Citrus Sinensis ID: 002614
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 900 | 2.2.26 [Sep-21-2011] | |||||||
| Q4U2R1 | 4836 | E3 ubiquitin-protein liga | yes | no | 0.416 | 0.077 | 0.350 | 2e-51 | |
| O95714 | 4834 | E3 ubiquitin-protein liga | yes | no | 0.416 | 0.077 | 0.348 | 5e-51 | |
| Q15751 | 4861 | Probable E3 ubiquitin-pro | no | no | 0.387 | 0.071 | 0.361 | 7e-51 | |
| Q9FN03 | 440 | Ultraviolet-B receptor UV | no | no | 0.357 | 0.731 | 0.353 | 3e-47 | |
| Q9VR91 | 4912 | Probable E3 ubiquitin-pro | yes | no | 0.413 | 0.075 | 0.322 | 5e-44 | |
| Q6PAV2 | 1057 | Probable E3 ubiquitin-pro | no | no | 0.352 | 0.299 | 0.321 | 1e-42 | |
| Q5PQN1 | 1057 | Probable E3 ubiquitin-pro | no | no | 0.4 | 0.340 | 0.300 | 3e-42 | |
| Q5GLZ8 | 1057 | Probable E3 ubiquitin-pro | no | no | 0.352 | 0.299 | 0.318 | 3e-42 | |
| Q15034 | 1050 | Probable E3 ubiquitin-pro | no | no | 0.38 | 0.325 | 0.309 | 2e-39 | |
| F2Z461 | 1003 | E3 ISG15--protein ligase | no | no | 0.321 | 0.288 | 0.298 | 8e-33 |
| >sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 | Back alignment and function desciption |
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Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 148/422 (35%), Positives = 218/422 (51%), Gaps = 47/422 (11%)
Query: 203 VFIWGEGIAN--GFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVT 260
VF+WG + G L G + +V P E+ AL+V +A G++ VT
Sbjct: 2962 VFVWGLNDKDQLGGLKGSKIKV------------PSFSETLSALNVVQVAGGSKSLFAVT 3009
Query: 261 KQGEIFSWGEESGGRLGHGREA-DVSHPQLIEILSGVNVELVAC--GEYHTCAVTRSGDL 317
+G+++S GE + GRLG G + V P+ I LS V+ VA G H A+T G +
Sbjct: 3010 VEGKVYSCGEATNGRLGLGMSSGTVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKV 3069
Query: 318 YTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGD 377
++WG+G + G LGH S+++C PR + L + I+CG H+A +TS+G L+T+G
Sbjct: 3070 FSWGEG--DDGKLGHFSRMNCDKPRLIEA-LKTKRIRDIACGSSHSAALTSSGELYTWGL 3126
Query: 378 GSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGK 437
G +G LGHGD+ + P+ V+ L G R +V+CG A + TD G
Sbjct: 3127 GEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGS-RDAQTLALTDE-----------GL 3174
Query: 438 LFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAA 497
+F+WGDGD G+LG G E P+ + L + +CQ+ CG S+ALT SG V+T G
Sbjct: 3175 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3234
Query: 498 YGQLG----VPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQL 553
Y +LG V V P V+G + V VA GA H A+T + +VY WG +GQ
Sbjct: 3235 YFRLGHGSDVHVRK---PQVVEGLRGKKIVH-VAVGALHCLAVTDSGQVYAWGDNDHGQQ 3290
Query: 554 GHGDKDNRNSPTLVDFLKDKQVKRVVCGLNFTAIICLHKWVSSVDHSVCSSCHNPFGFRR 613
G+G PTLV L+ +++ RV CG + + W ++VD + S H P F+
Sbjct: 3291 GNGTTTVNRKPTLVQGLEGQKITRVACGSSHSV-----AW-TTVDVAT-PSVHEPVLFQT 3343
Query: 614 KR 615
R
Sbjct: 3344 AR 3345
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E3 ubiquitin-protein ligase that regulates ubiquitin-dependent retention of repair proteins on damaged chromosomes. Recruited to sites of DNA damage in response to ionizing radiation (IR) and facilitates the assembly of UBE2N and RNF8 promoting DNA damage-induced formation of 'Lys-63'-linked ubiquitin chains. Acts as a mediator of binding specificity between UBE2N and RNF8. Involved in the maintenance of RNF168 levels. E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of XPA which influences the circadian oscillation of DNA excision repair activity. Mus musculus (taxid: 10090) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 | Back alignment and function description |
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| >sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 900 | ||||||
| 359473366 | 1047 | PREDICTED: uncharacterized protein LOC10 | 0.952 | 0.818 | 0.681 | 0.0 | |
| 255562792 | 1042 | Ran GTPase binding protein, putative [Ri | 0.948 | 0.819 | 0.669 | 0.0 | |
| 449442447 | 982 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.893 | 0.818 | 0.655 | 0.0 | |
| 449522972 | 806 | PREDICTED: E3 ubiquitin-protein ligase H | 0.838 | 0.936 | 0.651 | 0.0 | |
| 359479203 | 1107 | PREDICTED: uncharacterized protein LOC10 | 0.943 | 0.766 | 0.603 | 0.0 | |
| 255572207 | 1100 | Ran GTPase binding protein, putative [Ri | 0.945 | 0.773 | 0.602 | 0.0 | |
| 357493985 | 1124 | Lateral signaling target protein-like pr | 0.946 | 0.758 | 0.599 | 0.0 | |
| 224105957 | 1104 | predicted protein [Populus trichocarpa] | 0.943 | 0.769 | 0.590 | 0.0 | |
| 356554129 | 1106 | PREDICTED: uncharacterized protein LOC10 | 0.947 | 0.771 | 0.597 | 0.0 | |
| 356501403 | 1109 | PREDICTED: uncharacterized protein LOC10 | 0.948 | 0.770 | 0.595 | 0.0 |
| >gi|359473366|ref|XP_002273996.2| PREDICTED: uncharacterized protein LOC100250008 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1167 bits (3018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/878 (68%), Positives = 697/878 (79%), Gaps = 21/878 (2%)
Query: 1 MLIWYSGKEERQLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKD 60
MLIWYSGKEE+QLKLN VSRIIPGQRT FQRYPRPEKEYQSFSLIY DRSLDLICKDKD
Sbjct: 49 MLIWYSGKEEKQLKLNNVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYGDRSLDLICKDKD 108
Query: 61 EAEVWLVGLKALITRGTHSKWKLGTINCSTSSDSPRARIRKTSPTVTPFDFGDIQGTQVP 120
EAEVW +GLK LI+RG + KW+ + S SS+SP +R R+ SP+++ D GD Q TQV
Sbjct: 109 EAEVWFIGLKGLISRGNYRKWRSEIRDDSISSESPHSRARRISPSLSSSDPGDTQQTQVT 168
