVK NIEKA +EV  LK+ A SLQSEL RE+  L   +Q+E                  
Sbjct: 426 EEVKANIEKAASEVKKLKIIAGSLQSELGRERQDLEETKQKES----------------- 468

Query: 620 SEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGAS 679
               L +  +K+A E+ VE  K+L+ A +EA+ AK+LA A+ +EL  AKE +EQAK G S
Sbjct: 469 --TGLARTNDKDAGEELVETAKKLEQATKEAEDAKALATASRDELRMAKELSEQAKRGMS 526

Query: 680 TIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDV-DSPTGVTLSLEEYYELS 738
           TIESRL  A+KE+EAARASEKLALAAIKALQE+ES+QR +++ +SP  + +S+EEYYELS
Sbjct: 527 TIESRLVEAKKEMEAARASEKLALAAIKALQETESSQRFEEINNSPRSIIISVEEYYELS 586

Query: 739 KRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAK 798
           K+A E+EE+AN R+   +SQIEVAK  E R LE+LEEVN+E++ RK  LK A  KAEKA+
Sbjct: 587 KQALESEEEANTRLSEIVSQIEVAKEEESRILEKLEEVNREMSVRKAELKEANGKAEKAR 646

Query: 799 EGKLGIEQELRKWRAEHEQRRKAGESGQGVNSTKIPTPSLEEKKDSKKYDRMSSAAAVPN 858
           +GKLG+EQELRKWR+E+ +RR    + +G    K PT S  E ++ +     S + A   
Sbjct: 647 DGKLGMEQELRKWRSENGKRR----TDEGREPEKSPTRSSTEGRNKENGFGQSKSFAFGE 702

Query: 859 MTSPKASMQGSNTETES--SPEAKGPKKKKKSLFPRLFMFLARRRSHASK 906
             S   +  GS T   +  +PE K  KKKK SLFP++FMFL+R++SH+ K
Sbjct: 703 QGSSSNNTGGSTTTNNNNLTPETK-KKKKKLSLFPKVFMFLSRKKSHSHK 751

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C638|WEL2_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 2 OS=Arabidopsis thaliana GN=WEL2 PE=2 SV=1

 Score =  541 bits (1394), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 359/733 (48%), Positives = 495/733 (67%), Gaps = 68/733 (9%)

Query: 178 DSPKPGDSPKYVLNSPKHV-LDS--PKSGDSPKYVLNSP---KHLVNSPKHVFGSPKQFG 231
           +SPK   +P+ ++N      LDS   +  +  K +  SP   + L  S   V GSP+ F 
Sbjct: 77  ESPKVYIAPRVMINHQDSFSLDSRNDEYIEDVKILPGSPGGIQDLGLSRLKVPGSPRAFV 136

Query: 232 SPRYGISSPKLAKQGEMKRGLIDTTAPFESVKEVVSKFGGIVDWKAHRMQTVERRKYVEQ 291
            PR    SP+          LIDT APFESVKE VSKFGGI DWKAH++QT+ERRK V+Q
Sbjct: 137 HPRSS-GSPRFV--SPTSPVLIDTAAPFESVKEAVSKFGGITDWKAHKIQTIERRKTVDQ 193

Query: 292 ELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSEL 351
           ELE+  E+MP+Y+K++  AE AK+QV+ EL++T+ +VEELKL LE+A+ EE QAKQDS+L
Sbjct: 194 ELEKIQEDMPDYKKQAVVAEEAKHQVVMELERTRNVVEELKLELEKAEKEEQQAKQDSDL 253

Query: 352 AKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKD 411
           AKLRVEEMEQGIA + SVAA++QLEVAKARH++AVSEL ++++E+E +  +Y SL+TEKD
Sbjct: 254 AKLRVEEMEQGIAGEVSVAAKSQLEVAKARHLSAVSELGTIREEIEMVSNEYESLLTEKD 313

Query: 412 IAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSH 471
           +A KKAE+++  +K+VEK +E LT+E+IATK+ LE AHA HLEA+E+++ AAMARDQD +
Sbjct: 314 LAAKKAEDSVLKAKDVEKQMEGLTMEVIATKQLLELAHATHLEAQEKKLDAAMARDQDVY 373

Query: 472 LWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEG 531
             EKELK  E+E+++  Q I +A D+++KL TASAL  DL+AE++AY +S + + +N   
Sbjct: 374 NQEKELKMVEDEIKRFRQDIDAADDVKTKLKTASALQQDLRAEIAAYKDSNMGKRNN--- 430

Query: 532 HSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREK 591
                         +DIQAAV SA+KELEEV  NIEKA +EV  LK+   SLQSEL REK
Sbjct: 431 --------------SDIQAAVDSARKELEEVISNIEKANSEVKTLKIIVGSLQSELAREK 476

Query: 592 SALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEAD 651
             L+  RQR                           +E    EK  E+ K+LQ A++EA+
Sbjct: 477 HDLSETRQRN--------------------------REDTREEKCTEIAKKLQEASREAE 510

Query: 652 QAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQE 711
           +AKSLA AA EEL KAKEE+++AK G S +E +L  ++KE+EA+RASEKLALAAIKALQE
Sbjct: 511 EAKSLAIAAREELRKAKEESDEAKTGLSAVERQLMESKKEMEASRASEKLALAAIKALQE 570

Query: 712 SESAQRTDD-VDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSL 770
           +E A + +D   SP  + +S+EEYYELSK+AHE EE AN ++   +S+IEVAK  E R L
Sbjct: 571 TEYANKIEDISSSPKSIIISVEEYYELSKQAHEVEEAANRKLAEIVSKIEVAKEEESRIL 630

Query: 771 ERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRRKAGESGQGVNS 830
           E LEEV++E A RK  LK AM K EKA++GK+G++ ELRKWR+++  R   G + + ++ 
Sbjct: 631 ENLEEVSRETAIRKVELKEAMTKVEKARDGKVGMDHELRKWRSDNGNRSPEGGNKENLSK 690

Query: 831 TKIPTPSLEEKKDSKKYDRMSSAAAVPNMTSPKASMQGSNTETESSPEAKGPKKKKK-SL 889
           +K    S   +  +  +   +S++ V    +P+AS   SN     +PE +  KKKK+ SL
Sbjct: 691 SK----SALHQPTTFTFGEQASSSNV----TPQAS--SSNV----TPETETKKKKKRFSL 736

Query: 890 FPRLFMFLARRRS 902
            P++FMFL+R++S
Sbjct: 737 LPKVFMFLSRKKS 749

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVQ4|Y5586_ARATH WEB family protein At5g55860 OS=Arabidopsis thaliana GN=At5g55860 PE=2 SV=1

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 166/582 (28%), Positives = 281/582 (48%), Gaps = 45/582 (7%)

Query: 251 GLIDTTAPFESVKEVVSKFGGIVD------WKAHRMQTVERRKYVEQELERSHEEMPEYR 304
           G IDT+APF+SVK+ V+ FG          ++    Q+ E+    + EL  + +E+ + +
Sbjct: 20  GEIDTSAPFQSVKDAVNLFGEAAFSAEKPVFRKPNPQSAEKVLVKQTELHLAQKELNKLK 79

Query: 305 KRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIA 364
           ++ + AE  + Q L EL+ +KR V+EL   LE        A + +E AK  +EE + G  
Sbjct: 80  EQLKNAETIREQALSELEWSKRTVDELTRKLEAVNESRDSANKATEAAKSLIEEAKPG-- 137

Query: 365 DDASVAARAQLEVAKARHVAAVS-ELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISA 423
            + SVA+ +  +         V  EL + K E+  +R+    ++  K +A+ K EEA   
Sbjct: 138 -NVSVASSSDAQTRDMEEYGEVCKELDTAKQELRKIRQVSNEILETKTVALSKVEEAKKV 196

Query: 424 SKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEE 483
           SK   + +E L  E+ A  ES+E          + ++  + AR + S ++      AE+E
Sbjct: 197 SKVHSEKIELLRKEIAAVNESVE----------QTKLACSQARKEQSEIF------AEKE 240

Query: 484 LQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERK 543
           +Q+        K  ++ ++ ++   L LK E       KL+ +  E   +  E++E +++
Sbjct: 241 IQQ--------KSYKAGMEESAKKSLALKNEFDPEFAKKLEVQLTE---TYNEIDELQKQ 289

Query: 544 THT----DIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQ 599
             T    DI + V     EL E K   EK   E   L+    SL++EL+  K     +  
Sbjct: 290 METAKASDIDS-VNGVSLELNEAKGLFEKLVEEEKSLQELVESLKAELKNVKMEHDEVEA 348

Query: 600 REGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQA 659
           +E         L  +L R++SE+     +E +A+    ++   +   + E + A+  A+ 
Sbjct: 349 KEAEIESVAGDLHLKLSRSKSELEQCVTEESKAKAALEDMMLTINQISSETEAARREAEG 408

Query: 660 AGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTD 719
              +  +  +EAE A       E  L  A  E E A+A+E  AL  IK++ E  +A R  
Sbjct: 409 MRNKAKELMKEAESAHLALEDSELHLRVALDEAEEAKAAETKALEQIKSMSEKTNAARNS 468

Query: 720 DVDSPTG--VTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVN 777
                    +TLS EE+  LSKRA   ++ A M+V AA++Q+E  +ASE  +L++LE   
Sbjct: 469 TSSESGSQSITLSQEEFKSLSKRAEVFDKLAEMKVAAALAQVEAVRASENETLKKLETTQ 528

Query: 778 KEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRR 819
           +EI   K A + A++KA  A   K  +E ELR+WR E +Q++
Sbjct: 529 EEIKKLKTATEEALKKAAMADAAKKAVEGELRRWR-ERDQKK 569

Arabidopsis thaliana (taxid: 3702)

>sp|F4ISY0|Y2837_ARATH WEB family protein At2g38370 OS=Arabidopsis thaliana GN=At2g38370 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 164/331 (49%), Gaps = 37/331 (11%)

Query: 501 LDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELE 560
           L+   A +L L+    AY E  L+EE +               +H      V    K+L 
Sbjct: 96  LEATKATVLKLQQRNEAYEEDTLREEVD---------------SHIKPAGVVL---KDLS 137

Query: 561 EVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRS 620
           + K+N+ K    +  ++ +   L+++L  E++AL   R+R    S+ V SLE E  R R 
Sbjct: 138 QAKMNLCK----IASIRESVEQLKNKLNEERAALEKTRERLMEKSLKVFSLEEEEVRVRF 193

Query: 621 EIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGAST 680
                  KE +  EK + +  ++Q  +++A + K   + A  E+ KA  E E  +    T
Sbjct: 194 ------AKEGQTGEKDLGMLNEVQRLSRQAQEVKKTGENAELEVVKAMAETESTRDKIRT 247

Query: 681 IESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKR 740
            + RL AARK        E    A   A+ E E+   + +V     VT+S EEY  L++ 
Sbjct: 248 AKIRLVAARK------MKEAAREAEAVAIAEIEAVTGSMNVGKAEAVTISAEEYSVLARS 301

Query: 741 AHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEG 800
           A +AEE+A  RV  A+S++E A  S+   L++++E  +EI T K  L+ A+E+ + A   
Sbjct: 302 ARDAEEEARKRVEDAMSRVEEANVSKKDVLKKVDEAAQEIETSKRVLEEAVERVDAANAS 361

Query: 801 KLGIEQELRKWRAEHEQRRKAGESGQGVNST 831
           K+  E+ LRKWR+E+ QRR+   S   VN+T
Sbjct: 362 KIEAEEALRKWRSENGQRRRLSSS---VNNT 389

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWW5|Y1215_ARATH WEB family protein At1g12150 OS=Arabidopsis thaliana GN=At1g12150 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 136/583 (23%), Positives = 259/583 (44%), Gaps = 76/583 (13%)

Query: 248 MKRGLIDTTAPFESVKEVVSKFGGIVDWKAHRMQTVERRKYV--------EQELERSHEE 299
           M+ G IDT APF+SVK  VS FG +      + ++  RR  +        E +L   H+E
Sbjct: 16  MEVGEIDTRAPFQSVKAAVSLFGEVA---VSKQRSTPRRSRLSSESVCDKETQLMLVHKE 72

Query: 300 MPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEM 359
             + +++ + AE  +++ L +L + K+ +E+L   LE     +  A    E  + R E++
Sbjct: 73  FMKIKQKLDNAESTRSRALDDLSKAKKTMEDLSNKLETVNKSKQSAIDTKETVQQREEQL 132

Query: 360 EQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEE 419
           E       S     +L+VA+ ++++   EL + K ++  +R+ + S +  K  A+ +A E
Sbjct: 133 EHDKC-HGSPPHHHELDVAREQYISTTVELDAAKQQLNKIRQSFDSAMDFKATALNQAAE 191

Query: 420 AISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQ 479
           A  A +     V EL+ E+   K+++     A  +  ++       +D     +   +++
Sbjct: 192 AQRALQVNSAKVNELSKEISDMKDAIHQLKLAAAQNLQEHANIVKEKDDLRECYRTAVEE 251

Query: 480 AEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEE 539
           AE++L  L +                    + + ELS  +E+KL E ++E       L E
Sbjct: 252 AEKKLLVLRK--------------------EYEPELSRTLEAKLLETTSE----IEVLRE 287

Query: 540 PERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQ 599
             +K H      V     EL E  + +++A  +   L+    SL+ ELE           
Sbjct: 288 EMKKAHESEMNTVKIITNELNEATMRLQEAADDECSLRSLVNSLRMELE----------- 336

Query: 600 REGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQ----------E 649
                         +L R R E     +++KEA    +E  K+L+   Q          E
Sbjct: 337 --------------DLRREREE-----LQQKEAERLEIEETKKLEALKQESLKLEQMKTE 377

Query: 650 ADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKAL 709
           A +A++ A     ++   K+E E A   A   E RL    +E+E A+++E+     +K +
Sbjct: 378 AIEARNEAANMNRKIESLKKETEAAMIAAEEAEKRLELVIREVEEAKSAEEKVREEMKMI 437

Query: 710 QESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRS 769
            + + +++ D+  S + + ++++E+  L + A E E     ++    +++E        +
Sbjct: 438 SQKQESKKQDEESSGSKIKITIQEFESLKRGAGETEAAIEKKLATIAAELEEINKRRAEA 497

Query: 770 LERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWR 812
             +LE   K I   K+A ++A + AE A+  K  +E EL++WR
Sbjct: 498 DNKLEANLKAIEEMKQATELAQKSAESAEAAKRMVESELQRWR 540

Arabidopsis thaliana (taxid: 3702)

>sp|O23564|Y4721_ARATH Putative WEB family protein At4g17210 OS=Arabidopsis thaliana GN=At4g17210 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 112/234 (47%), Gaps = 6/234 (2%)

Query: 583 LQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEARE----KTVE 638
           L  EL+  KSA+  I   E      V SL  ELD  + E   ++ KEKE +E    + VE
Sbjct: 292 LSGELKEAKSAMQEIYDEESSYKSLVGSLTVELDGVQRENRELKGKEKERQEAEEGEWVE 351

Query: 639 LPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARAS 698
             +++    +EA++ +  A+     + + + EA            +L    + +E A+ +
Sbjct: 352 ASRKVDEIMREAEKTRKEAEEMRMNVDELRREAAAKHMVMGEAVKQLEIVGRAVEKAKTA 411

Query: 699 EKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQ 758
           EK A+  +K L E + +   D+ D    + +SL+EY EL  +  E+E     +     +Q
Sbjct: 412 EKRAVEDMKVLTEKKESLTHDEPDKK--IRISLKEYEELRGKHEESERMVQFKAKTVAAQ 469

Query: 759 IEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWR 812
           +E    S +    +LEE  KE+   K A+  A+ KAE A+E    ++ ELRKW+
Sbjct: 470 LEEINESRIEGERKLEEKIKEMEELKAAIDGALRKAEIAEEAHSIVDAELRKWK 523

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYL6|Y3270_ARATH WEB family protein At3g56270 OS=Arabidopsis thaliana GN=At3g56270 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 162/379 (42%), Gaps = 75/379 (19%)

Query: 474 EKELKQAEE---ELQK-LTQQILSAKDLRSKLDTASALLLDLKAELSA----------YM 519
           E ++K+ EE   EL+K L  + L   DL   L +   +  DLK +L            ++
Sbjct: 72  EFDIKRMEEQTVELEKDLIMKELETLDLLEALGSTKRIFEDLKWQLQQQALRCKETPQHL 131

Query: 520 ESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVA 579
            S  KE  +E  H N  L+ P+  T             E+++  +N+ K   ++  +   
Sbjct: 132 RSHSKEMVDEHCHRNP-LKSPDLMTM------------EMKQAGMNLCKTMDDLALIHSY 178

Query: 580 ATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVEL 639
           A SL  + + EK  L             VASL  EL+  + + A     ++  R  T  L
Sbjct: 179 AESLNMKTKEEKDVLG------------VASLAEELNSLKFKPA---GPDQVERFNTENL 223

Query: 640 PKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASE 699
           P   Q      +Q K + +      HK      Q+K    T + RL AARK  EAARA+E
Sbjct: 224 PVNPQ-----CEQIKMVVETYDTAFHK------QSKTCPRTADMRLVAARKMEEAARAAE 272

Query: 700 KLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQI 759
            LALA +  L    S++R  D      +       + L+ +A     Q N  +   +S+I
Sbjct: 273 ALALAEMTIL----SSRRNQD-----ALCFPKTPCFPLTLKA-----QMNKELSTNVSRI 318

Query: 760 EVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRR 819
           E+        L +LEE N+E+   K+AL+VA+ + E A   +L  E+  R+W  E  + +
Sbjct: 319 EI--------LRKLEEANEEVKQSKQALEVALNRVEIASVKQLEAEEAFRQWNIESWKDQ 370

Query: 820 KAGESGQGVNSTKIPTPSL 838
           KA  + + +     P  S 
Sbjct: 371 KAVGAKRSMKRESFPQRSF 389

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	910
255538314	879	Paramyosin, putative [Ricinus communis]	0.943	0.977	0.640	0.0
225458603	844	PREDICTED: protein WEAK CHLOROPLAST MOVE	0.810	0.874	0.736	0.0
357465505	968	hypothetical protein MTR_3g101660 [Medic	0.736	0.692	0.725	0.0
224136764	672	predicted protein [Populus trichocarpa]	0.717	0.971	0.728	0.0
449447241	968	PREDICTED: protein WEAK CHLOROPLAST MOVE	0.984	0.925	0.586	0.0
449517778	768	PREDICTED: protein WEAK CHLOROPLAST MOVE	0.817	0.968	0.681	0.0
356518092	953	PREDICTED: uncharacterized protein LOC10	0.721	0.689	0.725	0.0
356509736	973	PREDICTED: uncharacterized protein LOC10	0.719	0.673	0.727	0.0
224067264	607	predicted protein [Populus trichocarpa]	0.664	0.996	0.771	0.0
297822189	794	hypothetical protein ARALYDRAFT_481517 [	0.735	0.842	0.700	0.0

>gi|255538314|ref|XP_002510222.1| Paramyosin, putative [Ricinus communis] gi|223550923|gb|EEF52409.1| Paramyosin, putative [Ricinus communis]

 Score =  990 bits (2560), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/924 (64%), Positives = 696/924 (75%), Gaps = 65/924 (7%)

Query: 1   MEDVKIAEEMPPPESTLSPKADNGSSSELPEDPVTNGKVSNE--LSNMETSKPKPVEDTA 58
           MEDV++ E  PP ES+ S +  N S+       V NGK+ ++  L  ME S    +ED  
Sbjct: 1   MEDVEVVEVKPPSESSSSAQISNHSNGVDSISKVANGKLESDRKLPTMENSNSATIEDVF 60

Query: 59  DVPVGGQDEVLSADNSVSNSAIAIDES---------ETDHRDTVMEDSKTEATKDNPNGK 109
           + PV GQ + L A+NS  +  +  D S         E +      E SK EA +D+ NG+
Sbjct: 61  NNPVLGQGQSLLAENSAQSQLLPTDNSVPTSTVDLLELNSERKAKEGSKNEAIEDHSNGQ 120

Query: 110 QSQDDGSVIDSHVHTDNSDIPSVSSPQVHDSRDDQRIEPSDKLALPHTELASIAVRAPGT 169
           Q Q+           + +DIPS             R   SD L    T           +
Sbjct: 121 QPQE---------KIETTDIPS------------NRQNSSDVLQSQDT----------YS 149

Query: 170 VDSPKHVLDSPKPG-DSPKYVLNSPKHVLDSPK-----SGDSPKYVLNSPKHLVNSPKHV 223
           +D P+  +D   P   SPK  L S +  LD P+       D P     SP+    +P   
Sbjct: 150 IDRPRIRIDDIIPVVSSPKVSLQSSE--LDLPQVKVRVQSDKPASA--SPQ----TPVAK 201

Query: 224 FGSPKQFGSPRYGISSPKLAKQGEMKRGLIDTTAPFESVKEVVSKFGGIVDWKAHRMQTV 283
             SP   G+P    +S K +KQ ++ RGLIDTTAPFESVKE VSKFGGIVDWKAH++QTV
Sbjct: 202 LSSP-DGGTP-LSFNSAKDSKQVDVSRGLIDTTAPFESVKEAVSKFGGIVDWKAHKIQTV 259

Query: 284 ERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEH 343
           ERRK VE ELE+  EEMPEYR++SE AE AK Q+LKELD TKRL+EELKLNLERAQTEEH
Sbjct: 260 ERRKLVEHELEKVQEEMPEYRRQSEDAEHAKVQILKELDSTKRLIEELKLNLERAQTEEH 319

Query: 344 QAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDY 403
           QAKQDSELA+LRVEE+EQGIAD+ASVAA+AQLEVAKARH AA+SELKSV DE+++LRK+Y
Sbjct: 320 QAKQDSELARLRVEELEQGIADEASVAAKAQLEVAKARHTAAISELKSVSDELQTLRKEY 379

Query: 404 ASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAA 463
           ASL+ EKD A KKAEEA+SAS+EVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAA
Sbjct: 380 ASLIAEKDEASKKAEEAVSASREVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAA 439

Query: 464 MARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKL 523
           MAR+QDS  WEKELKQAEEELQ+L QQILSAKDL+ KL+TAS LLLDLKAEL+AYMESKL
Sbjct: 440 MAREQDSLYWEKELKQAEEELQRLNQQILSAKDLKLKLETASNLLLDLKAELAAYMESKL 499

Query: 524 KEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSL 583
           K+ S  EG++NGE +E ERK+HT+IQ AVASAKKELEEVKLNI+KAT EVNCLKVAATSL
Sbjct: 500 KDIS--EGNTNGEQQEMERKSHTEIQVAVASAKKELEEVKLNIQKATDEVNCLKVAATSL 557

Query: 584 QSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQL 643
           Q ELE+EKS+LA +RQREGMASVAV SLEAELD TRSEIALVQMKEKEA+EK VELPK+L
Sbjct: 558 QLELEKEKSSLATVRQREGMASVAVGSLEAELDNTRSEIALVQMKEKEAKEKMVELPKKL 617

Query: 644 QVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLAL 703
           Q AAQ AD+AK LAQ A EEL KAKEEAEQA+A AST+ESRL AA+KEIEAA+ASEKLAL
Sbjct: 618 QQAAQAADEAKQLAQVAREELRKAKEEAEQARAAASTMESRLLAAQKEIEAAKASEKLAL 677

Query: 704 AAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAK 763
           AAIKALQESESAQ T D+DS  G+TLSLEEYYELSKRAH+AEEQANMRV AAISQIE+AK
Sbjct: 678 AAIKALQESESAQSTTDIDSLAGITLSLEEYYELSKRAHDAEEQANMRVAAAISQIELAK 737

Query: 764 ASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRRKAGE 823
            SELR+ E+LE+VN+E+A R+EALK+AM+KAEKAKEGKLG+EQELR+WRAEHEQRRKAGE
Sbjct: 738 ESELRTAEKLEDVNREMAARREALKIAMDKAEKAKEGKLGVEQELRRWRAEHEQRRKAGE 797

Query: 824 SGQGVNSTKIPT-PSLEEKKDSKKYDRMSSAAAVPNMTSPKASMQGSNTETESSPEAKGP 882
           S QG     +PT  S E + +SK ++++  A+A  N+ SPKA   G++TETESSP+ K  
Sbjct: 798 SAQG---AAVPTRTSFEGQDESKNFEQVPDASA-QNIASPKAYAHGTSTETESSPDMKVH 853

Query: 883 KKKKKSLFPRLFMFLARRRSHASK 906
           KKKKKS FPR  MFLAR+R+HAS+
Sbjct: 854 KKKKKSFFPRFLMFLARKRTHASR 877

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458603|ref|XP_002282770.1| PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Vitis vinifera]

 Score =  962 bits (2487), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/758 (73%), Positives = 636/758 (83%), Gaps = 20/758 (2%)

Query: 167 PGTV--DSPKHVL--DSPKPGDSPKYVLNSPKHVLDSPKSGDSPKYVLNSPKHLVN---- 218
           PGTV  DS   V+  D P+  D   +V N+  HV D   S  SP+   ++    V     
Sbjct: 91  PGTVKGDSETGVVTSDGPQSCDG-NFVTNAHVHV-DVIPSASSPEIRDSTGDDHVGQSDE 148

Query: 219 -SPKHVFGSPKQFGSPRYGISSPKLAKQGEMKRGLIDTTAPFESVKEVVSKFGGIVDWKA 277
            S   V  S    G+P    S+ K  KQ ++ R  +DT APFESVKE VSKFGGIVDWKA
Sbjct: 149 LSLPQVMFSNAAVGTPE-PFSASKHVKQFDVTRAHVDTAAPFESVKEAVSKFGGIVDWKA 207

Query: 278 HRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLER 337
           HR+QTVERRK VE+ELE++ E++PEYRK++E AE AK Q LKELD TKRL+EELKLNLER
Sbjct: 208 HRIQTVERRKLVERELEKAREDIPEYRKQAEDAEDAKTQALKELDSTKRLIEELKLNLER 267

Query: 338 AQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVE 397
           AQTEEHQAKQDSELAKLRVEEMEQGIAD+ASVAA+AQLEVAKARH AAV++LK+VKDE+E
Sbjct: 268 AQTEEHQAKQDSELAKLRVEEMEQGIADEASVAAKAQLEVAKARHAAAVADLKAVKDELE 327

Query: 398 SLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEE 457
           +LRK+YASLVTEKD+AVK+AE+A+SASKE+EKTVEELTIELIATKE+LESAHA HLEAEE
Sbjct: 328 ALRKEYASLVTEKDVAVKRAEQAVSASKEIEKTVEELTIELIATKEALESAHATHLEAEE 387

Query: 458 QRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSA 517
           QRIG AM ++QDS  WEKELKQAEEELQKL +Q++S KDL+SKLDTASALLLDLKAEL+A
Sbjct: 388 QRIGMAMVKEQDSLNWEKELKQAEEELQKLNEQVVSRKDLKSKLDTASALLLDLKAELAA 447

Query: 518 YMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLK 577
           YMESKLK+E+NEE H  GELEEPE+KTHTD+QAA+ASAKKELEEVKLNIEKAT EVN LK
Sbjct: 448 YMESKLKQETNEE-HLQGELEEPEKKTHTDLQAAIASAKKELEEVKLNIEKATTEVNYLK 506

Query: 578 VAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTV 637
           VAATSLQSEL++EKSALA IRQREG+ASVA ASLEAEL+ T+SEIALVQMKE+EAREK  
Sbjct: 507 VAATSLQSELQKEKSALATIRQREGIASVAAASLEAELNSTKSEIALVQMKEREAREKMA 566

Query: 638 ELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARA 697
           ELPKQLQ AAQEADQAKSLAQ A EEL KAKEEAEQAKAGAST+ESRL AA+KEIEAA+A
Sbjct: 567 ELPKQLQQAAQEADQAKSLAQMAWEELRKAKEEAEQAKAGASTMESRLLAAQKEIEAAKA 626

Query: 698 SEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAIS 757
           SEKLALAAIKALQESESA+ T+D DSPTGVTL+LEEYYELSKRAHEAEEQANMRVVAA+S
Sbjct: 627 SEKLALAAIKALQESESARDTNDEDSPTGVTLALEEYYELSKRAHEAEEQANMRVVAAMS 686

Query: 758 QIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQ 817
           QIEVAK SELRSL++LE VN+E+ATRKEAL  A+EKAEKAKEGKLG+EQELRKWRAEHEQ
Sbjct: 687 QIEVAKESELRSLDQLEAVNQELATRKEALNHALEKAEKAKEGKLGVEQELRKWRAEHEQ 746

Query: 818 RRKAGESGQGV-NSTKIPTPS-----LEEKKDSKKYDRM-SSAAAVPNMTSPKASMQGSN 870
           RRKA ESGQGV N  + P  S     LEE+K+SK +DR    AAA+    SPK  MQG++
Sbjct: 747 RRKASESGQGVVNPIRSPRKSFEDRSLEERKESKNFDRGPEPAAAIHYRASPKPYMQGNS 806

Query: 871 TETESSPEAKGPKKKKKSLFPRLFMFLARRRSHASKSS 908
           TETESSPE K  KKKK+S+FPR FMF  RR+SH+SKS+
Sbjct: 807 TETESSPETKSMKKKKRSMFPRFFMFFTRRKSHSSKST 844

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465505|ref|XP_003603037.1| hypothetical protein MTR_3g101660 [Medicago truncatula] gi|355492085|gb|AES73288.1| hypothetical protein MTR_3g101660 [Medicago truncatula]

 Score =  930 bits (2404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/675 (72%), Positives = 587/675 (86%), Gaps = 5/675 (0%)

Query: 236 GISSPKLAKQGEMKRGLIDTTAPFESVKEVVSKFGGIVDWKAHRMQTVERRKYVEQELER 295
            + SP   KQ ++KRGLIDTT PFESVKE VSKFGGIVDWKAHR+QTVERR  VEQEL++
Sbjct: 274 AVDSPPQIKQVDVKRGLIDTTPPFESVKEAVSKFGGIVDWKAHRIQTVERRNLVEQELDK 333

Query: 296 SHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLR 355
           ++EE+PEYRK++E AE  KNQVLKELD TKRL+EELKLNLERAQTEE QA+QDSELAKLR
Sbjct: 334 ANEEIPEYRKQAETAEQTKNQVLKELDSTKRLIEELKLNLERAQTEEQQARQDSELAKLR 393

Query: 356 VEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVK 415
           VEEMEQGIAD++SVAA+AQLEVAKAR+ AA+++L +VK+E+++LRK+YASLVT++D A+K
Sbjct: 394 VEEMEQGIADESSVAAKAQLEVAKARYTAAITDLAAVKEELDALRKEYASLVTDRDEAIK 453

Query: 416 KAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEK 475
           KAEEA++ASKEVEK+VE+LTIELIATKESLE+AHAAHLEAEEQRIG  MARDQDS  WEK
Sbjct: 454 KAEEAVTASKEVEKSVEDLTIELIATKESLETAHAAHLEAEEQRIGTVMARDQDSLNWEK 513

Query: 476 ELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNG 535
           ELKQAEEELQ++ +Q+LSAKDL+SKL+ AS LLLDLKA+L+ YMESKLK+E ++E    G
Sbjct: 514 ELKQAEEELQRINEQMLSAKDLKSKLEAASGLLLDLKAKLTVYMESKLKQEGDDELSQGG 573

Query: 536 ELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALA 595
           + EEPE+KTHTDIQAAV SA+KELEEVKLNIEKA AEV+CLK+AATSL+SELE+EKS+LA
Sbjct: 574 Q-EEPEKKTHTDIQAAVESARKELEEVKLNIEKANAEVSCLKLAATSLKSELEQEKSSLA 632

Query: 596 AIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKS 655
           +IRQREGMAS+AVASLEAELD+TRSEIALVQMKEKEA+E+  ELPK+LQ+ A+EA+QA  
Sbjct: 633 SIRQREGMASIAVASLEAELDKTRSEIALVQMKEKEAKEQMTELPKKLQLTAEEANQANL 692

Query: 656 LAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESA 715
           LAQAA EEL K K EAEQAKAG ST+ESRL AA+KEIEAA+ASEKLA+AAIKALQESE+ 
Sbjct: 693 LAQAAREELQKVKAEAEQAKAGVSTLESRLLAAQKEIEAAKASEKLAIAAIKALQESEAN 752

Query: 716 QRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEE 775
           +  ++VD  +GVTLSL+EYYELSKRAHEAEE+AN R+ AA S++EVAK SEL+S E+L+E
Sbjct: 753 RSKNEVDPSSGVTLSLDEYYELSKRAHEAEERANTRIEAANSEVEVAKESELKSFEKLDE 812

Query: 776 VNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRRKAGESGQGV-NSTKIP 834
           VN+EIA R+E+LK+AMEKAEKAKEGKLG+EQELR+WRAE+EQRRKAGESGQGV N  K P
Sbjct: 813 VNREIAARRESLKMAMEKAEKAKEGKLGVEQELRRWRAENEQRRKAGESGQGVLNQNKSP 872

Query: 835 TPSLEEKKDSKKYDRMSSAAAVP--NMTSPKASMQGSNTETESSPEAKGPKKKKKSLFPR 892
             S E  K++  +DR S  A  P   ++SPK  M     E  SSPE+K  KKKKKSLFPR
Sbjct: 873 RASFEGSKEANNFDR-SQYATNPAQYLSSPKTYMHAEKDEGGSSPESKHGKKKKKSLFPR 931

Query: 893 LFMFLARRRSHASKS 907
           + MF ARR++H++KS
Sbjct: 932 VMMFFARRKTHSNKS 946

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136764|ref|XP_002326939.1| predicted protein [Populus trichocarpa] gi|222835254|gb|EEE73689.1| predicted protein [Populus trichocarpa]

 Score =  925 bits (2391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/697 (72%), Positives = 573/697 (82%), Gaps = 44/697 (6%)

Query: 212 SPKHLVNSPKHVFGSPKQFGSPRYGISSPKLAKQGEMKRGLIDTTAPFESVKEVVSKFGG 271
           SP+  V SP   F +PK   SPR    SP+L KQ ++ RGLIDT APFESVKE VSKFGG
Sbjct: 18  SPRAKVASP--AFRTPKSSDSPRL---SPQLVKQADINRGLIDTAAPFESVKEAVSKFGG 72

Query: 272 IVDWKAHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEEL 331
           IVDWKAHR+QTVERRK V+QELE    EMPEY+KRSEAAE  K QVLKELD TKRL+EEL
Sbjct: 73  IVDWKAHRIQTVERRKLVDQELETVQVEMPEYKKRSEAAEEEKTQVLKELDNTKRLIEEL 132

Query: 332 KLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKS 391
           KLNLERAQTEEHQAKQDSEL KLRVEEMEQGIAD+ASVAA+AQLEVAKARH AAVSELK+
Sbjct: 133 KLNLERAQTEEHQAKQDSELVKLRVEEMEQGIADEASVAAKAQLEVAKARHSAAVSELKA 192

Query: 392 VKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAA 451
           V DE+E+L K+Y SLV+EKD AVKKAE A+SASKEVEKTVEELTIELI+TKESLESAHAA
Sbjct: 193 VNDELEALHKEYTSLVSEKDEAVKKAEVAVSASKEVEKTVEELTIELISTKESLESAHAA 252

Query: 452 HLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDL 511
           HLEAEEQRIGA MA++QDS  WEKELKQAEEELQ+L QQILSAKDL+SKLDTASALL+DL
Sbjct: 253 HLEAEEQRIGAIMAKEQDSLHWEKELKQAEEELQRLNQQILSAKDLKSKLDTASALLVDL 312

Query: 512 KAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATA 571
           K EL+AYMESK+K+E+  EG    E EEPE+KTHT+IQA VASAKKELEEVKLNIEKATA
Sbjct: 313 KTELAAYMESKIKDET--EGEPRAEQEEPEKKTHTNIQATVASAKKELEEVKLNIEKATA 370

Query: 572 EVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKE 631
           EVNCLK                                   AELD+TRSE A VQMKEKE
Sbjct: 371 EVNCLK-----------------------------------AELDKTRSETARVQMKEKE 395

Query: 632 AREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKE 691
           AREK +E+PK+LQ AA+ AD+AKSLAQ A EEL KAKEEAEQAKAGAST+ESRL AA+KE
Sbjct: 396 AREKMIEIPKKLQQAAEAADEAKSLAQMAREELRKAKEEAEQAKAGASTMESRLLAAQKE 455

Query: 692 IEAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMR 751
           IEA+RASEKLALAAIKALQESESA  T DVD+PT VTLSLEEYYELSK AHEAEEQAN+R
Sbjct: 456 IEASRASEKLALAAIKALQESESAHSTSDVDTPTSVTLSLEEYYELSKLAHEAEEQANLR 515

Query: 752 VVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKW 811
           V AAISQIEVAK SE R+ E+LE+VN+E++ RKEALK+AM+KAE+AKEGKLG+EQELRKW
Sbjct: 516 VAAAISQIEVAKESESRTAEKLEQVNQEMSARKEALKIAMDKAEQAKEGKLGVEQELRKW 575

Query: 812 RAEHEQRRKAGESGQG-VNSTKIPTPSLEEKKDSKKYDRMSSAAAVPNMTSPKASMQGSN 870
           RAEHEQ+R+A ESGQG  N  K P  S E++K+SK +DR    AAV   +SPK+ + GSN
Sbjct: 576 RAEHEQQRRASESGQGAANPIKTPGASFEDRKESKNFDRAPD-AAVGYASSPKSHVPGSN 634

Query: 871 TETESSPEAKGPKKKKKSLFPRLFMFLARRRSHASKS 907
           TET+SSPE K P+KKKKSLFPRL +FLAR++SHASK+
Sbjct: 635 TETDSSPEVKVPRKKKKSLFPRLLLFLARKKSHASKT 671

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447241|ref|XP_004141377.1| PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Cucumis sativus]

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/979 (58%), Positives = 708/979 (72%), Gaps = 83/979 (8%)

Query: 1   MEDVKIAEEMPPPESTLSPKADNGSSSELPEDPVTNGKVS------NELSN------MET 48
           M+DVK+A       S+L  + D+ S  E P   V NG V       N ++N      +E 
Sbjct: 1   MDDVKLANHTSSSHSSLISQEDSHSLDENPNHLVNNGIVGPSQVLPNSVANGKLEGKIEC 60

Query: 49  SKPKPVEDT--ADVP------------VGG---------QDEVLSADNSVSNSAIAIDES 85
           S P P++ T  ++ P             GG         QDE ++++NS  +S +  D  
Sbjct: 61  S-PSPIDGTVISESPHQISENSVMSAIEGGPSPRDANMRQDEGIASNNSGLSSTVPDDRL 119

Query: 86  ETDHRDTVMEDSKTEATKDNPNGKQSQD-----DGSVID--------------------- 119
           E  +  T+MED +T++ +D  + K+SQ+      GS  D                     
Sbjct: 120 EEQNPTTLMEDPRTQSVEDM-SEKRSQEQSTVHSGSANDVIMPSVISSVEVLPEKCPQEQ 178

Query: 120 SHVHTDNSDIPSVSSPQVHDSRDDQRIEPSDKLALPHTELASIAVRAPGTVDSPKHVLDS 179
           S VH+D+S+   V+ P V  S +D   +   + +  H+E A+I    P  V S   V D 
Sbjct: 179 STVHSDSSN--DVTLPSVISSVEDMPEKLPREQSPIHSEFAAINEVTPSAVSS---VEDM 233

Query: 180 PKPGDSPKYVLNSPKHVLDSPKSGDSPKYVLNSPKHLVNSPKHVF------GSPKQFGSP 233
           P+     ++    P H   +  + D+   VL+S   ++ +   V       G     G  
Sbjct: 234 PEKLSQEQF----PVHNDSATVNDDNTPSVLSSEAVVIQNEGAVQLDRLTEGERVSCGKS 289

Query: 234 RYGISSPKLAKQGEMKRGLIDTTAPFESVKEVVSKFGGIVDWKAHRMQTVERRKYVEQEL 293
              + SP   KQ ++ RGLIDTTAPFESVKE VSKFGGIVDWKAHR+QTVERRK VEQEL
Sbjct: 290 E-SVDSPIDGKQSDINRGLIDTTAPFESVKEAVSKFGGIVDWKAHRIQTVERRKLVEQEL 348

Query: 294 ERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAK 353
           E+  EE+PEYR++SE AE  K +VLKELD TKRL+EELKLNLERAQTEE QA+QDSELAK
Sbjct: 349 EKLQEEIPEYRRQSETAEDEKKKVLKELDSTKRLIEELKLNLERAQTEERQARQDSELAK 408

Query: 354 LRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIA 413
           LRVEEMEQGIA++ASVAA+AQLEVAKARHVAAVSEL+SVK+E+E L K++ASLV +++ A
Sbjct: 409 LRVEEMEQGIAEEASVAAKAQLEVAKARHVAAVSELQSVKEELELLCKEFASLVIDRNAA 468

Query: 414 VKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLW 473
           + KAE+A++ASKEVEK VE+LTIEL+A KESLESAHA+HLEAEEQRIGAAMAR+QDS  W
Sbjct: 469 IAKAEDAVAASKEVEKAVEDLTIELMANKESLESAHASHLEAEEQRIGAAMAREQDSLNW 528

Query: 474 EKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEE-SNEEGH 532
           EKELKQAE+ELQ L  +I+SAKDL+SKLDTAS LL+DLKAEL+AYMESKL+EE  N++G+
Sbjct: 529 EKELKQAEDELQSLNLKIMSAKDLKSKLDTASNLLIDLKAELAAYMESKLEEEPDNQDGN 588

Query: 533 SNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKS 592
           + GE E+PE+KTHTDIQAAVASAK+ELEEVKLNIEKA++E+N LKVAATSL++ELEREKS
Sbjct: 589 TKGEGEDPEKKTHTDIQAAVASAKQELEEVKLNIEKASSEINILKVAATSLKTELEREKS 648

Query: 593 ALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQ 652
           ALA ++QREGMAS+AVASLEAE++RTRSEIALVQMKEKEARE  VE PKQLQ AAQEADQ
Sbjct: 649 ALATLKQREGMASIAVASLEAEVERTRSEIALVQMKEKEAREMMVEFPKQLQQAAQEADQ 708

Query: 653 AKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQES 712
           AKS AQ A EEL K KEEAEQAKAGAST+ESRL AA+KEIEAA+ASE+LALAAIKALQES
Sbjct: 709 AKSAAQVAQEELRKTKEEAEQAKAGASTMESRLLAAQKEIEAAKASERLALAAIKALQES 768

Query: 713 ESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLER 772
           ESA+ T++ DSP GVTLSLEEYYELSK AHEAEEQAN+RV AA+SQIEVAK SE +S+E+
Sbjct: 769 ESARDTNNADSPAGVTLSLEEYYELSKCAHEAEEQANVRVAAALSQIEVAKESESKSVEK 828

Query: 773 LEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRRKAGESGQGV-NST 831
           LEEV +E+ATRKEALK AME+AEKAKEGKLG+EQELRKWRAEHEQRRKAG++  G+ N  
Sbjct: 829 LEEVTQEMATRKEALKTAMERAEKAKEGKLGVEQELRKWRAEHEQRRKAGDTSVGLMNPI 888

Query: 832 KIPTPSLEEKKDSKKYDRMSSAAAV-PNM-TSPKASMQGSNTETESSPEAKGPKKKKKSL 889
             P  S E K +      +S A    P++ TSPK +MQ S T  +S  EAK PKKKK+S 
Sbjct: 889 ASPRASFEGKNEPSNLVSVSDATVTDPSISTSPKGNMQRSFTTLDSFSEAKAPKKKKRSF 948

Query: 890 FPRLFMFLARRRSHASKSS 908
           FPR+ MFLAR+++ ++K+S
Sbjct: 949 FPRILMFLARKKTQSNKTS 967

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517778|ref|XP_004165921.1| PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Cucumis sativus]

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/764 (68%), Positives = 618/764 (80%), Gaps = 20/764 (2%)

Query: 156 HTELASIAVRAPGTVDSPKHVLDSPKPGDSPKY-VLNSPKHVLDSPKSGDSPKYVLNSPK 214
           H+E A+I    P  V S   V D P+     ++ V N P  V D     D+   VL+S  
Sbjct: 13  HSEFAAINEVTPSAVSS---VEDMPEKLSQEQFPVHNDPATVND-----DNTPSVLSSEA 64

Query: 215 HLVNSPKHVF------GSPKQFGSPRYGISSPKLAKQGEMKRGLIDTTAPFESVKEVVSK 268
            ++ +   V       G     G     + SP   KQ ++ RGLIDTTAPFESVKE VSK
Sbjct: 65  VVIQNEGAVQLDRLTEGERVSCGKSE-SVDSPIDGKQSDINRGLIDTTAPFESVKEAVSK 123

Query: 269 FGGIVDWKAHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLV 328
           FGGIVDWKAHR+QTVERRK VEQELE+  EE+PEYR++SE AE  K +VLKELD TKRL+
Sbjct: 124 FGGIVDWKAHRIQTVERRKLVEQELEKLQEEIPEYRRQSETAEDEKKKVLKELDSTKRLI 183

Query: 329 EELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSE 388
           EELKLNLERAQTEE QA+QDSELAKLRVEEMEQGIA++ASVAA+AQLEVAKARHVAAVSE
Sbjct: 184 EELKLNLERAQTEERQARQDSELAKLRVEEMEQGIAEEASVAAKAQLEVAKARHVAAVSE 243

Query: 389 LKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESA 448
           L+SVK+E+E L K++ASLV +++ A+ KAE+A++ASKEVEK VE+LTIEL+A KESLESA
Sbjct: 244 LQSVKEELELLCKEFASLVIDRNAAIAKAEDAVAASKEVEKAVEDLTIELMANKESLESA 303

Query: 449 HAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALL 508
           HA+HLEAEEQRIGAAMAR+QDS  WEKELKQAE+ELQ L  +I+SAKDL+SKLDTAS LL
Sbjct: 304 HASHLEAEEQRIGAAMAREQDSLNWEKELKQAEDELQSLNLKIMSAKDLKSKLDTASNLL 363

Query: 509 LDLKAELSAYMESKLKEE-SNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIE 567
           +DLKAEL+AYMESKL+EE  N++ ++ GE E+PE+KTHTDIQAAVASAK+ELEEVKLNIE
Sbjct: 364 IDLKAELAAYMESKLEEEPDNQDSNTKGEGEDPEKKTHTDIQAAVASAKQELEEVKLNIE 423

Query: 568 KATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQM 627
           KA++E+N LKVAATSL++ELEREKSALA ++QREGMAS+AVASLEAE++RTRSEIALVQM
Sbjct: 424 KASSEINILKVAATSLKTELEREKSALATLKQREGMASIAVASLEAEVERTRSEIALVQM 483

Query: 628 KEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTA 687
           KEKEARE  VE PKQLQ AAQEADQAKS AQ A EEL K KEEAEQAKAGAST+ESRL A
Sbjct: 484 KEKEAREMMVEFPKQLQQAAQEADQAKSAAQVAQEELRKTKEEAEQAKAGASTMESRLLA 543

Query: 688 ARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQ 747
           A+KEIEAA+ASE+LALAAIKALQESESA+ T++ DSP GVTLSLEEYYELSK AHEAEEQ
Sbjct: 544 AQKEIEAAKASERLALAAIKALQESESARDTNNADSPAGVTLSLEEYYELSKCAHEAEEQ 603

Query: 748 ANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQE 807
           AN+RV AA+SQIEVAK SE +S+E+LEEV +E+ATRKEALK AME+AEKAKEGKLG+EQE
Sbjct: 604 ANVRVAAALSQIEVAKESESKSVEKLEEVTQEMATRKEALKTAMERAEKAKEGKLGVEQE 663

Query: 808 LRKWRAEHEQRRKAGESGQGV-NSTKIPTPSLEEKKDSKKYDRMSSAAAV-PNM-TSPKA 864
           LRKWRAEHEQRRKAG++  G+ N    P  S E K +      +S A    P++ TSPK 
Sbjct: 664 LRKWRAEHEQRRKAGDTSVGLMNPIASPRASFEGKNEPSNLVSVSDATVTDPSISTSPKG 723

Query: 865 SMQGSNTETESSPEAKGPKKKKKSLFPRLFMFLARRRSHASKSS 908
           +MQ S T  +S  EAK PKKKK+S FPR+ MFLAR+++ ++K+S
Sbjct: 724 NMQRSFTTLDSFSEAKAPKKKKRSFFPRILMFLARKKTQSNKTS 767

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518092|ref|XP_003527717.1| PREDICTED: uncharacterized protein LOC100786543 [Glycine max]

 Score =  899 bits (2322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/667 (72%), Positives = 566/667 (84%), Gaps = 10/667 (1%)

Query: 243 AKQGEMKRGLIDTTAPFESVKEVVSKFGGIVDWKAHRMQTVERRKYVEQELERSHEEMPE 302
           AK  + KRG IDTTAPFESVKE VSKFGGIVDWKAHR+ TVERR  VEQELE++ E++PE
Sbjct: 294 AKLFDAKRGHIDTTAPFESVKEAVSKFGGIVDWKAHRIHTVERRTLVEQELEKAQEDIPE 353

Query: 303 YRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQG 362
           Y+K++EAAE  K QVLKELD TKRL+EELKLNLERAQTEE QA+QDSELAKLRVEEMEQG
Sbjct: 354 YKKQAEAAEQEKGQVLKELDSTKRLIEELKLNLERAQTEERQARQDSELAKLRVEEMEQG 413

Query: 363 IADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAIS 422
           IAD++SVAA+AQLEVAKAR+ AAVS+L +VK+E+ +L K+YASLVT++D+A+KKAEEA++
Sbjct: 414 IADESSVAAKAQLEVAKARYTAAVSDLIAVKEELAALHKEYASLVTDRDVAIKKAEEAVA 473

Query: 423 ASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEE 482
           ASKEVEK+VE+LT+ELIA KESLE+ HAAHLEAEEQRIG  MARDQDS  WEKELKQAEE
Sbjct: 474 ASKEVEKSVEDLTVELIAAKESLETTHAAHLEAEEQRIGTVMARDQDSLNWEKELKQAEE 533

Query: 483 ELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPER 542
           ELQ+L QQI SAK+L+SKL+TASALL+DLKAEL+AYMESKLK+E        G  EE E+
Sbjct: 534 ELQRLNQQISSAKELKSKLETASALLIDLKAELTAYMESKLKQE--------GGPEESEK 585

Query: 543 KTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREG 602
           KTHTDIQ AVASA+KELEEV LNIEKATAEV  LKVAATSL+SELE+EKS LA+IRQREG
Sbjct: 586 KTHTDIQEAVASARKELEEVNLNIEKATAEVTILKVAATSLKSELEQEKSTLASIRQREG 645

Query: 603 MASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGE 662
           MAS+AVASLEAEL++TRSEIALVQMKEKEA+EK  ELPK+LQ+ A+E ++A  LAQAA E
Sbjct: 646 MASIAVASLEAELEKTRSEIALVQMKEKEAKEKMTELPKKLQLTAEETNEANLLAQAARE 705

Query: 663 ELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVD 722
           EL K K EAEQAKAG ST +SRL AA+KEIEAA+ASE LA+AAIKALQESES +  + VD
Sbjct: 706 ELQKVKAEAEQAKAGVSTFQSRLLAAQKEIEAAKASENLAIAAIKALQESESTRSKNQVD 765

Query: 723 SPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIAT 782
              GVTLSLEEYYELSKRAHEAEE+ANMRV AA S+I+ AK SEL++ E+L+EVN+EIA 
Sbjct: 766 PSNGVTLSLEEYYELSKRAHEAEERANMRVAAANSEIDKAKESELKAFEKLDEVNREIAA 825

Query: 783 RKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRRKAGESGQG-VNSTKIPTPSLEEK 841
           R+E+LK+AMEKAEKAKEGKLG+EQELR WRAE EQRRKA ESGQG VN  K P  S E  
Sbjct: 826 RRESLKLAMEKAEKAKEGKLGVEQELRNWRAESEQRRKASESGQGVVNQGKSPRGSFEGN 885

Query: 842 KDSKKYDRMSSAAAVPN-MTSPKASMQGSNTETESSPEAKGPKKKKKSLFPRLFMFLARR 900
           +    +DR S A    + MTSPKA++Q  N E  SSPE+K  KKKKKS+FPR+ MF ARR
Sbjct: 886 QGVNNFDRTSDAGNPAHFMTSPKANVQADNDEGGSSPESKHGKKKKKSIFPRVLMFFARR 945

Query: 901 RSHASKS 907
           ++H++KS
Sbjct: 946 KTHSTKS 952

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509736|ref|XP_003523602.1| PREDICTED: uncharacterized protein LOC100812902 [Glycine max]

