Citrus Sinensis ID: 002641

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------
Protein Sequence
MRDDVSVVVPCAKLLSKMSGSQASELKELERNYEELLDENCRVFASYFKQVLENSNDSGLIIVTPPSVVLRKIEKVGGLHFDSEIESSLDKHLNNSSYSSSDSDAEATDEQKNIRMASLEPRQRQIRKQKQPIFVESSCSPDHLIMADADNPPGIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEEKAADDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGIFGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIFIQVVD
Secondary Structure (PSIPRED)
cccccHHHccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccEEEccHHHHHcccccccEEEEEEEcccEEEEcccccEEEEEccccccHHHHHHHHccccEEEEEEccccccEEEccccccEEEEccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHEHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHcccccccccHHHHHHHHHHcHHHccccccccccHHHHHHcccHHHcccccccccccccEEEcccccccccccccccccccccccccccccccccccHHHccccEEEEccccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccHEEEEccccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccHHHHHHccHcccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEccccccEEEEEEEEccEEEEEcccccEEEEEccccEEEEEEEHHHcccEEEEEEEccccccccccccccEEEEEcccccEEEEEEEEcc
Coil and Loop (DISEMBL)
MRDDVSVVVPCAKLLskmsgsqaSELKELERNYEELLDENCRVFASYFKQVLEnsndsgliivtppsvvLRKIEkvgglhfdsEIESSldkhlnnssysssdsdaeatdeQKNIRMASLEPRQrqirkqkqpifvesscspdhlimadadnppgigkhtppkdfvcpitthifddpvtletgqTYERRAIQEWIErgnsscpitrqklsstklpktNYVLKRLIASWqeqnpggldlshsepmsksivpsnspnsvisqaTIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSElgsrdksvIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMqedgkcrnsiadkaelapVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLdllaeprkmsIYREEAIDTLISclrnsdypAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAgvgksyknltrteqignicgedddtseeEKAADDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGIFGAARVSLLKRFISAFKSANDIDDRALSLLALnsfaqdpqglrdINIHMKDIMKGLRELRKYSPLAFEMVKVLsnghdssadfwnhrelvhvdssengkvlSIACFRdkifsghsdgtikvwtGRGSILHLIQQIREHTKAVTGLailqsgemlysgsldktarvrsndsfTYAIFIQVVD
Flexible Loop (DISEMBL)
mrddvsvvvpcakllskmsgsqaseLKELERNYEELLDENCRVFASYFKQVLensndsgliivtppsvVLRKIEKVGGLHFDSEIEssldkhlnnssysssdsdaeatdEQKNIRmasleprqrqirkqkqpIFVESSCSPDHLIMADADNPPGIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWiergnsscpitrqklsstklpkTNYVLKRLIASWQEQNPGGLDLSHSEPMSKsivpsnspnsVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLlselgsrdksvihtltrvesdvERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIikdegtysSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQgrfttsgksltrAMLLKragvgksyknltrteqignicgedddtsEEEKAADDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGIFGAARVSLLKRFISAFKSANDIDDRALSLLALNSfaqdpqglrDINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLdktarvrsndsfTYAIFIQVVD
Low Complexity Region (SEG)
MRDDVSVVVPCAKLLSKMSGSQASELKELERNYEELLDENCRVFASYFKQVLENSNDSGLIIVTPPSVVLRKIEKVGGLHFDSEIESSLDKHLNNssysssdsdAEATDEQKNIRMASLEprqrqirkqkqpiFVESSCSPDHLIMADADNPPGIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGlllqldllAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEEKAADDWERKMALVLVSHDfgllfealeeglNSRFAELYSACFESATWLIYMLNFLPDTGIFGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIFIQVVD
Disordered region (IsUnstruct)
*******VVPCA*******************NYEELLDENCRVFASYFKQVLENSNDSGLIIVTPPSVVLRKIEKVGGLHFD*******************************************************************************KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPIT********LPKTNYVLKRLIASW*******************************QATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNIC***************WERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGIFGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIFIQV**
Disordered Region (DISOPRED)
***DVSVVVPCAK********************EELLDENCRVFASYFKQV*************************************************************************************************************PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDLSHS**************************TELKH**********************RCWLEASMELDIQIMLSKPAVINGFVEILFNS****VLEATIFLLSELG**************SDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLE*****ERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAAS*GERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQ******CPVVAGLLLQL*****************DTLISCLRNSDY*AAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGV****************************AADDWERKMALVLVSHDFGLLFEALE*********LYSACFESATWLIYMLNFLPDTGIFGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIFIQVVD
Disordered Region (DISEMBL)
MRDDVSVVVPCAKLLSKMSGSQASELKELERNYEELLDENCRVFASYFKQVLENSNDSGLIIVTPPSVVLRKIEKVGGLHFDSEIESSLDKHL*****************QKNIRMASLEPRQRQIRKQKQPIFVESSCSPDHLIMADADNPPGIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGE***********DDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGIFGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIFIQVVD
Disordered Region (DISPRO)
***DVSVVVPCAKLLSKMSGSQASELKELERNYEELLDENCRVFASYFKQVLENSNDSGLIIVTPPSVVLRKIEKVGGLHFDSEIESSLDKHLNNSSYSSSDSDAEATDEQKNIRMASLEPRQRQIRKQKQPIFVE********************KHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLD**************************DGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICG*DDDTSEEEKAADDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGIFGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIFIQVVD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRDDVSVVVPCAKLLSKMxxxxxxxxxxxxxxxxxxxxxNCRVFASYFKQVLENSNDSGLIIVTPPSVVLRKIEKVGGLHFDSEIESSLDKHLNNSSYSSSDSDAEATDEQKNIRMASLEPRQRQIRKQKQPIFVESSCSPDHLIMADADNPPGIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEEKAADDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGIFGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIFIQVVD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	897	2.2.26 [Sep-21-2011]
C6L7U1	1485	Putative E3 ubiquitin-pro	N/A	no	0.800	0.483	0.447	1e-165
D1FP53	1488	Putative E3 ubiquitin-pro	N/A	no	0.800	0.482	0.445	1e-164
D1FP57	1485	Putative E3 ubiquitin-pro	N/A	no	0.800	0.483	0.441	1e-157
Q0IMG9	694	E3 ubiquitin-protein liga	no	no	0.113	0.146	0.421	2e-16
A2ZLU6	694	Protein spotted leaf 11 O	N/A	no	0.113	0.146	0.421	2e-16
Q9SNC6	660	U-box domain-containing p	no	no	0.078	0.106	0.549	3e-16
Q8GUG9	612	U-box domain-containing p	no	no	0.102	0.150	0.443	2e-15
Q9C9A6	628	U-box domain-containing p	no	no	0.218	0.312	0.292	2e-15
Q5VRH9	611	U-box domain-containing p	no	no	0.207	0.304	0.319	4e-15
Q8VZ40	632	U-box domain-containing p	no	no	0.206	0.292	0.307	7e-15

>sp|C6L7U1|LIN1_LOTJA Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus GN=CERBERUS PE=2 SV=2

 Score =  583 bits (1503), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 343/766 (44%), Positives = 467/766 (60%), Gaps = 48/766 (6%)

Query: 160  PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
            PPKDFVCPIT  IF DPVTLETGQTYER+AIQEW+  GN++CPITRQ LS++ LPKTNYV
Sbjct: 511  PPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSASILPKTNYV 570

Query: 220  LKRLIASWQEQNPG-GLDLSH-SEPMSKSIVPS--------------------------- 250
            LKRLI SW+EQNP    + S+ + P   S  PS                           
Sbjct: 571  LKRLITSWKEQNPELAQEFSNVNTPRGSSCSPSAKDIPMLSTRQRTTDSPNHKNKDYARQ 630

Query: 251  -----------NSPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEA 299
                        SP SV+SQA ++  +  LK  I+SLC SE L E E AVL+I R   ++
Sbjct: 631  RSNRFMPAAITTSPTSVLSQAAVETIVNSLKPYISSLCTSENLPECEEAVLKIARLLKDS 690

Query: 300  SMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDV 359
                 I   LSKP +ING VEIL  S +  VL  +I++LSEL   D SV  TL  V+SD 
Sbjct: 691  KTNPQIHSYLSKPTIINGLVEILSASRNREVLRTSIYILSELIFTDDSVAETLNSVDSDF 750

Query: 360  ERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEE--DFLKMCLKPKSV 417
            + +  L K GL EA +LI  LRP    L   +++ SL+ VI+ K E  D  ++ + PK  
Sbjct: 751  DCLATLLKNGLAEAALLIYQLRPVFAQLSAHELIPSLVDVIQNKNEELDDFQLVIDPKDA 810

Query: 418  SVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDG 477
            ++ +L Q +   +E   S  A++++S+    +++  LE    E R + V +LL CMQ + 
Sbjct: 811  AIAILEQTLMGGDEYSRSLNASSVISANGIPTLVKYLER--MEGRRSVVSVLLCCMQAEK 868

Query: 478  KCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYS 537
             C+N IA++ EL+PV+E F + +D  R   V FLSELV+LNRRT   QILH IKDEG +S
Sbjct: 869  SCKNLIANRIELSPVLELFHSGNDSVRGTCVEFLSELVQLNRRTSCNQILHTIKDEGAFS 928

Query: 538  SMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQ 597
            +MHT LVYLQ A  +    VA LLLQLDLLAEPRKMSIYREEA++TLI  L   D+   Q
Sbjct: 929  TMHTFLVYLQMAPMEHQLAVASLLLQLDLLAEPRKMSIYREEAVETLIEALWQKDFSNTQ 988

Query: 598  LAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEEK 657
            + A   ++ L G  ++SGKS T A LLK AG  + Y  L + EQ+G    +  +T E+EK
Sbjct: 989  MKALDALLFLIGHISSSGKSYTEAWLLKIAGFDQPYNALMKVEQLGQHDNDLIETMEDEK 1048

Query: 658  AA-DDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGI 716
             A + W++++A VL +H+ G +F+ALEE L S   ++  +C   ATWL +ML  LPDTG+
Sbjct: 1049 NALNSWQKRIASVLCNHENGSIFKALEECLKSNSLKMAKSCLVLATWLTHMLYTLPDTGV 1108

Query: 717  FGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELR 776
               AR SLL+  I+  +S+ +++++ L+ LAL +F  DP     + ++ K I + LR L+
Sbjct: 1109 RDVARKSLLEEVINVLQSSKNLEEKILATLALKTFISDPSTHEALRVYAKSIYRTLRRLK 1168

Query: 777  KYSPLAFEMVKVLSNGHD-SSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTI 835
            KYS +A +++KV+ N       + W+ +E+V +D S NG+VLS+     ++ SGH+DGTI
Sbjct: 1169 KYSVVAVDIMKVILNLKSVDVTELWSCKEVVELDLSSNGEVLSMVYLNGQVLSGHTDGTI 1228

Query: 836  KVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
            KVW  R  I  +IQ+  EHTKAVT L    SG+ LYSGSLDKT RV
Sbjct: 1229 KVWDARKRIPRVIQETHEHTKAVTSLC--SSGDRLYSGSLDKTIRV 1272

Putative E3 ubiquitin-protein ligase involved in the rhizobial infection process. Plays an important role in the early steps of infection thread formation and in growth and differentiation of nodules.
Lotus japonicus (taxid: 34305)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|D1FP53|LIN_MEDTR Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula GN=LIN PE=2 SV=1

 Score =  578 bits (1491), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 342/767 (44%), Positives = 470/767 (61%), Gaps = 49/767 (6%)

Query: 160  PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
            PPKDFVCPIT  IF DPVTLETGQTYER+AIQEW+  GN++CPITRQ LS+  LPKTNYV
Sbjct: 513  PPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLGTGNTTCPITRQALSANILPKTNYV 572

Query: 220  LKRLIASWQEQNPG-GLDLSHSE-PMSKSIVPSN-------------------------- 251
            LKRLI SW+EQNP    + S+S  P   S  PS                           
Sbjct: 573  LKRLIVSWKEQNPELAQEFSNSNTPRGSSCSPSAKDITMVSSIQRTTDSPSQKYKDDYIR 632

Query: 252  -------------SPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLE 298
                         SP SV+SQA ++  I  L   ITSLC SE L + E AVL+I R W +
Sbjct: 633  QRNNRFTRVSVGASPTSVLSQAAVETIINSLTPYITSLCTSENLQDCEQAVLEIARLWKD 692

Query: 299  ASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESD 358
            +  +  I   LSKP V++G VEIL  S++  VL  +I++LSEL   D+ V  TL  V+SD
Sbjct: 693  SKTDPQIHSYLSKPTVVSGLVEILSASLNREVLRRSIYILSELIFSDERVGETLNSVDSD 752

Query: 359  VERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDF--LKMCLKPKS 416
             + +  L K GL EA +LI  LRP    L E +++ SL+ VI+ K ED    ++ + PK+
Sbjct: 753  FDCLAMLLKNGLAEAALLIYQLRPVFAQLSEHELIPSLIQVIQNKSEDIDDFQLAIDPKA 812

Query: 417  VSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQED 476
             ++ +L Q++   +E   S  A++++S+    +++  L+    E R   + ILL CMQ +
Sbjct: 813  AAIAILEQILIGGDEYNRSVNASSVISANGIPAIVKYLDK--TEGRRPVISILLCCMQAE 870

Query: 477  GKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTY 536
              C++SIA++ EL+PV+E F A +D  R   V FLSELV+LNRRT + Q L IIKDEG +
Sbjct: 871  KSCKSSIANRIELSPVLELFHAGNDSVRGICVEFLSELVRLNRRTSSNQTLQIIKDEGAF 930

Query: 537  SSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAA 596
            S+MHT LVYLQ A  +    VA LLLQLDLLAEPRKMSIYREEA++TLI  L   D+   
Sbjct: 931  STMHTFLVYLQMAPMEHQIAVASLLLQLDLLAEPRKMSIYREEAVETLIEALWQKDFSNN 990

Query: 597  QLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEE 656
            Q+ A   ++ L G  T+SGKS T A LLK AG  + Y  L + EQ+G+   +  +T E+E
Sbjct: 991  QMKALDALLFLIGHVTSSGKSYTEAGLLKIAGFDQPYNVLMKAEQLGHSDNDFMETMEDE 1050

Query: 657  K-AADDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTG 715
            K A   W++++A VL +H+ G +F+ALEE L S   ++  +C   ATWL +ML  LPDTG
Sbjct: 1051 KNAMKSWQKRVASVLCNHENGSIFQALEECLKSNSLKMAKSCLVLATWLTHMLFTLPDTG 1110

Query: 716  IFGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLREL 775
            +   AR SLL+  ++  +S+ +++++ L+ LAL SF  DP     + ++ K I + LR+L
Sbjct: 1111 VRDVARKSLLEALMNVLQSSKNLEEKILASLALKSFISDPTVHEVLRVYAKSIYRILRKL 1170

Query: 776  RKYSPLAFEMVKVLSNGHD-SSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGT 834
            +KYS +A +++K L N +     + W+ +E+V +D S NG+VLS+     ++ SGH+DGT
Sbjct: 1171 KKYSTVAADILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLHYLNGQVLSGHADGT 1230

Query: 835  IKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
            IKVW  R  I  +IQ+ REH KAVT L    S + LYS SLDKT RV
Sbjct: 1231 IKVWDARKRIPRVIQETREHKKAVTSLC--SSVDKLYSSSLDKTIRV 1275

Putative E3 ubiquitin ligase involved in the rhizobial infection process. Plays an important role in the early steps of infection thread formation and in growth and differentiation of nodules.

