Citrus Sinensis ID: 002543

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910
MVEQKRKAAESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFEDENVLSDDEDDNNDIENNCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSSSDDSSDEDDVDENSAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQEYESSLKKLEGTGGEENLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGTNNDVQKNVKTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKMKSGNDVDANNEKSMKVVEPALNDQGLEETAREVDEESETDSEGQMVDGILSSAPKASYKLPSQEELIRLAFAGDDVEEDFEEDKEKVLNEENPVPEKPNLIPGWGQWTDVQRKKGVPSWMLDEHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQSIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKFEEVNPHEKTEDHKGSGKKHKNSRNKGNSGKRTGTRPVVVKS
cHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHccccccccccccccHHHcccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccEEEccccHHHHHHHcccccccccccHHHHHHHHccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cHHHHHHHHHcccccccccccccccHHcccccccccHcHccccccccHHHHHHHHHccccccccccccccccccccEEEHcccccHHHHcccccccccHHcHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHccccccccccccccccccHccccccccccccccEEHHHHHcccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEcccccccccccHHHHHcccccccHHHHHHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHccccccEEcccccHHcccccccccHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHcccHHHcccccccccccHHHHHHHcHHHcccccHHcHHHccccccccccccccccccccccccccccccccHcccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccEcccccccccccccccccccccHHHHHcccEEEEccccHHHcHHcccccEEEEccHcHHHHHHHHcccccccccHHHHHHHccccccccccHHHHHHHHccccEEEcccEEEccccccccccccccccccccccccccccccccccccccccEEEEEc
MVEQKRkaaesadstkhkmkhskkpkrqskkldgggekkkrkgprlpnslRKEIDRlntnslngsdedigsdeardfyeyeeplpqeesrknrrfdpvenyeyelpekfedenvlsddeddnndienncgrrgiskqvgdefqdgdndERHLRMLqgvtgmpseffegkkkkkNVVIseaypesefnptrdvldgngqisiddlleplqgksgySKLRKRMHQMRKkstsvlaplpkpeqeklERKVVYEQSKkditkweplvkmnreapsiyfdedtnlgfstvgaiaagfeprTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKsmkdssssddssdeddvdensagsdqdRASKLYATAKEKTLKVlaeddevpesgvlslPFMVRGMKKRKEEAIQEANAALQEYESSLKKLegtggeenlkegaasgrrvfgpvkrevlvpskkietdnyygnsdsegdleaeanmdagngtnndvqknvktdsftlhvdheshpdsvfksfedvvrdpgpktsydVAIFASgtwkkmksgndvdannekSMKVVEpalndqgleetarevdeesetdsegqmvdgilssapkasyklpsQEELIRLAFAGDDVEEDFEEDKEKvlneenpvpekpnlipgwgqwtdvqrkkgvpswmldeHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLhtktlpypftskevfeqsirvpvgpefnpatavgaltrpdvkkksgiiikpikfeevnphektedhkgsgkkhknsrnkgnsgkrtgtrpvvvks
mveqkrkaaesadstkhkmkhskkpkrqskkldgggekkkrkgprlpnslrkeidrlntnslngsdedigsdeaRDFYEyeeplpqeesrknrrfdpvENYEyelpekfedenvlsddeddnndienncgrrgiskqvgdefqdgdnDERHLRMLQGvtgmpseffegkkkKKNVVISEaypesefnptrdvlDGNGQISiddlleplqgksGYSKLRKRMHQMrkkstsvlaplpkpeqeklerkvvyeqskkditkweplvkmNREAPSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKeahkqdgskllelnkISVEDYLEERNHVAKMrsllfrhemkrkrikkiksktyhrllkkdrlkaasVEMLMDPEAAKEEARKQEFkraeermtlkhknssrwaKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSmkdssssddssdeddvdensagsdqdrasKLYATAKEKTlkvlaeddevpesgvlslpfmVRGMKKRKEEAIQEANAALQEYESSLKKLEGTGGEENLkegaasgrrvfgpvkrevlvpskkietdnyygnsDSEGDLEAEANMDAGNGTNNDVQKNVKTDSFTLHVDheshpdsvfksfedVVRDPGPKTSYDVAIFasgtwkkmksgNDVDANNEKSMKvvepalndqgleetarevdeesetdsegqmvDGILSSAPKASYKLPSQEELIRLAFAGDDVEEDFEEDKEkvlneenpvpekpnlipgwgqwtdvQRKKGVPSWMLDEHENAKKMREEALKkrkdahlkhviisekldkkaeklhtktlpypftskEVFEQSIRVPVGPEFNPATavgaltrpdvkkksgiiikpikfeevnphektedhkgsgkkhknsrnkgnsgkrtgtrpvvvks
MVEQKRKAAESADSTkhkmkhskkpkrqskkldgggekkkrkgPRLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFedenvlsddeddnndiennCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMkrkrikkikskTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKdssssddssdeddvdensAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQEYESSLKKLEGTGGEENLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGTNNDVQKNVKTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKMKSGNDVDANNEKSMKVVEPALNDQGLEETAREVDEESETDSEGQMVDGILSSAPKASYKLPSQEELIRLAFAGddveedfeedkekvLNEENPVPEKPNLIPGWGQWTDVQRKKGVPSWMLDEHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQSIRVPVGPEFNPATAVGALTRPDVkkksgiiikpikFEEVNPHEKTEDHKGSGKKHKNSRNKGNSGKRTGTRPVVVKS
***************************************************************************************************************************************************************************************************************************************************************ITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFE*******************************LNKISVEDYLEERNHVAKMRSLLFRHE*****I**I***TYHRL*********************************************************************************************************************************************************************************************************************************************************************************SYDVAIFASGTW***********************************************************************L******************************LIPGWGQWTDVQRK******************************KHVIIS*********LHTKTLPYPFTSKEVFEQSIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKF*****************************************
************************************************************************************************************************************************************************************************************************************************************KKDITKWEPLV***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IRLAFAGDDVEEDF**********************GWGQWTD************************************VIISEKLDKKAEKLHTKTLPYPFTSKEVFEQSIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPI*******************************************
********************************************RLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFEDENVLSDDEDDNNDIENNCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYS**************SVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPE************RAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTR******************************RASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQEYESSLKKLEGTGGEENLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGTNNDVQKNVKTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKMKSGNDVDANNEKSMKVVEPALNDQ********************MVDGILSSAPKASYKLPSQEELIRLAFAGDDV***********LNEENPVPEKPNLIPGWGQWTDVQRKKGVPSWMLDEHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQSIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKFEEVN*************************************
********************************************RLPNSLRKEIDRLN**************EARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEK*************************************************VTGMP***********************************QISIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLT*********************************SK*Y*T******************************************AALQEYESSL********************************************************************************************************************************************************************************SYKLPSQEELIRLAFAGDDVEEDFEEDKEKVLNEENPVPEKPNLIPGWGQWTDVQRKKGVPSWMLDEHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQSIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKFE****************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
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MVEQKRKAAESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFEDENVLSDDEDDNNDIENNCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSSSDDSSDEDDVDENSAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGEENLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGTNNDVQKNVKTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKMKSGNDVDANNEKSMKVVEPALNDQGLEETAREVDEESETDSEGQMVDGILSSAPKASYKLPSQEELIRLAFAGDDVEEDFEEDKEKVLNEENPVPEKPNLIPGWGQWTDVQRKKGVPSWMLDEHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQSIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKFEEVNPHEKTEDHKGSGKKHKNSRNKGNSGKRTGTRPVVVKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query910 2.2.26 [Sep-21-2011]
P87137929 Uncharacterized protein C yes no 0.350 0.343 0.341 6e-34
Q3T0Q8770 U3 small nucleolar RNA-as yes no 0.324 0.383 0.317 2e-26
Q5TAP6766 U3 small nucleolar RNA-as yes no 0.154 0.184 0.418 8e-20
Q04500899 U3 small nucleolar RNA-as yes no 0.159 0.161 0.333 8e-19
Q640M1767 U3 small nucleolar RNA-as yes no 0.157 0.186 0.387 1e-18
Q6EJB6756 U3 small nucleolar RNA-as no no 0.175 0.211 0.371 3e-18
Q9BVJ6771 U3 small nucleolar RNA-as no no 0.169 0.199 0.377 4e-18
>sp|P87137|YDM6_SCHPO Uncharacterized protein C57A7.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC57A7.06 PE=1 SV=1 Back     alignment and function desciption
 Score =  146 bits (369), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 121/354 (34%), Positives = 191/354 (53%), Gaps = 35/354 (9%)