 Score =  897 bits (2317), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/667 (72%), Positives = 569/667 (85%), Gaps = 12/667 (1%)

Query: 243 AKQGEMKRGLIDTTAPFESVKEVVSKFGGIVDWKAHRMQTVERRKYVEQELERSHEEMPE 302
           AK  + KRGLIDTTAPFESVKE VSKFGGIVDWKAHR+ TVERR  VEQELE++ EE+PE
Sbjct: 316 AKLFDAKRGLIDTTAPFESVKEAVSKFGGIVDWKAHRIHTVERRTLVEQELEKAQEEIPE 375

Query: 303 YRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQG 362
           Y+K++E AE  K QVLKELD TKRL+EELKLNLERA TEE QA+QDSELAKLRVEEMEQG
Sbjct: 376 YKKQAETAEQEKGQVLKELDSTKRLIEELKLNLERAHTEERQARQDSELAKLRVEEMEQG 435

Query: 363 IADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAIS 422
           IAD++SVAA+AQLEVAKAR+ AAVS+L +VK+E+E+L K+Y SLVT++D+A+KKAEEA++
Sbjct: 436 IADESSVAAKAQLEVAKARYTAAVSDLIAVKEELEALHKEYTSLVTDRDVAIKKAEEAVT 495

Query: 423 ASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEE 482
           ASKEVEK+VE+LT+ELIA KESLE+ HAAHLEAEEQRIG  MARDQDS  WEKELKQAEE
Sbjct: 496 ASKEVEKSVEDLTVELIAAKESLETTHAAHLEAEEQRIGTVMARDQDSLNWEKELKQAEE 555

Query: 483 ELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPER 542
           ELQ+L QQI SAK+L+SKL+TASALL+DLKAEL+AYMESKLK+E        G  EEPE 
Sbjct: 556 ELQRLNQQISSAKELKSKLETASALLIDLKAELTAYMESKLKQE--------GGPEEPEI 607

Query: 543 KTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREG 602
           KTHTDI+ AVASA KELEEV LNIEKATAE++ LKVAATSL+ ELE+EK+ LA+IRQREG
Sbjct: 608 KTHTDIREAVASAGKELEEVNLNIEKATAEISILKVAATSLKLELEQEKATLASIRQREG 667

Query: 603 MASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGE 662
           MASVAVASLEAEL++TRSEIALVQMKEKEA+EK  ELPK+LQ+ A+E +QA  LAQAA E
Sbjct: 668 MASVAVASLEAELEKTRSEIALVQMKEKEAKEKMTELPKKLQLTAEETNQANLLAQAARE 727

Query: 663 ELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVD 722
           EL K K EAEQAKAG ST+ESRL AA+KEIEAA+ASE LA+AAIKALQESES +  ++VD
Sbjct: 728 ELQKVKAEAEQAKAGVSTLESRLLAAQKEIEAAKASENLAIAAIKALQESESTRSKNEVD 787

Query: 723 SPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIAT 782
              GVTLSLEEYYELSKRAHEAEE+ANMRV AA S+I+  K SEL++ E+L+EVN+EIA 
Sbjct: 788 PSNGVTLSLEEYYELSKRAHEAEERANMRVAAANSEIDKVKESELKAFEKLDEVNREIAA 847

Query: 783 RKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRRKAGESGQGV-NSTKIPTPSLEEK 841
           R+E+LK+AMEKAEKAKEGKLG+EQELRKWRAE EQRRKAGESGQGV N +K P  S E K
Sbjct: 848 RRESLKLAMEKAEKAKEGKLGVEQELRKWRAESEQRRKAGESGQGVINQSKSPRGSFEGK 907

Query: 842 KDSKKYDRMSSAAAVPN-MTSPKASMQGSNTETESSPEAKGPKKKKKSLFPRLFMFLARR 900
            ++  +DR S AA   + +TSPKA+    N E  SSPE+K  KKKKKS+FPR+ MF ARR
Sbjct: 908 ANN--FDRTSDAANPAHYLTSPKANEHADNDEGGSSPESKHGKKKKKSIFPRVLMFFARR 965

Query: 901 RSHASKS 907
           ++H++KS
Sbjct: 966 KTHSTKS 972

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067264|ref|XP_002302437.1| predicted protein [Populus trichocarpa] gi|222844163|gb|EEE81710.1| predicted protein [Populus trichocarpa]

 Score =  880 bits (2273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/609 (77%), Positives = 538/609 (88%), Gaps = 4/609 (0%)

Query: 300 MPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEM 359
           MPEY+KRSEAAE  K QVLKELD TKRL+EELKLNLERAQTEEHQAKQDSELAKLRVEEM
Sbjct: 1   MPEYKKRSEAAEEEKIQVLKELDSTKRLIEELKLNLERAQTEEHQAKQDSELAKLRVEEM 60

Query: 360 EQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEE 419
           EQGIAD+ASVAA+AQLEVAKAR+ AAVSELK+V DEVE+L K+YASLV+EKD AVKKAE+
Sbjct: 61  EQGIADEASVAAKAQLEVAKARYSAAVSELKTVNDEVEALHKEYASLVSEKDEAVKKAED 120

Query: 420 AISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQ 479
           A+SAS+EVEKTVEELTIELIATKESLESAHAAH+EAEEQRIGA MA++QDS  WEKELKQ
Sbjct: 121 AVSASREVEKTVEELTIELIATKESLESAHAAHMEAEEQRIGATMAKEQDSLHWEKELKQ 180

Query: 480 AEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEE 539
           AEEELQ+L QQILSAKDL+SKL+TASALL+DLKAEL+AYMESK KE +  EG    E +E
Sbjct: 181 AEEELQRLNQQILSAKDLKSKLNTASALLVDLKAELAAYMESKTKEGT--EGKPKAEQQE 238

Query: 540 PERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQ 599
           PE+ THTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAA SLQ+ELE+EKS  +AI+Q
Sbjct: 239 PEKTTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAAISLQTELEKEKSLFSAIKQ 298

Query: 600 REGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQA 659
           REGMASV VA+L+AELD+TRSEIALVQM+EKEAREKTVE+PKQLQ+AA+ AD+AKSLAQ 
Sbjct: 299 REGMASVTVAALQAELDKTRSEIALVQMEEKEAREKTVEIPKQLQLAAEAADEAKSLAQM 358

Query: 660 AGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTD 719
           A EEL KAKEEAEQAKAGAST+ESRL AA+KEIEAARASEKLALAAIKAL+ESESAQ T+
Sbjct: 359 AHEELCKAKEEAEQAKAGASTMESRLLAAQKEIEAARASEKLALAAIKALEESESAQSTN 418

Query: 720 DVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKE 779
           +VD PT VTLSLEEYYELSKR+HEAEEQAN+RV  AISQIE AK SE R+ E+LE VN+E
Sbjct: 419 NVDLPTSVTLSLEEYYELSKRSHEAEEQANLRVATAISQIEAAKESESRTAEKLERVNQE 478

Query: 780 IATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRRKAGESGQG-VNSTKIPTPSL 838
           +  RKEALK+A++KAE+AKEGKLG+EQELRKWRAE+EQRR+A  SG G  N  K P  S 
Sbjct: 479 MTARKEALKIALDKAEQAKEGKLGVEQELRKWRAENEQRRRASNSGLGAANPNKSPRESF 538

Query: 839 EEKKDSKKYDRMSSAAAVPNMTSPKASMQGSNTETESSPEAKGPKKKKKSLFPRLFMFLA 898
           E +K+SK  DR+   AAV  +++PK+++ GSN  T+SSPE K P+KKKKSLFPR  +F A
Sbjct: 539 EVRKESKSVDRVLD-AAVDYVSNPKSNVPGSNAGTDSSPEVKAPRKKKKSLFPRFLLFFA 597

Query: 899 RRRSHASKS 907
           R++SH SK+
Sbjct: 598 RKKSHPSKT 606

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822189|ref|XP_002878977.1| hypothetical protein ARALYDRAFT_481517 [Arabidopsis lyrata subsp. lyrata] gi|297324816|gb|EFH55236.1| hypothetical protein ARALYDRAFT_481517 [Arabidopsis lyrata subsp. lyrata]

 Score =  878 bits (2268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/681 (70%), Positives = 559/681 (82%), Gaps = 12/681 (1%)

Query: 225 GSPKQFGSPRYGIS--SPKLAKQGEMKRGLIDTTAPFESVKEVVSKFGGIVDWKAHRMQT 282
           GSP+   SPR+  S  S    K  +  RGLIDT APFESVKE VSKFGGI DWK+HRMQ 
Sbjct: 123 GSPRTVSSPRFSGSPVSTGTPKNVDSHRGLIDTAAPFESVKEAVSKFGGITDWKSHRMQA 182

Query: 283 VERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEE 342
           VERRK +E+EL++ HEE+PEY+  SE AE AK QVLKEL+ TKRL+E+LKLNLE+AQTEE
Sbjct: 183 VERRKLIEEELKKIHEEIPEYKTHSETAEAAKLQVLKELESTKRLIEQLKLNLEKAQTEE 242

Query: 343 HQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKD 402
            QAKQDSELAKLRVEEMEQGIA+D SVAA+AQLEVAKARH  A+ EL SVK+E+E+L K+
Sbjct: 243 QQAKQDSELAKLRVEEMEQGIAEDVSVAAKAQLEVAKARHTTAIIELCSVKEELETLHKE 302

Query: 403 YASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGA 462
           Y +L+ EKD+AVKK EEA  ASKEVEKTVEELTIELIATKESLESAHA+HLEAEEQRIGA
Sbjct: 303 YDALLQEKDVAVKKVEEATLASKEVEKTVEELTIELIATKESLESAHASHLEAEEQRIGA 362

Query: 463 AMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESK 522
           AMARDQD+H WEKELKQAEEELQKL QQI S+KDL+SKLDTASALLLDLKAEL AYMESK
Sbjct: 363 AMARDQDTHRWEKELKQAEEELQKLNQQIHSSKDLKSKLDTASALLLDLKAELVAYMESK 422

Query: 523 LKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATS 582
           LK+E+  + ++N +    E  +H D+ AAVASAKKELEEV +NIEKA AEVN LK+A++S
Sbjct: 423 LKQEAC-DSNTNSD-PSTENMSHPDLHAAVASAKKELEEVNVNIEKAAAEVNSLKLASSS 480

Query: 583 LQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQ 642
           LQ ELE+EKS LA+I+QREGMAS+AVAS+EAE+DRTRSEIA VQ KEK+AREK VELPKQ
Sbjct: 481 LQLELEKEKSTLASIKQREGMASIAVASIEAEIDRTRSEIASVQSKEKDAREKMVELPKQ 540

Query: 643 LQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLA 702
           LQ AA+EAD+AKSLA+ A EEL KAKEEAEQAKAGAST+ESRL AA+KEIEAA+ASE+LA
Sbjct: 541 LQQAAEEADEAKSLAEVAREELRKAKEEAEQAKAGASTMESRLFAAQKEIEAAKASERLA 600

Query: 703 LAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVA 762
           LAAIKAL+ESES  + +D +SP  VTLSLEEYYELSKRAHEAEE AN RV AA+S+IE A
Sbjct: 601 LAAIKALEESESTLKANDTESPRSVTLSLEEYYELSKRAHEAEELANARVAAAVSRIEEA 660

Query: 763 KASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRRKAG 822
           K +E+RSLE+LEEVN+++  RK+ALK A EKAEKAKEGKLG+EQELRKWRA+HEQ+RKAG
Sbjct: 661 KETEMRSLEKLEEVNRDMDARKKALKEATEKAEKAKEGKLGVEQELRKWRADHEQKRKAG 720

Query: 823 ESGQGVNSTKIPTPSLEEKKDSKKYDRMSSAAAVPNMTSPKASMQGSNTETESSPEAKGP 882
           +   GVN+ K    S E  K  +     S  AAV   +  ++     N+ET  SP+ K  
Sbjct: 721 D---GVNTEKTQKESFEGGKMEQ-----SPEAAVYTSSPSESYGTEDNSETNLSPQTKSR 772

Query: 883 KKKKKSLFPRLFMFLARRRSH 903
           KKK K  FPR FMFL++++SH
Sbjct: 773 KKKMKLSFPRFFMFLSKKKSH 793

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	910
TAIR|locus:2066301	807	WEB1 "WEAK CHLOROPLAST MOVEMEN	0.867	0.977	0.509	1.4e-181
TAIR|locus:2119206	779	AT4G33390 "AT4G33390" [Arabido	0.795	0.929	0.481	1.4e-163
TAIR|locus:2160046	751	AT5G42880 "AT5G42880" [Arabido	0.502	0.608	0.416	3.8e-85
TAIR|locus:2825751	752	AT1G45545 "AT1G45545" [Arabido	0.517	0.626	0.401	2.3e-78
TAIR|locus:2176625	649	AT5G55860 "AT5G55860" [Arabido	0.564	0.791	0.216	1.4e-19
TAIR|locus:2201961	548	AT1G12150 "AT1G12150" [Arabido	0.438	0.728	0.207	1.4e-15
TAIR|locus:2057191	522	AT2G38370 "AT2G38370" [Arabido	0.281	0.490	0.265	4.1e-14
TAIR|locus:2130729	527	AT4G17210 "AT4G17210" [Arabido	0.276	0.478	0.212	3.4e-12
UNIPROTKB|F1PZZ3	1061	NEFH "Uncharacterized protein"	0.450	0.386	0.237	1.4e-11
DICTYBASE|DDB_G0270864	963	DDB_G0270864 "unknown" [Dictyo	0.487	0.461	0.230	4.7e-11

TAIR|locus:2066301 WEB1 "WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1762 (625.3 bits), Expect = 1.4e-181, P = 1.4e-181
 Identities = 415/814 (50%), Positives = 508/814 (62%)

Query:    94 MEDSKTEATKDNP-NGKQSQDDGSVIDSHVHTDNSDIPSVSSPQVHDSRDDQRIEPSDKL 152
             MED KT    DN  +    + +  +IDS +   N      S+ +V +    Q      + 
Sbjct:     1 MEDLKTVEASDNVVSDNVEKVNPELIDSTIRESNIQ----SATKVDNIPQSQTDTEETQQ 56

Query:   153 ALPHTELASIAVRAPGTVDSPKHVLDSPKPGDSPKYVLNSPKHVLDSPKSGD--SPKYV- 209
             +   TE    +     T ++  +V D+  P D+    + + K    +    +   P  + 
Sbjct:    57 SQTDTEETQQSQTDDTTGNAKIYVDDTFSPSDAATAAVLTGKDSTSTTIVEEVMEPDEIG 116

Query:   210 LNSPK---HLVNSPKHVFGSPKQFGSPRYGIS--SPKLAKQGEMKRGLIDTTAPFESVKE 264
             L S K       + ++  GSP+   SPR+  S  S    K  +  RGLIDT APFESVKE
Sbjct:   117 LPSVKITEAATGTARNGGGSPRTVSSPRFSGSPVSTGTPKNVDSHRGLIDTAAPFESVKE 176

Query:   265 VVSKFGGIVDWKAHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQT 324
              VSKFGGI DWK+HRMQ VERRK +E+EL++ HEE+PEY+  SE AE AK QVLKEL+ T
Sbjct:   177 AVSKFGGITDWKSHRMQAVERRKLIEEELKKIHEEIPEYKTHSETAEAAKLQVLKELEST 236

Query:   325 KRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVA 384
             KRL+E+LKLNL++AQTEE QAKQDSELAKLRVEEMEQGIA+D SVAA+AQLEVAKARH  
Sbjct:   237 KRLIEQLKLNLDKAQTEEQQAKQDSELAKLRVEEMEQGIAEDVSVAAKAQLEVAKARHTT 296

Query:   385 AVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKXX 444
             A++EL SVK+E+E+L K+Y +LV +KD+AVKK EEA+ ASKEVEKTVEELTIELIATK  
Sbjct:   297 AITELSSVKEELETLHKEYDALVQDKDVAVKKVEEAMLASKEVEKTVEELTIELIATKES 356

Query:   445 XXXXXXXXXXXXXQRIGAAMARDQDSHXXXXXXXXXXXXXXXXXXXILSAKDLRSKLDTA 504
                          QRIGAAMARDQD+H                   I S+KDL+SKLDTA
Sbjct:   357 LESAHASHLEAEEQRIGAAMARDQDTHRWEKELKQAEEELQRLNQQIHSSKDLKSKLDTA 416

Query:   505 SALLLDLKAELSAYMESKLKXXXXXXXXXXXXXXXXXRKTHTDIQAAVASAKKELEEVKL 564
             SALLLDLKAEL AYMESKLK                   +H D+ AAVASAKKELEEV +
Sbjct:   417 SALLLDLKAELVAYMESKLKQEACDSTTNTDPSTE--NMSHPDLHAAVASAKKELEEVNV 474

Query:   565 NIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIAL 624
             NIEKA AEV+CLK+A++SLQ ELE+EKS LA+I+QREGMAS+AVAS+EAE+DRTRSEIA 
Sbjct:   475 NIEKAAAEVSCLKLASSSLQLELEKEKSTLASIKQREGMASIAVASIEAEIDRTRSEIAS 534

Query:   625 VQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQXXXXXXXXXXXXXXXXXXXXSTIESR 684
             VQ KEK+AREK VELPKQLQ AA+EAD+AKSLA+                    ST+ESR
Sbjct:   535 VQSKEKDAREKMVELPKQLQQAAEEADEAKSLAEVAREELRKAKEEAEQAKAGASTMESR 594

Query:   685 LTAARKEIXXXXXXXXXXXXXIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEA 744
             L AA+KEI             IKAL+ESES  + +D DSP  VTLSLEEYYELSKRAHEA
Sbjct:   595 LFAAQKEIEAAKASERLALAAIKALEESESTLKANDTDSPRSVTLSLEEYYELSKRAHEA 654

Query:   745 EEQANMRVVAAISQIEVAKAXXXXXXXXXXXVNKEIATRXXXXXXXXXXXXXXXXXXLGI 804
             EE AN RV AA+S+IE AK            VN+++  R                  LG+
Sbjct:   655 EELANARVAAAVSRIEEAKETEMRSLEKLEEVNRDMDARKKALKEATEKAEKAKEGKLGV 714

Query:   805 EQELRKWRAEHEQRRKAGESGQGVNSTKIPTPSLEEKKDSKKYDRMSSAAAVPNMTSPKA 864
             EQELRKWRAEHEQ+RKAG+   GVN+ K    +L+E  +  K ++  S  AV   +SP  
Sbjct:   715 EQELRKWRAEHEQKRKAGD---GVNTEK----NLKESFEGGKMEQ--SPEAVVYASSPSE 765

Query:   865 SM-QGSNTETESSPEAKGPXXXXXSLFPRLFMFL 897
             S     N+ET  SP+ K         FPR FMFL
Sbjct:   766 SYGTEENSETNLSPQTKSRKKKKKLSFPRFFMFL 799

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0009903 "chloroplast avoidance movement" evidence=IMP

GO:0009904 "chloroplast accumulation movement" evidence=IMP

TAIR|locus:2119206 AT4G33390 "AT4G33390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1540 (547.2 bits), Expect = 1.4e-163, Sum P(2) = 1.4e-163
 Identities = 361/750 (48%), Positives = 467/750 (62%)

Query:    94 MEDSKTEATKDNPNGKQSQDDGSVIDSHVHTDNSDIPSV------SSPQVHDSRDDQRIE 147
             MED KT      P      D+G +I+  +    + IP+        +  +  S+ ++   
Sbjct:     1 MEDLKTTDALSLP---VVSDNGGIIEPELQLPQA-IPTELENNEEENGTIQQSQSEEDSA 56

Query:   148 PSDKLALPHTELASIAVRAPGTVDSPKHVLDSPKPGDSPKYVLNSPKHVLDSPKSGDSPK 207
              + K+ +  T L S + +   T DSP     +P    SP   +  P+        G +  
Sbjct:    57 ENGKIYMDDTFLPSKS-QVKETQDSPT----TPS-FVSPSAEIVLPRVNTKYEAEGTTRN 110

Query:   208 YVLNSPKHLVNSPKHVFGSPKQFGSPRYGISSPKLAKQGEMK----RGLIDTTAPFESVK 263
              V  SP+ L  SP+ + GSP+   SPR+  SS  L+    +     R  IDT +PFESVK
Sbjct:   111 AV--SPRPLY-SPRSI-GSPRALLSPRFAGSSSPLSNGTPISMDSFRDSIDTASPFESVK 166

Query:   264 EVVSKFGGIVDWKAHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQ 323
             E VSKFGGI DWKAHRM+ +ERR +VEQEL++  EE+PEY+K+SE  E++K   ++EL+ 
Sbjct:   167 EAVSKFGGITDWKAHRMKVLERRNFVEQELDKIQEEIPEYKKKSEMVEMSKMLAVEELES 226

Query:   324 TKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHV 383
             TKRL+EELKLNLE+A+TEE QAKQDSELAKLRV+EMEQGIAD+ASVA++AQLEVA+ARH 
Sbjct:   227 TKRLIEELKLNLEKAETEEQQAKQDSELAKLRVQEMEQGIADEASVASKAQLEVAQARHT 286

Query:   384 AAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKX 443
             +A+SEL+SVK+E+++L+ +Y +LV EKD+AVK+AEEA+ ASKEVE+ VEELTIELIATK 
Sbjct:   287 SAISELESVKEELQTLQNEYDALVKEKDLAVKEAEEAVIASKEVERKVEELTIELIATKE 346

Query:   444 XXXXXXXXXXXXXXQRIGAAMARDQDSHXXXXXXXXXXXXXXXXXXXILSAKDLRSKLDT 503
                            RIGAAM RDQ++H                   ++S K+L+ KL+ 
Sbjct:   347 SLECAHSSHLEAEEHRIGAAMLRDQETHRWEKELKQAEEELQRLKQHLVSTKELQVKLEF 406

Query:   504 ASALLLDLKAELSAYMESKLKXXXXXXXXXXXXXXXXXRKTHTDIQAAVASAKKELEEVK 563
             ASALLLDLK EL+ + ES                     KT TDIQ AVASAKKELEEV 
Sbjct:   407 ASALLLDLKKELADHKESSKVKEETSETVVTNIEISLQEKT-TDIQKAVASAKKELEEVN 465

Query:   564 LNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIA 623
              N+EKAT+EVNCLKVA++SL+ E+++EKSAL +++QREGMASV VASLEAE+D TR EIA
Sbjct:   466 ANVEKATSEVNCLKVASSSLRLEIDKEKSALDSLKQREGMASVTVASLEAEIDITRCEIA 525

Query:   624 LVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQXXXXXXXXXXXXXXXXXXXXSTIES 683
             LV+ KEKE RE+ VELPKQLQ A+QEAD+AKS A+                    ST+ES
Sbjct:   526 LVKSKEKETREEMVELPKQLQQASQEADEAKSFAELAREELRKSQEEAEQAKAGASTMES 585

Query:   684 RLTAARKEIXXXXXXXXXXXXXIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHE 743
             RL AA+KEI             IKALQESES+ + + VDSP  VTL++EEYYELSKRAHE
Sbjct:   586 RLFAAQKEIEAIKASERLALAAIKALQESESSSKENAVDSPRTVTLTIEEYYELSKRAHE 645

Query:   744 AEEQANMRVVAAISQIEVAKAXXXXXXXXXXXVNKEIATRXXXXXXXXXXXXXXXXXXLG 803
             AEE AN RV AA+S++  AK            VNKE+  R                  LG
Sbjct:   646 AEEAANARVAAAVSEVGEAKETEKRSLEKLEEVNKEMVERKATLAGAMEKAEKAKEGKLG 705

Query:   804 IEQELRKWRAEHEQRRKAGES-GQGVNSTK 832
             +EQELRKWR   E++RK G S G+ +  +K
Sbjct:   706 VEQELRKWREVSEKKRKNGSSHGKSIQGSK 735

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2160046 AT5G42880 "AT5G42880" [Arabidopsis thaliana (taxid:3702)]

 Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
 Identities = 202/485 (41%), Positives = 291/485 (60%)

Query:   182 PGDSPKYVLNSPKHVLDSPKS--GDSPKYVLNSPKHLVNSPK-HVFGSPKQFGSPRYGIS 238
             P + P  V  +P+ ++    S   DS   V+   + L  SP+  V  SP+ F  PR  + 
Sbjct:    54 PINEPPKVYVAPRVMISHQDSFSEDSRTDVIEDARILPASPRLRVPASPRAFVYPR-SVE 112

Query:   239 SPKLAKQGEMKR-------GLIDTTAPFESVKEVVSKFGGIVDWKAHRMQTVERRKYVEQ 291
             SP+      ++        G+IDT +PFESV+E VSKFGGI DWKAH++QT+ERRK V++
Sbjct:   113 SPRFGSPRSVESPCFGSPIGVIDTASPFESVREAVSKFGGITDWKAHKIQTIERRKMVDE 172

Query:   292 ELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSEL 351
             ELE+  E MPEY++ +E AE AK   L+EL+ TK L+EELKL LE+A+ EE QAKQDSEL
Sbjct:   173 ELEKIQEAMPEYKREAELAEEAKYDALEELENTKGLIEELKLELEKAEKEEQQAKQDSEL 232

Query:   352 AKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKD 411
             A++RVEEME+G+A++ASVA + QLEVAKAR V+A SEL+SV++E+E +  +Y  ++ EK+
Sbjct:   233 AQMRVEEMEKGVANEASVAVKTQLEVAKARQVSATSELRSVREEIEMVSNEYKDMLREKE 292

Query:   412 IAVKKAEEAISASKEVEKTVEELTIELIATKXXXXXXXXXXXXXXXQRIGAAMARDQDSH 471
             +A ++A+ A+  +KE+E+T++ L+IELIATK               +R   AMARDQD +
Sbjct:   293 LAAERADIAVLEAKEIERTMDGLSIELIATKELLESVHTAHLEAEEKRFSVAMARDQDVY 352

Query:   472 XXXXXXXXXXXXXXXXXXXILSAKDLRSKLDTASALLLDLKAELSAYMESKLKXXXXXXX 531
                                + +A D+++KL+TASAL  DLK EL+A+ +           
Sbjct:   353 NWEKELKMVENDIERLNQEVRAADDVKAKLETASALQHDLKTELAAFTD----------- 401

Query:   532 XXXXXXXXXXRKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREK 591
                        K   DI AAV SA++ELEEVK NIEKA +EV  LK+ A SLQSEL RE+
Sbjct:   402 --ISSGNLLLEKN--DIHAAVESARRELEEVKANIEKAASEVKKLKIIAGSLQSELGRER 457

Query:   592 SALAAIRQRE--GMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQE 649
               L   +Q+E  G+A         EL  T  ++     + ++A+        +L++A + 
Sbjct:   458 QDLEETKQKESTGLARTNDKDAGEELVETAKKLEQATKEAEDAKALATASRDELRMAKEL 517

Query:   650 ADQAK 654
             ++QAK
Sbjct:   518 SEQAK 522

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2825751 AT1G45545 "AT1G45545" [Arabidopsis thaliana (taxid:3702)]

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 199/496 (40%), Positives = 292/496 (58%)

Query:   178 DSPKPGDSPKYVLN-SPKHVLDSPKSG--DSPKYVLNSP---KHLVNSPKHVFGSPKQFG 231
             +SPK   +P+ ++N      LDS      +  K +  SP   + L  S   V GSP+ F 
Sbjct:    77 ESPKVYIAPRVMINHQDSFSLDSRNDEYIEDVKILPGSPGGIQDLGLSRLKVPGSPRAFV 136

Query:   232 SPRYGISSPKLAKQGEMKRGLIDTTAPFESVKEVVSKFGGIVDWKAHRMQTVERRKYVEQ 291
              PR    SP+          LIDT APFESVKE VSKFGGI DWKAH++QT+ERRK V+Q
Sbjct:   137 HPRSS-GSPRFVSPTSPV--LIDTAAPFESVKEAVSKFGGITDWKAHKIQTIERRKTVDQ 193

Query:   292 ELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSEL 351
             ELE+  E+MP+Y+K++  AE AK+QV+ EL++T+ +VEELKL LE+A+ EE QAKQDS+L
Sbjct:   194 ELEKIQEDMPDYKKQAVVAEEAKHQVVMELERTRNVVEELKLELEKAEKEEQQAKQDSDL 253

Query:   352 AKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKD 411
             AKLRVEEMEQGIA + SVAA++QLEVAKARH++AVSEL ++++E+E +  +Y SL+TEKD
Sbjct:   254 AKLRVEEMEQGIAGEVSVAAKSQLEVAKARHLSAVSELGTIREEIEMVSNEYESLLTEKD 313

Query:   412 IAVKKAEEAISASKEVEKTVEELTIELIATKXXXXXXXXXXXXXXXQRIGAAMARDQDSH 471
             +A KKAE+++  +K+VEK +E LT+E+IATK               +++ AAMARDQD +
Sbjct:   314 LAAKKAEDSVLKAKDVEKQMEGLTMEVIATKQLLELAHATHLEAQEKKLDAAMARDQDVY 373

Query:   472 XXXXXXXXXXXXXXXXXXXILSAKDLRSKLDTASALLLDLKAELSAYMESKLKXXXXXXX 531
                                I +A D+++KL TASAL  DL+AE++AY +S +        
Sbjct:   374 NQEKELKMVEDEIKRFRQDIDAADDVKTKLKTASALQQDLRAEIAAYKDSNM---GKRNN 430

Query:   532 XXXXXXXXXXRKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLK--VAATSLQS-ELE 588
                       RK   ++ + +  A  E++ +K+ +    +E+   K  ++ T  ++ E  
Sbjct:   431 SDIQAAVDSARKELEEVISNIEKANSEVKTLKIIVGSLQSELAREKHDLSETRQRNREDT 490

Query:   589 RE-------KSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPK 641
             RE       K    A R+ E   S+A+A+ E EL + + E    +        + +E  K
Sbjct:   491 REEKCTEIAKKLQEASREAEEAKSLAIAARE-ELRKAKEESDEAKTGLSAVERQLMESKK 549

Query:   642 QLQVAAQEADQAKSLA 657
             +++  A  A +  +LA
Sbjct:   550 EME--ASRASEKLALA 563

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2176625 AT5G55860 "AT5G55860" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 117/540 (21%), Positives = 201/540 (37%)

Query:   299 EMPEYRKRS-EAAE-VAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRV 356
             E P +RK + ++AE V   Q   EL   ++ + +LK  L+ A+T   QA  + E +K  V
Sbjct:    46 EKPVFRKPNPQSAEKVLVKQT--ELHLAQKELNKLKEQLKNAETIREQALSELEWSKRTV 103

Query:   357 EEMEQGI---------ADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLV 407
             +E+ + +         A+ A+ AA++ +E AK  +V+  S   +   ++E    +Y  + 
Sbjct:   104 DELTRKLEAVNESRDSANKATEAAKSLIEEAKPGNVSVASSSDAQTRDME----EYGEVC 159

Query:   408 TEKDIAVKKAEEAISASKEVEKTVEELTIELIATKXXXXXXXXXXXXXXXQRIGAAMARD 467
              E D A ++  +    S E+   +E  T+ L   +                R   A   +
Sbjct:   160 KELDTAKQELRKIRQVSNEI---LETKTVALSKVEEAKKVSKVHSEKIELLRKEIAAVNE 216

Query:   468 QDSHXXXXXXXXXXXXXXXXXXXILSAKDLRSKLDTASALLLDLKAELSAYMESKLKXXX 527
                                     +  K  ++ ++ ++   L LK E       KL+   
Sbjct:   217 SVEQTKLACSQARKEQSEIFAEKEIQQKSYKAGMEESAKKSLALKNEFDPEFAKKLEVQL 276

Query:   528 XXXXXXXXXXXXXXRKTH-TDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSE 586
                                +DI + V     EL E K   EK   E   L+    SL++E
Sbjct:   277 TETYNEIDELQKQMETAKASDIDS-VNGVSLELNEAKGLFEKLVEEEKSLQELVESLKAE 335

Query:   587 LEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVA 646
             L+  K     +  +E         L  +L R++SE+     +E +A+    ++   +   
Sbjct:   336 LKNVKMEHDEVEAKEAEIESVAGDLHLKLSRSKSELEQCVTEESKAKAALEDMMLTINQI 395

Query:   647 AQEADQAKSLAQXXXXXXXXXXXXXXXXXXXXSTIESRLTAARKEIXXXXXXXXXXXXXI 706
             + E + A+  A+                       E  L  A  E              I
Sbjct:   396 SSETEAARREAEGMRNKAKELMKEAESAHLALEDSELHLRVALDEAEEAKAAETKALEQI 455

Query:   707 KALQESESAQR--TDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKA 764
             K++ E  +A R  T        +TLS EE+  LSKRA   ++ A M+V AA++Q+E  +A
Sbjct:   456 KSMSEKTNAARNSTSSESGSQSITLSQEEFKSLSKRAEVFDKLAEMKVAAALAQVEAVRA 515

Query:   765 XXXXXXXXXXXVNKEIATRXXXXXXXXXXXXXXXXXXLGIEQELRKWRAEHEQRRKAGES 824
                          +EI                       +E ELR+WR E +Q+ KA E+
Sbjct:   516 SENETLKKLETTQEEIKKLKTATEEALKKAAMADAAKKAVEGELRRWR-ERDQK-KAEEA 573

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2201961 AT1G12150 "AT1G12150" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
 Identities = 87/419 (20%), Positives = 175/419 (41%)

Query:   248 MKRGLIDTTAPFESVKEVVSKFGGIVDWKAH---RMQTVERRKYVEQELERS--HEEMPE 302
             M+ G IDT APF+SVK  VS FG +   K     R   +      ++E +    H+E  +
Sbjct:    16 MEVGEIDTRAPFQSVKAAVSLFGEVAVSKQRSTPRRSRLSSESVCDKETQLMLVHKEFMK 75

Query:   303 YRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQG 362
              +++ + AE  +++ L +L + K+ +E+L   LE     +  A    E  + R E++E  
Sbjct:    76 IKQKLDNAESTRSRALDDLSKAKKTMEDLSNKLETVNKSKQSAIDTKETVQQREEQLEHD 135

Query:   363 IADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAIS 422
                  S     +L+VA+ ++++   EL + K ++  +R+ + S +  K  A+ +A EA  
Sbjct:   136 KCH-GSPPHHHELDVAREQYISTTVELDAAKQQLNKIRQSFDSAMDFKATALNQAAEAQR 194

Query:   423 ASKEVEKTVEELTIELIATKXXXXXXXXXXXXXXXQRIGAAMARD--QDSHXXXXXXXXX 480
             A +     V EL+ E+   K               +       +D  ++ +         
Sbjct:   195 ALQVNSAKVNELSKEISDMKDAIHQLKLAAAQNLQEHANIVKEKDDLRECYRTAVEEAEK 254

Query:   481 XXXXXXXXXXILSAKDLRSKL-DTASALLLDLKAELSAYMESKLKXXXXXXXXXXXXXXX 539
                          ++ L +KL +T S + + L+ E+    ES++                
Sbjct:   255 KLLVLRKEYEPELSRTLEAKLLETTSEIEV-LREEMKKAHESEMNTVKIITNELNEATMR 313

Query:   540 XXRKTHTD--IQAAVASAKKELEEVKLNIEKATA-EVNCLKVAATSLQSELEREKSALAA 596
                    +  +++ V S + ELE+++   E+    E   L++  T     L++E   L  
Sbjct:   314 LQEAADDECSLRSLVNSLRMELEDLRREREELQQKEAERLEIEETKKLEALKQESLKLEQ 373

Query:   597 IRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKS 655
             ++     A    A++  +++  + E     +  +EA        K+L++  +E ++AKS
Sbjct:   374 MKTEAIEARNEAANMNRKIESLKKETEAAMIAAEEAE-------KRLELVIREVEEAKS 425

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2057191 AT2G38370 "AT2G38370" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 4.1e-14, P = 4.1e-14
 Identities = 73/275 (26%), Positives = 118/275 (42%)

Query:   557 KELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELD 616
             K+L + K+N+ K  +    ++ +   L+++L  E++AL   R+R    S+ V SLE E  
Sbjct:   134 KDLSQAKMNLCKIAS----IRESVEQLKNKLNEERAALEKTRERLMEKSLKVFSLEEEEV 189

Query:   617 RTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQXXXXXXXXXXXXXXXXXX 676
             R R        KE +  EK + +  ++Q  +++A + K   +                  
Sbjct:   190 RVRFA------KEGQTGEKDLGMLNEVQRLSRQAQEVKKTGENAELEVVKAMAETESTRD 243

Query:   677 XXSTIESRLTAARKEIXXXXXXXXXXXXXIKALQESESAQRTDDVDSPTGVTLSLEEYYE 736
                T + RL AARK                 A+ E E+   + +V     VT+S EEY  
Sbjct:   244 KIRTAKIRLVAARK------MKEAAREAEAVAIAEIEAVTGSMNVGKAEAVTISAEEYSV 297

Query:   737 LSKRAHEAEEQANMRVVAAISQIEVAKAXXXXXXXXXXXVNKEIATRXXXXXXXXXXXXX 796
             L++ A +AEE+A  RV  A+S++E A               +EI T              
Sbjct:   298 LARSARDAEEEARKRVEDAMSRVEEANVSKKDVLKKVDEAAQEIETSKRVLEEAVERVDA 357

Query:   797 XXXXXLGIEQELRKWRAEHEQRRKAGESGQGVNST 831
                  +  E+ LRKWR+E+ QRR+   S   VN+T
Sbjct:   358 ANASKIEAEEALRKWRSENGQRRRLSSS---VNNT 389

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2130729 AT4G17210 "AT4G17210" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
 Identities = 56/263 (21%), Positives = 97/263 (36%)

Query:   556 KKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAEL 615
             KK++EE+   +E +T E   L+     L  EL+  KSA+  I   E      V SL  EL
Sbjct:   270 KKDIEEL---MEIST-ENERLQ-EEIKLSGELKEAKSAMQEIYDEESSYKSLVGSLTVEL 324

Query:   616 DRTRSEIALVQMKEKEARE----KTVELPKQLQVAAQEADQAKSLAQXXXXXXXXXXXXX 671
             D  + E   ++ KEKE +E    + VE  +++    +EA++ +  A+             
Sbjct:   325 DGVQRENRELKGKEKERQEAEEGEWVEASRKVDEIMREAEKTRKEAEEMRMNVDELRREA 384

Query:   672 XXXXXXXSTIESRLTAARKEIXXXXXXXXXXXXXIKALQESESAQRTDDVDSPTGVTLSL 731
                         +L    + +             +K L E + +   D+ D    + +SL
Sbjct:   385 AAKHMVMGEAVKQLEIVGRAVEKAKTAEKRAVEDMKVLTEKKESLTHDEPDKK--IRISL 442

Query:   732 EEYYELSKRAHEAEEQANMRVVAAISQIEVAKAXXXXXXXXXXXVNKEIATRXXXXXXXX 791
             +EY EL  +  E+E     +     +Q+E                 KE+           
Sbjct:   443 KEYEELRGKHEESERMVQFKAKTVAAQLEEINESRIEGERKLEEKIKEMEELKAAIDGAL 502

Query:   792 XXXXXXXXXXLGIEQELRKWRAE 814
                         ++ ELRKW+ +
Sbjct:   503 RKAEIAEEAHSIVDAELRKWKPQ 525

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1PZZ3 NEFH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 205 (77.2 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
 Identities = 105/443 (23%), Positives = 179/443 (40%)

Query:     6 IAEEMPPPESTLSPKADNGSSSELPEDPV---TNGKVSNELSNMETSKPKPVEDTADVPV 62
             + EE   PE   SP  +   S E  + PV       V  E  + E +K  PV++ A  P 
Sbjct:   606 VKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPVKEEAKSPEKTK-SPVKEEAKSPE 664

Query:    63 GGQDEVLSADNSVSNSAIAIDESETDHRDTVMEDSKTEATKDNPNGKQSQDDGSVIDSHV 122
               +     A + V   A    +S    +  V E++K+     +P  ++++       S V
Sbjct:   665 KAKSPE-KAKSPVKEEA----KSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKKAKSPV 719

Query:   123 HTDNSDIPSVSSPQVHDSRDDQRIEPSDKLALPHTELASIAVR----APGTVDSP-KHVL 177
               +        SP   +++  ++ +   K      E A   V+    +P    SP K   
Sbjct:   720 KEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEA 779

Query:   178 DSPKPGDSPKYVLNSPKHVLDSPKSGDSPKYVLNSPKHLVNSPKHVFGSPKQFGSP-RYG 236
              SP+   SP+   +  K    SP+   SP+   +  K    SP+    SP++  SP +  
Sbjct:   780 KSPEKAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKA-KSPEKVKSPVKEE 838

Query:   237 ISSPK--LAKQGEMKRGLIDTTAPFE-SVKEVVSKFGGIVDWKAHRM-QTVERRKYVEQE 292
               +P+  + K+ E K  + +   P E  VKE   K     + KA    +T E++   + E
Sbjct:   839 TKAPEKEVTKKEEAKSPIKEEEKPQEVKVKEPAKK---AEEEKAPATPKTEEKKDSKKDE 895

Query:   293 LERSHEEMPEYRKRSEAA----EVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQD 348
             + +     PE  ++ E A    + +K +  KE +  K+ V   K  +     EE + K+ 
Sbjct:   896 VPKKEAPKPEVPEKKEPAVEKPKESKVEAKKETEDKKKAVTPEK-EVPAKVKEEAKPKEK 954

Query:   349 SELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDE-VESLRKDYASLV 407
             +E+AK   +E +   A + S AA  + E  K     A  E K VK+E     +K      
Sbjct:   955 AEVAK---KEQDDAKAKEPSKAAEKEPEKPKKEGTPAAPEKKDVKEEKTPEAKKSEEKPK 1011

Query:   408 TEKDIAVKKAEEAISASK-EVEK 429
              E     + ++EA +  K + EK
Sbjct:  1012 AEAPAKEEPSKEAPTPGKAKTEK 1034

GO:0005882 "intermediate filament" evidence=IEA

DICTYBASE|DDB_G0270864 DDB_G0270864 "unknown" [Dictyostelium discoideum (taxid:44689)]

 Score = 176 (67.0 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
 Identities = 112/485 (23%), Positives = 193/485 (39%)

Query:   279 RMQTVERRKYVEQELERSHEEMPEYRKRSE----AAEVAKNQVLKELDQTKRLVEELKL- 333
             +++  ++RK   QE +R  +E     K+ E    AAE ++N   K L +  RL EE +L 
Sbjct:   370 QLEKEKQRKLELQEKKRLADEQAAVAKKLENDRLAAEESEN---KRLTEEARLAEEKRLV 426

Query:   334 NLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQL-EVAKARHVAAVSELKSV 392
              LE+ ++EE +AK+ +E A+L  E+    +A+++ +A   +L E  +A  VA  +  K  
Sbjct:   427 ELEKKRSEEEEAKRLAEEARLAEEKR---LAEESRLAEEKKLTEEVEANRVAQEAAKKVE 483

Query:   393 KDEVESLRKDYASLV--TEK---DIAVKKAEEAISASKEVEKTVEE-LTIELIATKXXXX 446
             +D +  L K   +    T+K   + A KKAE+   A++  +K  EE L +E         
Sbjct:   484 EDRLAELEKKRLAEEEQTKKLAEEAAAKKAEDDRLAAEAAKKAEEERLAVEAAKKAEEDR 543

Query:   447 XXXXXXXXXXXQRIGAA-MARDQDSHXXXXXXXXXXXXXXXXXXXILSAKDLRSKLDTAS 505
                        +R+      R  D                       +AK       TA 
Sbjct:   544 LAAEAAKKEEEERLAEIEKKRLADEQEAKRIAEEEAKRAEEARLAEEAAKKAEEDRLTAE 603

Query:   506 ALLLDLKAELSAYMESKLKXXXXXXXXXXXXXXXXXRKTHTDIQAAVASAKKELEEVKLN 565
             A     KAE     E +L                  +K   +  AA A+ K E E +   
Sbjct:   604 AAK---KAE-----EQRLAAEAAKKAEEDRLAAEAAKKAEEERLAAEAAKKAEEERLAAE 655

Query:   566 IEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALV 625
               K   E    ++AA + + E ER   A  A+++ E     A  + +AE +R  +E A  
Sbjct:   656 AAKKAEEE---RLAAEAAKKEEER--LAAEAVKKEEEERLAAEVAKKAEEERLTAEAAKK 710

Query:   626 QMKEKEAREKTVELPKQLQVAAQEADQAKSLAQXXXXXXXXXXXXXXXXXXXXSTIESRL 685
             + +E+ A E   +  ++ ++AA+ A + +                           E   
Sbjct:   711 EEEERLAAEAAKKAEEE-RLAAEAAKKEEERLAAEAAKKAEEERLAAEKEAKRIAEEVAA 769

Query:   686 TAARK---EIXXXXXXXXXXXXXIKALQESESAQRTDDVDSPTGVTLSLEE-YYELSKRA 741
              AA+K   E               KAL+E E  ++     S T V+ S++  +++  KR 
Sbjct:   770 VAAKKAEEERLAAEAENKRLEDEQKALKEKEEKEKQQ---SKT-VSPSIDHSHHDKRKRG 825

Query:   742 HEAEE 746
             H+ ++
Sbjct:   826 HDGDD 830

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O48724	WEB1_ARATH	No assigned EC number	0.7021	0.7307	0.8240	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_40000107 hypothetical protein (672 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	910
pfam05701	484	pfam05701, DUF827, Plant protein of unknown functi	1e-111
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-14
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-14
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-13
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-10
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-09
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-09
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	4e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-09
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-07
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-07
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	2e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	8e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	2e-05
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	2e-05
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	2e-04
PRK11281	1113	PRK11281, PRK11281, hypothetical protein; Provisio	2e-04
pfam13514	1118	pfam13514, AAA_27, AAA domain	3e-04
pfam13514	1118	pfam13514, AAA_27, AAA domain	4e-04
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	4e-04
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	4e-04
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	6e-04
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	7e-04
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	7e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-04
PRK05035	695	PRK05035, PRK05035, electron transport complex pro	8e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
pfam13514	1118	pfam13514, AAA_27, AAA domain	0.001
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	0.001
TIGR00998	334	TIGR00998, 8a0101, efflux pump membrane protein (m	0.001
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.002
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	0.002
PRK05035	695	PRK05035, PRK05035, electron transport complex pro	0.002
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	0.002
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.003
pfam00529	304	pfam00529, HlyD, HlyD family secretion protein	0.003
COG1566	352	COG1566, EmrA, Multidrug resistance efflux pump [D	0.003
COG1538	457	COG1538, TolC, Outer membrane protein [Cell envelo	0.003
COG1566	352	COG1566, EmrA, Multidrug resistance efflux pump [D	0.004
PRK12472	508	PRK12472, PRK12472, hypothetical protein; Provisio	0.004
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	0.004

>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827)

 Score =  350 bits (900), Expect = e-111
 Identities = 286/535 (53%), Positives = 353/535 (65%), Gaps = 52/535 (9%)

Query: 257 APFESVKEVVSKFGGIVDWKAHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQ 316
           APFESVKE VS FGGI DWKAH  Q  ER    E EL  + EE  + +K  E AE  K Q
Sbjct: 2   APFESVKEAVSLFGGIADWKAHLPQRSERVLVKETELMLAQEEANKLKKELEVAEKEKLQ 61

Query: 317 VLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLE 376
           VLKEL+ TKR VE+LKL LE+A+ EE QAKQDSELAKLR EE+EQGI            E
Sbjct: 62  VLKELESTKRTVEDLKLKLEKAEKEEQQAKQDSELAKLRAEELEQGIQ-----------E 110

Query: 377 VAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTI 436
           +   R++ A +EL SVK+E+  +R++Y +LV E+D A+K+AEEAI ASK  EK VEELT 
Sbjct: 111 LEVERYITATAELDSVKEELRKIRQEYDALVEERDAALKRAEEAICASKVNEKKVEELTK 170

Query: 437 ELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKD 496
           E+IA KESLE AHAAHLEAEE+RIGAA+ +DQD   +EKELK+AE+EL++L Q +   KD
Sbjct: 171 EIIAMKESLERAHAAHLEAEEERIGAALEKDQDRETYEKELKEAEKELERLKQDLDPEKD 230

Query: 497 LRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAK 556
           L  KL  ASA L  L+ E+S                               I A+VAS  
Sbjct: 231 LE-KLAEASAELESLQKEIS-------------------------------IMASVASVL 258

Query: 557 KELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELD 616
           KELEE K N+EKA  E   L+    SL+ ELE EK  L  +R++EG A  A +SLEAEL+
Sbjct: 259 KELEEAKANLEKAAEEEKSLRNLVESLKQELEEEKKELEELREKEGEAEEAASSLEAELN 318

Query: 617 RTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKA 676
           RT+SE      KE +AREK VE+P +LQ A+ EA++A+  A+AA EEL K KEEAEQ KA
Sbjct: 319 RTKSE------KESKAREKMVEIPLKLQQASSEAEEARKEAEAAREELRKLKEEAEQTKA 372

Query: 677 GASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYE 736
              T E RL AA KE EAA+A+E LALA IKALQESE + +    DSP  +TLSLEEY E
Sbjct: 373 ALETAELRLEAALKEAEAAKAAEALALAEIKALQESEESAKA---DSPRKITLSLEEYEE 429

Query: 737 LSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAM 791
           LSK+A EAEE A  +V AA++Q+E AK SE  SL++LEE +KEI  +K AL+ A+
Sbjct: 430 LSKKAEEAEELAEKKVAAALAQVEEAKESENESLKKLEEASKEIEEKKAALEEAL 484

This family consists of several plant proteins of unknown function. Several sequences in this family are described as being "myosin heavy chain-like". Length = 484

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 75.9 bits (187), Expect = 6e-14
 Identities = 73/327 (22%), Positives = 141/327 (43%), Gaps = 16/327 (4%)

Query: 474  EKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHS 533
            + EL+  E+ L++L +Q+   +    +L    A L +   +L + +E   +E    E   
Sbjct: 694  KNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEEL 753

Query: 534  NGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSA 593
                E  E      ++  + S ++ L ++K  IE+   +   L+     L+ ELE  +  
Sbjct: 754  EELQERLEE-----LEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERR 808

Query: 594  LAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQA 653
            L A+ +           LE E++    EI  ++ K  E  E+  EL K+L+   +E ++ 
Sbjct: 809  LDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEEL 868

Query: 654  KSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQ-ES 712
            ++  +   +EL + +EE E+ +     +ES L   ++EIE  R   +   A ++ L+ E 
Sbjct: 869  EAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVEL 928

Query: 713  ESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLER 772
               +   + +    +   LE   E  +   EA    N+R   AI + E  +       ER
Sbjct: 929  PELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLR---AIEEYEEVE-------ER 978

Query: 773  LEEVNKEIATRKEALKVAMEKAEKAKE 799
             EE+  +    +EA +  +E  E+  +
Sbjct: 979  YEELKSQREDLEEAKEKLLEVIEELDK 1005

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 75.9 bits (187), Expect = 7e-14
 Identities = 103/555 (18%), Positives = 222/555 (40%), Gaps = 53/555 (9%)

Query: 276 KAHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNL 335
           +  R +  +  + + ++LE +  E+ E +   E  E    ++ +EL++ +  +EEL+  L
Sbjct: 413 EDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEELEELQEELERLEEALEELREEL 470

Query: 336 ERAQTEEHQAKQDSELAKLRVEEME--QGIADDASVAARAQLEVAK--ARHVAAVSELKS 391
           E A+     A+++    + R++ +E  Q   +  S   +A L+     +  +  +SEL S
Sbjct: 471 EEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELIS 530

Query: 392 VKDEVES-----LRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLE 446
           V +  E+     L     ++V E   A KKA   +  ++    T   L          ++
Sbjct: 531 VDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDS---IKGTEIQ 587

Query: 447 SAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASA 506
                 L+  E  +G A           K+L + + +L+K    +L    +   LD A  
Sbjct: 588 GNDREILKNIEGFLGVA-----------KDLVKFDPKLRKALSYLLGGVLVVDDLDNALE 636

Query: 507 LLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNI 566
           L   L+        +   +     G   G   +          +++   ++E+EE++  I
Sbjct: 637 LAKKLRPGYRIV--TLDGDLVRPGGVITGGSAKTN--------SSILERRREIEELEEKI 686

Query: 567 EKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQ 626
           E+   ++  L+ A   L+ ELE  +  L  +R+     S  +++L  +L R  +E+  ++
Sbjct: 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746

Query: 627 MKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLT 686
            +  +  ++  EL  +++   +  ++A+     A  E+ + + + EQ K     +   L 
Sbjct: 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD 806

Query: 687 AARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEE 746
             R E+             +++L+   +A                    +L ++  E  E
Sbjct: 807 ELRAELTLLNEEAANLRERLESLERRIAATER--------------RLEDLEEQIEELSE 852

