Citrus Sinensis ID: 002613

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900

MRKRPQPEASSSSSSASKSEPQASDEQIKTGSSNDIHVRSAKRSGLAWTVAFAAFVYATYGVYYYQYEHMPPPLTADQAGKRGFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLPKGNAMEKEGKTVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANPWLAVGLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFPRPLKLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSEDTARAVNVVHVVDASGKFGGKQEPSSFIALYSTTPGKLTKEVEQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVPTIHVESEGFGIMDTKGNDNGRITKVSIDMKGSVRWSLAIDAEEIEDFTFKEGSEELVPRDEKSGMDGWHIIQFSGGKNAVSKFDLDLYWAKNSTESYHNANRKEKQRPLLKLRTDFDRLTPKTERVLSKLPAWCSLFGKSTSPQTLSFLNSLPVNF

cccccccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccccccccEEEEccccEEEEEEcccccccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEcccccccccccHHHHHHccccHHHHHHHHHHccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEcccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEccccccccccccEEEEEEcccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEEccccEEEEEEEccccccEEEEcccccccccccccccccEEEEEEEccccccEEEEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccEEEEccccccc

ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEccccEEEEEcccccccEEEEcccEEEEEEEcccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHccccccccccEEEEccccccccEEEEEcccEEEEEcccccccccccHHHHccHHHHHHHHHHHccHHcccHHHHccccccccccEEEEEHHHEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHcccHHEHHEHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEEEEEEEcccccEEEEEEcccccccccHHHHHcccccEcccccEEEEEEEEEEEccEcccccccccccccccccEEccccEEEEEccccccccEEEEEEEcccccEEEEEEcccccccEEEEcccHHccccccccccccEEEEEEccccccccEEEEEEEEcccccccccccccccccccEEEEEcccccccHHHHHHHHHcccccccccccccHHHHHHHHcccccc

mrkrpqpeassssssasksepqasdeqiktgssndihvRSAKRSGLAWTVAFAAFVYATYGVyyyqyehmpppltadqagkrgfSEFEAIKHVKAltelgphpvgsdaLDRALQYVFAAAQKIKetkhwevdVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTvfaaegagdcSSCVAVMLELARAMSQWAHGFKNAVIFLFNtgeeeglngahsfvtqagphpwavENFAaaakypsgqvtaqdlfasgaitsatdFQVYKEVAglsgldfaytdksavyhtkndkldllkpgslqhLGENMLAFLLQAasstslpkgnamekegktvHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFIlpqissspvpyvanpwlaVGLFAAPAFLGALTGQHLGYIILKAYLANMFSkrmqlspivqADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALfwlvppafaygfleatltpvrfprpLKLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRfdrnpggtpewlGNVILAVFIAVVLCLTLVYLLSYVhlsgakrpiAIASCVLFVLSLILVLsgtvppfsedtaRAVNVVHVVDasgkfggkqepssfialysttpgkltKEVEQIKEGFVCGRDNVVDFVTLSMEYGcltydgteggwsqsdvptihvesegfgimdtkgndngrITKVSIDMKGSVRWSLAidaeeiedftfkegseelvprdeksgmdgwhiiqfsggknavskfdldlywaknstesyhnanrkekqrpllklrtdfdrltpktervlsklpawcslfgkstspqtlsflnslpvnf

mrkrpqpeassssssasksepqasdeqiktgssndiHVRSAKRSGLAWTVAFAAFVYATYGVYYYQYEHMPPPLTADQAGKRGFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLPKGNAMEKEGKTVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANPWLAVGLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFPRPLKLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSEDTARAVNVVHVVDASgkfggkqepssfiALYSTTPGKLTKEVEQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVPTIHVESEGfgimdtkgndnGRITKVSIDMKGSVRWSLAIDaeeiedftfkegseelvprdeksgMDGWHIIQFSGGKNAVSKFDLDLYWAKNStesyhnanrkekqrpllklrtdfdrltpktervlskLPAWCSLFgkstspqtlsflnslpvnf

MRKRpqpeassssssasksepqasDEQIKTGSSNDIHVRSAKRSGLawtvafaafvyatygvyyyQYEHMPPPLTADQAGKRGFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLPKGNAMEKEGKTVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLvfsvsfavviafiLPQISSSPVPYVANPWlavglfaapaflgalTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFprplklatlllglavpvlvsaGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIAscvlfvlslilvlsGTVPPFSEDTARAVNVVHVVDASGKFGGKQEPSSFIALYSTTPGKLTKEVEQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVPTIHVESEGFGIMDTKGNDNGRITKVSIDMKGSVRWSLAIDAEEIEDFTFKEGSEELVPRDEKSGMDGWHIIQFSGGKNAVSKFDLDLYWAKNSTESYHNANRKEKQRPLLKLRTDFDRLTPKTERVLSKLPAWCSLFGKSTSPQTLSFLNSLPVNF

*******************************************SGLAWTVAFAAFVYATYGVYYYQYEHMPPPLT*****KRGFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQ******************TVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANPWLAVGLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFPRPLKLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSEDTARAVNVVHVVDASGKFGG****SSFIALYSTTPGKLTKEVEQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVPTIHVESEGFGIMDTKGNDNGRITKVSIDMKGSVRWSLAIDAEEIEDFTFK**************MDGWHIIQFSGGKNAVSKFDLDLYWAKN*********************TDFDRLTPKTERVLSKLPAWCSLFGK*****************

*********************************************LAWTVAFAAFVYATYGVYYYQYEH******************EAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSL*************HETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANPWLAVGLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFPRPLKLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSEDTARAVNVVHVVDASGKFGGKQEPSSFIALYSTTPGKLTKEVEQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVPTIHVESEGF***********RITKVSIDMKGSVRWSLAIDAEEIEDFTFKEGSEELVP*DEKSGMDGWHIIQFSGGKNAVSKFDLDLYWAKNSTESYHNANRKEKQRPLLKLRTDFDRLTPKTERVLSKLPAWCSLFGKSTSPQTLSFLNSLPVNF

******************************GSSNDIHVRSAKRSGLAWTVAFAAFVYATYGVYYYQYEHMPPPLTADQAGKRGFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTS**********GKTVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANPWLAVGLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFPRPLKLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSEDTARAVNVVHVVDASGKFGGKQEPSSFIALYSTTPGKLTKEVEQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVPTIHVESEGFGIMDTKGNDNGRITKVSIDMKGSVRWSLAIDAEEIEDFTFKEGSEELVPRDEKSGMDGWHIIQFSGGKNAVSKFDLDLYWAKNSTESYHNANRKEKQRPLLKLRTDFDRLTPKTERVLSKLPAWCSLFGKSTSPQTLSFLNSLPVNF

***************************************SAKRSGLAWTVAFAAFVYATYGVYYYQYEHMPPPLTADQAGKRGFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLPKGNA*EKEGKTVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANPWLAVGLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFPRPLKLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSEDTARAVNVVHVVDASGKFGGKQEPSSFIALYSTTPGKLTKEVEQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVPTIHVESEGFGIMDTKGNDNGRITKVSIDMKGSVRWSLAIDAEEIEDFTFKEGSEELVPRDEKSGMDGWHIIQFSGGKNAVSKFDLDLYWAKN************KQRPLLKLRTDFDRLTPKTERVLSKLPAWCSLFGKSTSPQTLSFLNSLPVNF

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		900	2.2.26 [Sep-21-2011]
Q7Z2K6		904	Endoplasmic reticulum met	yes	no	0.588	0.586	0.252	2e-40
Q3UVK0		898	Endoplasmic reticulum met	yes	no	0.591	0.592	0.247	3e-40
Q6UPR8		898	Endoplasmic reticulum met	yes	no	0.595	0.596	0.25	2e-37
Q09216		895	Uncharacterized protein B	yes	no	0.533	0.536	0.264	8e-37
Q0VGW4		876	Endoplasmic reticulum met	N/A	no	0.594	0.610	0.245	6e-35
O94702		822	Uncharacterized zinc meta	yes	no	0.367	0.402	0.282	1e-29
Q18600		895	Uncharacterized zinc meta	no	no	0.428	0.431	0.231	2e-28
E4ZQC4		802	Probable zinc metalloprot	N/A	no	0.46	0.516	0.237	8e-20
E3RFJ1		957	Probable zinc metalloprot	N/A	no	0.293	0.275	0.282	9e-20
Q6CDE6		989	Probable zinc metalloprot	yes	no	0.246	0.224	0.299	1e-19

>sp\|Q7Z2K6\|ERMP1_HUMAN Endoplasmic reticulum metallopeptidase 1 OS=Homo sapiens GN=ERMP1 PE=1 SV=2	Back alignment and function desciption

 Score =  168 bits (426), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 160/634 (25%), Positives = 288/634 (45%), Gaps = 104/634 (16%)

Query: 79  AGKRG-FSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDF 137
           AG RG F   +A  +++ +T +GP   GS   +  +  V    ++IK      ++V+ + 
Sbjct: 101 AGHRGEFDALQARDYLEHITSIGPRTTGSP--ENEILTVHYLLEQIKL-----IEVQSNS 153

Query: 138 FHAKSGANRLVSGAFM-----GRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVF 192
            H  S   +  +G+F      G T  Y ++ ++V++++P+   + A++A+L + H D+V 
Sbjct: 154 LHKISVDVQRPTGSFSIDFLGGFTSYYDNITNVVVKLEPR---DGAQHAVLANCHFDSVA 210

Query: 193 AAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ------ 246
            + GA D +   +VMLE+ R +S  +    +AVIFLFN  EE  L  +H F+TQ      
Sbjct: 211 NSPGASDDAVSCSVMLEVLRVLSTSSEALHHAVIFLFNGAEENVLQASHGFITQHPWASL 270