Medicago truncatula (taxid: 3880)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|D1FP57|LIN2_LOTJA Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus japonicus GN=LIN PE=1 SV=1

 Score =  556 bits (1434), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 338/766 (44%), Positives = 456/766 (59%), Gaps = 48/766 (6%)

Query: 160  PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
            PPKDFVCPIT  IF DPVTLETGQTYER+AIQEW+  GN++CPITRQ LS++ LPKTNYV
Sbjct: 511  PPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSASILPKTNYV 570

Query: 220  LKRLIASWQEQNPG-GLDLSH-SEPMSKSIVPS--------------------------- 250
            LKRLI SW+EQNP    + S+ + P   S  PS                           
Sbjct: 571  LKRLITSWKEQNPELAQEFSNVNTPRGSSCSPSAKDIPMLSTRQRTTDSPNHKNKDYARQ 630

Query: 251  -----------NSPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEA 299
                        SP SV+SQA ++  +  LK  I+SLC SE L E E AVL+I R   ++
Sbjct: 631  RSNRFMPAAITTSPTSVLSQAAVETIVNSLKPYISSLCTSENLPECEEAVLKIARLLKDS 690

Query: 300  SMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDV 359
                 I   LSKP +ING VEIL  S +  VL  +I++LSEL   D SV  TL  V+SD 
Sbjct: 691  KTNPQIHSYLSKPTIINGLVEILSASRNREVLRTSIYILSELIFTDDSVAETLNSVDSDF 750

Query: 360  ERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEE--DFLKMCLKPKSV 417
            + +  L K GL EA +LI  LRP    L   +++ SL+ VI+ K E  D  ++ + PK  
Sbjct: 751  DCLATLLKNGLAEAALLIYQLRPVFAQLSAHELIPSLVDVIQNKNEELDDFQLVIDPKDA 810

Query: 418  SVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDG 477
            ++ +L Q +   +E   S  A++++S+    +++  LE    E R + V +LL CMQ + 
Sbjct: 811  AIAILEQTLMGGDEYSRSLNASSVISANGIPTLVKYLER--MEGRRSVVSVLLCCMQAEK 868

Query: 478  KCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYS 537
             C+N IA++ EL+PV+E F + +D  R   V FLSELV+LNRRT   Q+LH IKDEG +S
Sbjct: 869  SCKNLIANRIELSPVLELFHSGNDSVRGTCVEFLSELVQLNRRTSCNQLLHTIKDEGAFS 928

Query: 538  SMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQ 597
            +MHT LVYLQ A  +    VA LLLQLDLLAEPRKMSIYREEA++TLI  L   D+   Q
Sbjct: 929  TMHTFLVYLQMAPMEHQLAVASLLLQLDLLAEPRKMSIYREEAVETLIEALWQKDFSNTQ 988

Query: 598  LAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEEK 657
            + A   ++ L G  ++SGKS T A LLK AG  + Y  L + EQ+G    +  +T E+EK
Sbjct: 989  MKALDALLFLIGHISSSGKSYTEAWLLKIAGFDQPYNALMKVEQLGQHDNDLIETMEDEK 1048

Query: 658  AA-DDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGI 716
             A + W++++A VL +H+ G +F+ALEE L S   ++  +C   ATWL  ML  LPDTG+
Sbjct: 1049 NALNSWQKRIASVLCNHENGSIFKALEECLKSNSLKMAKSCLVLATWLTRMLYTLPDTGV 1108

Query: 717  FGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELR 776
               AR SLL+  I    S+  ++D  L  L+L  F  DP     + ++ K I + LR+L+
Sbjct: 1109 RDVARKSLLEEVIKVLHSSKSLEDMILVTLSLYPFISDPTVHEVLRVYAKSIYRILRKLK 1168

Query: 777  KYSPLAFEMVKVLSNGHD-SSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTI 835
            KYS +A +++K L N +     + W+ +E+V +D S NG+VLS+     ++ SG  DGT 
Sbjct: 1169 KYSTVAADILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLHYLNGQVLSGLMDGTS 1228

Query: 836  KVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
            KV   R  I  +IQ+  EHTKAVT L    SG+ LYS SLDKT RV
Sbjct: 1229 KVCDARKRIPRVIQETHEHTKAVTSLC--SSGDRLYSASLDKTIRV 1272

Putative E3 ubiquitin-protein ligase involved in the rhizobial infection process. Plays an important role in the early steps of infection thread formation and in growth and differentiation of nodules.

Lotus japonicus (taxid: 34305)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 12/114 (10%)

Query: 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
           T P +F CPI+  +  DPV + TGQTYER  I++WI  G+ +CP T+QK+S++ L   NY
Sbjct: 272 TIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSAL-TPNY 330

Query: 219 VLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSPNSVIS---QATIDGTITEL 269
           VL+ LI+ W E N  G+     EP  +S  P N P    S   +A ID  +++L
Sbjct: 331 VLRSLISQWCETN--GM-----EPPKRSTQP-NKPTPACSSSERANIDALLSKL 376

E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 12/114 (10%)

Query: 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
           T P +F CPI+  +  DPV + TGQTYER  I++WI  G+ +CP T+QK+S++ L   NY
Sbjct: 272 TIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSAL-TPNY 330

Query: 219 VLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSPNSVIS---QATIDGTITEL 269
           VL+ LI+ W E N  G+     EP  +S  P N P    S   +A ID  +++L
Sbjct: 331 VLRSLISQWCETN--GM-----EPPKRSTQP-NKPTPACSSSERANIDALLSKL 376

Defense related protein that negatively regulates programmed cell death. In vitro, possesses E3 ubiquitin ligase activity.

Oryza sativa subsp. indica (taxid: 39946)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 50/71 (70%), Gaps = 1/71 (1%)

Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
           P DF CPI+  +  DPV + +GQTYER  I++WIE G+S+CP T+Q L+ST L   NYVL
Sbjct: 257 PDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTL-TPNYVL 315

Query: 221 KRLIASWQEQN 231
           + LIA W E N
Sbjct: 316 RSLIAQWCEAN 326

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 57/97 (58%), Gaps = 5/97 (5%)

Query: 142 DHLIMADADNPPGIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSC 201
           D ++  + D      K T P DF+CP++  +  DPV + TGQTYER  IQ WI+ GN +C
Sbjct: 223 DKMVNKNTDESKKSDKLTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTC 282

Query: 202 PITRQKLSSTKLPKTNYVLKRLIASW-QEQN---PGG 234
           P T+QKL +  L   NYVL+ LI+ W  E N   P G
Sbjct: 283 PKTQQKLENFTLTP-NYVLRSLISRWCAEHNIEQPAG 318

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 105/219 (47%), Gaps = 23/219 (10%)

Query: 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
           T P+DF+CPI+  +  DP  + TGQTYER  IQ WI+ GN SCP T+QKL +  L   NY
Sbjct: 242 TIPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFTL-TPNY 300

Query: 219 VLKRLIASWQEQN----PGGLDLSHSEPMSKSIVPSNSPNSVISQATIDGTITELKHAIT 274
           VL+ LI+ W  ++    PGG             +   + NS  S   + G ++ ++  + 
Sbjct: 301 VLRSLISQWCTKHNIEQPGGY------------MNGRTKNSDGSFRDLSGDMSAIRALVC 348

Query: 275 SLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEAT 334
            L  S+ + +   AV +I      +    D +I++++   I   V++L +  D    E  
Sbjct: 349 KLS-SQSIEDRRTAVSEIRSL---SKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENA 404

Query: 335 IFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEA 373
           +  +  L   + +    L  +   V  IV + + G +EA
Sbjct: 405 VTCILNLSIYEHN--KELIMLAGAVTSIVLVLRAGSMEA 441

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 108/219 (49%), Gaps = 33/219 (15%)

Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
           P +F CPI+  +  DPV + +GQTYER  IQ+W++ G+ +CP T+Q LS T L   N+VL
Sbjct: 229 PDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSL-TPNFVL 287

Query: 221 KRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSPNSVISQATIDGTITELKHAITSLCMSE 280
           K LI+ W E N  G++L           P N  NS   +A      ++  HA     M+ 
Sbjct: 288 KSLISQWCEAN--GIEL-----------PKNKQNSRDKKA---AKSSDYDHAGLVSLMNR 331

Query: 281 IL----NESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIF 336
           +     +E   A  +I    L A   ++ +I +++   I   V +L +S DPR  E  + 
Sbjct: 332 LRSGNQDEQRAAAGEIR---LLAKRNVNNRICIAEAGAIPLLVNLLSSS-DPRTQEHAVT 387

Query: 337 LLSELG--SRDKSVIHTLTRVESD-VERIVALFKKGLLE 372
            L  L     +K+ I     V+S  + +IV + K G +E
Sbjct: 388 ALLNLSIHENNKASI-----VDSHAIPKIVEVLKTGSME 421

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 23/208 (11%)

Query: 142 DHLIMADADNPPGIG-----KH-TP--PKDFVCPITTHIFDDPVTLETGQTYERRAIQEW 193
           D + M  +D  P  G     +H +P  P+ F CPI+  +  DPV + TGQTYER +IQ+W
Sbjct: 222 DFVTMESSDPDPSTGSRIVSRHRSPVIPEYFRCPISLELMKDPVIVSTGQTYERSSIQKW 281

Query: 194 IERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSP 253
           ++ G+ +CP +++ L    L   NYVLK LIA W E N  G++L  ++   ++     S 
Sbjct: 282 LDAGHKTCPKSQETLLHAGL-TPNYVLKSLIALWCESN--GIELPQNQGSCRTTKIGGSS 338

Query: 254 NSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPA 313
           +S   +  +   + +L +  T         E + A     R  L A   +D ++ +++  
Sbjct: 339 SSDCDRTFVLSLLEKLANGTT---------EQQRAAAGELR--LLAKRNVDNRVCIAEAG 387

Query: 314 VINGFVEILFNSVDPRVLEATIFLLSEL 341
            I   VE+L +S DPR  E ++  L  L
Sbjct: 388 AIPLLVELL-SSPDPRTQEHSVTALLNL 414

Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	897
147852653	1618	hypothetical protein VITISV_002973 [Viti	0.981	0.543	0.651	0.0
297738795	1154	unnamed protein product [Vitis vinifera]	0.862	0.670	0.737	0.0
357520957	1068	U-box domain-containing protein [Medicag	0.885	0.743	0.623	0.0
356511369	1421	PREDICTED: uncharacterized protein LOC10	0.847	0.534	0.621	0.0
356527773	1492	PREDICTED: uncharacterized protein LOC10	0.836	0.502	0.625	0.0
449449627	1336	PREDICTED: putative E3 ubiquitin-protein	0.895	0.601	0.569	0.0
326507154	1375	predicted protein [Hordeum vulgare subsp	0.806	0.525	0.529	0.0
357127715	1418	PREDICTED: uncharacterized protein LOC10	0.800	0.506	0.508	0.0
242051493	1404	hypothetical protein SORBIDRAFT_03g00087	0.809	0.517	0.492	0.0
255546423	1268	F-box and wd40 domain protein, putative	0.570	0.403	0.735	0.0

>gi|147852653|emb|CAN83797.1| hypothetical protein VITISV_002973 [Vitis vinifera]

 Score = 1174 bits (3036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 612/939 (65%), Positives = 728/939 (77%), Gaps = 59/939 (6%)

Query: 2    RDDVSVVVPCAKLLSKMSGSQASELKELERNYEELLDENCRVFASYFKQVLENSNDSGLI 61
            R + SVVV   +LLSKMSG Q SELK LER+YEE+LDENCR+   YF++VL N N S LI
Sbjct: 471  RFEESVVVSGTRLLSKMSGGQTSELKXLERDYEEVLDENCRLLVGYFREVLGNENGSRLI 530

Query: 62   IVTPPSVVLRKIEKVGGLHFDSEIESSLDK------HLNNSSYSSSDSDAE--ATDEQKN 113
               PPS++  K  K     F+ + ++ +++        NN +++  +   E  ++     
Sbjct: 531  --RPPSLIFEKXRKSDEFKFNEDEQNKVEEIGLGNGRYNNPTWTEGERSVEFYSSGSSSK 588

Query: 114  IRMASLEPRQ---RQIRKQKQP-----------------------------------IFV 135
             +     P++   + +R QK                                     I++
Sbjct: 589  SKSPPFYPQRVSLKILRNQKSSRTLSAISXNLNSGSELESSSEDNLSNSSSESEGSYIWI 648

Query: 136  ESSCSPDHLIM-ADADNPPGIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWI 194
                S    +M AD+D+PPG GK TPPKDF+CPIT+HIFDDPVTLETGQTYER+AIQEWI
Sbjct: 649  FPVISSPERVMAADSDDPPGGGKCTPPKDFICPITSHIFDDPVTLETGQTYERKAIQEWI 708

Query: 195  ERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDLSHSEPMSKS-------- 246
            +RGNS+CPITRQKL ST+LPKTNYVLKRLIASWQEQNPG + +    P  ++        
Sbjct: 709  DRGNSTCPITRQKLHSTQLPKTNYVLKRLIASWQEQNPGFISIHSDNPDPETDPIFNSTL 768

Query: 247  -IVPSNSPNSV-ISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELD 304
             ++PS SPNSV ISQAT+DGTI EL+ AIT LCMSEIL ESE AVL+IER W E +M L+
Sbjct: 769  PVLPSTSPNSVIISQATMDGTICELRLAITKLCMSEILRESEKAVLRIERFWQEMNMGLE 828