Query: 747 QANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQ 806
                + +  ++IE  +         LE +  E A+ +EAL +   + E+  E    +E 
Sbjct: 853 D----IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908

Query: 807 ELRKWRAEHEQRRKA 821
           +  + R E E+ R+ 
Sbjct: 909 KRSELRRELEELREK 923

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 73.3 bits (179), Expect = 5e-13
 Identities = 131/578 (22%), Positives = 244/578 (42%), Gaps = 37/578 (6%)

Query: 291  QELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSE 350
            +E  ++ E   +     +A E  K +  ++ ++ ++  +  ++ + R   +  +A++   
Sbjct: 1112 EEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEAR- 1170

Query: 351  LAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDE--VESLRKDYASLVT 408
                + E+ ++  A   +   R   E+ KA         +  ++E   E  RK   +   
Sbjct: 1171 ----KAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKA 1226

Query: 409  EKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAH----LEAEEQRIGAAM 464
            E   AVKKAEEA   ++E +K  EE   E I   E    AH A     ++AEE R    +
Sbjct: 1227 E---AVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADEL 1283

Query: 465  ARDQDSHLWEKELKQAEE-----ELQKLTQQILSAKDLRSKLDTASALLLDLK-----AE 514
             + ++    + E K+AEE     E +K  ++   A + + K + A       K     A+
Sbjct: 1284 KKAEEKKKAD-EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK 1342

Query: 515  LSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVN 574
             +A       E + +E  +  E  E   K   + +    +AKK+ EE K   ++A  +  
Sbjct: 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK-KADEAKKKAE 1401

Query: 575  CLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEI---ALVQMKEKE 631
              K  A  L+     +K A  A ++ E       A  +AE  +   E    A    K +E
Sbjct: 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEE 1461

Query: 632  AREKTVELPK--QLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAAR 689
            A++K  E  K  + +  A+EA +A    + A E   KA E  + A+A     E++     
Sbjct: 1462 AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEA 1521

Query: 690  KEIEAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQAN 749
            K+ + A+ +E+   A     +++E  ++ D++     +  + E+      +  E ++   
Sbjct: 1522 KKADEAKKAEEAKKA--DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMA 1579

Query: 750  MRVVAAISQIEVAKASELRSLERLEEVNK-EIATRKEALKVAMEKAEKAKEGKLGIEQEL 808
            +R      + E A+  E+  L   E+  K E A + E  K+  E+ +KA+E K  +EQ  
Sbjct: 1580 LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639

Query: 809  RKWRAEHEQRRKAGESGQGVNSTKIPTPSLEEKKDSKK 846
            +K   E E+++KA E  +     KI      +K +  K
Sbjct: 1640 KK---EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK 1674

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 68.2 bits (166), Expect = 2e-11
 Identities = 122/553 (22%), Positives = 230/553 (41%), Gaps = 36/553 (6%)

Query: 276  KAHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNL 335
            +A       R+  ++ E  R  +E+ +  ++ +A E  K +  K+ D+ K+  EE K   
Sbjct: 1259 EARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAK-KA 1317

Query: 336  ERAQTEEHQAKQDSELAKLRVEEMEQG--IADDASVAARAQLEVAKARHVAAVSELKSVK 393
            + A+ +  +AK+ ++ AK + EE ++    A   + AA  + E A+ +  AA  + +  K
Sbjct: 1318 DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377

Query: 394  DEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHL 453
             + ++ +K  A    + D A KKAEE    + E++K          A K++ E       
Sbjct: 1378 KKADAAKKK-AEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKK----- 1431

Query: 454  EAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTA-SALLLDLK 512
            +A+E +  A  A+  D    + E  +  EE +K  ++   A + + K + A  A     K
Sbjct: 1432 KADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK 1491

Query: 513  AELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAE 572
            AE +     + K+ +  +  ++ E ++ E     D +A  A   K+ +E K   EK  A+
Sbjct: 1492 AEEAKKKADEAKKAAEAKKKAD-EAKKAEEAKKAD-EAKKAEEAKKADEAKKAEEKKKAD 1549

Query: 573  VNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEA 632
                ++       + E +K A  A +  E        + EA+         ++++ E+E 
Sbjct: 1550 ----ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK 1605

Query: 633  REKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEI 692
            + K  E  K  +   +  +  K+  +    E  K KE  E+ KA            +   
Sbjct: 1606 KMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAE 1665

Query: 693  EAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRV 752
            EA +A E          +++E A++ ++           +E         EAEE      
Sbjct: 1666 EAKKAEED--------KKKAEEAKKAEE-----------DEKKAAEALKKEAEEAKKAEE 1706

Query: 753  VAAISQIEVAKASELRSLERLEEVNKEIATRK-EALKVAMEKAEKAKEGKLGIEQELRKW 811
            +      E  KA EL+  E   ++  E A ++ E  K   E+A+K +E K  I    ++ 
Sbjct: 1707 LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEE 1766

Query: 812  RAEHEQRRKAGES 824
              + E+ RK  E+
Sbjct: 1767 EKKAEEIRKEKEA 1779

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 65.8 bits (161), Expect = 7e-11
 Identities = 56/303 (18%), Positives = 120/303 (39%), Gaps = 14/303 (4%)

Query: 302 EYRKRSEAAEVA-----KNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRV 356
           E +      E+A       ++ +EL++ +  ++E +  LE    E  + ++  E  +L V
Sbjct: 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV 276

Query: 357 EEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKK 416
            E+E+ I +      + +L            + + +++ + +L +    L  + +    K
Sbjct: 277 SELEEEIEE-----LQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESK 331

Query: 417 AEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKE 476
            +E      E+E+ +EEL  EL + +  LE   A   E E +        +        +
Sbjct: 332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR----SK 387

Query: 477 LKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGE 536
           + Q E ++  L  +I   +    +L+     L     EL   +E    +E   E     E
Sbjct: 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447

Query: 537 LEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAA 596
             E  ++    ++ A+   ++ELEE +  ++ A  E+  L+    SL+   E  +     
Sbjct: 448 ELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG 507

Query: 597 IRQ 599
           ++ 
Sbjct: 508 VKA 510

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 65.5 bits (160), Expect = 9e-11
 Identities = 71/361 (19%), Positives = 149/361 (41%), Gaps = 25/361 (6%)

Query: 319  KELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVA 378
            +EL + +  + EL+  LE+ + E    K +    +  +EE+ + + +        QLE  
Sbjct: 667  RELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEE-----LERQLEEL 721

Query: 379  KARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIEL 438
            K    A   EL+ ++  +E L ++   L  E +   ++ EE     + +E+ + +L  E+
Sbjct: 722  KRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI 781

Query: 439  IATKESLESAHAAHLEAEEQRIGAAMARDQ---DSHLWEKELKQAEEELQKLTQQILSAK 495
               +E  ++      E EE+   A    D    +    E+  ++ E+E+++L ++I   +
Sbjct: 782  EELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELE 841

Query: 496  DLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASA 555
            +   +L+     L     EL   +E    E+   E                +++      
Sbjct: 842  EKLDELEEELEELEKELEELKEELEELEAEKEELE------------DELKELEEEKEEL 889

Query: 556  KKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAEL 615
            ++EL E++  + +   E+  L+     L+++LER +  L  + +            E E 
Sbjct: 890  EEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELER 949

Query: 616  DRTRSEIAL-----VQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEE 670
            +  R E  +     V ++  E  E+  E  ++L+   ++ ++AK       EEL K K E
Sbjct: 950  EIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRE 1009

Query: 671  A 671
             
Sbjct: 1010 R 1010

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.7 bits (158), Expect = 2e-10
 Identities = 69/322 (21%), Positives = 149/322 (46%), Gaps = 9/322 (2%)

Query: 281 QTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQT 340
           +  E  K ++ EL    + + E R++ E  E    ++ +EL   +  +E+L+  LE  + 
Sbjct: 685 KLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEE 744

Query: 341 EEHQAKQDSELAKLRVEEMEQ--GIADDASVAARAQLEVAKARHVAAVSELKSVKDEVES 398
           E  + +++ E  + R+EE+E+     ++A    + ++E  + +  A   EL+ +++E+E 
Sbjct: 745 ELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEE 804

Query: 399 LRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQ 458
             +   +L  E +   ++ E      +E+E+ +EEL  +L   +E LE       E +E+
Sbjct: 805 AERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEE 864

Query: 459 RIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAY 518
                  +++     E ELK+ EEE ++L +++   +   ++L      L +   EL A 
Sbjct: 865 LEELEAEKEE----LEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAK 920

Query: 519 MESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKV 578
           +E +L+ E  E      E  E      T+++  +   ++E+E +     +A  E   ++ 
Sbjct: 921 LE-RLEVELPELEEELEEEYEDTL--ETELEREIERLEEEIEALGPVNLRAIEEYEEVEE 977

Query: 579 AATSLQSELEREKSALAAIRQR 600
               L+S+ E  + A   + + 
Sbjct: 978 RYEELKSQREDLEEAKEKLLEV 999

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.9 bits (156), Expect = 3e-10
 Identities = 63/349 (18%), Positives = 139/349 (39%), Gaps = 14/349 (4%)

Query: 404  ASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAA 463
             S + E+   +++ EE I   +E+E+ + EL   L   ++ LE       E  EQ     
Sbjct: 669  NSSILERRREIEELEEKI---EELEEKIAELEKALAELRKELEEL----EEELEQLRKEL 721

Query: 464  MARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELS---AYME 520
                +      K+L + E E+++L ++I       ++L+     L +   E     A  E
Sbjct: 722  EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781

Query: 521  SKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAA 580
            ++++E   +      EL+   R+   +++A +    +E   ++  +E     +   +   
Sbjct: 782  AEIEELEAQIEQLKEELKA-LREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840

Query: 581  TSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELP 640
              L+ ++E     + ++          +  LE+EL+   +E A ++      R +  EL 
Sbjct: 841  EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900

Query: 641  KQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTA-ARKEIEAARASE 699
            ++L+    +  + +   +   E+L + +   E  +     ++ RL+      +E A A E
Sbjct: 901  EELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALE 960

Query: 700  KLALAAIKALQESESAQRTDDVDSPTGVTL-SLEEYYELSKRAHEAEEQ 747
                   +  +     +  + +     V L ++EEY EL +R      Q
Sbjct: 961  NKIEDDEEEARR-RLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQ 1008

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 63.6 bits (154), Expect = 4e-10
 Identities = 119/551 (21%), Positives = 227/551 (41%), Gaps = 41/551 (7%)

Query: 277  AHRMQTVERRKYVEQ-ELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNL 335
            A + + V + + + + E  R  E   +  +  +A E  K +  K+ +  K+  EE K + 
Sbjct: 1181 ARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKK-AEEAKKDA 1239

Query: 336  ERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDE 395
            E A+  E + + + E+ K     M       A++ A    E  KA  +    E K   + 
Sbjct: 1240 EEAKKAE-EERNNEEIRKFEEARMAHFARRQAAIKAE---EARKADELKKAEEKKKADEA 1295

Query: 396  VESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEA 455
             ++  K  A    +K    KKA+EA   ++E +K  +    +    K++ E+A A   EA
Sbjct: 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEA-EA 1354

Query: 456  EEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAEL 515
                  AA  + + +   ++E K+  +  +K  ++   A + + K +       +LK   
Sbjct: 1355 AADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELK--- 1411

Query: 516  SAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNC 575
             A    K  +E+ ++     + +E ++K         A   K+ +E K   E+A      
Sbjct: 1412 KAAAAKKKADEAKKKAEEKKKADEAKKK---------AEEAKKADEAKKKAEEAKKAEEA 1462

Query: 576  LKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREK 635
             K A        E  K A  A ++ E       A  +AE  + +++ A    K  EA++K
Sbjct: 1463 KKKA--------EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA---KKAAEAKKK 1511

Query: 636  TVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAA 695
              E  K  +  A++AD+AK   +A   +  K  EE ++A       E +    +K+ E A
Sbjct: 1512 ADEAKKAEE--AKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEA 1569

Query: 696  RASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANM--RVV 753
            + +E+    A++  +E++ A+     +         +   E +K+A EA+ +A    +  
Sbjct: 1570 KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE 1629

Query: 754  AAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRA 813
                ++E  K  E    ++ EE+ K     +E  K+   +  K  E      +E +K   
Sbjct: 1630 EEKKKVEQLKKKEAEEKKKAEELKKA----EEENKIKAAEEAKKAEEDKKKAEEAKK--- 1682

Query: 814  EHEQRRKAGES 824
              E  +KA E+
Sbjct: 1683 AEEDEKKAAEA 1693

Length = 2084

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 63.2 bits (154), Expect = 6e-10
 Identities = 89/434 (20%), Positives = 177/434 (40%), Gaps = 76/434 (17%)

Query: 283 VERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEE 342
            ERRK +E+    S     +Y++R E AE    +  + L++ + L+EEL+  LE+ + + 
Sbjct: 155 EERRKLIEEAAGVS-----KYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQA 209

Query: 343 HQAKQDSEL-AKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRK 401
            +A++  EL A+LR                  +L +  A+      EL+ +++E+  L +
Sbjct: 210 EKAERYQELKAELR----------------ELELALLLAKLKELRKELEELEEELSRLEE 253

Query: 402 DYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIG 461
           +   L  E + A K+ EE  S  +E+ + +EEL  EL+  KE +E      LE E   + 
Sbjct: 254 ELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEE-----LEGEISLL- 307

Query: 462 AAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMES 521
                        + L++ E EL++L +++   K+    L          K EL      
Sbjct: 308 ------------RERLEELENELEELEERLEELKEKIEAL----------KEELEERETL 345

Query: 522 KLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAAT 581
             + E                    +++ A    +++L  +   +E+             
Sbjct: 346 LEELEQLLA----------------ELEEAKEELEEKLSALLEELEELFEA--------- 380

Query: 582 SLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPK 641
            L+ EL   ++ LA IR         + SLE  L+R    +  ++ + KE   +  EL  
Sbjct: 381 -LREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQT 439

Query: 642 QLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKL 701
           +L+   +E ++ +   +   + L + + E  + +     +E  L++    ++   A ++ 
Sbjct: 440 ELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA 499

Query: 702 ALAAIKALQESESA 715
           +      L+  ES 
Sbjct: 500 SQGVRAVLEALESG 513

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 61.2 bits (149), Expect = 2e-09
 Identities = 62/285 (21%), Positives = 128/285 (44%), Gaps = 14/285 (4%)

Query: 536 ELEEPERKTHTDIQAA-VASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSAL 594
           EL+   R+    +    +   ++ELEE++  +++A  E+  L      L+ +LE  +  +
Sbjct: 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV 276

Query: 595 AAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAK 654
           + + +        +  L+ EL    +EI+ ++ +++  RE+   L +QL+    + ++ +
Sbjct: 277 SELEEE-------IEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE 329

Query: 655 SLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESES 714
           S      EEL + +E+ E+ K    ++E+ L     E+E   +  +     ++ L+ S+ 
Sbjct: 330 SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR-SKV 388

Query: 715 AQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLE 774
           AQ    + S       LE   E  +   E  +Q    +   + ++E A+  EL+    LE
Sbjct: 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQ---EIEELLKKLEEAELKELQ--AELE 443

Query: 775 EVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRR 819
           E+ +E+   +E L+   E  E+ +E     EQ L     E  Q +
Sbjct: 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 60.9 bits (148), Expect = 3e-09
 Identities = 67/335 (20%), Positives = 143/335 (42%), Gaps = 17/335 (5%)

Query: 416 KAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEK 475
           K E+A+   +EVE+ +E L + +   ++ LE       +AE  +      R+ + +   K
Sbjct: 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLK 230

Query: 476 ELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNG 535
           E +  E + + + +Q+     L  +L+  +  + +L+  L   +E  L+E + +      
Sbjct: 231 EKEALERQKEAIERQL---ASLEEELEKLTEEISELEKRLEE-IEQLLEELNKKIKDLGE 286

Query: 536 ELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALA 595
           E +   ++   +++A +AS ++ + E +  +E A   +  L+     L +E+E  +  + 
Sbjct: 287 EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE 346

Query: 596 AIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKS 655
             R+R    +   A L+ EL+  R+E+  V  +  E R++  +  ++L+   +E ++ K 
Sbjct: 347 EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406

Query: 656 LAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLA---LAAIKALQES 712
                 EEL +  EE     A  + IE+++    +E E      K     L  + A    
Sbjct: 407 ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK 466

Query: 713 ESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQ 747
              +  D            EEY  + K   + + +
Sbjct: 467 YEQELYDLK----------EEYDRVEKELSKLQRE 491

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 60.5 bits (147), Expect = 3e-09
 Identities = 102/558 (18%), Positives = 204/558 (36%), Gaps = 81/558 (14%)

Query: 284 ERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEH 343
           E  K  E+EL      + E  ++ E  E    ++ +E+++ +  +E L+  LE  +    
Sbjct: 267 EALKIREEELRELERLLEELEEKIERLE----ELEREIEELEEELEGLRALLEELEELLE 322

Query: 344 QAKQDSELAKLRVEEMEQGIAD--DASVAARAQLEVAKARHVAAVSELKSVKDEVESLRK 401
           + K   E  +   E++E+  ++  + +       ++ + R       L+ ++ E+E   +
Sbjct: 323 KLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALE 382

Query: 402 DYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIG 461
               L        ++  E  +A +E+++ +EEL  EL   +  LE       + EEQ   
Sbjct: 383 RLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442

Query: 462 AAMARDQ------------------DSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDT 503
                                         ++ L+  E EL++L +++   K+       
Sbjct: 443 LESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAE---- 498

Query: 504 ASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVK 563
                  L+ E+      +L++E  E      EL E E     +++  +   +  LEE++
Sbjct: 499 -------LREEI-----EELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELE 546

Query: 564 LNIEKATAEVNCLKVA-ATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEI 622
              EK   +    ++        EL+     L  +R R           + EL+  R  +
Sbjct: 547 ELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTR-----------KEELEELRERL 595

Query: 623 ALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIE 682
             ++ K KE  E+  +L + LQ  + E  +A++  + A EEL    E+          ++
Sbjct: 596 KELKKKLKELEERLSQLEELLQ--SLELSEAENELEEAEEELESELEKLNLQAELEELLQ 653

Query: 683 SRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAH 742
           + L    +++E   A  +  L  I+  ++ E                             
Sbjct: 654 AALEELEEKVEELEAEIRRELQRIENEEQLEEKL-------------------------- 687

Query: 743 EAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKL 802
           E  EQ    +     ++E          + +EE+    A   E LK  +EK EKA E   
Sbjct: 688 EELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKA-ELEELKKELEKLEKALELLE 746

Query: 803 GIEQELRKWRAEHEQRRK 820
            + ++L K     +  R 
Sbjct: 747 ELREKLGKAGLRADILRN 764

Length = 908

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 60.4 bits (147), Expect = 4e-09
 Identities = 124/574 (21%), Positives = 233/574 (40%), Gaps = 78/574 (13%)

Query: 302 EYRKRSEAAEVAKNQVLKE----LDQTKRLVE-------------------ELKLNLERA 338
           EYR+R+  A +   +VL +    LDQ K  +E                   EL   +ER 
Sbjct: 166 EYRERASDARLGVERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERY 225

Query: 339 QTEEHQAKQDSELAKLRVEEMEQGIADDASV-AARAQLEVAKARHVAAVSELKSVKDEVE 397
           + +  QA++  + A   +EE E+   +  ++ A    L    A       E + + +EV 
Sbjct: 226 EEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIA---ETEREREELAEEVR 282

Query: 398 SLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEE 457
            LR+    L  E+D  + +A    + ++ VE   EEL       ++ LE          E
Sbjct: 283 DLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLE----------E 332

Query: 458 QRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSA 517
            R+ A    ++   L E +    EE  ++L ++   A +L S+L+ A   + D + E+  
Sbjct: 333 CRVAAQAHNEEAESLRE-DADDLEERAEELREE---AAELESELEEAREAVEDRREEIEE 388

Query: 518 YMESKLKEESNEEGHSNGELEEPE------RKTHTDIQAAVASAKKELEEVKLNIEKAT- 570
            +E +++E     G +  +L   E      R+   +++   A  +  L   +  +E+A  
Sbjct: 389 -LEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEA 447

Query: 571 --AEVNC------------------LKVAATSLQSELEREKSALAAIRQREGMASVAVAS 610
                 C                   +     L++ELE  +  +  + +R   A   V  
Sbjct: 448 LLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLV-E 506

Query: 611 LEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEE 670
            E  ++R       ++    E RE   E  ++ +   + A + ++ A+   E   +A+EE
Sbjct: 507 AEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEE 566

Query: 671 AEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLS 730
           AE+A+   + + S+L   ++ IE+      L LAAI   ++     R             
Sbjct: 567 AEEAREEVAELNSKLAELKERIESLERIRTL-LAAIADAEDEIERLREKREALAELNDER 625

Query: 731 LEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVA 790
            E   E  +R  E E + +       ++IE A+  + R+ E LE+V +++   +E  +  
Sbjct: 626 RERLAEKRERKRELEAEFDE------ARIEEAREDKERAEEYLEQVEEKLDELREE-RDD 678

Query: 791 MEKAEKAKEGKLGIEQELRKWRAEHEQRRKAGES 824
           ++    A E +L   +ELR+ R   E R +A E+
Sbjct: 679 LQAEIGAVENELEELEELRERREALENRVEALEA 712

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.0 bits (143), Expect = 9e-09
 Identities = 68/347 (19%), Positives = 135/347 (38%), Gaps = 28/347 (8%)

Query: 474 EKELKQAEEELQKLTQQILSAKDLRSKLDTASALL----------LDLKAELSAYMESKL 523
           ++  ++AE +L++  + +   +DL  +L+     L           +LKAEL     + L
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230

Query: 524 KEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSL 583
             +         ELEE E +  + ++  +   ++ELEE +  IE+  +E+  L+     L
Sbjct: 231 LAKLK---ELRKELEELEEEL-SRLEEELEELQEELEEAEKEIEELKSELEELREELEEL 286

Query: 584 QSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQL 643
           Q EL   K  +  +     +    +  LE EL+     +  ++ K +  +E+  E    L
Sbjct: 287 QEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLL 346

Query: 644 QVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLAL 703
           +   Q   + +   +   E+L    EE E+         + L A   EI       K  +
Sbjct: 347 EELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREI 406

Query: 704 AAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAK 763
            +++   E  S +              LE+  E  K      E+    +     ++E  +
Sbjct: 407 ESLEERLERLSER--------------LEDLKEELKELEAELEELQTELEELNEELEELE 452

Query: 764 ASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRK 810
                  +RL+E+ +E+A  +E L+   ++    +     +E E R 
Sbjct: 453 EQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA 499

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 58.2 bits (141), Expect = 2e-08
 Identities = 97/551 (17%), Positives = 212/551 (38%), Gaps = 33/551 (5%)

Query: 281 QTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQT 340
           +  E +K  E + E+  EE+ +  +  E       +  + L++ K  + E++     A  
Sbjct: 211 ELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALK 270

Query: 341 EEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAA-----VSELKSVKDE 395
              +  ++ E     +EE  + + +        + E+   R +       + +LKS+++ 
Sbjct: 271 IREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEER 330

Query: 396 VESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEA 455
           +E L +    L +E +   ++  E     +E  K +EE   EL    E          EA
Sbjct: 331 LEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEA 390

Query: 456 EEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAEL 515
            ++               ++EL++ E+EL++L +++   ++   KL+     L   +  +
Sbjct: 391 IQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMI 450

Query: 516 SAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNC 575
           +    +  K     +       +E       +++       +E EE +L  E    E   
Sbjct: 451 AELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELE-KE 509

Query: 576 LKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREK 635
           L+     L   LE E++    + ++       +  LE   ++ + +   ++ + ++  ++
Sbjct: 510 LRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQ--LKEELRQLEDR 567

Query: 636 TVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAA 695
             EL + L+       +         EEL + +E  ++ K     +E RL+   + +++ 
Sbjct: 568 LQELKELLEELRLLRTR--------KEELEELRERLKELKKKLKELEERLSQLEELLQSL 619

Query: 696 RASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAA 755
             SE       +A +E ES                L    EL +    A E+   +V   
Sbjct: 620 ELSEA-ENELEEAEEELESELEK------------LNLQAELEELLQAALEELEEKVEEL 666

Query: 756 ISQIEVAKASELRSLERLEEVNKEIA---TRKEALKVAMEKAEKAKEGKLGIEQELRKWR 812
            ++I   +   + + E+LEE  +E+       E L+  +E+  K       + +EL   +
Sbjct: 667 EAEIR-RELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRK 725

Query: 813 AEHEQRRKAGE 823
           AE E+ +K  E
Sbjct: 726 AELEELKKELE 736

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.0 bits (138), Expect = 4e-08
 Identities = 105/549 (19%), Positives = 220/549 (40%), Gaps = 59/549 (10%)

Query: 284 ERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEH 343
           ER + +++EL+    E+ E +   E       ++ ++L++ +  ++EL+  L   Q E  
Sbjct: 418 ERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQ 477

Query: 344 QAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARH---VAAVSELKSVKDEVE--- 397
           + +++    + R++ +E        V  RA LE  ++        V+EL  VK++ E   
Sbjct: 478 RLEKELSSLEARLDRLEAEQRASQGV--RAVLEALESGLPGVYGPVAELIKVKEKYETAL 535

Query: 398 --SLRKDYASLVTEKDIAVKKAEEAISASKE-VEKTVEELTIELIATKESLESAHAAHLE 454
             +L     ++V E +     A++AI   KE        L ++ I    SL+S  A    
Sbjct: 536 EAALGNRLQAVVVENEEV---AKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAA---- 588

Query: 455 AEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAE 514
                +G A            +L   + + +   + +L    +   L+ A  L   L+ +
Sbjct: 589 --PGFLGLAS-----------DLIDFDPKYEPAVRFVLGDTLVVDDLEQARRLARKLRIK 635

Query: 515 LSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVN 574
               + +   +     G   G      +++    +  +   ++EL E++  +EK   E+ 
Sbjct: 636 YR--IVTLDGDLVEPSGSITGG--SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELK 691

Query: 575 CLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEARE 634
            LK    SL+  LE  +  L  + ++       +A+LE EL++ +S +  ++ + +E  E
Sbjct: 692 SLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEE 751

Query: 635 KTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEA 694
           +  EL ++L+   +E +      + A  +L +  EE E+ +         L    +E+E 
Sbjct: 752 ELEELQERLEELEEELES----LEEALAKLKEEIEELEEKRQ-------ALQEELEELEE 800

Query: 695 ARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQAN---MR 751
                +  L A++   ES   +R              +E  EL +   E EE+ +     
Sbjct: 801 ELEEAERRLDALERELESLEQRRER----------LEQEIEELEEEIEELEEKLDELEEE 850

Query: 752 VVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKW 811
           +     ++E  K          EE+  E+   +E  +   E+  + +     +++E+ K 
Sbjct: 851 LEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL 910

Query: 812 RAEHEQRRK 820
           R   E+   
Sbjct: 911 RERLEELEA 919

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.4 bits (134), Expect = 1e-07
 Identities = 104/614 (16%), Positives = 220/614 (35%), Gaps = 74/614 (12%)

Query: 272 IVDWKAHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQT------- 324
           I   +  +    ER   +E++LE    ++ E   + +       ++ ++L++        
Sbjct: 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356

Query: 325 --------------KRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVA 370
                         +  +EEL+  LE  +++  Q +         +E +E  +       
Sbjct: 357 EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416

Query: 371 ARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKT 430
            R Q E+ +       +ELK ++ E+E L ++   L  E        E    A +E+ + 
Sbjct: 417 ERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL-------ERLEEALEELREE 469

Query: 431 VEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQ 490
           +EE    L A +  L     A L++ E+         +      K        L  L++ 
Sbjct: 470 LEEAEQALDAAERELAQL-QARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSEL 528

Query: 491 ILSAKDLRSKLDTASALLLD--LKAELSAYME--SKLKEESN-------EEGHSNGELEE 539
           I   +   + ++ A    L   +   L+A  +  + LK+           +     E++ 
Sbjct: 529 ISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQG 588

Query: 540 PERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIR- 598
            +R+   +I+  +  A K+L +    + KA + +    +    L + LE  K      R 
Sbjct: 589 NDREILKNIEGFLGVA-KDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRI 647

Query: 599 --------QREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEA 650
                   +  G+ +   A   + +   R EI  ++ K +E  EK  EL K L    +E 
Sbjct: 648 VTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKEL 707

Query: 651 D-------QAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLAL 703
           +       Q +   +    ++   +++  + +A    +E R+    KE+    A  +   
Sbjct: 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767

Query: 704 AAI------KALQESESAQRTDDVDSPTGVTLSLE--------EYYELSKRAHEAEEQAN 749
             +       A  E+E  +    ++       +L         E   L++ A    E+  
Sbjct: 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE 827

Query: 750 M---RVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQ 806
               R+ A   ++E  +       E +E +  EI   +E ++    + E     +  +E+
Sbjct: 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE 887

Query: 807 ELRKWRAEHEQRRK 820
            L   R+E E+  +
Sbjct: 888 ALALLRSELEELSE 901

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 55.5 bits (134), Expect = 1e-07
 Identities = 86/438 (19%), Positives = 173/438 (39%), Gaps = 76/438 (17%)

Query: 280 MQTVERRKYVEQ---------ELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEE 330
           M  VERRK +++         + E++ EE+ E  +  E  ++  ++  ++L+        
Sbjct: 150 MSPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLE-------- 201

Query: 331 LKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELK 390
            +L  ER + E +QA            E E         A   Q E  + +  +   EL+
Sbjct: 202 -RLRREREKAERYQALLK------EKREYEGYELLKEKEALERQKEAIERQLASLEEELE 254

Query: 391 SVKDEVESLRKDYASLVTE-KDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAH 449
            + +E+  L K    +    +++  K  +        V++ + EL  E+     SLE + 
Sbjct: 255 KLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEI----ASLERSI 310

Query: 450 AAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLL 509
           A      E                E+ L + E E+ KL  +I   ++L  +++       
Sbjct: 311 AEKERELEDA--------------EERLAKLEAEIDKLLAEI---EELEREIEEERKRRD 353

Query: 510 DLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKA 569
            L  E +     +LKEE  +      ELEE        +    A  + EL++ +  +EK 
Sbjct: 354 KLTEEYA-----ELKEELED---LRAELEE--------VDKEFAETRDELKDYREKLEKL 397

Query: 570 TAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKE 629
             E+N LK     LQ EL+R    LA +               A +    ++I  ++ ++
Sbjct: 398 KREINELKRELDRLQEELQRLSEELADLN--------------AAIAGIEAKINELEEEK 443

Query: 630 KEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAAR 689
           ++   +  +   +L+  A +  + +       EE  + ++E  + +   +  E++  A+ 
Sbjct: 444 EDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503

Query: 690 KEIEAARASEKLALAAIK 707
           + +   RA E++  A+I+
Sbjct: 504 ERVRGGRAVEEVLKASIQ 521

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 55.5 bits (134), Expect = 1e-07
 Identities = 85/413 (20%), Positives = 161/413 (38%), Gaps = 24/413 (5%)

Query: 422 SASKEVEKTVEELT-IELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQA 480
           S  KE ++ ++EL  +E       L        +A+ + +   ++   +      E  + 
Sbjct: 151 SKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEE 210

Query: 481 E-EELQKLT--QQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSN-GE 536
           E +EL+KL   Q+    ++L  +++     L +L+ E     E K +    E       +
Sbjct: 211 ELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALK 270

Query: 537 LEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAA 596
           + E E +    +   +    + LEE++  IE+   E+  L+     L+  LE+ KS    
Sbjct: 271 IREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEER 330

Query: 597 IRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPK----------QLQVA 646
           + + E       + LE   +       L++ + KE  E+  EL K          QL+ A
Sbjct: 331 LEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEA 390

Query: 647 AQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAI 706
            QE  +  +   AA EE+ +  EE E+           L    K++E      +     I
Sbjct: 391 IQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMI 450

Query: 707 KALQESESAQRTDDVDSPTGVTLSLEEYYE-----LSKRAHEAEEQANMRVVAA--ISQI 759
             L  +         + P      L E YE     L +     +E+A +R        ++
Sbjct: 451 AELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKEL 510

Query: 760 EVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKE--GKLGIEQELRK 810
              +   +  LE  E + +E+  + E L+  +E+ E+ KE      +++ELR+
Sbjct: 511 RELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQ 563

Length = 908

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 55.1 bits (133), Expect = 2e-07
 Identities = 103/536 (19%), Positives = 190/536 (35%), Gaps = 80/536 (14%)

Query: 322 DQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKAR 381
           D T      L          + QA +  +     +E++++      S+  R Q       
Sbjct: 214 DGTVPPKSRLNPQDVEHWIADIQALRAIQKVAPEIEKLQEDFEQLLSLELRLQH--LHGE 271

Query: 382 HVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIAT 441
            VA    L   ++E +  +      +   +  +K+A + ++      + +     +L A 
Sbjct: 272 LVADEERLAEEQEERQEAKNRLRQQLRTLEDQLKEARDELN------QELSAANAKLAAD 325

Query: 442 KESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKL 501
           +  LE         E+  I    A          EL++ E  L  LT +    +D++ K 
Sbjct: 326 RSELELLEDQKGAFEDADIEQLQADLDQLPSIRSELEEVEARLDALTGKH---QDVQRKY 382

Query: 502 DT-ASALLLDLKAELSAYMESKLK-EESNEEGHSNGELEEPERKTHTDIQAAVASAKKEL 559
           +     +   L+ +L    E      E  +   +             D+QA  +  +++L
Sbjct: 383 ERLKQKIKEQLERDLEKNNERLAAIREEKDRQKA---------AIEEDLQALESQLRQQL 433

Query: 560 EEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTR 619
           E  KL   +   E          L+  L R K  L +          A A+ E       
Sbjct: 434 EAGKLEFNEEEYE----------LELRLGRLKQRLDS----------ATATPEELEQLEI 473

Query: 620 SEIALVQMKEK-EAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGA 678
           ++ AL + +E+ E  E  VE   QLQ   ++  + +  A    E L +A+    Q +   
Sbjct: 474 NDEALEKAQEEQEQAEANVE---QLQSELRQLRKRRDEAL---EALQRAERRLLQLRQAL 527

Query: 679 STIESRLTAARKEI------EAARASEKLALAAIKALQESESAQRTD---------DVDS 723
             +E +L+     +      EA    E +       L E     RTD         D D+
Sbjct: 528 DELELQLSPQAGSLLHFLRNEAPGWEESIGKVISPELLE-----RTDLDPQLVEGSDSDT 582

Query: 724 PTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATR 783
             GV+L L+        A+E E +  ++      Q  VAK  +    E+L + N E+  +
Sbjct: 583 LYGVSLDLQRLDVPDYAANETELRERLQQAEEALQSAVAKQKQAE--EQLVQANAELEEQ 640

Query: 784 KEALKVAMEKAEKAKE--GKLGIEQE-----LRKWRAEHEQRRKAGESGQGVNSTK 832
           K A   A    ++A+    +L  EQ+     L    AE   +++A    + +++  
Sbjct: 641 KRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAER--KQQAETQLRQLDAQL 694

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.5 bits (129), Expect = 5e-07
 Identities = 73/366 (19%), Positives = 147/366 (40%), Gaps = 33/366 (9%)

Query: 260 ESVKEVVSKFGGIVDWKAHRMQTVERRK-----YVEQELERSHEEMPEYRKRSEAAEVAK 314
           E V+E + +   I+D K  +++ + R +     Y     E+   E  E  K  EA E  K
Sbjct: 180 EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQK 239

Query: 315 NQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQ 374
             + ++L   +  +E+L   +   +    + +Q  E    +++++     ++  +  + +
Sbjct: 240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDL----GEEEQLRVKEK 295

Query: 375 LEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEEL 434
           +   +A   +    +   + E+E   +  A L  E D   K   E     +E+E+ +EE 
Sbjct: 296 IGELEAEIASLERSIAEKERELEDAEERLAKLEAEID---KLLAEI----EELEREIEEE 348

Query: 435 TIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSA 494
                   E         LE     +      D++      ELK   E+L+KL ++I   
Sbjct: 349 RKRRDKLTEEYAEL-KEELEDLRAELEEV---DKEFAETRDELKDYREKLEKLKREINEL 404

Query: 495 KDLRSKLDT----ASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQA 550
           K    +L       S  L DL A ++  +E+K+ E   E+     E+++ E K    + A
Sbjct: 405 KRELDRLQEELQRLSEELADLNAAIAG-IEAKINELEEEKEDKALEIKKQEWKLEQ-LAA 462

Query: 551 AVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVAS 610
            ++  ++EL ++K   ++   E+       + LQ EL   ++   A  +R          
Sbjct: 463 DLSKYEQELYDLKEEYDRVEKEL-------SKLQRELAEAEAQARASEERVRGGRAVEEV 515

Query: 611 LEAELD 616
           L+A + 
Sbjct: 516 LKASIQ 521

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 52.8 bits (126), Expect = 8e-07
 Identities = 118/561 (21%), Positives = 223/561 (39%), Gaps = 63/561 (11%)

Query: 336  ERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDE 395
            +    E+++A + +E A  + EE ++     A  A +A+    KA       E +    +
Sbjct: 1080 DFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEAR----K 1135

Query: 396  VESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEA 455
             E  RK   +   E    V+ A +A  A K  E    E   +  A +++ E   A  L  
Sbjct: 1136 AEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRK 1195

Query: 456  EEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAEL 515
             E    A  AR  +     +E ++AE+   K  + +  A++ +   + A       KAE 
Sbjct: 1196 AEDARKAEAARKAEEERKAEEARKAEDA--KKAEAVKKAEEAKKDAEEAK------KAE- 1246

Query: 516  SAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAV-ASAKKELEEVKLNIEKATAEVN 574
                    +E +NEE     + EE         QAA+ A   ++ +E+K   EK  A+  
Sbjct: 1247 --------EERNNEEIR---KFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD-- 1293

Query: 575  CLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEARE 634
                                   ++ E       A  +AE  +   E    + K +EA++
Sbjct: 1294 ---------------------EAKKAEEKKKADEAKKKAEEAKKADEA---KKKAEEAKK 1329

Query: 635  KTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEA 694
            K     K+ + A + A+ AK+ A+AA +E   A+E+AE A+      + +  AA+K+ E 
Sbjct: 1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE 1389

Query: 695  ARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVA 754
             + +++    A       E  ++ D++          +E  + ++   +A+E       A
Sbjct: 1390 KKKADEAKKKA------EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA 1443

Query: 755  AISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRK---W 811
              +     KA E +  E  ++  +E A + +  K   E+A+KA E K   E+  +K    
Sbjct: 1444 KKADEAKKKAEEAKKAEEAKKKAEE-AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA 1502

Query: 812  RAEHEQRRKAGESGQGVNSTKIPTPSLEEKKDSKKYDRMSSAAAVPNMTSPKASMQGSNT 871
            +   E ++KA E+ +   + K      ++ +++KK D    A         K + +    
Sbjct: 1503 KKAAEAKKKADEAKKAEEAKK--ADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKA 1560

Query: 872  ETESSPEAKGPKKKKKSLFPR 892
            E +   E     ++ K++  R
Sbjct: 1561 EEKKKAEEAKKAEEDKNMALR 1581

Length = 2084

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 52.8 bits (127), Expect = 8e-07
 Identities = 128/549 (23%), Positives = 226/549 (41%), Gaps = 73/549 (13%)

Query: 319 KELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVA 378
           K L +  + ++     LE+        ++  +  +  +EE+ + I + +S     + E+ 
Sbjct: 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELE 224

Query: 379 KARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIEL 438
           K      V EL+ +K+E+E L K+  SL   K    +K EE I   +E+E+ +EEL  E+
Sbjct: 225 KLE--KEVKELEELKEEIEELEKELESLEGSK----RKLEEKI---RELEERIEELKKEI 275

Query: 439 IATKESLESAHAAHLEAEEQRIGAAMARDQDSHLW--EKELKQAEEELQKLTQQILSAKD 496
              +E ++       +AEE    +    +    L   EK L + EEE+  + ++I   ++
Sbjct: 276 EELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEE 335

Query: 497 LRSKLDTASALLLDLKAELS-------AYMESKLKEESNEEGHSNGELEEPERKTHTDIQ 549
              +L+     L +L+  L         Y E+K K+E  E          PE+     ++
Sbjct: 336 KEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEK-----LE 390

Query: 550 AAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVA 609
             +   +K  EE++  I K TA +         L+ E++  K A+  +++ +G   V   
Sbjct: 391 KELEELEKAKEEIEEEISKITARIG-------ELKKEIKELKKAIEELKKAKGKCPVCGR 443

Query: 610 SLE------------AELDRTRSEIALVQMKEKEAREKTVELPKQL----------QVAA 647
            L             AEL R   E+  ++ KE++ R++  EL K L          ++A 
Sbjct: 444 ELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAE 503

Query: 648 QEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIK 707
           Q  +  + L +   EEL K  EE E+ K     ++  + + +KE+E     +K      K
Sbjct: 504 QLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEK 563

Query: 708 ALQESESAQRT----------DDVDSPTGVTLSLEEYY----ELSKRAHEAEEQANMRVV 753
            L E E               + V+        LE +Y    EL     E E +      
Sbjct: 564 KLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKEL-- 621

Query: 754 AAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAM--EKAEKAKEGKLGIEQELRKW 811
               + E+ KA E   L   E+  +E+    E L+     E+ E+ +E  L + +EL   
Sbjct: 622 -KKLEEELDKAFE--ELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGL 678

Query: 812 RAEHEQRRK 820
           RAE E+  K
Sbjct: 679 RAELEELEK 687

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.4 bits (126), Expect = 1e-06
 Identities = 48/293 (16%), Positives = 121/293 (41%), Gaps = 17/293 (5%)

Query: 416 KAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSH---- 471
                I  S+     ++ L   L   K  L S   + L   E R+        D+     
Sbjct: 661 APRGGILFSRSEPAELQRLRERLEGLKRELSSL-QSELRRIENRLDELSQELSDASRKIG 719

Query: 472 LWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEG 531
             EKE++Q E+E +KL +++   ++L   L +    + ++K+EL    E++++E   +  
Sbjct: 720 EIEKEIEQLEQEEEKLKERL---EELEEDLSSLEQEIENVKSELKEL-EARIEELEEDLH 775

Query: 532 HSNGELEEPERKTH----TDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSEL 587
                L + E +       +IQA ++  ++E+  ++  + +   ++N L +    L+ E+
Sbjct: 776 KLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI 835

Query: 588 EREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAA 647
           +  +     ++++       + +L  + +    E+  ++   ++   +  +L K+     
Sbjct: 836 QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELE 895

Query: 648 QEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEK 700
            +  + +   +    ++ K ++   + KA    +E  L     EIE  +  ++
Sbjct: 896 AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL----SEIEDPKGEDE 944

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 51.6 bits (124), Expect = 2e-06
 Identities = 105/604 (17%), Positives = 195/604 (32%), Gaps = 118/604 (19%)

Query: 291 QELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSE 350
           Q L    +  PE  K  E  E     +   L      +   +  L   Q E  +AK    
Sbjct: 236 QALRAIQKVAPEIEKLQEDFE-QLLSLELRLQHLHGELVADEERLAEEQEERQEAKNRLR 294

Query: 351 LA--------KLRVEEMEQGI--ADDASVAARAQLEVAKARH-----------VAAVSEL 389
                     K   +E+ Q +  A+    A R++LE+ + +             A + +L
Sbjct: 295 QQLRTLEDQLKEARDELNQELSAANAKLAADRSELELLEDQKGAFEDADIEQLQADLDQL 354

Query: 390 KSVKDEVESLRKDYASLVT---------EKDIAVKKAE--EAISASKEVEKTVEELTIEL 438
            S++ E+E +     +L           E+     K +    +  + E    + E     
Sbjct: 355 PSIRSELEEVEARLDALTGKHQDVQRKYERLKQKIKEQLERDLEKNNERLAAIREEKDRQ 414

Query: 439 IATKESLESA---------HAAHLEAEEQRIGAAMARDQDSHL----------------W 473
            A  E    A          A  LE  E+     +   +                     
Sbjct: 415 KAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRLKQRLDSATATPEELEQLEIN 474

Query: 474 EKELKQAEEELQKLTQQILSAKDLRSKLDT-----------ASALLLDLKAELSAYME-- 520
           ++ L++A+EE ++    +   +    +L             A   LL L+  L       
Sbjct: 475 DEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEALQRAERRLLQLRQALDELELQL 534

Query: 521 --------SKLKEESNEEGHSNGELEEPERKTHTDIQAAV--ASAKKELEEVKLNIEKAT 570
                     L+ E+     S G++  PE    TD+   +   S    L  V L++++  
Sbjct: 535 SPQAGSLLHFLRNEAPGWEESIGKVISPELLERTDLDPQLVEGSDSDTLYGVSLDLQR-- 592

Query: 571 AEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEK 630
            +V       T L+  L++ + AL +   ++  A   +    AEL+  +   A  +   K
Sbjct: 593 LDVPDYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALK 652

Query: 631 EAREKTVELPKQLQVAAQEADQA-KSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAAR 689
           +AR     L  + Q    + + A     Q A  +L +   + +Q                
Sbjct: 653 QARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQ---------- 702

Query: 690 KEIEAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQAN 749
                         A ++AL++     RT+ +     V   L+        A EA     
Sbjct: 703 --------------AFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQA 748

Query: 750 MRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELR 809
               A + +++     EL SL+      KE+  + E L+  +E+             E+R
Sbjct: 749 K---ARLKELKKQYDRELASLDVDPNTVKELKRQIEELETTIERIAVR-------RPEVR 798

Query: 810 KWRA 813
           ++RA
Sbjct: 799 EYRA 802

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.9 bits (122), Expect = 3e-06
 Identities = 104/589 (17%), Positives = 207/589 (35%), Gaps = 47/589 (7%)

Query: 282 TVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTE 341
            + + K + +ELE   EE+    +  E  +    +  KE+++ K  +EEL+  LE  Q E
Sbjct: 230 LLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEE 289

Query: 342 EHQAKQ-----DSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEV 396
             + K+     + E++ LR    E     +       +L+         + E +++ +E+
Sbjct: 290 LLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEEL 349

Query: 397 ESLRKDYASLVTEKDIAVKKAEEAI-SASKEVEKTVEELTIE----------LIATKESL 445
           E L  +      E +  +    E +    + + + + EL  E          L    ESL
Sbjct: 350 EQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESL 409

Query: 446 ESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTAS 505
           E       E  E         + +    + EL++  EEL++L +Q+   +D   +L+   
Sbjct: 410 EERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELEREL 469

Query: 506 ALLLDLKAELSAYMESKLK-----EESNEEGHSNGELEEPERKTHTDIQAAVASAKKELE 560
           A L +    L   + S        E           + E        +   VA   K  E
Sbjct: 470 AELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKE 529

Query: 561 EVKLNIEKATAE-----VNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAEL 615
           + +  +E A        V   +  A      L+  K+  A     + +  +     +A  
Sbjct: 530 KYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAP 589

Query: 616 DRTRSEIALVQMKEKEAR--------EKTVELPKQLQVAAQEADQAKSLAQAAGEELHKA 667
                   L+    K              V+  +Q +  A++      +    G+ +  +
Sbjct: 590 GFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRLARKLRIKYRIVTLDGDLVEPS 649

Query: 668 ---------KEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRT 718
                    K  +   K     +E  L     ++E      K     +++L++     R 
Sbjct: 650 GSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELR- 708

Query: 719 DDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNK 778
                   +   LEE         E  EQ   R+     ++E  +       ERLEE+ +
Sbjct: 709 ---RQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEE 765

Query: 779 EIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRRKAGESGQG 827
           E+ + +EAL    E+ E+ +E +  +++EL +   E E+  +  ++ + 
Sbjct: 766 ELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALER 814

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 50.5 bits (120), Expect = 5e-06
 Identities = 96/446 (21%), Positives = 181/446 (40%), Gaps = 21/446 (4%)

Query: 409  EKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQ 468
            + D   K+   A  A++E     EE         E    A  A  +AE+ R      + +
Sbjct: 1078 DFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAE 1137

Query: 469  DSHLWEKELKQAEEELQKLTQQILSAK--DLRSKLDTASALLLDLKAELSAYMESKLKEE 526
            D+   E+  K  + +  ++ ++   A+  +   K + A       KAE     E   K E
Sbjct: 1138 DARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAE 1197

Query: 527  SNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSE 586
               +  +  + EE  +      +A  A   K+ E VK   E         K        E
Sbjct: 1198 DARKAEAARKAEEERKAE----EARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEE 1253

Query: 587  LEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVA 646
            + + + A  A   R   A  A  + +A+  +   E       +K   +K  +  K+    
Sbjct: 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE 1313

Query: 647  AQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAI 706
            A++AD+AK  A+ A ++   AK++AE+AK  A   ++   AA  E EAA    + A    
Sbjct: 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA---- 1369

Query: 707  KALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEV----A 762
               ++ E+ ++ D            +   E  K+A E +++A+    AA ++ +      
Sbjct: 1370 -EKKKEEAKKKADAAKKKAEEKKKAD---EAKKKAEEDKKKADELKKAAAAKKKADEAKK 1425

Query: 763  KASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELR--KWRAEHEQRRK 820
            KA E +  +  ++  +E A + +  K   E+A+KA+E K   E+  +  + + + E+ +K
Sbjct: 1426 KAEEKKKADEAKKKAEE-AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK 1484

Query: 821  AGESGQGVNSTKIPTPSLEEKKDSKK 846
            A E+ +     K      ++  ++KK
Sbjct: 1485 ADEAKKKAEEAKKKADEAKKAAEAKK 1510

Length = 2084

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.9 bits (117), Expect = 1e-05
 Identities = 61/349 (17%), Positives = 126/349 (36%), Gaps = 53/349 (15%)

Query: 474 EKELKQAEEELQKLTQQILSAKDLRSKL-DTASALLLDLKAELSAYMESKLKEESNEEGH 532
             E +Q  E L++  ++    + L  +  +     LL  K  L    E+  ++ ++ E  
Sbjct: 193 IDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEE- 251

Query: 533 SNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATA-EVNCLKVAATSLQSELEREK 591
              ELE+   +  ++++  +   ++ LEE+   I+     E   +K     L++E+   +
Sbjct: 252 ---ELEKLTEEI-SELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLE 307

Query: 592 SALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEAD 651
            ++A   +    A   +A LEAE+D+  +EI               EL ++++   +  D
Sbjct: 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIE--------------ELEREIEEERKRRD 353

Query: 652 QAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQE 711
           +         EEL   + E E+     +     L   R+++E             K  +E
Sbjct: 354 KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE-------------KLKRE 400

Query: 712 SESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLE 771
               +R  D               E  +R  E     N         I   +A      E
Sbjct: 401 INELKRELD------------RLQEELQRLSEELADLNA-------AIAGIEAKINELEE 441

Query: 772 RLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRRK 820
             E+   EI  ++  L+       K ++    +++E  +   E  + ++
Sbjct: 442 EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 49.2 bits (117), Expect = 1e-05
 Identities = 61/448 (13%), Positives = 141/448 (31%), Gaps = 16/448 (3%)

Query: 404 ASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLE-AEEQRIGA 462
            +  + +    K+  + +    E    +     EL   +  L+      LE  + +    
Sbjct: 162 EAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLE 221

Query: 463 AMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESK 522
               +     + K  ++  + LQ+L +      +   +       +L    + +   E +
Sbjct: 222 LEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKE 281

Query: 523 LKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATS 582
            K +  E      E EE  +     ++      +++L+E +  ++K   E+   K     
Sbjct: 282 KKLQEEELKLLAKEEEE-LKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEK----E 336

Query: 583 LQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVE-LPK 641
              ELE+E   L   R+ E      +  L+ +L++   E+   +  E E      +   +
Sbjct: 337 EIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 396

Query: 642 QLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKL 701
           +L++  +E  +AK L + + +E    KEE ++       +E  L   + ++   +   + 
Sbjct: 397 ELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEK 456

Query: 702 ALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEV 761
               +   +                     +    L +       Q         S+   
Sbjct: 457 QALKLLKDKLELKKSEDL--------LKETKLVKLLEQLELLLLRQKLEEASQKESKARE 508

Query: 762 AKASELRSLERLEEVN-KEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRRK 820
             A  L  ++    +     A R   L VA+   + A    + +E        +  Q+  
Sbjct: 509 GLAVLLALIKDGVGLRIISAAGRGGDLGVAVANYKVAISVAVIVEVSAVADEVDERQKLV 568

Query: 821 AGESGQGVNSTKIPTPSLEEKKDSKKYD 848
              +   + +          K   K   
Sbjct: 569 RALTELPLPARTFVLLDPLLKLPLKSIA 596