Query: 121 LDNVSNNGLGKAFADIISYTEAANTNSRADSVSFSPSPLTNAFPDNSNDRSSAAETFRIS 180
+N+ +GLGKAF+D+ISYT + + ++A+SV+ S S L++ DNSN R+SA+E FR+S
Sbjct: 169 FENIPQSGLGKAFSDVISYTASTKSFTQAESVASSLSSLSSGGVDNSNGRTSASENFRVS 228
Query: 181 LSSVVSSSSHGSAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVES 240
LSS VSSSS GS H+DFD+LGDVF+WGEGI +G +G G HRVG S S + DALLPKA+ES
Sbjct: 229 LSSAVSSSSQGSGHDDFDALGDVFMWGEGIGDGIMGAGVHRVGSSSSTKIDALLPKALES 288
Query: 241 TMALDVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVEL 300
T+ LDVH+IACG +HAVLVTK+GE+FSWGEE G RLGHG E DVSHP+LI+ L G+N+EL
Sbjct: 289 TVVLDVHSIACGGKHAVLVTKKGEVFSWGEECGSRLGHGVEVDVSHPKLIDALCGMNIEL 348
Query: 301 VACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGL 360
VACGEYH+CAVT SGDLYTWGDGT+NSGLLGHGS+ S WIP+KVSG ++G+H+SY++CG
Sbjct: 349 VACGEYHSCAVTLSGDLYTWGDGTHNSGLLGHGSEASHWIPKKVSGPMEGMHVSYVACGP 408
Query: 361 WHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHTAAVV- 419
WHTAVVTSAG LFTFGDG+FGALGHGDH S SIPREVE LRG RT RV+CGVWHTAAVV
Sbjct: 409 WHTAVVTSAGQLFTFGDGTFGALGHGDHSSMSIPREVEALRGQRTMRVACGVWHTAAVVE 468
Query: 420 VATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHD 479
+ SSS SGS+S GKLFTWGDGDKGRLGHGDKEPRL P+ V LI+E+ CQVACGH+
Sbjct: 469 LMIASSSFESSGSSSSGKLFTWGDGDKGRLGHGDKEPRLVPQSVTALINESFCQVACGHN 528
Query: 480 LSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTST 539
LSVALTTSG VYTMGSA YGQLG PVADG +PT V+G+IA SFVEEVACG+YHVA LTS
Sbjct: 529 LSVALTTSGRVYTMGSAVYGQLGSPVADGKIPTLVEGKIANSFVEEVACGSYHVAVLTSK 588
Query: 540 SKVYTWGKGANGQLGHGDKDNRNSPTLVDFLKDKQVKRVVCGLNFTAIICLHKWVSSVDH 599
++VYTWGKG NGQLGHGD D+RN+PTLVDFLKDKQVK VVCGLNFTA I LHKWVS DH
Sbjct: 589 TEVYTWGKGTNGQLGHGDNDHRNTPTLVDFLKDKQVKNVVCGLNFTAAISLHKWVSCADH 648
Query: 600 SVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659
S+CS CHN FGFRRKRHNCYNCGLVFC CSSRKSLKA+LAP++NKPYRVCDDCFTKLKK
Sbjct: 649 SICSGCHNQFGFRRKRHNCYNCGLVFCNTCSSRKSLKASLAPNMNKPYRVCDDCFTKLKK 708
Query: 660 TDTKLKRTSGYTSVVQSPRNRTGNVNHKTAELADREAQGPRLQDQLSILSSFDSNKQTES 719
SG SV++ P+ R+ N+ K+ E+A+R+ GPR+Q QLS LSS DS + ES
Sbjct: 709 A-----MESG--SVLRIPKARSSNILQKSNEIAERDTMGPRVQGQLSRLSSVDSFSRAES 761
Query: 720 RLSKQNLKLELQDNHVYP-VNKNLQMGRIYSPKSSIFLAKSSKKKFSASASSSRMSSLAT 778
+ K + KLE D V P +N N+Q G +S K S L S+K FSAS SR+ S AT
Sbjct: 762 KHYKCDTKLEFNDARVSPHLNGNVQRGSFHSSKLSNSLFGGSRKIFSASRPGSRIVSRAT 821
Query: 779 SPVSGKSSS------------ARSSAVTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHL 826
SPVSGKSS RS T DD K NDSL++EII LRAQVE LT KS+ L
Sbjct: 822 SPVSGKSSPPQSAMLAASLAVVRSPEATDDDPKHTNDSLSREIINLRAQVENLTGKSQIL 881
Query: 827 EAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQ 864
EAELER+S++LK VTA+AE EAEKCK A EVIKSLT Q
Sbjct: 882 EAELERSSRKLKEVTAVAEGEAEKCKAAKEVIKSLTAQ 919
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562792|ref|XP_002522401.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223538286|gb|EEF39893.1| Ran GTPase binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449442447|ref|XP_004138993.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101222790 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449522972|ref|XP_004168499.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|359479203|ref|XP_002279847.2| PREDICTED: uncharacterized protein LOC100248282 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255572207|ref|XP_002527043.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223533605|gb|EEF35343.1| Ran GTPase binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|357493985|ref|XP_003617281.1| Lateral signaling target protein-like protein [Medicago truncatula] gi|355518616|gb|AET00240.1| Lateral signaling target protein-like protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|224105957|ref|XP_002313993.1| predicted protein [Populus trichocarpa] gi|222850401|gb|EEE87948.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356554129|ref|XP_003545401.1| PREDICTED: uncharacterized protein LOC100802464 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356501403|ref|XP_003519514.1| PREDICTED: uncharacterized protein LOC100806439 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 900 | ||||||
| TAIR|locus:505006603 | 1075 | AT5G12350 "AT5G12350" [Arabido | 0.805 | 0.674 | 0.544 | 1.9e-236 | |
| TAIR|locus:2025277 | 1103 | PRAF1 "AT1G76950" [Arabidopsis | 0.775 | 0.632 | 0.491 | 2.2e-198 | |
| TAIR|locus:2079147 | 954 | AT3G47660 "AT3G47660" [Arabido | 0.702 | 0.662 | 0.512 | 3.5e-189 | |
| TAIR|locus:2165770 | 1073 | AT5G42140 "AT5G42140" [Arabido | 0.565 | 0.474 | 0.561 | 2e-175 | |
| TAIR|locus:2086253 | 1045 | AT3G23270 "AT3G23270" [Arabido | 0.536 | 0.462 | 0.526 | 4.3e-156 | |
| TAIR|locus:2009739 | 1006 | AT1G65920 [Arabidopsis thalian | 0.701 | 0.627 | 0.425 | 9.2e-139 | |
| UNIPROTKB|E1BW48 | 4841 | HERC2 "Uncharacterized protein | 0.367 | 0.068 | 0.365 | 1.5e-46 | |
| UNIPROTKB|E1C8K2 | 4841 | HERC2 "Uncharacterized protein | 0.367 | 0.068 | 0.365 | 1.5e-46 | |
| RGD|1307989 | 3607 | Herc2 "HECT and RLD domain con | 0.367 | 0.091 | 0.365 | 1.8e-46 | |
| UNIPROTKB|F1M560 | 3643 | Herc2 "Protein Herc2" [Rattus | 0.367 | 0.090 | 0.365 | 1.8e-46 |
| TAIR|locus:505006603 AT5G12350 "AT5G12350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2091 (741.1 bits), Expect = 1.9e-236, Sum P(2) = 1.9e-236
Identities = 407/748 (54%), Positives = 511/748 (68%)