Query: 305  IQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVA 364
            IQ MLSKPAVINGFVEILFNSVDPRVL AT+FLL ELGSRDK+VI TLTRV+SDVE IVA
Sbjct: 829  IQTMLSKPAVINGFVEILFNSVDPRVLRATVFLLCELGSRDKTVIQTLTRVDSDVECIVA 888

Query: 365  LFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQ 424
            LFK GLLEAVVLI LLRPST +LIEMDM+ESL+ VIKKK++ FL+MCLKPK+ S+LLLGQ
Sbjct: 889  LFKNGLLEAVVLIHLLRPSTISLIEMDMVESLLVVIKKKQDGFLEMCLKPKTASILLLGQ 948

Query: 425  MIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIA 484
            ++G SE +IV+SIA T+VS+K  +S++ SLEAEWAEERIAAVGILLRCMQEDGKCR++IA
Sbjct: 949  ILGSSEGNIVTSIAKTVVSAKAIKSIVESLEAEWAEERIAAVGILLRCMQEDGKCRHTIA 1008

Query: 485  DKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLV 544
            DKAELAPV+ESFM ASDGERFEI+ F SELVKLNRRTFNEQ+LHIIKDEG +S+MHTLL+
Sbjct: 1009 DKAELAPVLESFMGASDGERFEIINFFSELVKLNRRTFNEQVLHIIKDEGAFSTMHTLLI 1068

Query: 545  YLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTI 604
            YLQTA  DQCPVVAGLLLQLDLL EPRKMSIYREEA+DTLISCLRNSD+PAAQ+AAA+TI
Sbjct: 1069 YLQTALQDQCPVVAGLLLQLDLLVEPRKMSIYREEAMDTLISCLRNSDFPAAQIAAAETI 1128

Query: 605  VSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEEKAADDWER 664
            VSLQGRF++SGKSLTRA LLKRAG+ KSY+ L + +Q+ N  GE ++  EEE+AAD+WER
Sbjct: 1129 VSLQGRFSSSGKSLTRASLLKRAGLDKSYRTLMQVDQLSNSSGESEENLEEEQAADEWER 1188

Query: 665  KMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGIFGAARVSL 724
            KMA VLVSH+FGLLFEAL EGL SR  EL+S+CF SATWLI+ML  LPDTGI GAARV L
Sbjct: 1189 KMAFVLVSHEFGLLFEALAEGLRSRNQELFSSCFMSATWLIHMLTVLPDTGIRGAARVCL 1248

Query: 725  LKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELRKYSPLAFE 784
            LK FIS FKSA   +++ALS+LAL+SF  DP+GL D+  HMKDI+KGLR+L+K   LA +
Sbjct: 1249 LKHFISMFKSAKGTEEKALSMLALSSFIHDPEGLNDLTSHMKDILKGLRQLKKSCILAVD 1308

Query: 785  MVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI 844
            M+KV S G++SS D WNH+ELV VD S NG+VLSI CFRDKIFSGHSDGTIKVWTGRGSI
Sbjct: 1309 MLKVFSEGNNSSIDLWNHKELVQVDCSANGEVLSIVCFRDKIFSGHSDGTIKVWTGRGSI 1368

Query: 845  LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRS 883
            LHLI + REHTKAVT LAIL+SGE LYSGSLD+TAR+ S
Sbjct: 1369 LHLIHETREHTKAVTSLAILESGERLYSGSLDRTARIWS 1407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738795|emb|CBI28040.3| unnamed protein product [Vitis vinifera]

 Score = 1161 bits (3004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/784 (73%), Positives = 673/784 (85%), Gaps = 10/784 (1%)

Query: 110 EQKNIRMASLEPRQRQIRKQKQPIFVESSCSPDHLIMADADNPPGIGKHTPPKDFVCPIT 169
           ++KN +MA  EPR+ QI+KQKQPI+ ESS SP+ ++ AD+D+PPG GK TPPKDF+CPIT
Sbjct: 160 QKKNRKMALFEPRRSQIQKQKQPIYAESSSSPERVMAADSDDPPGGGKCTPPKDFICPIT 219

Query: 170 THIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQE 229
           +HIFDDPVTLETGQTYER+AIQEWI+RGNS+CPITRQKL ST+LPKTNYVLKRLIASWQE
Sbjct: 220 SHIFDDPVTLETGQTYERKAIQEWIDRGNSTCPITRQKLHSTQLPKTNYVLKRLIASWQE 279

Query: 230 QNPGGLDLSHSEPMSKS---------IVPSNSPNSVI-SQATIDGTITELKHAITSLCMS 279
           QNPG + +    P  ++         ++PS SPNSVI SQAT+DGTI EL+ AIT LCMS
Sbjct: 280 QNPGFISIHSDNPDPETDPIFNSTLPVLPSTSPNSVIISQATMDGTICELRLAITKLCMS 339

Query: 280 EILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLS 339
           EIL ESE AVL+IER W E +M L+IQ MLSKPAVINGFVEILFNSVDPRVL AT+FLL 
Sbjct: 340 EILRESEKAVLRIERFWQEMNMGLEIQTMLSKPAVINGFVEILFNSVDPRVLRATVFLLC 399

Query: 340 ELGSRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTV 399
           ELGSRDK+VI TLTRV+SDVE IVALFK GLLEAVVLI LLRPST +LIEMDM+ESL+ V
Sbjct: 400 ELGSRDKTVIQTLTRVDSDVECIVALFKNGLLEAVVLIHLLRPSTISLIEMDMVESLLVV 459

Query: 400 IKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWA 459
           IKKK++ FL+MCLKPK+ S+LLLGQ++G SE +IV+SIA T+VS+K  +S++ SLEAEWA
Sbjct: 460 IKKKQDGFLEMCLKPKTASILLLGQILGSSEGNIVTSIAKTVVSAKAIKSIVESLEAEWA 519

Query: 460 EERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNR 519
           EERIAAVGILLRCMQEDGKCR++IADKAELAPV+ESFM ASDGERFEI+ F SELVKLNR
Sbjct: 520 EERIAAVGILLRCMQEDGKCRHTIADKAELAPVLESFMGASDGERFEIINFFSELVKLNR 579

Query: 520 RTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREE 579
           RTFNEQ+LHIIKDEG +S+MHTLL+YLQTA  DQCPVVAGLLLQLDLL EPRKMSIYREE
Sbjct: 580 RTFNEQVLHIIKDEGAFSTMHTLLIYLQTALQDQCPVVAGLLLQLDLLVEPRKMSIYREE 639

Query: 580 AIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRT 639
           A+DTLISCLRNSD+PAAQ+AAA+TIVSLQGRF++SGKSLTRA LLKRAG+ KSY+ L + 
Sbjct: 640 AMDTLISCLRNSDFPAAQIAAAETIVSLQGRFSSSGKSLTRASLLKRAGLDKSYRTLMQV 699

Query: 640 EQIGNICGEDDDTSEEEKAADDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFE 699
           +Q+ N  GE ++  EEE+AAD+WERKMA VLVSH+FGLLFEAL EGL SR  EL+S+CF 
Sbjct: 700 DQLSNSSGESEENLEEEQAADEWERKMAFVLVSHEFGLLFEALAEGLRSRNQELFSSCFL 759

Query: 700 SATWLIYMLNFLPDTGIFGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLR 759
           SATWLI+ML  LPDTGI GAARV LLK FIS FKSA   +++ALS+LAL+SF  DP+GL 
Sbjct: 760 SATWLIHMLTVLPDTGIRGAARVCLLKHFISMFKSAKGTEEKALSMLALSSFIHDPEGLN 819

Query: 760 DINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSI 819
           D+  HMKDI+KGLR+L+K   LA +M+KV S G++SS D WNH+ELV VD S NG+VLSI
Sbjct: 820 DLTSHMKDILKGLRQLKKSCILAVDMLKVFSEGNNSSIDLWNHKELVQVDCSANGEVLSI 879

Query: 820 ACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTA 879
            CFRDKIFSGHSDGTIKVWTGRGSILHLI + REHTKAVT LAIL+SGE LYSGSLD+TA
Sbjct: 880 VCFRDKIFSGHSDGTIKVWTGRGSILHLIHETREHTKAVTSLAILESGERLYSGSLDRTA 939

Query: 880 RVRS 883
           R+ S
Sbjct: 940 RIWS 943

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520957|ref|XP_003630767.1| U-box domain-containing protein [Medicago truncatula] gi|355524789|gb|AET05243.1| U-box domain-containing protein [Medicago truncatula]

 Score =  985 bits (2547), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/818 (62%), Positives = 630/818 (77%), Gaps = 24/818 (2%)

Query: 84  EIESSLDKHLNNSSYSSSDSDAEATDEQKNIRMASLEPRQRQI--RKQKQPIFVESSCSP 141
           E + SLD++L  SS     SD+EA +E+K+  +A LEPRQ Q   ++Q Q IF ES  SP
Sbjct: 76  ETQFSLDENLLCSS-----SDSEAENEEKDKNVALLEPRQSQSQNKEQIQTIFKESRGSP 130

Query: 142 DHLIMADADNPP--GIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNS 199
           D+  MAD +N P  G GK TPPKDFVCPIT++IFDDPVTLETGQTYER+AI+EW  R N 
Sbjct: 131 DY-PMADYENTPPHGSGKQTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRENI 189

Query: 200 SCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLD------LSHSEPMSKSIVPSNSP 253
           +CPITRQKL +TKLPKTNYVLKRL+ASW+E NP  +          SE + K+ +PS SP
Sbjct: 190 TCPITRQKLQNTKLPKTNYVLKRLVASWKEHNPSSVPPTCECPYKDSESVVKTEIPSTSP 249

Query: 254 NSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPA 313
           NSVI+QAT+DG I EL+ AI +L MSEIL ESEMA LQIE+ W   ++ +DI  MLSKP 
Sbjct: 250 NSVITQATVDGMIGELRCAINNLYMSEILQESEMAALQIEKLWRGGNLGVDIHSMLSKPP 309

Query: 314 VINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEA 373
           +INGFVEILFNSV+P+VL+A +FLL+E+GSRD SVI TLTRV++DVE I+ALFKKGL EA
Sbjct: 310 IINGFVEILFNSVEPQVLQAAVFLLAEMGSRDNSVIQTLTRVDTDVECIMALFKKGLTEA 369

Query: 374 VVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESI 433
           VVL+ +L PST TL EM ++ESL+ V  KKEED + MCL PK+ +VLLLGQ+IG S+E I
Sbjct: 370 VVLLYVLNPSTVTLTEMAVVESLIAVFNKKEEDLVNMCLNPKTAAVLLLGQIIGSSDEII 429

Query: 434 VSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVM 493
            SSI  T+ S K   +++ SL AEWAEERI AV ILLRCMQEDG CRN+IADKAEL+ +M
Sbjct: 430 ASSIVKTLFSEKALGAIVGSLGAEWAEERIVAVEILLRCMQEDGTCRNTIADKAELSSIM 489

Query: 494 ESFMAASDGERFEIVCFLSELVKLN-------RRTFNEQILHIIKDEGTYSSMHTLLVYL 546
           ESF+ A+D ERF+IV F SEL+KLN       RRTFNE+ILHIIK+EG +S+MHTLL++L
Sbjct: 490 ESFIHANDAERFKIVEFFSELIKLNSFQLVPSRRTFNERILHIIKEEGPFSTMHTLLIHL 549

Query: 547 QTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVS 606
           QTA  DQCPV+AGLLLQLDLL EPR MSIYREEAID+LISCLRNSD+P  QLAAA TI+S
Sbjct: 550 QTALQDQCPVMAGLLLQLDLLVEPRNMSIYREEAIDSLISCLRNSDFPTTQLAAADTIMS 609

Query: 607 LQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEEKAADDWERKM 666
           LQGRF+ SGK L R +LLKRAG+ K  ++  + + + N   E + T+EEE+AADDWERK+
Sbjct: 610 LQGRFSFSGKPLIREVLLKRAGIDKGPRSDVQVDHMSNFFSEIEITAEEERAADDWERKI 669

Query: 667 ALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGIFGAARVSLLK 726
           A VLVSH+FG+LFEAL +G+ SR  EL SACF SATWLIYML  LPDTGI GAARV LLK
Sbjct: 670 ASVLVSHEFGILFEALADGMKSRIPELRSACFISATWLIYMLTTLPDTGIQGAARVCLLK 729

Query: 727 RFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINI-HMKDIMKGLRELRKYSPLAFEM 785
            F++   SA DI+ R LS+LALNSF     GLRD+   + KDI+KGLREL+++SPLA EM
Sbjct: 730 PFVNKLNSAKDIEHRILSMLALNSFLHFSDGLRDLTASYAKDILKGLRELKRFSPLASEM 789

Query: 786 VKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSIL 845
           +KVL + ++   D W H+E++ VD   NG VLS+ CF+DKI SGH+DG+IKVWT + + L
Sbjct: 790 LKVLVDENEPKTDIWRHKEIIQVDCRGNGDVLSVICFKDKIISGHTDGSIKVWTLKDNEL 849

Query: 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRS 883
            L+Q+I+EHTKAVT L I + G+ LYSGSLD+TA++ S
Sbjct: 850 LLLQEIQEHTKAVTNLTISEPGDRLYSGSLDRTAKIWS 887

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511369|ref|XP_003524399.1| PREDICTED: uncharacterized protein LOC100787950 [Glycine max]

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/782 (62%), Positives = 604/782 (77%), Gaps = 22/782 (2%)

Query: 124  RQIRKQKQPIFVE---------------SSCSPDHLIMADADNP-PGIGKHTPPKDFVCP 167
            +++R+  +P FV                 +CS     MAD D P  GIGKH  PKDFVCP
Sbjct: 400  KRVRQYLRPFFVMLFHGVLHSFSLTWILPTCSSPDYPMADLDTPLHGIGKHAHPKDFVCP 459

Query: 168  ITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASW 227
            IT++IFDDPVTLETGQTYER+AI+EW  RGN +CPITRQKL +T+LPKTNYVLKRLIASW
Sbjct: 460  ITSYIFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTQLPKTNYVLKRLIASW 519

Query: 228  QEQNPGGLDLSHSEPMS------KSIVPSNSPNSVISQATIDGTITELKHAITSLCMSEI 281
            +++NP  +  S+  P        K  +PS SPNSVI+QAT+DG ++EL+ AI +L MSE+
Sbjct: 520  KDRNPHLVPPSYEIPYEETEEAVKLTIPSTSPNSVITQATVDGMMSELRCAINNLYMSEV 579