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 54/274 (19%), Positives = 120/274 (43%), Gaps = 15/274 (5%)

Query: 285 RRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTE--- 341
           R   + QEL  +  ++ E  K  E  E  + ++ + L++ +  +  L+  +E  ++E   
Sbjct: 703 RLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKE 762

Query: 342 --EHQAKQDSELAKLR--VEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVE 397
                 + + +L KL   + ++E  ++       +A+L   +       + L+ ++ ++ 
Sbjct: 763 LEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLN 822

Query: 398 SLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEE 457
            L  +   L  E     ++  +     K +EK +E L  +    +E LE   AA  + E 
Sbjct: 823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES 882

Query: 458 QRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSA 517
           +     + +++D    E +L++ E ++++L  QI   +   S+L      L +   ELS 
Sbjct: 883 RLGD--LKKERDEL--EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE---ELSE 935

Query: 518 YMESKLK-EESNEEGHSNGELEEPERKTHTDIQA 550
             + K + EE  EE  S  +++   ++   +I+A
Sbjct: 936 IEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRA 969

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 77/331 (23%), Positives = 143/331 (43%), Gaps = 27/331 (8%)

Query: 290 EQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDS 349
            + +E   EE+ E  +  E           +L   +  +EEL+   +  +  E + +   
Sbjct: 376 REAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATL 435

Query: 350 ELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTE 409
             A+ RVEE E  +  +A         V  + HV  + E +   +E+E+  +D    V E
Sbjct: 436 RTARERVEEAEALL--EAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEE 493

Query: 410 KDIAVKKAEEAISASKEVEKTVE--ELTIELIATKESL------------ESAHAAHLEA 455
            +  +++AE+ + A   +E+  E  E   ELIA +               E A     EA
Sbjct: 494 VEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEA 553

Query: 456 EEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAEL 515
           EE+R  AA A ++     E E+ +   +L +L ++I S + +R+ L    A + D + E+
Sbjct: 554 EEKREAAAEAEEEAEEARE-EVAELNSKLAELKERIESLERIRTLL----AAIADAEDEI 608

Query: 516 SAYME--SKLKEESNEEGHSNGELEEPERKTHTDIQ-AAVASAKKELEEVKLNIEKATAE 572
               E    L E ++E      E  E +R+   +   A +  A+++ E  +  +E+   +
Sbjct: 609 ERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEK 668

Query: 573 VNCLKVAATSLQSE---LEREKSALAAIRQR 600
           ++ L+     LQ+E   +E E   L  +R+R
Sbjct: 669 LDELREERDDLQAEIGAVENELEELEELRER 699

Length = 880

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 48.3 bits (115), Expect = 2e-05
 Identities = 71/355 (20%), Positives = 110/355 (30%), Gaps = 46/355 (12%)

Query: 443  ESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLD 502
             SL +AH    EAE Q   A  A          EL +A  +          A+       
Sbjct: 786  RSLRAAHRRAAEAERQ---AESAER--------ELARAARKAAAAAAAWKQARRELE--R 832

Query: 503  TASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEV 562
             A+ L  DL  +  A     L  +   +      LE   R+         A  +      
Sbjct: 833  DAADL--DLPTDPDALEAVGLALKRFGDHLH--TLEVAVREL-RHAATRAAEQRARAARA 887

Query: 563  KLNIEKATAEVNCLKVAATSLQSELEREKSALAA----IRQREGMASVAVASLEAELDRT 618
            + +  +A  +    +  A      L   + ++ A    IR R      A+AS   EL R 
Sbjct: 888  ESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRL 947

Query: 619  RSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAA---GEELHKAKEEAEQAK 675
               +A  +     A EK  E    L   A+  D A    +     G       +      
Sbjct: 948  AEALATAEEARGRAEEKRAEADATLDERAEARDHAIGQLREFALTGLLEDALPDTEVPEL 1007

Query: 676  AGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYY 735
                TIE+ L  AR          + AL  +    E+         +        LE   
Sbjct: 1008 DAKWTIEAALKVAR--------RTEAALLQVADDDEALDRAANRISEEY------LELRR 1053

Query: 736  ELSKRAHEAEEQAN--MRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALK 788
             L+    +A+ +      VV+ + Q      + L     L  + +EIA R+E L 
Sbjct: 1054 TLAALGDDAQMEPADDGLVVSLVYQGRPVTPAGL-----LARLEQEIAQRRELLT 1103

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 47.8 bits (114), Expect = 3e-05
 Identities = 65/368 (17%), Positives = 136/368 (36%), Gaps = 53/368 (14%)

Query: 274 DWKAHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKL 333
           D+ A+  +  ER +  E+ L+ +  +    +K++E          ++L Q    +EE K 
Sbjct: 597 DYAANETELRERLQQAEEALQSAVAK----QKQAE----------EQLVQANAELEEQKR 642

Query: 334 NLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVK 393
               A+T   QA+ D  L +L+ E+       + ++A R Q          A ++L+ + 
Sbjct: 643 AEAEARTALKQARLD--LQRLQNEQQSLKDKLELAIAERKQ---------QAETQLRQLD 691

Query: 394 DEVESLRKDYAS-LVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAH 452
            +++ L +   + L   KD   +   E ++  + VE  ++    +L A  E+  +   A 
Sbjct: 692 AQLKQLLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKAR 751

Query: 453 LEA-EEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDL 511
           L+  ++Q      + D D       +K+ + ++++L   I      R ++          
Sbjct: 752 LKELKKQYDRELASLDVD----PNTVKELKRQIEELETTIERIAVRRPEV---------- 797

Query: 512 KAELSAYMES---KLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEK 568
             E  A+M+           E  +   +L E E     ++Q  +    K+ +  +  +E+
Sbjct: 798 -REYRAFMQETWLHRDSLREERPNLAIQLRELESS-AEELQQELTRLIKDTKLRRKKLEQ 855

Query: 569 ATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMK 628
               +         L   L  E   LA +++            E  +        L + K
Sbjct: 856 ERKALEKQLDQLDELLRGLRDEMRQLAELKEPA-----NANQAEGSISERLD--QLEEFK 908

Query: 629 EKEAREKT 636
            K  R   
Sbjct: 909 RKRKRLSG 916

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 46.2 bits (110), Expect = 9e-05
 Identities = 48/245 (19%), Positives = 100/245 (40%), Gaps = 25/245 (10%)

Query: 577 KVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKT 636
           K ++ + + EL+  +  LA +  +       + SL+ EL      +  ++ + +E   + 
Sbjct: 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718

Query: 637 VELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAAR 696
            EL ++L    +E +Q +S  +   EEL + +EE E+ +     +E  L +  + +   +
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLK 778

Query: 697 ASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAI 756
              +      +ALQE                               E  E+A  R+ A  
Sbjct: 779 EEIEELEEKRQALQEELEELE-------------------------EELEEAERRLDALE 813

Query: 757 SQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHE 816
            ++E  +    R  + +EE+ +EI   +E L    E+ E+ ++    +++EL +  AE E
Sbjct: 814 RELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKE 873

Query: 817 QRRKA 821
           +    
Sbjct: 874 ELEDE 878

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 2e-04
 Identities = 49/267 (18%), Positives = 101/267 (37%), Gaps = 14/267 (5%)

Query: 555 AKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAE 614
           A+K     +L  E    E+  L      L+ ELE  +  L+ + +        +   E E
Sbjct: 209 AEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKE 268

Query: 615 LDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQA 674
           ++  +SE+  ++ + +E +E+ +EL ++++    E    +   +    EL + +E  E+ 
Sbjct: 269 IEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEEL 328

Query: 675 KAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEY 734
           K     ++  L      +E           A + L+E  SA   +  +         E  
Sbjct: 329 KEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEEL-------FEAL 381

Query: 735 YELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKA 794
            E          +    +     +IE  +       ERLE +++ +   KE LK    + 
Sbjct: 382 REELAELEAELAEIRNELEELKREIESLE-------ERLERLSERLEDLKEELKELEAEL 434

Query: 795 EKAKEGKLGIEQELRKWRAEHEQRRKA 821
           E+ +     + +EL +   + E+ R  
Sbjct: 435 EELQTELEELNEELEELEEQLEELRDR 461

Length = 1163

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 66/349 (18%), Positives = 105/349 (30%), Gaps = 66/349 (18%)

Query: 499 SKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTH---TDIQA----A 551
           ++ D  S  L   + EL    E        EE   +   E  ER+     T ++A     
Sbjct: 276 TQYDQLSRDLGRARDELETARE--------EERELDARTEALEREADALRTRLEALQGSP 327

Query: 552 VASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASL 611
                +ELE  + + E   A     + A    +S LE E+  L    +  G    A   L
Sbjct: 328 AYQDAEELERARADAEALQAAAADARQAIREAESRLEEERRRL---DEEAGRLDDAEREL 384

Query: 612 EAELDRTRSEIALVQMKEKEAREKTVELPKQ-------LQVAAQEADQAKSLAQAAGEEL 664
            A  ++         +      E    L  Q       L    Q+AD+  +        L
Sbjct: 385 RAAREQLARAAERAGLSPAHTAEPDAALAAQELQELGALDARRQDADRVIAQRSEQVALL 444

Query: 665 HK---AKEEAEQAKAGASTIESRLT-------AARKEIEAARASEKLALAAIKALQESES 714
            +     + AE   A A      L        A  +  + A   E   LA + A Q    
Sbjct: 445 RRRDDVADRAEATHAAARARRDELDEEAEQAAARAELADEAVHREGARLAWVDAWQAQLR 504

Query: 715 AQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLE 774
                 VD   G    L +                       + + VA  S ++ L    
Sbjct: 505 ELTILAVDDQPGA---LADLDSWDALL------------QGEAPVRVAVYSAVQPLA--- 546

Query: 775 EVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRRKAGE 823
               E+   + AL++A E           +E+E    R E E+  +  +
Sbjct: 547 ---DELTRERAALRLAEEV----------LEEERDALRTERERLEQGTD 582

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 63/257 (24%), Positives = 98/257 (38%), Gaps = 55/257 (21%)

Query: 475 KELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSN 534
           ++L+Q    L K+ +Q    + L+ +L  A A L   +AEL A       +E   E  S 
Sbjct: 63  QDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEAL--KDDNDEETRETLST 120

Query: 535 GELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSAL 594
             L + E +        + +A+ +L           AE N   V   SLQ++ ER ++AL
Sbjct: 121 LSLRQLESRL-AQTLDQLQNAQNDL-----------AEYNSQLV---SLQTQPERAQAAL 165

Query: 595 AA-------IRQR------EGMASVAV---------ASLEAELDRTRSEIA-------LV 625
            A       IR         G A             A L A+ D  R  +        L+
Sbjct: 166 YANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLL 225

Query: 626 QMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRL 685
           Q +      +   L  QLQ   QEA  +K L  +      K  +EA+     A    + L
Sbjct: 226 QKQRDYLTARIQRLEHQLQ-LLQEAINSKRLTLS-----EKTVQEAQSQDEAARIQANPL 279

Query: 686 TAARKEIEA-ARASEKL 701
            A  +E+E   + S++L
Sbjct: 280 VA--QELEINLQLSQRL 294

Length = 1113

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 44.0 bits (104), Expect = 3e-04
 Identities = 85/553 (15%), Positives = 171/553 (30%), Gaps = 61/553 (11%)

Query: 282 TVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLER---- 337
              R   ++  L    +E+   ++    A         +L++   L       ++     
Sbjct: 401 DALRAGDIDAALAALEQEVAVAKRELAQALSRLGLWRGDLEELVALPVPSAEQVQAFLKE 460

Query: 338 ------AQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKS 391
                 A+ ++     + E     +E   + +    +V    ++  A+AR  A   +++ 
Sbjct: 461 AEEIMQAKRQKRDRLLELEEDLETLELQLRHLDAAGAVPTEEEVAAARARRDALWQDIRR 520

Query: 392 VKDEVESLRKDYASLVTEKDIAV----KKAEEA------ISASKEVEKTVEELTIELIAT 441
               +E     Y   V   D       ++A+            +   + +E+L  EL   
Sbjct: 521 GYALLEPTASAYEEAVESADQLADRLLREAQLVGELQSLRQQEEAARRRLEQLEKELEVL 580

Query: 442 KESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKL 501
           + +L +   A               + +   W  E   A E+++   +      +L + L
Sbjct: 581 ELALAALREAWQAQWAAAGLPLTPAEMED--WLAERATAREQVRAYFKA---RAELDALL 635

Query: 502 DTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEE 561
           D  +     L+A L A +++       EE     EL     +      A  AS  + L +
Sbjct: 636 DRRA----RLRAALRAALKAVAIVLPGEELAELLELARQLLEEAEKQAARKASLDERLRD 691

Query: 562 VKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLE--------- 612
            +  +E+A    +  + A  + Q +            +     + A+ +LE         
Sbjct: 692 AERALEEAEERHDEAQSALEAWQEQWYDALLEAGLGGRAS--PAGALDALELLQNIKEKL 749

Query: 613 AELDRTRSEIALVQMKEKEAREKTVELPKQLQV---------AAQEADQAKSLAQAAGEE 663
              D  R  IA ++       E+   L + +            A+   Q    A+     
Sbjct: 750 QAADDLRQRIAAMERDLARFEEEVEALAEAVAPEMLGTPADETARALKQRLKRARDTAAA 809

Query: 664 LHKAKEEAEQAKAGASTIESRLTAARKEIEA----ARASEKLALAAIKALQESESAQRTD 719
             K  EE E+A+   S   + L  A   + A    AR +    L A     ++    R  
Sbjct: 810 AEKLAEEIEEAEKEVSEAAAALDEAEARLTALLRAARCTTIEELLAAVERSDTYRELRKR 869

Query: 720 DVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKE 779
                  +  +       +  A  A    +        ++        R +E LEE   E
Sbjct: 870 IAALERTLVRAGGGLSLEALVAEAAALDPD--------ELPARLEELARDIEELEEELNE 921

Query: 780 IATRKEALKVAME 792
           +A    A K  + 
Sbjct: 922 LAQEVGAAKQELA 934

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 44.0 bits (104), Expect = 4e-04
 Identities = 65/326 (19%), Positives = 121/326 (37%), Gaps = 38/326 (11%)

Query: 448 AHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASAL 507
           A     E E + I     + +      K L +AEEEL  L +++   +  + +L+    L
Sbjct: 155 ALKELKELEAE-IREVQLKTRTWKDLVKALDEAEEELANLRKELRQLEKEKQRLERLRRL 213

Query: 508 LLDLKA------ELSAYMES-KLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELE 560
           L  L        +L+A  E   L  ++ E            R+    +   + + + EL+
Sbjct: 214 LPLLAERKALEQQLAALGEVIDLPPDAVERYEEARAELRAARRNLELLTERLEALQAELD 273

Query: 561 EVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASV---AVASLEAELDR 617
           E+ L+ E           A  +L  +    ++A   +  REG  +    A A+L A++  
Sbjct: 274 EISLDEELLAQA-----AAIEALHQQRGEYRNAEQDLPDREGEIANAREAAAALLAQIGP 328

Query: 618 TRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAG 677
              E A+  ++   A ++TV    +L+   +  DQA   A+ A EE  +  ++     A 
Sbjct: 329 DADEEAVESLRPSLAAKETVT---ELEKRKEALDQALKSARDALEERERELKQVRAQLAA 385

Query: 678 AST-------------------IESRLTAARKEIEAARASEKLALAAIKALQESESAQRT 718
             T                   I++ L A  +E+  A+     AL+ +   +        
Sbjct: 386 LPTVTVPEPLRAALADALRAGDIDAALAALEQEVAVAKRELAQALSRLGLWRGDLEELVA 445

Query: 719 DDVDSPTGVTLSLEEYYELSKRAHEA 744
             V S   V   L+E  E+ +   + 
Sbjct: 446 LPVPSAEQVQAFLKEAEEIMQAKRQK 471

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 43.8 bits (104), Expect = 4e-04
 Identities = 65/366 (17%), Positives = 131/366 (35%), Gaps = 50/366 (13%)

Query: 327  LVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAV 386
             +E+L+   E           D +  +   +   + I    +VA  A  E    +     
Sbjct: 787  RIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRR 846

Query: 387  SELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVE------------KTVEEL 434
             EL+    + ES  +   S        +++A+E +SA   +               VEE+
Sbjct: 847  VELERALADHESQEQQQRS-------QLEQAKEGLSALNRLLPRLNLLADETLADRVEEI 899

Query: 435  TIELIATKESLES--AHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQIL 492
              +L   +E+      H   L   E  +    +  +     +++ +QA++  +   QQ  
Sbjct: 900  REQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAF 959

Query: 493  SAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAV 552
            +  ++  +           +A  S Y      E++ E    N +L E  R+     +   
Sbjct: 960  ALTEVVQR-----------RAHFS-Y------EDAAEMLAKNSDLNEKLRQRLEQAEQER 1001

Query: 553  ASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQR-EGMASVAVASL 611
              A+++L +       A A++        SL+S  + ++  L  ++Q  + +   A +  
Sbjct: 1002 TRAREQLRQ-------AQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGA 1054

Query: 612  EAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEA 671
            E      R E+     +    R +  +L KQL     E D      +    + H+ +E+ 
Sbjct: 1055 EERARARRDEL---HARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQV 1111

Query: 672  EQAKAG 677
              AKAG
Sbjct: 1112 VNAKAG 1117

Length = 1486

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 43.5 bits (102), Expect = 4e-04
 Identities = 45/231 (19%), Positives = 100/231 (43%), Gaps = 11/231 (4%)

Query: 578 VAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTV 637
           ++A +L       ++  + + Q +         +  +L   R+E+   Q +++ A  +  
Sbjct: 54  ISAATLAILFLLNRNLRSGVFQLD--------DIRPQLRALRTELGTAQGEKRAAETERE 105

Query: 638 ELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARA 697
               +LQ A QE +  +    AA + L KA++E  +    A  +++RL    ++     A
Sbjct: 106 AARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEA 165

Query: 698 SEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAIS 757
             +   A+ K LQ S +  ++  +D         +E   L+ RA+ A  QA    +A  +
Sbjct: 166 QAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAA--QARTEELARRA 223

Query: 758 QIEVAKASELRSLE-RLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQE 807
                 A  ++  + ++ +  ++IA R E ++    + ++ +  +  +EQE
Sbjct: 224 AAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQE 274

Length = 499

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 6e-04
 Identities = 54/289 (18%), Positives = 99/289 (34%), Gaps = 28/289 (9%)

Query: 382 HVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIAT 441
            +AA     +   +++ ++K+ A+L  +      +  +     K +E  +  L  +LI T
Sbjct: 26  VLAAAFSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIET 85

Query: 442 KESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKL 501
                   A  L+   ++I    AR            Q  E+ ++L +Q+ + +  RS  
Sbjct: 86  --------ADDLKKLRKQIADLNARL------NALEVQEREQRRRLAEQLAALQ--RSGR 129

Query: 502 DTASALLLD----LKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKK 557
           +   ALL+      ++   A     L     E       L+    K    ++A +A+ + 
Sbjct: 130 NPPPALLVSPEDAQRSVRLAIYYGALNPARAER---IDALKA-TLKQLAAVRAEIAAEQA 185

Query: 558 ELE----EVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEA 613
           EL     E +    K    +   K     L SEL  ++  L  +R  E      +AS EA
Sbjct: 186 ELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEA 245

Query: 614 ELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGE 662
              + R   A  +     AR    +   +            S     G 
Sbjct: 246 AAAKAREAAAAAEAAAARARAAEAKRTGETYKPTAPEKMLISSTGGFGA 294

Length = 420

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 43.0 bits (102), Expect = 7e-04
 Identities = 90/418 (21%), Positives = 149/418 (35%), Gaps = 53/418 (12%)

Query: 370 AARAQLEVAKARHVAAVSELKSVKDEVESLRKDYAS------LVTEKDIAVKKAEEAISA 423
            +R QL   + R V    EL  + +    L +DY +      LV       +K E   + 
Sbjct: 297 TSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQAD 356

Query: 424 SKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQ-DSHLWEKELKQAEE 482
                  +EEL   L    E +E A     E E +   A    D+  S L   + +QA +
Sbjct: 357 -------LEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQL--ADYQQALD 407

Query: 483 ELQKLTQQILSAKDLRSKLDTASAL--LLDLKAE-LSAYMESKLKEESNEEGHSNGELEE 539
             Q    Q   A      L+ A  L  L DL A+    ++E    E   +E  +  EL  
Sbjct: 408 VQQTRAIQYQQAVQA---LERAKQLCGLPDLTADNAEDWLE----EFQAKEQEATEELLS 460

Query: 540 PERKTHTDIQAAVASAKKELEEVKLN-IEKATAEVNCLKVAATSLQSELEREKSALAAIR 598
            E+K       +VA A     E     + K   EV+  +  A  +  EL R       + 
Sbjct: 461 LEQKL------SVAQAAHSQFEQAYQLVRKIAGEVS--RSEAWDVARELLRRLREQRHLA 512

Query: 599 QREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQ 658
           ++     + ++ LE  L + +    L+            E  K+L     + D+ + L +
Sbjct: 513 EQLQQLRMRLSELEQRLRQQQRAERLLA-----------EFCKRLGKNLDDEDELEQLQE 561

Query: 659 AAGEELHKAKEEAEQAKAGASTIESRLTAARKEIE--AARASEKLAL-AAIKALQESESA 715
                L    E   +A+     +  +L   +  I+  AARA   LA   A+  L+E    
Sbjct: 562 ELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLRE---- 617

Query: 716 QRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERL 773
           Q  ++ +    VT  +++  E  +      ++   R  A   +IE           RL
Sbjct: 618 QSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGSEDPRL 675

Length = 1486

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 7e-04
 Identities = 46/234 (19%), Positives = 97/234 (41%), Gaps = 19/234 (8%)

Query: 474 EKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHS 533
           EK++++ +++  KL +Q+   K L +++ +  A L++   +L   +  ++ + +      
Sbjct: 51  EKKIREQQDQRAKLEKQL---KSLETEIASLEAQLIETADDLKK-LRKQIADLNARLNAL 106

Query: 534 NGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSA 593
             +  E  R+    + A   S +     + ++ E A   V  L +   +L         A
Sbjct: 107 EVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVR-LAIYYGALNPARAERIDA 165

Query: 594 LAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQL--QVAAQEAD 651
           L A  ++       +A+ +AEL    SE    Q  ++    + +E  K+   Q+ ++ + 
Sbjct: 166 LKATLKQLAAVRAEIAAEQAELTTLLSE----QRAQQAKLAQLLEERKKTLAQLNSELSA 221

Query: 652 QAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAA 705
             K L +       +A E     K   ++ E+    AR+   AA A+   A AA
Sbjct: 222 DQKKLEE------LRANESR--LKNEIASAEAAAAKAREAAAAAEAAAARARAA 267

Length = 420

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 8e-04
 Identities = 58/335 (17%), Positives = 125/335 (37%), Gaps = 31/335 (9%)

Query: 550 AAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREK----SALAAIRQREGMAS 605
           A V+  K+  EE +  +E+    +  L+     L+ +LE+ +     A      +  +  
Sbjct: 165 AGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRE 224

Query: 606 VAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELH 665
           + +A L A+L   R E+  ++ +     E+  EL ++L+ A +E ++ KS  +   EEL 
Sbjct: 225 LELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELE 284

Query: 666 KAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPT 725
           + +EE  + K     +E  ++  R+ +E      +     ++ L+E   A + +      
Sbjct: 285 ELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEE------ 338

Query: 726 GVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKE 785
                LEE   L +   +   +                  EL   E+L  + +E+    E
Sbjct: 339 -----LEERETLLEELEQLLAELEEAK------------EELE--EKLSALLEELEELFE 379

Query: 786 ALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRRKAGESGQGVNSTKIPTPSLEEKKDSK 845
           AL+  + + E          +EL++     E+R +           ++    LE + +  
Sbjct: 380 ALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEEL--KELEAELEEL 437

Query: 846 KYDRMSSAAAVPNMTSPKASMQGSNTETESSPEAK 880
           + +       +  +      ++    E E      
Sbjct: 438 QTELEELNEELEELEEQLEELRDRLKELERELAEL 472

Length = 1163

>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional

 Score = 42.6 bits (101), Expect = 8e-04
 Identities = 47/212 (22%), Positives = 83/212 (39%), Gaps = 14/212 (6%)

Query: 591 KSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEA 650
            +ALA ++ ++  A+  +           + IA  + ++ +AR +      Q +  A  A
Sbjct: 489 AAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARAR------QAEKQAAAA 542

Query: 651 DQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQ 710
              K  A AA     KAK+ A+QA    +  E     A      ARA  K A     + +
Sbjct: 543 ADPKKAAVAAAIARAKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAASAE 602

Query: 711 ESESAQRTDD----VDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASE 766
             E     D     V +      + +   + +    E  +     V AAI++ +  KA++
Sbjct: 603 PEEQVAEVDPKKAAVAAAIARAKAKKAEQQANAEPEEPVDPRKAAVAAAIARAKARKAAQ 662

Query: 767 LRSLERLEEVNKEIATRKEALKVAMEKAEKAK 798
            ++    EE       +K A+  A+ +A KAK
Sbjct: 663 QQANAEPEEAEDP---KKAAVAAAIARA-KAK 690

Length = 695

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 0.001
 Identities = 53/247 (21%), Positives = 102/247 (41%), Gaps = 21/247 (8%)

Query: 279  RMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERA 338
            R    E  + +E+ELE +   +    +  E+ E  + ++ +E+++ +  +EEL+  L+  
Sbjct: 788  RQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL 847

Query: 339  QTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVES 398
            + E  + +++ E  K  +EE+E    +        + E  +        EL+ ++ E+  
Sbjct: 848  EEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE-----EELRELESELAE 902

Query: 399  LRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQ 458
            L+++   L    +    K E       E+E   EEL  E   T E+        LE E +
Sbjct: 903  LKEEIEKLRERLEELEAKLERLEVELPELE---EELEEEYEDTLETELEREIERLEEEIE 959

Query: 459  RIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAY 518
             +G    R             A EE +++ ++    K  R  L+ A   LL++  EL   
Sbjct: 960  ALGPVNLR-------------AIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006

Query: 519  MESKLKE 525
               + KE
Sbjct: 1007 KRERFKE 1013

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 41/231 (17%), Positives = 88/231 (38%), Gaps = 16/231 (6%)

Query: 272 IVDWKAHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEEL 331
           + + +A   +  ER +  E+EL  +  E+ E   + E  +     + + LD+ +  +  L
Sbjct: 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL 815

Query: 332 KLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKS 391
                  +      ++     + R+E++E+ I + +        E+ +   +    E   
Sbjct: 816 NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE--- 872

Query: 392 VKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHA- 450
              E+E+L  + ASL     +   + EE     +E+E    EL  EL   +E L      
Sbjct: 873 --SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR 930

Query: 451 -AHLEAEEQRI-------GAAMARDQDSH--LWEKELKQAEEELQKLTQQI 491
              LE     +        +    + ++     E + ++A   L++L  +I
Sbjct: 931 LEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 42.8 bits (101), Expect = 0.001
 Identities = 93/493 (18%), Positives = 167/493 (33%), Gaps = 15/493 (3%)

Query: 304 RKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLR---VEEME 360
           ++     E  K  + + L   +  +EE +  L++ + +       +    LR    + + 
Sbjct: 345 KETVTELEKRKEALDQALKSARDALEERERELKQVRAQLAALPTVTVPEPLRAALADALR 404

Query: 361 QGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEA 420
            G  D A  A   ++ VAK     A+S L   + ++E L         +    +K+AEE 
Sbjct: 405 AGDIDAALAALEQEVAVAKRELAQALSRLGLWRGDLEELVALPVPSAEQVQAFLKEAEEI 464

Query: 421 ISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARD----QDSHLWEKE 476
           + A ++    + EL  +L   +  L    AA     E+ + AA AR     QD       
Sbjct: 465 MQAKRQKRDRLLELEEDLETLELQLRHLDAAGAVPTEEEVAAARARRDALWQDIRRGYAL 524

Query: 477 LKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGE 536
           L+      ++  +      D   +       L  L+ +  A      + E   E      
Sbjct: 525 LEPTASAYEEAVESADQLADRLLREAQLVGELQSLRQQEEAARRRLEQLEKELEVLELAL 584

Query: 537 LEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAA 596
               E        A +     E+E+       A  +V     A   L + L+R     AA
Sbjct: 585 AALREAWQAQWAAAGLPLTPAEMEDWLAERATAREQVRAYFKARAELDALLDRRARLRAA 644

Query: 597 IRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSL 656
           +R    + +VA+     EL         +  + ++   +   L ++L+ A +  ++A+  
Sbjct: 645 LRA--ALKAVAIVLPGEELAELLELARQLLEEAEKQAARKASLDERLRDAERALEEAEER 702

Query: 657 AQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQ 716
              A   L   +E+   A   A        A   +      + K  L A   L++  +A 
Sbjct: 703 HDEAQSALEAWQEQWYDALLEAGLGGRASPAGALDALELLQNIKEKLQAADDLRQRIAAM 762

Query: 717 RTDDVDSPTGVTLSLEEY--YELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLE 774
             D       V    E      L   A E       R+  A      A+    +  E +E
Sbjct: 763 ERDLARFEEEVEALAEAVAPEMLGTPADETARALKQRLKRARDTAAAAE----KLAEEIE 818

Query: 775 EVNKEIATRKEAL 787
           E  KE++    AL
Sbjct: 819 EAEKEVSEAAAAL 831

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 46/240 (19%), Positives = 83/240 (34%), Gaps = 7/240 (2%)

Query: 546 TDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMAS 605
              +    +A+ EL++ +   E    E+   +      Q EL R       ++ R    +
Sbjct: 98  RAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLA 157

Query: 606 VAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELH 665
                LEA+    ++    +Q    + + + ++L  +     QEA    + A AA     
Sbjct: 158 EQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTE 217

Query: 666 KAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPT 725
           +    A  A+  A  I+ R     ++ +   A  +      + LQ  E+AQ         
Sbjct: 218 ELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQ-----ARLE 272

Query: 726 GVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSL--ERLEEVNKEIATR 783
                LE YY+   R  +         V A +   VA+A        + L   N+  A R
Sbjct: 273 QEVAQLEAYYQAYVRLRQQAAATQRGQVLAGAAQRVAQAQAQAQAQAQLLSSANRPAALR 332

Length = 499

>gnl|CDD|233228 TIGR00998, 8a0101, efflux pump membrane protein (multidrug resistance protein A)

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 25/125 (20%), Positives = 55/125 (44%), Gaps = 5/125 (4%)

Query: 586 ELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAR---EKTVELPKQ 642
            L + ++ LAA+ ++     + V  L+A+++  + ++   + K  +A     + V L K+
Sbjct: 81  ALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKK 140

Query: 643 LQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLA 702
             ++ +E D A+    +A   L+ A +E   A              +  ++ A+   K A
Sbjct: 141 GLISREELDHARKALLSAKAALNAAIQEQLNANQALVRGTP--LKKQPAVQEAKERLKTA 198

Query: 703 LAAIK 707
             A+K
Sbjct: 199 WLALK 203

[Transport and binding proteins, Other]. Length = 334

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 77/509 (15%), Positives = 154/509 (30%), Gaps = 17/509 (3%)

Query: 387 SELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTV----EELTIELIATK 442
             L  +  ++E L+     L  +   A++  +       E E  +     +L  E I   
Sbjct: 184 ENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLL 243

Query: 443 ESLESAHAAHLEAEEQRIGAAMARDQDSH----LWEKELKQAEEELQKLTQQILSAKDLR 498
           + L       +E+ +Q +                 EKE K  EEEL+ L ++    K   
Sbjct: 244 QELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSEL 303

Query: 499 SKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKE 558
            KL+       +   E    ++   KE   E+     E  E E K     + A    +++
Sbjct: 304 LKLERRKVDDEEKLKESEKELKKLEKELKKEK--EEIEELEKELKELEIKREAEEEEEEQ 361

Query: 559 LEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRT 618
           LE+++  +E+   E+   K   +   S   + K     ++  E       A L  EL   
Sbjct: 362 LEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKE----AKLLLELSEQ 417

Query: 619 RSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGA 678
             ++   + KE+    + +E   + +      ++ +   QA   +L K K E ++++   
Sbjct: 418 EEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQAL--KLLKDKLELKKSEDLL 475

Query: 679 STIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELS 738
              +      + E+   R   + A       +E  +       D      +S        
Sbjct: 476 KETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLALIKDGVGLRIISAAGRGGDL 535

Query: 739 KRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAK 798
             A    + A    V         +  E + L R        A     L   + K     
Sbjct: 536 GVAVANYKVAISVAVIVEVSAVADEVDERQKLVRALTELPLPARTFVLLD-PLLKLPLKS 594

Query: 799 EGKLGIEQELRKWRAEHEQRRKAGESGQGVNSTKIPTPSLEEKKDSKKYDRMSSAAAVPN 858
              L I+  L   +          +  +      I   +   K       + S      +
Sbjct: 595 IAVLEIDPALNLAQLNKATLEADEDDKRAKVVEGILKDTELTKLLESAKAKESGLRKGVS 654

Query: 859 MTSPKASMQGSNTETESSPEAKGPKKKKK 887
           +    A             +    +++ +
Sbjct: 655 LEEGLAEKSELKASLSELTKELLAEQELQ 683

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 41.9 bits (99), Expect = 0.002
 Identities = 63/356 (17%), Positives = 123/356 (34%), Gaps = 62/356 (17%)

Query: 494 AKDLRSKLDTASALLLDLKAELSAYMESKLKEES--NEEGHSNGELEEPERKTHTDIQAA 551
           A + R  L+ A    L+L+ EL         E+    E      EL E E     D QAA
Sbjct: 278 ANERRVHLEEA----LELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAA 333

Query: 552 VASAKKELEEVKL--NIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVA 609
                     ++    IE+  A++         L+  LE +   +    +++        
Sbjct: 334 SDHLNLVQTALRQQEKIERYQADLE-------ELEERLEEQNEVVEEADEQQEENEARAE 386

Query: 610 SLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKE 669
           + E E+D  +S++A  Q      + + +    Q Q A Q  ++AK L          A++
Sbjct: 387 AAEEEVDELKSQLADYQQALDVQQTRAI----QYQQAVQALERAKQLCGLPDLTADNAED 442

Query: 670 EAEQAKAGASTI-ESRLTAARK-----------------------EIEAARASEKLALAA 705
             E+ +A      E  L+  +K                       E+  + A +     A
Sbjct: 443 WLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDV----A 498

Query: 706 IKALQESESAQRTDDVDSPTGVTLS-LEEYYELSKRAHEAEEQANMRVVAAISQIEVAKA 764
            + L+     +   +      + LS LE+     +RA     +   R+   +   +  + 
Sbjct: 499 RELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQ 558

Query: 765 SELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQRRK 820
            +     RLE ++              E   +A+E ++ + Q+L + +A  ++   
Sbjct: 559 LQEELEARLESLS--------------ESVSEARERRMALRQQLEQLQARIQRLAA 600

Length = 1486

>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional

 Score = 41.9 bits (99), Expect = 0.002
 Identities = 49/238 (20%), Positives = 85/238 (35%), Gaps = 24/238 (10%)

Query: 474 EKELKQAEEELQKLTQQILSAKDLRSK---------LDTASALLLDLKAELSAYMESKLK 524
           E   K+A E      +  ++A   R K         +   +    D  A ++A    K +
Sbjct: 470 EARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQ 529

Query: 525 EESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQ 584
             + +         +P++     + AA+A AK +    +    +A  EV+  K A  +  
Sbjct: 530 ARARQAEKQAAAAADPKKAA---VAAAIARAKAKKAAQQAANAEAEEEVDPKKAAVAAAI 586

Query: 585 SELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQ 644
           +  + +K+A  A       AS       AE+D  ++ +A        AR K  +  +Q  
Sbjct: 587 ARAKAKKAAQQA-------ASAEPEEQVAEVDPKKAAVAAA-----IARAKAKKAEQQAN 634

Query: 645 VAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLA 702
              +E    +  A AA     KA++ A+Q              A      ARA  K A
Sbjct: 635 AEPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPEEAEDPKKAAVAAAIARAKAKKA 692

Length = 695

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 41.5 bits (98), Expect = 0.002
 Identities = 37/216 (17%), Positives = 78/216 (36%), Gaps = 16/216 (7%)

Query: 307 SEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADD 366
            E   V   QVL ELD T    +  +L  +  + E   A+  +E       E    +   
Sbjct: 60  REGDRVKAGQVLVELDATDVEADAAELESQVLRLEAEVARLRAEADSQAAIEFPDDLLSA 119

Query: 367 ASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKE 426
              A    ++  ++   +  S L++  + + +  K   + +      ++   + +    E
Sbjct: 120 EDPAVPELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISE 179

Query: 427 VEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQK 486
             +   +L       KE    +    LE E +R  A    +      E EL+  + ++ +
Sbjct: 180 ELEARRKL-------KEKGLVSRLELLELERER--AEAQGELGRL--EAELEVLKRQIDE 228

Query: 487 LTQQILSA-----KDLRSKLDTASALLLDLKAELSA 517
           L  +         +++  +L  A A L +L+  L+ 
Sbjct: 229 LQLERQQIEQTFREEVLEELTEAQARLAELRERLNK 264

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.2 bits (97), Expect = 0.003
 Identities = 112/564 (19%), Positives = 223/564 (39%), Gaps = 81/564 (14%)

Query: 283 VERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEE 342
           V+  + +++E+E   +E+          E    ++ + +++ K+ +EEL+  ++  +  +
Sbjct: 230 VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK 289

Query: 343 HQAKQDSELAKLRVE------EMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEV 396
            +A++  +L++   E      E+E+ ++         +  + +         L+ +K ++
Sbjct: 290 EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELE--EKEERLEELKKKL 347

Query: 397 ESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIA-TKESLESAHAAHLEA 455
           + L K    L        +  EEA +  +E+E+  + LT       ++ LE    A  E 
Sbjct: 348 KELEKRLEELEER----HELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEI 403

Query: 456 EE------QRIGAAMARDQDSHLWEKELKQA-------------EEELQKLTQQILSAKD 496
           EE       RIG      ++     +ELK+A             E   + L +     K 
Sbjct: 404 EEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKR 463

Query: 497 LRSKLDTASALLLDLKAELSAYMESKLKEESN--EEGHSNGELEEPERKTHTDIQAAVAS 554
           +  +L         L+ EL   +E  LK+ES   +      +L+E E K        +  
Sbjct: 464 IEKELKEIEEKERKLRKELRE-LEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEK 522

Query: 555 AKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAE 614
             +E E++K  + K   E+  LK     L+ EL+++ + L             +  LE E
Sbjct: 523 KAEEYEKLKEKLIKLKGEIKSLKKELEKLE-ELKKKLAELEK----------KLDELEEE 571

Query: 615 LDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQA 674
           L     E+  +  +  E  E+ ++  +       E   A+   +   +EL K +EE ++A
Sbjct: 572 LAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKA 631

Query: 675 KAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEY 734
               +  E RL   RKE+E                                    S EEY
Sbjct: 632 FEELAETEKRLEELRKELEELE------------------------------KKYSEEEY 661

Query: 735 YELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKA 794
            EL +  +    +    + A + ++E  +    ++LE+L+E  +E    K+ L    EK 
Sbjct: 662 EELREE-YLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL----EKL 716

Query: 795 EKAKEGKLGIEQELRKWRAEHEQR 818
           EKA E    + ++++K++A  ++R
Sbjct: 717 EKALERVEELREKVKKYKALLKER 740

Length = 880

>gnl|CDD|215974 pfam00529, HlyD, HlyD family secretion protein

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 14/171 (8%)

Query: 613 AELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEA- 671
             LD T  + AL +    EA     +   Q ++A  E D+ ++L   A  +  +  + A 
Sbjct: 31  VRLDPTPYQAALDRA---EAELAAAQADAQARLARAERDRLQALVAQAAIQSEQEADAAR 87

Query: 672 -----EQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPTG 726
                  A +  +  +++L AAR  + +A A   ++L  I A Q +  A   +       
Sbjct: 88  AALREALAASRGAASKAQLEAARDNLRSALALLPISLGRIGASQATLGALLNNLQAQGLA 147

Query: 727 VTLSLEEYYELSKRAHEAEEQANMRVVAAISQIE-VAKASELRSLERLEEV 776
               L+E Y              +R++ A +Q E V   ++LRS++  EEV
Sbjct: 148 ARAQLDEAY----LQLAQTAAELLRLIRAPAQGERVQSEAQLRSVQVGEEV 194

Length = 304

>gnl|CDD|224482 COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 4/116 (3%)

Query: 593 ALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQ----VAAQ 648
           AL         A   + +L A+L   ++ IA  + ++ +  +  +E   +L     V+ +
Sbjct: 92  ALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSRE 151

Query: 649 EADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALA 704
           E D+A++  QAA   L  A+   +Q  A   +  S   A     EAA    KL L 
Sbjct: 152 ELDRARAALQAAEAALAAAQAAQKQNLALLESEVSGAQAQVASAEAALDQAKLDLE 207

Length = 352

>gnl|CDD|224455 COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 16/195 (8%)

Query: 577 KVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKT 636
               +     L+      A +R  E  A  A A LEA      +E+A        A+E  
Sbjct: 111 GYGLSLASWLLDLFGRVRANVRAAEAAAKAARAQLEAARLSLAAEVATAYFDLLAAQE-- 168

Query: 637 VELPKQLQVAAQEADQAKSLAQAAGEELHKA----KEEAEQAKAGASTIESRLTAARKEI 692
                QL +A +    A+   + A E+ + A    + +  QA+A  ++  ++L AA+ ++
Sbjct: 169 -----QLALAEETLAAAEEQLELA-EKRYDAGLATRLDVLQAEAQLASARAQLAAAQAQL 222

Query: 693 EAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRV 752
             AR     ALA +  L+  E     +    P    +  +     +         A  ++
Sbjct: 223 AQARN----ALARLLGLEPGELLDAPEPEALPALPPVLPDGLPSEALARRPDILAAEAQL 278

Query: 753 VAAISQIEVAKASEL 767
            AA + I  A+A+ L
Sbjct: 279 AAANANIGAARAAFL 293

Length = 457

>gnl|CDD|224482 COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 13/117 (11%)

Query: 595 AAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAK 654
           AA+ Q E     A+A+ EA+L   R+++A  Q    +A  +       L  A  E ++  
Sbjct: 91  AALEQAEA----ALAAAEAQLRNLRAQLASAQALIAQAEAQD------LDQAQNELERRA 140

Query: 655 SLAQA---AGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKA 708
            LAQ    + EEL +A+   + A+A  +  ++        +E+  +  +  +A+ +A
Sbjct: 141 ELAQRGVVSREELDRARAALQAAEAALAAAQAAQKQNLALLESEVSGAQAQVASAEA 197

Length = 352

>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional

 Score = 40.2 bits (94), Expect = 0.004
 Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 33/174 (18%)

Query: 632 AREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKE 691
             E     P + +  A+EA+ A   A           +EA+ A A A+   + L A+ ++
Sbjct: 181 KAEALAAAPARAETLAREAEDAARAA-----------DEAKTAAAAAAREAAPLKASLRK 229

Query: 692 IEAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMR 751
           +E A+A    A A +K   ++ +A +TD+  +                RA E +++A  +
Sbjct: 230 LERAKAR---ADAELKRADKALAAAKTDEAKA----------------RAEERQQKAAQQ 270

Query: 752 VVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIE 805
              A +Q++ AKA +  +        KE A    A K    KA  A + KL +E
Sbjct: 271 AAEAATQLDTAKA-DAEAKRAAAAATKEAAKAAAAKKAETAKA--ATDAKLALE 321

Length = 508

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 40.7 bits (95), Expect = 0.004
 Identities = 71/436 (16%), Positives = 141/436 (32%), Gaps = 25/436 (5%)

Query: 290 EQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDS 349
           E  +  +HE     R+ S   +    Q +  L Q K  + + KL     + +  Q +Q +
Sbjct: 354 EIHIRDAHEVATSIREISCQ-QHTLTQHIHTLQQQKTTLTQ-KLQSLCKELDILQREQAT 411

Query: 350 ELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTE 409
              +       QG    A      Q   A+    A     +  K E   L++   SL   
Sbjct: 412 IDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKER 471

Query: 410 KDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIG------AA 463
           +     K  E I   +  +K V    +  +  +         H     Q I         
Sbjct: 472 EQQLQTK--EQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRR 529

Query: 464 MARDQDSHLW-EKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESK 522
           M R + ++   E   +    +L    +Q  S K+   ++  + ++L          +   
Sbjct: 530 MQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIP-N 588

Query: 523 LKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATS 582
           L+  +        +L E E     +  A      ++L+  +   +       C +  A  
Sbjct: 589 LQNITVRLQDLTEKLSEAEDMLACEQHA----LLRKLQPEQDLQDVRLHLQQCSQELALK 644

Query: 583 LQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQ 642
           L + L   +  L   R RE   S+ V   E         +A  Q+  ++ + +  +L   
Sbjct: 645 L-TALHALQLTLTQERVREHALSIRVLPKEL--------LASRQLALQKMQSEKEQLTYW 695

Query: 643 LQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLA 702
            ++ AQ     + L     E   +  E    + +  S + +R  A  + ++      +  
Sbjct: 696 KEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTV 755

Query: 703 LAAIKALQESESAQRT 718
           L A      + + + T
Sbjct: 756 LKARTEAHFNNNEEVT 771

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	910
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	100.0
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.8
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	99.69
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.54
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.41
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.41
PRK02224	880	chromosome segregation protein; Provisional	99.37
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.36
PRK02224	880	chromosome segregation protein; Provisional	99.32
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.31
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.29
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.22
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.21
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.15
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.05
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.91
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.91
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.89
PRK03918	880	chromosome segregation protein; Provisional	98.79
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.69
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.64
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.62
PRK03918	880	chromosome segregation protein; Provisional	98.6
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.6
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.57
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.55
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.51
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.42
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.4
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.31
PRK04778	569	septation ring formation regulator EzrA; Provision	98.23
PRK04863	1486	mukB cell division protein MukB; Provisional	98.23
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.2
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	98.2
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.18
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.18
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.17
KOG4673	961	consensus Transcription factor TMF, TATA element m	98.12
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	98.11
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.09
PRK01156	895	chromosome segregation protein; Provisional	98.09
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.07
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.98
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.87
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	97.8
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.78
PRK04863	1486	mukB cell division protein MukB; Provisional	97.77
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.72
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.7
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.67
PRK01156	895	chromosome segregation protein; Provisional	97.66
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.59
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.46
PRK11637	428	AmiB activator; Provisional	97.41
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.34
PHA02562	562	46 endonuclease subunit; Provisional	97.33
PRK04778	569	septation ring formation regulator EzrA; Provision	97.3
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.27
KOG0018	1141	consensus Structural maintenance of chromosome pro	97.27
PHA02562	562	46 endonuclease subunit; Provisional	97.24
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.24
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.19
PRK11637	428	AmiB activator; Provisional	97.18
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.16
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.01
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	96.86
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	96.83
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.83
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.83
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	96.7
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	96.68
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.6
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.54
COG4372	499	Uncharacterized protein conserved in bacteria with	96.51
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.51
PRK09039	343	hypothetical protein; Validated	96.5
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.5
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.47
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.41
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.39
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.37
KOG0963	629	consensus Transcription factor/CCAAT displacement	96.35
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.35
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.33
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.26
KOG0963	629	consensus Transcription factor/CCAAT displacement	96.17
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.09
COG4372	499	Uncharacterized protein conserved in bacteria with	96.09
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.06
KOG1003	205	consensus Actin filament-coating protein tropomyos	95.94
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	95.92
PRK09039	343	hypothetical protein; Validated	95.92
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.91
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	95.8
KOG4807	593	consensus F-actin binding protein, regulates actin	95.75
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	95.75
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	95.56
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	95.51
COG4942	420	Membrane-bound metallopeptidase [Cell division and	95.49
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	95.23
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.19
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.12
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	95.09
PF13514	1111	AAA_27: AAA domain	94.94
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	94.86
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	94.36
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	94.22
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.02
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	93.92
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	93.9
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	93.81
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	93.73
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	93.57
COG4477	570	EzrA Negative regulator of septation ring formatio	93.26
COG4942	420	Membrane-bound metallopeptidase [Cell division and	93.24
KOG1003	205	consensus Actin filament-coating protein tropomyos	93.13
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	92.78
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	92.32
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	92.31
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	92.24
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	92.24
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	92.19
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	92.19
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	92.13
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	91.95
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	91.82
PRK10246	1047	exonuclease subunit SbcC; Provisional	91.81
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	91.72
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	91.71
PF10186	302	Atg14: UV radiation resistance protein and autopha	91.62
PF14662	193	CCDC155: Coiled-coil region of CCDC155	91.57
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	91.36
KOG0979	1072	consensus Structural maintenance of chromosome pro	91.33
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	90.93
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	90.84
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	90.62
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	90.51
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	90.49
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.33
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	90.3
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	90.04
KOG0249	916	consensus LAR-interacting protein and related prot	89.95
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	89.75
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	89.71
PF15294	278	Leu_zip: Leucine zipper	89.64
PF13514	1111	AAA_27: AAA domain	89.62
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	89.46
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	89.46
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	89.45
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	89.41
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	89.18
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	88.96
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	88.85
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	88.42
PF14662	193	CCDC155: Coiled-coil region of CCDC155	88.42
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	88.11
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	86.8
COG4477	570	EzrA Negative regulator of septation ring formatio	86.75
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	86.53
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	85.93
KOG0972	384	consensus Huntingtin interacting protein 1 (Hip1)	85.86
PRK12472	508	hypothetical protein; Provisional	85.84
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	84.88
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	84.88
PRK10476	346	multidrug resistance protein MdtN; Provisional	84.69
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	84.61
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	84.55
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	84.25
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	84.1
KOG0249	916	consensus LAR-interacting protein and related prot	83.68
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	83.53
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	83.49
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	83.48
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	83.29
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	83.24
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	83.18
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	83.12
KOG0018	1141	consensus Structural maintenance of chromosome pro	83.07
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	82.5
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	82.25
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	82.08
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	81.77
PF05276	239	SH3BP5: SH3 domain-binding protein 5 (SH3BP5); Int	81.64
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	81.47
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	81.34
PRK11281	1113	hypothetical protein; Provisional	81.13
COG2433	652	Uncharacterized conserved protein [Function unknow	80.99
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	80.92
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	80.46
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	80.43
PRK15178	434	Vi polysaccharide export inner membrane protein Ve	80.06

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=100.00  E-value=5.8e-80  Score=716.24  Aligned_cols=522  Identities=56%  Similarity=0.721  Sum_probs=504.2

Q ss_pred             CCCcccHHHHHHhcCCcccccccccchHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          256 TAPFESVKEVVSKFGGIVDWKAHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNL  335 (910)
Q Consensus       256 ~aPf~SVK~AvslFGe~~~~K~~r~~~~ER~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kL  335 (910)
                      +|||+|||+|||+|||+++||+|  ++++|+..++.||+++|++|++|++++..++.++.+|+.||++||++|++|+++|
T Consensus         1 ~apf~SVk~Avs~FG~~~~~k~~--~~~e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kL   78 (522)
T PF05701_consen    1 SAPFESVKEAVSLFGGSIDWKKH--QSLERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKL   78 (522)
T ss_pred             CCCChHHHHHHHHcCCccccccC--CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999987  5559999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          336 ERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVK  415 (910)
Q Consensus       336 E~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k  415 (910)
                      ++++.++.+|++++|++++|+++|++|+++..++.|+.+|++++.||+.++++|+++++||.+++++|++++++|+.|++
T Consensus        79 e~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~  158 (522)
T PF05701_consen   79 EKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALK  158 (522)
T ss_pred             HHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 002541          416 KAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAK  495 (910)
Q Consensus       416 ~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~eAEe~r~~v~la~eqd~~~~e~eL~qaEEEie~Lr~el~~a~  495 (910)
                      +++++.++++.+.++|++|+.||.++|++|++++.+|.+++++++.+.+++++++..|+.+|.+++++++.|+.++..++
T Consensus       159 ~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k  238 (522)
T PF05701_consen  159 QAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAK  238 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          496 DLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNC  575 (910)
Q Consensus       496 dLeakLeea~~~Le~Lk~ELa~~lE~kL~e~~~ei~~lq~~L~E~ek~~~~~l~esL~sakkELee~K~~Leka~eEl~s  575 (910)
                      +|+++|+.++..+..|+.||..+++.++....            ..+.....+...|.+++.||++++.+|++++.++++
T Consensus       239 ~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~------------~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~  306 (522)
T PF05701_consen  239 DLESKLAEASAELESLQAELEAAKESKLEEEA------------EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASS  306 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------------HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999997766431            123344667778999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Q 002541          576 LKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKS  655 (910)
Q Consensus       576 L~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKk  655 (910)
                      |+..+++|+.+|+++|.++..+++++..+...|.+|..+|.+++.+|+.+...+.+++..+.+|...|+++..|+++|+.
T Consensus       307 L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~  386 (522)
T PF05701_consen  307 LRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKK  386 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCccccchHhhH
Q 002541          656 LAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYY  735 (910)
Q Consensus       656 eae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~e~~~~~~~~~~~~~~~Itls~eEy~  735 (910)
                      .+..++.++.+++.+++++++.|.+++.||+++++|+++||++|++|+++|++|+++.++.+.+.++++++||||++||+
T Consensus       387 ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~  466 (522)
T PF05701_consen  387 EAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYE  466 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999888777779999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          736 ELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAM  791 (910)
Q Consensus       736 ~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~aleeAl  791 (910)
                      +|++|++++++++++||++|++||++||++++++++||+.++++|+++|.+|++|+
T Consensus       467 ~L~~ka~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~~e~~~~k~al~~Al  522 (522)
T PF05701_consen  467 SLSKKAEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKEIEERKEALEEAL  522 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999985