Query: 1 MLIWYSGKEERQLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKD 60
+LIW+SG EE+ LKL+ VSRII GQRT FQRYPRPEKEYQSFSLIY++RSLD+ICKDKD
Sbjct: 56 VLIWFSGNEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYSERSLDVICKDKD 115
Query: 61 EAEVWLVGLKALITRGTHSKWKLGTINCSTSSD--SPRARIRKTSPTVTPFDFGD-IQ-- 115
EAEVW GLKALI+ + + + T S+ SPR R++SP +PF D +Q
Sbjct: 116 EAEVWFTGLKALISHCHQRNRRTESRSDGTPSEANSPRTYTRRSSPLHSPFSSNDSLQKD 175
Query: 116 GTQ-----VPLDNVSNNGLGKAFADIISYTEAANTNSRADSVSFSPSPLTNAFPDNSNDR 170
G+ P ++ NGL KAF+D+ Y +DS + S + + + R
Sbjct: 176 GSNHLRIHSPFESPPKNGLDKAFSDMALYAVPPKGFYPSDSATISVHS-GGSDSMHGHMR 234
Query: 171 SSAAETFRIXXXXXXXXXXHGSAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQT 230
+ FR+ HGS H+D D+LGDVFIWGEGI G LGGG RVG SF +
Sbjct: 235 GMGMDAFRVSMSSAVSSSSHGSGHDDGDALGDVFIWGEGIGEGVLGGGNRRVGSSFDIKM 294
Query: 231 DALLPKAVESTMALDVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLI 290
D+LLPKA+EST+ LDV NIACG +HAVLVTKQGE FSWGEES GRLGHG ++++ P+LI
Sbjct: 295 DSLLPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNIQQPKLI 354
Query: 291 EILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDG 350
+ L+ N+ELVACGE+H+CAVT SGDLYTWG G + G+LGHG++VS W+P++V+ L+G
Sbjct: 355 DALNTTNIELVACGEFHSCAVTLSGDLYTWGKGDF--GVLGHGNEVSHWVPKRVNFLLEG 412
Query: 351 IHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSC 410
IH+S I+CG +HTAVVTSAG LFTFGDG+FG LGHGD S IPREV++L+GLRT R +C
Sbjct: 413 IHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDKKSVFIPREVDSLKGLRTVRAAC 472
Query: 411 GVWHXXXXXXXXXXXXXXXXXXXXCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDEN 470
GVWH GKLFTWGDGDKGRLGHG+KEP+L P CVA L++ N
Sbjct: 473 GVWHTAAVVEVMVGSSSSSNCSS--GKLFTWGDGDKGRLGHGNKEPKLVPTCVAALVEPN 530
Query: 471 ICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGA 530
CQVACGH L+VALTTSGHVYTMGS YGQLG ADG P RV+G++ +SFVEE+ACGA
Sbjct: 531 FCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNSHADGKTPNRVEGKLHKSFVEEIACGA 590
Query: 531 YHVAALTSTSKVYTWGKGANGQLGHGDKDNRNSPTLVDFLKDKQVKRVVCGLNFTAIICL 590
YHVA LTS ++VYTWGKG+NG+LGHGD D+RNSPTLV+ LKDKQVK + CG NFTA +C+
Sbjct: 591 YHVAVLTSRTEVYTWGKGSNGRLGHGDVDDRNSPTLVESLKDKQVKSIACGTNFTAAVCI 650
Query: 591 HKWXXXXXXXXXXXXXNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVC 650
H+W PF F+RKRHNCYNCGLVFC +C+S+KSLKA +AP+ NKPYRVC
Sbjct: 651 HRWASGMDQSMCSGCRQPFSFKRKRHNCYNCGLVFCHSCTSKKSLKACMAPNPNKPYRVC 710
Query: 651 DDCFXXXXXXXXXXXXXSGYTSVVQSPRNRTGNVNHKTAELADREAQGPRLQDQLSILSS 710
D CF S ++S+ +R G++N + + + R QL+ S
Sbjct: 711 DKCFNKLKKTMETDP--SSHSSL-----SRRGSINQGSDPIDKDDKFDSRSDGQLARFSL 763
Query: 711 FDSNKQTESRLSKQNLKLELQDNHVYPV 738
+S +Q +SR K+N K E + V P+
Sbjct: 764 MESMRQVDSR-HKKNKKYEFNSSRVSPI 790
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| TAIR|locus:2025277 PRAF1 "AT1G76950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2079147 AT3G47660 "AT3G47660" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2165770 AT5G42140 "AT5G42140" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2086253 AT3G23270 "AT3G23270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2009739 AT1G65920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BW48 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C8K2 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| RGD|1307989 Herc2 "HECT and RLD domain containing E3 ubiquitin protein ligase 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1M560 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00036997001 | SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (1052 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 900 | |||
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 7e-30 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 5e-29 | |
| cd13365 | 115 | cd13365, PH_PLC_plant-like, Plant-like Phospholipa | 1e-27 | |
| pfam01363 | 68 | pfam01363, FYVE, FYVE zinc finger | 2e-22 | |
| smart00064 | 68 | smart00064, FYVE, Protein present in Fab1, YOTB, V | 3e-21 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 3e-20 | |
| cd00065 | 57 | cd00065, FYVE, FYVE domain; Zinc-binding domain; t | 4e-19 | |
| cd01248 | 108 | cd01248, PH_PLC_ELMO1, Phospholipase C and Engulfm | 6e-16 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 4e-14 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 2e-13 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 8e-13 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 8e-12 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 9e-11 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 2e-08 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 3e-07 | |
| cd13363 | 117 | cd13363, PH_PLC_delta, Phospholipase C-delta (PLC- | 1e-06 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 2e-06 | |
| pfam12718 | 143 | pfam12718, Tropomyosin_1, Tropomyosin like | 4e-06 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 8e-06 | |
| cd13364 | 108 | cd13364, PH_PLC_eta, Phospholipase C-eta (PLC-eta) | 5e-05 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 3e-04 | |
| pfam09726 | 680 | pfam09726, Macoilin, Transmembrane protein | 4e-04 | |
| pfam13863 | 126 | pfam13863, DUF4200, Domain of unknown function (DU | 0.001 | |
| pfam10234 | 269 | pfam10234, Cluap1, Clusterin-associated protein-1 | 0.001 | |