Query: 233 APLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFD-EDTNLGFSTVGAIAAG 291
           APL K  Q++LER+  YEQ+K D+ KW+P+V  NR++  + F   +T     +   +A+ 
Sbjct: 325 APLAKSIQDRLERQAAYEQTKNDLEKWKPIVADNRKSDQLIFPMNETARPVPSNNGLASS 384

Query: 292 FEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHE 351
           FEPRTE E+KM   + D  ++        + L LNK+SVE+  E    +  MR L+FR E
Sbjct: 385 FEPRTESERKMHQALLDAGLENESALKKQEELALNKLSVEEVAERTRQLRFMRELMFREE 444

Query: 352 MKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKE---EARKQEFKRAEERMTLKH 408
            K KR+ KIKSKTY ++ K  + K    EM + P++ ++   E  K E  RA ERMT +H
Sbjct: 445 RKAKRVAKIKSKTYRKIRKNRKEK----EMALIPKSEEDLENERIKSEEARALERMTQRH 500

Query: 409 KNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSSSDDSSDEDDVDE 468
           KN+S W +++L+R   +  EGTR A+ EQ+++   L +++   + S       D +DV E
Sbjct: 501 KNTSSWTRKMLERA--SHGEGTREAVNEQIRKGDELMQRIHGKEIS-----EMDGEDVSE 553

Query: 469 NSAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAA 528
            S  SD D   ++ +TA EK    +  ++E    GVL + FM R    R++  +Q+    
Sbjct: 554 FS-DSDYDTNEQV-STAFEK----IRNEEEPKLKGVLGMKFM-RDASNRQKALVQD---E 603

Query: 529 LQEYESSLKKL--------EGTGGEENLKEGAASGRRVFGPVKR--EVLVPSKK 572
           +Q +E  L  +        +G  G   +  G  +GRR F P +   ++ +PS+K
Sbjct: 604 MQAFEDELAGVPNEDDTSQKGEDGVPGVLIGNNTGRRSFKPSEEAAKLSLPSRK 657