Query: 247 --------------------AGP-HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDF 285
                                GP +PW V+ + +AAK+P   V AQ++F SG I S TDF
Sbjct: 271 IRAFINLEAAGVGGKELVFQTGPENPWLVQAYVSAAKHPFASVVAQEVFQSGIIPSDTDF 330

Query: 286 QVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLPK 345
           ++Y++   + G+D A+ +   +YHTK D  D +   S+Q  G+N+LA L   A+S  L  
Sbjct: 331 RIYRDFGNIPGIDLAFIENGYIYHTKYDTADRILTDSIQRAGDNILAVLKHLATSDMLAA 390

Query: 346 GNAMEKEGKTVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVM------ 399
            +      K  H   V+FD+LG +++ Y     +++ N ++V  ++++     +      
Sbjct: 391 AS------KYRHGNMVFFDVLGLFVIAYPSRIGSII-NYMVVMGVVLYLGKKFLQPKHKT 443

Query: 400 GGYPA--AVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANPWLAVGLFAAP 457
           G Y       L +T +S    LV  +  AV I+ I   +S     +  + +++V L+   
Sbjct: 444 GNYKKDFLCGLGITLISWFTSLVTVLIIAVFISLIGQSLS-----WYNHFYVSVCLYGTA 498

Query: 458 AFLGALTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQWLILLA 517
                     +  IIL   LA  F   M  S        +   E +   + F+    L+ 
Sbjct: 499 T---------VAKIILIHTLAKRF-YYMNASA-------QYLGEVFFDISLFVHCCFLVT 541

Query: 518 LGNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFPRPLK--------LATLLLGLAVP 569
           L  +  + S FI+  W+  P          LT +   +  K        +A  LLG+ +P
Sbjct: 542 L-TYQGLCSAFISAVWVAFP---------LLTKLCVHKDFKQHGAQGKFIAFYLLGMFIP 591

Query: 570 VLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLS 629
            L +      +  +   I+ R         E   +V+LA  +A    +   Y +++++L+
Sbjct: 592 YLYALYLIWAVFEMFTPILGR------SGSEIPPDVVLASILAGCTMILSSYFINFIYLA 645

Query: 630 GAKRPIAIASCVLFVLSLILVLSGTVPPFSEDTA 663
            + +   +   ++  ++ +LV SGT  P+S + A
Sbjct: 646 KSTKKTMLTLTLVCAITFLLVCSGTFFPYSSNPA 679

Within the ovary, required for the organization of somatic cells and oocytes into discrete follicular structures.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 4EC: .EC: -EC: .EC: -

>sp\|Q3UVK0\|ERMP1_MOUSE Endoplasmic reticulum metallopeptidase 1 OS=Mus musculus GN=Ermp1 PE=1 SV=2	Back alignment and function description

>sp\|Q6UPR8\|ERMP1_RAT Endoplasmic reticulum metallopeptidase 1 OS=Rattus norvegicus GN=Ermp1 PE=1 SV=1	Back alignment and function description

>sp\|Q09216\|YP67_CAEEL Uncharacterized protein B0495.7 OS=Caenorhabditis elegans GN=B0495.7 PE=1 SV=2	Back alignment and function description

>sp\|Q0VGW4\|ERMP1_XENLA Endoplasmic reticulum metallopeptidase 1 OS=Xenopus laevis GN=ermp1 PE=2 SV=1	Back alignment and function description

>sp\|O94702\|YC52_SCHPO Uncharacterized zinc metalloprotease C1259.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1259.02c PE=3 SV=1	Back alignment and function description

>sp\|Q18600\|YTV2_CAEEL Uncharacterized zinc metalloprotease C44B7.11 OS=Caenorhabditis elegans GN=C44B7.11 PE=1 SV=4	Back alignment and function description

>sp\|E4ZQC4\|M28P1_LEPMJ Probable zinc metalloprotease Lema_P032730 OS=Leptosphaeria maculans (strain JN3 / isolate v23.1.3 / race Av1-4-5-6-7-8) GN=Lema_P032730 PE=3 SV=1	Back alignment and function description

>sp\|E3RFJ1\|M28P1_PYRTT Probable zinc metalloprotease PTT_06479 OS=Pyrenophora teres f. teres (strain 0-1) GN=PTT_06479 PE=3 SV=1	Back alignment and function description

>sp\|Q6CDE6\|M28P1_YARLI Probable zinc metalloprotease YALI0C01133g OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0C01133g PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		900
225449044		900	PREDICTED: endoplasmic reticulum metallo	0.953	0.953	0.691	0.0
255584015		921	ATP binding protein, putative [Ricinus c	0.986	0.964	0.655	0.0
449449477		908	PREDICTED: endoplasmic reticulum metallo	0.974	0.965	0.625	0.0
357443249		917	Endoplasmic reticulum metallopeptidase [	0.975	0.957	0.633	0.0
356533971		912	PREDICTED: endoplasmic reticulum metallo	0.942	0.929	0.660	0.0
297808135		911	hypothetical protein ARALYDRAFT_910108 [	0.973	0.961	0.589	0.0
15242031		910	vacuolar protein / peptidase dimerizatio	0.97	0.959	0.585	0.0
326494824		907	predicted protein [Hordeum vulgare subsp	0.967	0.960	0.558	0.0
357164731		909	PREDICTED: endoplasmic reticulum metallo	0.968	0.959	0.551	0.0
413953477		908	hypothetical protein ZEAMMB73_851599 [Ze	0.977	0.969	0.546	0.0

>gi\|225449044\|ref\|XP_002274159.1\| PREDICTED: endoplasmic reticulum metallopeptidase 1 [Vitis vinifera] gi\|296086015\|emb\|CBI31456.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1281 bits (3316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/895 (69%), Positives = 739/895 (82%), Gaps = 37/895 (4%)

Query: 34  NDIHVRSAKRSGLAWTVAFAAFVYATYGVYYYQYEHMPPPLTADQAGKRGFSEFEAIKHV 93
           N   V+  KRS L W   F   +Y ++ V+YYQ+++MP PL AD AGKRGFSE EAI+HV
Sbjct: 15  NSSGVKYPKRSALVWLALFVVIIYFSWAVHYYQFDNMPAPLGADHAGKRGFSEVEAIRHV 74

Query: 94  KALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFM 153
           +ALT++GPH +GSDALD ALQYV A A+KIK+  HWEVDV+VDFFHAKSGANR+VSG F+
Sbjct: 75  RALTQVGPHSIGSDALDDALQYVLAEAEKIKKMAHWEVDVQVDFFHAKSGANRMVSGLFV 134

Query: 154 GRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARA 213
           G+TLIYSDL HI+LRI PKYASEA +NAILVSSHIDTVF+ EGAGDCSSCVAVMLELAR 
Sbjct: 135 GKTLIYSDLYHIILRILPKYASEAEDNAILVSSHIDTVFSTEGAGDCSSCVAVMLELARG 194

Query: 214 MSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ--------------------------A 247
           +SQWAHGFKNAVIFLFNTGEEEGLNGAHSF+TQ                          A
Sbjct: 195 VSQWAHGFKNAVIFLFNTGEEEGLNGAHSFITQHPWSSTIRMAIDLEAMGIGGKSSIFQA 254

Query: 248 GPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAV 307
           GPHP A+ENFA AAKYP+GQ+ +QD+F+SG I SATDFQVY+EVAGLSGLDFAYTD SAV
Sbjct: 255 GPHPLAIENFAKAAKYPNGQIVSQDIFSSGVIKSATDFQVYQEVAGLSGLDFAYTDNSAV 314

Query: 308 YHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLPKGNAMEKEGKTVHETAVYFDILG 367
           YHTKNDKL+LLKPGSLQHLG+NMLAFLLQ A S +LPKG AME E KT HETA++FDILG
Sbjct: 315 YHTKNDKLELLKPGSLQHLGDNMLAFLLQTAPS-NLPKGKAMEAEEKTGHETAIFFDILG 373

Query: 368 TYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVFSVSFAV 427
           TYMV+YRQ FAN+LHNSVI+QS+LIW  SL+MGGYPAAVSLAL+CLS ILM +FS+SF++
Sbjct: 374 TYMVVYRQRFANLLHNSVIMQSILIWVTSLLMGGYPAAVSLALSCLSVILMWIFSLSFSI 433

Query: 428 VIAFILPQISSSPVPYVANPWLAVGLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQ- 486
            + F+LP ISSSPVP+VANPWL VGLFAAPAFLGALTGQHLGY+IL +YL++  SKRMQ 
Sbjct: 434 PVGFLLPLISSSPVPFVANPWLVVGLFAAPAFLGALTGQHLGYLILHSYLSHASSKRMQN 493

Query: 487 LSPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPAFAYGFLEA 546
           LSP++QAD+IK EAERWLFKAGF+QW +LL +GN+YKIGS+++AL WLV PAFAYGFLEA
Sbjct: 494 LSPVIQADVIKFEAERWLFKAGFVQWFVLLMVGNYYKIGSSYVALVWLVSPAFAYGFLEA 553

Query: 547 TLTPVRFPRPLKLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVI 606
           TL+PVR PRPLK+ TLL+G+++P+L+SAG FIR+A  ++   VRFDRNPG TPEWLGNVI
Sbjct: 554 TLSPVRLPRPLKIVTLLMGISLPILLSAGMFIRMAGTLIGTAVRFDRNPGSTPEWLGNVI 613

Query: 607 LAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSEDTARAV 666
           +A++IA V+CLTL YLLSY HLSGAK+ I +++C+LF LSL +VLSGTVP F+EDTARAV
Sbjct: 614 IAIYIAAVICLTLAYLLSYFHLSGAKKSIVLSTCMLFGLSLAVVLSGTVPSFTEDTARAV 673