Query: 282  LNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSEL 341
            L ESEMAVLQIE+ W   ++ +DI  MLSKPA+INGF+EILFNSV+P+VL+A++FLL+E+
Sbjct: 580  LQESEMAVLQIEKFWRGVNVGVDIHSMLSKPAIINGFMEILFNSVEPQVLQASVFLLAEM 639

Query: 342  GSRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIK 401
            GSRD +VI TLTRV+SDVE I+ALFK GL EAVVL+ LL PST  L EM ++ESL+TV  
Sbjct: 640  GSRDNAVIKTLTRVDSDVECIMALFKNGLTEAVVLLYLLNPSTVNLAEMAIVESLITVFN 699

Query: 402  KKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEE 461
            KKEED +KMCLKPK+ +VLLL ++IG SEE I SS+ NT+ S K   +++ SL A  A+E
Sbjct: 700  KKEEDLVKMCLKPKTAAVLLLARIIGGSEEIISSSVVNTLFSEKAIGTIVGSLGANLAKE 759

Query: 462  RIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRT 521
            RIAAV ILLRCM+EDG  RN+IADKAEL P++E+ + A+DG+RF+I+ F SELVKLNRRT
Sbjct: 760  RIAAVEILLRCMEEDGTSRNNIADKAELTPLLETLIGATDGDRFKIIQFFSELVKLNRRT 819

Query: 522  FNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAI 581
            FNEQILHIIK+EG +S+MHTLL+YLQTA  DQCPV+AGLLLQLDLL EPRKMSIYREEA+
Sbjct: 820  FNEQILHIIKEEGPFSTMHTLLIYLQTALQDQCPVMAGLLLQLDLLVEPRKMSIYREEAM 879

Query: 582  DTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQ 641
            DTLISCLRN+D+P  QLAAA T++SLQG F  SG  LTR +LLKRAG+ KS ++L +  Q
Sbjct: 880  DTLISCLRNADFPVTQLAAADTVISLQGSFDFSGNPLTREVLLKRAGIEKSSRSLVQVNQ 939

Query: 642  IGNICGEDDDTSEEEKAADDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESA 701
            I N   E D T EEEKAADDWER++A VLVSH+FG LFEAL +G+ SR  EL SACF SA
Sbjct: 940  ISNFSPEIDITPEEEKAADDWERRIASVLVSHEFGTLFEALADGMKSRNPELRSACFISA 999

Query: 702  TWLIYMLNFLPDTGIFGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDI 761
            TWLIYML  LPDTGI  AAR  LLK+FI+   S  D++DR LS+LALNSF     GL D+
Sbjct: 1000 TWLIYMLTILPDTGIQVAARACLLKQFIAKLNSTKDVEDRILSMLALNSFLHFSDGLGDL 1059

Query: 762  NIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIAC 821
              + KDI+KGLREL++  PLA +M+KVL   ++S AD W H +L+  D SENG+VLS+ C
Sbjct: 1060 TSYTKDIIKGLRELKRSCPLATKMLKVLVEENESKADIWIHTQLIKEDCSENGEVLSVIC 1119

Query: 822  FRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
            F+DK FSGH+DGTIKVWT + ++ +L+Q+I+EHTKAVT L IL+S + LYSGSLD+TA+V
Sbjct: 1120 FKDKFFSGHTDGTIKVWTLKDNLFYLLQEIQEHTKAVTNLVILESDDRLYSGSLDRTAKV 1179

Query: 882  RS 883
             S
Sbjct: 1180 WS 1181

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527773|ref|XP_003532482.1| PREDICTED: uncharacterized protein LOC100808867 [Glycine max]

 Score =  950 bits (2455), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/759 (62%), Positives = 592/759 (77%), Gaps = 9/759 (1%)

Query: 134  FVESSCSPDHLIMADADNP-PGIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQE 192
            +V  +CS     MAD D P  GIGKH PPKDFVCPIT+HIFDDPVTLETGQTYER+AI+E
Sbjct: 391  WVVPTCSSPDYPMADFDTPLHGIGKHAPPKDFVCPITSHIFDDPVTLETGQTYERKAIEE 450

Query: 193  WIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDLSHSEPMS-------- 244
            W  RGN +CPITRQKL +T+LPKTNYVLKRLIASW+++NP  +      P          
Sbjct: 451  WFNRGNITCPITRQKLQNTQLPKTNYVLKRLIASWKDRNPHLVPPPCESPYEDTDEAVVI 510

Query: 245  KSIVPSNSPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELD 304
             + +PS SPNSVI+QAT+DG ++EL+ AI +L MSE+L ESEMAVLQI++ W   ++ +D
Sbjct: 511  PTTLPSTSPNSVITQATVDGMMSELRCAINNLYMSEVLQESEMAVLQIDKFWRGVNVGVD 570

Query: 305  IQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVA 364
            I  MLSKPA+INGF+EILFNSV+P+VL+A++FLL+E+GSRD +VI TLTRV++DVE I A
Sbjct: 571  IHSMLSKPAIINGFMEILFNSVEPQVLQASVFLLAEMGSRDNAVIKTLTRVDTDVECIKA 630

Query: 365  LFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQ 424
            LFK GL EAVVL+ LL PST +L EM ++ESL+TV  KKEED +KMCLKPK+ +VLLL +
Sbjct: 631  LFKNGLTEAVVLLYLLNPSTMSLAEMAIVESLITVFNKKEEDLVKMCLKPKTAAVLLLAR 690

Query: 425  MIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIA 484
            ++G SEE I SS+ NT+ S K   +++ SL A+ A+ERIAAV ILLRCM+EDG CRN+IA
Sbjct: 691  IVGSSEEIIASSVVNTLFSEKTIGTIVGSLGADLAKERIAAVEILLRCMEEDGTCRNNIA 750

Query: 485  DKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLV 544
            DKAEL+P++E+ + A+DG+RF+I+ F  ELVKLNRRTF EQILHIIK+EG +S+MHTLL+
Sbjct: 751  DKAELSPILETLIGATDGDRFKIIQFFFELVKLNRRTFIEQILHIIKEEGPFSTMHTLLI 810

Query: 545  YLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTI 604
            YLQTA  DQCPV+AGLLLQLDLL EPRKMSIYREEA+DTLISCLRN+D+P  QLAAA TI
Sbjct: 811  YLQTALQDQCPVMAGLLLQLDLLVEPRKMSIYREEAMDTLISCLRNTDFPVTQLAAADTI 870

Query: 605  VSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEEKAADDWER 664
            +SLQG F  SG   TR +LLKRAG+ KS ++L + +QI N   E D T EEEKAADDWER
Sbjct: 871  ISLQGSFDFSGNPRTREVLLKRAGIEKSSRSLVQVDQINNFSPEIDITPEEEKAADDWER 930

Query: 665  KMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGIFGAARVSL 724
            ++A VLVSH+FG LFEAL +G+ SR  EL SACF  ATWLIYML  LPDTGI  AAR  L
Sbjct: 931  RIASVLVSHEFGTLFEALADGMKSRNPELRSACFILATWLIYMLTILPDTGIHVAARACL 990

Query: 725  LKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELRKYSPLAFE 784
            LK+FI+    A D++DR LS+LALNSF     G  D+    KDI+KGLREL++  PLA +
Sbjct: 991  LKQFIAKLNCAKDVEDRILSMLALNSFLHFSDGFGDLTSFTKDIIKGLRELKRSCPLATK 1050

Query: 785  MVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI 844
            M+KVL   ++S A+ W H+EL+  D SENG+VLS+ CF+ K FSGH+DGT+KVWT + ++
Sbjct: 1051 MLKVLVEENESKAEIWIHKELIKEDCSENGEVLSVICFKGKFFSGHTDGTMKVWTLKDNL 1110

Query: 845  LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRS 883
              L+Q+I+EHTKAVT L I +S + LYSGSLD+TARV S
Sbjct: 1111 FCLMQEIQEHTKAVTNLVISESDDRLYSGSLDRTARVWS 1149

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449627|ref|XP_004142566.1| PREDICTED: putative E3 ubiquitin-protein ligase LIN-like [Cucumis sativus]

 Score =  885 bits (2286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/832 (56%), Positives = 607/832 (72%), Gaps = 29/832 (3%)

Query: 77   GGLHFDSEIESSLDKHLNNSSYSSSDSDAEATDE----QKNIRMASLEPRQRQIRKQKQP 132
            G L+F+ E ESS      + ++S  +S A+A D+    ++N    +L     + +K KQ 
Sbjct: 309  GPLNFNGEQESSS----GSKTFSIFNSAAQAQDDSSKIEENDGKTALFDSILETQKLKQT 364

Query: 133  I--FVESSCSPDHL--IMADADNP-PGIGK--HTPPKDFVCPITTHIFDDPVTLETGQTY 185
            I    ES      L   M D+ N  P  G+  +TP KDFVCPIT +IF DPVTLETGQTY
Sbjct: 365  ITSMEESGTKSAELDFAMEDSGNASPESGERYNTPSKDFVCPITCNIFYDPVTLETGQTY 424

Query: 186  ERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDLSHSEPMSK 245
            ER AIQEW+ERGNS+CPIT QKL +T+LPKTNYVLKRLIASW E+NP   + +  +P+ +
Sbjct: 425  ERSAIQEWLERGNSTCPITGQKLENTQLPKTNYVLKRLIASWLEENP---NFALDKPIDE 481

Query: 246  S--IVPSNSPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMEL 303
            +  +V   SP SVISQA+ID  + E++ AI +L  SE+L E+E AVL +ER WLE ++E+
Sbjct: 482  ADPLVVLTSPVSVISQASIDRGMKEVRRAIVNLYASEVLEEAEAAVLCVERFWLEENVEM 541

Query: 304  DIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIV 363
            DIQ+ML KP VING VEIL NSV+ +VL A IFLLSELG +D +VI TL+RVESDV+ IV
Sbjct: 542  DIQLMLLKPPVINGLVEILVNSVNEQVLSAAIFLLSELGFKDAAVIQTLSRVESDVDCIV 601

Query: 364  ALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLG 423
             LFK G +EAVVLI  L  S+++L EMDM+ SL+  IKK E D  KM L  KS +V+LL 
Sbjct: 602  TLFKGGFMEAVVLIYQLGLSSQSLQEMDMVGSLLNAIKKNERDVNKMRLSHKSAAVILLR 661

Query: 424  QMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSI 483
            +++G S+E   S IA  +++    E +I SL+A+  EERI+AVGILLRC+QEDG+CRN I
Sbjct: 662  KILGKSKEG--SLIAVVVLAENAIECIIGSLKAKQVEERISAVGILLRCIQEDGRCRNII 719

Query: 484  ADKAELAPVMESFMAASDGERFEIVCFLSELVKLNR-------RTFNEQILHIIKDEGTY 536
            AD A+LA V+ESF+  S+ E+FEI+ FLSELVKLNR       RTFNEQIL  IKD G Y
Sbjct: 720  ADTADLALVLESFIEVSNHEQFEIITFLSELVKLNRYVLLVTRRTFNEQILQNIKDGGEY 779

Query: 537  SSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAA 596
            S+MH+LL+YLQTA  DQ PVVAGLLLQLD+L EPRKMSIYREEA+D LISCL +SD+P+ 
Sbjct: 780  STMHSLLIYLQTARRDQSPVVAGLLLQLDVLVEPRKMSIYREEAMDILISCLGDSDFPST 839

Query: 597  QLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEE 656
            Q++AA+TI+SLQGRF+TSG+ LTR  LL+RAG  K ++   + + I +  GE + T EEE
Sbjct: 840  QISAAETIMSLQGRFSTSGRPLTRYFLLERAGFTKGHRKSIQRDTIRSAPGEVELTREEE 899

Query: 657  KAADDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGI 716
            +AAD+WERKMA VL+SHDFGLLFE L +GLNS+FA L+SACF SATWL +ML  LPDTGI
Sbjct: 900  RAADEWERKMAFVLISHDFGLLFEPLAKGLNSKFAALFSACFVSATWLSHMLRSLPDTGI 959

Query: 717  FGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELR 776
               ARV LL  F+S F +  D++++ L LLA+NSF  +P GL+ ++ +MKDIM+GLREL+
Sbjct: 960  LETARVCLLDHFLSIFTTTTDVEEKTLGLLAINSFVHEPDGLQCLSSNMKDIMRGLRELK 1019

Query: 777  KYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIK 836
            + +PLAFEM+KVL    D +++FW H+EL  VD S NG+VLSIA F+DKI SGHSDG IK
Sbjct: 1020 RSTPLAFEMLKVLCEEQDLTSEFWCHQELFQVDCSTNGEVLSIAYFKDKIISGHSDGRIK 1079

Query: 837  VWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFT 888
            VW  RG+ LHLI +++EH+K VT L +L+  E LYSGSLDKT +V S  S T
Sbjct: 1080 VWAVRGTNLHLIHEVQEHSKGVTSLVVLEFEEKLYSGSLDKTIKVWSLGSDT 1131

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326507154|dbj|BAJ95654.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/757 (52%), Positives = 533/757 (70%), Gaps = 34/757 (4%)

Query: 159  TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
            T PKDFVCPIT+ +FDDPVTLETGQTYERRAIQEW++RGN++CPITRQ L    LPKTNY
Sbjct: 405  TTPKDFVCPITSQVFDDPVTLETGQTYERRAIQEWLDRGNATCPITRQHLHGGSLPKTNY 464

Query: 219  VLKRLIASWQEQN-------------------PGGLDLSHSEPMSKSIVPS--------- 250
            VLKRLIA W+EQ+                   P    +    P  K   PS         
Sbjct: 465  VLKRLIAGWREQSPPATPITPATPPTPAVPRTPAPARMESPAPAFKINSPSPDTTGSQAS 524

Query: 251  -NSPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEA-SMELDIQIM 308
              SP SVI QAT++  ++EL+ A++ LC SE L ESE +VL+IER W EA + E      
Sbjct: 525  APSPTSVIVQATVESAVSELRAAVSCLCTSEELAESEKSVLRIERLWREAGAAEQAFFSA 584

Query: 309  LSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKK 368
            L+KPAVINGFVEILFNSV  +VL+  +FLL+EL SRD  V+ TLTRV++DV+ +VALFKK
Sbjct: 585  LAKPAVINGFVEILFNSVSAQVLQVAVFLLAELASRDDGVVQTLTRVDTDVDCLVALFKK 644