| pfam13713 | 39 | pfam13713, BRX_N, Transcription factor BRX N-termi | 0.002 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 0.004 |
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 7e-30
Identities = 93/421 (22%), Positives = 146/421 (34%), Gaps = 53/421 (12%)
Query: 201 GDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVT 260
V+ WG N G + + IACG H++ +
Sbjct: 68 ASVYSWGSNGMNELGLGNDETKVDR-PQLNPFGRIDKASII------KIACGGNHSLGLD 120
Query: 261 KQGEIFSWGEESGGRLGHGREAD----------------VSHPQLIEI----LSGVNVEL 300
G ++SWG+ G LG D S P + S + V
Sbjct: 121 HDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVK 180
Query: 301 VACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGL 360
+ACG + +T G +Y+WG G + + + ++ G
Sbjct: 181 LACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIVQLAAGA 240
Query: 361 WHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLR-TTRVSCGVWHTAAVV 419
H +T+ G ++ +G G LG + V +R V+CG H+ A+
Sbjct: 241 DHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLAL- 299
Query: 420 VATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPR----LFPECVAPLIDENICQVA 475
G+++ WG G+LG G P L IC ++
Sbjct: 300 -------------DEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSIS 346
Query: 476 CGHDLSVALTTSGHVYTMGSAAYGQLGVP---VADGLVPTRVDGEIAESFVEEVACGAYH 532
G S+ L G +Y G GQLG+ D PT++ I +E+VACG +H
Sbjct: 347 AGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIK---LEQVACGTHH 403
Query: 533 VAALTSTSKVYTWGKGANGQLGHGDKDNRNS-PTLVDFLKDKQVKRVVCGLNFTAIICLH 591
A T VY+WG G +G LG+G K+ PTL+ ++ G +
Sbjct: 404 NIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEE 463
Query: 592 K 592
Sbjct: 464 T 464
|
Length = 476 |
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|241519 cd13365, PH_PLC_plant-like, Plant-like Phospholipase C (PLC) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >gnl|CDD|216454 pfam01363, FYVE, FYVE zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|214499 smart00064, FYVE, Protein present in Fab1, YOTB, Vac1, and EEA1 | Back alignment and domain information |
|---|
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238022 cd00065, FYVE, FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1; | Back alignment and domain information |
|---|
| >gnl|CDD|241279 cd01248, PH_PLC_ELMO1, Phospholipase C and Engulfment and cell motility protein 1 pleckstrin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|241517 cd13363, PH_PLC_delta, Phospholipase C-delta (PLC-delta) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|205039 pfam12718, Tropomyosin_1, Tropomyosin like | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|241518 cd13364, PH_PLC_eta, Phospholipase C-eta (PLC-eta) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein | Back alignment and domain information |
|---|
| >gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200) | Back alignment and domain information |
|---|
| >gnl|CDD|220640 pfam10234, Cluap1, Clusterin-associated protein-1 | Back alignment and domain information |
|---|
| >gnl|CDD|205888 pfam13713, BRX_N, Transcription factor BRX N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 900 | |||
| COG5184 | 476 | ATS1 Alpha-tubulin suppressor and related RCC1 dom | 100.0 | |
| KOG1427 | 443 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| COG5184 | 476 | ATS1 Alpha-tubulin suppressor and related RCC1 dom | 100.0 | |
| KOG1427 | 443 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG1428 | 3738 | consensus Inhibitor of type V adenylyl cyclases/Ne | 99.86 | |
| KOG1428 | 3738 | consensus Inhibitor of type V adenylyl cyclases/Ne | 99.82 | |
| cd01248 | 115 | PH_PLC Phospholipase C (PLC) pleckstrin homology ( | 99.38 | |
| PF13713 | 39 | BRX_N: Transcription factor BRX N-terminal domain | 99.25 | |
| PF00415 | 51 | RCC1: Regulator of chromosome condensation (RCC1) | 99.13 | |
| PF01363 | 69 | FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f | 99.13 | |
| KOG0941 | 850 | consensus E3 ubiquitin protein ligase [Posttransla | 99.07 | |
| PF00415 | 51 | RCC1: Regulator of chromosome condensation (RCC1) | 98.99 | |
| smart00064 | 68 | FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 | 98.98 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.95 | |
| KOG1818 | 634 | consensus Membrane trafficking and cell signaling | 98.93 | |
| KOG1729 | 288 | consensus FYVE finger containing protein [General | 98.87 | |
| KOG0941 | 850 | consensus E3 ubiquitin protein ligase [Posttransla | 98.86 | |
| PF12814 | 123 | Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin | 98.85 | |
| PF13540 | 30 | RCC1_2: Regulator of chromosome condensation (RCC1 | 98.75 | |
| PF13540 | 30 | RCC1_2: Regulator of chromosome condensation (RCC1 | 98.74 | |
| PTZ00303 | 1374 | phosphatidylinositol kinase; Provisional | 98.72 | |
| KOG1819 | 990 | consensus FYVE finger-containing proteins [General | 98.71 | |
| cd00065 | 57 | FYVE FYVE domain; Zinc-binding domain; targets pro | 98.56 | |
| KOG1842 | 505 | consensus FYVE finger-containing protein [General | 97.77 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 97.76 | |
| KOG1841 | 1287 | consensus Smad anchor for receptor activation [Def | 97.47 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.46 | |
| KOG1843 | 473 | consensus Uncharacterized conserved protein [Funct | 96.98 | |