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q3T0Q8|UT14A_BOVIN U3 small nucleolar RNA-associated protein 14 homolog A OS=Bos taurus GN=UTP14A PE=2 SV=1 Back     alignment and function description
>sp|Q5TAP6|UT14C_HUMAN U3 small nucleolar RNA-associated protein 14 homolog C OS=Homo sapiens GN=UTP14C PE=2 SV=1 Back     alignment and function description
>sp|Q04500|UTP14_YEAST U3 small nucleolar RNA-associated protein 14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP14 PE=1 SV=1 Back     alignment and function description
>sp|Q640M1|UT14A_MOUSE U3 small nucleolar RNA-associated protein 14 homolog A OS=Mus musculus GN=Utp14a PE=2 SV=1 Back     alignment and function description
>sp|Q6EJB6|UT14B_MOUSE U3 small nucleolar RNA-associated protein 14 homolog B OS=Mus musculus GN=Utp14b PE=1 SV=2 Back     alignment and function description
>sp|Q9BVJ6|UT14A_HUMAN U3 small nucleolar RNA-associated protein 14 homolog A OS=Homo sapiens GN=UTP14A PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query910
225437402895 PREDICTED: uncharacterized protein C57A7 0.963 0.979 0.670 0.0
255564196900 U3 small nucleolar RNA-associated protei 0.974 0.985 0.637 0.0
147791054 1529 hypothetical protein VITISV_003625 [Viti 0.821 0.489 0.632 0.0
356503904887 PREDICTED: U3 small nucleolar RNA-associ 0.957 0.981 0.592 0.0
356570968883 PREDICTED: U3 small nucleolar RNA-associ 0.956 0.985 0.590 0.0
449436485904 PREDICTED: U3 small nucleolar RNA-associ 0.973 0.980 0.587 0.0
357511257890 U3 small nucleolar RNA-associated protei 0.957 0.978 0.552 0.0
145339926855 U3 ribonucleoprotein-like protein [Arabi 0.905 0.963 0.559 0.0
110740279855 hypothetical protein [Arabidopsis thalia 0.905 0.963 0.558 0.0
3193300870 T14P8.20 [Arabidopsis thaliana] gi|72690 0.905 0.947 0.550 0.0
>gi|225437402|ref|XP_002268231.1| PREDICTED: uncharacterized protein C57A7.06 [Vitis vinifera] gi|297743903|emb|CBI36873.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1124 bits (2908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/907 (67%), Positives = 721/907 (79%), Gaps = 30/907 (3%)

Query: 1   MVEQKRKAAE-SADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNT 59
           M E+KRK+ E S      K + + KPK            KKR GPRLP+ LRKE+D +N 
Sbjct: 1   MAEKKRKSKEESGGGRLQKKRKNSKPKTL----------KKRTGPRLPSKLRKELDLVNP 50

Query: 60  NSL-NGSDEDIGSDE----ARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFEDENV 114
           N L  G DE+I SDE    A + YEYEE   +EES+KNRRFD VEN+EYELPE F+DEN+
Sbjct: 51  NPLKGGGDEEINSDEGELLANNLYEYEEAAAEEESKKNRRFDSVENFEYELPEDFKDENI 110

Query: 115 LSDDEDDNNDIENNCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKN 174
            SDD+D   + E N  R   S  +GDE ++ D D RH+RMLQG+TGMPSE FEGKK+K N
Sbjct: 111 ASDDDDIEGEDEEN-NRSENSSHLGDEVEEED-DGRHMRMLQGITGMPSEAFEGKKRKNN 168

Query: 175 VVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAP 234
           VV+SEAYPESE+NP+RDVL+GNG+ISI DLL+PL GKSGYSKLRKRMHQ+ +KS SV AP
Sbjct: 169 VVVSEAYPESEYNPSRDVLEGNGRISIQDLLDPLHGKSGYSKLRKRMHQVERKSMSVHAP 228

Query: 235 LPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFEP 294
           LPK ++EKLERKV YEQSKKDITKWEPLVK NREAP++YFDED +LGFSTVGAIA+ FEP
Sbjct: 229 LPKADREKLERKVAYEQSKKDITKWEPLVKKNREAPTVYFDEDVDLGFSTVGAIASEFEP 288

Query: 295 RTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKR 354
           RT+FEKK+ASLV+DDKV EAH+QDGS+LLELNKISVED  E  N +AKMRSLLF HEMK 
Sbjct: 289 RTDFEKKIASLVHDDKVLEAHRQDGSRLLELNKISVEDVKERHNRIAKMRSLLFNHEMKA 348

Query: 355 KRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRW 414
           KRIKKIKSKTYHRLLKKDRLK AS E+ MDPEAAKE A KQEFKRAEER+TLKHKNSS+W
Sbjct: 349 KRIKKIKSKTYHRLLKKDRLKTASAEIQMDPEAAKELAMKQEFKRAEERLTLKHKNSSKW 408

Query: 415 AKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSSSDDSSDEDDVDENSAGSD 474
           AKRILKRGLD QDEGTRAAITEQL QHALLTRKM SMKD+SS + S ++D  DENSAGSD
Sbjct: 409 AKRILKRGLDVQDEGTRAAITEQLHQHALLTRKMHSMKDTSSDESSDEDDF-DENSAGSD 467

Query: 475 QDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQEYES 534
           +D ASKL A AKEKTL+VL E+D++P+SGVLSLPFMVRG+KKRKE A +E   A+ E+E+
Sbjct: 468 EDGASKLLAKAKEKTLEVLEEEDKIPDSGVLSLPFMVRGLKKRKEAAYEEGKLAINEFEA 527

Query: 535 SLKKLEGTGGEENLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANM 594
           SLK++E  GG ENLKE A+SGRRVFG VK+++   S K   D +Y NSDSE + + + N+
Sbjct: 528 SLKQMELGGGAENLKETASSGRRVFGTVKKQIQEFSNK---DAHYNNSDSEDEFKVKENI 584

Query: 595 DAGNGTNNDVQKNVKTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWK 654
           +A N  NN++ K+V  D+  L  + E   D +FKSF D+VRDPGPKT+Y+VA+FASG+WK
Sbjct: 585 EAANDQNNNLPKHVDIDAGLLREESEIGQDPIFKSFNDIVRDPGPKTTYEVAMFASGSWK 644

Query: 655 KMKSGNDVDANNEKSMKVVEPALN--DQGLEETAREVDEESETDSEGQMVDGILSSAPKA 712
           KMKS N+ + N  K  K VEP  +  DQG      EV  +S+TD EGQMVDG LSS  KA
Sbjct: 645 KMKSENEANGNIIKPPKSVEPPRHNKDQG------EVGGDSDTDDEGQMVDGTLSSGMKA 698