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.80  E-value=7.8e-14  Score=178.79  Aligned_cols=403  Identities=20%  Similarity=0.288  Sum_probs=243.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          370 AARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAH  449 (910)
Q Consensus       370 a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~  449 (910)
                      ....++-..+.+|..+...++.+..+-..++.++..+...++.+.+.++++++..+.++.++.+|+..|..+.++++...
T Consensus      1467 ~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE 1546 (1930)
T KOG0161|consen 1467 QLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEE 1546 (1930)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            34455556667788888889999999999999999999999999999999999999999999999999999999988877


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHH-HH--HHHHHH-------HHHHH
Q 002541          450 AAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSA-KDLRSKLDTAS-AL--LLDLKA-------ELSAY  518 (910)
Q Consensus       450 aa~~eAEe~r~~v~la~eqd~~~~e~eL~qaEEEie~Lr~el~~a-~dLeakLeea~-~~--Le~Lk~-------ELa~~  518 (910)
                      .+..     +..+.+  .+....+++.|..++++++..+.++.+. .+|++.|++=. .+  ...+++       +|...
T Consensus      1547 ~~~l-----r~~~~~--~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ 1619 (1930)
T KOG0161|consen 1547 DKKL-----RLQLEL--QQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQ 1619 (1930)
T ss_pred             hHHH-----HHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHH
Confidence            6543     334444  3466778899999999999999988766 77777665321 11  122222       22222


Q ss_pred             HHhhhhhhhccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          519 MESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIR  598 (910)
Q Consensus       519 lE~kL~e~~~ei~~lq~~L~E~ek~~~~~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelK  598 (910)
                      ++.    ....+..+++        ....++..+..+..++++.....+.+...+......+..|++|++.++..++.+-
T Consensus      1620 ld~----ank~~~d~~K--------~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~ 1687 (1930)
T KOG0161|consen 1620 LDH----ANKANEDAQK--------QLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALE 1687 (1930)
T ss_pred             HHH----HHHhhHHHHH--------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            221    1000000111        1233344455556666666666666666666666666666666666666665553


Q ss_pred             HHHhhhHHHHHhHHHHHH--------------HHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          599 QREGMASVAVASLEAELD--------------RTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEEL  664 (910)
Q Consensus       599 eke~~a~~eI~sL~eELe--------------r~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL  664 (910)
                      .-...+..+...+.+.++              ++..+|..+++..++............+++..++......+..-+...
T Consensus      1688 Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~ 1767 (1930)
T KOG0161|consen 1688 RARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETS 1767 (1930)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            333333333333333222              233333333332222211111111111222222221111111111111


Q ss_pred             HHHHHHHHHHH----------------------hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCC
Q 002541          665 HKAKEEAEQAK----------------------AGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVD  722 (910)
Q Consensus       665 ~~lkeEaE~aK----------------------aeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~e~~~~~~~~~~~  722 (910)
                      .++......+.                      ..|..++.|+..+..+++...   ..-.+.++.+-..+        .
T Consensus      1768 ~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~Learir~LE~~l~~E~---~~~~e~~k~~rk~e--------r 1836 (1930)
T KOG0161|consen 1768 QKLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIAKLEARIRELESELEGEQ---RRKAEAIKGLRKKE--------R 1836 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHhHhh---hhhHHHhHHHHHHH--------H
Confidence            11111111111                      223333333333333332211   11111122211110        1


Q ss_pred             CCCccccchHhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 002541          723 SPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKL  802 (910)
Q Consensus       723 ~~~~Itls~eEy~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~aleeAleraE~Ae~aK~  802 (910)
                      .-.-++++++|+.....++++..+..+.|+..+++|+++|++..+..+.+++..++       ++++|.+|++.|+    
T Consensus      1837 ~vkEl~~q~eed~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~-------ele~a~erad~~e---- 1905 (1930)
T KOG0161|consen 1837 RVKELQFQVEEDKKNIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQR-------ELEEAEERADTAE---- 1905 (1930)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH----
Confidence            12348999999999999999999999999999999999999999999999999999       9999999999999    


Q ss_pred             hHHHHHHHHHHHHH
Q 002541          803 GIEQELRKWRAEHE  816 (910)
Q Consensus       803 avE~ELRkwR~e~e  816 (910)
                         ++|.+||.++.
T Consensus      1906 ---~~~~~lr~k~r 1916 (1930)
T KOG0161|consen 1906 ---SELNKLRSKLR 1916 (1930)
T ss_pred             ---HHHHHHHHHHH
Confidence               99999998744

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=99.69  E-value=5e-11  Score=140.28  Aligned_cols=432  Identities=26%  Similarity=0.293  Sum_probs=276.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHHHHHHHHHHH-----
Q 002541          316 QVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDA--SVAARAQLEVAKARHVAAVSE-----  388 (910)
Q Consensus       316 qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~--~~a~k~eLE~ar~q~a~~laE-----  388 (910)
                      ....+|..++..+..++..|..+..++.++..+.+.++--+.+|-..+....  ........+.++-|....-..     
T Consensus        31 ~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~  110 (522)
T PF05701_consen   31 EKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEA  110 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccc
Confidence            4555677777777777778888888888888888888888888766544311  112223333333222211111     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          389 LKSVKDEVESLRKDYASLVTEKDIAVKKAE--------------EAISASKEVEKTVEELTIELIATKESLESAHAAHLE  454 (910)
Q Consensus       389 L~svKeELekLrqEl~~l~eeK~~A~k~Ae--------------EA~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~e  454 (910)
                      -...+.+|+..+.+|..++.+.+.+-+...              .+...+.........-...+..|...|..++..+..
T Consensus       111 ~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~  190 (522)
T PF05701_consen  111 SVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLES  190 (522)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111445555555555555544444433222              222222222222222222223333333333222221


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhhhcccc
Q 002541          455 AEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQI-LSAKDLRSKLDTASALLLDLKAEL--SAYMESKLKEESNEEG  531 (910)
Q Consensus       455 AEe~r~~v~la~eqd~~~~e~eL~qaEEEie~Lr~el-~~a~dLeakLeea~~~Le~Lk~EL--a~~lE~kL~e~~~ei~  531 (910)
                      +...                  -.+++++...+..+. .....|+..|..+...+..|+.++  +..++.+|..+..   
T Consensus       191 ~~~a------------------~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~---  249 (522)
T PF05701_consen  191 AKLA------------------HIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASA---  249 (522)
T ss_pred             HHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            1110                  011111111111110 122578888888899999998854  4445556554432   


Q ss_pred             CCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 002541          532 HSNGELEEPERKTHTDIQAAVASAKKELEEVKL-NIE---KATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVA  607 (910)
Q Consensus       532 ~lq~~L~E~ek~~~~~l~esL~sakkELee~K~-~Le---ka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~e  607 (910)
                                         .+..++.||..+.. .+.   ..+.....++..+.+++.+|+..+..|..++.........
T Consensus       250 -------------------~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~  310 (522)
T PF05701_consen  250 -------------------ELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRAS  310 (522)
T ss_pred             -------------------HHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               23345555555444 222   2455667778889999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhcHHH
Q 002541          608 VASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQ-------AKSLAQAAGEELHKAKEEAEQAKAGAST  680 (910)
Q Consensus       608 I~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEe-------AKkeae~ae~EL~~lkeEaE~aKaeI~t  680 (910)
                      +.+|..+|.+.+.++..++.++..+...+..|..+|..+..+++.       ++.....+...|..+..|++.++.....
T Consensus       311 vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~  390 (522)
T PF05701_consen  311 VESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEE  390 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999855       4445567888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCC----------CCCCCccccch-HhhHHHHHHHHHHHHHHh
Q 002541          681 IESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDD----------VDSPTGVTLSL-EEYYELSKRAHEAEEQAN  749 (910)
Q Consensus       681 aE~rL~aA~KElEAAKAsEa~Ala~ikaL~e~~~~~~~~~----------~~~~~~Itls~-eEy~~L~~ka~Eaee~a~  749 (910)
                      +..++..++.+++.+|++-.-+-..|.+.......++++.          +++......+. ..+...+-...++..+. 
T Consensus       391 ~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~-  469 (522)
T PF05701_consen  391 AKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYESLS-  469 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHHHHH-
Confidence            9999999999999999888888888887665444333221          11111111111 12223333455666655 


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541          750 MRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAK  798 (910)
Q Consensus       750 kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~aleeAleraE~Ae  798 (910)
                                ..|.+.+..+.+|+..++.+|+..|....+++.|++.+.
T Consensus       470 ----------~ka~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~  508 (522)
T PF05701_consen  470 ----------KKAEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEEAM  508 (522)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      667788889999999999999999999999999999998

Several sequences in this family are described as being myosin heavy chain-like.

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.54  E-value=7.4e-16  Score=189.58  Aligned_cols=525  Identities=21%  Similarity=0.281  Sum_probs=25.0

Q ss_pred             HHHh-cCCcccccccc-cchHH-------HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          265 VVSK-FGGIVDWKAHR-MQTVE-------RRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNL  335 (910)
Q Consensus       265 Avsl-FGe~~~~K~~r-~~~~E-------R~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kL  335 (910)
                      .+++ .+++.+||+.. .....       =+.-+...|..+++.+..++......+..+.++..|++.++..++......
T Consensus       293 qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~  372 (859)
T PF01576_consen  293 QLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAA  372 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444 44777887432 11111       112345567788888888888888888888888877777776666655443


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          336 ERAQTEEHQAKQDSELAKLRVEEMEQG--IADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIA  413 (910)
Q Consensus       336 E~a~~e~~~A~e~sE~ak~r~~ELEqg--ia~~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A  413 (910)
                      ..+...+...-....-.+.++.++...  .+......+..++-..+..|......+..+..+...|+.++.++.+..+.+
T Consensus       373 ~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~  452 (859)
T PF01576_consen  373 AELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDA  452 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence            333332222222222222333333221  122223445666777777777788888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 002541          414 VKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILS  493 (910)
Q Consensus       414 ~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~eAEe~r~~v~la~eqd~~~~e~eL~qaEEEie~Lr~el~~  493 (910)
                      .+.++++.+..+.++..+.+|...|..+.+.|.....++.     |+.+.|  .+.+..++++|...+++++.++..+.+
T Consensus       453 ~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~l-----Rl~~el--~~~r~e~er~l~eKeeE~E~~Rr~~qr  525 (859)
T PF01576_consen  453 GKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKL-----RLQVEL--QQLRQEIERELQEKEEEFEETRRNHQR  525 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH--HHHHHHHHHHHHhhhhHHHHHHHhhHH
Confidence            9999999999999999999999999999999888777654     566666  446778899999999999999998875


Q ss_pred             H-HHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhhhccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          494 A-KDLRSKLDTASAL---LLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKA  569 (910)
Q Consensus       494 a-~dLeakLeea~~~---Le~Lk~ELa~~lE~kL~e~~~ei~~lq~~L~E~ek~~~~~l~esL~sakkELee~K~~Leka  569 (910)
                      . .+|++.|+.=...   +...++.    ||..+.+...-.........+..+ ....++..+..++.+|++.......+
T Consensus       526 ~l~~le~~LE~E~k~r~~~~r~kkK----LE~~l~eLe~~ld~~n~~~~e~~k-~~kk~q~qlkdlq~~lee~~~~~~~~  600 (859)
T PF01576_consen  526 QLESLEAELEEERKERAEALREKKK----LESDLNELEIQLDHANRANEEAQK-QLKKLQAQLKDLQRELEEAQRAREEL  600 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            5 7777777542111   1222221    121111110000000000001111 12233334445555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHH--------------HHHHHHHHHHHHHHHHh
Q 002541          570 TAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRT--------------RSEIALVQMKEKEAREK  635 (910)
Q Consensus       570 ~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~--------------ksELe~~kakeeeare~  635 (910)
                      ...+..+...+..|..+|+.+...++.+......+......+.+++..+              ..++..+.....+....
T Consensus       601 ~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~  680 (859)
T PF01576_consen  601 REQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSE  680 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555556666666666666655554433333333333333333332              22222222222221111


Q ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh---h
Q 002541          636 TVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEA-ARASEKLALAAIKALQ---E  711 (910)
Q Consensus       636 ~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEA-AKAsEa~Ala~ikaL~---e  711 (910)
                      ...+.....++..++.....++..-+.....+...--.+...+.++..+|..+...... ++..-..--..|+-|.   +
T Consensus       681 ~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le  760 (859)
T PF01576_consen  681 AEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELE  760 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHH
Confidence            11111111111111111111111111111111111111122222333333322222111 0111111111111121   1


Q ss_pred             hhhhcccCC-------CCCCCccccchHhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          712 SESAQRTDD-------VDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRK  784 (910)
Q Consensus       712 ~~~~~~~~~-------~~~~~~Itls~eEy~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~k  784 (910)
                      .+...+...       .....-++|+++|......++++..+.++.||..+++|+++|++..++.+.+++.+++      
T Consensus       761 ~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eeaEe~~~~~~~k~Rk~q~------  834 (859)
T PF01576_consen  761 SEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEAEEEASRNLAKYRKLQR------  834 (859)
T ss_dssp             ----------------------------------------------------------------------SSSS------
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH------
Confidence            111111110       1244568999999999999999999999999999999999999999999999999999      


Q ss_pred             HHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 002541          785 EALKVAMEKAEKAKEGKLGIEQELRKWRAEH  815 (910)
Q Consensus       785 ~aleeAleraE~Ae~aK~avE~ELRkwR~e~  815 (910)
                       .|++|.+++++|+       ++|.+||.++
T Consensus       835 -elee~~e~~~~~e-------~~l~~lr~~~  857 (859)
T PF01576_consen  835 -ELEEAEERAEAAE-------RELNKLRAKS  857 (859)
T ss_dssp             -HHHHHTCCHHHHH-------HHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHH-------HHHHHHHhhc
Confidence             8999999999999       9999999763

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.41  E-value=6.4e-06  Score=104.44  Aligned_cols=67  Identities=21%  Similarity=0.333  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHH
Q 002541          552 VASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRT  618 (910)
Q Consensus       552 L~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~  618 (910)
                      +..+..+++.+...+..+..++..+...+..++.++......+..+..........+..+..++..+
T Consensus       679 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  745 (1179)
T TIGR02168       679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL  745 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444443333333333333333333333333333333333333333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.41  E-value=8.1e-07  Score=115.72  Aligned_cols=268  Identities=20%  Similarity=0.289  Sum_probs=136.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Q 002541          546 TDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALV  625 (910)
Q Consensus       546 ~~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~  625 (910)
                      ..++.....++.|++.+...+.....-...+.........-|...|..++.+...+..+......+..++.++...++.+
T Consensus      1403 ~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~ 1482 (1930)
T KOG0161|consen 1403 ASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEEL 1482 (1930)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            33344444445555555555555544444444444444444444444444444444445555555555555555555444


Q ss_pred             HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-------------------------H
Q 002541          626 QMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGAS-------------------------T  680 (910)
Q Consensus       626 kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~-------------------------t  680 (910)
                      ....+..+..-..+..++.++..-..++.+.+..++..+..+..+...++..+.                         .
T Consensus      1483 ~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e 1562 (1930)
T KOG0161|consen 1483 LEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSE 1562 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            443333333333333444444444444433333333333333333333333222                         2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCC-------CCccccchHhhHHHHHHHHHHHHHHhHHHH
Q 002541          681 IESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVDS-------PTGVTLSLEEYYELSKRAHEAEEQANMRVV  753 (910)
Q Consensus       681 aE~rL~aA~KElEAAKAsEa~Ala~ikaL~e~~~~~~~~~~~~-------~~~Itls~eEy~~L~~ka~Eaee~a~kKVa  753 (910)
                      ++.+|.....+++..+-.-...++.+.+..+.+..++......       -+.+.++++.-.....-++..-...+.-+.
T Consensus      1563 ~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k 1642 (1930)
T KOG0161|consen 1563 IERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLK 1642 (1930)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Confidence            3455555556667777777777887777666555543322111       223444544444444444444444445555


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 002541          754 AAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRA  813 (910)
Q Consensus       754 ~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~aleeAleraE~Ae~aK~avE~ELRkwR~  813 (910)
                      .+..+++.+..+..+++..+..+.+.+.....++++-....+.+++++.-+|.++--.+.
T Consensus      1643 ~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e 1702 (1930)
T KOG0161|consen 1643 ELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAE 1702 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            566666677777777776666666656556666666666666666777777777664443

>PRK02224 chromosome segregation protein; Provisional

Probab=99.37  E-value=2.5e-06  Score=106.43  Aligned_cols=44  Identities=9%  Similarity=0.032  Sum_probs=18.9

Q ss_pred             hHhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002541          731 LEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNK  778 (910)
Q Consensus       731 ~eEy~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~  778 (910)
                      -+.|..+..+...+.    ..+......++.++.........+..+..
T Consensus       645 ~~~~e~l~~~~~~~~----~~~~~l~~~l~~~~~~~~~l~~~i~~~~~  688 (880)
T PRK02224        645 EARIEEAREDKERAE----EYLEQVEEKLDELREERDDLQAEIGAVEN  688 (880)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444554444443332    33344444444444444444444444333

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.36  E-value=7.5e-08  Score=122.12  Aligned_cols=61  Identities=28%  Similarity=0.489  Sum_probs=50.8

Q ss_pred             cchHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          280 MQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQA  345 (910)
Q Consensus       280 ~~~~ER~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A  345 (910)
                      +.|.+|+..+ .++.+    +..|+.++..+.....++...+.+.+..+.+|..+++.+...+..+
T Consensus       150 ~~~~~r~~~~-~~~~g----~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~  210 (1164)
T TIGR02169       150 MSPVERRKII-DEIAG----VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKA  210 (1164)
T ss_pred             CCHHHHHHHH-HHHhC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566788777 45777    8889999999999999999999999999999999998888887666

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.32  E-value=1.1e-05  Score=100.70  Aligned_cols=74  Identities=19%  Similarity=0.309  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002541          286 RKYVEQELERSHEEMPEYRKRSEAAEVAKNQVL---KELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEM  359 (910)
Q Consensus       286 ~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal---~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~EL  359 (910)
                      ...++.++..++.++..++.++..+...+..+.   .++......++.+...++.++.....+....+....++.++
T Consensus       208 l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~  284 (880)
T PRK02224        208 LNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDL  284 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355566666666666666666666555554333   33333334444444444444444444433333333333333

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.31  E-value=2.4e-05  Score=99.35  Aligned_cols=9  Identities=33%  Similarity=0.479  Sum_probs=3.2

Q ss_pred             HhhHHHHHH
Q 002541          297 HEEMPEYRK  305 (910)
Q Consensus       297 qeeL~k~Ke  305 (910)
                      +.++..+..
T Consensus       252 ~~~~~~~~~  260 (1179)
T TIGR02168       252 EEELEELTA  260 (1179)
T ss_pred             HHHHHHHHH
Confidence            333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.29  E-value=2.3e-07  Score=118.89  Aligned_cols=139  Identities=29%  Similarity=0.409  Sum_probs=92.1

Q ss_pred             cchHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002541          280 MQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEM  359 (910)
Q Consensus       280 ~~~~ER~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~EL  359 (910)
                      +.|.+|+..++ |..+    +.+|+.....++.....+..-|++...++.+|..+|+.+..+...|        .++..+
T Consensus       152 ~kp~err~iiE-EaaG----v~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a--------~~y~~l  218 (1163)
T COG1196         152 AKPEERRKLIE-EAAG----VSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKA--------ERYQEL  218 (1163)
T ss_pred             CCHHHHHHHHH-HHhc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence            46778888654 5888    8999999999999999999999999999999999999999999988        677777


Q ss_pred             HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          360 EQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIEL  438 (910)
Q Consensus       360 Eqgia~~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL  438 (910)
                      ...+...       +......+|.....+|..+.+++..++.++..+......+.+.+..+......+...+..++.++
T Consensus       219 ~~e~~~~-------~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~  290 (1163)
T COG1196         219 KAELREL-------ELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEEL  290 (1163)
T ss_pred             HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6554432       12222223444444555555555555555555555444444444444444444444444443333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.22  E-value=2.3e-05  Score=95.89  Aligned_cols=371  Identities=15%  Similarity=0.215  Sum_probs=192.4

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 002541          291 QELERSHEEMPEYRKRSEAAEVAKNQVLKEL--------DQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQG  362 (910)
Q Consensus       291 ~EL~~~qeeL~k~Keqle~aE~~k~qal~EL--------e~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqg  362 (910)
                      .+|..+|.+...++..++.+.....+...++        ++.+..-++...+|..++.+......+.+.+..-+..|+..
T Consensus         3 ~ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeE   82 (775)
T PF10174_consen    3 AQLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEE   82 (775)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4566666666666666666666655555544        34666667777777777777666655666666666666665


Q ss_pred             hhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          363 IAD-DASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIAT  441 (910)
Q Consensus       363 ia~-~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~l  441 (910)
                      +.. .....++.+++.+...+...-. |+.+..++..|+.+++.+..+-......++++......+.........+|..|
T Consensus        83 Lr~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL  161 (775)
T PF10174_consen   83 LRAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKL  161 (775)
T ss_pred             HHHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            521 1123466677777766665555 88888888888888887777777777777777777777777777777777777


Q ss_pred             HHHHHHH-------HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHH
Q 002541          442 KESLESA-------HAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSA----------KDLRSKLDTA  504 (910)
Q Consensus       442 KEsLe~a-------~aa~~eAEe~r~~v~la~eqd~~~~e~eL~qaEEEie~Lr~el~~a----------~dLeakLeea  504 (910)
                      .+.|+..       .... .+-. ++   ...+..+..++..|...+.+...+++++...          ..|+.-++..
T Consensus       162 ~e~L~~~g~~~~~~~~~~-~~~~-~~---~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~K  236 (775)
T PF10174_consen  162 QEMLQSKGLSAEAEEEDN-EALR-RI---REAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEK  236 (775)
T ss_pred             HHHHhhcCCcccchhhhh-HHHH-HH---HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHH
Confidence            7766421       0000 0000 00   0001112223333333344433332222221          3456666666


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCc--hhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          505 SALLLDLKAELSAYMESKLKEESNEEGHSNGELE--EPERK----THTDIQAAVASAKKELEEVKLNIEKATAEVNCLKV  578 (910)
Q Consensus       505 ~~~Le~Lk~ELa~~lE~kL~e~~~ei~~lq~~L~--E~ek~----~~~~l~esL~sakkELee~K~~Leka~eEl~sL~~  578 (910)
                      +..+..|.+-|-. ++.       +|..|+..+.  ...+.    ....-.......+..++.++..|.....|+..++.
T Consensus       237 d~ki~~lEr~l~~-le~-------Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt  308 (775)
T PF10174_consen  237 DTKIASLERMLRD-LED-------EIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQT  308 (775)
T ss_pred             HHHHHHHHHHHHH-HHH-------HHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6555555432222 111       1111111110  00000    00000111122333456666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Q 002541          579 AATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQ  658 (910)
Q Consensus       579 ~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae  658 (910)
                      .+..+.......+.-++.++..+.........|..++..++.+|+.......+....+..+..++..+..|+.+.+-...
T Consensus       309 ~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d  388 (775)
T PF10174_consen  309 RLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLD  388 (775)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66655555555555555555555555555555555555555555555444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 002541          659 AAGEELHKAKEEAEQAK  675 (910)
Q Consensus       659 ~ae~EL~~lkeEaE~aK  675 (910)
                      ....++..+...++.+.
T Consensus       389 ~~e~ki~~Lq~kie~Le  405 (775)
T PF10174_consen  389 KKERKINVLQKKIENLE  405 (775)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444444333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.21  E-value=1.8e-05  Score=96.93  Aligned_cols=202  Identities=20%  Similarity=0.253  Sum_probs=110.0

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh--hhhh
Q 002541          289 VEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQG--IADD  366 (910)
Q Consensus       289 ~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqg--ia~~  366 (910)
                      -..+|..++.++.........+......+..+| ++.+.+..|...++.++.+...... .+.+...+..|...  -...
T Consensus        51 e~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~  128 (775)
T PF10174_consen   51 EAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQR  128 (775)
T ss_pred             HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHH
Confidence            345577777777777777777777777888888 8888888787777777766554444 55555555555321  1111


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          367 ASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYA------SLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIA  440 (910)
Q Consensus       367 ~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~------~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~  440 (910)
                      ....++..|+-+..+....=.+|+.+-.+|.+|...|.      .....-+.+..++.++......++..++..-.+...
T Consensus       129 El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~  208 (775)
T PF10174_consen  129 ELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHME  208 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            22334555555555666666666666666666666553      122223344455555555555555555555555555


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHhh-hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002541          441 TKESLESAHA-AHLEAEEQRIGAAM-ARDQDSHLWEKELKQAEEELQKLTQQIL  492 (910)
Q Consensus       441 lKEsLe~a~a-a~~eAEe~r~~v~l-a~eqd~~~~e~eL~qaEEEie~Lr~el~  492 (910)
                      +++.+..... ....+.-..+...+ ..+-....+++-|..++.+|..|+..+.
T Consensus       209 ~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~  262 (775)
T PF10174_consen  209 AREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGE  262 (775)
T ss_pred             hhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            5444433111 00000000001000 0111234566777777777777766544

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.15  E-value=0.00013  Score=93.13  Aligned_cols=38  Identities=13%  Similarity=0.256  Sum_probs=14.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          299 EMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLE  336 (910)
Q Consensus       299 eL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE  336 (910)
                      ++..++.++...+........++...+..+..+...++
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  332 (1164)
T TIGR02169       295 KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEID  332 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR00606 rad50 rad50

Probab=99.05  E-value=0.00043  Score=90.43  Aligned_cols=67  Identities=22%  Similarity=0.192  Sum_probs=29.7

Q ss_pred             HHHhHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 002541          746 EQANMRVVAAISQIEVAKASELRSLERLEEV--NKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAE  814 (910)
Q Consensus       746 e~a~kKVa~A~aQvEeAkese~~~l~Kle~~--~~Eie~~k~aleeAleraE~Ae~aK~avE~ELRkwR~e  814 (910)
                      +..+..+......+......+..+..-+...  ..++...+..+..-  ..+.++.....+..+++.|+.+
T Consensus       994 ~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l--~~~~~~~~~~~~~~e~~~l~~~ 1062 (1311)
T TIGR00606       994 EKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQH--LKEMGQMQVLQMKQEHQKLEEN 1062 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccHHHHHHHHHHHHHH
Confidence            3344445555555555544444444444444  44444433333322  2233334444455555555543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00606 rad50 rad50

Probab=98.91  E-value=0.0012  Score=86.28  Aligned_cols=138  Identities=10%  Similarity=0.136  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002541          552 VASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKE  631 (910)
Q Consensus       552 L~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeee  631 (910)
                      ...+..+|++++..+.....++..+...+..|..++.....++..++.........   +..+++..+..+..+..--..
T Consensus       883 r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  959 (1311)
T TIGR00606       883 RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKK---AQDKVNDIKEKVKNIHGYMKD  959 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            34455555556666666666666666666666666666666665555444433322   223333333333222222222


Q ss_pred             HHHhh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 002541          632 AREKT-VELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEI  692 (910)
Q Consensus       632 are~~-~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KEl  692 (910)
                      +.... .+.+..|.++..++..+...+..++.++..+..++..++..+......-......+
T Consensus       960 i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL 1021 (1311)
T TIGR00606       960 IENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNL 1021 (1311)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22211 13455566666666666666666666666666666666666665555554444444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.91  E-value=0.0012  Score=85.60  Aligned_cols=57  Identities=21%  Similarity=0.279  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          288 YVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQ  344 (910)
Q Consensus       288 ~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~  344 (910)
                      .+..++....+++..++.++.........+..++-..+..+.++..++..+......
T Consensus       257 ~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~  313 (1163)
T COG1196         257 ELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEE  313 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355556666666666666666666655555555555555555555555444444333

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.89  E-value=0.00094  Score=83.10  Aligned_cols=87  Identities=20%  Similarity=0.262  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          370 AARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAH  449 (910)
Q Consensus       370 a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~  449 (910)
                      ..+.+++..+....-....+..++.+++-.+-+|..+......+.++.+++...+........+...+|..++..|.+.+
T Consensus       476 ~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k  555 (1293)
T KOG0996|consen  476 GIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLK  555 (1293)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            34555555566666677777788888888888888888888888888888888888777777777777777777777765


Q ss_pred             HHHHHHH
Q 002541          450 AAHLEAE  456 (910)
Q Consensus       450 aa~~eAE  456 (910)
                      ....+++
T Consensus       556 ~e~~~~~  562 (1293)
T KOG0996|consen  556 QELKEKE  562 (1293)
T ss_pred             HHHHHHH
Confidence            5444443

>PRK03918 chromosome segregation protein; Provisional

Probab=98.79  E-value=0.002  Score=80.65  Aligned_cols=43  Identities=23%  Similarity=0.240  Sum_probs=20.5

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          293 LERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNL  335 (910)
Q Consensus       293 L~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kL  335 (910)
                      +..+++.+..++.++............++...+..+..+...|
T Consensus       188 l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l  230 (880)
T PRK03918        188 TENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV  230 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555555555544444444444444433

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.69  E-value=0.0055  Score=80.18  Aligned_cols=256  Identities=17%  Similarity=0.189  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHhHHHHHHHHHHHHHHHHH
Q 002541          552 VASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREG----MASVAVASLEAELDRTRSEIALVQM  627 (910)
Q Consensus       552 L~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~----~a~~eI~sL~eELer~ksELe~~ka  627 (910)
                      |.....++..++..|..+..++..++..+.++..=|..++..|+.++....    ....++-+|+.++..+..++..+..
T Consensus       907 Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~  986 (1822)
T KOG4674|consen  907 LRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLRE  986 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444457777788888888887777777777777777777763222    2223344444444444444444432


Q ss_pred             HHH----HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-------HHHHHHHHHHH
Q 002541          628 KEK----EAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRL-------TAARKEIEAAR  696 (910)
Q Consensus       628 kee----eare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL-------~aA~KElEAAK  696 (910)
                      ...    .-.....++..++..+..|...+...+..+...+..++.........+..+...+       .+....+-..+
T Consensus       987 e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ 1066 (1822)
T KOG4674|consen  987 ELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLR 1066 (1822)
T ss_pred             HHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211    1122334556666666666666666666665555555544443332222222222       23333334444


Q ss_pred             HHHHHHHHHHHHhhhhhhhcccCCCCCCCccccc----hHhhHHHHHHHHHHHH---HHhHHHHHHHHhHHHHHHHHHHH
Q 002541          697 ASEKLALAAIKALQESESAQRTDDVDSPTGVTLS----LEEYYELSKRAHEAEE---QANMRVVAAISQIEVAKASELRS  769 (910)
Q Consensus       697 AsEa~Ala~ikaL~e~~~~~~~~~~~~~~~Itls----~eEy~~L~~ka~Eaee---~a~kKVa~A~aQvEeAkese~~~  769 (910)
                      ..-+.+-+++..|-..-......-+.....+-..    -.|-..+..+...++.   +.+-.|...-.++-+.+-+  -.
T Consensus      1067 ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S--~~ 1144 (1822)
T KOG4674|consen 1067 EEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLS--AM 1144 (1822)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc--cc
Confidence            4444444444444322222111001111111000    0011111222222221   1112222221111110000  11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 002541          770 LERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHE  816 (910)
Q Consensus       770 l~Kle~~~~Eie~~k~aleeAleraE~Ae~aK~avE~ELRkwR~e~e  816 (910)
                      ...+..+..=|--.|.+.+.+..+.+.+.       .+..+++.++.
T Consensus      1145 ~~g~sdL~~iv~~LR~Ekei~~tk~~~lk-------~e~~~L~qq~~ 1184 (1822)
T KOG4674|consen 1145 LLGLSDLQNIVSFLRKEKEIAETKLDTLK-------RENARLKQQVA 1184 (1822)
T ss_pred             ccchHHHHHHHHHHHhHHHHHhhhHHHHH-------HHHHHHHHHHH
Confidence            11144556666667778889999999998       89999998877

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=98.64  E-value=5.1e-09  Score=129.75  Aligned_cols=260  Identities=18%  Similarity=0.217  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002541          551 AVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEK  630 (910)
Q Consensus       551 sL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakee  630 (910)
                      .....-+.|.+.+..+.....+...++.....+..++..++..++.+......+......|..+|..+...+........
T Consensus       378 Kqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~  457 (859)
T PF01576_consen  378 KQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH  457 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH
Confidence            33344455555666666666666666666666667777777777777666666666666666666666555544322222


Q ss_pred             HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002541          631 EAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQ  710 (910)
Q Consensus       631 eare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~  710 (910)
                      +.....-.|..++..+...++++...+.........+.-++.++|..+   +.+|..-..+++..|-.=...|..|.+-.
T Consensus       458 eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~---er~l~eKeeE~E~~Rr~~qr~l~~le~~L  534 (859)
T PF01576_consen  458 ELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEI---ERELQEKEEEFEETRRNHQRQLESLEAEL  534 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhHHHHHHHhhHHHHHHHHhHH
Confidence            222222233334444444444444444445555555555555555443   34666666677777777777888888855


Q ss_pred             hhhhhcccCC-------CCCCCccccchHhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          711 ESESAQRTDD-------VDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATR  783 (910)
Q Consensus       711 e~~~~~~~~~-------~~~~~~Itls~eEy~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~  783 (910)
                      +.+...+...       ...-+.+.++++........+...-......+..+..+++.+......+...+..+.+.+...
T Consensus       535 E~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l  614 (859)
T PF01576_consen  535 EEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRAL  614 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544443221       112233555555555444444444455666677777777777777776666666666666666


Q ss_pred             HHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 002541          784 KEALKVAMEKAEKAKEGKLGIEQELRKWRA  813 (910)
Q Consensus       784 k~aleeAleraE~Ae~aK~avE~ELRkwR~  813 (910)
                      ...++++....+.|..++..+|.+|.-...
T Consensus       615 ~~elee~~~~~~~a~r~rk~aE~el~e~~~  644 (859)
T PF01576_consen  615 QAELEELREALEQAERARKQAESELDELQE  644 (859)
T ss_dssp             ------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677777777777777788888877754443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.62  E-value=0.0029  Score=74.76  Aligned_cols=102  Identities=21%  Similarity=0.254  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Q 002541          570 TAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQE  649 (910)
Q Consensus       570 ~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~E  649 (910)
                      ..+...++..++..+.++.+++.++..+.+-+..-..+-..|..+|.+.+           .+.      ...|.....+
T Consensus       356 ~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~-----------D~n------~vqlsE~~re  418 (546)
T PF07888_consen  356 AQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK-----------DCN------RVQLSENRRE  418 (546)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hhh------HHHHHHHHHH
Confidence            33444555566666777777777777776666666666666666664322           111      1255555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Q 002541          650 ADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAA  688 (910)
Q Consensus       650 aEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA  688 (910)
                      +.+.+..+..++.|-..+..|...+..-|..++.||..+
T Consensus       419 l~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~  457 (546)
T PF07888_consen  419 LQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV  457 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666666666666666677777777777777777777665

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK03918 chromosome segregation protein; Provisional

Probab=98.60  E-value=0.0063  Score=76.26  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 002541          552 VASAKKELEEVKLNIEKATAEV  573 (910)
Q Consensus       552 L~sakkELee~K~~Leka~eEl  573 (910)
                      +..+..++..++..+..+..++
T Consensus       461 i~~l~~~~~~l~~~~~~l~~~~  482 (880)
T PRK03918        461 LKRIEKELKEIEEKERKLRKEL  482 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444333333333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.60  E-value=0.0091  Score=77.73  Aligned_cols=227  Identities=18%  Similarity=0.242  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH-HH
Q 002541          554 SAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEK-EA  632 (910)
Q Consensus       554 sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakee-ea  632 (910)
                      .++.+++.+...|.........+...+......+...+.++..++..+..+...+..|..+...++.++........ .+
T Consensus       604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  683 (1201)
T PF12128_consen  604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQI  683 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666666666666666666666666666666666666666666666666666666666666555443321 22


Q ss_pred             HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002541          633 REKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAK-AGASTIESRLTAARKEIEAARASEKLALAAIKALQE  711 (910)
Q Consensus       633 re~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aK-aeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~e  711 (910)
                      ......+..++.++..+.+.......   .....+..+..... .........+.....++.+.++.-..-+..|+.-..
T Consensus       684 ~~~l~~l~~~l~~~~~e~~~~~~~~~---~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~  760 (1201)
T PF12128_consen  684 EEQLNELEEELKQLKQELEELLEELK---EQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYN  760 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444433333221   22222221211111 122334444555555555555544445555555443


Q ss_pred             hhhhcccCCCCCCCccccchHhhHH----HHHHHHHHHHHHhHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHH
Q 002541          712 SESAQRTDDVDSPTGVTLSLEEYYE----LSKRAHEAEEQANMRVVAAISQIEVAKAS-------ELRSLERLEEVNKEI  780 (910)
Q Consensus       712 ~~~~~~~~~~~~~~~Itls~eEy~~----L~~ka~Eaee~a~kKVa~A~aQvEeAkes-------e~~~l~Kle~~~~Ei  780 (910)
                      .+-.+...+   +.    .+..|..    |...++.. +.-..+|..|..|+..-=..       ......++..+..++
T Consensus       761 ~eL~~~GvD---~~----~I~~l~~~i~~L~~~l~~i-e~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  832 (1201)
T PF12128_consen  761 QELAGKGVD---PE----RIQQLKQEIEQLEKELKRI-EERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQEL  832 (1201)
T ss_pred             HHHHhCCCC---HH----HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence            333322111   11    1233332    22223222 22345677777776654332       334444444444444


Q ss_pred             HHHHHHHHHHH
Q 002541          781 ATRKEALKVAM  791 (910)
Q Consensus       781 e~~k~aleeAl  791 (910)
                      ......+....
T Consensus       833 ~~l~~~~~~~~  843 (1201)
T PF12128_consen  833 QELEQELNQLQ  843 (1201)
T ss_pred             HHHHHHHHHHH
Confidence            44444443333

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.57  E-value=0.0067  Score=74.76  Aligned_cols=126  Identities=22%  Similarity=0.257  Sum_probs=79.7

Q ss_pred             ccccchHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002541          277 AHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRV  356 (910)
Q Consensus       277 ~~r~~~~ER~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~  356 (910)
                      ++.+-.+..+..+..+|..+.+.|..++.+++..-.-..+...||+-.+..++-|.......+.+..+|..-.       
T Consensus       163 sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yr-------  235 (1195)
T KOG4643|consen  163 SPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYR-------  235 (1195)
T ss_pred             CcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------
Confidence            3344455667788889999999999999999988877778888888888888888877777777766653211       


Q ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          357 EEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAE  418 (910)
Q Consensus       357 ~ELEqgia~~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~Ae  418 (910)
                      .|+         .++.+.-+.+...|...+-+++.+|.-++.|+++-..++++|.--..+.+
T Consensus       236 del---------dalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq  288 (1195)
T KOG4643|consen  236 DEL---------DALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQ  288 (1195)
T ss_pred             hHH---------HHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            111         12222333333445555555555555555555555555555554444433

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.55  E-value=0.013  Score=77.05  Aligned_cols=126  Identities=13%  Similarity=0.212  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh----
Q 002541          287 KYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQG----  362 (910)
Q Consensus       287 ~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqg----  362 (910)
                      ..+..+|......+..|++.....+...-++..+|++++..   +..+++......-......-..+.+...|...    
T Consensus       915 ~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~---~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~  991 (1822)
T KOG4674|consen  915 TDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLE---LEAKIESLHKKITSLEEELSELEKEIENLREELELS  991 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33455677777888889998888998888888888888844   44445554444444443332333333343321    


Q ss_pred             hhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          363 IADD--ASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVK  415 (910)
Q Consensus       363 ia~~--~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k  415 (910)
                      +..+  .-..+..++.+++..+..+..-...+-.-+..++.++......-..|..
T Consensus       992 ~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~ 1046 (1822)
T KOG4674|consen  992 TKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQS 1046 (1822)
T ss_pred             ccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111  1134556666666666655555555555566666665555444444443

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.51  E-value=0.0069  Score=71.74  Aligned_cols=55  Identities=29%  Similarity=0.398  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002541          305 KRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEM  359 (910)
Q Consensus       305 eqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~EL  359 (910)
                      .+++.+...+..++......+..+..|...+++++.+.....+..+..+.+.+++
T Consensus       143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel  197 (546)
T PF07888_consen  143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKEL  197 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555556666666666666666666666666555554444444444444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.42  E-value=0.023  Score=74.02  Aligned_cols=42  Identities=14%  Similarity=0.189  Sum_probs=19.5

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          753 VAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKA  794 (910)
Q Consensus       753 a~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~aleeAlera  794 (910)
                      -....++...+..-.....++.....++...+..++......
T Consensus       819 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~  860 (1201)
T PF12128_consen  819 PELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKAL  860 (1201)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444555555555554444444444333

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.40  E-value=0.0097  Score=73.25  Aligned_cols=71  Identities=21%  Similarity=0.264  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          381 RHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAA  451 (910)
Q Consensus       381 q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~aa  451 (910)
                      +|+.--.||.-+..+|.+|...+..+.+.-+.-..+...+...+..+...+.+|...|..+++..+.+.+.
T Consensus       224 EYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~  294 (1200)
T KOG0964|consen  224 EYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKAR  294 (1200)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            58888899999999999999999988888777777777778888888888888888888888877776654

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.31  E-value=0.023  Score=68.68  Aligned_cols=34  Identities=21%  Similarity=0.312  Sum_probs=16.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          758 QIEVAKASELRSLERLEEVNKEIATRKEALKVAM  791 (910)
Q Consensus       758 QvEeAkese~~~l~Kle~~~~Eie~~k~aleeAl  791 (910)
                      +++..|+...+--+|.+.+..+|.+..-.+..++
T Consensus       484 e~emlKaen~rqakkiefmkEeiQethldyR~el  517 (1265)
T KOG0976|consen  484 EYEMLKAENERQAKKIEFMKEEIQETHLDYRSEL  517 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444445555555555555544444433

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.23  E-value=0.031  Score=67.37  Aligned_cols=109  Identities=17%  Similarity=0.227  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhh
Q 002541          287 KYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADD  366 (910)
Q Consensus       287 ~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~  366 (910)
                      ..++..|..+.+.+.+|+  .-.|......+...|..+...+..+...|..+......=....+..+.++++|...+...
T Consensus        82 ~~ie~~l~~ae~~~~~~~--f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~  159 (569)
T PRK04778         82 PDIEEQLFEAEELNDKFR--FRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLAN  159 (569)
T ss_pred             hhHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345555666666666554  345566667777778888888888888888888877777777778888888886654432


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          367 ASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTE  409 (910)
Q Consensus       367 ~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~ee  409 (910)
                                  +..|..++..|+.--.+|+..-.+|..+...
T Consensus       160 ------------~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~  190 (569)
T PRK04778        160 ------------RFSFGPALDELEKQLENLEEEFSQFVELTES  190 (569)
T ss_pred             ------------CccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                        3357777777766666666665555555443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.23  E-value=0.066  Score=70.81  Aligned_cols=64  Identities=19%  Similarity=0.146  Sum_probs=48.7

Q ss_pred             chHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002541          281 QTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELA  352 (910)
Q Consensus       281 ~~~ER~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~a  352 (910)
                      ++.+|+..++.        +..|+.++..+......+...|.+....+.+|..+|+.+..+...|.+-.++.
T Consensus       277 ~~eERR~liEE--------Aag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~  340 (1486)
T PRK04863        277 HANERRVHLEE--------ALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLV  340 (1486)
T ss_pred             CHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678877765        35677888888888888888888888888888888888888877775544433

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.20  E-value=0.041  Score=67.44  Aligned_cols=72  Identities=26%  Similarity=0.331  Sum_probs=58.2

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 002541          290 EQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQ  361 (910)
Q Consensus       290 e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEq  361 (910)
                      ..+...+|++|.+.+.....|-.++.+...||..+-..|+-+++.=|.+.+-.+....+.|..+.|+.+|+-
T Consensus       275 m~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~delet  346 (1243)
T KOG0971|consen  275 MEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELET  346 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344667788888888888888888888888888888888888888788877777788888888888888774

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=98.20  E-value=0.048  Score=68.16  Aligned_cols=302  Identities=17%  Similarity=0.158  Sum_probs=162.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 002541          386 VSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEA----ISASKEVEKTVEELTIELIATKESLESAHAAHLEAE---EQ  458 (910)
Q Consensus       386 laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA----~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~eAE---e~  458 (910)
                      -.+|.+.+.|.+.+..-+..+...-+.|.++|+.+    .......++-+.+|..=|..+++.|..-.+.-...+   +.
T Consensus      1421 ~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~ 1500 (1758)
T KOG0994|consen 1421 DTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEE 1500 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            35555666665555544444444444444444433    333444445555555555555555443221111111   10


Q ss_pred             HHHHhh--hhhh------hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHh--hhhh
Q 002541          459 RIGAAM--ARDQ------DSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKA---ELSAYMES--KLKE  525 (910)
Q Consensus       459 r~~v~l--a~eq------d~~~~e~eL~qaEEEie~Lr~el~~a~dLeakLeea~~~Le~Lk~---ELa~~lE~--kL~e  525 (910)
                      -+.+.|  .-+|      +..+--..|...+.-+.+.+-+|.++..|++....+.+..+.++.   ++..+|+.  +...
T Consensus      1501 vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~ 1580 (1758)
T KOG0994|consen 1501 VLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQG 1580 (1758)
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            011000  0011      011122345556666777777888888888888888877777765   33333331  1000


Q ss_pred             hhccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002541          526 ESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMAS  605 (910)
Q Consensus       526 ~~~ei~~lq~~L~E~ek~~~~~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~  605 (910)
                      .+ . ..+++     ........+..|..++.+...++..+..+...+..|+..++.|+.+..+--.+-..+...-..+.
T Consensus      1581 ~a-~-~ai~~-----a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~ 1653 (1758)
T KOG0994|consen 1581 EA-Q-DAIQG-----ADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAK 1653 (1758)
T ss_pred             HH-H-HHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            00 0 11111     12223455666888888888888888889999999998888888877665555555555445555


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 002541          606 VAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRL  685 (910)
Q Consensus       606 ~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL  685 (910)
                      ....+.+..++.+....+.+..-.++..+.........+++..+++.+-..+..+-..|.++.-+++.....|......|
T Consensus      1654 ~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL 1733 (1758)
T KOG0994|consen 1654 EQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAEL 1733 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence            55555555555555555444443333333333444455677777777766666666677777766666665555555555


Q ss_pred             HHHHHHHHH
Q 002541          686 TAARKEIEA  694 (910)
Q Consensus       686 ~aA~KElEA  694 (910)
                      .-+.++++.
T Consensus      1734 ~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1734 AGLEKRVES 1742 (1758)
T ss_pred             hhHHHHHHH
Confidence            444444433

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.18  E-value=0.054  Score=68.06  Aligned_cols=444  Identities=17%  Similarity=0.213  Sum_probs=265.8

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhh
Q 002541          288 YVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDA  367 (910)
Q Consensus       288 ~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~  367 (910)
                      ..-++|+.+.+.+..+-+.+..+-.-......+|...++.+.++..+|+.++.        .+....+...|...++   
T Consensus       204 mkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~--------~e~~~~~l~~Lk~k~~---  272 (1074)
T KOG0250|consen  204 MKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQ--------LEDLKENLEQLKAKMA---  272 (1074)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH---
Confidence            45677899999999999999888888888888888888888888877665543        3344456666654444   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          368 SVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLES  447 (910)
Q Consensus       368 ~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~  447 (910)
                         |..        -.....+|....+++.+.+..++.+-+.-.....+..++.......+.++..+..+..+..+.++.
T Consensus       273 ---W~~--------V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~  341 (1074)
T KOG0250|consen  273 ---WAW--------VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEE  341 (1074)
T ss_pred             ---HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHH
Confidence               443        445556666777777777777777777777777777777777788888888888887777777777


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002541          448 AHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEES  527 (910)
Q Consensus       448 a~aa~~eAEe~r~~v~la~eqd~~~~e~eL~qaEEEie~Lr~el~~a~dLeakLeea~~~Le~Lk~ELa~~lE~kL~e~~  527 (910)
                      ++......-..-..+    +......+..+++.+.++..+++                 .+..+++++...+...+.+..
T Consensus       342 ~r~~~~~~~re~~~~----~~~~~~~~n~i~~~k~~~d~l~k-----------------~I~~~~~~~~~~~~~~~~e~e  400 (1074)
T KOG0250|consen  342 ARKDLDDLRREVNDL----KEEIREIENSIRKLKKEVDRLEK-----------------QIADLEKQTNNELGSELEERE  400 (1074)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHhhhhhhHHHHH
Confidence            665433211110000    00111112233333333333333                 333333333222222222111


Q ss_pred             ccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--
Q 002541          528 NEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMAS--  605 (910)
Q Consensus       528 ~ei~~lq~~L~E~ek~~~~~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~--  605 (910)
                      .++..|        +..+..++..+.++..|+++++..+....++...+...+..|+..+..-...|..++.--....  
T Consensus       401 ~k~~~L--------~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~  472 (1074)
T KOG0250|consen  401 NKLEQL--------KKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSA  472 (1074)
T ss_pred             HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhh
Confidence            111000        1112333445566777777777777777777777777777777777777777666644333222  


Q ss_pred             --HHHHhHHHHHHHHHHH-----------------------HHHH-----------------------------------
Q 002541          606 --VAVASLEAELDRTRSE-----------------------IALV-----------------------------------  625 (910)
Q Consensus       606 --~eI~sL~eELer~ksE-----------------------Le~~-----------------------------------  625 (910)
                        ..+..|..++++....                       ++.+                                   
T Consensus       473 FG~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh~D~~~Lr~i~~~~~~~~~~ptI  552 (1074)
T KOG0250|consen  473 FGPNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIERCLGNLLNAFIVTSHKDARILRAIMRRLKIPGNRPTI  552 (1074)
T ss_pred             cchhhHHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHHHHHHhhhhheeCCHhhHHHHHHHHHHcCCCCCCCcE
Confidence              2366677777776665                       0000                                   


Q ss_pred             --------------------------------------------------HHHHHHHHHhhh-c----------------
Q 002541          626 --------------------------------------------------QMKEKEAREKTV-E----------------  638 (910)
Q Consensus       626 --------------------------------------------------kakeeeare~~~-e----------------  638 (910)
                                                                        +. -.++++.|. +                
T Consensus       553 vvs~~~~~~y~~~~~p~~~~pTil~~le~ddp~V~N~LID~s~iE~~lLiEd-k~Ea~~~m~s~~~p~n~~~aytldg~~  631 (1074)
T KOG0250|consen  553 VVSSFTPFDYSVGRNPGYEFPTILDALEFDDPEVLNVLIDKSGIEQVLLIED-KKEAREFMQSDKPPANVTKAYTLDGRQ  631 (1074)
T ss_pred             EEecCCccccccccCCCCCCCceeeeeecCChHHHHHhhhhccceeEEEecc-hHHHHHHHhcCCCCccceeeeccCccc
Confidence                                                              00 011222211 0                


Q ss_pred             ----ch----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 002541          639 ----LP----------------KQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARAS  698 (910)
Q Consensus       639 ----L~----------------~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAs  698 (910)
                          .+                .--..+..++++++.++..++.++..+......++..|+..+.++..+...+...+--
T Consensus       632 ~~~~g~~~~~ySt~~~~~r~~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~  711 (1074)
T KOG0250|consen  632 IFAGGPNYRVYSTRGTRARRPGVDEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRR  711 (1074)
T ss_pred             cccCCCCcceeccCCCCCCCccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                00                0013455677888888888888888888888888888888888888888888776666