| cd01244 | 98 | PH_RasGAP_CG9209 RAS_GTPase activating protein (GA | 95.41 | |
| KOG4424 | 623 | consensus Predicted Rho/Rac guanine nucleotide exc | 95.34 | |
| smart00233 | 102 | PH Pleckstrin homology domain. Domain commonly fou | 94.29 | |
| KOG3669 | 705 | consensus Uncharacterized conserved protein, conta | 94.11 | |
| PF00169 | 104 | PH: PH domain; InterPro: IPR001849 The pleckstrin | 93.79 | |
| cd01235 | 101 | PH_SETbf Set binding factor Pleckstrin Homology (P | 93.72 | |
| cd01264 | 101 | PH_melted Melted pleckstrin homology (PH) domain. | 93.48 | |
| cd01238 | 106 | PH_Tec Tec pleckstrin homology (PH) domain. Tec pl | 93.15 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 92.83 | |
| cd01233 | 100 | Unc104 Unc-104 pleckstrin homology (PH) domain. Un | 92.61 | |
| KOG1811 | 1141 | consensus Predicted Zn2+-binding protein, contains | 92.59 | |
| PF02318 | 118 | FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 | 91.98 | |
| cd00821 | 96 | PH Pleckstrin homology (PH) domain. Pleckstrin hom | 91.67 | |
| cd01236 | 104 | PH_outspread Outspread Pleckstrin homology (PH) do | 91.38 | |
| KOG3669 | 705 | consensus Uncharacterized conserved protein, conta | 90.43 | |
| cd01251 | 103 | PH_centaurin_alpha Centaurin alpha Pleckstrin homo | 90.31 | |
| TIGR02449 | 65 | conserved hypothetical protein TIGR02449. Members | 90.29 | |
| cd01266 | 108 | PH_Gab Gab (Grb2-associated binder) pleckstrin hom | 90.05 | |
| KOG0230 | 1598 | consensus Phosphatidylinositol-4-phosphate 5-kinas | 90.01 | |
| cd01265 | 95 | PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain | 89.79 | |
| PF02403 | 108 | Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom | 89.13 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 87.85 | |
| KOG0943 | 3015 | consensus Predicted ubiquitin-protein ligase/hyper | 86.74 | |
| PRK15396 | 78 | murein lipoprotein; Provisional | 85.38 | |
| COG3074 | 79 | Uncharacterized protein conserved in bacteria [Fun | 84.13 | |
| cd01246 | 91 | PH_oxysterol_bp Oxysterol binding protein (OSBP) P | 83.85 | |
| PLN02153 | 341 | epithiospecifier protein | 83.81 | |
| cd00900 | 99 | PH-like Pleckstrin homology-like domain. Pleckstri | 83.76 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 83.44 | |
| PRK09973 | 85 | putative outer membrane lipoprotein; Provisional | 83.41 | |
| PF11932 | 251 | DUF3450: Protein of unknown function (DUF3450); In | 83.29 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 82.67 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 82.19 | |
| TIGR00414 | 418 | serS seryl-tRNA synthetase. This model represents | 81.94 | |
| PF04728 | 56 | LPP: Lipoprotein leucine-zipper; InterPro: IPR0068 | 81.74 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 81.32 | |
| cd01257 | 101 | PH_IRS Insulin receptor substrate (IRS) pleckstrin | 80.95 | |
| KOG2391 | 365 | consensus Vacuolar sorting protein/ubiquitin recep | 80.95 | |
| cd01260 | 96 | PH_CNK Connector enhancer of KSR (Kinase suppresso | 80.77 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 80.54 | |
| PRK11637 | 428 | AmiB activator; Provisional | 80.48 | |
| PF03904 | 230 | DUF334: Domain of unknown function (DUF334); Inter | 80.28 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 80.07 |
| >COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=409.95 Aligned_cols=362 Identities=28% Similarity=0.471 Sum_probs=291.3
Q ss_pred eecCCCcEEEEcCCCCCcccCCCCCccccccccccccccceeeccc--CCCCEEEEEeCCcEEEEEEcCCcEEEEeCCCC
Q 002614 196 DFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVEST--MALDVHNIACGARHAVLVTKQGEIFSWGEESG 273 (900)
Q Consensus 196 ~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~--~~~~I~~Ia~G~~ht~~Lt~dG~Vy~wG~n~~ 273 (900)
....-.+||+||.|. .++||.|.+. +.+..|...... ....|++++||+.|+++|+.||.||+||.|..
T Consensus 63 ~~~~~~~v~~~Gsn~-~~eLGlg~de--------~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~ 133 (476)
T COG5184 63 LLVKMASVYSWGSNG-MNELGLGNDE--------TKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDD 133 (476)
T ss_pred hhhheeeeEEEecCc-ceeeccCCch--------hcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcc
Confidence 577889999999998 8999999753 335677777765 56899999999999999999999999999999
Q ss_pred CccCCCCC----------------CcccccEEeee----cCCCcEEEEEecCcEEEEEEeCCcEEEEcCCCCCCCccCCC
Q 002614 274 GRLGHGRE----------------ADVSHPQLIEI----LSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHG 333 (900)
Q Consensus 274 GqLG~g~~----------------~~~~~P~~v~~----l~~~~I~~Va~G~~hs~aLT~dG~VyswG~n~~~~GqLG~g 333 (900)
|+||.... .....|..|.. ....+|++++||++++++|+++|+||+||.+.- +.++.+
T Consensus 134 G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~--~e~~~g 211 (476)
T COG5184 134 GALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRC--GELGQG 211 (476)
T ss_pred cccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccc--cccccc
Confidence 99998651 12456777765 223479999999999999999999999999854 555554
Q ss_pred CC--cc----cccceeeccCCCCCcEEEEEecCceEEEEecCCeEEEEecCCCCCCCCCCCCCCCcceeeeecCCC-eEE
Q 002614 334 SK--VS----CWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGL-RTT 406 (900)
Q Consensus 334 ~~--~~----~~~P~~V~~~l~~~~I~~VacG~~ht~aLT~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~-~I~ 406 (900)
.. .. ..+|..+. ...|+++++|..|.++||++|++|+||+|.+||||....+....+..+..+... .|.