Query: 713 SYKLPSQEELIRLAFAGDDVEEDFEEDKEKVLNEENPVPEKPNLIPGWGQWTDVQRKKGV 772
           +Y+LPSQ ELIR AFAGDDVEEDFE+DK+++L  ENP PEKP L+PGWGQWT VQ+KKG+
Sbjct: 699 TYELPSQAELIRRAFAGDDVEEDFEKDKDEILKGENPEPEKPVLLPGWGQWTHVQQKKGL 758

Query: 773 PSWMLDEHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQ 832
           PSWML+EHE AKK REEALKKRKDAHLKHVI+SEKLDKKAEKLHTKTLP+P+TSKEVFEQ
Sbjct: 759 PSWMLEEHEIAKKKREEALKKRKDAHLKHVIVSEKLDKKAEKLHTKTLPFPYTSKEVFEQ 818

Query: 833 SIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKFEEVNPHEKTEDHKGSGKKHKNSR 892
           SIR+P+GPEFNPA  +GAL RP+V KK+G+IIKPIK+++VNPHE  E+H   GKK    +
Sbjct: 819 SIRMPIGPEFNPAVVLGALNRPEVVKKAGVIIKPIKYKDVNPHEGVEEHGQGGKKQNTKK 878

Query: 893 NKGNSGK 899
           +KG  GK
Sbjct: 879 SKGMGGK 885

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255564196|ref|XP_002523095.1| U3 small nucleolar RNA-associated protein, putative [Ricinus communis] gi|223537657|gb|EEF39280.1| U3 small nucleolar RNA-associated protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147791054|emb|CAN68024.1| hypothetical protein VITISV_003625 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356503904|ref|XP_003520740.1| PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog B-like [Glycine max] Back     alignment and taxonomy information
>gi|356570968|ref|XP_003553654.1| PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog A-like [Glycine max] Back     alignment and taxonomy information
>gi|449436485|ref|XP_004136023.1| PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog C-like [Cucumis sativus] gi|449498517|ref|XP_004160559.1| PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog C-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357511257|ref|XP_003625917.1| U3 small nucleolar RNA-associated protein-like protein [Medicago truncatula] gi|355500932|gb|AES82135.1| U3 small nucleolar RNA-associated protein-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|145339926|ref|NP_567232.3| U3 ribonucleoprotein-like protein [Arabidopsis thaliana] gi|332656764|gb|AEE82164.1| U3 ribonucleoprotein-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110740279|dbj|BAF02036.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|3193300|gb|AAC19284.1| T14P8.20 [Arabidopsis thaliana] gi|7269000|emb|CAB80733.1| AT4g02400 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query910
TAIR|locus:2133293855 AT4G02400 "AT4G02400" [Arabido 0.582 0.619 0.533 7.1e-226
SGD|S000004558899 UTP14 "Subunit of U3-containin 0.741 0.750 0.242 2e-43
MGI|MGI:1919804767 Utp14a "UTP14, U3 small nucleo 0.474 0.563 0.261 3.3e-40
UNIPROTKB|F1RTH6773 LOC100523416 "Uncharacterized 0.332 0.391 0.293 4.3e-40
UNIPROTKB|Q3T0Q8770 UTP14A "U3 small nucleolar RNA 0.324 0.383 0.298 1.9e-38
UNIPROTKB|Q5TAP6766 UTP14C "U3 small nucleolar RNA 0.323 0.383 0.276 1.2e-37
UNIPROTKB|A6QLB4770 UTP14A "U3 small nucleolar RNA 0.324 0.383 0.301 9e-36
ASPGD|ASPL0000053495955 AN0475 [Emericella nidulans (t 0.732 0.698 0.25 1.9e-35
DICTYBASE|DDB_G0279371987 utp14 "U3 snoRNP protein" [Dic 0.392 0.361 0.265 1.5e-33
POMBASE|SPAC57A7.06929 SPAC57A7.06 "U3 snoRNP protein 0.561 0.550 0.276 1.6e-32
TAIR|locus:2133293 AT4G02400 "AT4G02400" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1386 (493.0 bits), Expect = 7.1e-226, Sum P(2) = 7.1e-226
 Identities = 298/559 (53%), Positives = 383/559 (68%)

Query:    44 PRLPNSLRKEI--DRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENY 101
             P LPNS+ K I  ++   NS    DE    DE  D YEYEE +P+EES+KN R+D V+NY
Sbjct:    21 PHLPNSILKTIANEKRPLNSDEDDDEIDSDDENVDLYEYEEGVPEEESKKNNRYDRVDNY 80

Query:   102 EYELPEKFXXXXXXXXXXXXXXXXXXXCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGM 161
             +YELPE F                       G S+   +E  +GD D+RH RMLQG+TGM
Sbjct:    81 DYELPEDFEDENVESDDDEDG----------GNSE---NEEGEGD-DDRHTRMLQGLTGM 126

Query:   162 PSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRM 221
             PS  F+ + KK+ V+ +EAYPESEFNPTRDVL+G G IS++DLL PL+GK G++ L KR+
Sbjct:   127 PSAAFQEESKKRPVLYTEAYPESEFNPTRDVLEGKGLISVEDLLAPLEGKPGFNDLNKRI 186

Query:   222 HQMRKKSTSVL-APLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNL 280
             ++M+K + SV+ APLPKPE+E+LERK V    +KD  KW  LVK NREAP++YF++  N+
Sbjct:   187 NRMQKDTQSVVHAPLPKPERERLERKAVKGLVEKDFNKWVHLVKRNREAPTVYFNQPVNV 246

Query:   281 GFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHV 340
             G+STVGAIA+ F+PRTEFEKKMAS++ D+++ EAHK+DG+KLLELN++S+ED+++ R+H+
Sbjct:   247 GYSTVGAIASEFQPRTEFEKKMASVLKDNELGEAHKEDGAKLLELNEVSMEDHIKYRDHI 306