Q ss_pred             HHHHHHHHHHhhhhhhhcccCCCCCCCccccchHhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002541          699 EKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNK  778 (910)
Q Consensus       699 Ea~Ala~ikaL~e~~~~~~~~~~~~~~~Itls~eEy~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~  778 (910)
                      -.....+|..|...   +..        -.+.+..+..|.......    .+.+....+.++.++.....+..+..++..
T Consensus       712 ~~~~~~em~el~n~---~e~--------~~~~~~~~~~l~~ei~~~----~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~  776 (1074)
T KOG0250|consen  712 IRKKRAEMTELKNT---AEE--------KQVDISKLEDLAREIKKK----EKEIEEKEAPLEKLKEELEHIELEAQELEE  776 (1074)
T ss_pred             HHHHHHHHHHHhhh---hhh--------hhcchhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666532   000        011123344444433322    234556667777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 002541          779 EIATRKEALKVAMEKAEKAK  798 (910)
Q Consensus       779 Eie~~k~aleeAleraE~Ae  798 (910)
                      ..+..+.++.....+.+.+.
T Consensus       777 ~~~~~~~~l~~e~~~l~~l~  796 (1074)
T KOG0250|consen  777 YYAAGREKLQGEISKLDALK  796 (1074)
T ss_pred             HHHHHHHHHHHHHHHhhHHH
Confidence            77778888888888887776

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.18  E-value=0.0027  Score=68.21  Aligned_cols=129  Identities=15%  Similarity=0.238  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 002541          566 IEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQV  645 (910)
Q Consensus       566 Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqq  645 (910)
                      |..+...+......++.....|..+...|+.+..+...+...+..|..+|..+...|..+.....++......+...+..
T Consensus       101 l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~  180 (237)
T PF00261_consen  101 LKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRD  180 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence            33333333344444444445555555555666666666666666666666666666666666655555555555556666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 002541          646 AAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEA  694 (910)
Q Consensus       646 ls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEA  694 (910)
                      +...+.++...+..+...+..+...+..+...|.....++..+..+++.
T Consensus       181 L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~  229 (237)
T PF00261_consen  181 LEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ  229 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666555555555555555555544

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.17  E-value=0.0092  Score=74.58  Aligned_cols=39  Identities=21%  Similarity=0.418  Sum_probs=23.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002541          471 HLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLK  512 (910)
Q Consensus       471 ~~~e~eL~qaEEEie~Lr~el~~a~dLeakLeea~~~Le~Lk  512 (910)
                      ...+++|...++++....+.+   ..|+.+++.....+..++
T Consensus       277 ~~~~~ql~~~~~~i~~~qek~---~~l~~ki~~~~~k~~~~r  315 (1074)
T KOG0250|consen  277 NEVERQLNNQEEEIKKKQEKV---DTLQEKIEEKQGKIEEAR  315 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence            344666666666666655543   366666666666666555

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=98.12  E-value=0.049  Score=65.11  Aligned_cols=73  Identities=18%  Similarity=0.232  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHH
Q 002541          549 QAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELER-EKSALAAIRQREGMASVAVASLEAELDRTRSE  621 (910)
Q Consensus       549 ~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek-~K~ELeelKeke~~a~~eI~sL~eELer~ksE  621 (910)
                      ...+.....++-.....+.........+++.+++++..|.+ -+..-..++++..+....|..|...|++....
T Consensus       529 ~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~  602 (961)
T KOG4673|consen  529 QAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQ  602 (961)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455666666666677777777888888888888887733 33445678888888888899888888776543

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=98.11  E-value=0.071  Score=66.78  Aligned_cols=23  Identities=13%  Similarity=0.174  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 002541          312 VAKNQVLKELDQTKRLVEELKLN  334 (910)
Q Consensus       312 ~~k~qal~ELe~aKr~ieeL~~k  334 (910)
                      ....++-..++..+++|..++..
T Consensus      1225 ~~i~~l~~~~~~lr~~l~~~~e~ 1247 (1758)
T KOG0994|consen 1225 EDIAQLASATESLRRQLQALTED 1247 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            33444444444444444444444

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.09  E-value=0.082  Score=66.70  Aligned_cols=182  Identities=18%  Similarity=0.236  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 002541          300 MPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAK  379 (910)
Q Consensus       300 L~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~~a~k~eLE~ar  379 (910)
                      ...+++.+..-+..-.+..+.|.++..-+..|...+++...+...+....+-+.....+++..+...     ...++..+
T Consensus       386 ~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L-----~~~~~~~~  460 (1293)
T KOG0996|consen  386 FESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQL-----EELLEKEE  460 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHH-----HHHHHHHH
Confidence            3345566666666667777777777777777777777777777777767777777777776555442     23333333


Q ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          380 ARHVAAVSEL----KSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEA  455 (910)
Q Consensus       380 ~q~a~~laEL----~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~eA  455 (910)
                      ......+..|    .....++.+++.++.......+.+..++.-++..++.+..+.+.+...+..+++.|........  
T Consensus       461 ~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~--  538 (1293)
T KOG0996|consen  461 RELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLK--  538 (1293)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            3333333333    3567788888888888888888888888888888888888888888888888888887654332  


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 002541          456 EEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQ  490 (910)
Q Consensus       456 Ee~r~~v~la~eqd~~~~e~eL~qaEEEie~Lr~e  490 (910)
                       +.+..+. ....+-..|..++.++..++..++..
T Consensus       539 -e~~~~l~-~~k~~l~~~k~e~~~~~k~l~~~~~e  571 (1293)
T KOG0996|consen  539 -EKKTELD-DLKEELPSLKQELKEKEKELPKLRKE  571 (1293)
T ss_pred             -HHHHHHH-HHHHhhhhHHHHHHHHHHhHHHHHHH
Confidence             2222211 11222334455555555555554443

>PRK01156 chromosome segregation protein; Provisional

Probab=98.09  E-value=0.085  Score=66.75  Aligned_cols=46  Identities=17%  Similarity=0.198  Sum_probs=19.0

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          293 LERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERA  338 (910)
Q Consensus       293 L~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a  338 (910)
                      +..++.+|..++.++...+.....+..++...+..++.+...++.+
T Consensus       192 l~~~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l  237 (895)
T PRK01156        192 LKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNL  237 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444444343333

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.07  E-value=0.0064  Score=65.39  Aligned_cols=95  Identities=16%  Similarity=0.236  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002541          559 LEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVE  638 (910)
Q Consensus       559 Lee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~e  638 (910)
                      |..+...|..+...+..+...+..|..+|..+...|..+......+......+...+..+...|..+..+...+...+..
T Consensus       122 l~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~  201 (237)
T PF00261_consen  122 LKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKK  201 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555555555555556666666666666666666666666666666666666666665555444444333333


Q ss_pred             chHHHHHHHHHHHHH
Q 002541          639 LPKQLQVAAQEADQA  653 (910)
Q Consensus       639 L~~eLqqls~EaEeA  653 (910)
                      |...+..+..++...
T Consensus       202 Le~~id~le~eL~~~  216 (237)
T PF00261_consen  202 LEKEIDRLEDELEKE  216 (237)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444443333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.98  E-value=0.049  Score=60.34  Aligned_cols=29  Identities=14%  Similarity=0.311  Sum_probs=13.1

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002541          293 LERSHEEMPEYRKRSEAAEVAKNQVLKEL  321 (910)
Q Consensus       293 L~~~qeeL~k~Keqle~aE~~k~qal~EL  321 (910)
                      |..+-.-|..|=++....|.....+..+|
T Consensus         6 L~~LNdRla~YIekVr~LE~~N~~Le~~i   34 (312)
T PF00038_consen    6 LQSLNDRLASYIEKVRFLEQENKRLESEI   34 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            44444444555554444444444443333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.87  E-value=0.18  Score=63.02  Aligned_cols=67  Identities=25%  Similarity=0.333  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          382 HVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAIS--------ASKEVEKTVEELTIELIATKESLESAHAAH  452 (910)
Q Consensus       382 ~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~--------aak~~eekveeLt~EL~~lKEsLe~a~aa~  452 (910)
                      |-..+.++...++++..+++++.....    +.+.+++...        +...-+.++.+|..+|..++..++......
T Consensus       736 ~~~~~~~~~~~~e~v~e~~~~Ike~~~----~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~  810 (1174)
T KOG0933|consen  736 FHKLLDDLKELLEEVEESEQQIKEKER----ALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKEL  810 (1174)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555666666666665543332    2222222221        122456778888888877776666554433

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=97.80  E-value=0.19  Score=61.96  Aligned_cols=142  Identities=22%  Similarity=0.296  Sum_probs=87.0

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh--hhhH
Q 002541          292 ELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIAD--DASV  369 (910)
Q Consensus       292 EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~--~~~~  369 (910)
                      .|..++-||...+..+       ..+..|.++......+|....+.+..++.+.+.+.--.|+|-.-|=+..+.  ..+.
T Consensus        35 ~i~~l~~elk~~~~~~-------~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENi  107 (717)
T PF09730_consen   35 RILELENELKQLRQEL-------SNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENI  107 (717)
T ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            3444444444444444       444445555555555555556666666555555555455554333333222  2335


Q ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          370 AARAQLEVAKA---RHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIA  440 (910)
Q Consensus       370 a~k~eLE~ar~---q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~  440 (910)
                      .+|.++-+-|.   .|..+=-|+....+|++-|+.+++.+..-|+.+.++.+||--+++.=-+....|..||..
T Consensus       108 slQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~  181 (717)
T PF09730_consen  108 SLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQ  181 (717)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56776666664   355556677777777777777888888888888888888888877777777777777765

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.78  E-value=0.18  Score=60.19  Aligned_cols=38  Identities=13%  Similarity=0.328  Sum_probs=30.9

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          291 QELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLV  328 (910)
Q Consensus       291 ~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~i  328 (910)
                      .||..+---|+.|=++....|+....+..+|...+..+
T Consensus        42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~   79 (546)
T KOG0977|consen   42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVV   79 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            35888888999999999999999988887777666554

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.77  E-value=0.39  Score=63.87  Aligned_cols=192  Identities=20%  Similarity=0.276  Sum_probs=86.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh-HHHHHHHHHHHHHH
Q 002541          546 TDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVAS-LEAELDRTRSEIAL  624 (910)
Q Consensus       546 ~~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~s-L~eELer~ksELe~  624 (910)
                      ..++..+..++.+.+.++..+..+..+.......+.+++..+......+..++..+...-..... .+..+...+   ..
T Consensus       988 ~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~---~~ 1064 (1486)
T PRK04863        988 EKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARR---DE 1064 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhH---HH
Confidence            33344444444444444444444444444444444444444444444444444433332111111 111111111   22


Q ss_pred             HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------HHHHHHHHHHHHHHH---
Q 002541          625 VQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAG---------ASTIESRLTAARKEI---  692 (910)
Q Consensus       625 ~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKae---------I~taE~rL~aA~KEl---  692 (910)
                      +.......+.....|...+.....|++.+...+.....++..++.++..+|..         -..++.+|..-.--|   
T Consensus      1065 l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~~v~~~~~~~~~~~~l~~~~~~~~~~ 1144 (1486)
T PRK04863       1065 LHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVERRLHRRELAYLSA 1144 (1486)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHhhhhccCc
Confidence            22222233444445555666666666666666666666666666666666542         113355554333222   


Q ss_pred             -------HHHHHHHHHHHHHHHHhhhhhhhcccCCC-CCCCccccchHhhHHHHHHHH
Q 002541          693 -------EAARASEKLALAAIKALQESESAQRTDDV-DSPTGVTLSLEEYYELSKRAH  742 (910)
Q Consensus       693 -------EAAKAsEa~Ala~ikaL~e~~~~~~~~~~-~~~~~Itls~eEy~~L~~ka~  742 (910)
                             ..+--+-+.|++.-..|.+.-..+  .++ .+...|+|-+.=|.-|..|+.
T Consensus      1145 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~~~~r~r~r 1200 (1486)
T PRK04863       1145 DELRSMSDKALGALRLAVADNEHLRDVLRLS--EDPKRPERKVQFYIAVYQHLRERIR 1200 (1486)
T ss_pred             hhhHHHHHHHHHHHHHhccCcHHHHHHHhhc--cCCCchhHHHhHHHHHHHHHHHHHh
Confidence                   111112222222222222211111  122 345678999999999998875

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.72  E-value=0.11  Score=61.81  Aligned_cols=125  Identities=25%  Similarity=0.294  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 002541          299 EMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVA  378 (910)
Q Consensus       299 eL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~~a~k~eLE~a  378 (910)
                      +|..++.=+..+..+++++..++...+-.+++|+.+++++......+.++......++-++            ++++..+
T Consensus        93 El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~l------------eAe~~~~  160 (546)
T KOG0977|consen   93 ELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSEL------------EAEINTL  160 (546)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhh------------hhHHHHH
Confidence            3455566666666677777777777777777777777777766655554444333333333            4455556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          379 KARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATK  442 (910)
Q Consensus       379 r~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lK  442 (910)
                      +.++..+.-++.-++.|..+|..+|..+...++...       .-...+.-++..|..+|.-++
T Consensus       161 krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et-------llr~d~~n~~q~Lleel~f~~  217 (546)
T KOG0977|consen  161 KRRIKALEDELKRLKAENSRLREELARARKQLDDET-------LLRVDLQNRVQTLLEELAFLK  217 (546)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHH
Confidence            666777777777777777777777766665555433       344455666666666665554

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.70  E-value=0.29  Score=60.49  Aligned_cols=147  Identities=25%  Similarity=0.357  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 002541          371 ARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESA--  448 (910)
Q Consensus       371 ~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a--  448 (910)
                      ++.+|--+|.....+...-+.-++|+..+..-+.++.-.|.-|..+++-++.....+.+++++|..+|.-||.+.+.-  
T Consensus       281 Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~  360 (1243)
T KOG0971|consen  281 LQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGS  360 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            344444444444444444444455666666666666667777888888888888888888888887777777765431  


Q ss_pred             --------HHHHHHHHHHHHHHhhhhh--------hhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002541          449 --------HAAHLEAEEQRIGAAMARD--------QDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLK  512 (910)
Q Consensus       449 --------~aa~~eAEe~r~~v~la~e--------qd~~~~e~eL~qaEEEie~Lr~el~~a~dLeakLeea~~~Le~Lk  512 (910)
                              +-..++-...|+.=++-+=        +|-....++++....|+..|++.   +.-|..+++.+...+.+|+
T Consensus       361 ~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~---kE~Lsr~~d~aEs~iadlk  437 (1243)
T KOG0971|consen  361 DGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQ---KERLSRELDQAESTIADLK  437 (1243)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence                    1111222222222112111        12223334444444455444443   2467777788888888887


Q ss_pred             HHHHHHHH
Q 002541          513 AELSAYME  520 (910)
Q Consensus       513 ~ELa~~lE  520 (910)
                      ..+-+.|-
T Consensus       438 EQVDAAlG  445 (1243)
T KOG0971|consen  438 EQVDAALG  445 (1243)
T ss_pred             HHHHHhhc
Confidence            76555443

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.67  E-value=0.27  Score=59.32  Aligned_cols=82  Identities=16%  Similarity=0.171  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002541          550 AAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKE  629 (910)
Q Consensus       550 esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kake  629 (910)
                      ..|-...+++.+++..|......-......+..|+.+|+..+---.++-...+..+.+...+-.+...+..++...++..
T Consensus       443 ~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi  522 (786)
T PF05483_consen  443 GLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDI  522 (786)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            34555666777777777777766666667778888888877666666666666666666666666666666655554444


Q ss_pred             HH
Q 002541          630 KE  631 (910)
Q Consensus       630 ee  631 (910)
                      ..
T Consensus       523 ~~  524 (786)
T PF05483_consen  523 NN  524 (786)
T ss_pred             HH
Confidence            33

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PRK01156 chromosome segregation protein; Provisional

Probab=97.66  E-value=0.4  Score=60.84  Aligned_cols=28  Identities=14%  Similarity=0.098  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          318 LKELDQTKRLVEELKLNLERAQTEEHQA  345 (910)
Q Consensus       318 l~ELe~aKr~ieeL~~kLE~a~~e~~~A  345 (910)
                      ..+|...++.+.++...+..+......+
T Consensus       196 e~eL~~~~~~i~el~~~~~~l~~~i~~~  223 (895)
T PRK01156        196 NLELENIKKQIADDEKSHSITLKEIERL  223 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444443333333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.59  E-value=0.04  Score=67.85  Aligned_cols=226  Identities=21%  Similarity=0.291  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002541          311 EVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELK  390 (910)
Q Consensus       311 E~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~~a~k~eLE~ar~q~a~~laEL~  390 (910)
                      |.+..++..||...+..=+||+.+|.-+......++.++...                   |.+.|..+.++..+.....
T Consensus       424 E~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~ql-------------------r~ene~Lq~Kl~~L~~aRq  484 (697)
T PF09726_consen  424 EADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQL-------------------RQENEQLQNKLQNLVQARQ  484 (697)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHH
Confidence            333344445555555555666666544433333333222222                   2233333345666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 002541          391 SVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDS  470 (910)
Q Consensus       391 svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~eAEe~r~~v~la~eqd~  470 (910)
                      .-|+.|..|...|.+-...|....++..+-.+..+..+.....--..-...+.  +..+ .   ...++.+  |  |.+.
T Consensus       485 ~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~--e~~e-~---~r~r~~~--l--E~E~  554 (697)
T PF09726_consen  485 QDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQ--ECAE-S---CRQRRRQ--L--ESEL  554 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccc--hhHH-H---HHHHHHH--H--HHHH
Confidence            66777777777777777777777776666665555433322111000000000  0100 0   1111111  2  3355


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHH--HHHHHHHhhhhhhhccccCCCCCCchhhhhhhhH
Q 002541          471 HLWEKELKQAEEELQKLTQQILSAKDL-RSKLDTASALLLDLKA--ELSAYMESKLKEESNEEGHSNGELEEPERKTHTD  547 (910)
Q Consensus       471 ~~~e~eL~qaEEEie~Lr~el~~a~dL-eakLeea~~~Le~Lk~--ELa~~lE~kL~e~~~ei~~lq~~L~E~ek~~~~~  547 (910)
                      ..+.++|+..++.+..+..++..-+.+ +..-.+.+.++..|..  |-...||+.|..+               ...--+
T Consensus       555 ~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaE---------------triKld  619 (697)
T PF09726_consen  555 KKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAE---------------TRIKLD  619 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHH---------------HHHHHH
Confidence            566778888888888887776433333 1111223344444443  4455556555522               112245


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          548 IQAAVASAKKELEEVKLNIEKATAEVNCLKVAA  580 (910)
Q Consensus       548 l~esL~sakkELee~K~~Leka~eEl~sL~~~v  580 (910)
                      |-.+|..++.+|+.+...|..-..||..|+..+
T Consensus       620 LfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki  652 (697)
T PF09726_consen  620 LFSALGDAKRQLEIAQGQLRKKDKEIEELKAKI  652 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555677777777766666666666665555443

; GO: 0016021 integral to membrane

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.46  E-value=0.73  Score=58.88  Aligned_cols=46  Identities=15%  Similarity=0.128  Sum_probs=25.5

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          293 LERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERA  338 (910)
Q Consensus       293 L~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a  338 (910)
                      ...+|.+++.+.+++...+..+..+...+...++.++.+..+...+
T Consensus       489 ~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~  534 (1317)
T KOG0612|consen  489 KALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA  534 (1317)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666666666666555555555555555554444443

>PRK11637 AmiB activator; Provisional

Probab=97.41  E-value=0.21  Score=58.19  Aligned_cols=10  Identities=20%  Similarity=0.498  Sum_probs=3.6

Q ss_pred             HHHHHHHHHH
Q 002541          477 LKQAEEELQK  486 (910)
Q Consensus       477 L~qaEEEie~  486 (910)
                      |++.+.+++.
T Consensus        49 l~~l~~qi~~   58 (428)
T PRK11637         49 LKSIQQDIAA   58 (428)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.34  E-value=0.032  Score=60.28  Aligned_cols=69  Identities=23%  Similarity=0.282  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          640 PKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKA  708 (910)
Q Consensus       640 ~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ika  708 (910)
                      ..++..+..|...|+.....++.++..+..+.+.+...+.....++......+.+++++-..+++.|.-
T Consensus        88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e  156 (239)
T COG1579          88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE  156 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457788888999999999999999999999999999999999999999999998888777777776654

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.33  E-value=0.21  Score=59.52  Aligned_cols=24  Identities=4%  Similarity=0.299  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          387 SELKSVKDEVESLRKDYASLVTEK  410 (910)
Q Consensus       387 aEL~svKeELekLrqEl~~l~eeK  410 (910)
                      ..+..++.++..++.++..+....
T Consensus       174 ~~~~e~~~~i~~l~~~i~~l~~~i  197 (562)
T PHA02562        174 DKIRELNQQIQTLDMKIDHIQQQI  197 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333455555555555555444443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.30  E-value=0.76  Score=55.70  Aligned_cols=144  Identities=18%  Similarity=0.174  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHhhhcchH
Q 002541          566 IEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMK----EKEAREKTVELPK  641 (910)
Q Consensus       566 Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kak----eeeare~~~eL~~  641 (910)
                      |..+...+..+...++.|-+-|++.......+..........+..+......+..+++.+...    ..+ -.....+..
T Consensus       277 l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e-~~~~~~lek  355 (569)
T PRK04778        277 LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESE-LESVRQLEK  355 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchh-HHHHHHHHH
Confidence            555666666666666666677777777766666666666666667777777777766666543    111 111223444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002541          642 QLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQ  710 (910)
Q Consensus       642 eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~  710 (910)
                      +|..+..........+.........+..+.+.+...+..++.........+...+..|..|...|..+.
T Consensus       356 eL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~  424 (569)
T PRK04778        356 QLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYR  424 (569)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555444545455555566666666666666666666666666666666666666665554

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.27  E-value=0.0032  Score=77.71  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002541          481 EEELQKLTQQILSAKDLRSKLDTASALLLDLKAEL  515 (910)
Q Consensus       481 EEEie~Lr~el~~a~dLeakLeea~~~Le~Lk~EL  515 (910)
                      +++...|...+.....++.+|..+......|..++
T Consensus       287 eEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el  321 (722)
T PF05557_consen  287 EEEKRSLQRKLERLEELEEELAELQLENEKLEDEL  321 (722)
T ss_dssp             -----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444555555555444444444443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.27  E-value=1.1  Score=56.78  Aligned_cols=178  Identities=22%  Similarity=0.302  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Q 002541          574 NCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQA  653 (910)
Q Consensus       574 ~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeA  653 (910)
                      ...+..++.++..+++...+++-++.++..+...+..+ ++++. +.                   .........|+.+.
T Consensus       803 ~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~-k~-------------------k~~~~~~~~e~~e~  861 (1141)
T KOG0018|consen  803 KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK-KN-------------------KSKFEKKEDEINEV  861 (1141)
T ss_pred             ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH-HH-------------------HHHHHHHHHHHHHH
Confidence            55666777777777777777777777777777777766 55544 11                   12334445566666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhcccCCCCCCCccccchH
Q 002541          654 KSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKA-LQESESAQRTDDVDSPTGVTLSLE  732 (910)
Q Consensus       654 Kkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ika-L~e~~~~~~~~~~~~~~~Itls~e  732 (910)
                      +..+..+-.++.++..++-.....|...+.....++.         .-.|..|.. |..- +-    + +-...|   --
T Consensus       862 ~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~---------~ckl~~I~vPl~~g-s~----~-d~~~~i---ei  923 (1141)
T KOG0018|consen  862 KKILRRLVKELTKLDKEITSIESKIERKESERHNLLS---------KCKLEDIEVPLSSG-SM----D-DIVIGI---EI  923 (1141)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH---------HhhhccccccccCC-Cc----c-ccceec---cc
Confidence            6666666666666666666666665555554444432         224455554 2211 10    0 101112   22


Q ss_pred             hhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541          733 EYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAK  798 (910)
Q Consensus       733 Ey~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~aleeAleraE~Ae  798 (910)
                      +|..|.+...     ++.++......+... +=..+++.+++.+.  ...+..+.+.|-..+-.|.
T Consensus       924 dy~~L~~~y~-----L~~kl~e~~~~l~~~-~Pn~kA~~~~d~v~--~~~~~~EfE~ark~ak~ak  981 (1141)
T KOG0018|consen  924 DYSGLPREYK-----LQQKLEEKQSVLNRI-APNLKALERLDEVR--FQEINEEFEAARKEAKKAK  981 (1141)
T ss_pred             ccccccHHHH-----HHHHHHHHHHHHHHh-CcchHHHhhhhhHH--HHHhhHHHHHHHHHHHHHH
Confidence            4555555444     444444444444444 33445566666665  4455555665555555555

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.24  E-value=0.39  Score=57.34  Aligned_cols=35  Identities=14%  Similarity=0.202  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541          568 KATAEVNCLKVAATSLQSELEREKSALAAIRQREG  602 (910)
Q Consensus       568 ka~eEl~sL~~~vesLrsELek~K~ELeelKeke~  602 (910)
                      ....+...+...+..++..+...+..+..+..+..
T Consensus       327 ~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~  361 (562)
T PHA02562        327 EIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAK  361 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444333333

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.24  E-value=0.87  Score=55.06  Aligned_cols=71  Identities=18%  Similarity=0.212  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHH
Q 002541          552 VASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEI  622 (910)
Q Consensus       552 L~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksEL  622 (910)
                      +..+..|++.++.-|..-.+=...++..+..+..++...+..+..++-...........+..-++.++..+
T Consensus       497 i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dl  567 (961)
T KOG4673|consen  497 ITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDL  567 (961)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence            44455555555555544444444555566677777777777777766666666666555555555555543

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.19  E-value=1.3  Score=55.88  Aligned_cols=245  Identities=18%  Similarity=0.222  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHH
Q 002541          549 QAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMK  628 (910)
Q Consensus       549 ~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kak  628 (910)
                      ...+..+...+++....+.+...+...|....+.|..++...+..|..+........+++..|...+.....+...++++
T Consensus       793 ~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~e  872 (1174)
T KOG0933|consen  793 EKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAE  872 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Confidence            33344444444444455555555555555555666666666666666666555556666666666666555555555555


Q ss_pred             HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          629 EKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKA  708 (910)
Q Consensus       629 eeeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ika  708 (910)
                      .......+.+...++..+..+.+....+...++-++.++.-+......+-+.+..++..+.++++=        +..-+.
T Consensus       873 l~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~w--------i~~ek~  944 (1174)
T KOG0933|consen  873 LKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEW--------IGDEKR  944 (1174)
T ss_pred             HHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccc--------hhHHHH
Confidence            555555555555455444444444444444444444444444444444444444444444433322        111111


Q ss_pred             hhhhhhhcccCCCCCCCccccchHhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          709 LQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALK  788 (910)
Q Consensus       709 L~e~~~~~~~~~~~~~~~Itls~eEy~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~ale  788 (910)
                      +-......  -| =.+.+..--.++-..|..+....+...+++   +|.-++.+++-......|.+.+.+.-..++.-..
T Consensus       945 ~fgk~gt~--yD-f~~~~p~~are~l~~Lq~k~~~l~k~vn~~---~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~ 1018 (1174)
T KOG0933|consen  945 LFGKKGTD--YD-FESYDPHEAREELKKLQEKKEKLEKTVNPK---NMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIE 1018 (1174)
T ss_pred             hhcCCCCc--cc-cccCCHhHHHHHHHHhhHHHHHHHhhcCHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            11110000  00 011222223444455555555555555554   4555666666677766666666654444444333


Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 002541          789 VAMEKAEKAKEGKLGIEQELRKWRAEHE  816 (910)
Q Consensus       789 eAleraE~Ae~aK~avE~ELRkwR~e~e  816 (910)
                      .-.+.-         .+.=.+.|+.=+.
T Consensus      1019 ~lDe~k---------~~~L~kaw~~VN~ 1037 (1174)
T KOG0933|consen 1019 KLDEKK---------REELNKAWEKVNK 1037 (1174)
T ss_pred             HHHHHH---------HHHHHHHHHHHhh
Confidence            222221         2233567776554

>PRK11637 AmiB activator; Provisional

Probab=97.18  E-value=0.54  Score=54.86  Aligned_cols=9  Identities=33%  Similarity=0.446  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q 002541          556 KKELEEVKL  564 (910)
Q Consensus       556 kkELee~K~  564 (910)
                      +.+|...+.
T Consensus       179 ~~~L~~~k~  187 (428)
T PRK11637        179 REELAAQKA  187 (428)
T ss_pred             HHHHHHHHH
Confidence            333333333

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.16  E-value=0.6  Score=51.74  Aligned_cols=47  Identities=21%  Similarity=0.275  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Q 002541          579 AATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALV  625 (910)
Q Consensus       579 ~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~  625 (910)
                      .+..++.........+..++.........+.+|..++..++.....+
T Consensus       196 k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~L  242 (312)
T PF00038_consen  196 KLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASL  242 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhh
Confidence            34444444444444444444444444444444444444444443333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.01  E-value=1.4  Score=53.38  Aligned_cols=107  Identities=20%  Similarity=0.282  Sum_probs=60.3

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhh
Q 002541          289 VEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDAS  368 (910)
Q Consensus       289 ~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~  368 (910)
                      ++..|..+.+.+.+|+  .-.|......+...|..+...+..+...|..+......-....+..+.+++++...      
T Consensus        80 ie~~L~~ae~~~~~~r--f~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~------  151 (560)
T PF06160_consen   80 IEEQLFEAEEYADKYR--FKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKE------  151 (560)
T ss_pred             HHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            3344444444443332  23344445556666666666666666666666666666666666666666666443      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          369 VAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTE  409 (910)
Q Consensus       369 ~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~ee  409 (910)
                            |-.-+..|..++..|+.--.+|+..=.+|..+...
T Consensus       152 ------ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~  186 (560)
T PF06160_consen  152 ------LLAHSFSYGPAIEELEKQLENIEEEFSEFEELTEN  186 (560)
T ss_pred             ------HHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHC
Confidence                  33334467777777766666666555555555444

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=96.86  E-value=1.9  Score=52.46  Aligned_cols=78  Identities=22%  Similarity=0.305  Sum_probs=45.0

Q ss_pred             HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHH
Q 002541          552 VASAKKELEE-------VKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIAL  624 (910)
Q Consensus       552 L~sakkELee-------~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~  624 (910)
                      +..++.||+.       +..+.....-+-..+.-.+...-.+|...+..+...+.+.......|.+|...-..++.+++.
T Consensus       473 VeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles  552 (786)
T PF05483_consen  473 VEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELES  552 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555542       333344444444555555556666666666666666666666666666666666666666666


Q ss_pred             HHHHH
Q 002541          625 VQMKE  629 (910)
Q Consensus       625 ~kake  629 (910)
                      ++.+.
T Consensus       553 ~~eel  557 (786)
T PF05483_consen  553 VKEEL  557 (786)
T ss_pred             HHHHH
Confidence            55443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.83  E-value=2.5  Score=53.41  Aligned_cols=75  Identities=9%  Similarity=0.134  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 002541          553 ASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQM  627 (910)
Q Consensus       553 ~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~ka  627 (910)
                      ..++..++..+..|.....++..+...+..|+..+...-..++.+.++...++..+..|+.+-..+..+|..++.
T Consensus       484 ~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~  558 (1195)
T KOG4643|consen  484 EELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT  558 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            334444567788899999999999999999999999999999999999999999999999998888888877765

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.83  E-value=2.3  Score=52.99  Aligned_cols=69  Identities=22%  Similarity=0.267  Sum_probs=41.0

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 002541          289 VEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQ  361 (910)
Q Consensus       289 ~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEq  361 (910)
                      +...+..++.-+..|+-++...+.+..++.-+..++.-..+.|...|-.    ......+++.+..-+++++.
T Consensus       349 l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaq----l~a~r~q~eka~~~~ee~e~  417 (980)
T KOG0980|consen  349 LENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQ----LLASRTQLEKAQVLVEEAEN  417 (980)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHH
Confidence            3444556666677777777777777777777777766666644444333    33334444444444666654

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.83  E-value=0.00029  Score=86.70  Aligned_cols=38  Identities=24%  Similarity=0.347  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          376 EVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIA  413 (910)
Q Consensus       376 E~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A  413 (910)
                      ++.=..|..=+.++...+.++..|+.+...+++.+..-
T Consensus       314 E~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~L  351 (713)
T PF05622_consen  314 ENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAML  351 (713)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334566667777777777777777777666665443

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=96.70  E-value=1.5  Score=48.93  Aligned_cols=104  Identities=17%  Similarity=0.193  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002541          551 AVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEK  630 (910)
Q Consensus       551 sL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakee  630 (910)
                      .+..+.++|+..+..+        .....+..|..++...+.....+.++......+++..+.++-.+-.+.+.++.+..
T Consensus       139 ~I~~L~k~le~~~k~~--------e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkead  210 (294)
T COG1340         139 KIKELRKELEDAKKAL--------EENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEAD  210 (294)
T ss_pred             HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444566665554432        22334445556666666666666666666666666666666666655555544443


Q ss_pred             HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Q 002541          631 EAREKTVELPKQLQVAAQEADQAKSLAQAAGE  662 (910)
Q Consensus       631 eare~~~eL~~eLqqls~EaEeAKkeae~ae~  662 (910)
                      +.-..+.++......+..+...+...+.+...
T Consensus       211 e~he~~ve~~~~~~e~~ee~~~~~~elre~~k  242 (294)
T COG1340         211 ELHEEFVELSKKIDELHEEFRNLQNELRELEK  242 (294)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=96.68  E-value=2.7  Score=51.78  Aligned_cols=135  Identities=19%  Similarity=0.189  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002541          551 AVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEK  630 (910)
Q Consensus       551 sL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakee  630 (910)
                      -+..++.+|+..+.....+-+++.....   -|..+..+.+.+...++..+-++...+..+-+.++.+..+.+.+.+--.
T Consensus       292 lVk~~qeeLd~lkqt~t~a~gdseqatk---ylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr  368 (1265)
T KOG0976|consen  292 LVKELQEELDTLKQTRTRADGDSEQATK---YLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVR  368 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHH
Confidence            3444555555555544444444433332   2333344444444445555555555555555555544444333322111


Q ss_pred             HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          631 EAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIE---SRLTAARKEIEAARASEKLALAAIK  707 (910)
Q Consensus       631 eare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE---~rL~aA~KElEAAKAsEa~Ala~ik  707 (910)
                                           ......+..+.+++.+..+.......|+...   .+|....+.-++||---..|++++.
T Consensus       369 ---------------------~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld  427 (1265)
T KOG0976|consen  369 ---------------------SIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLD  427 (1265)
T ss_pred             ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHH
Confidence                                 1111122223333333333333333333332   3445555666777777777777776


Q ss_pred             Hh
Q 002541          708 AL  709 (910)
Q Consensus       708 aL  709 (910)
                      .|
T Consensus       428 ~m  429 (1265)
T KOG0976|consen  428 LM  429 (1265)
T ss_pred             HH
Confidence            54

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.60  E-value=3.5  Score=52.04  Aligned_cols=275  Identities=16%  Similarity=0.239  Sum_probs=147.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHHH---------HHHHHHHHHHHHHHHHHH--------------HHhhHHHHHH
Q 002541          300 MPEYRKRSEAAEVAKNQVL--KELDQTKR---------LVEELKLNLERAQTEEHQ--------------AKQDSELAKL  354 (910)
Q Consensus       300 L~k~Keqle~aE~~k~qal--~ELe~aKr---------~ieeL~~kLE~a~~e~~~--------------A~e~sE~ak~  354 (910)
                      |....++|...|.+|..+.  ++|+..+|         .+.+...+|+++...+..              +...++..+.
T Consensus       193 l~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~  272 (1200)
T KOG0964|consen  193 LKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKC  272 (1200)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHh
Confidence            4444445555554444322  34444443         344566666666555333              4444444555


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          355 RVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEEL  434 (910)
Q Consensus       355 r~~ELEqgia~~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeL  434 (910)
                      .+.+|+..+     ..+..+.+.+..+++..+.....+.=++..|+.+++.-...+..+............+...++...
T Consensus       273 ~i~ele~~l-----~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I  347 (1200)
T KOG0964|consen  273 EIKELENKL-----TNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKI  347 (1200)
T ss_pred             HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            555554433     335667888888999999999988889999999999988888888887776666666666665555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---------hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002541          435 TIELIATKESLESAHAAHLEAEEQRIGAAMARDQ---------DSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTAS  505 (910)
Q Consensus       435 t~EL~~lKEsLe~a~aa~~eAEe~r~~v~la~eq---------d~~~~e~eL~qaEEEie~Lr~el~~a~dLeakLeea~  505 (910)
                      .-....+.+.-......+...+..+..+ ++..-         +...|      ...++.+|...|...+..+..   ..
T Consensus       348 ~Pky~~l~~ee~~~~~rl~~l~~~~~~l-~~Kqgr~sqFssk~eRDkw------ir~ei~~l~~~i~~~ke~e~~---lq  417 (1200)
T KOG0964|consen  348 EPKYNSLVDEEKRLKKRLAKLEQKQRDL-LAKQGRYSQFSSKEERDKW------IRSEIEKLKRGINDTKEQENI---LQ  417 (1200)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhhccccccCcHHHHHHH------HHHHHHHHHHHHhhhhhHHHH---HH
Confidence            5555544444333333332333322221 22111         22334      234455555544433222222   23


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          506 ALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQS  585 (910)
Q Consensus       506 ~~Le~Lk~ELa~~lE~kL~e~~~ei~~lq~~L~E~ek~~~~~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrs  585 (910)
                      ..++.+++++.+.++. +.+....|.               +....+...-.++.+.+..+......-..+|..-..|++
T Consensus       418 ~e~~~~e~~l~~~~e~-i~~l~~si~---------------e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~  481 (1200)
T KOG0964|consen  418 KEIEDLESELKEKLEE-IKELESSIN---------------ETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRS  481 (1200)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHhhHh---------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556666665554442 111100011               111112223333444455555555556666777777777


Q ss_pred             HHHHHHHHHHHHHHHHhhhH
Q 002541          586 ELEREKSALAAIRQREGMAS  605 (910)
Q Consensus       586 ELek~K~ELeelKeke~~a~  605 (910)
                      .++..+..|.+.+..+..+.
T Consensus       482 ~i~~~~~dl~~~~~~L~~~~  501 (1200)
T KOG0964|consen  482 LIANLEEDLSRAEKNLRATM  501 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            77777777777776666543

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.54  E-value=3.3  Score=51.00  Aligned_cols=139  Identities=14%  Similarity=0.193  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHH----------HHHHHHHHHHHH
Q 002541          562 VKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTR----------SEIALVQMKEKE  631 (910)
Q Consensus       562 ~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~k----------sELe~~kakeee  631 (910)
                      .+..+...+.+|..+....+...+++..++..|.++++++..+.-+.+.|...|....          ++|..+..+...
T Consensus       463 vr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~  542 (1118)
T KOG1029|consen  463 VRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKEL  542 (1118)
T ss_pred             heeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHH
Confidence            3344444445555555555555555555555555555555555555555554444332          223333222221


Q ss_pred             HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 002541          632 AREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARK-EIEAARASEKLALAAIKALQ  710 (910)
Q Consensus       632 are~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~K-ElEAAKAsEa~Ala~ikaL~  710 (910)
                      +          .+.++..++++.++.+..-.++.-.......+|.........++..-+ +++.-|.+|..++..+..--
T Consensus       543 i----------rq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~~ke  612 (1118)
T KOG1029|consen  543 I----------RQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIGEKE  612 (1118)
T ss_pred             H----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            2          233333333333334444444444444444444444444444444433 55677788888888776644

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.51  E-value=2.2  Score=48.78  Aligned_cols=59  Identities=20%  Similarity=0.273  Sum_probs=26.1

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002541          291 QELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDS  349 (910)
Q Consensus       291 ~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~s  349 (910)
                      .+|..++.+|.-+..++..+|.++..+.+||..+...-+-....+..++...-.|.++.
T Consensus        81 ~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~l  139 (499)
T COG4372          81 PQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQEL  139 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444555444443333334444444433333333

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.51  E-value=3.4  Score=50.87  Aligned_cols=97  Identities=13%  Similarity=0.164  Sum_probs=57.3

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhHHHH
Q 002541          293 LERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAAR  372 (910)
Q Consensus       293 L~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~~a~k  372 (910)
                      ++.+..+|..|...... +.....++.+++.....+.++..+++.+..+........+.+..++.++++.+...+ +.|.
T Consensus       184 ~~~L~~dl~~~~~~~~~-~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~G-G~~~  261 (650)
T TIGR03185       184 IDRLAGDLTNVLRRRKK-SELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEG-GDLF  261 (650)
T ss_pred             HHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-chHH
Confidence            55556666666554332 223456777777777777777777777777777777777777777777776554422 3344


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 002541          373 AQLEVAKARHVAAVSELKS  391 (910)
Q Consensus       373 ~eLE~ar~q~a~~laEL~s  391 (910)
                      .+.+..+.+...+-.++..
T Consensus       262 ~~r~~Le~ei~~le~e~~e  280 (650)
T TIGR03185       262 EEREQLERQLKEIEAARKA  280 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4333333333333333333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PRK09039 hypothetical protein; Validated

Probab=96.50  E-value=0.23  Score=56.50  Aligned_cols=58  Identities=14%  Similarity=0.199  Sum_probs=30.5

Q ss_pred             HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 002541          632 AREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAAR  689 (910)
Q Consensus       632 are~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~  689 (910)
                      .+....+....+..+..+++.++..+..++..|..++......+..|..++.+|+.+.
T Consensus       128 ~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~  185 (343)
T PRK09039        128 EKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL  185 (343)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444455566666666666665555555555555555444444444444444443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.50  E-value=3.4  Score=50.71  Aligned_cols=48  Identities=13%  Similarity=0.234  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          379 KARHVAAVSELK-SVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKE  426 (910)
Q Consensus       379 r~q~a~~laEL~-svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~  426 (910)
                      |.+|+.-+..=. ..++.+..|..++..+..+|.....++.++...+..
T Consensus        13 rd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e   61 (617)
T PF15070_consen   13 RDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE   61 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334554443332 235555666666666666666666666655555443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.47  E-value=3.8  Score=50.93  Aligned_cols=120  Identities=23%  Similarity=0.240  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 002541          301 PEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKA  380 (910)
Q Consensus       301 ~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~~a~k~eLE~ar~  380 (910)
                      ..|..++...+.+..++..+|.+++-..+.|......+...    .+..|..+.+               ++.++--.+.
T Consensus        30 ~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~----~~~~e~~~~~---------------lr~e~ke~K~   90 (717)
T PF09730_consen   30 AYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKE----CEDLELERKR---------------LREEIKEYKF   90 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---------------HHHHHHHHHH
Confidence            45777888888888888888888888877777665555544    2222222222               2334444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          381 RHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEE  457 (910)
Q Consensus       381 q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~eAEe  457 (910)
                      |-+-.+.+..-..+|--.|++.+..+                  +...-..+.|..||-++.+.++..+....++..
T Consensus        91 rE~rll~dyselEeENislQKqvs~L------------------k~sQvefE~~Khei~rl~Ee~~~l~~qlee~~r  149 (717)
T PF09730_consen   91 REARLLQDYSELEEENISLQKQVSVL------------------KQSQVEFEGLKHEIKRLEEEIELLNSQLEEAAR  149 (717)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHH------------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555566666676666544                  445556667778888888877777776665554

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.41  E-value=0.34  Score=52.50  Aligned_cols=54  Identities=22%  Similarity=0.278  Sum_probs=22.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 002541          638 ELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKE  691 (910)
Q Consensus       638 eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KE  691 (910)
                      .|..+++.+......+..++..+..++.++..++...+-.+...+..+.++...
T Consensus        93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~  146 (239)
T COG1579          93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEAR  146 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444444333333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.39  E-value=1.7  Score=53.89  Aligned_cols=162  Identities=18%  Similarity=0.233  Sum_probs=99.9

Q ss_pred             HHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 002541          289 VEQELERSHEEMP-------EYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQ  361 (910)
Q Consensus       289 ~e~EL~~~qeeL~-------k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEq  361 (910)
                      ++.+|..++-||.       +++-|+..-.+.-..+..||...+...++|..+|-.+...+++=++.....+-|+.+...
T Consensus       423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~  502 (697)
T PF09726_consen  423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERR  502 (697)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555554       455555555554557888889999999999998888888887777777777777766543


Q ss_pred             h-------hhhhhhHHHHHHHHHHHH---------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          362 G-------IADDASVAARAQLEVAKA---------RHVAAVS-ELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISAS  424 (910)
Q Consensus       362 g-------ia~~~~~a~k~eLE~ar~---------q~a~~la-EL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aa  424 (910)
                      .       +........+++-.++|.         .++..++ -......|+.+|+.|+...-+........+.++..--
T Consensus       503 ~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~  582 (697)
T PF09726_consen  503 QRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE  582 (697)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1       111111111111111111         1222111 1123347788888888888888888887776666653


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          425 KEVEKTVEELTIELIATKESLESAHA  450 (910)
Q Consensus       425 k~~eekveeLt~EL~~lKEsLe~a~a  450 (910)
                      ++.....+.|...|.+|++--.+++.
T Consensus       583 ~e~~~~~e~L~~aL~amqdk~~~LE~  608 (697)
T PF09726_consen  583 KESEKDTEVLMSALSAMQDKNQHLEN  608 (697)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            55777888888888888886555543

; GO: 0016021 integral to membrane

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.37  E-value=0.003  Score=78.02  Aligned_cols=35  Identities=26%  Similarity=0.258  Sum_probs=19.2

Q ss_pred             ccccchHhhHHHHHHHHHHHH---HHhHHHHHHHHhHH
Q 002541          726 GVTLSLEEYYELSKRAHEAEE---QANMRVVAAISQIE  760 (910)
Q Consensus       726 ~Itls~eEy~~L~~ka~Eaee---~a~kKVa~A~aQvE  760 (910)
                      .+....+++..|..++..++.   .+...+.....+++
T Consensus       497 ~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~  534 (722)
T PF05557_consen  497 SLSSLSEELNELQKEIEELERENERLRQELEELESELE  534 (722)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556777777776666652   33444444444444

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=96.35  E-value=3.8  Score=49.60  Aligned_cols=65  Identities=20%  Similarity=0.315  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhHHHHHhHHHHHHHHHHHH
Q 002541          551 AVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSA--------LAAIRQREGMASVAVASLEAELDRTRSEI  622 (910)
Q Consensus       551 sL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~E--------LeelKeke~~a~~eI~sL~eELer~ksEL  622 (910)
                      .+.-++.+|+.+...+..       ++..++.|+.+|..++..        +.+....++...+.|..|..++++++.-+
T Consensus       236 ev~lim~eLe~aq~ri~~-------lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~  308 (629)
T KOG0963|consen  236 EVSLIMTELEDAQQRIVF-------LEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASL  308 (629)
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            344556555555555444       444444555555555443        33445555555666666666666655433

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.35  E-value=0.00092  Score=82.31  Aligned_cols=48  Identities=17%  Similarity=0.259  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 002541          649 EADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAAR  696 (910)
Q Consensus       649 EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAK  696 (910)
                      -++.||..+..+.........|+..++..+.+.+.++..+.++++.++
T Consensus       602 ~lekak~vi~~Ld~k~~~~~~e~~~L~~ql~e~~~~i~~lE~~~e~~k  649 (713)
T PF05622_consen  602 YLEKAKEVIKTLDPKQNPSSPEIQALKKQLQEKDRRIESLEKELEKSK  649 (713)
T ss_dssp             ------------------------------------------------
T ss_pred             HHHHHHHHhhccChhccCChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            344445544555555444555555566666666666666666665554

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.33  E-value=4.3  Score=50.04  Aligned_cols=53  Identities=23%  Similarity=0.283  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHhHHHHHHHHHHHHHHHHHH
Q 002541          576 LKVAATSLQSELEREKSALAAIRQREGMA--SVAVASLEAELDRTRSEIALVQMK  628 (910)
Q Consensus       576 L~~~vesLrsELek~K~ELeelKeke~~a--~~eI~sL~eELer~ksELe~~kak  628 (910)
                      .+..+..+..++..+..++..+..++..+  ...+..|..++..+..++..++..
T Consensus       389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~  443 (650)
T TIGR03185       389 LQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAE  443 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666666666666543  234555555555555555444443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.26  E-value=2.7  Score=52.04  Aligned_cols=90  Identities=19%  Similarity=0.193  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002541          420 AISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDSH-LWEKELKQAEEELQKLTQQILSAKDLR  498 (910)
Q Consensus       420 A~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~eAEe~r~~v~la~eqd~~-~~e~eL~qaEEEie~Lr~el~~a~dLe  498 (910)
                      +...-+++..++.+...+..-+++.+...+...--.-.+..  .+.+..++. -...+|..+..+.+++..+.   ..+.
T Consensus       683 l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~--~~~q~~e~~~t~~eel~a~~~e~k~l~~~q---~~l~  757 (970)
T KOG0946|consen  683 LQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQR--DLLQGAEASKTQNEELNAALSENKKLENDQ---ELLT  757 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchh--hHHhHHHhccCChHHHHHHHHHHHHHHHHH---HHHH
Confidence            33344455556666656666666655554432211111100  111111211 11346666677777766443   3566


Q ss_pred             HHHHHHHHHHHHHHHH
Q 002541          499 SKLDTASALLLDLKAE  514 (910)
Q Consensus       499 akLeea~~~Le~Lk~E  514 (910)
                      .+|...+...+++++.
T Consensus       758 ~~L~k~~~~~es~k~~  773 (970)
T KOG0946|consen  758 KELNKKNADIESFKAT  773 (970)
T ss_pred             HHHHhhhHHHHHHHHH
Confidence            6666666777777753

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=96.17  E-value=4.7  Score=48.85  Aligned_cols=47  Identities=19%  Similarity=0.241  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHH
Q 002541          572 EVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRT  618 (910)
Q Consensus       572 El~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~  618 (910)
                      +...|+..-..+..++.++....+.+..+......-+..|+..+...
T Consensus       391 e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~  437 (629)
T KOG0963|consen  391 ENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKV  437 (629)
T ss_pred             HHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhc
Confidence            34444444444444555555555555555555444455555555444

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.09  E-value=5.6  Score=49.13  Aligned_cols=12  Identities=42%  Similarity=0.614  Sum_probs=9.5

Q ss_pred             CCCcccchhhhc
Q 002541          153 ALPHTELASIAV  164 (910)
Q Consensus       153 ~~~~~~~~~~~~  164 (910)
                      .||+.-||+|-.
T Consensus       225 ~Lpq~~LA~IW~  236 (1118)
T KOG1029|consen  225 GLPQNQLAHIWT  236 (1118)
T ss_pred             CCchhhHhhhee
Confidence            789999998753

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.09  E-value=3.7  Score=47.07  Aligned_cols=120  Identities=18%  Similarity=0.268  Sum_probs=83.8

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhHH
Q 002541          291 QELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVA  370 (910)
Q Consensus       291 ~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~~a  370 (910)
                      .+|+.++.+|.-.+.++..++..|..+..|-+.+...       |+.+..+++                          .
T Consensus        74 fqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~E-------l~~~r~e~~--------------------------~  120 (499)
T COG4372          74 FQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSE-------LQKARQERE--------------------------A  120 (499)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH--------------------------H
Confidence            4577777777777777777777776666554444332       222222221                          2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          371 ARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKE  443 (910)
Q Consensus       371 ~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKE  443 (910)
                      .+.++..++..|+.+..+|..+..+-+.|+..+..+.+++.....++..+....+++..-++.|..+...|+-
T Consensus       121 v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~  193 (499)
T COG4372         121 VRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKL  193 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666788888888888888888999999888888888888888888878777777777777666554

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.06  E-value=7.5  Score=50.29  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=13.6

Q ss_pred             ccccCCCcccHHHHHHhcCCcc
Q 002541          252 LIDTTAPFESVKEVVSKFGGIV  273 (910)
Q Consensus       252 eIDT~aPf~SVK~AvslFGe~~  273 (910)
                      ....+.|-.+-+.+...+++..
T Consensus       407 ~~ss~~~~~~~~~~~~~~~~~~  428 (1317)
T KOG0612|consen  407 LLSSSTPLKNEKEANAERSDVD  428 (1317)
T ss_pred             hhccCCcccchhhccccccchh
Confidence            3444447777777777776553