Query: 369  GLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEE-DFLKMCLKPKSVSVLLLGQMIG 427
            GL+EAVVLI LL PS   L+EMDM E+L+  I++ +E D L MC+KPKS SV+LL Q++ 
Sbjct: 645  GLVEAVVLIFLLSPSVEQLVEMDMGEALVATIRRADEADALNMCVKPKSASVILLSQILS 704

Query: 428  DS---EESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIA 484
            +S    ES      + +VS +   S    LEAE  E R+AA+ IL+RC+ EDG CR+SI 
Sbjct: 705  ESGVGRESTPPVPRSALVSERFVRSTALVLEAEQVEVRVAAMRILMRCVGEDGHCRSSIV 764

Query: 485  DKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLV 544
            +K  +  V+++F    D ++FEIV FLSEL+KL +R+  E++L  IK+  ++S MHTLLV
Sbjct: 765  EKLAVGAVLDAFHVVGDADKFEIVRFLSELLKLRKRSAAERVLRAIKEGSSFSMMHTLLV 824

Query: 545  YLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTI 604
            YLQ+   +Q PVVAGLLLQLDLL EPRK+S+YREEA+D+L+ CL+NSD+P +QL AA+TI
Sbjct: 825  YLQSTTPEQTPVVAGLLLQLDLLVEPRKISMYREEAMDSLVQCLKNSDFPRSQLLAAETI 884

Query: 605  VSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEEKAADDWER 664
            ++L G+F++SG+ L R+ LLK A V + Y++      +    G +DD + EEKAA +WER
Sbjct: 885  MNLPGKFSSSGRPLARSTLLKLARVKERYRHSQELSVVRGTDGAEDDAAGEEKAASEWER 944

Query: 665  KMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGIFGAARVSL 724
            K A  LVSH+FGL+ EAL E L S+ AEL++A    A WL++ML+ LPDTG+ GAARV L
Sbjct: 945  KTAYALVSHEFGLVLEALSECLESKNAELFAASLVCAAWLVHMLSLLPDTGVLGAARVCL 1004

Query: 725  LKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELRKYSPLAFE 784
            L++ +   +SA    DRAL+++AL SF  D +G++DI  ++KD+++ LREL+K S LAFE
Sbjct: 1005 LRQLVLVLRSAKHGSDRALAMVALRSFMNDREGMQDITTYIKDVLRTLRELKKSSGLAFE 1064

Query: 785  MVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI 844
            M+K+LS+G +SS D WNH+EL + D S NG+V SI  ++  IFSGHSDGT+KVW G  +I
Sbjct: 1065 MLKLLSDGQESSIDMWNHKELNNADCSSNGEVTSIVYYKSYIFSGHSDGTLKVWEGSENI 1124

Query: 845  LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
            L L+Q+ +EHTKA+T L+IL S E LYSGS+D+T RV
Sbjct: 1125 LRLVQESQEHTKAITSLSILPSEEKLYSGSMDRTIRV 1161

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357127715|ref|XP_003565524.1| PREDICTED: uncharacterized protein LOC100836629 [Brachypodium distachyon]

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/783 (50%), Positives = 530/783 (67%), Gaps = 65/783 (8%)

Query: 161  PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
            PKDFVCPIT+ +FDDPVTLETGQTYERRAIQEW++RGN++CPITRQ+L    LPKTNYVL
Sbjct: 426  PKDFVCPITSQVFDDPVTLETGQTYERRAIQEWLDRGNATCPITRQRLLGGALPKTNYVL 485

Query: 221  KRLIASWQEQ-------NPG---------------GLDLSHSEPMSK------------S 246
            KRLIA W++Q        P                G    H  P S             S
Sbjct: 486  KRLIAGWRDQITSSSPPQPATPRPSRPVTRMESAQGPAQDHPAPASPVKINSPSPDATGS 545

Query: 247  IVPSNSPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCW-LEASMELDI 305
               + SP SVI QA+++  + EL+ A++ LC SE L ESE +VL+I+R W  E++M    
Sbjct: 546  QASAPSPTSVIVQASVESAVGELRAAVSCLCTSEDLAESEKSVLKIDRLWRRESAMGAGA 605

Query: 306  Q--------IMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVES 357
                      +L+KPAVINGFVEILFNSV  +VL+  +FLL+EL SRD  V+ TLTRV++
Sbjct: 606  AEQKQHAFFSVLAKPAVINGFVEILFNSVSAQVLQVAVFLLAELASRDDGVVQTLTRVDA 665

Query: 358  DVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSV 417
            DV+ +VALFKKGLLEAVVLI LL PS   L+EMDM ++L++ +++ +ED L MC+KPK+ 
Sbjct: 666  DVDCLVALFKKGLLEAVVLIYLLSPSVEQLVEMDMADALVSAVRRGDEDPLDMCVKPKAA 725

Query: 418  SVLLLGQMIG-------DSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILL 470
            SV+LL Q++        DS + +  S    +VS +   S +  LEAE  E R+AA+ ILL
Sbjct: 726  SVILLSQILSEEAAGDRDSSQPVPRS---ALVSERFVRSTVMVLEAEQVEVRVAAMRILL 782

Query: 471  RCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHII 530
            RC+ EDG CR SI +K  L  V+++F    D ++F+IV FLSELVKL RR+  E++L  I
Sbjct: 783  RCVAEDGHCRGSIVEKLSLGAVLDAFHVVGDADKFDIVRFLSELVKLKRRSAAERVLRAI 842

Query: 531  KDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRN 590
            K+ G++S MHTLLVYLQ+   +Q PVVAGLLLQLDLL EPRK+S+YREEA+D+L+ CLRN
Sbjct: 843  KEGGSFSMMHTLLVYLQSTTPEQSPVVAGLLLQLDLLVEPRKISMYREEAVDSLVQCLRN 902

Query: 591  SDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYK-----------NLTRT 639
            SD+P +QL AA+TI++L G+F++SG+ L R+ LLK A V + Y+           ++ R 
Sbjct: 903  SDFPRSQLLAAETIMNLPGKFSSSGRPLARSSLLKLARVKERYRQPQSQSQSQELSVVRG 962

Query: 640  EQIGNICGEDD-DTSEEEKAADDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACF 698
                 + GED+   + E+K A +WERK A  LV H+FGL+FEAL E L S+ AEL+ A  
Sbjct: 963  TDGVGVGGEDEVVVAGEDKGASEWERKTAYALVGHEFGLVFEALSECLESKSAELFGASL 1022

Query: 699  ESATWLIYMLNFLPDTGIFGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGL 758
              A WL +ML  LPDTG+ GAAR  LL++ +   +SA    DRAL+++AL SF  D  G+
Sbjct: 1023 VCAAWLAHMLPVLPDTGVVGAARACLLRQLVIVLRSAKHGSDRALAMVALRSFMNDRDGM 1082

Query: 759  RDINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLS 818
            +DI  ++KD++K LREL+K S LAF+M+K+LS+G +SS D WNH+EL H D S NG+V S
Sbjct: 1083 QDIATYIKDVLKTLRELKKSSGLAFDMLKLLSDGQESSIDMWNHKELNHADCSSNGEVTS 1142

Query: 819  IACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT 878
            I  F+  IFSGHSDGT+KVW G  +IL L+ + +EHTKA++ L++L S E LYSGSLD+T
Sbjct: 1143 IVYFKSYIFSGHSDGTLKVWEGSENILRLVHESQEHTKAISSLSLLHSEEKLYSGSLDRT 1202

Query: 879  ARV 881
             RV
Sbjct: 1203 IRV 1205

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242051493|ref|XP_002454892.1| hypothetical protein SORBIDRAFT_03g000870 [Sorghum bicolor] gi|241926867|gb|EES00012.1| hypothetical protein SORBIDRAFT_03g000870 [Sorghum bicolor]

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/784 (49%), Positives = 536/784 (68%), Gaps = 58/784 (7%)

Query: 150  DNPPGIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLS 209
            D P   G    PKDFVCPIT+ +FDDPVTLETGQTYERRAIQEW++RGNS+CPITRQ+L 
Sbjct: 408  DTP---GPLPTPKDFVCPITSQVFDDPVTLETGQTYERRAIQEWLDRGNSTCPITRQRLH 464

Query: 210  STKLPKTNYVLKRLIASWQEQ----------------------------------NPGGL 235
              +LPKTNYVLKRLI +W +Q                                   P   
Sbjct: 465  GAQLPKTNYVLKRLIGAWWDQQPQPQRRSSPSPSPSPPPATPPPATIAMAGDSPATPPPF 524

Query: 236  DL-------SHSEPMSKSIVPSNSPNSVISQATIDGTITELKHAITSLCMSEILNESEMA 288
             L       S + P + +   + SP SVI+QA+++  + EL+ A++ LC SE L++SE +
Sbjct: 525  LLPVKAAATSSTSPDANTSASAPSPTSVIAQASLESAVAELRAAVSCLCTSEDLSQSERS 584

Query: 289  VLQIERCWLEASM------ELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELG 342
            VL+IER W +A+       E  I   L++PAV+NGFVEILFNSV  +VL   +FLL+EL 
Sbjct: 585  VLKIERLWRDATAAGSSEAEPAILAALARPAVVNGFVEILFNSVSAQVLRVAVFLLAELA 644

Query: 343  SRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKK 402
            SRD +V+ TLTRV+SDV+ + ALFKKGL EA VLI LL P+   L+EMD+ E+L+  I++
Sbjct: 645  SRDDAVVQTLTRVDSDVDCLAALFKKGLAEAAVLICLLSPAPEQLVEMDLAEALVATIRR 704

Query: 403  K-EEDFLKMCLKPKSVSVLLLGQMI----GDSEESIVSSIANTIVSSKVFESVISSLEAE 457
              +ED LKMC+ PK+ SV+LL Q++    G ++ S      + ++S +   S+ +SLEAE
Sbjct: 705  GGDEDPLKMCVSPKAASVILLSQILVEAAGATDSSTSPVPRSALLSERFIRSLAASLEAE 764

Query: 458  WAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKL 517
              EER+AA+ ILLRC+ EDG CR+SIA+KA L+ V+++F    D ++ +IV FL EL+KL
Sbjct: 765  PVEERLAAMRILLRCIWEDGHCRSSIAEKASLSAVLDAFHTVGDADKIDIVRFLYELLKL 824

Query: 518  NRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYR 577
             +R+  E++L  IK+  ++S MHT+LVYLQ+A  +  PVVAGLLLQLDLL EPRK+S+YR
Sbjct: 825  KKRSAAERLLRSIKEGSSFSMMHTMLVYLQSAPPEHAPVVAGLLLQLDLLVEPRKISMYR 884

Query: 578  EEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLT 637
            EEA+D LI CL+N+D+P  QL AA+TI+ L G+F++SG+ L R+ LLK A V + Y+   
Sbjct: 885  EEAVDCLIQCLKNTDFPRCQLLAAETIMCLPGKFSSSGRPLARSTLLKLARVKERYR--- 941

Query: 638  RTEQIGNICGEDDDTSEEEKAADDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSAC 697
            +++ +     + +D  EE K A DWERK A  +VSH+FGL+FEAL E L ++  EL++  
Sbjct: 942  QSQDLSAARADAEDEMEEGKTATDWERKAAYAVVSHEFGLVFEALSECLRTKNVELFTTS 1001

Query: 698  FESATWLIYMLNFLPDTGIFGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQG 757
               ATWL+YML+ LP+TG+ GAARV LL++F+   +SA    DR L+++AL SF  D +G
Sbjct: 1002 LVCATWLVYMLSLLPETGVLGAARVCLLRQFVVVLRSAKHGSDRVLAMVALRSFMNDREG 1061

Query: 758  LRDINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVL 817
            + DI  ++KD++K LREL+K S LAFEM+K+LS+G +SS D W+H+E+  VD S NG+V 
Sbjct: 1062 MHDITTYIKDVLKTLRELKKSSGLAFEMLKLLSDGQESSVDMWSHKEINQVDCSSNGEVT 1121

Query: 818  SIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK 877
            S+   ++ IFSGHSDGT+KVW G  +IL L+ + +EHTKA+T L++LQS E L+SGSLD+
Sbjct: 1122 SVVYLKNYIFSGHSDGTLKVWEGSENILRLVHEAQEHTKAITSLSVLQSEEKLFSGSLDR 1181

Query: 878  TARV 881
            + RV
Sbjct: 1182 SIRV 1185

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546423|ref|XP_002514271.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223546727|gb|EEF48225.1| F-box and wd40 domain protein, putative [Ricinus communis]

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/522 (73%), Positives = 443/522 (84%), Gaps = 10/522 (1%)

Query: 140 SPDHLIMADADNPPGIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNS 199
           S DH +M D DN PG GKHTPPKDFVCPIT+H+ DDPVTLETGQTYERRAIQEWI RGNS
Sbjct: 395 STDH-VMGDIDNHPGAGKHTPPKDFVCPITSHLLDDPVTLETGQTYERRAIQEWISRGNS 453

Query: 200 SCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP------GGLDLSHSEPMSKS--IVPSN 251
           +CPITRQ L S +LPKTNYVLKRL+ASW+EQNP             +EP  KS  I P  
Sbjct: 454 TCPITRQALHSNQLPKTNYVLKRLVASWREQNPEFASNQSETAPQKTEPNFKSTIISPVT 513

Query: 252 SPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSK 311
           SPNSVISQ+ ID T++EL+ AIT LCMSEIL+ESEMAVL+IE+ W E +M+LD+Q MLSK
Sbjct: 514 SPNSVISQSAIDSTMSELRQAITDLCMSEILSESEMAVLRIEQFWQELNMDLDVQSMLSK 573

Query: 312 PAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLL 371
           P VINGFVEILFNS+DP+VL+AT+FLLSELGSRDK V+ TLTRVESDVE IVALFK GL 
Sbjct: 574 PPVINGFVEILFNSLDPQVLKATVFLLSELGSRDKGVVQTLTRVESDVECIVALFKNGLW 633

Query: 372 EAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEE 431
           EAVVLI LLRPST +L+EMD++ESL+TVIKKKE D LKMCLKPK+ +VLLLGQ++  SEE
Sbjct: 634 EAVVLIYLLRPSTMSLLEMDLVESLLTVIKKKE-DMLKMCLKPKTAAVLLLGQILSSSEE 692

Query: 432 SIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAP 491
           SIV SI N IVS+KV ES+   LEAE AEERIAAVGIL RCMQE GKCRN+I+ KAELAP
Sbjct: 693 SIVISIVNAIVSTKVIESIAGCLEAECAEERIAAVGILSRCMQEHGKCRNTISAKAELAP 752