Query:   341 AKMRSLLFRHEMXXXXXXXXXXXTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRA 400
             AKMRSLLFRHE+           TYHRL  KD LK +++  LMDPE AKEEA KQE +R 
Sbjct:   307 AKMRSLLFRHELKSKRIKKIKSKTYHRLKGKD-LKKSAMGALMDPEMAKEEAIKQETRRV 365

Query:   401 EERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKXXXXXXXX 460
             EERMTLKHKN+ +WAKR+L RGL  + +GTRAAI+EQLQ +A L+RKM S          
Sbjct:   366 EERMTLKHKNTGKWAKRMLSRGLTERYDGTRAAISEQLQINATLSRKMNSTNDGSSSDES 425

Query:   461 XXXXXXXXXXAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEE 520
                        GSDQD  SKL A A+EKTLK + EDD+VP SG+LSLPFM R MKK+ EE
Sbjct:   426 DDEEELS---CGSDQDTPSKLIAKAREKTLKTM-EDDDVPNSGLLSLPFMARAMKKKNEE 481

Query:   521 AIQEANAALQEYESSLKKLEGTGGEENLKEGA-ASGRRVFGPVKR-EVLVPSKKIETDNY 578
             A +EA  A  EY    K+LE  GGE+N K+ A  SGRRVFG   + E    SKK ++DN+
Sbjct:   482 ANEEAKRAFGEY----KELENFGGEDNPKKSADVSGRRVFGATSKVEAPKESKK-DSDNF 536

Query:   579 YGNSDSEGDLEAEANMDAG 597
             Y NSDS+ D+E   N D G
Sbjct:   537 YDNSDSDNDMEGIENNDLG 555
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0006364 "rRNA processing" evidence=IEA;ISS
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0006606 "protein import into nucleus" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
SGD|S000004558 UTP14 "Subunit of U3-containing Small Subunit (SSU) processome complex" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
MGI|MGI:1919804 Utp14a "UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RTH6 LOC100523416 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T0Q8 UTP14A "U3 small nucleolar RNA-associated protein 14 homolog A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5TAP6 UTP14C "U3 small nucleolar RNA-associated protein 14 homolog C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A6QLB4 UTP14A "U3 small nucleolar RNA-associated protein 14 homolog A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ASPGD|ASPL0000053495 AN0475 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279371 utp14 "U3 snoRNP protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPAC57A7.06 SPAC57A7.06 "U3 snoRNP protein Utp14 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028021001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (884 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00018070001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (540 aa)
   •  • 0.555
GSVIVG00019376001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)
   •  • 0.526
GSVIVG00038815001
SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)
   •  • 0.519
GSVIVG00034559001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)
   •  • 0.440
GSVIVG00033408001
SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)
   •    0.439
26N20_60
SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence; (229 aa)
   •  • 0.440
GSVIVG00021672001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa)
   •• • 0.440
GSVIVG00036355001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (842 aa)
   •    0.436
GSVIVG00018638001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa)
   •• • 0.434
GSVIVG00011733001
SubName- Full=Chromosome chr4 scaffold_333, whole genome shotgun sequence; (714 aa)
   •    0.428

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query910
pfam04615728 pfam04615, Utp14, Utp14 protein 1e-166
COG5644869 COG5644, COG5644, Uncharacterized conserved protei 1e-56
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein Back     alignment and domain information 
 Score =  500 bits (1290), Expect = e-166
 Identities = 267/753 (35%), Positives = 394/753 (52%), Gaps = 52/753 (6%)

Query: 140 DEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQI 199
            + +D D++++H ++L  ++ +  E  + +KKK      E+  ESEFN   +     G++
Sbjct: 7   SDEEDDDDEDKHSKLLSAISSLGGEKKKDEKKKA-DRSEESGKESEFNLPSE--GAGGKL 63

Query: 200 SIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKW 259
           ++ DLL  +Q  S   K  K++ ++ KK  ++ APL K +Q++LERK  YE++K++++KW
Sbjct: 64  TLSDLLGSIQDSSSLKKSLKQLDKISKKKKTLEAPLAKRQQDRLERKAAYEKTKEELSKW 123

Query: 260 EPLVKMNREAPSIYFD-EDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDK-VKEAHKQ 317
           +P+VK NR A  + F       G +TV AIA+ F+PRTE E ++AS++ +     +  K 
Sbjct: 124 DPVVKQNRRAEHLVFPLNKEPSGNATVNAIASQFKPRTELESEIASILEESGLASDEKKL 183

Query: 318 DGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAA 377
              + LEL K+S E+    R  + KMR LLFR E K KRIKKIKSK YHR+ KK++LK  
Sbjct: 184 TPFEELELKKLSPEEAKARRAELRKMRELLFREEAKAKRIKKIKSKKYHRVHKKEKLKEE 243

Query: 378 SVE----MLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAA 433
             E    +  DPEAA EE  K E +RAEERMTLKHKN+S+WAK +LK G    DE  R A
Sbjct: 244 LKEFEELVKADPEAALEELEKLERRRAEERMTLKHKNTSKWAKSMLKTGRAKYDEEARKA 303

Query: 434 ITEQLQQHALLTRKMKSMKDSS-SSDDSSDEDDVDENSAGSDQDRASKLYATAKEKTLKV 492
           + EQL+Q   L RK++    S    D+ SD ++ DE+    D D  +      ++K  K+
Sbjct: 304 LEEQLRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENP--WMLRKKLGKL 361

Query: 493 LAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQEYESSLKKLEGTGGEENLKEGA 552
              +D+   SG+LS+ FM R   ++KEE   E     +E    L+  E +  EEN +   
Sbjct: 362 KEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRE----LEGEEESDEEENEEPSK 417