T Consensus 212 ~~~~s~k~~~~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~ 287 (476)
T COG5184 212 SYKNSQKTSIQFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIK 287 (476)
T ss_pred cccccccceeeeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhh
Confidence 22 22 24454443 457999999999999999999999999999999999877766665555433322 378
Q ss_pred EEEecCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCC----CCcccceeecCCCCCCeeEEEecCcEEE
Q 002614 407 RVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDK----EPRLFPECVAPLIDENICQVACGHDLSV 482 (900)
Q Consensus 407 ~IacG~~hs~al~~~~~~~~~~~~~~~~~G~Vy~WG~n~~GQLG~g~~----~~~~~P~~V~~l~~~~I~~Ia~G~~ht~ 482 (900)
+|+||.+|+++|. ++|++|+||.|-+||||.+.. .....|.....+....|..|++|..|++
T Consensus 288 ~vacG~~h~~al~--------------~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l 353 (476)
T COG5184 288 YVACGKDHSLALD--------------EDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSL 353 (476)
T ss_pred hcccCcceEEEEc--------------CCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEE
Confidence 9999999999997 899999999999999999821 1234556566666777999999999999
Q ss_pred EEecCCcEEEEeCCCCCCCCCCCCCC---cceeeecCCcCCCCEEEEEECCCcceeeecCCeEEEEecCCCCCCCCCCCC
Q 002614 483 ALTTSGHVYTMGSAAYGQLGVPVADG---LVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDKD 559 (900)
Q Consensus 483 aLT~~G~Vy~wG~n~~GQLG~~~~~~---~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~n~~GQLG~G~~~ 559 (900)
+|..+|.||.||.+..||||.+.... ..|..+.. ..++++|+||.+|.++.+.+|+||.||+|.+|+||.|+.+
T Consensus 354 ~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~---~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~ 430 (476)
T COG5184 354 ILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSV---AIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKE 430 (476)
T ss_pred EEecCceEEEecCCccccccCcccceeecCCcccccc---ccceEEEEecCccceeeccCCceEEecCchhhhccCCchh
Confidence 99999999999999999999987331 23333221 3569999999999999999999999999999999999865
Q ss_pred C-CCccEEeec--ccCCcEEEEeecCceeEEEE
Q 002614 560 N-RNSPTLVDF--LKDKQVKRVVCGLNFTAIIC 589 (900)
Q Consensus 560 ~-~~~P~~V~~--l~~~~V~~IacG~~~T~aI~ 589 (900)
. ...|+++.. +....++..-||.+++++..
T Consensus 431 ~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~ 463 (476)
T COG5184 431 ADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEE 463 (476)
T ss_pred hhccccccccccccCCCceEEeccCcceEEEec
Confidence 5 456788763 66667888888877776654
|
|
| >KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] | Back alignment and domain information |
|---|
| >COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] | Back alignment and domain information |
|---|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
| >KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >PF13713 BRX_N: Transcription factor BRX N-terminal domain | Back alignment and domain information |
|---|
| >PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) | Back alignment and domain information |
|---|
| >PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) | Back alignment and domain information |
|---|
| >smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 | Back alignment and domain information |
|---|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1729 consensus FYVE finger containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis | Back alignment and domain information |
|---|
| >PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B | Back alignment and domain information |
|---|
| >PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B | Back alignment and domain information |
|---|
| >PTZ00303 phosphatidylinositol kinase; Provisional | Back alignment and domain information |
|---|
| >KOG1819 consensus FYVE finger-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
| >cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1; | Back alignment and domain information |
|---|
| >KOG1842 consensus FYVE finger-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
| >KOG1843 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00233 PH Pleckstrin homology domain | Back alignment and domain information |
|---|
| >KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] | Back alignment and domain information |
|---|
| >PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ] | Back alignment and domain information |
|---|
| >cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain | Back alignment and domain information |
|---|
| >cd01264 PH_melted Melted pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01238 PH_Tec Tec pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
| >cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A | Back alignment and domain information |
|---|
| >cd00821 PH Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] | Back alignment and domain information |
|---|
| >cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >TIGR02449 conserved hypothetical protein TIGR02449 | Back alignment and domain information |
|---|
| >cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK15396 murein lipoprotein; Provisional | Back alignment and domain information |
|---|
| >COG3074 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
| >cd00900 PH-like Pleckstrin homology-like domain | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PRK09973 putative outer membrane lipoprotein; Provisional | Back alignment and domain information |
|---|
| >PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >TIGR00414 serS seryl-tRNA synthetase | Back alignment and domain information |
|---|
| >PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP | Back alignment and domain information |
|---|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
| >cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 900 | ||||
| 4d9s_A | 406 | Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv | 5e-46 | ||
| 4dnv_A | 370 | Crystal Structure Of The W285f Mutant Of Uvb-Resist | 6e-46 | ||
| 4dnw_A | 374 | Crystal Structure Of Uvb-Resistance Protein Uvr8 Le | 8e-46 | ||
| 4dnu_A | 372 | Crystal Structure Of The W285a Mutant Of Uvb-Resist | 1e-45 | ||
| 3kci_A | 389 | The Third Rld Domain Of Herc2 Length = 389 | 1e-39 | ||
| 3kci_A | 389 | The Third Rld Domain Of Herc2 Length = 389 | 7e-16 | ||
| 3mvd_K | 423 | Crystal Structure Of The Chromatin Factor Rcc1 In C | 1e-16 | ||
| 1a12_A | 413 | Regulator Of Chromosome Condensation (Rcc1) Of Huma | 3e-16 | ||
| 1a12_A | 413 | Regulator Of Chromosome Condensation (Rcc1) Of Huma | 4e-12 | ||
| 1i2m_B | 402 | Ran-Rcc1-So4 Complex Length = 402 | 7e-16 | ||
| 1i2m_B | 402 | Ran-Rcc1-So4 Complex Length = 402 | 6e-12 | ||
| 3of7_A | 473 | The Crystal Structure Of Prp20p From Saccharomyces | 8e-08 | ||
| 1joc_A | 125 | Eea1 Homodimer Of C-Terminal Fyve Domain Bound To I | 4e-06 | ||
| 2yqm_A | 89 | Solution Structure Of The Fyve Domain In Zinc Finge | 3e-05 | ||
| 2yw8_A | 82 | Crystal Structure Of Human Run And Fyve Domain-Cont | 4e-05 | ||
| 1hyi_A | 65 | Solution Structure Of The Eea1 Fyve Domain Complexe | 5e-05 |
| >pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 | Back alignment and structure |
|
| >pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 | Back alignment and structure |
| >pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 | Back alignment and structure |
| >pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 | Back alignment and structure |
| >pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 | Back alignment and structure |
| >pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 | Back alignment and structure |
| >pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 | Back alignment and structure |
| >pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 | Back alignment and structure |