Query: 667 NVVHVVDASGKFGGKQEPSSFIALYSTTPGKLTKEVEQIKEGFVCGRDNVVDFVTLSMEY 726
           NVVHVVD + K+G  Q+P S+I+++STTPG L KEVEQI EGFVCGRD V+DFVT S++Y
Sbjct: 674 NVVHVVDTTEKYGEMQDPRSYISIFSTTPGNLIKEVEQINEGFVCGRDKVLDFVTFSVKY 733

Query: 727 GCLTYDGTEGGWSQSDVPTIHVESEGFGIMDTKGNDNGRITKVSIDMKGSVRWSLAIDAE 786
           GCLT D   GGWS+SD+P +HV+S      DT+G  +GR T++SID K S RWSLAI+ +
Sbjct: 734 GCLTNDDIGGGWSKSDIPVLHVDS------DTEG--DGRTTQISIDTKVSTRWSLAINTQ 785

Query: 787 EIEDFTFKEGSEELVPRDEKSGMDGWHIIQFSGGKNAVSKFDLDLYWAKNSTESYHNAN- 845
           EIEDF FKE S+ELVP   K   +GWHI QFSGGKN+ ++FDL L+W KNST+S HNA+ 
Sbjct: 786 EIEDFLFKENSDELVPLGGKGSNNGWHIFQFSGGKNSPTRFDLTLFWRKNSTKSAHNADG 845

Query: 846 RKEKQRPLLKLRTDFDRLTPKTERVLSKLPAWCSLFGKSTSPQTLSFLNSLPVNF 900
           ++ +QRPLLKLRTD +RLTPK  RVL+KLP+WCS FGKSTSP  L+FL SLPV F
Sbjct: 846 QRAEQRPLLKLRTDVNRLTPKAARVLTKLPSWCSQFGKSTSPYNLAFLTSLPVLF 900

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255584015\|ref\|XP_002532753.1\| ATP binding protein, putative [Ricinus communis] gi\|223527504\|gb\|EEF29630.1\| ATP binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449449477\|ref\|XP_004142491.1\| PREDICTED: endoplasmic reticulum metallopeptidase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357443249\|ref\|XP_003591902.1\| Endoplasmic reticulum metallopeptidase [Medicago truncatula] gi\|355480950\|gb\|AES62153.1\| Endoplasmic reticulum metallopeptidase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356533971\|ref\|XP_003535531.1\| PREDICTED: endoplasmic reticulum metallopeptidase 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|297808135\|ref\|XP_002871951.1\| hypothetical protein ARALYDRAFT_910108 [Arabidopsis lyrata subsp. lyrata] gi\|297317788\|gb\|EFH48210.1\| hypothetical protein ARALYDRAFT_910108 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15242031\|ref\|NP_197566.1\| vacuolar protein / peptidase dimerization domain-containing protein [Arabidopsis thaliana] gi\|110741500\|dbj\|BAE98701.1\| 24 kDa vacuolar protein - like [Arabidopsis thaliana] gi\|332005489\|gb\|AED92872.1\| vacuolar protein / peptidase dimerization domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|326494824\|dbj\|BAJ94531.1\| predicted protein [Hordeum vulgare subsp. vulgare] gi\|326513062\|dbj\|BAK03438.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

>gi\|357164731\|ref\|XP_003580148.1\| PREDICTED: endoplasmic reticulum metallopeptidase 1-like [Brachypodium distachyon]	Back alignment and taxonomy information

>gi\|413953477\|gb\|AFW86126.1\| hypothetical protein ZEAMMB73_851599 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		900
TAIR\|locus:2180494		910	AT5G20660 [Arabidopsis thalian	0.712	0.704	0.527	1.9e-258
POMBASE\|SPCC1259.02c		822	SPCC1259.02c "Endoplasmic Reti	0.194	0.212	0.307	4.9e-25
FB\|FBgn0053012		879	CG33012 [Drosophila melanogast	0.343	0.351	0.275	5.8e-25
UNIPROTKB\|B3KSB1		351	ERMP1 "Endoplasmic reticulum m	0.188	0.484	0.331	3.8e-22
UNIPROTKB\|E1C3Q6		885	ERMP1 "Uncharacterized protein	0.19	0.193	0.340	1.2e-19
UNIPROTKB\|F1MI95		892	ERMP1 "Uncharacterized protein	0.203	0.205	0.321	4.3e-19
UNIPROTKB\|E7ER77		841	ERMP1 "Endoplasmic reticulum m	0.188	0.202	0.331	5.8e-19
UNIPROTKB\|Q7Z2K6		904	ERMP1 "Endoplasmic reticulum m	0.188	0.188	0.331	7.3e-19
MGI\|MGI:106250		898	Ermp1 "endoplasmic reticulum m	0.188	0.189	0.336	1.5e-18
UNIPROTKB\|F1PSG1		896	ERMP1 "Uncharacterized protein	0.188	0.189	0.336	2.8e-18

TAIR\|locus:2180494 AT5G20660 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1781 (632.0 bits), Expect = 1.9e-258, Sum P(2) = 1.9e-258
 Identities = 350/664 (52%), Positives = 451/664 (67%)

Query:   239 GAHSFVTQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLD 298
             G  S + QAGP PWA+ENFA AAKYPSGQ+  QDLF SG I SATDFQVYKEVAGLSGLD
Sbjct:   262 GGKSSIFQAGPSPWAIENFALAAKYPSGQIIGQDLFTSGIIKSATDFQVYKEVAGLSGLD 321

Query:   299 FAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLPKGNAMEKEGKTVHE 358
             FA+ D +AVYHTKNDK++L+KPGSLQHLGENMLAFLL+ ASS+ LPK   ++ E ++  +
Sbjct:   322 FAFADNTAVYHTKNDKIELIKPGSLQHLGENMLAFLLRVASSSDLPKDKTLQGEERSNPD 381

Query:   359 TAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILM 418
             +AVYFD+LG YM++YRQ  A ML+ SVI+QS+LIW  S+ MGGYPA VSL L+CLS IL 
Sbjct:   382 SAVYFDVLGKYMIVYRQSLATMLYVSVIMQSILIWVLSVFMGGYPAVVSLILSCLSIILS 441

Query:   419 LXXXXXXXXXXXXXLPQISSSPVPYVANPWXXXXXXXXXXXXXXXTGQHLGYIILKAYLA 478
                           LP ISSSPVP+ +NPW               +GQH+ +I L+   +
Sbjct:   442 WIFSVAFSVAVAFILPWISSSPVPFASNPWMVVGLFVSPAILGSISGQHVAFIFLRKKSS 501

Query:   479 NMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPA 538
             N  S +MQ+SP ++ +L +LEAERWLFK+GF+QWL+LLALG +YK+GST++AL WLVPPA
Sbjct:   502 NRNSNKMQVSPRLRDNLARLEAERWLFKSGFIQWLVLLALGTYYKLGSTYLALVWLVPPA 561

Query:   539 FAYGFLEATLTPVRFXXXXXXXXXXXXXXXXXXXXXGNFIRLANVIVAIVVRFDRNPGGT 598
             FAYG LEATL+P+R                      G+FI+L   ++ +++RFD NPG T
Sbjct:   562 FAYGLLEATLSPIRLPKPLKLATLLISLAVPILVSSGSFIQLTGTMIGMLIRFDSNPGVT 621

Query:   599 PEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIAXXXXXXXXXXXXXXGTVPPF 658
             PEWLG+ ++AV IA  + L++VYLL+Y+HLSGAK+ I  A              G +P F
Sbjct:   622 PEWLGSALIAVAIATFISLSMVYLLAYIHLSGAKKSIVTALCIITALSLALVSSGVLPAF 681

Query:   659 SEDTARAVNVVHVVDASGKFGGKQEPSSFIALYSTTPGKLTKEVEQIKEGFVCGRDNVVD 718
             +EDTARAVNVVHVVD SG     Q+  +FI+L+S TPG L  E EQIKEGF CGR+N +D
Sbjct:   682 TEDTARAVNVVHVVDTSG-----QDQVAFISLFSNTPGNLNMEAEQIKEGFRCGRENKID 736

Query:   719 FVTLSMEYGCLTYDGTEGGWSQSDVPTIHVESEGFGIMDTKGNDNGRITKVSIDMKGSVR 778
             FV+   +Y C+T    E GW + D+P + V       ++ K  + GR+  VS+D  GS R
Sbjct:   737 FVSFEAKYNCVTKKDAEVGWDKHDIPVLRV-------INDKEREGGRVIAVSMDTGGSSR 789

Query:   779 WSLAIDAEEIEDFTFKEGSEE----LVPRDEKSGMD-GWHIIQFSGGKNAVSKFDLDLYW 833
             W+L ID +EIEDFT + G EE    ++ R EKS  + GWH IQF+GGK A + F L LY 
Sbjct:   790 WTLRIDMDEIEDFTMQVGEEEEEELMIERGEKSSNEEGWHQIQFAGGKKAPTSFVLKLYK 849

Query:   834 AKNSTESYHNANRKEKQRPLLKLRTDFDRLTPKTERVLSKLPAWCSLFGKSTSPQTLSFL 893
              +  ++       K+KQRPLLKLRTD +R TP+ +RVL +LP +C++FGKSTSP TL+FL
Sbjct:   850 EEEVSDD------KKKQRPLLKLRTDLNRRTPQVQRVLERLPPFCTMFGKSTSPFTLAFL 903

Query:   894 NSLP 897
              SLP
Sbjct:   904 ASLP 907

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

POMBASE\|SPCC1259.02c SPCC1259.02c "Endoplasmic Reticulum metallopeptidase 1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