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=95.94  E-value=2.7  Score=44.22  Aligned_cols=118  Identities=17%  Similarity=0.225  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Q 002541          577 KVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSL  656 (910)
Q Consensus       577 ~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKke  656 (910)
                      ...++..--.|.-...+|+.+-++...+.+.+..|..+++.+.+.+..+.................|.-+..-+.++...
T Consensus        80 drK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~r  159 (205)
T KOG1003|consen   80 DRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETR  159 (205)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhh
Confidence            33444445566777778888888888889999999999999999999999888888777777888888888889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 002541          657 AQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEA  694 (910)
Q Consensus       657 ae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEA  694 (910)
                      ++.+...++.+..+.+.+.-.+.....++..+.+++..
T Consensus       160 AE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~  197 (205)
T KOG1003|consen  160 AEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDE  197 (205)
T ss_pred             HHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            99999888888888887777777666666666666654

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=95.92  E-value=6  Score=48.06  Aligned_cols=224  Identities=16%  Similarity=0.164  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHhhhcchH
Q 002541          565 NIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKE---KEAREKTVELPK  641 (910)
Q Consensus       565 ~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kake---eeare~~~eL~~  641 (910)
                      .|..+...+..+...++.|-+-|+++-..-..+..........+..+....+.+..+++.+...=   ..--.....+..
T Consensus       272 ~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~  351 (560)
T PF06160_consen  272 ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEK  351 (560)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            45667777777777777788888888888888888888888888888888888888877775320   000112223445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-ccCC
Q 002541          642 QLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQ-RTDD  720 (910)
Q Consensus       642 eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~e~~~~~-~~~~  720 (910)
                      .+..+................-...+..........+..++.........+...+..|..|-..|..+...-... |...
T Consensus       352 ~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le  431 (560)
T PF06160_consen  352 QLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE  431 (560)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666666666655555555566666777777777777777777777777777777777777777665321111 1110


Q ss_pred             CCCCCccccchHhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541          721 VDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAK  798 (910)
Q Consensus       721 ~~~~~~Itls~eEy~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~aleeAleraE~Ae  798 (910)
                      ...--+|   .++|...-..       +...+.....++....--=..+...+..+...|+.....++.....|..++
T Consensus       432 k~nLPGl---p~~y~~~~~~-------~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E  499 (560)
T PF06160_consen  432 KSNLPGL---PEDYLDYFFD-------VSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAE  499 (560)
T ss_pred             HcCCCCC---CHHHHHHHHH-------HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0111122   2333322222       222333333333333333345666677777777777777777777777777

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PRK09039 hypothetical protein; Validated

Probab=95.92  E-value=0.95  Score=51.62  Aligned_cols=70  Identities=9%  Similarity=0.056  Sum_probs=37.6

Q ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          637 VELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAI  706 (910)
Q Consensus       637 ~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~i  706 (910)
                      ........+...++..++.++..++..+..+..++..++....+.+.+|.....++..+.+.+..-|..+
T Consensus       126 ~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~  195 (343)
T PRK09039        126 DSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRY  195 (343)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334444444444555555555555555555555555555555566666666666666555544334433

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.91  E-value=1.1  Score=45.16  Aligned_cols=40  Identities=23%  Similarity=0.353  Sum_probs=20.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002541          638 ELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAG  677 (910)
Q Consensus       638 eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKae  677 (910)
                      .|...++.+..+++.+...+..+...++.+...++.....
T Consensus        77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRk  116 (143)
T PF12718_consen   77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERK  116 (143)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            3444555555555555555555555555555554444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=95.80  E-value=1.4  Score=44.27  Aligned_cols=61  Identities=21%  Similarity=0.317  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Q 002541          565 NIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALV  625 (910)
Q Consensus       565 ~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~  625 (910)
                      .|..+..+.+.+...+.+|..+|+.....+..+...-..+...+..|..++..+..++..+
T Consensus        11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L   71 (140)
T PF10473_consen   11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQL   71 (140)
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555666666666666655555555555555555555555555555444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=95.75  E-value=2.7  Score=48.15  Aligned_cols=177  Identities=24%  Similarity=0.306  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHH-HHHHhhhhhhhhHHHHHHHHHHH
Q 002541          303 YRKRSEAAEVAKNQVLKELDQ-TKRLVEELKLNLERAQTEEHQ-AKQDSELAKLRV-EEMEQGIADDASVAARAQLEVAK  379 (910)
Q Consensus       303 ~Keqle~aE~~k~qal~ELe~-aKr~ieeL~~kLE~a~~e~~~-A~e~sE~ak~r~-~ELEqgia~~~~~a~k~eLE~ar  379 (910)
                      |..-+..+|...-+..++|.+ -.|.++-|...-+++..+.-- .+-+.|..+.-. +||+.++.-  +...+...+..|
T Consensus       339 CERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeK--sqSvnsdveaLR  416 (593)
T KOG4807|consen  339 CERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEK--SQSVNSDVEALR  416 (593)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHh--hhccccChHHHH
Confidence            344444555555555555543 234444444444444433211 123444455444 455554432  123455566677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Q 002541          380 ARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKE-----------VEKTVEELTIELIATKESLESA  448 (910)
Q Consensus       380 ~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~-----------~eekveeLt~EL~~lKEsLe~a  448 (910)
                      .||-   .+|.+|+.||+-|..+|..-.=+-..-.+.+++-..+++.           |.+....|.+||..|+..|..-
T Consensus       417 rQyl---eelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgd  493 (593)
T KOG4807|consen  417 RQYL---EELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGD  493 (593)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccC
Confidence            6774   6889999999999998876544433333333322222222           3334445556666666655431


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002541          449 HAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQIL  492 (910)
Q Consensus       449 ~aa~~eAEe~r~~v~la~eqd~~~~e~eL~qaEEEie~Lr~el~  492 (910)
                      --.        -+.-++++++..+++--|...+.+|+=|+++|+
T Consensus       494 GgG--------tGsplaqgkdayELEVLLRVKEsEiQYLKqEis  529 (593)
T KOG4807|consen  494 GGG--------TGSPLAQGKDAYELEVLLRVKESEIQYLKQEIS  529 (593)
T ss_pred             CCC--------CCCccccCcchhhHHHHHHhhHHHHHHHHHHHH
Confidence            100        011244566666666677777777877777775

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=95.75  E-value=8.5  Score=48.42  Aligned_cols=247  Identities=25%  Similarity=0.261  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541          384 AAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAA  463 (910)
Q Consensus       384 ~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~eAEe~r~~v~  463 (910)
                      .+++=++.+..|.-.|+++|+.+...+..+..++..+..+                 ||+=+.+.+.+..+-|....++.
T Consensus        14 eav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~a-----------------Lkec~~qlr~~ree~eq~i~~~~   76 (769)
T PF05911_consen   14 EAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGA-----------------LKECMRQLRQVREEQEQKIHEAV   76 (769)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHH-----------------HHHHHHHHHHhhHHHHHHHHHHH


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhhccccCCCCCCch
Q 002541          464 MARDQDSHLWEKELKQAEEELQKLTQQILSAK-DLRSKLDTASALLLDLKAE---LSAYMESKLKEESNEEGHSNGELEE  539 (910)
Q Consensus       464 la~eqd~~~~e~eL~qaEEEie~Lr~el~~a~-dLeakLeea~~~Le~Lk~E---La~~lE~kL~e~~~ei~~lq~~L~E  539 (910)
                      +                     +.-.+..+.+ +|+.+|.+++..|..+..|   |...+..+-.               
T Consensus        77 ~---------------------~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~---------------  120 (769)
T PF05911_consen   77 A---------------------KKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEK---------------  120 (769)
T ss_pred             H---------------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---------------


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHhHH
Q 002541          540 PERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVA-------VASLE  612 (910)
Q Consensus       540 ~ek~~~~~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~e-------I~sL~  612 (910)
                          ....+.+....+..++..+...|+.+..+...|+-.+-.|..||+-...+.+-.+.--..+..+       |..|+
T Consensus       121 ----~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLE  196 (769)
T PF05911_consen  121 ----LIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLE  196 (769)
T ss_pred             ----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH------------------------------HHHHHHHHH
Q 002541          613 AELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQA------------------------------KSLAQAAGE  662 (910)
Q Consensus       613 eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeA------------------------------Kkeae~ae~  662 (910)
                      +|=+|++.          =.|....+ +..|.+++.|++..                              .++...+-.
T Consensus       197 aEC~rLr~----------l~rk~lpg-paa~a~mk~ev~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  265 (769)
T PF05911_consen  197 AECQRLRA----------LVRKKLPG-PAALAQMKNEVESLGRDSGENRRRRSPSRPSSPHDFSPQNPQKRSKESEFLTE  265 (769)
T ss_pred             HHHHHHHH----------HHhccCCC-hHHHHHhHHHHHHhccccccccCCCCCCcccccccccccccccchhhhHHHHH


Q ss_pred             HHHHHHHHHHHHHhcHHHHHHHHHHHHHHH--HHHHHH
Q 002541          663 ELHKAKEEAEQAKAGASTIESRLTAARKEI--EAARAS  698 (910)
Q Consensus       663 EL~~lkeEaE~aKaeI~taE~rL~aA~KEl--EAAKAs  698 (910)
                      .|..+.+|+..+|..+..-..+|+..+-+|  .+.|-+
T Consensus       266 ~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~  303 (769)
T PF05911_consen  266 RLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLS  303 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

The function of this family is unknown.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.56  E-value=9.4  Score=47.60  Aligned_cols=73  Identities=23%  Similarity=0.296  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          381 RHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEA---ISASKEVEKTVEELTIELIATKESLESAHAAHL  453 (910)
Q Consensus       381 q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA---~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~  453 (910)
                      .|.....++.-.|-+|..+..-..++....+...-+-++.   ....+.+....+.|+.++..-....++.++...
T Consensus       700 ~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~  775 (970)
T KOG0946|consen  700 EHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQR  775 (970)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence            3444444444444444444443334433333222222222   222344444555566666444444455444433

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.51  E-value=8  Score=46.55  Aligned_cols=59  Identities=22%  Similarity=0.271  Sum_probs=33.1

Q ss_pred             hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002541          545 HTDIQAAVASAKKE-LEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGM  603 (910)
Q Consensus       545 ~~~l~esL~sakkE-Lee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~  603 (910)
                      ..+++..+...-++ +++....+.....+...|+..+..+.+-+...+..+..+..++..
T Consensus       412 ~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~  471 (581)
T KOG0995|consen  412 GVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKK  471 (581)
T ss_pred             cccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555554444443 356777777777777777766655555555555554444444443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=95.49  E-value=7  Score=45.74  Aligned_cols=28  Identities=7%  Similarity=0.202  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 002541          666 KAKEEAEQAKAGASTIESRLTAARKEIE  693 (910)
Q Consensus       666 ~lkeEaE~aKaeI~taE~rL~aA~KElE  693 (910)
                      .....+......|...+..+.+-+.++.
T Consensus       161 ~~i~~l~~~~~~l~~~~~~iaaeq~~l~  188 (420)
T COG4942         161 ERIDALKATLKQLAAVRAEIAAEQAELT  188 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444444444444443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=95.23  E-value=11  Score=46.44  Aligned_cols=40  Identities=15%  Similarity=0.272  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          546 TDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQS  585 (910)
Q Consensus       546 ~~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrs  585 (910)
                      ..+...|..+..+|..++..+.....++..++...+.+-+
T Consensus       198 keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~  237 (617)
T PF15070_consen  198 KELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLG  237 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3455556666666666666666666666666654443333

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.19  E-value=3.4  Score=40.80  Aligned_cols=43  Identities=23%  Similarity=0.462  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          381 RHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISA  423 (910)
Q Consensus       381 q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~a  423 (910)
                      .|+.++..|..++.++..++.++..+....+.+..........
T Consensus        53 ~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~s   95 (132)
T PF07926_consen   53 KHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEAS   95 (132)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5999999999999999999999999999998888877665544

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.12  E-value=2.1  Score=43.03  Aligned_cols=54  Identities=13%  Similarity=0.257  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 002541          553 ASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASV  606 (910)
Q Consensus       553 ~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~  606 (910)
                      ..+...+..+.........+|.+|+..+..|..+|+.+...|..++........
T Consensus        17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~   70 (143)
T PF12718_consen   17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK   70 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            345555555556666666777777777777777777777777777666665543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=95.09  E-value=11  Score=45.45  Aligned_cols=35  Identities=20%  Similarity=0.234  Sum_probs=23.7

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          486 KLTQQILSAKDLRSKLDTASALLLDLKAELSAYME  520 (910)
Q Consensus       486 ~Lr~el~~a~dLeakLeea~~~Le~Lk~ELa~~lE  520 (910)
                      .+...+....+++..++-+...+...+.|+..|-.
T Consensus       208 ~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~  242 (511)
T PF09787_consen  208 HYIEYLRESGELQEQLELLKAEGESEEAELQQYKQ  242 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            33344444467777777777777777878877764

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF13514 AAA_27: AAA domain

Probab=94.94  E-value=18  Score=47.44  Aligned_cols=42  Identities=17%  Similarity=0.256  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 002541          775 EVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHE  816 (910)
Q Consensus       775 ~~~~Eie~~k~aleeAleraE~Ae~aK~avE~ELRkwR~e~e  816 (910)
                      .+..+++..+..+.+..++--...-+...++..+.++|.++.
T Consensus       937 ~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r~~~~  978 (1111)
T PF13514_consen  937 ELEQEREEAEAELEELAEEWAALRLAAELLEEAIERYREERQ  978 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344555566666666666655666677778888888887643

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=94.86  E-value=8.4  Score=43.14  Aligned_cols=56  Identities=23%  Similarity=0.295  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          391 SVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLE  446 (910)
Q Consensus       391 svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe  446 (910)
                      ..-..+..++....++...++....++.+.......+-.++.+|..++..+++..+
T Consensus        45 eln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~  100 (294)
T COG1340          45 ELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN  100 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34455555666666667777777777777777777777777777777766666555

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=94.36  E-value=20  Score=45.25  Aligned_cols=73  Identities=19%  Similarity=0.277  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          372 RAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKES  444 (910)
Q Consensus       372 k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEs  444 (910)
                      +.+++.++.-+......--..++..++++..|..+.......+.+-.+..+.+...+.-..++..+...+.+.
T Consensus       402 r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~  474 (980)
T KOG0980|consen  402 RTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQ  474 (980)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            3344444333333333333444555555555555555555554444444444443333333333333333333

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=94.22  E-value=23  Score=45.49  Aligned_cols=22  Identities=27%  Similarity=0.330  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 002541          769 SLERLEEVNKEIATRKEALKVA  790 (910)
Q Consensus       769 ~l~Kle~~~~Eie~~k~aleeA  790 (910)
                      .+.++.....+++..+..++.+
T Consensus       717 ~~~~l~~~~~~~~~~~~~~~~~  738 (908)
T COG0419         717 LIEELESRKAELEELKKELEKL  738 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444433333333

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.02  E-value=15  Score=43.52  Aligned_cols=153  Identities=18%  Similarity=0.210  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHH
Q 002541          551 AVASAKKELEEVKLNIEKATAEVNCLKVAA---------------TSLQSELEREKSALAAIRQREGMASVAVASLEAEL  615 (910)
Q Consensus       551 sL~sakkELee~K~~Leka~eEl~sL~~~v---------------esLrsELek~K~ELeelKeke~~a~~eI~sL~eEL  615 (910)
                      .+..+..++..++.++..+...+..++..+               ..++.+|...+.++..+..++....-.+..+..++
T Consensus       205 ~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi  284 (498)
T TIGR03007       205 EISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREI  284 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence            344555555555555555555555555432               36777888888888888888888888888888887


Q ss_pred             HHHHHHHHHHHHHHHH--HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHH
Q 002541          616 DRTRSEIALVQMKEKE--AREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGA---STIESRLTAARK  690 (910)
Q Consensus       616 er~ksELe~~kakeee--are~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI---~taE~rL~aA~K  690 (910)
                      ..++..+.........  .....  ...-++.+...+..++.+...++.++..+..+....+..+   ...+.++....+
T Consensus       285 ~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~R  362 (498)
T TIGR03007       285 AQLEEQKEEEGSAKNGGPERGEI--ANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNR  362 (498)
T ss_pred             HHHHHHHHhhccccccCcccccc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            7777765433211000  00000  0111233333444444444444444444444444444332   344556666666


Q ss_pred             HHHHHHHHHHHHHHH
Q 002541          691 EIEAARASEKLALAA  705 (910)
Q Consensus       691 ElEAAKAsEa~Ala~  705 (910)
                      +++.++..=...+..
T Consensus       363 e~~~~~~~Y~~l~~r  377 (498)
T TIGR03007       363 DYEVNKSNYEQLLTR  377 (498)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            665554433333333

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=93.92  E-value=22  Score=44.18  Aligned_cols=159  Identities=16%  Similarity=0.165  Sum_probs=92.8

Q ss_pred             HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002541          632 AREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQE  711 (910)
Q Consensus       632 are~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~e  711 (910)
                      ......++...+.++-.++.+.       ....-++..+...+.....++...+......+...+++.......|+.|.+
T Consensus       459 ~gsA~ed~Qeqn~kL~~el~ek-------dd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~lee  531 (698)
T KOG0978|consen  459 IGSAFEDMQEQNQKLLQELREK-------DDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEE  531 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555554443       333344455555666666666777777777777778888888888888776


Q ss_pred             hhhhcccCCCCCCCccccchHhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          712 SESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAM  791 (910)
Q Consensus       712 ~~~~~~~~~~~~~~~Itls~eEy~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~aleeAl  791 (910)
                      ..-.-..   .. +++   ..|-.    .....-+...+++..+...++..+..-.....+|+.++..+.+...+++.-.
T Consensus       532 q~~~lt~---~~-~~l---~~el~----~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~  600 (698)
T KOG0978|consen  532 QERGLTS---NE-SKL---IKELT----TLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEK  600 (698)
T ss_pred             HHHHhhH---hh-hhh---HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4332110   00 000   11111    1223334555666666666677777777777777777777777777777666


Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHH
Q 002541          792 EKAEKAKEGKLGIEQELRKWRAEH  815 (910)
Q Consensus       792 eraE~Ae~aK~avE~ELRkwR~e~  815 (910)
                      .+.-.++       .|+-+++-+-
T Consensus       601 ~k~~rle-------EE~e~L~~kl  617 (698)
T KOG0978|consen  601 FKRKRLE-------EELERLKRKL  617 (698)
T ss_pred             HHHHHHH-------HHHHHHHHHH
Confidence            6666555       6666666543

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=93.90  E-value=14  Score=41.82  Aligned_cols=51  Identities=25%  Similarity=0.284  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 002541          642 QLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEI  692 (910)
Q Consensus       642 eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KEl  692 (910)
                      +|..++.++......+...+.++..++.+.......|.....+...++.++
T Consensus       210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI  260 (325)
T PF08317_consen  210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI  260 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444444444444444443333

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=93.81  E-value=23  Score=44.03  Aligned_cols=88  Identities=18%  Similarity=0.214  Sum_probs=56.1

Q ss_pred             cccHHHHHHhcCCccc----------ccccccchH--HHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          259 FESVKEVVSKFGGIVD----------WKAHRMQTV--ERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKR  326 (910)
Q Consensus       259 f~SVK~AvslFGe~~~----------~K~~r~~~~--ER~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr  326 (910)
                      +.|=+++++.|++..|          |+.++..-.  .-...+..+-+++|..+..+.+..-.........++-+.-.--
T Consensus        11 i~~~~~~~~~~~~~~D~lq~~~e~~~~~~~~~~e~l~~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~   90 (698)
T KOG0978|consen   11 IKSEKEAVSLVLIQIDDLQTQAEELARRLNRVEEALTVLFDELAEENEKLQNLADHLQEKHATLSEQISELLDKISTAET   90 (698)
T ss_pred             HHhhhhhhcccchhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4567888888887765          443220000  0112345556777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 002541          327 LVEELKLNLERAQTEEHQAK  346 (910)
Q Consensus       327 ~ieeL~~kLE~a~~e~~~A~  346 (910)
                      .++++...|+.++-+...-.
T Consensus        91 ~~~e~~~~le~~~~d~eki~  110 (698)
T KOG0978|consen   91 EVDELEQQLEDLQADLEKIR  110 (698)
T ss_pred             cHHHHHHhHHHHHHHHHHHH
Confidence            77778877777777644433

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=93.73  E-value=14  Score=42.18  Aligned_cols=20  Identities=20%  Similarity=0.144  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 002541          651 DQAKSLAQAAGEELHKAKEE  670 (910)
Q Consensus       651 EeAKkeae~ae~EL~~lkeE  670 (910)
                      ..++.....++.++..++.+
T Consensus       206 ~~~~~~l~~~~~~l~~~~~~  225 (423)
T TIGR01843       206 AEAQGELGRLEAELEVLKRQ  225 (423)
T ss_pred             HHHHhHHHHHHHHHHHHHHH
Confidence            33333333333333333333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=93.57  E-value=1.9  Score=49.65  Aligned_cols=75  Identities=17%  Similarity=0.225  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002541          564 LNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVE  638 (910)
Q Consensus       564 ~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~e  638 (910)
                      ..|++.......|...++.|..++...+..|..++++++.++..|..+..+|.++..+|+.++....+-...|.|
T Consensus       252 ~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD  326 (359)
T PF10498_consen  252 KTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTD  326 (359)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            444555555566667888888999999999999999999999999999999999999998888877766666665

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=93.26  E-value=24  Score=42.46  Aligned_cols=16  Identities=13%  Similarity=0.067  Sum_probs=8.4

Q ss_pred             HhhhcchHHHHHHHHH
Q 002541          634 EKTVELPKQLQVAAQE  649 (910)
Q Consensus       634 e~~~eL~~eLqqls~E  649 (910)
                      +.+.++|.....+...
T Consensus       436 ~nLPGlPe~~l~l~~~  451 (570)
T COG4477         436 SNLPGLPETFLSLFFT  451 (570)
T ss_pred             cCCCCCcHHHHHHHHh
Confidence            4445666655554443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=93.24  E-value=21  Score=41.87  Aligned_cols=33  Identities=15%  Similarity=0.303  Sum_probs=16.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 002541          608 VASLEAELDRTRSEIALVQMKEKEAREKTVELP  640 (910)
Q Consensus       608 I~sL~eELer~ksELe~~kakeeeare~~~eL~  640 (910)
                      ...|..++..-+..++.+...+...+..+..+.
T Consensus       212 ~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e  244 (420)
T COG4942         212 LAQLNSELSADQKKLEELRANESRLKNEIASAE  244 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            344445555555555555555544444443333

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=93.13  E-value=13  Score=39.25  Aligned_cols=130  Identities=25%  Similarity=0.341  Sum_probs=79.5

Q ss_pred             HHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HHHHHhhHHHHHHHHHHH
Q 002541          284 ERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLE-RAQTE---EHQAKQDSELAKLRVEEM  359 (910)
Q Consensus       284 ER~~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE-~a~~e---~~~A~e~sE~ak~r~~EL  359 (910)
                      .|...++.+|+.+|+-+..+..++..++.    +..|-++..+.|+.-..+++ +....   ..-|+.-.+-+-..+.+.
T Consensus        11 rri~~leeele~aqErl~~a~~KL~Eaeq----~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEV   86 (205)
T KOG1003|consen   11 RRIQLLEEELDRAQERLATALQKLEEAEQ----AADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEV   86 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56678899999999999999999988864    44566667777776666664 33333   333333333344444443


Q ss_pred             HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          360 EQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAIS  422 (910)
Q Consensus       360 Eqgia~~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~  422 (910)
                      -..+     +..-.+|+.+-.+-.........+-+++.-+...+.++.-.-..+.++.+....
T Consensus        87 arkL-----~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~  144 (205)
T KOG1003|consen   87 ARKL-----VIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEE  144 (205)
T ss_pred             HHHH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHH
Confidence            3222     233456777776666666666666677777766666665555444444433333

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.78  E-value=29  Score=42.08  Aligned_cols=56  Identities=11%  Similarity=0.057  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541          547 DIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREG  602 (910)
Q Consensus       547 ~l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~  602 (910)
                      .+..-+.....++.+....+.....-++.+...+..+++.|.....++..+-.++.
T Consensus       422 ~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~  477 (581)
T KOG0995|consen  422 LLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYE  477 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555555555555555555555555555555444333

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=92.32  E-value=12  Score=38.60  Aligned_cols=116  Identities=20%  Similarity=0.232  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 002541          564 LNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQL  643 (910)
Q Consensus       564 ~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eL  643 (910)
                      ..++..+.+|..+-   +..|.|++..+.+|..++.........++.|...-...+..|..+...-..            
T Consensus         9 ~~ie~sK~qIf~I~---E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~------------   73 (159)
T PF05384_consen    9 DTIESSKEQIFEIA---EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDR------------   73 (159)
T ss_pred             HHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------------
Confidence            34556666666554   677899999999999999999999999999999999999988766432110            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 002541          644 QVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAA  695 (910)
Q Consensus       644 qqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAA  695 (910)
                       =...++.+|=..+..++-+|.-+++.-.+++..-+.+|.+|..+..-++.|
T Consensus        74 -ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierA  124 (159)
T PF05384_consen   74 -YSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERA  124 (159)
T ss_pred             -cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             012345555566777788888888888888888888888888888877764

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=92.31  E-value=21  Score=40.72  Aligned_cols=34  Identities=18%  Similarity=0.107  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH
Q 002541          651 DQAKSLAQAAGEELHKAKEEAEQAKAGASTIESR  684 (910)
Q Consensus       651 EeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~r  684 (910)
                      ..++.....++.++..++.+...++..+..++..
T Consensus       199 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~  232 (423)
T TIGR01843       199 LELERERAEAQGELGRLEAELEVLKRQIDELQLE  232 (423)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=92.24  E-value=39  Score=42.39  Aligned_cols=46  Identities=11%  Similarity=0.094  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHH
Q 002541          578 VAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIA  623 (910)
Q Consensus       578 ~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe  623 (910)
                      ..+..|+.++.....++..+..++....-.+..+..++..++..+.
T Consensus       288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~  333 (754)
T TIGR01005       288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIR  333 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Confidence            3455666677777777777766666666666666666666666553

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=92.24  E-value=24  Score=39.90  Aligned_cols=90  Identities=19%  Similarity=0.193  Sum_probs=61.6

Q ss_pred             HHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002541          598 RQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAG  677 (910)
Q Consensus       598 Keke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKae  677 (910)
                      -.++..+...|..|.++|.+...+...-+..+......+.++...++++..|.+++...+...+.-=..+       .++
T Consensus       205 v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L-------~aE  277 (306)
T PF04849_consen  205 VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQL-------QAE  277 (306)
T ss_pred             HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHH
Confidence            3566777888888888888888888887787777788888888888888888777766655544433333       334


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 002541          678 ASTIESRLTAARKEIEA  694 (910)
Q Consensus       678 I~taE~rL~aA~KElEA  694 (910)
                      +.+++.|+.....++..
T Consensus       278 L~elqdkY~E~~~mL~E  294 (306)
T PF04849_consen  278 LQELQDKYAECMAMLHE  294 (306)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            45555555554444433

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.19  E-value=22  Score=39.41  Aligned_cols=51  Identities=16%  Similarity=0.332  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          549 QAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQ  599 (910)
Q Consensus       549 ~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKe  599 (910)
                      +..+..+.++|+.+-..+..+...+..++..+..++.++...+.++..+++
T Consensus        44 ~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~   94 (265)
T COG3883          44 QKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE   94 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444444444444433

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=92.19  E-value=38  Score=42.05  Aligned_cols=126  Identities=18%  Similarity=0.202  Sum_probs=61.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCchhhhhhhhHHH
Q 002541          470 SHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQ  549 (910)
Q Consensus       470 ~~~~e~eL~qaEEEie~Lr~el~~a~dLeakLeea~~~Le~Lk~ELa~~lE~kL~e~~~ei~~lq~~L~E~ek~~~~~l~  549 (910)
                      ...|+.+-....+.++.|.++=.   .|.+.++-....+.+|..=| .-.|..|..-..--..++..-...-......-.
T Consensus       237 ~~~we~Er~~L~~tVq~L~edR~---~L~~T~ELLqVRvqSLt~IL-~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WR  312 (739)
T PF07111_consen  237 SQAWEPEREELLETVQHLQEDRD---ALQATAELLQVRVQSLTDIL-TLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWR  312 (739)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCCCCCCCchhHHHHHHHHHHHH
Confidence            45788888888888888887643   67777776666666665422 222222221000001111110111111122224


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541          550 AAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREG  602 (910)
Q Consensus       550 esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~  602 (910)
                      +++-.+.-.|......+   .+.+..++..|.+|..++.....+-.-+..-+.
T Consensus       313 EKVFaLmVQLkaQeleh---~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLq  362 (739)
T PF07111_consen  313 EKVFALMVQLKAQELEH---RDSVKQLRGQVASLQEEVASQQQEQAILQHSLQ  362 (739)
T ss_pred             HHHHHHHHHhhHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555555554444332   333444566666666666666555555544443

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=92.13  E-value=13  Score=36.66  Aligned_cols=14  Identities=14%  Similarity=0.245  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHHHH
Q 002541          584 QSELEREKSALAAI  597 (910)
Q Consensus       584 rsELek~K~ELeel  597 (910)
                      +.+|.........+
T Consensus        30 ~~dl~~q~~~a~~A   43 (132)
T PF07926_consen   30 REDLESQAKIAQEA   43 (132)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>smart00787 Spc7 Spc7 kinetochore protein

Probab=91.95  E-value=11  Score=42.62  Aligned_cols=27  Identities=15%  Similarity=0.226  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          571 AEVNCLKVAATSLQSELEREKSALAAI  597 (910)
Q Consensus       571 eEl~sL~~~vesLrsELek~K~ELeel  597 (910)
                      ..+..++..+..|+..+..++.++..+
T Consensus       165 ~~~~~l~~~~~~l~~~~~~L~~e~~~L  191 (312)
T smart00787      165 KELELLNSIKPKLRDRKDALEEELRQL  191 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=91.82  E-value=26  Score=39.40  Aligned_cols=26  Identities=15%  Similarity=0.224  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          433 ELTIELIATKESLESAHAAHLEAEEQ  458 (910)
Q Consensus       433 eLt~EL~~lKEsLe~a~aa~~eAEe~  458 (910)
                      -|..||+.|+-.++..+....+-|..
T Consensus         3 ~Lq~eia~LrlEidtik~q~qekE~k   28 (305)
T PF14915_consen    3 MLQDEIAMLRLEIDTIKNQNQEKEKK   28 (305)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            36778888888888877766554443

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=91.81  E-value=54  Score=43.05  Aligned_cols=20  Identities=10%  Similarity=0.082  Sum_probs=9.9

Q ss_pred             hhhHHHHHHHHHHHHHHhhh
Q 002541          801 KLGIEQELRKWRAEHEQRRK  820 (910)
Q Consensus       801 K~avE~ELRkwR~e~eq~rk  820 (910)
                      ...+..++..++.+...|..
T Consensus       862 ~~~~~~~~~~~~~~~~~~~~  881 (1047)
T PRK10246        862 QQALMQQIAQATQQVEDWGY  881 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555544

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=91.72  E-value=27  Score=39.52  Aligned_cols=40  Identities=23%  Similarity=0.228  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 002541          654 KSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIE  693 (910)
Q Consensus       654 Kkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElE  693 (910)
                      +..+..++.++..+...++.....+..+...|..+.+-.+
T Consensus       229 k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~  268 (325)
T PF08317_consen  229 KKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE  268 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333344444444444444444444333

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=91.71  E-value=27  Score=39.48  Aligned_cols=63  Identities=25%  Similarity=0.336  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          373 AQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELT  435 (910)
Q Consensus       373 ~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt  435 (910)
                      ..++....+|+..+.+...+..++..++..+..+.-+++.......-+......++..-.+|+
T Consensus        22 eK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQ   84 (309)
T PF09728_consen   22 EKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQ   84 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666778888888888888877777777777777766655544333333333333333333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=91.62  E-value=20  Score=39.02  Aligned_cols=38  Identities=16%  Similarity=0.202  Sum_probs=16.1

Q ss_pred             HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541          672 EQAKAGASTIESRLTAARKEIEAARASEKLALAAIKAL  709 (910)
Q Consensus       672 E~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL  709 (910)
                      ......+...+.++..+...+...+..--.-+..|=-+
T Consensus       122 ~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI  159 (302)
T PF10186_consen  122 EELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPI  159 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            33334444444454444444444444333333333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=91.57  E-value=21  Score=37.81  Aligned_cols=140  Identities=17%  Similarity=0.204  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          369 VAARAQLEVAKARHVA---AVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESL  445 (910)
Q Consensus       369 ~a~k~eLE~ar~q~a~---~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsL  445 (910)
                      ..+..++...+.++..   ++-.-+.+++||..|+.-+..+-+.......++..+.+...-+..++..|+.+-..+....
T Consensus        39 a~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~  118 (193)
T PF14662_consen   39 AQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAER  118 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence            3344455555555443   3444456799999999999999999999999898888888888888888888888887777


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002541          446 ESAHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAEL  515 (910)
Q Consensus       446 e~a~aa~~eAEe~r~~v~la~eqd~~~~e~eL~qaEEEie~Lr~el~~a~dLeakLeea~~~Le~Lk~EL  515 (910)
                      +-....+.+.-....  .+++  ....++.-+-+.+..+..-...+   .+|...+++-......||.|+
T Consensus       119 ~~lk~~~~eL~~~~~--~Lq~--Ql~~~e~l~~~~da~l~e~t~~i---~eL~~~ieEy~~~teeLR~e~  181 (193)
T PF14662_consen  119 DGLKKRSKELATEKA--TLQR--QLCEFESLICQRDAILSERTQQI---EELKKTIEEYRSITEELRLEK  181 (193)
T ss_pred             hhHHHHHHHHHHhhH--HHHH--HHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHH
Confidence            776665544322211  1322  12244555555566665555544   367777777777777777666

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=91.36  E-value=7.4  Score=41.43  Aligned_cols=74  Identities=20%  Similarity=0.362  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 002541          554 SAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQM  627 (910)
Q Consensus       554 sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~ka  627 (910)
                      -++..|.+....+..--.+|-+|+..+..++..+......+..++........++.....+|.+.+.+.+.++.
T Consensus        14 LLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLre   87 (202)
T PF06818_consen   14 LLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLRE   87 (202)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhh
Confidence            35555555555555555566666655555555555555555555555555555555555555555555444433

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=91.33  E-value=55  Score=42.20  Aligned_cols=237  Identities=15%  Similarity=0.180  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002541          388 ELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARD  467 (910)
Q Consensus       388 EL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~eAEe~r~~v~la~e  467 (910)
                      +|...-.+|..|+.+...+.+.++.......-+......+.+-|+.+..... .+..++....+.--         +   
T Consensus       175 ~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~-~~~~Ie~l~~k~~~---------v---  241 (1072)
T KOG0979|consen  175 ELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERER-KKSKIELLEKKKKW---------V---  241 (1072)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccc---------c---


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCchhhhhhhhH
Q 002541          468 QDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTD  547 (910)
Q Consensus       468 qd~~~~e~eL~qaEEEie~Lr~el~~a~dLeakLeea~~~Le~Lk~ELa~~lE~kL~e~~~ei~~lq~~L~E~ek~~~~~  547 (910)
                       ....+.+++.+..+..++++.++   +.+.-...-.......|+++.                              ..
T Consensus       242 -~y~~~~~ey~~~k~~~~r~k~~~---r~l~k~~~pi~~~~eeLe~~~------------------------------~e  287 (1072)
T KOG0979|consen  242 -EYKKHDREYNAYKQAKDRAKKEL---RKLEKEIKPIEDKKEELESEK------------------------------KE  287 (1072)
T ss_pred             -chHhhhHHHHHHHHHHHHHHHHH---HHHHHhhhhhhhhhhhHHhHH------------------------------Hh


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 002541          548 IQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQM  627 (910)
Q Consensus       548 l~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~ka  627 (910)
                      +......+..++.+....+....+.+..++       +++...+..++.++.+...-...|.+....+..++.+|..+  
T Consensus       288 t~~~~s~~~~~~~e~~~k~~~~~ek~~~~~-------~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~--  358 (1072)
T KOG0979|consen  288 TRSKISQKQRELNEALAKVQEKFEKLKEIE-------DEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQET--  358 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--


Q ss_pred             HHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 002541          628 KEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLT  686 (910)
Q Consensus       628 keeeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~  686 (910)
                            ....++..+++.+..+..+.+.....-..+..+.+....+....+.....++.
T Consensus       359 ------~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~l~~~kr~~~  411 (1072)
T KOG0979|consen  359 ------EDPENPVEEDQEIMKEVLQKKSSKLRDSRQEIDAEQLKSQKLRDLENKKRKLK  411 (1072)
T ss_pred             ------CCccccchhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=90.93  E-value=2.6  Score=44.10  Aligned_cols=9  Identities=44%  Similarity=0.571  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q 002541          661 GEELHKAKE  669 (910)
Q Consensus       661 e~EL~~lke  669 (910)
                      +..+.+++.
T Consensus       164 e~k~~~l~~  172 (194)
T PF08614_consen  164 EEKLRKLEE  172 (194)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=90.84  E-value=26  Score=37.59  Aligned_cols=135  Identities=16%  Similarity=0.201  Sum_probs=67.1

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhh
Q 002541          289 VEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDAS  368 (910)
Q Consensus       289 ~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqgia~~~~  368 (910)
                      ...++..+..+-..+...+...+..-+.+....+..|.+++.++.+=+.+................|+..|-. -+...-
T Consensus        67 ~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~-hAeekL  145 (207)
T PF05010_consen   67 SEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKA-HAEEKL  145 (207)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            3445666666666667777777777777777777777777777766666655544444444444444444421 111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          369 VAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEV  427 (910)
Q Consensus       369 ~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~  427 (910)
                      ..+..+++.++..|.   +++....-.|.+.+-.+.++-.....-.+..+|+.+...++
T Consensus       146 ~~ANeei~~v~~~~~---~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL  201 (207)
T PF05010_consen  146 EKANEEIAQVRSKHQ---AELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL  201 (207)
T ss_pred             HHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            112223333332222   23333344444554455444444444444444444444433

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=90.62  E-value=16  Score=41.51  Aligned_cols=52  Identities=21%  Similarity=0.248  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 002541          642 QLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIE  693 (910)
Q Consensus       642 eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElE  693 (910)
                      +|.....+....+..+...+.++..+...++.....+......|.++.+-.+
T Consensus       212 ~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~  263 (312)
T smart00787      212 KLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE  263 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444444444444444444444444333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=90.51  E-value=12  Score=38.73  Aligned_cols=68  Identities=25%  Similarity=0.350  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Q 002541          558 ELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALV  625 (910)
Q Consensus       558 ELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~  625 (910)
                      ++.+.+..+.....++..++.....+..++...+......++........+..+.........++..+
T Consensus        82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l  149 (191)
T PF04156_consen   82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIREL  149 (191)
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444555555555555555555555555555555555444444444444444444444444333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=90.49  E-value=64  Score=41.58  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 002541          776 VNKEIATRKEALKVAMEKAEKAK  798 (910)
Q Consensus       776 ~~~Eie~~k~aleeAleraE~Ae  798 (910)
                      ...++...+..++....+.+.+.
T Consensus       717 ~~~~l~~~~~~~~~~~~~~~~~~  739 (908)
T COG0419         717 LIEELESRKAELEELKKELEKLE  739 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555444

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.33  E-value=14  Score=36.43  Aligned_cols=10  Identities=30%  Similarity=0.444  Sum_probs=3.6

Q ss_pred             HHHHHHhcHH
Q 002541          670 EAEQAKAGAS  679 (910)
Q Consensus       670 EaE~aKaeI~  679 (910)
                      +.+.+++.|.
T Consensus        97 ~veEL~~Dv~  106 (120)
T PF12325_consen   97 EVEELRADVQ  106 (120)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=90.30  E-value=28  Score=37.03  Aligned_cols=77  Identities=30%  Similarity=0.308  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 002541          373 AQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISAS--------KEVEKTVEELTIELIATKES  444 (910)
Q Consensus       373 ~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aa--------k~~eekveeLt~EL~~lKEs  444 (910)
                      ..|..++.++...-.+|...+-|-+-|.+.|..+..+++.-..+-..+....        -.+++++..|...+..-...
T Consensus        86 ~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaq  165 (201)
T PF13851_consen   86 QSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQ  165 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555555555555555554444333332        24666666666666544444


Q ss_pred             HHHHH
Q 002541          445 LESAH  449 (910)
Q Consensus       445 Le~a~  449 (910)
                      |....
T Consensus       166 L~evl  170 (201)
T PF13851_consen  166 LNEVL  170 (201)
T ss_pred             HHHHH
Confidence            44433

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=90.04  E-value=33  Score=37.55  Aligned_cols=52  Identities=19%  Similarity=0.206  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Q 002541          574 NCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALV  625 (910)
Q Consensus       574 ~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~  625 (910)
                      ...+..+..+..++..+..++..++.+..........+.....++...-..+
T Consensus        41 ~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L   92 (264)
T PF06008_consen   41 NPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDL   92 (264)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444444444444444444444444444444443333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=89.95  E-value=17  Score=44.96  Aligned_cols=61  Identities=23%  Similarity=0.289  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHH
Q 002541          552 VASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLE  612 (910)
Q Consensus       552 L~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~  612 (910)
                      |-.+..+|..--..+-...+....+...+..|..+++....+|..+++++.+...--.+|.
T Consensus       137 lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rls  197 (916)
T KOG0249|consen  137 LPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLS  197 (916)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence            3344444444444444444444445555566666666666677666666665554444433

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.75  E-value=55  Score=39.63  Aligned_cols=69  Identities=22%  Similarity=0.301  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          385 AVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHL  453 (910)
Q Consensus       385 ~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~a~aa~~  453 (910)
                      +..+++-.+.|+..|..+|+.+..++-.|..---++......+.++.++|.+++..++-.++..+.+.-
T Consensus         6 aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~   74 (772)
T KOG0999|consen    6 AEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALG   74 (772)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666777888888888888877777666655555666667777777777777777776666665543

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=89.71  E-value=16  Score=39.98  Aligned_cols=118  Identities=18%  Similarity=0.226  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          586 ELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELH  665 (910)
Q Consensus       586 ELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~  665 (910)
                      .|.....+...++..+......+..|..++..+..+-..+..+..+       +....+.+..+......+-..+..++.
T Consensus        13 rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~e-------aee~~~rL~~~~~~~~eEk~~Le~e~~   85 (246)
T PF00769_consen   13 RLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQE-------AEEEKQRLEEEAEMQEEEKEQLEQELR   85 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH------------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444445555555555555544443333222       222333444444444444445566666


Q ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002541          666 KAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQ  710 (910)
Q Consensus       666 ~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~  710 (910)
                      .+..++..+..+....+......+.++..|+..+..+-.++..++
T Consensus        86 e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~  130 (246)
T PF00769_consen   86 EAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVM  130 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666667777777777777777777777776554

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF15294 Leu_zip: Leucine zipper

Probab=89.64  E-value=39  Score=37.78  Aligned_cols=125  Identities=16%  Similarity=0.234  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---------HhhhcchHHHHHHHHHHHH
Q 002541          582 SLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAR---------EKTVELPKQLQVAAQEADQ  652 (910)
Q Consensus       582 sLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeear---------e~~~eL~~eLqqls~EaEe  652 (910)
                      -|..|+..++.+...++.++...........++-..+...|..++.......         ..+.+|...+..++.+++.
T Consensus       129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek  208 (278)
T PF15294_consen  129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEK  208 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHH
Confidence            3667777777777777777777777777777777777777766665222211         2344566677777666554


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002541          653 AKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQ  710 (910)
Q Consensus       653 AKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~  710 (910)
                      +   +.+.......++...-.++.++-.....|..+.++++. |-.+.-|.-.|+.+.
T Consensus       209 ~---~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLek-KfqqT~ay~NMk~~l  262 (278)
T PF15294_consen  209 A---LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEK-KFQQTAAYRNMKEIL  262 (278)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHH-HhCccHHHHHhHHHH
Confidence            4   55555666666777777777777676677777777766 556666666666654

>PF13514 AAA_27: AAA domain

Probab=89.62  E-value=83  Score=41.54  Aligned_cols=38  Identities=18%  Similarity=0.329  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          369 VAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASL  406 (910)
Q Consensus       369 ~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l  406 (910)
                      ..+-..++.+..+...+-..+.....++..++.+++.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l  275 (1111)
T PF13514_consen  238 EDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDAL  275 (1111)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34556677777777777777777777777777776554

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.46  E-value=57  Score=39.46  Aligned_cols=318  Identities=23%  Similarity=0.256  Sum_probs=161.9

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hhhhhhhh
Q 002541          290 EQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEME-QGIADDAS  368 (910)
Q Consensus       290 e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELE-qgia~~~~  368 (910)
                      ..++..+-+++.........|-..=..++.+-...|...++|...++-+..+.++..++.--....-+..- -|+.... 
T Consensus        14 r~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~Ee-   92 (772)
T KOG0999|consen   14 RQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREE-   92 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHH-
Confidence            33444555555555444433333333567777777888888888888888887777766522222211110 0222211 


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          369 VAARAQLEVAKARH-VAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLES  447 (910)
Q Consensus       369 ~a~k~eLE~ar~q~-a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEsLe~  447 (910)
                       .+=.+ -++++.| -.-+.+|   ..||.++++++..+..+.+.-.+...+........+-.--.|..||-.+|.--..
T Consensus        93 -sLLqE-SaakE~~yl~kI~el---eneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~R  167 (772)
T KOG0999|consen   93 -SLLQE-SAAKEEYYLQKILEL---ENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREAR  167 (772)
T ss_pred             -HHHHH-HHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence             11111 2333333 3333333   3566666666666666666666655555555555555555566666666665555


Q ss_pred             HHHHHHHHHHHHHHHhhhh------hh--hhhHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHH---H
Q 002541          448 AHAAHLEAEEQRIGAAMAR------DQ--DSHLWEKELKQAEEELQKLTQQILSA--------KDLRSKLDTASAL---L  508 (910)
Q Consensus       448 a~aa~~eAEe~r~~v~la~------eq--d~~~~e~eL~qaEEEie~Lr~el~~a--------~dLeakLeea~~~---L  508 (910)
                      .-..+-+.|+.-+.  |++      .-  +-..+..+++-.+++++-|+.++.-+        +-|+..|+.+...   -
T Consensus       168 llseYSELEEENIs--LQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk  245 (772)
T KOG0999|consen  168 LLSEYSELEEENIS--LQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQK  245 (772)
T ss_pred             HHHHHHHHHHhcch--HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            55555555544222  221      10  11223345555566666666555433        2333333333211   2


Q ss_pred             HHHHHHHHHHHHh----hhhhhhccccCCCCCCchhhhh--------------hhhHH----HHHHHHHHHHHHHHHHHH
Q 002541          509 LDLKAELSAYMES----KLKEESNEEGHSNGELEEPERK--------------THTDI----QAAVASAKKELEEVKLNI  566 (910)
Q Consensus       509 e~Lk~ELa~~lE~----kL~e~~~ei~~lq~~L~E~ek~--------------~~~~l----~esL~sakkELee~K~~L  566 (910)
                      ..|++||..|+-.    .+.....   ++.+..-+....              ...++    +-.+..+..|+.  -..+
T Consensus       246 ~alkkEL~q~~n~e~~~~~n~l~~---sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~tel~~p~sDl~sel~--isei  320 (772)
T KOG0999|consen  246 NALKKELSQYRNAEDISSLNHLLF---SLDGKFGEDGAEPNNDPEEEHGALKKLASDLFTELQGPVSDLFSELN--ISEI  320 (772)
T ss_pred             HHHHHHHHHhcchhhhhhhhhhhe---ecccccccccCCCCCChhhhcchhhhccchhhhhccCchhHHHHHHH--HHHH
Confidence            4566677666542    1221111   111111110000              00111    111222333332  3446


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH
Q 002541          567 EKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRS  620 (910)
Q Consensus       567 eka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ks  620 (910)
                      ++.+.++.++......|-.-|......|+..+..+......+..|.+-++.+..
T Consensus       321 qkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~r  374 (772)
T KOG0999|consen  321 QKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALRR  374 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            677778888887777777778888888888877777777778888777766554

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=89.46  E-value=53  Score=39.02  Aligned_cols=32  Identities=19%  Similarity=0.105  Sum_probs=15.0

Q ss_pred             HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          669 EEAEQAKAGASTIESRLTAARKEIEAARASEK  700 (910)
Q Consensus       669 eEaE~aKaeI~taE~rL~aA~KElEAAKAsEa  700 (910)
                      .++..+..+.+..+.-+.....-++.++.++.
T Consensus       355 ~el~~L~Re~~~~~~~Y~~l~~r~eea~~~~~  386 (498)
T TIGR03007       355 AELTQLNRDYEVNKSNYEQLLTRRESAEVSKQ  386 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            33334444444444445555555555555443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=89.45  E-value=63  Score=39.90  Aligned_cols=18  Identities=33%  Similarity=0.562  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 002541          472 LWEKELKQAEEELQKLTQ  489 (910)
Q Consensus       472 ~~e~eL~qaEEEie~Lr~  489 (910)
                      .|+.--.-..+++..|+.
T Consensus       416 qWe~~R~pL~~e~r~lk~  433 (594)
T PF05667_consen  416 QWEKHRAPLIEEYRRLKE  433 (594)
T ss_pred             HHHHHHhHHHHHHHHHHH
Confidence            444444444444444443

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.41  E-value=5  Score=45.31  Aligned_cols=77  Identities=18%  Similarity=0.175  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002541          552 VASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKE  629 (910)
Q Consensus       552 L~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kake  629 (910)
                      +..+.+|.+.+..-|..... ..........+..+|..++.+-..+.+++..+..+...|..++..+..+...+...+
T Consensus        18 ~~~~~~E~~~Y~~fL~~l~~-~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE   94 (314)
T PF04111_consen   18 LEQAEKERDTYQEFLKKLEE-ESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEE   94 (314)
T ss_dssp             -------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444431 111122333444444444444444444444444444455555555555544444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=89.18  E-value=29  Score=35.73  Aligned_cols=116  Identities=21%  Similarity=0.294  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002541          551 AVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEK  630 (910)
Q Consensus       551 sL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakee  630 (910)
                      ....+++||++++..+..+..++..|.......|..|..+-.....      -....|....++...++.+|...+.++.
T Consensus        28 E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~------ysE~dik~AYe~A~~lQ~~L~~~re~E~  101 (159)
T PF05384_consen   28 EYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDR------YSEEDIKEAYEEAHELQVRLAMLREREK  101 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666666666666666666666655555555555444443322      2344567777777788888888877777


Q ss_pred             HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          631 EAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAE  672 (910)
Q Consensus       631 eare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE  672 (910)
                      ..+..-.+|...|..+..=++.|..-+..+.--+.=+.....
T Consensus       102 qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~  143 (159)
T PF05384_consen  102 QLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQ  143 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            666666666666666666666555544444333333333333

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=88.96  E-value=46  Score=37.71  Aligned_cols=96  Identities=17%  Similarity=0.177  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Q 002541          571 AEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEA  650 (910)
Q Consensus       571 eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~Ea  650 (910)
                      .++......+..|..+|.....+...-++......++|..|...+.....|-+.+..-...++..-..|..+|..+..-.
T Consensus       206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY  285 (306)
T PF04849_consen  206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY  285 (306)
T ss_pred             HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445555555666666666666555555555555555555555555544444443333333333444444444444


Q ss_pred             HHHHHHHHHHHHHHHH
Q 002541          651 DQAKSLAQAAGEELHK  666 (910)
Q Consensus       651 EeAKkeae~ae~EL~~  666 (910)
                      .+.-..+..++.++..
T Consensus       286 ~E~~~mL~EaQEElk~  301 (306)
T PF04849_consen  286 AECMAMLHEAQEELKT  301 (306)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444444433

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=88.85  E-value=32  Score=36.81  Aligned_cols=41  Identities=27%  Similarity=0.516  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 002541          773 LEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHE  816 (910)
Q Consensus       773 le~~~~Eie~~k~aleeAleraE~Ae~aK~avE~ELRkwR~e~e  816 (910)
                      +..+.++++..+++|..--.+.+.-   -...|.|=+.|..+-+
T Consensus       133 ~~~l~~e~erL~aeL~~er~~~e~q---~~~Fe~ER~~W~eEKe  173 (202)
T PF06818_consen  133 LGSLRREVERLRAELQRERQRREEQ---RSSFEQERRTWQEEKE  173 (202)
T ss_pred             chhHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHH
Confidence            4445566666666665554444422   2567788899988755

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=88.42  E-value=45  Score=36.94  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 002541          385 AVSELKSVKDEVESLRKDYAS  405 (910)
Q Consensus       385 ~laEL~svKeELekLrqEl~~  405 (910)
                      .+.+|.+-...|.++..++..
T Consensus         7 sl~el~~h~~~L~~~N~~L~~   27 (258)
T PF15397_consen    7 SLQELKKHEDFLTKLNKELIK   27 (258)
T ss_pred             HHHHHHHHHHHHHHhhHHHHH
Confidence            344555555555555554443