Query: 553 A-SGRRVFGPVKREVLVPSKKIETDNY-----YGNSDSEGDLEAEANMDAGNGTNNDVQK 606
              GRR FGP   E    SKK++ +N         SD E +LE E         N  +++
Sbjct: 418 KNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKR 477

Query: 607 NVKTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKMKSGNDVDANN 666
           + K                  +  E    +P  KT+  V   A     K KS + +D   
Sbjct: 478 SEKAQK-------------EEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAA 524

Query: 667 EK----SMKVVEPALNDQGLEETAREVDEESETD----SEGQMVDGILSSAPKASYKLPS 718
            K    ++KV +    ++ ++     +DEE         E    D  L    K       
Sbjct: 525 NKISKAAVKVKKKKKKEKSIDLDDDLIDEEDSIKLDVDDEEDEDDEELPFLFK------- 577

Query: 719 QEELIRLAFAGDDVEEDFEEDKEKVLNEENPVPEKPNLIPGWGQWTDVQRKKGVPSWMLD 778
           Q++LI+ AFAGDDV  +FE++K++V+ EE+P  E    +PGWG W     KK        
Sbjct: 578 QKDLIKEAFAGDDVVAEFEKEKKEVIEEEDP-KEIDLTLPGWGSWAGDGIKKRKKKRKRK 636

Query: 779 EHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQSIRVPV 838
                K    +  +KRKD  LK+VII+EK +KKA K     LP+PF SKE +E+S+R+P+
Sbjct: 637 RRFLTKIEGVK-KEKRKDKKLKNVIINEKRNKKAAKYQVSQLPFPFESKEQYERSLRMPI 695

Query: 839 GPEFNPATAVGALTRPDVKKKSGIIIKPIKFEE 871
           GPE+N  T    LT+P V  K G IIKP+K   
Sbjct: 696 GPEWNTKTTFQKLTKPRVVTKQGTIIKPMKAPF 728

This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 728
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 910
PF04615735 Utp14: Utp14 protein; InterPro: IPR006709 A large 100.0
COG5644869 Uncharacterized conserved protein [Function unknow 100.0
KOG2172654 consensus Uncharacterized conserved protein [Funct 100.0
KOG2172654 consensus Uncharacterized conserved protein [Funct 95.97
PF10175104 MPP6: M-phase phosphoprotein 6; InterPro: IPR01932 84.47
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-136  Score=1232.13  Aligned_cols=675  Identities=40%  Similarity=0.581  Sum_probs=477.2

Q ss_pred             CCCCchHHHHHHHhhhhCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCccchhhhcccccCCcchhHHHHHHH
Q 002543          143 QDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMH  222 (910)
Q Consensus       143 ~d~dd~~~h~~lL~~i~~l~~~~~~~~~r~k~~~~tE~~~esEF~l~~~~~~g~~kl~l~dLl~~l~~~~~~~~lkk~l~  222 (910)
                      +++||+++|.+||+.|++|.+....+. +++...+++.+.+|||+|++.+  +.++|+|+|||++|. ++.+..++++|.
T Consensus        14 ~~~~~~~~~~~L~~~i~~l~~~~~~~~-~~~~~~~~~~~~~sef~~~~~~--~~~kl~l~dLl~~l~-~~~~~~~~k~l~   89 (735)
T PF04615_consen   14 DDEDDEEKHDKLLKAISSLDSKKRKKK-KKRRERIEESGKESEFNLSSSG--ADDKLSLSDLLSSLS-DSSLSKLKKQLK   89 (735)
T ss_pred             ccccChHHHHHHHHHHHhccccccccc-cccccccccccCcccccCCccC--ccCcccHHHHHhhhc-chhHHHHHHHHH
Confidence            557789999999999999977754332 2344455566789999998642  234999999999999 889999999999


Q ss_pred             HhhhccCcccCCCCchHHHHHHHHHHHHHHHHhhhccHHHHHhhcCCCceeccC-CCCCCCcchhhhhccCCCCCHHHHH
Q 002543          223 QMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDE-DTNLGFSTVGAIAAGFEPRTEFEKK  301 (910)
Q Consensus       223 ~l~~~~~~l~~PL~k~~qeRieRkaAYe~tkkel~kW~~~Vk~NR~Ae~L~Fp~-~~~~~~~~~~~~~s~~kp~TeLE~e  301 (910)
                      .+.++..+|++||++++|+||+|+|||++|+++|++|.|||++||+|+||+||+ +......++..+++.|+|.|+||++
T Consensus        90 ~~~~~~~~l~~PL~~~~~~r~~R~~ay~~~k~~~~kW~~~V~~nr~a~~l~Fp~~~~~~~~~~~~~~~~~~~p~t~lE~~  169 (735)
T PF04615_consen   90 KVSKKKKTLAAPLPKREQERIERKAAYEKTKKELDKWDPTVKRNREAEHLVFPLQKEKPEDSSVASLASKFKPRTELEKE  169 (735)
T ss_pred             HhhcccCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCeeeccCCCccccccchhhhhhccCCCCHHHHH
Confidence            998887789999999999999999999999999999999999999999999997 4566678888999999999999999


Q ss_pred             HHHHhhhccch-hhhhccchhhhhhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchhhHHHHhhHHHHHHHHHh
Q 002543          302 MASLVNDDKVK-EAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVE  380 (910)
Q Consensus       302 i~~lL~~s~l~-~~~~~~~~e~l~~~~mS~EE~k~Rr~EL~kmR~L~fr~E~KaKRikKIKSK~YhRI~KKek~K~~~k~  380 (910)
                      |++||+.+++. .......++.+++++||+||+++||+||++||+||||+|+|||||||||||+|||||||+++|+++++
T Consensus       170 i~~~L~~~~~~~~~~~~~~~e~~~~~~ms~eE~~~r~~el~~~R~L~~~~e~KakR~kKIKSK~yhri~kk~k~k~~~k~  249 (735)
T PF04615_consen  170 IASILEESGLASDEKKLTEAEELALKKMSLEEAKERRAELAKMRALMFYEEAKAKRIKKIKSKTYHRILKKEKEKEQEKE  249 (735)
T ss_pred             HHHHHHHcCCCcchhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcch
Confidence            99999999998 44555678899999999999999999999999999999999999999999999999999999987766