| >pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 | Back alignment and structure |
| >pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 | Back alignment and structure |
| >pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 | Back alignment and structure |
| >pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 | Back alignment and structure |
| >pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol 1,3-Diphosphate Length = 125 | Back alignment and structure |
| >pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve Domain-Containing Protein 12 Length = 89 | Back alignment and structure |
| >pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing Protein Length = 82 | Back alignment and structure |
| >pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With Inositol 1,3-Bisphosphate Length = 65 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
Score = 428 bits (1104), Expect = e-143
Identities = 133/397 (33%), Positives = 187/397 (47%), Gaps = 33/397 (8%)
Query: 201 GDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVT 260
G ++ WG G LGG E +P E+ L + G + VT
Sbjct: 20 GTIYGWGHN-HRGQLGGIE---------GAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 69
Query: 261 KQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVA--CGEYHTCAVTRSGDLY 318
G++++ G +GGRLG G VS P L+E + V ++ VA G H A++ G++Y
Sbjct: 70 ADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVY 129
Query: 319 TWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDG 378
+WG+ G LGHG++ C PR + L GI + ++ G H+A VT+AG L+T+G G
Sbjct: 130 SWGEAED--GKLGHGNRSPCDRPRVIES-LRGIEVVDVAAGGAHSACVTAAGDLYTWGKG 186
Query: 379 SFGALGHGDHISTSIPREVETLRGLRTTRVSCGVW--HTAAVVVATDSSSSSPSGSTSCG 436
+G LGH D P+ VE L+G R ++CG T + T
Sbjct: 187 RYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCL--------------TDDD 232
Query: 437 KLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSA 496
+++WGDGD G+LG G + P + L + +V CG SVALT SG VYT G
Sbjct: 233 TVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKG 292
Query: 497 AYGQLGVPVADG-LVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGH 555
Y +LG D P +V G + V +A G+ H T +VYTWG GQLG
Sbjct: 293 DYHRLGHGSDDHVRRPRQVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGD 351
Query: 556 GDKDNRNSPTLVDFLKDKQVKRVVCGLNFTAIICLHK 592
G + P LV L+ K+V RV CG T K
Sbjct: 352 GTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWSTSK 388
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 | Back alignment and structure |
|---|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A Length = 125 | Back alignment and structure |
|---|
| >2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A Length = 82 | Back alignment and structure |
|---|
| >1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} Length = 84 | Back alignment and structure |
|---|
| >1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1 Length = 131 | Back alignment and structure |
|---|
| >3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} Length = 90 | Back alignment and structure |
|---|
| >1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 Length = 88 | Back alignment and structure |
|---|
| >1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 Length = 73 | Back alignment and structure |
|---|
| >1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 84 | Back alignment and structure |
|---|
| >1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Length = 220 | Back alignment and structure |
|---|
| >3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226 | Back alignment and structure |
|---|
| >3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434 | Back alignment and structure |
|---|
| >1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 Length = 120 | Back alignment and structure |
|---|
| >3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A Length = 203 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406 | Back alignment and structure |
|---|
| >1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Length = 134 | Back alignment and structure |
|---|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} Length = 885 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Length = 153 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 900 | ||||
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 1e-40 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 2e-23 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 3e-22 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 8e-21 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 2e-20 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 2e-19 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 1e-14 | |
| d1joca1 | 64 | g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) | 1e-20 | |
| d1dvpa2 | 72 | g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila me | 2e-18 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 1e-17 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 1e-14 | |
| d1vfya_ | 67 | g.50.1.1 (A:) vps27p protein {Baker's yeast (Sacch | 1e-17 | |
| d1wfka_ | 88 | g.50.1.1 (A:) Zinc finger FYVE domain containing p | 8e-17 | |
| d1maia_ | 119 | b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus | 5e-16 | |
| d2zkmx3 | 131 | b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human | 3e-14 | |
| d1zbdb_ | 124 | g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat | 6e-14 | |
| d1y02a2 | 51 | g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger pro | 2e-13 |
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 152 bits (383), Expect = 1e-40
Identities = 96/411 (23%), Positives = 164/411 (39%), Gaps = 52/411 (12%)
Query: 201 GDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVT 260
G V G+G G LG GE+ + P V DV G H V ++
Sbjct: 15 GLVLTLGQG-DVGQLGLGEN--------VMERKKPALVSIP--EDVVQAEAGGMHTVCLS 63
Query: 261 KQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTW 320
K G+++S+G G LG + S ++ V V+ G+ HT A+T G ++ W
Sbjct: 64 KSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLW 123
Query: 321 GDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSF 380
G N+G++G + + + + ++ G H ++T+ G L+T G G
Sbjct: 124 GSFRDNNGVIGLLEPMKKSMVPVQ--VQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQ 181
Query: 381 GALGHGDHISTS----------------IPREVETLRGLRTTRVSCGVWHTAAVVVATDS 424
G LG + + + + + +R CG + T A+
Sbjct: 182 GQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAI------ 235
Query: 425 SSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVA--CGHDLSV 482
+ G ++ +G + +LG E P+ + + V G +V
Sbjct: 236 --------SHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTV 287
Query: 483 ALTTSGHVYTMGSAAYGQLGVP--VADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTS 540
+ + G Y++G A YG+LG+ + +PT + V VACGA A+T
Sbjct: 288 CMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL---PAVSSVACGASVGYAVTKDG 344
Query: 541 KVYTWGKGANGQLGHGDKDNRNSPTLV--DFLKDKQVKRVVCGLNFTAIIC 589
+V+ WG G N QLG G ++ SP + L+++ V V G T ++
Sbjct: 345 RVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLV 395
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Length = 64 | Back information, alignment and structure |
|---|
| >d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 72 | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
|---|
| >d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67 | Back information, alignment and structure |
|---|
| >d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 | Back information, alignment and structure |
|---|
| >d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119 | Back information, alignment and structure |
|---|
| >d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 131 | Back information, alignment and structure |
|---|
| >d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