FB\|FBgn0053012 CG33012 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|B3KSB1 ERMP1 "Endoplasmic reticulum metallopeptidase 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C3Q6 ERMP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MI95 ERMP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E7ER77 ERMP1 "Endoplasmic reticulum metallopeptidase 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7Z2K6 ERMP1 "Endoplasmic reticulum metallopeptidase 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:106250 Ermp1 "endoplasmic reticulum metallopeptidase 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PSG1 ERMP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00018186001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (900 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		900
cd03875		307	cd03875, M28_Fxna_like, M28 Zn-peptidase Endoplasm	1e-99
pfam04389		173	pfam04389, Peptidase_M28, Peptidase family M28	9e-35
cd02690		252	cd02690, M28, M28 Zn-peptidases include aminopepti	4e-13
cd05642		348	cd05642, M28_AAP_like, M28 Zn-Peptidase Aeromonas	2e-08
COG2234		435	COG2234, Iap, Predicted aminopeptidases [General f	1e-07
cd03877		254	cd03877, M28_like_PA, M28 Zn-Peptidases containing	2e-07
cd03896		359	cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspar	2e-07
cd08015		275	cd08015, M28_like_4, M28 Zn-Peptidases	2e-07
cd03876		288	cd03876, M28_SGAP_like, M28 Zn-peptidase Streptomy	3e-06
cd08656		281	cd08656, M28_like_6, M28 Zn-Peptidases	4e-06
cd05661		305	cd05661, M28_like_PA_2, M28 Zn-Peptidases containi	5e-06
cd05640		279	cd05640, M28_like_1, M28 Zn-Peptidases	9e-05
cd05660		306	cd05660, M28_like_PA_1, M28 Zn-Peptidases containi	1e-04
cd05662		267	cd05662, M28_like_2, M28 Zn-Peptidases	2e-04
cd05663		260	cd05663, M28_like_PA_PDZ_associated, M28 Zn-Peptid	2e-04
cd03873		237	cd03873, Zinc_peptidase_like, Zinc peptidases M18,	5e-04
cd03883		276	cd03883, M28_Pgcp_like, M28 Zn-Peptidase Plasma gl	7e-04
cd03879		285	cd03879, M28_AAP, M28 Zn-Peptidase Aeromonas (Vibr	0.002

>gnl\|CDD\|193497 cd03875, M28_Fxna_like, M28 Zn-peptidase Endoplasmic reticulum metallopeptidase 1	Back alignment and domain information

 Score =  312 bits (803), Expect = 1e-99
 Identities = 125/321 (38%), Positives = 167/321 (52%), Gaps = 42/321 (13%)

Query: 81  KRGFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKET--KHWEVDVEVDFF 138
              FSE  A  H++AL  +GPHP GS   D+   Y+    ++I        EV+V+ D+ 
Sbjct: 1   PEQFSEERAWSHLRALASIGPHPYGSANEDKVRDYLLERLEEIGGRASNSLEVEVQDDYG 60

Query: 139 HAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAG 198
              S           G T +Y +  +IV+RI  K      E A+L+++H D+V  + GA 
Sbjct: 61  SGSSD------FLGGGMTSVYFEGTNIVVRISGKNNGS--EGALLLNAHYDSVPTSPGAS 112

Query: 199 DCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVT------------- 245
           D  S VAVMLE+ RA+++     K  VIFLFN  EE GL GAH F+T             
Sbjct: 113 DDGSGVAVMLEVLRALAKSGEPPKRDVIFLFNGAEENGLLGAHGFITQHPWAKNVRAFIN 172

Query: 246 -------------QAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVA 292
                        Q GP PW VE +  AA +P   V AQD+F SG I S TDF+V++E  
Sbjct: 173 LEAAGAGGRAILFQTGPGPWLVEAYYKAAPHPFATVLAQDVFQSGLIPSDTDFRVFREYG 232

Query: 293 GLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLPKGNAMEKE 352
           GL GLD A+ +   VYHTK D  D + PGSLQH+GEN+LA L   A+S  L      E +
Sbjct: 233 GLPGLDIAFIENGYVYHTKYDTADHISPGSLQHMGENLLALLRYLANSDEL------END 286

Query: 353 GKTVHETAVYFDILGTYMVLY 373
            +     AVYFD+LG + V+Y
Sbjct: 287 SEYRGGDAVYFDLLGLFFVVY 307

Peptidase family M28; Endoplasmic reticulum metallopeptidase 1 (ERMP1; Felix-ina, FXNA or Fxna peptidase; KIAA1815) subfamily. ERMP1 is a multi-pass membrane protein located in the endoplasmic reticulum membrane. In humans, Fxna may play a crucial role in processing proteins required for the organization of somatic cells and oocytes into discrete follicular structures, although which proteins are hydrolyzed has not yet been determined. Another member of this cluster is the 24-kDa vacuolar protein (VP24) which is probably involved in the formation of intravacuolar pigmented globules (cyanoplasts) in highly anthocyanin-containing vacuoles; however, the biological function of the C-terminal region which includes the putative transmembrane metallopeptidase domain is unknown. Length = 307

>gnl\|CDD\|218057 pfam04389, Peptidase_M28, Peptidase family M28	Back alignment and domain information

>gnl\|CDD\|193493 cd02690, M28, M28 Zn-peptidases include aminopeptidases and carboxypeptidases	Back alignment and domain information

>gnl\|CDD\|193520 cd05642, M28_AAP_like, M28 Zn-Peptidase Aeromonas (Vibrio) proteolytica aminopeptidase (AAP)-like	Back alignment and domain information

>gnl\|CDD\|225143 COG2234, Iap, Predicted aminopeptidases [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|193499 cd03877, M28_like_PA, M28 Zn-Peptidases containing a PA domain insert	Back alignment and domain information

>gnl\|CDD\|193516 cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspartic acid) hydrolase-like proteins	Back alignment and domain information

>gnl\|CDD\|193563 cd08015, M28_like_4, M28 Zn-Peptidases	Back alignment and domain information

>gnl\|CDD\|193498 cd03876, M28_SGAP_like, M28 Zn-peptidase Streptomyces griseus Aminopeptidase and similar proteins	Back alignment and domain information

>gnl\|CDD\|193569 cd08656, M28_like_6, M28 Zn-Peptidases	Back alignment and domain information

>gnl\|CDD\|193537 cd05661, M28_like_PA_2, M28 Zn-Peptidases containing a PA domain insert	Back alignment and domain information

>gnl\|CDD\|193519 cd05640, M28_like_1, M28 Zn-Peptidases	Back alignment and domain information

>gnl\|CDD\|193536 cd05660, M28_like_PA_1, M28 Zn-Peptidases containing a PA domain insert	Back alignment and domain information

>gnl\|CDD\|193538 cd05662, M28_like_2, M28 Zn-Peptidases	Back alignment and domain information

>gnl\|CDD\|193539 cd05663, M28_like_PA_PDZ_associated, M28 Zn-Peptidases containing a PA domain insert and associated with a PDZ domain	Back alignment and domain information

>gnl\|CDD\|193495 cd03873, Zinc_peptidase_like, Zinc peptidases M18, M20, M28, and M42	Back alignment and domain information

>gnl\|CDD\|193504 cd03883, M28_Pgcp_like, M28 Zn-Peptidase Plasma glutamate carboxypeptidase	Back alignment and domain information