Query: 492 VMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANH 551
           V++SF++A+DGERFEIV F SELVKLNRRT +EQ+LHIIKDEG  S+MH+L+ +LQTA  
Sbjct: 753 VLDSFLSATDGERFEIVLFFSELVKLNRRTLSEQVLHIIKDEGPVSTMHSLVSFLQTALQ 812

Query: 552 DQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRF 611
           DQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLR S++ AAQ+AAA TIVSLQGRF
Sbjct: 813 DQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRKSEFTAAQIAAADTIVSLQGRF 872

Query: 612 TTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTS 653
           T SGKSL+RA+LLKRAG+ KSY+NLTR E++GN+ GE ++TS
Sbjct: 873 TASGKSLSRAILLKRAGLSKSYRNLTRMEKLGNLSGEIEETS 914

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	897
TAIR|locus:2013990	628	AT1G71020 [Arabidopsis thalian	0.332	0.474	0.270	6.4e-15
UNIPROTKB|Q0IMG9	694	SPL11 "E3 ubiquitin-protein li	0.113	0.146	0.421	7.1e-14
TAIR|locus:2017719	612	AT1G23030 [Arabidopsis thalian	0.406	0.596	0.25	3e-13
TAIR|locus:2075140	660	PUB13 "plant U-box 13" [Arabid	0.092	0.125	0.494	1.5e-12
UNIPROTKB|Q5VRH9	611	PUB12 "U-box domain-containing	0.112	0.165	0.405	3.6e-12
TAIR|locus:2082682	632	PUB14 "plant U-box 14" [Arabid	0.206	0.292	0.307	3.8e-12
TAIR|locus:2032472	771	AT1G24330 [Arabidopsis thalian	0.102	0.119	0.432	5.5e-12
TAIR|locus:2010424	768	PUB45 "plant U-box 45" [Arabid	0.186	0.217	0.311	8.6e-12
TAIR|locus:2012136	421	PUB26 "plant U-box 26" [Arabid	0.230	0.491	0.292	4e-11
TAIR|locus:2014584	811	PUB43 "plant U-box 43" [Arabid	0.333	0.368	0.236	4.2e-11

TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 6.4e-15, Sum P(2) = 6.4e-15
 Identities = 92/340 (27%), Positives = 156/340 (45%)

Query:   159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
             T P+DF+CPI+  +  DP  + TGQTYER  IQ WI+ GN SCP T+QKL +  L   NY
Sbjct:   242 TIPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFTLTP-NY 300

Query:   219 VLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSPNSVISQATIDGTITELKHAITSLCM 278
             VL+ LI+ W  +        H+       +   + NS  S   + G ++ ++  +  L  
Sbjct:   301 VLRSLISQWCTK--------HNIEQPGGYMNGRTKNSDGSFRDLSGDMSAIRALVCKLS- 351

Query:   279 SEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLL 338
             S+ + +   AV +I      +    D +I++++   I   V++L +  D    E  +  +
Sbjct:   352 SQSIEDRRTAVSEIRSL---SKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCI 408

Query:   339 SELGSRDKSVIHTLTRVESDVERIVALFKKGLLEA-----VVLIDL-LRPSTRTLIE--- 389
               L   + +    L  +   V  IV + + G +EA       L  L L    + +I    
Sbjct:   409 LNLSIYEHN--KELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGASG 466

Query:   390 --MDMMESLM--TVIKKKEED--FLKMCL----KPKSVS---VLLLGQMIGDSEESIVSS 436
               M +++ L   +V  KK+       +C+    K ++V    V  L +M+ DS    ++ 
Sbjct:   467 AIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMAD 526

Query:   437 IANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQED 476
              A TI+S      + S+  A+ A  R  A+  L+ C+Q+D
Sbjct:   527 EALTILSV-----LASNQVAKTAILRANAIPPLIDCLQKD 561

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 210 (79.0 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
 Identities = 48/114 (42%), Positives = 68/114 (59%)

Query:   159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
             T P +F CPI+  +  DPV + TGQTYER  I++WI  G+ +CP T+QK+S++ L   NY
Sbjct:   272 TIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTP-NY 330

Query:   219 VLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSPNSVIS---QATIDGTITEL 269
             VL+ LI+ W E N  G+     EP  +S  P N P    S   +A ID  +++L
Sbjct:   331 VLRSLISQWCETN--GM-----EPPKRSTQP-NKPTPACSSSERANIDALLSKL 376

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0048586 "regulation of long-day photoperiodism, flowering" evidence=IMP

TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 3.0e-13, P = 3.0e-13
 Identities = 99/396 (25%), Positives = 173/396 (43%)

Query:   142 DHLIMADADNPPGIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSC 201
             D ++  + D      K T P DF+CP++  +  DPV + TGQTYER  IQ WI+ GN +C
Sbjct:   223 DKMVNKNTDESKKSDKLTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTC 282

Query:   202 PITRQKLSSTKLPKTNYVLKRLIASW-QEQN---PGGLDLSHSEPMSKSIVPSNSPNSVI 257
             P T+QKL +  L   NYVL+ LI+ W  E N   P G     ++      V       + 
Sbjct:   283 PKTQQKLENFTLTP-NYVLRSLISRWCAEHNIEQPAGYINGRTKNSGDMSVIRALVQRLS 341

Query:   258 SQATID--GTITELKHAITSLCMSEILNESEMAV-LQIERCWLE--ASMELDIQIMLSKP 312
             S++T D    ++E++        + IL     A+ + +     E  A+ E  I  +L+  
Sbjct:   342 SRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQENAITCVLNLS 401

Query:   313 AVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLE 372
                N    I+F      +++  +     + +R+ +     +   +D  +I+ +   G + 
Sbjct:   402 IYENNKELIMFAGAVTSIVQ--VLRAGTMEARENAAATLFSLSLADENKII-IGGSGAIP 458

Query:   373 AVVLIDLLRPSTRTLIEMDMMESL--MTVIKKKEEDFLKMCLKPKSVSVL---LLGQMIG 427
             A  L+DLL   T    + D   +L  + +    +   ++  +    V +L      +M+ 
Sbjct:   459 A--LVDLLENGTPRG-KKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMV- 514

Query:   428 DSEESIVSSIANT------IVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRN 481
             D   +I+S +AN       IV +    ++I  L+ +    R  A  ILL   + D +   
Sbjct:   515 DEALTILSVLANNQDAKSAIVKANTLPALIGILQTDQTRNRENAAAILLSLCKRDTEKLI 574

Query:   482 SIADKAELAPVME-SFMAASDGERFEIVCFLSELVK 516
             +I     + P+M+ S      G+R  I   L EL++
Sbjct:   575 TIGRLGAVVPLMDLSKNGTERGKRKAIS--LLELLR 608

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 44/89 (49%), Positives = 58/89 (65%)

Query:   161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
             P DF CPI+  +  DPV + +GQTYER  I++WIE G+S+CP T+Q L+ST L   NYVL
Sbjct:   257 PDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLTP-NYVL 315

Query:   221 KRLIASWQEQNPGGLDLSHSEPMSKSIVP 249
             + LIA W E N    D+   +P S S+ P
Sbjct:   316 RSLIAQWCEAN----DIEPPKPPS-SLRP 339

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 199 (75.1 bits), Expect = 3.6e-12, P = 3.6e-12
 Identities = 43/106 (40%), Positives = 62/106 (58%)

Query:   142 DHLIMADADNPPGIGKHTP--PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNS 199
             DH   A       I   +P  P +F CPI+  +  DPV + +GQTYER  IQ+W++ G+ 
Sbjct:   208 DHANDALTTRSASIKHRSPIIPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHK 267

Query:   200 SCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDLSHSEPMSK 245
             +CP T+Q LS T L   N+VLK LI+ W E N  G++L  ++  S+
Sbjct:   268 TCPKTQQPLSHTSLTP-NFVLKSLISQWCEAN--GIELPKNKQNSR 310

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
 Identities = 64/208 (30%), Positives = 104/208 (50%)

Query:   142 DHLIMADADNPPGIG-----KH-TP--PKDFVCPITTHIFDDPVTLETGQTYERRAIQEW 193
             D + M  +D  P  G     +H +P  P+ F CPI+  +  DPV + TGQTYER +IQ+W
Sbjct:   222 DFVTMESSDPDPSTGSRIVSRHRSPVIPEYFRCPISLELMKDPVIVSTGQTYERSSIQKW 281

Query:   194 IERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSP 253
             ++ G+ +CP +++ L    L   NYVLK LIA W E N  G++L  ++   ++     S 
Sbjct:   282 LDAGHKTCPKSQETLLHAGLTP-NYVLKSLIALWCESN--GIELPQNQGSCRTTKIGGSS 338

Query:   254 NSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPA 313
             +S   +  +   + +L +  T         E + A     R  L A   +D ++ +++  
Sbjct:   339 SSDCDRTFVLSLLEKLANGTT---------EQQRAAAGELR--LLAKRNVDNRVCIAEAG 387

Query:   314 VINGFVEILFNSVDPRVLEATIFLLSEL 341
              I   VE+L +S DPR  E ++  L  L
Sbjct:   388 AIPLLVELL-SSPDPRTQEHSVTALLNL 414

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2032472 AT1G24330 [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
 Identities = 45/104 (43%), Positives = 62/104 (59%)

Query:   160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
             PP++  CPI+  +  DPV + +GQTYER  I++W   G++SCP T+Q+L    L   NY 
Sbjct:   275 PPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNSCPKTQQQLPHLSLTP-NYC 333

Query:   220 LKRLIASWQEQN--------PGGLDLSHSEPMSKSIVPSNSPNS 255
             +K LIASW EQN        P  LDL++   ++ S   S SPNS
Sbjct:   334 VKGLIASWCEQNGITVPTGPPESLDLNYWR-LAMS--DSESPNS 374

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2010424 PUB45 "plant U-box 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 8.6e-12, P = 8.6e-12
 Identities = 58/186 (31%), Positives = 94/186 (50%)

Query:   160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
             PP++  CPI+  +  DPV + +GQTYER  I++W   G+++CP T Q+LS   L   NY 
Sbjct:   279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTHQQLSHLCLTP-NYC 337

Query:   220 LKRLIASWQEQN----PGG----LDLSHSEPMSKSIVPSNSPNSV--ISQATI-DGTITE 268
             +K LI+SW EQN    P G    LDL++   ++ S+  S    S   +    + D  +  
Sbjct:   338 VKALISSWCEQNGVQVPDGPPESLDLNYWR-LALSVSESTDTRSAKRVGSCKLKDVKVVP 396

Query:   269 LKHAIT---SLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNS 325
             L+ + T     C SE   E ++ +  +ERC    +   D+  +  K  V+     +L + 
Sbjct:   397 LEESGTIKEEACESEY-QEDQVTL--VERCTELLTTLTDVDTLRKKCRVVEQIRVLLKDD 453

Query:   326 VDPRVL 331
              + R+L
Sbjct:   454 EEARIL 459

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

TAIR|locus:2012136 PUB26 "plant U-box 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
 Identities = 64/219 (29%), Positives = 106/219 (48%)

Query:   161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS-TKLPKTNYV 219
             P  F CPI+  +  DPVT+ TGQTY+R +I  WI  GN++CP+TR  LS  T +P  N+ 
Sbjct:    15 PYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRVALSDFTLIP--NHT 72

Query:   220 LKRLIASWQEQN-PGGLDLSHSEPMSKSIVPSNSPNSVISQAT-IDGTITELKHAITSLC 277
             L+RLI  W   N   G++     P  K      S  S++SQA+ I GT   ++    ++ 
Sbjct:    73 LRRLIQEWCVANRSNGVERI---PTPKQPADPISVRSLLSQASAITGTHVSVRSRAAAIR 129

Query:   278 -MSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIF 336
              +  +  +SE   + I       + E+ ++I+ +     +   E++  S+   VL     
Sbjct:   130 RLRGLARDSEKNRVLIAG---HNAREILVRILFADIETTSLSSELVSESLALLVLLHMTE 186

Query:   337 LLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEAVV 375
                E  + D S +  +TR+  D    + +    L+E V+
Sbjct:   187 TECEAVASDPSRVGFMTRLLFDSSIEIRVNAAALIEMVL 225

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2014584 PUB43 "plant U-box 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-11, P = 4.2e-11
 Identities = 80/338 (23%), Positives = 155/338 (45%)

Query:   164 FVCPITTHIFDDPVTLETGQTYERRAIQEWIE--RGNS---SCPITRQKLSSTKLPKTNY 218
             F+CP+T  +  +PVTLE GQT+ER AI++W +  R N    SCPIT ++LS T L   + 
Sbjct:    29 FICPLTKQVMHNPVTLENGQTFEREAIEKWFQECRENGQPLSCPITSKELSITDL-SPSI 87

Query:   219 VLKRLIASWQEQNPG-GLDLSHSEPMSKSIVPSNSPNSVISQATIDGTITELKHAITSLC 277
              L+  I  W+ +N    LD++      +S+   N+  +++        + E+   I  + 
Sbjct:    88 ALRNTIEEWRARNDALKLDIAR-----QSLYLGNAETNILLALK---NVREICRNIRKI- 138

Query:   278 MSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFL 337
                + N     V  I      +S E+  + + +   V+ G  E      +   +   +  
Sbjct:   139 RQRVCNPQ--LVRLITDMLKSSSHEVRCKALQTLQVVVEGDEESKAIVAEGDTVRTIVKF 196

Query:   338 LSELGSRDK----SVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMM 393
             LS+  S+ +    SV+  L++ E+  E+I ++   G +  ++L+ L    +  +  ++  
Sbjct:   197 LSQEPSKGREAAVSVLFELSKSEALCEKIGSIH--GAI--ILLVGLTSSKSENVSTVEKA 252

Query:   394 ESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVS--------SIAN---TIV 442
             +  +T +++ EE+  +M +  +     LL +++  S E+ VS        ++ N    IV
Sbjct:   253 DKTLTNLERSEENVRQMAINGRLQP--LLAKLLEGSPETKVSMAFYLGVLALNNDVKVIV 310

Query:   443 SSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCR 480
             +  V  S+I  +      +R AA+G L      +G  +
Sbjct:   311 AQTVGSSLIDLMRTRDMSQREAALGALNNISSFEGSAK 348