| >d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 900 | |||
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 100.0 | |
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 100.0 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 100.0 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 100.0 | |
| d1maia_ | 119 | Phospholipase C delta-1 {Rat (Rattus norvegicus) [ | 99.35 | |
| d2zkmx3 | 131 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.27 | |
| d1joca1 | 64 | Eea1 {Human (Homo sapiens) [TaxId: 9606]} | 99.06 | |
| d1wfka_ | 88 | Zinc finger FYVE domain containing protein 19 {Mou | 98.92 | |
| d1dvpa2 | 72 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 98.9 | |
| d1vfya_ | 67 | vps27p protein {Baker's yeast (Saccharomyces cerev | 98.76 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.33 | |
| d1y02a2 | 51 | Rififylin (FYVE-RING finger protein Sakura) {Human | 97.99 | |
| d1zbdb_ | 124 | Effector domain of rabphilin-3a {Rat (Rattus norve | 97.42 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.24 | |
| d1btka_ | 169 | Bruton's tyrosine kinase {Human (Homo sapiens) [Ta | 95.58 | |
| d1faoa_ | 100 | Dual adaptor of phosphotyrosine and 3-phosphoinosi | 93.91 | |
| d1v5ua_ | 117 | SET binding factor 1, Sbf1 {Mouse (Mus musculus) [ | 93.81 | |
| d1u5ea1 | 209 | Src-associated adaptor protein Skap2 {Mouse (Mus m | 93.07 | |
| d1u5fa1 | 111 | Src-associated adaptor protein Skap2 {Mouse (Mus m | 92.88 | |
| d1u5da1 | 106 | Src kinase-associated phosphoprotein SKAP55 (SCAP1 | 92.73 | |
| d1eaza_ | 103 | Tapp1 {Human (Homo sapiens) [TaxId: 9606]} | 91.77 | |
| d1wg7a_ | 150 | Dedicator of cytokinesis protein 9, DOCK9 {Human ( | 91.46 | |
| d1x1fa1 | 136 | Signal-transducing adaptor protein 1, STAP-1 {Huma | 91.44 | |
| d2adza1 | 105 | Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1 | 87.18 | |
| d2coda1 | 102 | Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96 | 86.72 | |
| d1v5ma_ | 136 | SH2 and PH domain-containing adapter protein APS { | 86.35 | |
| d1qqga1 | 103 | Insulin receptor substrate 1, IRS-1 {Human (Homo s | 85.91 | |
| d1omwa2 | 119 | G-protein coupled receptor kinase 2 (beta-adrenerg | 85.1 | |
| d1wjma_ | 123 | beta-spectrin {Human (Homo sapiens), brain 2 isofo | 84.77 | |
| d2coaa1 | 112 | Protein kinase c, d2 type {Human (Homo sapiens) [T | 82.62 | |
| d1plsa_ | 113 | Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} | 81.32 |
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=471.57 Aligned_cols=371 Identities=27% Similarity=0.424 Sum_probs=314.0
Q ss_pred CEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECC
Q ss_conf 50484557996999828999962589977545444466555664131456899879999378679999819909999389
Q 002614 192 SAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTKQGEIFSWGEE 271 (900)
Q Consensus 192 ~~~~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~V~~Ia~G~~ht~~Lt~dG~Vy~WG~n 271 (900)
.|.++++.+|+||+||.|. .||||.|.+. .+...|.+++.+ .+|++|+||..|+++|+.+|+||+||.|
T Consensus 6 ~h~~~~~~~G~vy~wG~n~-~GqLG~g~~~--------~~~~~P~~v~~~--~~i~~ia~G~~h~~al~~~G~vy~wG~n 74 (401)
T d1a12a_ 6 SHRSHSTEPGLVLTLGQGD-VGQLGLGENV--------MERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCN 74 (401)
T ss_dssp CCTTCCCCCBEEEEEEECT-TSTTCSCTTC--------CEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred EEEEEECCCCEEEEEECCC-CCCCCCCCCC--------CEECCCEEECCC--CCEEEEEECCCEEEEEECCCEEEEEECC
T ss_conf 6789997898899996999-8888999988--------650357790899--9929999189889999679989999589
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 99965889997645567950028994999995596799998089499993998999755899985311120121688997
Q 002614 272 SGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGI 351 (900)
Q Consensus 272 ~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~~G~Vy~WG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~ 351 (900)
.+||||++...+...|.+.......+|++|+||..|+++++++|+||+||.+.+..++++.........+... .....
T Consensus 75 ~~GQLG~g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 152 (401)
T d1a12a_ 75 DEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQ--VQLDV 152 (401)
T ss_dssp TTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEE--ECCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEE--ECCCC
T ss_conf 9988774465566423554235422002201110010100034531120214565554466677543100110--01688
Q ss_pred CEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCC-----------CCCEEEE-----ECCCCEEEEEEECCCEE
Q ss_conf 3899996685389994198099992399987888889887-----------7560564-----11797599998468658
Q 002614 352 HLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHIST-----------SIPREVE-----TLRGLRTTRVSCGVWHT 415 (900)
Q Consensus 352 ~Iv~VacG~~hs~aLts~G~VytwG~n~~GqLG~g~~~~~-----------~~P~~V~-----~l~~~~I~~IacG~~ht 415 (900)
.|++|+||..|+++++++|++|+||.|.+||||++..... ..|..+. .....+|.+|+||.+|+
T Consensus 153 ~i~~i~~g~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~ 232 (401)
T d1a12a_ 153 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFT 232 (401)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEE
T ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCEE
T ss_conf 50699820352256503785003466876622888753445677555443356520000356777784399999368769
Q ss_pred EEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCC--CCEEEEEECCCEEEEEECCCCEEEE
Q ss_conf 99997247899999998879829999379999878999998424245247778--8726997219589999569919999
Q 002614 416 AAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLID--ENICQVACGHDLSVALTTSGHVYTM 493 (900)
Q Consensus 416 ~ai~~~~~~~~~~~~~~~~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~--~~I~~Ia~G~~ht~aLt~~G~Vy~w 493 (900)
++++ .+|++|+||.+.+|++|.+.......+..+..+.. ..++.+++|..|+++|+.+|+||+|
T Consensus 233 ~~l~--------------~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~w 298 (401)
T d1a12a_ 233 FAIS--------------HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSL 298 (401)
T ss_dssp EEEE--------------TTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEE
T ss_pred EEEE--------------CCCEEEEECCCCEECCCCCCCCCCEECCCCCCCCCCCEEEEEEEEECCCEEEECCCCCEEEE
T ss_conf 9995--------------59818651222102035456631000001012355403699985101201356148978884
Q ss_pred ECCCCCCCCCCCCC--CCCEEEECCCCCCCCEEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEC--
Q ss_conf 17999999989889--85204522776789789999788843344159839998339999879999999984089601--
Q 002614 494 GSAAYGQLGVPVAD--GLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDKDNRNSPTLVDF-- 569 (900)
Q Consensus 494 G~n~~GQLG~~~~~--~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLT~~G~Vy~WG~n~~GqLG~G~~~~~~~P~~V~~-- 569 (900)
|.|.+||||.+... ...|..++. ...|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|++|..
T Consensus 299 G~n~~gqlG~g~~~~~~~~P~~i~~---~~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~ 375 (401)
T d1a12a_ 299 GRAEYGRLGLGEGAEEKSIPTLISR---LPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQ 375 (401)
T ss_dssp ECCGGGTTCSCTTCCCEEEEEECCS---SSSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEECCC---CCCEEEEEEECCEEEEEECCCEEEEEECCCCCCCCCCCCCCEECCEEEECCC
T ss_conf 0334675678862333558888579---9982999930887999948996999925998877899998886078964357
Q ss_pred CCCCCEEEEEECCCEEEEEEECC
Q ss_conf 26981899952696047797203
Q 002614 570 LKDKQVKRVVCGLNFTAIICLHK 592 (900)
Q Consensus 570 l~~~~v~~IacG~~hT~aI~~~k 592 (900)
+++.+|.+|+||.+||++|+.++
T Consensus 376 ~~~~~v~~v~~G~~hs~~l~~d~ 398 (401)
T d1a12a_ 376 LENRVVLSVSSGGQHTVLLVKDK 398 (401)
T ss_dssp TTTEEEEEEEECSSEEEEEEEEC
T ss_pred CCCCEEEEEEECCCEEEEEEECC
T ss_conf 89988999997524399999799
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
| >d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
| >d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
| >d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|