Q ss_pred             h----cCCHHHHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHhccccCCHHHHHHHHHHHHHhHHHHHHHhhcCCCCC
Q 002543          381 M----LMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSS  456 (910)
Q Consensus       381 ~----e~dpe~a~ee~ek~E~~RA~ERmtLKHkntsKWAK~~~~~G~~~~D~e~R~ai~EQL~~~~eL~~Ki~~~~~~ss  456 (910)
                      |    +.||++|+++++++|++||+|||||||+|||||||+|+++|+++||.++|++|+|||++|++||+||.+..++++
T Consensus       250 ~e~l~~~dpe~a~e~~e~~e~~Ra~ERmtlkHkn~sKWAK~~~~~G~~~~d~~~R~al~eql~~~~eL~~Ki~~~~~~~~  329 (735)
T PF04615_consen  250 FEELEESDPEAAEEELEKLEKKRAEERMTLKHKNTSKWAKSMLRRGRAKYDEEARQALQEQLRRGEELTRKIEGEDSSDS  329 (735)
T ss_pred             HHHHhhcChhhhHHHHHHHHHHHHHHHhhccccccCHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence            5    379999999999999999999999999999999999999999999999999999999999999999999765433


Q ss_pred             CCCC-CCccccccc-----cCCCCHHHHHHHHHHHHHHHHHhhh-ccCCCCcccccCchHHHHHHHHHHHHHHHHHHHHH
Q 002543          457 SDDS-SDEDDVDEN-----SAGSDQDRASKLYATAKEKTLKVLA-EDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAAL  529 (910)
Q Consensus       457 sded-~de~d~de~-----~~~sde~~~~~l~~~ake~~l~~l~-~d~e~p~~GL~~MkFMqrA~~~~kee~~ee~~~~l  529 (910)
                      ++++ +++++++.+     .++.++++....        +..+. .......+|||+|+||++|++++++++.+++..++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~gl~~mkFMk~a~erk~ee~~~e~~~l~  401 (735)
T PF04615_consen  330 DEDEESDEEEEDEDDDEDDDDDDNPWMLRKK--------LEKLKEEEEDEEKKGLMSMKFMKRAEERKKEENDEEAEELR  401 (735)
T ss_pred             ccccccccccchhhhccccccccCHHHHHHh--------hhhhhhcccchhhhhccchHHHHhhHHhHHHHHHHHHHHHH
Confidence            3221 111111111     111222322111        11111 11222378999999999999999999999999999


Q ss_pred             HHHHHHhhhhcCCCCcc-cccccccCCccccCCccccccCCCccccccccCCCCCCcchhHHhhhcccCCCCCccccccc
Q 002543          530 QEYESSLKKLEGTGGEE-NLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGTNNDVQKNV  608 (910)
Q Consensus       530 ~ele~~l~~~e~~~~ee-~~~~~~~~GRr~f~~~~~~~~~~~~k~~~~~~~~~sd~~~e~~~~~~~~l~~~~~~~~~~~~  608 (910)
                      ++|+..    .....+. ........||++|+++........... ....  ..........+.................
T Consensus       402 ~Ele~~----~~~~~e~~~~~~~~~~gR~~~~~~~~~~~~~s~~~-~~~~--~~~~k~e~~sd~~~~~~~~~~~~~~~~~  474 (735)
T PF04615_consen  402 RELEEE----ESEDEEEEEENEEKNVGRRKFGPGSSEKAKESKKD-SKEN--KSESKEEKSSDEEEDKENKMEDKVEKEE  474 (735)
T ss_pred             HHHhhh----hhcccccccccccccccccccccccccccccccch-hhhh--hhhhhhcccccccccccccccccccccc
Confidence            998752    1111111 123456789999998541111100000 0000  0000000000000000000000000000


Q ss_pred             c-CCcccccccCCCCCCCcccccccccCCCCCCCcccccccccCccccccCCCcc----------------ccccccccc
Q 002543          609 K-TDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKMKSGNDV----------------DANNEKSMK  671 (910)
Q Consensus       609 ~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~k~~~~~----------------~~~~~k~~k  671 (910)
                      . ..............                    .......|+|+........                ........+
T Consensus       475 ~~~~~~k~~~~~~~~~--------------------~~~~~~eNpwl~~~~k~~k~~~~~~~k~~~~~~~~~~~~~~~~~  534 (735)
T PF04615_consen  475 NKKKKKKSESAEDEEE--------------------KEEDDKENPWLKEESKKSKSKKKKKKKKKEISSEVNKSSNKISK  534 (735)
T ss_pred             cccccccccccccccc--------------------cccccccchhhhcccccccccccccccccccccccccccccccc
Confidence            0 00000000000000                    0000122333221100000                000000000