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016710001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (958 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	897
smart00504	63	smart00504, Ubox, Modified RING finger domain	8e-20
pfam04564	73	pfam04564, U-box, U-box domain	4e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-05
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	1e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
pfam11789	57	pfam11789, zf-Nse, Zinc-finger of the MIZ type in	3e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.002

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score = 83.4 bits (207), Expect = 8e-20
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 4/66 (6%)

Query: 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL-PKTNYVLK 221
           +F+CPI+  +  DPV L +GQTYER AI++W+   + + P+T Q L+   L P  N  LK
Sbjct: 1   EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLS-HGTDPVTGQPLTHEDLIP--NLALK 57

Query: 222 RLIASW 227
             I  W
Sbjct: 58  SAIQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score = 70.4 bits (173), Expect = 4e-15
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
           P +F+ PIT  +  DPV L +G TY+R  I+  +   + + P TR+ L+  +L   N  L
Sbjct: 2   PDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQL-IPNLEL 60

Query: 221 KRLIASWQEQNP 232
           K  I +W E+N 
Sbjct: 61  KEKIDAWLEENR 72

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 12/102 (11%)

Query: 787 KVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDK--IFSGHSDGTIKVW---T 839
           K+LS+  D +   W+    + +         V S+A   D   + SG  DGTI+VW   T
Sbjct: 191 KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250

Query: 840 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
           G       +Q +  HT +VT LA    G+ L SGS D T R+
Sbjct: 251 GE-----CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 787 KVLSNGHDSSADFWN--HRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG 842
            + +   D +   W+    EL+       G V  +A   D   + SG SD TI++W    
Sbjct: 23  LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82

Query: 843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
                ++ +  HT  V+ +A    G +L S S DKT +V
Sbjct: 83  G--ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 24/107 (22%)

Query: 788 VLSNGHDSSADFWN------------HRELV-HVDSSENGKVLSIACFRDKIFSGHSDGT 834
           + S+  D +   W+            H + V  V  S +G  ++         S   DGT
Sbjct: 108 LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA---------SSSQDGT 158

Query: 835 IKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
           IK+W         +  +  HT  V  +A    GE L S S D T ++
Sbjct: 159 IKLW--DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 51.2 bits (123), Expect = 9e-07
 Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 20/106 (18%)

Query: 787 KVLSNGHDSSADFWN------HRELVHVDSSENGKVLSIACFRDK--IFSGHSDGTIKVW 838
            + S   D +   W+       R L    S     V S+A   D   + S   D TIKVW
Sbjct: 65  YLASGSSDKTIRLWDLETGECVRTLTGHTSY----VSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 839 ---TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
              TG+      +  +R HT  V  +A    G  + S S D T ++
Sbjct: 121 DVETGK-----CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 10/74 (13%)

Query: 813 NGKVLSIACFRDK--IFSGHSDGTIKVW---TGRGSILHLIQQIREHTKAVTGLAILQSG 867
            G V  +A   D   + +G  DGTIKVW   TG      L++ ++ HT  V  +A    G
Sbjct: 9   TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----LLRTLKGHTGPVRDVAASADG 63

Query: 868 EMLYSGSLDKTARV 881
             L SGS DKT R+
Sbjct: 64  TYLASGSSDKTIRL 77

Length = 289

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 164 FVCPITTHIFDD----PVTLETGQTYERRAIQEWIERGNS-SCPI 203
           FVCPI+  +  D    PV L  G  Y R+A+++  + G    CP 
Sbjct: 11  FVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCPY 55

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 5/103 (4%)

Query: 788 VLSNGHDSSADFWN----HRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGS 843
           + S   D +   W+          +    +  V S +     + SG SDGTI++W  R S
Sbjct: 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSS 273

Query: 844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDS 886
              L++ +  H+ +V  +A    G++L SGS D T R+   ++
Sbjct: 274 -SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
            L++ ++ HT  VT +A    G+ L SGS D T ++
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKL 38

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 163 DFVCPITTHIFDDPVTLET-GQTYERRAIQEWIERGNSS-CPI 203
              CP+T   F++PVT +     +E+ AI   + R  +  CP+
Sbjct: 11  SLTCPLTLQPFEEPVTSKKCNHVFEKDAILSMLRRNKTVKCPV 53

Nse1 and Nse2 are novel non-SMC subunits of the fission yeast Smc5-6 DNA repair complex. This family is the zinc-finger domain similar to the MIZ type of zinc-finger. Length = 57

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
           L++ ++ HT  VT +A    G +L SGS D T RV
Sbjct: 3   LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRV 37

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 6/100 (6%)

Query: 788 VLSNGHDSSADFWN---HRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG 842
           + S   D +   W+      L+   S  +  VLS+A   D   + SG SDGT+++W    
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315

Query: 843 SILHLIQQIREHTKAVTGLAILQSGEMLYSG-SLDKTARV 881
             L     ++ H   V+ L+    G +L SG S D T R+
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	897
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.79
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.76
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.76
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.73
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.72
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.72
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.71
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.7
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.68
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.68
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.66
KOG0266	456	consensus WD40 repeat-containing protein [General	99.66
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.65
KOG0286	343	consensus G-protein beta subunit [General function	99.65
PTZ00421	493	coronin; Provisional	99.65
KOG0286	343	consensus G-protein beta subunit [General function	99.65
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.64
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.63
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.63
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.62
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.62
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.61
KOG0645	312	consensus WD40 repeat protein [General function pr	99.6
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.6
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.6
KOG0266	456	consensus WD40 repeat-containing protein [General	99.57
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.57
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.57
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.57
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.57
PTZ00420	568	coronin; Provisional	99.57
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.56
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.56
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.56
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.53
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.53
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.52
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.5
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.5
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.49
KOG0645	312	consensus WD40 repeat protein [General function pr	99.49
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.49
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.48
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.48
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.48
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.47
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.46
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.46
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.44
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.44
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.44
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.43
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.43
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.43
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.43
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.43
PTZ00421	493	coronin; Provisional	99.42
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.42
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.42
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.42
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.41
KOG0646	476	consensus WD40 repeat protein [General function pr	99.4
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.39
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.39
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.38
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.38
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.37
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.37
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.37
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.37
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.37
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.36
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.35
KOG0289	506	consensus mRNA splicing factor [General function p	99.35
PLN00181	793	protein SPA1-RELATED; Provisional	99.35
KOG0296	399	consensus Angio-associated migratory cell protein	99.34
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.34
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.34
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.33
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.32
KOG0267	825	consensus Microtubule severing protein katanin p80	99.31
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.31
PLN00181	793	protein SPA1-RELATED; Provisional	99.31
PTZ00420	568	coronin; Provisional	99.31
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.31
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.29
KOG0643	327	consensus Translation initiation factor 3, subunit	99.28
KOG0643	327	consensus Translation initiation factor 3, subunit	99.28
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.28
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.27
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.27
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.27
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.27
KOG0639	705	consensus Transducin-like enhancer of split protei	99.26
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.26
KOG0267	825	consensus Microtubule severing protein katanin p80	99.26
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.24
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	99.24
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.22
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.22
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.21
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.21
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.21
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.2
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.19
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.18
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.18
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.17
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.17
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.17
KOG0641	350	consensus WD40 repeat protein [General function pr	99.17
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.15
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.14
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.14
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.13
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.13
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.12
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.12
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.11
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.1
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.1
KOG2096	420	consensus WD40 repeat protein [General function pr	99.1
KOG0646	476	consensus WD40 repeat protein [General function pr	99.07
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.06
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.06
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.06
KOG0649	325	consensus WD40 repeat protein [General function pr	99.06
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.05
KOG0296	399	consensus Angio-associated migratory cell protein	99.04
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.04
KOG1310	758	consensus WD40 repeat protein [General function pr	99.03
KOG0641	350	consensus WD40 repeat protein [General function pr	99.02
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.01
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.0
KOG1274	933	consensus WD40 repeat protein [General function pr	98.99
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.99
KOG1539	910	consensus WD repeat protein [General function pred	98.98
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	98.93
KOG0288	459	consensus WD40 repeat protein TipD [General functi	98.93
KOG0289	506	consensus mRNA splicing factor [General function p	98.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	98.93
COG5222	427	Uncharacterized conserved protein, contains RING Z	98.92
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	98.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	98.9
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.89
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.88
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.88
KOG1273	405	consensus WD40 repeat protein [General function pr	98.88
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.87
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.84
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.82
KOG0639	705	consensus Transducin-like enhancer of split protei	98.79
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.79
KOG4328	498	consensus WD40 protein [Function unknown]	98.76
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	98.75
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.74
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.74
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.73
KOG1274	933	consensus WD40 repeat protein [General function pr	98.72
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	98.71
KOG4227	609	consensus WD40 repeat protein [General function pr	98.7
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	98.7
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.68
KOG2048	691	consensus WD40 repeat protein [General function pr	98.67
KOG0649	325	consensus WD40 repeat protein [General function pr	98.65
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.65
KOG2096	420	consensus WD40 repeat protein [General function pr	98.65
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.64
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	98.63
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.61
KOG1273	405	consensus WD40 repeat protein [General function pr	98.59
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.59
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.58
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.58
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	98.58
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.57
KOG1188	376	consensus WD40 repeat protein [General function pr	98.56
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.55
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.54
KOG4328	498	consensus WD40 protein [Function unknown]	98.54
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.54
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.53
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.53
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.52
PHA02929	238	N1R/p28-like protein; Provisional	98.52
COG2319	466	FOG: WD40 repeat [General function prediction only	98.52
KOG2048	691	consensus WD40 repeat protein [General function pr	98.5
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.48
KOG4367	699	consensus Predicted Zn-finger protein [Function un	98.47
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.46
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	98.44
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	98.44
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.43
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	98.42
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.42
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.41
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.4
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.4
KOG1539	910	consensus WD repeat protein [General function pred	98.38
COG2319	466	FOG: WD40 repeat [General function prediction only	98.38
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	98.37
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.36
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.34
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.32
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.32
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.3
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	98.29
PHA02926	242	zinc finger-like protein; Provisional	98.28
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.25
PF14634	44	zf-RING_5: zinc-RING finger domain	98.25
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.25
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.24
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.22
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.22
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.21
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.21
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.2
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.19
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.19
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.19
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.17
KOG1188	376	consensus WD40 repeat protein [General function pr	98.16
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.15
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.15
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.11
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.1
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.09
KOG1310	758	consensus WD40 repeat protein [General function pr	98.09
KOG2660	331	consensus Locus-specific chromosome binding protei	98.08
KOG2106	626	consensus Uncharacterized conserved protein, conta	98.05
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.03
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.03
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.02
KOG2106	626	consensus Uncharacterized conserved protein, conta	98.02
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.02
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.0
KOG2055	514	consensus WD40 repeat protein [General function pr	97.99
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	97.98
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	97.93
KOG2055	514	consensus WD40 repeat protein [General function pr	97.87
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.86
PRK01742	429	tolB translocation protein TolB; Provisional	97.84
PRK01742	429	tolB translocation protein TolB; Provisional	97.83
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.82
KOG1963	792	consensus WD40 repeat protein [General function pr	97.82
KOG2111	346	consensus Uncharacterized conserved protein, conta	97.81
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	97.81
KOG3881	412	consensus Uncharacterized conserved protein [Funct	97.81
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.8
KOG2139	445	consensus WD40 repeat protein [General function pr	97.79
PRK05137	435	tolB translocation protein TolB; Provisional	97.79
KOG4547	541	consensus WD40 repeat-containing protein [General	97.78
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.77
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	97.76
KOG1334	559	consensus WD40 repeat protein [General function pr	97.75
KOG4547	541	consensus WD40 repeat-containing protein [General	97.72
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.72
KOG1963	792	consensus WD40 repeat protein [General function pr	97.71
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.67
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	97.67
KOG0280	339	consensus Uncharacterized conserved protein [Amino	97.63
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.62
KOG2321	703	consensus WD40 repeat protein [General function pr	97.6
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.57
PRK04922	433	tolB translocation protein TolB; Provisional	97.55
KOG3881	412	consensus Uncharacterized conserved protein [Funct	97.55
COG5152	259	Uncharacterized conserved protein, contains RING a	97.54
KOG2139	445	consensus WD40 repeat protein [General function pr	97.53
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.51
PRK03629	429	tolB translocation protein TolB; Provisional	97.48
PRK02889	427	tolB translocation protein TolB; Provisional	97.47
PRK11028	330	6-phosphogluconolactonase; Provisional	97.44
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.44
PRK04922	433	tolB translocation protein TolB; Provisional	97.42
PRK11028	330	6-phosphogluconolactonase; Provisional	97.41
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.38
PRK03629	429	tolB translocation protein TolB; Provisional	97.35
KOG2695	425	consensus WD40 repeat protein [General function pr	97.34
PRK05137	435	tolB translocation protein TolB; Provisional	97.34
PRK02889	427	tolB translocation protein TolB; Provisional	97.34
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.32
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.25
KOG4227	609	consensus WD40 repeat protein [General function pr	97.22
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	97.21
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	97.2
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.19
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.18
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	97.17
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.17
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.17
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.16
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.14
PRK00178	430	tolB translocation protein TolB; Provisional	97.13
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.13
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	97.12
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	97.12
KOG2321	703	consensus WD40 repeat protein [General function pr	97.01
PRK04792	448	tolB translocation protein TolB; Provisional	96.99
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	96.96
PF05804	708	KAP: Kinesin-associated protein (KAP)	96.93
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	96.91
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	96.91
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	96.9
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.9
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	96.85
PRK01029	428	tolB translocation protein TolB; Provisional	96.81
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	96.75
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	96.72
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	96.69
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	96.68
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	96.67
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	96.6
PRK01029	428	tolB translocation protein TolB; Provisional	96.55
PRK00178	430	tolB translocation protein TolB; Provisional	96.52
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	96.43
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.39
KOG4532	344	consensus WD40-like repeat containing protein [Gen	96.34
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	96.33
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.29
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	96.25
COG4946	668	Uncharacterized protein related to the periplasmic	96.21
PRK04792	448	tolB translocation protein TolB; Provisional	96.18
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.16
KOG1334	559	consensus WD40 repeat protein [General function pr	96.11
PF05804	708	KAP: Kinesin-associated protein (KAP)	96.0
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	95.99
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	95.96
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	95.95
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	95.89
KOG2695	425	consensus WD40 repeat protein [General function pr	95.87
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	95.84
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.82
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	95.77
KOG2444	238	consensus WD40 repeat protein [General function pr	95.77
KOG3621	726	consensus WD40 repeat-containing protein [General	95.68
KOG2315	566	consensus Predicted translation initiation factor	95.6
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	95.59
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	95.5
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	95.49
PF04641	260	Rtf2: Rtf2 RING-finger	95.48
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.44
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	95.41
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	95.38
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	95.37
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	95.24
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	95.21
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	94.94
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	94.85
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	94.56
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	94.54
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	94.32
KOG1912	1062	consensus WD40 repeat protein [General function pr	94.26
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	94.21
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	94.13
KOG2315	566	consensus Predicted translation initiation factor	94.12
KOG0825	1134	consensus PHD Zn-finger protein [General function	94.06
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	94.02
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	93.8
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	93.78
PRK04043	419	tolB translocation protein TolB; Provisional	93.71
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	93.7
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	93.66
KOG1001	674	consensus Helicase-like transcription factor HLTF/	93.66
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	93.66
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	93.62
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	93.6
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	93.52
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	93.49
KOG2041	1189	consensus WD40 repeat protein [General function pr	93.43
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.43
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	93.24
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	92.94
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	92.93
KOG1912	1062	consensus WD40 repeat protein [General function pr	92.83
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	92.82
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	92.72
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	92.65
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	92.51
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	92.49
KOG3039	303	consensus Uncharacterized conserved protein [Funct	92.44
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	92.36
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	92.19
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	92.03
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	91.84
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	91.81
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	91.66
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	91.16
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	90.99
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	90.91
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	90.82
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	90.79
PRK04043	419	tolB translocation protein TolB; Provisional	90.72
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	90.71
COG5219	1525	Uncharacterized conserved protein, contains RING Z	90.52
COG4946	668	Uncharacterized protein related to the periplasmic	90.49
COG5175	480	MOT2 Transcriptional repressor [Transcription]	90.45
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	90.34
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	90.25
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	90.22
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	90.14
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	89.83
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	89.81
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	89.81
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	89.71
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	89.58
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	89.27
KOG3113	293	consensus Uncharacterized conserved protein [Funct	89.21
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	88.99
KOG3002	299	consensus Zn finger protein [General function pred	88.96
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	88.95
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	88.57
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	87.71
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	87.38
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	87.18
KOG4739	233	consensus Uncharacterized protein involved in syna	86.87
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	86.1
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	85.66
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	85.64
KOG1008	783	consensus Uncharacterized conserved protein, conta	85.49
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	84.96
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	84.62
KOG2314	698	consensus Translation initiation factor 3, subunit	84.18
KOG2395	644	consensus Protein involved in vacuole import and d	84.12
KOG2979	262	consensus Protein involved in DNA repair [General	83.81
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	83.54
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	83.53
KOG1008	783	consensus Uncharacterized conserved protein, conta	82.93
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	82.49
PRK02888	635	nitrous-oxide reductase; Validated	82.34
KOG2314	698	consensus Translation initiation factor 3, subunit	82.15
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	82.06
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	81.93
KOG0314	448	consensus Predicted E3 ubiquitin ligase [Posttrans	81.85
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	81.57
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	81.56
COG5109	396	Uncharacterized conserved protein, contains RING Z	80.86
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	80.69