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=88.42  E-value=37  Score=35.97  Aligned_cols=63  Identities=17%  Similarity=0.222  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHH
Q 002541          556 KKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRT  618 (910)
Q Consensus       556 kkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~  618 (910)
                      ..||++++..+....++-.+|.+....+..|-..+-.++..+++.-.......+.+......+
T Consensus        66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL  128 (193)
T PF14662_consen   66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL  128 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence            444444444444444444444444444444444444444444333333333333333333333

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=88.11  E-value=64  Score=38.34  Aligned_cols=20  Identities=35%  Similarity=0.486  Sum_probs=17.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHH
Q 002541          470 SHLWEKELKQAEEELQKLTQ  489 (910)
Q Consensus       470 ~~~~e~eL~qaEEEie~Lr~  489 (910)
                      ++++++-|.+.++++++|.+
T Consensus       448 clEmdk~LskKeeeverLQ~  467 (527)
T PF15066_consen  448 CLEMDKTLSKKEEEVERLQQ  467 (527)
T ss_pred             HHHHHHHhhhhHHHHHHHHH
Confidence            67888999999999988766

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=86.80  E-value=46  Score=35.23  Aligned_cols=36  Identities=22%  Similarity=0.273  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002541          642 QLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAG  677 (910)
Q Consensus       642 eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKae  677 (910)
                      +|..-..-++.++..++.+...|...+.+++.+|..
T Consensus       138 el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~a  173 (188)
T PF05335_consen  138 ELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKA  173 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334445555555555555555555555555543

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=86.75  E-value=83  Score=38.13  Aligned_cols=124  Identities=17%  Similarity=0.252  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Q 002541          582 SLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAG  661 (910)
Q Consensus       582 sLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae  661 (910)
                      ....+|+.....+..+..........-+.|.+.++.....|..++.+..       +....|.++..+=-+|+.++.-++
T Consensus       351 ~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~-------~~~e~L~~LrkdEl~Are~l~~~~  423 (570)
T COG4477         351 KFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQE-------KVQEHLTSLRKDELEARENLERLK  423 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555444444444444444444444444444433322       233355555555556666666666


Q ss_pred             HHHHHHHHHHHHH----------------HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002541          662 EELHKAKEEAEQA----------------KAGASTIESRLTAARKEIEAARASEKLALAAIKALQES  712 (910)
Q Consensus       662 ~EL~~lkeEaE~a----------------KaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~e~  712 (910)
                      ..+..++.=++.-                ...+..+..+|...--.++++.+-=..|...|..|.+.
T Consensus       424 ~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~  490 (570)
T COG4477         424 SKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDE  490 (570)
T ss_pred             HHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            6666665444432                22344444444444444577777777777777777653

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=86.53  E-value=63  Score=36.60  Aligned_cols=64  Identities=22%  Similarity=0.317  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          381 RHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKES  444 (910)
Q Consensus       381 q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL~~lKEs  444 (910)
                      .+...+.-+..--+-|..|...|..+....-...+......+....+....+.+..|+..+...
T Consensus         9 ~l~q~l~~l~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~   72 (309)
T PF09728_consen    9 QLMQSLNKLSSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILA   72 (309)
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555556677778888888877766666655555555555555555555555443333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=85.93  E-value=51  Score=34.96  Aligned_cols=101  Identities=17%  Similarity=0.181  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 002541          592 SALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAA-GEELHKAKEE  670 (910)
Q Consensus       592 ~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~a-e~EL~~lkeE  670 (910)
                      ..|..+....+....-+....+|++.++..+-..+..+......+-+...+|..+..++..++.-..+. =.+..++...
T Consensus        47 kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~k  126 (194)
T PF15619_consen   47 KALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRK  126 (194)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Confidence            344444444555555566666666666666666665555555555555555655555555544433210 0112334444


Q ss_pred             HHHHHhcHHHHHHHHHHHHHHH
Q 002541          671 AEQAKAGASTIESRLTAARKEI  692 (910)
Q Consensus       671 aE~aKaeI~taE~rL~aA~KEl  692 (910)
                      ...+...+.+.+.++..+.+.+
T Consensus       127 L~~~~~~l~~~~~ki~~Lek~l  148 (194)
T PF15619_consen  127 LSQLEQKLQEKEKKIQELEKQL  148 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444

>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]

Probab=85.86  E-value=27  Score=39.09  Aligned_cols=77  Identities=25%  Similarity=0.329  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002541          562 VKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVE  638 (910)
Q Consensus       562 ~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~e  638 (910)
                      ....|++.......|...+++|-.+...+..+|..++++.+.++.-+.+-...|..+-.+++.++.+.++-...|++
T Consensus       257 it~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msD  333 (384)
T KOG0972|consen  257 ITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSD  333 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            34556677777788888889999999999999999999999999999999999999999999998887776666666

>PRK12472 hypothetical protein; Provisional

Probab=85.84  E-value=18  Score=43.11  Aligned_cols=93  Identities=26%  Similarity=0.288  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCccc
Q 002541          649 EADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPTGVT  728 (910)
Q Consensus       649 EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~e~~~~~~~~~~~~~~~It  728 (910)
                      -.++++..+.....++.-+......+......++.+|..+-+-+.+|+..++.+-+                        
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~a~~~l~~adk~l~~a~~d~~~~~a------------------------  260 (508)
T PRK12472        205 AADEAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKALAAAKTDEAKARA------------------------  260 (508)
T ss_pred             hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhH------------------------
Confidence            34445555555555555555555555555556666666666666665555544433                        


Q ss_pred             cchHhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002541          729 LSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNK  778 (910)
Q Consensus       729 ls~eEy~~L~~ka~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~  778 (910)
                                   .+....+..++..+..|++.|++....-+.-+..++.
T Consensus       261 -------------~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~  297 (508)
T PRK12472        261 -------------EERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKE  297 (508)
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                         2444556777788888888887765544443333333

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=84.88  E-value=1.1e+02  Score=38.08  Aligned_cols=50  Identities=26%  Similarity=0.307  Sum_probs=29.2

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          292 ELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTE  341 (910)
Q Consensus       292 EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e  341 (910)
                      +|..+......+.+.+...+..++.--.+|-.+++..+.|...|-+.+.+
T Consensus       163 ~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~  212 (739)
T PF07111_consen  163 ALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEE  212 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            35555555555666666666666666666666666666666665444443

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=84.88  E-value=57  Score=34.58  Aligned_cols=54  Identities=22%  Similarity=0.299  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          651 DQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALA  704 (910)
Q Consensus       651 EeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala  704 (910)
                      ..+...+...+..+..+....+.++..|..++.+|..++......++-...|-+
T Consensus        94 ~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a  147 (221)
T PF04012_consen   94 ADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKA  147 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555566666666666666777777777777666666555554444443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=84.69  E-value=45  Score=37.70  Aligned_cols=31  Identities=13%  Similarity=0.107  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          372 RAQLEVAKARHVAAVSELKSVKDEVESLRKD  402 (910)
Q Consensus       372 k~eLE~ar~q~a~~laEL~svKeELekLrqE  402 (910)
                      +.+++.++..|..+-.+|..++.++..++..
T Consensus       151 ~~~~~~a~~~~~~a~~~l~~a~~~~~~~~~~  181 (346)
T PRK10476        151 AQQVDQARTAQRDAEVSLNQALLQAQAAAAA  181 (346)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777777777777777776666655443

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=84.61  E-value=43  Score=36.70  Aligned_cols=45  Identities=13%  Similarity=0.248  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002541          561 EVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMAS  605 (910)
Q Consensus       561 e~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~  605 (910)
                      .++.....+..++......+..|..++.....+-..+..+...+.
T Consensus        16 q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eae   60 (246)
T PF00769_consen   16 QMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAE   60 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444444443333333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=84.55  E-value=55  Score=38.75  Aligned_cols=26  Identities=31%  Similarity=0.291  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          373 AQLEVAKARHVAAVSELKSVKDEVES  398 (910)
Q Consensus       373 ~eLE~ar~q~a~~laEL~svKeELek  398 (910)
                      ++|++.++.|...+.+.++.++++..
T Consensus       347 sqlen~k~~~e~~~~e~~~l~~~~~~  372 (493)
T KOG0804|consen  347 SQLENQKQYYELLITEADSLKQESSD  372 (493)
T ss_pred             HHHHhHHHHHHHHHHHHHhhhhhhhH
Confidence            46666666666665555555444433

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=84.25  E-value=19  Score=41.59  Aligned_cols=96  Identities=25%  Similarity=0.303  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH------HH
Q 002541          592 SALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEE------LH  665 (910)
Q Consensus       592 ~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~ae~E------L~  665 (910)
                      ..|+.+..++..+...+..+..+.+..+.+|..++.+-..+...+.++..+|.+++.++++.|.+.+..-..      |.
T Consensus       252 ~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv  331 (359)
T PF10498_consen  252 KTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLV  331 (359)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence            345666777788888888899999999999999998888888889999999999999999998887765333      56


Q ss_pred             HHHHHHHHHHhcHHHHHHHHHH
Q 002541          666 KAKEEAEQAKAGASTIESRLTA  687 (910)
Q Consensus       666 ~lkeEaE~aKaeI~taE~rL~a  687 (910)
                      +++.-+..+|.+|.+|..|+=.
T Consensus       332 ~IKqAl~kLk~EI~qMdvrIGV  353 (359)
T PF10498_consen  332 KIKQALTKLKQEIKQMDVRIGV  353 (359)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhe
Confidence            7788888888888888877643

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=84.10  E-value=62  Score=34.35  Aligned_cols=129  Identities=15%  Similarity=0.168  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002541          551 AVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGM-ASVAVASLEAELDRTRSEIALVQMKE  629 (910)
Q Consensus       551 sL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~-a~~eI~sL~eELer~ksELe~~kake  629 (910)
                      -+..-..|+..++..|...++....+...+.....+|-+.+..+..++.-... ...+.+.|..+|..+..+++....++
T Consensus        62 ll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki  141 (194)
T PF15619_consen   62 LLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKI  141 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666667777777777777777777777777777777777776553321 23335555555555555554444333


Q ss_pred             HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH
Q 002541          630 KEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIE  682 (910)
Q Consensus       630 eeare~~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE  682 (910)
                      .....   .+...-..+..++..-++....++.++..+..|+..+...|.+.+
T Consensus       142 ~~Lek---~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe  191 (194)
T PF15619_consen  142 QELEK---QLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE  191 (194)
T ss_pred             HHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22111   112222333444444444444455555555555555544444433

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=83.68  E-value=1.3e+02  Score=37.73  Aligned_cols=22  Identities=14%  Similarity=0.200  Sum_probs=15.3

Q ss_pred             cccccccchhhHHHhhhhccCc
Q 002541          883 KKKKKSLFPRLFMFLARRRSHA  904 (910)
Q Consensus       883 ~kkkk~~~P~~~~f~~rkk~~~  904 (910)
                      ..||+..--.+..||.+|++..
T Consensus       516 ~~~~~g~~ssi~r~f~kk~~~~  537 (916)
T KOG0249|consen  516 GPKKKGIKSSIGRLFGKKENGR  537 (916)
T ss_pred             CCCCCCchhHHHHHHhhhcccc
Confidence            3456666666899999987543

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=83.53  E-value=48  Score=32.65  Aligned_cols=43  Identities=12%  Similarity=0.169  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          554 SAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAA  596 (910)
Q Consensus       554 sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELee  596 (910)
                      .+...|......+...+.++..+...-+.|+.||-+.-.+.+.
T Consensus        20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~   62 (120)
T PF12325_consen   20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEE   62 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444445555555555545555555544444433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=83.49  E-value=65  Score=34.14  Aligned_cols=113  Identities=18%  Similarity=0.256  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHhhhh
Q 002541          287 KYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTE--EHQAKQDSELAKLRVEEMEQGIA  364 (910)
Q Consensus       287 ~~~e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e--~~~A~e~sE~ak~r~~ELEqgia  364 (910)
                      ..+..-|..+++.|.+++..+....+...++..+++.+.+.+..+..+.+.+...  ..-|+...    .+...+     
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al----~~k~~~-----   96 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREAL----QRKADL-----   96 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH----HHHHHH-----
Confidence            4566778888889999999999999999889988888888888888777666544  22222221    222222     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          365 DDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEKDIAVK  415 (910)
Q Consensus       365 ~~~~~a~k~eLE~ar~q~a~~laEL~svKeELekLrqEl~~l~eeK~~A~k  415 (910)
                             ..+++....+|..........+..|..++..|..+...+.....
T Consensus        97 -------e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a  140 (221)
T PF04012_consen   97 -------EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA  140 (221)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   22233333344444444555555555555555555555544333

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=83.48  E-value=16  Score=41.43  Aligned_cols=70  Identities=17%  Similarity=0.217  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002541          642 QLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQE  711 (910)
Q Consensus       642 eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~Ala~ikaL~e  711 (910)
                      +|..+..+-+++..++..++.+...+..+-...-.........+.....+....++.-..+...|..|..
T Consensus        65 eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k  134 (314)
T PF04111_consen   65 ELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK  134 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444444444444455555555555555555555555555555555555555555556666665553

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=83.29  E-value=59  Score=36.18  Aligned_cols=90  Identities=18%  Similarity=0.282  Sum_probs=46.9

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hhhhhhhh
Q 002541          290 EQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEME-QGIADDAS  368 (910)
Q Consensus       290 e~EL~~~qeeL~k~Keqle~aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELE-qgia~~~~  368 (910)
                      +.+|..++..+..++.++...+....+...++..++..++....+|..++.+       .    .|++.|- +|..    
T Consensus        79 ~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~-------~----~r~~~L~~~g~i----  143 (334)
T TIGR00998        79 ELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELD-------L----RRRVPLFKKGLI----  143 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------H----HHHHHHHHCCCc----
Confidence            3456665666666666665555555554444444444444333333332222       1    1222222 1322    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          369 VAARAQLEVAKARHVAAVSELKSVKDEV  396 (910)
Q Consensus       369 ~a~k~eLE~ar~q~a~~laEL~svKeEL  396 (910)
                        -+.+++.++..|..+..+|..++.+.
T Consensus       144 --s~~~~~~a~~~~~~a~~~l~~~~~~~  169 (334)
T TIGR00998       144 --SREELDHARKALLSAKAALNAAIQEQ  169 (334)
T ss_pred             --CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              35678888888877777777776653

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=83.24  E-value=68  Score=34.14  Aligned_cols=53  Identities=17%  Similarity=0.241  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002541          552 VASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMA  604 (910)
Q Consensus       552 L~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a  604 (910)
                      +.+++.++.+++.........+..+...-..|..-|.....+...++..+...
T Consensus        29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y   81 (201)
T PF13851_consen   29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY   81 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666666666666666666666666666666666666666555543

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=83.18  E-value=54  Score=33.82  Aligned_cols=51  Identities=20%  Similarity=0.318  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          549 QAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQ  599 (910)
Q Consensus       549 ~esL~sakkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKe  599 (910)
                      ...+..+..|+++....+.....++..++.....++..+...+..+..+..
T Consensus        87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~  137 (191)
T PF04156_consen   87 QQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDE  137 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444443333333333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=83.12  E-value=83  Score=35.10  Aligned_cols=80  Identities=25%  Similarity=0.292  Sum_probs=47.3

Q ss_pred             Cccc-HHHHHHhcCCccc-ccccccchH-HHhHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          258 PFES-VKEVVSKFGGIVD-WKAHRMQTV-ERRKYVEQELERSHEEMPE--YRKRSEAAEVAKNQVLKELDQTKRLVEELK  332 (910)
Q Consensus       258 Pf~S-VK~AvslFGe~~~-~K~~r~~~~-ER~~~~e~EL~~~qeeL~k--~Keqle~aE~~k~qal~ELe~aKr~ieeL~  332 (910)
                      -|.| |+.=+.++|.++- .+   ..++ =|.-.++. |-.+=++|..  .+.=...--.....++.+|+.++--+..|+
T Consensus        97 S~~silq~If~KHGDIAsNc~---lkS~~~RS~yLe~-Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR  172 (269)
T PF05278_consen   97 SQVSILQKIFEKHGDIASNCK---LKSQQFRSYYLEC-LCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLR  172 (269)
T ss_pred             hHHHHHHHHHHhCccHhhccc---cCcHHHHHHHHHH-HHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHH
Confidence            3555 8888899999862 11   1111 23333332 3233233322  122222223455678999999999999999


Q ss_pred             HHHHHHHHH
Q 002541          333 LNLERAQTE  341 (910)
Q Consensus       333 ~kLE~a~~e  341 (910)
                      .+|+.+...
T Consensus       173 ~~L~Ei~Ea  181 (269)
T PF05278_consen  173 SKLEEILEA  181 (269)
T ss_pred             HHHHHHHHH
Confidence            999987655

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=83.07  E-value=1.6e+02  Score=38.43  Aligned_cols=223  Identities=16%  Similarity=0.184  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Q 002541          580 ATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQA  659 (910)
Q Consensus       580 vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~EaEeAKkeae~  659 (910)
                      ++.|+..=+++..+|..+..+..    .+......+..+.+.|.-.+...+..+..+..+..+++...+++....-.+..
T Consensus       654 ~~~L~~~k~rl~eel~ei~~~~~----e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~  729 (1141)
T KOG0018|consen  654 VDQLKEKKERLLEELKEIQKRRK----EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISE  729 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHH
Confidence            35555555555555555544222    33333444444444444443333333444455667777777777776666667


Q ss_pred             HHHHHHHHHHHHHHHHhcHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH-----hhhhhhhcccCCCCCCCc
Q 002541          660 AGEELHKAKEEAEQAKAGASTIESRLTAA--------RKEIEAARASEKLALAAIKA-----LQESESAQRTDDVDSPTG  726 (910)
Q Consensus       660 ae~EL~~lkeEaE~aKaeI~taE~rL~aA--------~KElEAAKAsEa~Ala~ika-----L~e~~~~~~~~~~~~~~~  726 (910)
                      ...+++....++..+...+..++.++-.-        -.+|+..+-.+..|...+.-     ..+..-.  +..   ...
T Consensus       730 i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~--fe~---~~d  804 (1141)
T KOG0018|consen  730 IKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLD--FEK---QKD  804 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hee---ccc
Confidence            77777777777777777777777666321        45666655544444433321     1111110  111   111


Q ss_pred             cccchHhhHHHHHH---HHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 002541          727 VTLSLEEYYELSKR---AHEAEEQANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLG  803 (910)
Q Consensus       727 Itls~eEy~~L~~k---a~Eaee~a~kKVa~A~aQvEeAkese~~~l~Kle~~~~Eie~~k~aleeAleraE~Ae~aK~a  803 (910)
                      .   -..++...+.   .+..-+-..+...++..-+..+.+-+.....+.+....|+.+.+..+..+....--....-.+
T Consensus       805 ~---~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~  881 (1141)
T KOG0018|consen  805 T---QRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIEELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITS  881 (1141)
T ss_pred             H---HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            1   1223333332   333334445566666666666655555668899999999999999999999999999988899


Q ss_pred             HHHHHHHHHHH
Q 002541          804 IEQELRKWRAE  814 (910)
Q Consensus       804 vE~ELRkwR~e  814 (910)
                      +|..+-++..+
T Consensus       882 ~es~ie~~~~e  892 (1141)
T KOG0018|consen  882 IESKIERKESE  892 (1141)
T ss_pred             hhhHHHHHHHH
Confidence            99999988875

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=82.50  E-value=1.5e+02  Score=37.45  Aligned_cols=12  Identities=17%  Similarity=0.169  Sum_probs=5.6

Q ss_pred             cHHHHHHhcCCc
Q 002541          261 SVKEVVSKFGGI  272 (910)
Q Consensus       261 SVK~AvslFGe~  272 (910)
                      ++..++..|...
T Consensus       134 ~~~~~~~~l~~~  145 (754)
T TIGR01005       134 ADERVLKKMREK  145 (754)
T ss_pred             hHHHHHHHHHhc
Confidence            344455545444

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=82.25  E-value=77  Score=34.08  Aligned_cols=117  Identities=16%  Similarity=0.274  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002541          556 KKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREK  635 (910)
Q Consensus       556 kkELee~K~~Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~  635 (910)
                      ..++..+....+.+..+++++...|..|-...++.|..+.-++.++......+..+...+........+++.--      
T Consensus        68 ~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hA------  141 (207)
T PF05010_consen   68 EAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHA------  141 (207)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            33444444445556666777777777777888888888888888888887777777777777777766665422      


Q ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 002541          636 TVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEI  692 (910)
Q Consensus       636 ~~eL~~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KEl  692 (910)
                          ...|..+..++++.+...          ..+.-.+++.+...+.++..+...+
T Consensus       142 ----eekL~~ANeei~~v~~~~----------~~e~~aLqa~lkk~e~~~~SLe~~L  184 (207)
T PF05010_consen  142 ----EEKLEKANEEIAQVRSKH----------QAELLALQASLKKEEMKVQSLEESL  184 (207)
T ss_pred             ----HHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                235555555555554433          2344444445555555554444443

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=82.08  E-value=73  Score=33.74  Aligned_cols=62  Identities=26%  Similarity=0.322  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          641 KQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLA  702 (910)
Q Consensus       641 ~eLqqls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa~A  702 (910)
                      ..|+.+..-+..+...+...+.+|.+-..=++.++.-+..+...|..++.+|+..|.+-..|
T Consensus       116 ~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA  177 (188)
T PF05335_consen  116 AALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKA  177 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555566666666666666667777777777777777777777765554444

>TIGR00634 recN DNA repair protein RecN

Probab=81.77  E-value=1.3e+02  Score=36.57  Aligned_cols=25  Identities=0%  Similarity=-0.025  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          381 RHVAAVSELKSVKDEVESLRKDYAS  405 (910)
Q Consensus       381 q~a~~laEL~svKeELekLrqEl~~  405 (910)
                      +|..+..++...+.+|.+++.+...
T Consensus       162 ~~~~~~~~~~~~~~~L~~l~~~~~~  186 (563)
T TIGR00634       162 AYRELYQAWLKARQQLKDRQQKEQE  186 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            4555555555555555555444433

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells

Probab=81.64  E-value=88  Score=34.35  Aligned_cols=44  Identities=27%  Similarity=0.438  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          477 LKQAEEELQKLTQQILSA-KDLRSKLDTASALLLDLKAELSAYME  520 (910)
Q Consensus       477 L~qaEEEie~Lr~el~~a-~dLeakLeea~~~Le~Lk~ELa~~lE  520 (910)
                      |..+=.+|.+|..+|+.+ ..+..-|.+....|..|.+.|-.+++
T Consensus        16 LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~   60 (239)
T PF05276_consen   16 LNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIE   60 (239)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455544444433 33444445555555555555555544

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=81.47  E-value=54  Score=31.77  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=11.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          546 TDIQAAVASAKKELEEVKLNIEKA  569 (910)
Q Consensus       546 ~~l~esL~sakkELee~K~~Leka  569 (910)
                      .+++..|.++..+|+..|.....+
T Consensus        12 ~el~n~La~Le~slE~~K~S~~eL   35 (107)
T PF09304_consen   12 NELQNRLASLERSLEDEKTSQGEL   35 (107)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHH
Confidence            344445555555555555544443

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=81.34  E-value=1e+02  Score=35.26  Aligned_cols=128  Identities=12%  Similarity=0.124  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Q 002541          571 AEVNCLKVAATSLQSELEREKSALAAIRQREGMASV--AVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQ  648 (910)
Q Consensus       571 eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~--eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqqls~  648 (910)
                      .-..-++..+..++.+|......|...+.+.+...-  ....+...+..++.++..++.+....+....+-.-.+..+..
T Consensus       170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~  249 (362)
T TIGR01010       170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQA  249 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHH
Confidence            344445555555555555555555555554433221  122233334444444444444444444333343334455555


Q ss_pred             HHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 002541          649 EADQAKSLAQAAGEE--------LHKAKEEAEQAKAGASTIESRLTAARKEIEAARAS  698 (910)
Q Consensus       649 EaEeAKkeae~ae~E--------L~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAs  698 (910)
                      ++..++..+......        +.....+++.+..+.+.++..+..++.-++.++..
T Consensus       250 ~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~  307 (362)
T TIGR01010       250 RIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVE  307 (362)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555544433322        23334445555555555555555555555554433

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>PRK11281 hypothetical protein; Provisional

Probab=81.13  E-value=2e+02  Score=38.22  Aligned_cols=44  Identities=14%  Similarity=0.132  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          395 EVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIEL  438 (910)
Q Consensus       395 ELekLrqEl~~l~eeK~~A~k~AeEA~~aak~~eekveeLt~EL  438 (910)
                      +|+..+.++......-.....+-+.+.....++..+..+++..+
T Consensus       136 ~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L  179 (1113)
T PRK11281        136 QLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLL  179 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333334444444444444444433

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=80.99  E-value=65  Score=39.51  Aligned_cols=33  Identities=21%  Similarity=0.373  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 002541          657 AQAAGEELHKAKEEAEQAKAGASTIESRLTAAR  689 (910)
Q Consensus       657 ae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA~  689 (910)
                      +..++.++..|..++...+..++.++.+|..++
T Consensus       476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~  508 (652)
T COG2433         476 IRARDRRIERLEKELEEKKKRVEELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445555555555555555555555554

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=80.92  E-value=2.8  Score=47.47  Aligned_cols=123  Identities=15%  Similarity=0.202  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 002541          566 IEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQV  645 (910)
Q Consensus       566 Leka~eEl~sL~~~vesLrsELek~K~ELeelKeke~~a~~eI~sL~eELer~ksELe~~kakeeeare~~~eL~~eLqq  645 (910)
                      |..+.+++..|+..+.+|..-+..+...+..+.-.++.....+..+..+|..+...+..++.........+.+|...+..
T Consensus        30 Ls~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~  109 (326)
T PF04582_consen   30 LSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSD  109 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhh
Confidence            34444445555555555555555555555555555555555555555556555555555555555555555666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Q 002541          646 AAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAA  688 (910)
Q Consensus       646 ls~EaEeAKkeae~ae~EL~~lkeEaE~aKaeI~taE~rL~aA  688 (910)
                      ....+-.+......+...+.+++...-.....|..++.|+.++
T Consensus       110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~L  152 (326)
T PF04582_consen  110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKAL  152 (326)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHH
Confidence            6666666777777777777777777777777777777777654

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=80.46  E-value=21  Score=37.50  Aligned_cols=28  Identities=14%  Similarity=0.194  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 002541          664 LHKAKEEAEQAKAGASTIESRLTAARKE  691 (910)
Q Consensus       664 L~~lkeEaE~aKaeI~taE~rL~aA~KE  691 (910)
                      +..+..|+..+.....-++.++..++.|
T Consensus       146 ~e~l~DE~~~L~l~~~~~e~k~~~l~~E  173 (194)
T PF08614_consen  146 NEILQDELQALQLQLNMLEEKLRKLEEE  173 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=80.43  E-value=95  Score=39.22  Aligned_cols=91  Identities=21%  Similarity=0.234  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh------hhhhhhHHHHHHHHHHHHHHH
Q 002541          310 AEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQG------IADDASVAARAQLEVAKARHV  383 (910)
Q Consensus       310 aE~~k~qal~ELe~aKr~ieeL~~kLE~a~~e~~~A~e~sE~ak~r~~ELEqg------ia~~~~~a~k~eLE~ar~q~a  383 (910)
                      ....+.+-+.+|...+..++.|...-+++...-+.|.+.-+.-..|++.+=+.      .-......|+.||+.++.+..
T Consensus       570 Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~  649 (717)
T PF10168_consen  570 LKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQ  649 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444443333333333333333344333221      112334678888887777765


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 002541          384 AAVSELKSVKDEVESLR  400 (910)
Q Consensus       384 ~~laEL~svKeELekLr  400 (910)
                      ..-.-++.+|..+++.+
T Consensus       650 ~l~~si~~lk~k~~~Q~  666 (717)
T PF10168_consen  650 DLKASIEQLKKKLDYQQ  666 (717)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555555555555543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional

Probab=80.06  E-value=45  Score=39.53  Aligned_cols=36  Identities=8%  Similarity=0.114  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 002541          665 HKAKEEAEQAKAGASTIESRLTAARKEIEAARASEK  700 (910)
Q Consensus       665 ~~lkeEaE~aKaeI~taE~rL~aA~KElEAAKAsEa  700 (910)
                      ...-.+++.+..+..=++..+..++.-+|.||.-..
T Consensus       347 a~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~  382 (434)
T PRK15178        347 SESLSLFEDLRLQSEIAKARWESALQTLQQGKLQAL  382 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567777777777788888888888887765433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	910
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-15
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	7e-08
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-05
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	5e-06
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	2e-05
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	6e-04
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-05
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	2e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 84.5 bits (209), Expect = 1e-16
 Identities = 62/353 (17%), Positives = 136/353 (38%), Gaps = 33/353 (9%)

Query: 284  ERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEH 343
            E  +  ++  +++  E+ E  ++       KN + ++L     L  E +    R   ++ 
Sbjct: 864  EELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQ 923

Query: 344  QAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDY 403
            + ++     + R+EE E+            QL+  K +    + +L+   +E E+ R+  
Sbjct: 924  ELEEILHEMEARIEEEEE---------RSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974

Query: 404  ASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAA 463
                   D  +KK E+ I     +E    +LT E    +E +      +L  EE++    
Sbjct: 975  QLEKVTADGKIKKMEDDI---LIMEDQNNKLTKERKLLEERVSDL-TTNLAEEEEKAKNL 1030

Query: 464  MARDQDSHLWEKELKQAEEELQKLTQQILSAK-DLRSKLDTASALLLDLKAELSAYMESK 522
                        EL+   ++ +K  Q++   K  L  +       + +L+A+++  ++++
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE-LKAQ 1089

Query: 523  LKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATS 582
            L ++  E   +   LE+ E     +    +   +  + +++ ++E   A  N  +     
Sbjct: 1090 LAKKEEELQAALARLED-ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD 1148

Query: 583  LQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREK 635
            L  ELE  K+                  LE  LD T ++  L     K+  +K
Sbjct: 1149 LSEELEALKT-----------------ELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 78.3 bits (193), Expect = 7e-15
 Identities = 56/330 (16%), Positives = 133/330 (40%), Gaps = 9/330 (2%)

Query: 400  RKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQR 459
             ++  +   E     ++ ++A +  KE+E+   +L  E    +E L++    + EAEE R
Sbjct: 856  EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915

Query: 460  IGAAMARDQDSHLWEKE---LKQAEEELQKLTQQILSAK----DLRSKLDTASALLLDLK 512
            +  A  + +   +  +    +++ EE  Q+L  +    +    DL  +L+   A    L+
Sbjct: 916  VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975

Query: 513  AELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAE 572
             E     + K+K+  ++      +  +   K    ++  V+     L E +   +  T  
Sbjct: 976  LEKVT-ADGKIKKMEDDILIMEDQNNK-LTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033

Query: 573  VNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEA 632
             N  +   + L+  L++E+ +   + + +       + L  ++   +++IA ++ +  + 
Sbjct: 1034 KNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093

Query: 633  REKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEI 692
             E+      +L+    + + A    +     +   +E+ E  KA  +  E +     +E+
Sbjct: 1094 EEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153

Query: 693  EAARASEKLALAAIKALQESESAQRTDDVD 722
            EA +   +  L      QE   +   DD D
Sbjct: 1154 EALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 75.6 bits (186), Expect = 5e-14
 Identities = 56/319 (17%), Positives = 119/319 (37%), Gaps = 46/319 (14%)

Query: 274  DWKAHRMQTVERRKYVEQELERSHEEMP----EYRKRSEAAEVAKNQVLKELDQTKRLVE 329
            +  A   +   R    +QELE    EM     E  +RS+  +  K ++ +++   +  +E
Sbjct: 906  ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965

Query: 330  ELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSEL 389
            E +   ++ Q E+  A       K++  E +  I +D +     + ++ + R     + L
Sbjct: 966  EEEAARQKLQLEKVTADG-----KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL 1020

Query: 390  KSVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAH 449
               +++ ++L K      +       + ++   + +E+EK   +L  E     E +    
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080

Query: 450  AAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLL 509
            A   E + Q                  L + EEELQ    ++   +D  S+ + A   + 
Sbjct: 1081 AQIAELKAQ------------------LAKKEEELQAALARL---EDETSQKNNALKKIR 1119

Query: 510  DLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKA 569
            +L++ +     S L+E          +LE  E+      +       +ELE +K  +E  
Sbjct: 1120 ELESHI-----SDLQE----------DLES-EKAARNKAEKQKRDLSEELEALKTELEDT 1163

Query: 570  TAEVNCLKVAATSLQSELE 588
                   +    S   + +
Sbjct: 1164 LDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 60.6 bits (147), Expect = 2e-09
 Identities = 63/374 (16%), Positives = 140/374 (37%), Gaps = 37/374 (9%)

Query: 448  AHAAHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASAL 507
            +           +   +         E+E++  +EELQ+  ++   A+    +L+     
Sbjct: 830  SFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQ 889

Query: 508  LLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIE 567
            L + K  L   ++++ +  +  E     E+         +++  +   +  +EE +   +
Sbjct: 890  LCEEKNLLQEKLQAETELYAEAE-----EMRVRLAAKKQELEEILHEMEARIEEEEERSQ 944

Query: 568  KATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQM 627
            +  AE   ++     L+ +LE E++A   ++  +  A   +  +E ++     +   +  
Sbjct: 945  QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLT- 1003

Query: 628  KEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTA 687
            KE++  E+ V     L     E ++         + L K K + E   +       +   
Sbjct: 1004 KERKLLEERVS---DLTTNLAEEEEKA-------KNLTKLKNKHESMISELEVRLKKEEK 1053

Query: 688  ARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQ 747
            +R+E+E  +   KL         E ES+   + +         L+   +L+K+     E+
Sbjct: 1054 SRQELE--KIKRKL---------EGESSDLHEQIAELQAQIAELKA--QLAKK-----EE 1095

Query: 748  ANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQE 807
                 +A +      K + L+ +  LE    ++    E+ K A  KAEK K     + +E
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKR---DLSEE 1152

Query: 808  LRKWRAEHEQRRKA 821
            L   + E E     
Sbjct: 1153 LEALKTELEDTLDT 1166

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 55.2 bits (133), Expect = 8e-08
 Identities = 30/188 (15%), Positives = 77/188 (40%), Gaps = 5/188 (2%)

Query: 272  IVDWKAHRMQTVERRKYVEQELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEEL 331
            I+  +    +  + RK +E+ +      + E  ++++     KN+    + + +  +++ 
Sbjct: 992  ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE 1051

Query: 332  KLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKS 391
            + + +  +  + + + +S     ++ E++  IA+  +  A+ + E+  A      + L+ 
Sbjct: 1052 EKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAAL-----ARLED 1106

Query: 392  VKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAA 451
               +  +  K    L +      +  E   +A  + EK   +L+ EL A K  LE     
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDT 1166

Query: 452  HLEAEEQR 459
                +E R
Sbjct: 1167 TATQQELR 1174

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.9 bits (127), Expect = 4e-07
 Identities = 39/256 (15%), Positives = 90/256 (35%), Gaps = 10/256 (3%)

Query: 586  ELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQV 645
            E++ +   L   ++R+  A   +  LE +  +   E  L+Q K +   E   E  +    
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917

Query: 646  AAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARAS------E 699
             A +  + + +       + + +E ++Q +A    ++ ++    +++E   A+      E
Sbjct: 918  LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLE 977

Query: 700  KLALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQI 759
            K+         E +     D  +  T     LEE           EE+    +    ++ 
Sbjct: 978  KVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037

Query: 760  EVAKASELRSLERLEEVNKEIATRKEAL----KVAMEKAEKAKEGKLGIEQELRKWRAEH 815
            E   +     L++ E+  +E+   K  L        E+  + +     ++ +L K   E 
Sbjct: 1038 ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEEL 1097

Query: 816  EQRRKAGESGQGVNST 831
            +      E      + 
Sbjct: 1098 QAALARLEDETSQKNN 1113

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 81.1 bits (199), Expect = 1e-15
 Identities = 97/644 (15%), Positives = 185/644 (28%), Gaps = 179/644 (27%)

Query: 121 HVHTD---------NSDIPSVSSPQVHDSRDDQRIEPSDKLALPHTELASIAVRAPGTVD 171
           H H D           DI SV      D+ D + ++   K  L   E+  I + +   V 
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-IMSKDAVS 62

Query: 172 SPKHVLDS--PKP----------GDSPKY-VLNSPKHVLDSPKSGDSPKYVLNSPKHLVN 218
               +  +   K                Y  L SP        S  +  Y+    + L N
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR-LYN 121

Query: 219 SPKHVFGSPKQFGSPRYGISSPKLAKQGEMKRGLI-DTTAPF----------ESV----- 262
               VF         +Y +S  +   +  +++ L+    A            ++      
Sbjct: 122 DN-QVF--------AKYNVSRLQPYLK--LRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 263 ---KEVVSKFGGIVDW----KAHR-------MQTVERRKYVEQELERSHEEMPEYRKRSE 308
               +V  K    + W      +        +Q +  +  ++       +     + R  
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ--IDPNWTSRSDHSSNIKLRIH 228

Query: 309 AAEVAKNQVLKE---------LD--QTKRLVEELKLNLERAQTEEHQAKQDSELAKLRVE 357
           + +    ++LK          L   Q  +      L     +           L   R  
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL---SCKI----------LLTTR-- 273

Query: 358 EMEQGIADDASVAARAQLEVAKARHVAAVSELKSV-KDEVESLRKDYASLVTEKDIAVKK 416
                      V     L  A   H++      ++  DEV+SL   Y      +D+    
Sbjct: 274 --------FKQVTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLP--- 319

Query: 417 AEEAISASKEVEKTVEELTIELIAT----------------KESLESAHAAHLEAEEQRI 460
             E ++ +      + E   + +AT                + SL       LE  E R 
Sbjct: 320 -REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN-----VLEPAEYR- 372

Query: 461 GAAMARD-----QDSH--------LWEKELKQAEEE-LQKLTQQILSAKDLRSKLDTASA 506
              M          +H        +W   +K      + KL +  L  K  +    +  +
Sbjct: 373 --KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 507 LLLDLKAELS--AYMESKLKEESN-EEGHSNGELEEPERKTHTD-----------IQAAV 552
           + L+LK +L     +   + +  N  +   + +L  P    + D                
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP----YLDQYFYSHIGHHLKNIEH 486

Query: 553 ASAKKELEEVKLN---IEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVA 609
                    V L+   +E+     +    A+ S+ + L++ K     I   +      V 
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546

Query: 610 SLE-----AELDRTRSEIA-LVQ---MKEKEAREKTVELPKQLQ 644
           ++       E +   S+   L++   M E EA  +     KQ+Q
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH--KQVQ 588

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 73.2 bits (180), Expect = 3e-13
 Identities = 38/272 (13%), Positives = 89/272 (32%), Gaps = 25/272 (9%)

Query: 275  WKAHRMQTVERRKYVE-QELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKL 333
            +   +     R   +  Q L R +    +Y+      +    Q        +        
Sbjct: 829  YVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLK 888

Query: 334  NLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVK 393
             +   Q    +     EL KL++E           +    ++   + +      E KS+ 
Sbjct: 889  AIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLL 948

Query: 394  DEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHA--A 451
            +++ +L   Y++   +    V++   +   +K     V  L  E+   ++ L        
Sbjct: 949  EKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008

Query: 452  HLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDL 511
             +E    +              + E +Q   EL++          L+++ +  +  + D 
Sbjct: 1009 TIEEWADKY-------------KHETEQLVSELKEQNTL------LKTEKEELNRRIHDQ 1049

Query: 512  KAELSAYMESKLKEESNEEGHSNGELEEPERK 543
              E++  ME KL EE+ +      +L +   +
Sbjct: 1050 AKEITETMEKKLVEETKQ---LELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 70.9 bits (174), Expect = 1e-12
 Identities = 38/233 (16%), Positives = 87/233 (37%), Gaps = 10/233 (4%)

Query: 471  HLWEKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEE 530
                   +     +QK  +  L+       L     L    +  ++     KLK E+   
Sbjct: 857  KYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSV 916

Query: 531  GHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELERE 590
                       +K H  ++  +   +++++E     +    ++N L++  ++   +L  +
Sbjct: 917  ER--------YKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSD 968

Query: 591  KSALAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEA 650
               L    +    A+  V SL+ E+ + R E+   Q ++K   E   +   + +    E 
Sbjct: 969  VERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSEL 1028

Query: 651  DQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLAL 703
             +  +L +   EEL++   +  +      T+E +L    K++E     E+L  
Sbjct: 1029 KEQNTLLKTEKEELNRRIHDQAKEI--TETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 47/298 (15%), Positives = 92/298 (30%), Gaps = 52/298 (17%)

Query: 474  EKELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHS 533
             + ++ A   LQ L +  L     +  L    ++++              +         
Sbjct: 835  YQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRT-------- 886

Query: 534  NGELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSA 593
                     K    +Q        + E  KL IE  + E          L   LE +   
Sbjct: 887  --------LKAIVYLQCCYRRMMAKRELKKLKIEARSVE------RYKKLHIGLENKIMQ 932

Query: 594  LAAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQA 653
            L   +++       +     E      ++  +++      EK     ++L+++ +EA  A
Sbjct: 933  L---QRK-------IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNA 982

Query: 654  KSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESE 713
             +   +  EE+ K ++E  Q +    TIE      + E E   +  K     +K   E E
Sbjct: 983  TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK--TEKE 1040

Query: 714  SAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSLE 771
               R                   +  +A E  E    ++V    Q+E+    E    +
Sbjct: 1041 ELNR------------------RIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.6 bits (103), Expect = 4e-04
 Identities = 27/253 (10%), Positives = 78/253 (30%), Gaps = 17/253 (6%)

Query: 576  LKVAATSLQSELEREKSALAAIRQREGMASVAVASL------EAELDRTRSEIALVQMKE 629
            ++ AA ++Q  +   ++   A   R   A++ +                R     +Q   
Sbjct: 790  MRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQ-AL 848

Query: 630  KEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAAR 689
                    +    L+       Q       A    H+  +     +        R   A+
Sbjct: 849  LRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQC-----CYRRMMAK 903

Query: 690  KEIEAARASEKL--ALAAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQ 747
            +E++  +   +       +    E++  Q    +D         +   E           
Sbjct: 904  RELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDE---QNKEYKSLLEKMNNLEITYST 960

Query: 748  ANMRVVAAISQIEVAKASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQE 807
               ++ + + ++ +++     +  R+  + +EIA  ++ L     + +  +E     + E
Sbjct: 961  ETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020

Query: 808  LRKWRAEHEQRRK 820
              +  +E +++  
Sbjct: 1021 TEQLVSELKEQNT 1033

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.0 bits (99), Expect = 9e-04
 Identities = 45/352 (12%), Positives = 103/352 (29%), Gaps = 62/352 (17%)

Query: 475  KELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSN 534
              +++A   +Q+  +   +         T +A+++                +  +  +  
Sbjct: 788  MRMRRAAITIQRYVRGHQARCYATFLRRTRAAIII----------------QKFQRMYVV 831

Query: 535  GELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSAL 594
             +  +  R     +QA +       +   +  E  +  +        +        K+ +
Sbjct: 832  RKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIV 891

Query: 595  AAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAK 654
                    M +      + EL + + E   V+ + K+          QLQ    E ++  
Sbjct: 892  YLQCCYRRMMA------KRELKKLKIEARSVE-RYKKLHIGLENKIMQLQRKIDEQNKEY 944

Query: 655  SLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESES 714
                     L        +               R ++E  R SE+ A  A   +   + 
Sbjct: 945  KSLLEKMNNLEITYSTETE-------------KLRSDVERLRMSEEEAKNATNRVLSLQ- 990

Query: 715  AQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAKASELRSL-ERL 773
                             EE  +L K  H+ + +        I +       E   L   L
Sbjct: 991  -----------------EEIAKLRKELHQTQTEKK-----TIEEWADKYKHETEQLVSEL 1028

Query: 774  EEVNKEIATRKEAL--KVAMEKAEKAKEGKLGIEQELRKWRAEHEQRRKAGE 823
            +E N  + T KE L  ++  +  E  +  +  + +E ++   +    R   +
Sbjct: 1029 KEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 55.4 bits (134), Expect = 7e-08
 Identities = 27/234 (11%), Positives = 71/234 (30%), Gaps = 16/234 (6%)

Query: 586  ELEREKSALAAIR--QREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQL 643
            E      ++ +++                   + +  E     ++ K    K        
Sbjct: 790  ESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPA 849

Query: 644  QVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKEIEAARASEKLAL 703
             +   E D   S  + A +E  +A     + +   + +  +     K++E    ++ + L
Sbjct: 850  GLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYL 909

Query: 704  AAIKALQESESAQRTDDVDSPTGVTLSLEEYYELSKRAHEAEEQANMRVVAAISQIEVAK 763
             + +      + Q              L+            E Q+N  +++ ++Q+    
Sbjct: 910  GSNETGDSITAVQA------------KLKNLEAFDGECQSLEGQSNSDLLSILAQLTELN 957

Query: 764  ASELRSLERLEEVNKEIATRKEALKVAMEKAEKAKEGKLGIEQELRKWRAEHEQ 817
             + +   E  E  +   A +   +K + E  +     +L   Q++      H  
Sbjct: 958  YNGVP--ELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 24/219 (10%), Positives = 58/219 (26%), Gaps = 9/219 (4%)

Query: 475  KELKQAEEELQKLTQQILSAKDLRSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSN 534
            ++   + E +Q         K            + +L+A  ++        +        
Sbjct: 792  RDFGDSIESVQSFMNAHKEYKKTEKPPKGQ--EVSELEAIYNSLQTKLRLIKREPFVAPA 849

Query: 535  GELEEPERKTHTDIQAAVASAKKELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSAL 594
            G        T + ++ A     + L       +K    +         L++    +   L
Sbjct: 850  GLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYL 909

Query: 595  AAIRQREGMASVAVASLEAELDRTRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAK 654
             +    +     ++ +++A+L    +     Q  E ++    + +  QL           
Sbjct: 910  GSNETGD-----SITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPEL 964

Query: 655  --SLAQAAGEELHKAKEEAEQAKAGASTIESRLTAARKE 691
                     ++    K  AE  K        RL      
Sbjct: 965  TERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDL 1003

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 22/202 (10%), Positives = 59/202 (29%), Gaps = 21/202 (10%)

Query: 291  QELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSE 350
            + +  S +      KR      A     +       L +  + + E  + E  + K+   
Sbjct: 827  EAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKK--- 883

Query: 351  LAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEK 410
               + +++  + +    + A    + +       +++ +++    +E+   +  SL  + 
Sbjct: 884  -IAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQS 942

Query: 411  --DIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQ 468
              D+    A+        V +  E            ++S+   +                
Sbjct: 943  NSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLA---------- 992

Query: 469  DSHLWEKELKQAEEELQKLTQQ 490
                 E E  Q  E+L      
Sbjct: 993  -----ELERLQKIEDLHHHHHH 1009

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 49.7 bits (118), Expect = 5e-06
 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 155  PHTELASIAVRAPG-TVDSPKHVLDSPKPGDSPKYVLNSPKHVLDSPK-SGDSPKYVLNS 212
            P       +  +PG  + SP +   SP    SP Y+ +SP +   SP  S  SP Y   S
Sbjct: 1537 PGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTS 1596

Query: 213  PKHLVNSPKHVFGSPKQF-GSPRYGISSP 240
            P +   SP +   SP     SP Y  +SP
Sbjct: 1597 PSYSPTSPSYSATSPSYSPTSPSYSPTSP 1625

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 47.5 bits (112), Expect = 2e-05
 Identities = 32/220 (14%), Positives = 58/220 (26%), Gaps = 5/220 (2%)

Query: 498 RSKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKK 557
            +      +        L      +     N    S+ +++  E        A   S + 
Sbjct: 601 MAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQL 660

Query: 558 ELEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDR 617
            +E    + E A              +  LER+K      +     A   +  LEA    
Sbjct: 661 AIEITTNSQEAAAKHEAQRLEQEA--RGRLERQK---ILDQSEAEKARKELLELEAMSMA 715

Query: 618 TRSEIALVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAG 677
             S        E  A    +E    +  A  +A       +A  E + K +E        
Sbjct: 716 VESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARA 775

Query: 678 ASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQR 717
              +E         +EA +  E         +++   A  
Sbjct: 776 QLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGP 815

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 42.5 bits (99), Expect = 6e-04
 Identities = 34/267 (12%), Positives = 86/267 (32%), Gaps = 9/267 (3%)

Query: 499 SKLDTASALLLDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKE 558
           +KL +    + D    +++ +   +   + ++ H N            ++          
Sbjct: 559 AKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTL 618

Query: 559 LEEVKLNIEKATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRT 618
           L + +         +    V   S++   +R + AL    Q     +       A+ +  
Sbjct: 619 LPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQ 678

Query: 619 RSEIA---------LVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKE 669
           R E           ++   E E   K +   + + +A +    AK+ A++  E      E
Sbjct: 679 RLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGE 738

Query: 670 EAEQAKAGASTIESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDDVDSPTGVTL 729
            +       +   +  T A  E        +L  A  +   E   AQ+  +V++     +
Sbjct: 739 GSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEM 798

Query: 730 SLEEYYELSKRAHEAEEQANMRVVAAI 756
           +        +    A  +  ++++ ++
Sbjct: 799 TEALGPGTIRDLAVAGPEMQVKLLQSL 825

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 19/194 (9%), Positives = 65/194 (33%), Gaps = 17/194 (8%)

Query: 291 QELERSHEEMPEYRKRSEAAEVAKNQVLKELDQTKRLVEELKLNLERAQTEEHQAKQDSE 350
           + +  S +      KR      A     +       L +  + + E  + E  + K+   
Sbjct: 819 EAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKK--- 875

Query: 351 LAKLRVEEMEQGIADDASVAARAQLEVAKARHVAAVSELKSVKDEVESLRKDYASLVTEK 410
              + +++  + +    + A    + +       +++ +++    +E+   +  SL  + 
Sbjct: 876 -IAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQS 934

Query: 411 DIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHAAHLEAEEQRIGAAMARDQDS 470
           +       + +S   ++ +       EL   K++  +     +++  +     +  + + 
Sbjct: 935 N------SDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELER 988

Query: 471 HLWEKELKQAEEEL 484
                   Q  E+L
Sbjct: 989 L-------QKIEDL 995

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 44.1 bits (103), Expect = 2e-04
 Identities = 46/460 (10%), Positives = 123/460 (26%), Gaps = 39/460 (8%)

Query: 274 DWKAHRMQTVERRKYVEQELERSHEE--MPEYRKRSEAAEVAKNQVLKELDQTKRLVEEL 331
                + Q       ++ +L  S+    MP   K       A   + +     +  +   
Sbjct: 302 PKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNE 361

Query: 332 KLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADDASVAAR-AQLEVAKARHVAAVSELK 390
              LER      + +Q + + +   +  E  +       A  ++++    +H A  S+L 
Sbjct: 362 IRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLA 421

Query: 391 SVKDEVESLRKDYASLVTEKDIAVKKAEEAISASKEVEKTVEELTIELIATKESLESAHA 450
           + +D VE +      L                 S  V    +++  +        +    
Sbjct: 422 AHQDRVEQIAAIAQELNELD----------YYDSPSVNARCQKICDQWDNLGALTQK-RR 470

Query: 451 AHLEAEEQRIGAAMARDQDSHLWEKELKQAEEELQKL--TQQILSAKDLRSKLDTASALL 508
             LE  E+ +      +    L+ +  K+A      +    + L    +   ++    L 
Sbjct: 471 EALERTEKLL------ETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLT 524

Query: 509 LDLKAELSAYMESKLKEESNEEGHSNGELEEPERKTHTDIQAAVASAKKELEEVKLNIEK 568
              +           K    +       +     +    +Q    +         +  ++
Sbjct: 525 TAHEQ---------FKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQE 575

Query: 569 ATAEVNCLKVAATSLQSELEREKSALAAIRQREGMASVAVASLEAELDRTRSEIA----- 623
              +   ++         L  E +      +           +   +     EI      
Sbjct: 576 INGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIE 635

Query: 624 ---LVQMKEKEAREKTVELPKQLQVAAQEADQAKSLAQAAGEELHKAKEEAEQAKAGAST 680
               ++ +    R+    +        Q     + + +A   +        E  + G   
Sbjct: 636 MHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQ 695

Query: 681 IESRLTAARKEIEAARASEKLALAAIKALQESESAQRTDD 720
           + + +     E+E    +      + + + E  ++    D
Sbjct: 696 LLTTIARTINEVENQILTRDAKGISQEQMNEFRASFNHFD 735

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00