>gnl\|CDD\|193500 cd03879, M28_AAP, M28 Zn-Peptidase Aeromonas (Vibrio) proteolytica aminopeptidase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		900
KOG2194		834	consensus Aminopeptidases of the M20 family [Postt	100.0
PRK10199		346	alkaline phosphatase isozyme conversion aminopepti	99.91
PF04389		179	Peptidase_M28: Peptidase family M28; InterPro: IPR	99.9
KOG2195		702	consensus Transferrin receptor and related protein	99.81
KOG3946		338	consensus Glutaminyl cyclase [Posttranslational mo	99.73
TIGR03176		406	AllC allantoate amidohydrolase. This enzyme cataly	99.54
COG2234		435	Iap Predicted aminopeptidases [General function pr	99.44
PRK12891		414	allantoate amidohydrolase; Reviewed	99.43
PRK12890		414	allantoate amidohydrolase; Reviewed	99.42
PRK13590		591	putative bifunctional OHCU decarboxylase/allantoat	99.42
PRK13799		591	unknown domain/N-carbamoyl-L-amino acid hydrolase	99.41
TIGR01879		401	hydantase amidase, hydantoinase/carbamoylase famil	99.4
PRK09290		413	allantoate amidohydrolase; Reviewed	99.35
PRK12892		412	allantoate amidohydrolase; Reviewed	99.3
PRK12893		412	allantoate amidohydrolase; Reviewed	99.29
PRK09133		472	hypothetical protein; Provisional	99.25
PRK06133		410	glutamate carboxypeptidase; Reviewed	99.24
PRK08596		421	acetylornithine deacetylase; Validated	99.19
PRK07473		376	carboxypeptidase; Provisional	99.17
PRK07906		426	hypothetical protein; Provisional	99.14
TIGR01910		375	DapE-ArgE acetylornithine deacetylase or succinyl-	99.14
PRK08588		377	succinyl-diaminopimelate desuccinylase; Reviewed	99.14
PRK08262		486	hypothetical protein; Provisional	99.13
TIGR01893		477	aa-his-dipept aminoacyl-histidine dipeptidase.	99.1
PRK07338		402	hypothetical protein; Provisional	99.07
TIGR01883		361	PepT-like peptidase T-like protein. This model rep	99.06
PRK13983		400	diaminopimelate aminotransferase; Provisional	99.05
PRK05469		408	peptidase T; Provisional	99.04
TIGR01880		400	Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase	99.03
PRK06837		427	acetylornithine deacetylase; Provisional	99.03
PRK13381		404	peptidase T; Provisional	99.02
PRK13013		427	succinyl-diaminopimelate desuccinylase; Reviewed	99.01
PRK09104		464	hypothetical protein; Validated	99.0
PRK06915		422	acetylornithine deacetylase; Validated	98.99
PRK04443		348	acetyl-lysine deacetylase; Provisional	98.99
PRK07907		449	hypothetical protein; Provisional	98.98
PRK06446		436	hypothetical protein; Provisional	98.98
PRK07522		385	acetylornithine deacetylase; Provisional	98.97
PRK13009		375	succinyl-diaminopimelate desuccinylase; Reviewed	98.97
PRK07318		466	dipeptidase PepV; Reviewed	98.97
TIGR01882		410	peptidase-T peptidase T. This model represents a t	98.95
PRK07205		444	hypothetical protein; Provisional	98.95
PRK08201		456	hypothetical protein; Provisional	98.94
TIGR01892		364	AcOrn-deacetyl acetylornithine deacetylase (ArgE).	98.94
PRK08652		347	acetylornithine deacetylase; Provisional	98.92
PRK05111		383	acetylornithine deacetylase; Provisional	98.91
PRK15026		485	aminoacyl-histidine dipeptidase; Provisional	98.9
PRK00466		346	acetyl-lysine deacetylase; Validated	98.89
PRK07079		469	hypothetical protein; Provisional	98.88
TIGR01886		466	dipeptidase dipeptidase PepV. This model represent	98.88
COG1363		355	FrvX Cellulase M and related proteins [Carbohydrat	98.88
PRK08651		394	succinyl-diaminopimelate desuccinylase; Reviewed	98.85
PRK13004		399	peptidase; Reviewed	98.83
PF01546		189	Peptidase_M20: Peptidase family M20/M25/M40 This f	98.83
PRK13007		352	succinyl-diaminopimelate desuccinylase; Reviewed	98.82
COG0624		409	ArgE Acetylornithine deacetylase/Succinyl-diaminop	98.78
PF05450		234	Nicastrin: Nicastrin; InterPro: IPR008710 Nicastri	98.78
KOG2275		420	consensus Aminoacylase ACY1 and related metalloexo	98.77
TIGR01246		370	dapE_proteo succinyl-diaminopimelate desuccinylase	98.76
TIGR01887		447	dipeptidaselike dipeptidase, putative. This model	98.76
TIGR01902		336	dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine d	98.73
PRK06156		520	hypothetical protein; Provisional	98.72
PRK08554		438	peptidase; Reviewed	98.68
TIGR01891		363	amidohydrolases amidohydrolase. This model represe	98.68
TIGR03320		395	ygeY M20/DapE family protein YgeY. Members of this	98.64
TIGR03106		343	trio_M42_hydro hydrolase, peptidase M42 family. Th	98.6
TIGR03526		395	selenium_YgeY putative selenium metabolism hydrola	98.6
PRK09961		344	exoaminopeptidase; Provisional	98.59
TIGR01900		373	dapE-gram_pos succinyl-diaminopimelate desuccinyla	98.59
TIGR03107		350	glu_aminopep glutamyl aminopeptidase. This model r	98.53
PRK08737		364	acetylornithine deacetylase; Provisional	98.48
PLN02280		478	IAA-amino acid hydrolase	98.48
PRK09864		356	putative peptidase; Provisional	98.48
COG4882		486	Predicted aminopeptidase, Iap family [General func	98.47
PLN02693		437	IAA-amino acid hydrolase	98.46
KOG2526		555	consensus Predicted aminopeptidases - M20/M25/M40	98.43
PF09940		386	DUF2172: Domain of unknown function (DUF2172); Int	98.08
COG4187		553	RocB Arginine degradation protein (predicted deacy	97.83
KOG2276		473	consensus Metalloexopeptidases [Amino acid transpo	97.61
PF05343		292	Peptidase_M42: M42 glutamyl aminopeptidase; InterP	97.03
COG4310		435	Uncharacterized protein conserved in bacteria with	96.58
COG2195		414	PepD Di- and tripeptidases [Amino acid transport a	96.34
KOG2657		596	consensus Transmembrane glycoprotein nicastrin [Si	96.17
COG1473		392	AbgB Metal-dependent amidase/aminoacylase/carboxyp	95.21
PF04114		504	Gaa1: Gaa1-like, GPI transamidase component ; Inte	89.27

>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=7.1e-128  Score=1127.05  Aligned_cols=761  Identities=30%  Similarity=0.492  Sum_probs=649.7

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhhhccccccCCCCCCccc--cCCCCCCHHHHHHHHHHHHhcCCCCCCCHHHH-HHHHHH
Q 002613           40 SAKRSGLAWTVAFAAFVYATYGVYYYQYEHMPPPLTADQ--AGKRGFSEFEAIKHVKALTELGPHPVGSDALD-RALQYV  116 (900)
Q Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~~~~~~~--~~~~~fs~erA~~~L~~L~~igpr~~GS~~~~-~a~~yL  116 (900)
                      +.+|....++..+.++....  ++.+.++++|.|++..+  ..+++|+++||++++++|+++|||++||++|+ .+++|+
T Consensus        10 ~~~r~~~~~~~~~~f~~~~~--~~~~~~~~~~~pl~~~~e~~~~~~f~~~rA~~~l~~ls~~G~~~~gS~~ne~~a~~~i   87 (834)
T KOG2194|consen   10 KRKRNGAPCLAHLIFLLSIA--IVLYLFDHLPEPLTQPQEQTLPSQFSEARALKDLLSLSAAGPHPVGSDNNEMHASSFI   87 (834)
T ss_pred             hhhhccchHHHHHHHHHHHH--HHHHHHhhccccCCCcchhcCchhhHHHHHHHHHHHHHhcCCcccCchhhHHHHHHHH
Confidence            34444444444444443333  33345566777666444  44789999999999999999999999999997 999999


Q ss_pred             HHHHHhhccccCCc-ceEEEEeeeccCCccccccccc--ccccccccccceEEEEEcCCCCCcCCCCEEEEEeecccccC
Q 002613          117 FAAAQKIKETKHWE-VDVEVDFFHAKSGANRLVSGAF--MGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA  193 (900)
Q Consensus       117 ~~~l~~ig~~~~~~-~~v~vd~f~~~~g~~~~~gg~~--~~~~~~y~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~  193 (900)
                      ++|+++++++++.+ .++|+|.+..        +|.+  ++++++|++++||++|+.+|+  +.++.++|++|||||||+
T Consensus        88 l~e~~~i~~~~~~~~~~~Evd~q~~--------sg~~~~~~~~~~Y~~i~NIvVki~~k~--~~~~~~lLlnaHfDSvpt  157 (834)
T KOG2194|consen   88 LKEVNKIRKGSQSDLYDMEVDLQSA--------SGSFILEGMTLVYQNISNIVVKISPKN--GNDKNALLLNAHFDSVPT  157 (834)
T ss_pred             HHHHHHHHhhhhcchhhheeceeec--------cceeeehhhhheeeeeeeEEEecCCCC--CCccceeeeeccccccCC
Confidence            99999999877664 5677776543        3333  678999999999999999984  345569999999999999


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCcchHHHHHc--------------------------c
Q 002613          194 AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ--------------------------A  247 (900)
Q Consensus       194 spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL~GS~~fi~~--------------------------~  247 (900)
                      +|||+|||+|||+|||++|++++..+..+|+|+|+||+|||.+|+|||+|++|                          +
T Consensus       158 ~~gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLfNgaEE~~L~gsH~FItQH~w~~~~ka~INLea~GsGGreiLFQa  237 (834)
T KOG2194|consen  158 GPGATDDGSGVASMLEALRVLSKSDKLLTHSVVFLFNGAEESGLLGSHAFITQHPWSKNIKAVINLEAAGSGGREILFQA  237 (834)
T ss_pred             CCCCCcchhHHHHHHHHHHHhhcCCCcccccEEEEecCcccchhhhcccceecChhhhhhheEEeccccCcccceeEEec
Confidence            99999999999999999999999888889999999999999999999999997                          5