Q ss_pred             cccc---------------ccccCCccccccccccCccccccccccccccccCCccCCCCccHHHHHHHhcCCCchHHHH
Q 002543          672 VVEP---------------ALNDQGLEETAREVDEESETDSEGQMVDGILSSAPKASYKLPSQEELIRLAFAGDDVEEDF  736 (910)
Q Consensus       672 ~~~~---------------~~~~~~~~~~~~~~~~~sd~d~e~~~v~~~~~s~~k~~~~~~~Q~eLIkeAFAgDDVv~eF  736 (910)
                      ....               +................++++++..+            ..++.|++||++||||||||++|
T Consensus       535 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~------------~~~~~q~~li~~AFA~DdV~~eF  602 (735)
T PF04615_consen  535 SQAKVKKKKKKEKSKDESNILIDEENEVQIKSVDTDEDDEDDEED------------PFAFEQRELIREAFAGDDVVAEF  602 (735)
T ss_pred             cccccccccccccccccccccccccchhcccccccccccccchhh------------hhhHHHHHHHHHHhcCCchHHHH
Confidence            0000               00000000000000001111111110            11369999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCccccccccccccCCCCcchhhHHHHHHhHHHHhhcccccCCCceEEcccccccccccc
Q 002543          737 EEDKEKVLNEENPVPEKPNLIPGWGQWTDVQRKKGVPSWMLDEHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLH  816 (910)
Q Consensus       737 ~kEK~~~ieee~pk~e~D~tLPGWGsW~G~~~Kk~~ps~~~~~~e~~KKkr~~~~kkRKDa~L~~VIInEKrdKK~~Kyq  816 (910)
                      ++||.++++++.|+ ++|+||||||+|||.|.+++.++|+.+++. .+|..++.+++|+|++|+||||||++|+|++|||
T Consensus       603 ~~eK~~~~e~e~pk-~~~~~LPGWG~W~G~g~~~~~~~~~~~~~~-~~k~~~~~~~~RkD~~l~~VIInEk~~kk~~k~~  680 (735)
T PF04615_consen  603 EKEKEEEIEEEKPK-EIDLTLPGWGSWAGPGIKKSKKKRKKKKRF-VKKIPGVKKKKRKDAKLKHVIINEKRDKKAAKYQ  680 (735)
T ss_pred             HHHHHHHHhhhCCc-ccccCCCCcccccCCCcCccchhhhhhhhh-hhccccccccCCcccccCCeeecCcccchhhhhc
Confidence            99999999999997 589999999999999877665443332222 2333344567999999999999999999999999


Q ss_pred             cCCCCCCCCCHHHHHHHhcCCCCCCCChHHHHhhhccCceeccCCccccCCCcc
Q 002543          817 TKTLPYPFTSKEVFEQSIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKFE  870 (910)
Q Consensus       817 v~~LPfPFts~eQyErSlR~PIG~EWNT~~afqkLt~PrVvtK~G~II~Pi~~e  870 (910)
                      |++|||||+|++|||+|||+||||||||.++||+||+|+|+||+|+||.||+.+
T Consensus       681 ~~~lP~pf~~~~qyE~slr~PiG~ewnt~~~~~~l~~P~V~~k~G~iI~P~~~p  734 (735)
T PF04615_consen  681 VSELPFPFTSKEQYERSLRQPIGPEWNTETAHQKLTKPRVVTKAGTIIEPMKKP  734 (735)
T ss_pred             cccCCCCCCCHHHHHHHhcCCCCCCcChHHHHHHhhCCeeeccCCceeCCCCCC
Confidence            999999999999999999999999999999999999999999999999999875

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
>COG5644 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2172 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2172 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10175 MPP6: M-phase phosphoprotein 6; InterPro: IPR019324 This entry describes M-phase phosphoprotein 6 (MPP6), which is involved in generation of the 3' end of the 5 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query910
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 61.0 bits (147), Expect = 1e-09
 Identities = 64/507 (12%), Positives = 134/507 (26%), Gaps = 125/507 (24%)

Query: 36  GEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPL--PQEESRKNR 93
           GE + +    L       +D  +   +    + I S E     E +  +      S   R
Sbjct: 12  GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE-----EIDHIIMSKDAVSGTLR 66

Query: 94  RFDPVENYEYELPEKFEDENVLSDD--------EDDNNDIENNCGRRGISKQVGDEFQDG 145
            F  + + + E+ +KF +E VL  +        + +          R   +Q    + D 
Sbjct: 67  LFWTLLSKQEEMVQKFVEE-VLRINYKFLMSPIKTEQRQPSMM--TRMYIEQRDRLYNDN 123

Query: 146 D-----NDERH------------LRMLQGVT--GMPSEFFEGKKKKKNVVISEAYPESEF 186
                 N  R             LR  + V   G+      G    K  V  +     + 
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG---SG----KTWVALDVCLSYKV 176

Query: 187 NPTRDVLDGN------GQI-SIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAPLPKPE 239
              +  +D            S + +LE LQ      ++          S+++   L    
Sbjct: 177 ---QCKMDFKIFWLNLKNCNSPETVLEMLQ--KLLYQIDPNWTSRSDHSSNI--KLRIHS 229

Query: 240 -QEKLERKVVYEQSKK------DITKWEP-LVKMNREAPSIYFD---------EDTNLGF 282
            Q +L R +  +  +       ++                  F+             +  
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNV--QNAKAWN--------AFNLSCKILLTTRFKQVTD 279

Query: 283 STVGA---------IAAGFEPRTEFEKKMASLVN---DDKVKEAHKQDGSKLLELNKISV 330
               A          +    P  E +  +   ++    D  +E      +       +S+
Sbjct: 280 FLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLT--TNPRR----LSI 332

Query: 331 EDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAK- 389
              + E           ++H +   ++  I   +   +L+    +     + + P +A  
Sbjct: 333 ---IAESIRDGLATWDNWKH-VNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 390 ---------EEARKQEFKRAEERMTLKHKNS--SRWAKRILKRGLDAQDEGTRAAITEQL 438
                     +  K +       +   HK S   +  K           E  +  +  + 
Sbjct: 388 PTILLSLIWFDVIKSD---VMVVVNKLHKYSLVEKQPKESTISIPSIYLE-LKVKLENEY 443

Query: 439 QQHALLTRKMKSMKDSSSSDDSSDEDD 465
             H  +       K   S D      D
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLD 470
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00