Q ss_pred             CCChhHHHHHHHhcCCCCcchhhhhhhhcCCCCCCCchHHHhhcCCCcEEEEeecCCCCCCCCCCCCcCCCCHHHHHHHH
Q 002613          248 GPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLG  327 (900)
Q Consensus       248 Gp~~~li~~y~~~a~~P~~~~l~~~~f~~g~ips~TD~~~F~~~~giPgld~a~~~~~~~YHT~~Dt~~~i~~~slq~~g  327 (900)
                      ||++|+++.|.++++||++++++||+||+|+|||||||++|++|+|+||+|+|+..|++.|||++|.++++.++++||+|
T Consensus       238 gp~~wl~k~Y~~~~phPf~stlgee~Fq~g~IpSdTDfrif~eyg~l~GLD~A~~~Ng~vYHTk~D~~~~i~~gs~q~tG  317 (834)
T KOG2194|consen  238 GPNHWLLKAYLQAAPHPFASTLGEELFQSGIIPSDTDFRIFREYGHLPGLDMAFVKNGYVYHTKYDGIQYIPPGSLQHTG  317 (834)
T ss_pred             CCchHHHHHHHhhCCCchhhhhHHHhhhcCcCccccchHHHHHhCCcccceeeeeeccceEEeecccccccCcchhhhhh
Confidence            67669999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCccccCCCCCCCeEEeeccCceEEEEechhHHHHHHHHHHHHHHHHHHHHhccchhhHHH
Q 002613          328 ENMLAFLLQAASSTSLPKGNAMEKEGKTVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVS  407 (900)
Q Consensus       328 ~~~l~lv~~la~s~~l~~~~~~~~~~~~~~~~~VyFD~~G~~~v~y~~~~~~~l~~~v~~~~lll~~~sl~~~~~~~l~~  407 (900)
                      +|++++++.++|+ ++.+      .++.+++ +||||++|++|+.|+++++++||+.++   +.++ ....+.+.+.+++
T Consensus       318 en~L~~v~~lan~-el~~------~~~~~~g-~vyfdv~g~~~~~y~~~~~~iLNi~i~---~~i~-l~~~~~g~~~~~~  385 (834)
T KOG2194|consen  318 ENILALVRSLANS-ELDN------STERSKG-TVYFDVVGKYFLAYSESTGVILNITIC---ISIW-LMSLRSGSSQLGK  385 (834)
T ss_pred             hHHHHHHHHHhch-hhcc------ccccCCC-ceehhhhhhhhheeehhhhhhhhhhhh---hhhh-hhhhcccchhhhh
Confidence            9999999999999 5542      3456677 999999999999999999999993322   2222 3344544446889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccC
Q 002613          408 LALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANPWLAVGLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQL  487 (900)
Q Consensus       408 ~~~~~~~~~l~~~~~~~~~~~vA~~~~~~~~~~~sw~s~~~l~igLy~~pa~~g~~~~~~l~~~~~~~~~~~~~~~~~~l  487 (900)
                      ++++|+.+++++++++++++++|++++.++ .+|+||++||+++|+|.||+++|+.+++.++...    .+     +.++
T Consensus       386 f~~~~~~~i~s~~~~~~l~~~~a~~l~~v~-l~~sw~s~p~l~~~ly~~p~~~gl~~~~~~y~~~----~~-----~~~~  455 (834)
T KOG2194|consen  386 FILACLLQILSIVVAIGLPVLVALFLDWVG-LPLSWFSNPWLLLGLYYLPSLFGLAILQALYAKR----SK-----RHSL  455 (834)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhccc-ccceeecchHHHHHHHHhHHHHHhhHHHHHHHhh----cc-----cccc
Confidence            999999999999999999999999999994 6999999999999999999999999999873211    11     1111


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHH
Q 002613          488 SPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFPRPLKLATLLLGLA  567 (900)
Q Consensus       488 ~~~~~~~~~~l~~~~~~~~a~~~~w~ll~i~~t~~~i~SaY~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~  567 (900)
                              ..++.+++++|+   +|++|++++|+++|||+|++++|+++|+++  +++++..++|.++..|..++++||+
T Consensus       456 --------~~~~~~ql~~h~---~l~~l~~~~t~y~I~S~y~~~~~~~~~v~~--~~~~~~~~l~~~~~~~~~~~~i~~~  522 (834)
T KOG2194|consen  456 --------EYLQHDQLLLHS---LLSILLIIMTYYGIRSAYLPLLLLLFYVIS--YLLNTLTILHLCGTLYLITLLICQV  522 (834)
T ss_pred             --------chhhHHHHHHHH---HHHHHHHHheecccchhHHHHHHHHHHHHH--HHHhhceeeccCCceeeeeeeeeeh
Confidence                    113556677776   788899999999999999999999999999  5677888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Q 002613          568 VPVLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIASCVLFVLSL  647 (900)
Q Consensus       568 ~P~l~~~~~~~~~~~v~ip~~gR~g~~~~~~P~~l~d~iIa~~~a~~~~l~~~~l~P~i~~~~~~~~i~~~l~~v~~~~~  647 (900)
                      .|+.+.+|.+++++.+|+|||||+|.+.  |||    .+||.++++++.+.++|++|++|+||+++.++.+++.++.+++
T Consensus       523 ~p~~~~ay~~~~~~~~fipm~Gr~g~~~--nPd----~~i~~~~~~~~~l~~~f~i~l~~~fr~~~~i~~~l~~I~~~~~  596 (834)
T KOG2194|consen  523 GPFLFAAYSTYSLVRTFIPMMGRFGNAS--NPD----LSISFLNAFGANLIVGFLIPLVHLFRRSKSIILGLFGITAVIL  596 (834)
T ss_pred             HhHHHHHHHHHHHHHeeeccccccCCCC--Cch----HHHHHHHHHHHHhhHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Confidence            9999999999999999999999999755  996    9999999999999999999999999999999998988888888


Q ss_pred             HHHhhCCCCCCCCCC-ccceEEEEEEecCCCCCCC---CCCCceeeccccCCC--------CchhHH---HhccCccccC
Q 002613          648 ILVLSGTVPPFSEDT-ARAVNVVHVVDASGKFGGK---QEPSSFIALYSTTPG--------KLTKEV---EQIKEGFVCG  712 (900)
Q Consensus       648 ~~~~~~~~fPf~~~~-~~r~~~~h~~~~~~~~~~~---~d~~~~~~l~~~~~~--------~l~~~~---~~c~~e~~Cg  712 (900)
                      .+++|.++|||+.++ +||++++|++|+.+++.+.   +|+++++...|....        ++++++   .+|+.+++||
T Consensus       597 ~i~~T~~~fPy~~~~~~~r~~~lH~~rtf~~~~~~~~~~ds~~~i~~~D~r~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  676 (834)
T KOG2194|consen  597 IIASTSIGFPYRPKTTVQRVPVLHVRRTFYDRDGTSSQNDSGYFINSQDRRGAEVLPFTKSNLTDLSSVQADCDDEMMCG  676 (834)
T ss_pred             HHHhcCCcCCccccccceeEEEEecccceecccCceeecccceeeeecccccccCCcchhhcccccccccccccccccCC
Confidence            778899999999875 5799999999999887766   788888887765532        334444   5689999999


Q ss_pred             CccccccccccccceeeeecCCCCccCCCCCC-------cccccccccccccccccCCCceEEEEEEecCCCeEEEEEec
Q 002613          713 RDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVP-------TIHVESEGFGIMDTKGNDNGRITKVSIDMKGSVRWSLAIDA  785 (900)
Q Consensus       713 ~~~~~~~~~~p~y~~~~~~~~~~~~Wlp~~~P-------~l~~~~~~~~~~~~k~~~~~~~~r~~f~~~g~~~~sl~I~p  785 (900)
                      +         |+|+  |.+.+.+++|+|+++|       .+.+++|+       . .++++.|++|++.|++||++||+|
T Consensus       677 ~---------p~y~--w~~~~~~~~~vp~~~~v~~~~~~~l~l~sk~-------~-~~~~~~r~~~~i~~~d~~s~~i~p  737 (834)
T KOG2194|consen  677 M---------PVYN--WIKPREQSLWVPNPEPVIGPYPPNLKLLSKT-------S-LDNGNLRYEFSITGTDHISLFISP  737 (834)
T ss_pred             c---------eeee--ccccCccceEecCCccccCCCCceEEEeecc-------c-cCCCceEEEEEEeccCceEEEEEe
Confidence            9         7997  9999999999999876       45555554       3 446689999999999999999999


Q ss_pred             ---eeecceeeccCCcccccCCcCCCCCCcEEEEEEcC-CCCceEEEEEEEeccCCcccccccccccCCCCeEEEe----
Q 002613          786 ---EEIEDFTFKEGSEELVPRDEKSGMDGWHIIQFSGG-KNAVSKFDLDLYWAKNSTESYHNANRKEKQRPLLKLR----  857 (900)
Q Consensus       786 ---~~i~~WSf~~~~~~~~~~~~~~~~~~~~~i~~s~G-~~~P~~F~lel~~~~~~~~~~~~~~~~~~~~p~~~l~----  857 (900)
                         +++.+|||.++   +  ..+  + ..+|+||++|| ++.|++||||+++.           ++++++| +|++    
T Consensus       738 ~~d~~~~~wsf~~~---~--~~~--~-~~~~~i~~~yg~~~~p~~F~lel~~~-----------~~~~~v~-~k~~~~~h  797 (834)
T KOG2194|consen  738 LNDVKVLDWSFTTS---P--LTE--N-KTPYHIYFSYGLDSTPLNFWLELEKE-----------EGVTDVP-FKLGVSAH  797 (834)
T ss_pred             cCCceEEEEeccCC---c--ccc--c-CCceEEEEEeecCCCCceEEEEEeec-----------cCccCCc-eEEeeeee
Confidence               59999999644   4  333  2 22699999999 89999999999998           5688888 8888    


Q ss_pred             --ccccCCCHHHHHHHhcCCCcccccCCCCCcchhhh
Q 002613          858 --TDFDRLTPKTERVLSKLPAWCSLFGKSTSPQTLSF  892 (900)
Q Consensus       858 --~~~~~~t~~~~~fl~~fP~wa~~~g~~~s~~~~~~  892 (900)
                        +|.+++||++++|+++||+||..++|++|+....|
T Consensus       798 ~~~~~~~~t~~~~~~~~~lP~~~~~~~~~~~~~~~~~  834 (834)
T KOG2194|consen  798 YIHDLELITPEYKEFLETLPSWAATVDWSTSYESWIF  834 (834)
T ss_pred             eccchhhcCHHHHHHHHhCCchhhccccccchhheeC
Confidence              47889999999999999999999999999987654

>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional	Back alignment and domain information

>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]	Back alignment and domain information

>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR03176 AllC allantoate amidohydrolase	Back alignment and domain information

>COG2234 Iap Predicted aminopeptidases [General function prediction only]	Back alignment and domain information

>PRK12891 allantoate amidohydrolase; Reviewed	Back alignment and domain information

>PRK12890 allantoate amidohydrolase; Reviewed	Back alignment and domain information

>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional	Back alignment and domain information

>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional	Back alignment and domain information

>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family	Back alignment and domain information

>PRK09290 allantoate amidohydrolase; Reviewed	Back alignment and domain information

>PRK12892 allantoate amidohydrolase; Reviewed	Back alignment and domain information

>PRK12893 allantoate amidohydrolase; Reviewed	Back alignment and domain information

>PRK09133 hypothetical protein; Provisional	Back alignment and domain information

>PRK06133 glutamate carboxypeptidase; Reviewed	Back alignment and domain information

>PRK08596 acetylornithine deacetylase; Validated	Back alignment and domain information

>PRK07473 carboxypeptidase; Provisional	Back alignment and domain information

>PRK07906 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase	Back alignment and domain information

>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>PRK08262 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase	Back alignment and domain information

>PRK07338 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01883 PepT-like peptidase T-like protein	Back alignment and domain information

>PRK13983 diaminopimelate aminotransferase; Provisional	Back alignment and domain information

>PRK05469 peptidase T; Provisional	Back alignment and domain information

>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase	Back alignment and domain information

>PRK06837 acetylornithine deacetylase; Provisional	Back alignment and domain information

>PRK13381 peptidase T; Provisional	Back alignment and domain information

>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>PRK09104 hypothetical protein; Validated	Back alignment and domain information

>PRK06915 acetylornithine deacetylase; Validated	Back alignment and domain information

>PRK04443 acetyl-lysine deacetylase; Provisional	Back alignment and domain information

>PRK07907 hypothetical protein; Provisional	Back alignment and domain information

>PRK06446 hypothetical protein; Provisional	Back alignment and domain information

>PRK07522 acetylornithine deacetylase; Provisional	Back alignment and domain information

>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>PRK07318 dipeptidase PepV; Reviewed	Back alignment and domain information

>TIGR01882 peptidase-T peptidase T	Back alignment and domain information

>PRK07205 hypothetical protein; Provisional	Back alignment and domain information

>PRK08201 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE)	Back alignment and domain information

>PRK08652 acetylornithine deacetylase; Provisional	Back alignment and domain information

>PRK05111 acetylornithine deacetylase; Provisional	Back alignment and domain information

>PRK15026 aminoacyl-histidine dipeptidase; Provisional	Back alignment and domain information

>PRK00466 acetyl-lysine deacetylase; Validated	Back alignment and domain information

>PRK07079 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01886 dipeptidase dipeptidase PepV	Back alignment and domain information

>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>PRK13004 peptidase; Reviewed	Back alignment and domain information

>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]	Back alignment and domain information

>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch	Back alignment and domain information

>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade	Back alignment and domain information

>TIGR01887 dipeptidaselike dipeptidase, putative	Back alignment and domain information

>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase	Back alignment and domain information

>PRK06156 hypothetical protein; Provisional	Back alignment and domain information

>PRK08554 peptidase; Reviewed	Back alignment and domain information

>TIGR01891 amidohydrolases amidohydrolase	Back alignment and domain information

>TIGR03320 ygeY M20/DapE family protein YgeY	Back alignment and domain information

>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family	Back alignment and domain information

>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase	Back alignment and domain information

>PRK09961 exoaminopeptidase; Provisional	Back alignment and domain information

>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase	Back alignment and domain information

>TIGR03107 glu_aminopep glutamyl aminopeptidase	Back alignment and domain information

>PRK08737 acetylornithine deacetylase; Provisional	Back alignment and domain information

>PLN02280 IAA-amino acid hydrolase	Back alignment and domain information

>PRK09864 putative peptidase; Provisional	Back alignment and domain information

>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]	Back alignment and domain information

>PLN02693 IAA-amino acid hydrolase	Back alignment and domain information

>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]	Back alignment and domain information

>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis	Back alignment and domain information

>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]	Back alignment and domain information

>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]	Back alignment and domain information

>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]	Back alignment and domain information

>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]	Back alignment and domain information

>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]	Back alignment and domain information

>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		900
2ek8_A		421	Aminopeptidase From Aneurinibacillus Sp. Strain Am-		3e-04

>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 Length = 421

Back alignment and structure

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 163 NHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFK 222
           ++++   +P    +   + I++ SH D+V  A GA D +S VAV LELAR MS+      
Sbjct: 204 HNVIATKKPDANKKNTNDIIIIGSHHDSVEKAPGANDDASGVAVTLELARVMSKLK--TD 261
Query: 223 NAVIFLFNTGEEEGLNGAHSF 243
             + F+    EE GL G+  +
Sbjct: 262 TELRFITFGAEENGLIGSKKY 282

PyMOL of 2ek8

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		900
3tc8_A		309	Leucine aminopeptidase; phosphorylase/hydrolase-li	1e-21
3gux_A		314	Putative Zn-dependent exopeptidase; aminopeptidase	5e-21
3pb6_X		330	Glutaminyl-peptide cyclotransferase-like protein;	3e-14
2ek8_A		421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	5e-14
1tkj_A		284	Aminopeptidase, SGAP; double-zinc metalloproteinas	2e-13
2afw_A		329	Glutaminyl-peptide cyclotransferase; alpha-beta pr	2e-11
1rtq_A		299	Bacterial leucyl aminopeptidase; bimetallic, zinc,	5e-11
3iib_A		444	Peptidase M28; YP_926796.1, structural genomics, J	1e-09
3kas_A		640	Transferrin receptor protein 1; transferrin recept	5e-09
1cg2_A		393	Carboxypeptidase G2; metallocarboxypeptidase, hydr	3e-08
3fed_A		707	Glutamate carboxypeptidase III; metallopeptidase,	3e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
3rza_A		396	Tripeptidase; phosphorylase/hydrolase-like, struct	1e-05
3gb0_A		373	Peptidase T; NP_980509.1, aminopeptidase PEPT, pep	5e-05
3ct9_A		356	Acetylornithine deacetylase; NP_812461.1, A putati	4e-04

>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} Length = 309	Back alignment and structure

 Score = 95.9 bits (238), Expect = 1e-21
 Identities = 48/312 (15%), Positives = 85/312 (27%), Gaps = 88/312 (28%)

Query: 84  FSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSG 143
           F+   A  +V      GP    + A      Y+        E K +   V        + 
Sbjct: 22  FNADSAYAYVANQVAFGPRVPNTAAHKACGDYL------ASELKRFGAKVYQQEAILTAY 75

Query: 144 ANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAE-------- 195
               +                I+    P+         +L+ +H D+   ++        
Sbjct: 76  DGTKLEARN------------IIGSFDPE-----NSKRVLLFAHWDSRPYSDHDPDPSKH 118

Query: 196 -----GAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLN------------ 238
                GA D  S V  +LE+AR + Q A      +  +F   E+ G              
Sbjct: 119 RTPLDGADDGGSGVGALLEIARQIGQKAP--GIGIDIIFFDAEDYGTPEFVTDYTPDSWC 176

Query: 239 -GAHSFVTQAGPHPWAVENF----------AAAAKYPSGQVTAQDLFAS----------- 276
            G   +        +  E            A   K       A  +              
Sbjct: 177 LGTQFWAKNPHVPNYTAEYGILLDMVGGKNATFFKEQQSLRAAAPIVEMVWSAARDLGYG 236

Query: 277 --------GAITSATDFQVYKEVAGLSGLDFAYTDKSA------VYHTKNDKLDLLKPGS 322
                   GAIT   D Q       +  +D    D  +       +HT+ D ++ +   +
Sbjct: 237 KYFINAAGGAITD--DHQYVISGRNIPSIDIINYDPESKTGFASYWHTQKDNMENIDRET 294

Query: 323 LQHLGENMLAFL 334
           L+  G+ +L  +
Sbjct: 295 LKAAGQTVLEVI 306

PyMOL of 3tc8

>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} Length = 314	Back alignment and structure

>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X* Length = 330	Back alignment and structure

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Length = 421	Back alignment and structure

>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A Length = 284	Back alignment and structure

>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ... Length = 329	Back alignment and structure

>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... Length = 299	Back alignment and structure

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Length = 444	Back alignment and structure

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Length = 640	Back alignment and structure

>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Length = 393	Back alignment and structure

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Length = 707	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} Length = 396	Back alignment and structure

>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987} Length = 373	Back alignment and structure

>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Length = 356	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		900
d2afwa1		329	c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransf	7e-20
d1rtqa_		291	c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolyti	7e-17
d3bi1a3		304	c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypep	2e-16
d1de4c3		294	c.56.5.5 (C:122-189,C:383-608) Transferrin recepto	1e-13
d2grea2		233	c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptid	1e-04
d1tkja1		277	c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces gr	2e-04
d1r3na1		322	c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-	0.002

>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} Length = 329	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Glutaminyl-peptide cyclotransferase-like
domain: Glutaminyl-peptide cyclotransferase, QPCT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.5 bits (221), Expect = 7e-20
 Identities = 52/341 (15%), Positives = 108/341 (31%), Gaps = 93/341 (27%)

Query: 66  QYEHMPPPLTADQAGKRGFSEFEAIKHVKALTE--LGPHPVGSDALDRALQYVFAAAQKI 123
           +  H P  L +    ++        +  +   +  L     GS     A Q++    Q++
Sbjct: 8   KNYHQPAILNSSAL-RQIAEGTSISEMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRL 66

Query: 124 KETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAENAIL 183
           +     +  +E+D F +++                Y   ++I+  + P      A+  ++
Sbjct: 67  Q----ADWVLEIDTFLSQTPYG-------------YRSFSNIISTLNPT-----AKRHLV 104

Query: 184 VSSHIDTVFAAE-------GAGDCSSCVAVMLELARAMSQW--------AHGFKNAVIFL 228
           ++ H D+ + +        GA D +   A+MLELARA+ +               ++  +
Sbjct: 105 LACHYDSKYFSHWNNRVFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLI 164

Query: 229 FNTGEEEG--------LNGAHSFVTQAG--PHPWAVENFAAAAKYPSG-----QVTAQDL 273
           F  GEE          L G+     +    PHP      +                    
Sbjct: 165 FFDGEEAFLHWSPQDSLYGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPT 224

Query: 274 FASGAITSATDFQVYKEV--------------------------------------AGLS 295
           F +    SA  F+  + +                                       G+ 
Sbjct: 225 FPNFFPNSARWFERLQAIEHELHELGLLKDHSLEGRYFQNYSYGGVIQDDHIPFLRRGVP 284

Query: 296 GLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQ 336
            L    +    V+HT +D  + L   ++ +L + +  F+L+
Sbjct: 285 VLHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVFVLE 325

PyMOL of d2afwa1

>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Length = 291	Back information, alignment and structure

>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} Length = 304	Back information, alignment and structure

>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 294	Back information, alignment and structure

>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} Length = 233	Back information, alignment and structure

>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} Length = 277	Back information, alignment and structure

>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 322	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		900
d2afwa1		329	Glutaminyl-peptide cyclotransferase, QPCT {Human (	100.0
d1tkja1		277	Aminopeptidase {Streptomyces griseus [TaxId: 1911]	100.0
d1rtqa_		291	Aminopeptidase {Aeromonas proteolytica [TaxId: 671	100.0
d3bi1a3		304	Glutamate carboxypeptidase II FOLH1 {Human (Homo s	100.0
d1de4c3		294	Transferrin receptor ectodomain, protease-like dom	100.0
d1vhoa2		248	Putative endoglucanase TM1048, catalytic domain {T	99.78
d1yloa2		264	Aminopeptidase YpdE {Shigella flexneri [TaxId: 623	99.78
g1q7l.1		280	Aminoacylase-1, catalytic domain {Human (Homo sapi	99.77
d1z2la1		293	Allantoate amidohydrolase AllC catalytic domain {E	99.77
d1cg2a1		276	Carboxypeptidase G2, catalytic domain {Pseudomonas	99.75
d1vhea2		275	Hypothetical protein YsdC, catalytic domain {Bacil	99.74
d2fvga2		255	Endoglucanase TM1049 {Thermotoga maritima [TaxId:	99.68
d1r3na1		322	Peptidase-like beta-alanine synthase, catalytic do	99.66
d2grea2		233	Deblocking aminopeptidase YhfE {Bacillus cereus [T	99.62
d1fnoa4		295	Peptidase T (tripeptidase), catalytic domain {Salm	99.62
d1vgya1		262	Succinyl-diaminopimelate desuccinylase, catalytic	99.3
d1lfwa1		272	Aminopeptidase PepV {Lactobacillus delbrueckii [Ta	99.26
d1ysja1		261	Protein YxeP {Bacillus subtilis [TaxId: 1423]}	98.35
d1xmba1		273	IAA-amino acid hydrolase, catalytic domain {Mouse-	98.32
d1y0ya2		255	Frv operon protein FrvX, catalytic domain {Pyrococ	98.05
d1y7ea2		322	Probable aminopeptidase ApeA {Borrelia burgdorferi	93.27

>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Glutaminyl-peptide cyclotransferase-like
domain: Glutaminyl-peptide cyclotransferase, QPCT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-35  Score=264.00  Aligned_cols=243  Identities=22%  Similarity=0.298  Sum_probs=171.9

Q ss_pred             CCCCCCCCCCC--CCCCCHHHHHH-HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf             99998745359--99999999999-9999882699999998899999999999995110147840189996623578632
Q 002613           70 MPPPLTADQAG--KRGFSEFEAIK-HVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANR  146 (900)
Q Consensus        70 lP~~~~~~~~~--~~~fs~erA~~-~L~~Lt~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~~~~~~g~~~  146 (900)
                      -|+.++.++..  +.+.+.++.++ +|+.+  ++||+.||++++++++||++++++++.    +.+++.+.|..+.    
T Consensus        12 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--l~pR~~Gs~g~~~a~~~i~~~~~~~g~----~~~~~~~~f~~~~----   81 (329)
T d2afwa1          12 QPAILNSSALRQIAEGTSISEMWQNDLQPL--LIERYPGSPGSYAARQHIMQRIQRLQA----DWVLEIDTFLSQT----   81 (329)
T ss_dssp             CCCCCCHHHHHHHHHHCCHHHHHHHTTGGG--CSCCCTTSHHHHHHHHHHHHHHHTSSS----CCEEEEEEEEECC----
T ss_pred             CCCCCCHHHHHHHHHCCCHHHHHHHHHHHH--HCCCCCCCHHHHHHHHHHHHHHHHHCC----CCEEEEEEEEECC----
T ss_conf             888789999999875069899999854675--089798897999999999999998579----9727888888545----


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHC--
Q ss_conf             334544562011145246999982788785798879998304665699-------99889810799999999999852--
Q 002613          147 LVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAA-------EGAGDCSSCVAVMLELARAMSQW--  217 (900)
Q Consensus       147 ~~gg~~~~~~~~y~~~~NViv~i~g~~~~~~~~~~ILl~aH~DSv~~s-------pGA~DdgsGVA~lLE~aR~L~~~--  217 (900)
                               ...+.+..|||++++|+     ++++|+|+|||||++.+       |||+|||+|||+|||+||+|++.  
T Consensus        82 ---------~~~~~~~~Nvia~l~g~-----~~~~ili~aHyDs~~~~~~~~~~~pGA~DnaSGvA~lLElAR~l~~~~~  147 (329)
T d2afwa1          82 ---------PYGYRSFSNIISTLNPT-----AKRHLVLACHYDSKYFSHWNNRVFVGATDSAVPCAMMLELARALDKKLL  147 (329)
T ss_dssp             ---------TTSSEEEEEEEEESSTT-----SSEEEEEEEECCCCCCCCBTTBCCCCTTTTHHHHHHHHHHHHHTHHHHH
T ss_pred             ---------CCCCCEEEEEEEEECCC-----CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             ---------56883468999996799-----9734999864046776655446889977761779999999999987565


Q ss_pred             ------CCCCCCCEEEEEECCCCCC--------CCCHHHHHHC---------------------------CCC-CH----
Q ss_conf             ------6999970899994699789--------8540899870---------------------------099-70----
Q 002613          218 ------AHGFKNAVIFLFNTGEEEG--------LNGAHSFVTQ---------------------------AGP-HP----  251 (900)
Q Consensus       218 ------~~~p~~~Iiflf~~aEE~g--------L~GS~~fi~~---------------------------~Gp-~~----  251 (900)
                            +.+|+++|+|+||+|||.|        +.||++|+++                           .|. ++    
T Consensus       148 ~~~~~~~~~p~~tI~fv~f~gEE~G~~~~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~~~~i~~~inlD~ig~~~~~~~~  227 (329)
T d2afwa1         148 SLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSLYGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPN  227 (329)
T ss_dssp             TTC------CCEEEEEEEESCCSCSSSCCSSSSCHHHHHHHHHHHTSBSSTTCSSCBTTTTEEEEEEECSCCSSSCCBCC
T ss_pred             HHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHCEEEEEEECCCCCCCCCEEE
T ss_conf             53320268998438999845631464566544443579999986641464223454320020266653145579884367


Q ss_pred             ------HHHH------HHHHHCCCCCCCHHHHHHHHCC--CCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             ------4799------9887328997302346532169--9999984478742299808997542899989998899489
Q 002613          252 ------WAVE------NFAAAAKYPSGQVTAQDLFASG--AITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDL  317 (900)
Q Consensus       252 ------~li~------~y~~~a~~P~~~~l~~~~f~~g--~ips~TD~~~F~~~~gipgld~a~~~~~~~YHT~~Dt~~~  317 (900)
                            +..+      ...+..............+...  .....+||.+|.+ .|||+++++..+.+++|||+.||+|+
T Consensus       228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pF~~-~GIP~~~~~~~~~~~~yHt~~Dt~d~  306 (329)
T d2afwa1         228 FFPNSARWFERLQAIEHELHELGLLKDHSLEGRYFQNYSYGGVIQDDHIPFLR-RGVPVLHLIPSPFPEVWHTMDDNEEN  306 (329)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHHTTCSSSCCSTTCSBCSCCCCSCCCSTTHHHHT-TTCCEEEECCSSCCTTTTSTTCSSTT
T ss_pred             EECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH-CCCCEEEEECCCCCCCCCCCCCCHHH
T ss_conf             61564117677999999999863111566556655556679988782699997-89988999768897878997476035


Q ss_pred             CCHHHHHHHHHHHHHHHHHH
Q ss_conf             99879999999999999999
Q 002613          318 LKPGSLQHLGENMLAFLLQA  337 (900)
Q Consensus       318 i~~~slq~~g~~~l~lv~~l  337 (900)
                      |++++++++++.+.+++.+.
T Consensus       307 ld~~~l~~v~~~l~~~v~ey  326 (329)
T d2afwa1         307 LDESTIDNLNKILQVFVLEY  326 (329)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999998

PyMOL of d2afwa1

>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]}	Back information, alignment and structure

>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]}	Back information, alignment and structure

>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]}	Back information, alignment and structure

>d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]}	Back information, alignment and structure

>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}	Back information, alignment and structure

>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]}	Back information, alignment and structure

>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]}	Back information, alignment and structure

>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1y7ea2 c.56.5.4 (A:4-100,A:234-458) Probable aminopeptidase ApeA {Borrelia burgdorferi [TaxId: 139]}	Back information, alignment and structure