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.79  E-value=2.5e-19  Score=206.28  Aligned_cols=137  Identities=18%  Similarity=0.216  Sum_probs=126.0

Q ss_pred             CCCCCceeeee--------cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--
Q 002641          757 GLRDINIHMKD--------IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--  824 (897)
Q Consensus       757 ~~~~~~~~i~~--------~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--  824 (897)
                      +..|.+.++|.        +++||...++.+.|+|.|.|+||+|.|++.++|...  ..++.+.||.+.|.|+.|+|+  
T Consensus       469 cSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~  548 (707)
T KOG0263|consen  469 CSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSN  548 (707)
T ss_pred             ccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCccc
Confidence            45677788884        467999999999999999999999999999999987  899999999999999999997  


Q ss_pred             EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641          825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV  895 (897)
Q Consensus       825 ~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~  895 (897)
                      ++++||.|.|||+||+.++  ..++.|.||+++|++++|||+|++|+||+.|+.|++||+.+| .+..|+.+
T Consensus       549 Y~aTGSsD~tVRlWDv~~G--~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H  618 (707)
T KOG0263|consen  549 YVATGSSDRTVRLWDVSTG--NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH  618 (707)
T ss_pred             ccccCCCCceEEEEEcCCC--cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc
Confidence            9999999999999999999  589999999999999999999999999999999999999998 66555543

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=2e-18  Score=184.03  Aligned_cols=127  Identities=21%  Similarity=0.280  Sum_probs=116.4

Q ss_pred             eecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCC
Q 002641          766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR  841 (897)
Q Consensus       766 ~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~  841 (897)
                      -....||...+-+..|+|+|..|+|||-|.++|+||+.  ..+.+.+||...|.||+|+||  .|+||+.||+|++||.+
T Consensus       108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk  187 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK  187 (480)
T ss_pred             ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence            35678999999999999999999999999999999987  899999999999999999998  99999999999999999


Q ss_pred             CCcceeEEEeeccCCCeEEEEEcc-----CCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641          842 GSILHLIQQIREHTKAVTGLAILQ-----SGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       842 ~~~~~~i~~l~gH~~~V~slafsp-----dg~~L~SgS~D~tIrlWdi~~~-~l~~l~  893 (897)
                      ++. +....|.||++.|++++|.|     ..++|+|+|.||+|+|||+..+ ++..+.
T Consensus       188 tg~-~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls  244 (480)
T KOG0271|consen  188 TGQ-QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS  244 (480)
T ss_pred             CCC-cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec
Confidence            986 66789999999999999976     4689999999999999999988 555543

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=3.9e-18  Score=181.88  Aligned_cols=137  Identities=19%  Similarity=0.280  Sum_probs=122.4

Q ss_pred             CCCCCCceeeee--------cccccccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeC-
Q 002641          756 QGLRDINIHMKD--------IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFR-  823 (897)
Q Consensus       756 ~~~~~~~~~i~~--------~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fsp-  823 (897)
                      .+..|.+.++||        ++++|...+-++.++|||++||||+.||+|++||..   +..+.+.||+..|++++|.| 
T Consensus       132 tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~  211 (480)
T KOG0271|consen  132 TGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPL  211 (480)
T ss_pred             ecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeeccc
Confidence            355778889996        578999999999999999999999999999999965   88999999999999999987 


Q ss_pred             ----C--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641          824 ----D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV  895 (897)
Q Consensus       824 ----d--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~  895 (897)
                          .  +|+|+|.||+|+|||+..+  .++..+.||+.+|+|+.|--+ .+|+|||.|+|||+|+...| ....|+.+
T Consensus       212 hl~p~~r~las~skDg~vrIWd~~~~--~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGH  287 (480)
T KOG0271|consen  212 HLVPPCRRLASSSKDGSVRIWDTKLG--TCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGH  287 (480)
T ss_pred             ccCCCccceecccCCCCEEEEEccCc--eEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhccc
Confidence                2  8999999999999999988  689999999999999999533 58999999999999999998 66666543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.73  E-value=5.8e-18  Score=182.87  Aligned_cols=136  Identities=19%  Similarity=0.172  Sum_probs=120.2

Q ss_pred             CCCCCceeeee--------cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--
Q 002641          757 GLRDINIHMKD--------IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--  824 (897)
Q Consensus       757 ~~~~~~~~i~~--------~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--  824 (897)
                      +..|.+..+|+        .++||...+.-+.|.|+|++|+|+|.|.+-++||+.  ..+....||...|++++|+||  
T Consensus       237 ~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS  316 (459)
T KOG0272|consen  237 ASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS  316 (459)
T ss_pred             eccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc
Confidence            34556666664        366788888888899999999999999999999997  555567899999999999998  


Q ss_pred             EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeec
Q 002641          825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ  894 (897)
Q Consensus       825 ~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~  894 (897)
                      +++|||.|..-||||++++  +++-.+.||.+.|.+|+|+|+|..|+|||.|+++||||++.. ++.+++.
T Consensus       317 L~~tGGlD~~~RvWDlRtg--r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA  385 (459)
T KOG0272|consen  317 LAATGGLDSLGRVWDLRTG--RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA  385 (459)
T ss_pred             eeeccCccchhheeecccC--cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc
Confidence            9999999999999999999  689999999999999999999999999999999999999987 6555543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.72  E-value=3.4e-17  Score=176.14  Aligned_cols=173  Identities=17%  Similarity=0.106  Sum_probs=144.1

Q ss_pred             hhHHHHHHhhhhhhcccCCCcchhhhhhh-----------ccc-------cccCCCCCCCCCc-eeeeecccccccceeE
Q 002641          718 GAARVSLLKRFISAFKSANDIDDRALSLL-----------ALN-------SFAQDPQGLRDIN-IHMKDIMKGLRELRKY  778 (897)
Q Consensus       718 ~~a~s~Lls~lv~~L~~~~~leervLA~l-----------sl~-------s~~~~~~~~~~~~-~~i~~~l~~~~~~~~~  778 (897)
                      ...+..++.++..-+.+...++++.|.++           |+|       ++..|+.+..... ...|+++..|...+++
T Consensus       150 ~n~R~~ll~elskyi~p~illP~rRLehLl~qAv~~Q~d~cvyhnsldsvsll~Dh~c~~~qip~qt~qil~~htdEVWf  229 (519)
T KOG0293|consen  150 NNERDKLLDELSKYIPPNILLPKRRLEHLLEQAVKYQRDSCVYHNSLDSVSLLSDHFCGRLQIPSQTWQILQDHTDEVWF  229 (519)
T ss_pred             chhHHHHHHHHHhhCCHhhcCChHHHHHHHHHHHHHHHhHhHHhcccchhhhhhhcccCcccCCchhhhhHhhCCCcEEE
Confidence            34677888888888888888888877655           222       3444555555544 6788999999999999


Q ss_pred             eeecccccEEEEecCCCCeEEEeCC-----cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEe
Q 002641          779 SPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI  851 (897)
Q Consensus       779 ~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l  851 (897)
                      +.|+++|+++||+|.|.+..+|++.     +..+++.||..+|..+.||||  ++++|+.|..+++||+.++.  +.+.+
T Consensus       230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd--~~~~y  307 (519)
T KOG0293|consen  230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD--LRHLY  307 (519)
T ss_pred             EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch--hhhhc
Confidence            9999999999999999999999974     678999999999999999997  99999999999999999985  33333


Q ss_pred             -eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCccceee
Q 002641          852 -REHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIF  892 (897)
Q Consensus       852 -~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l~~l  892 (897)
                       .+|...+++++|.|||..+++||.|++|..||+.+..+...
T Consensus       308 ~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W  349 (519)
T KOG0293|consen  308 PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNW  349 (519)
T ss_pred             ccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcc
Confidence             34568999999999999999999999999999887654433

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.72  E-value=5.2e-17  Score=167.84  Aligned_cols=135  Identities=18%  Similarity=0.191  Sum_probs=118.7

Q ss_pred             CCCCCceeeeec--------ccccccceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCC--CCcEEEEEEeCC-
Q 002641          757 GLRDINIHMKDI--------MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSE--NGKVLSIACFRD-  824 (897)
Q Consensus       757 ~~~~~~~~i~~~--------l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH--~~~V~sV~fspd-  824 (897)
                      +..|.+.++||.        +.||..-+-.+.+++|...|+|||.|++|++||+- .+..+...+  .+.|.||.|+|+ 
T Consensus        81 ~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~  160 (315)
T KOG0279|consen   81 ASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE  160 (315)
T ss_pred             ccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence            346777888875        44677888888899999999999999999999987 666666655  789999999995 


Q ss_pred             ---EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641          825 ---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       825 ---~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~  893 (897)
                         +|+++|.|++||+||+++.  +..+.|.||++.|+.+++||||...+||+.||.+.+||++.+ .+..|.
T Consensus       161 ~~p~Ivs~s~DktvKvWnl~~~--~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~  231 (315)
T KOG0279|consen  161 SNPIIVSASWDKTVKVWNLRNC--QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE  231 (315)
T ss_pred             CCcEEEEccCCceEEEEccCCc--chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc
Confidence               9999999999999999997  577899999999999999999999999999999999999998 665554

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.71  E-value=6.7e-17  Score=166.98  Aligned_cols=127  Identities=25%  Similarity=0.282  Sum_probs=111.5

Q ss_pred             eeeecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEe
Q 002641          764 HMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT  839 (897)
Q Consensus       764 ~i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd  839 (897)
                      .....++||..++.-+..++||++.+|+|+|+++++||+.  +..+.|.||...|.+|+|++|  +++|||.|.||++||
T Consensus        54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwn  133 (315)
T KOG0279|consen   54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN  133 (315)
T ss_pred             ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeee
Confidence            3345678888999889999999999999999999999987  888899999999999999997  999999999999999


Q ss_pred             CCCCcceeEEEeecc--CCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641          840 GRGSILHLIQQIREH--TKAVTGLAILQS--GEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       840 ~~~~~~~~i~~l~gH--~~~V~slafspd--g~~L~SgS~D~tIrlWdi~~~-~l~~l~  893 (897)
                      +.++   +..+...+  ++.|+|+.|+|+  .-+|+++|.|+++|+||+++. ..+.|.
T Consensus       134 t~g~---ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~  189 (315)
T KOG0279|consen  134 TLGV---CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI  189 (315)
T ss_pred             eccc---EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc
Confidence            9987   45555444  889999999998  679999999999999999987 444443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.70  E-value=5.1e-17  Score=187.39  Aligned_cols=129  Identities=22%  Similarity=0.339  Sum_probs=118.6

Q ss_pred             CCCCCceeee--------ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--
Q 002641          757 GLRDINIHMK--------DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--  824 (897)
Q Consensus       757 ~~~~~~~~i~--------~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--  824 (897)
                      +..|.+-.+|        .+.-||..-+.++.|.|+..|+++||.|++|++||+.  ..++.|.||+++|.+|+|||+  
T Consensus       511 as~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr  590 (707)
T KOG0263|consen  511 ASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR  590 (707)
T ss_pred             cCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc
Confidence            3566676777        3567888889999999999999999999999999986  889999999999999999997  


Q ss_pred             EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       825 ~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      +|+||+.||.|++||+.++  ..+..+.+|++.|.++.|+.+|..|++||.|.+|++||+...
T Consensus       591 ~LaSg~ed~~I~iWDl~~~--~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  591 YLASGDEDGLIKIWDLANG--SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             eEeecccCCcEEEEEcCCC--cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            9999999999999999998  578899999999999999999999999999999999998764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.68  E-value=1.5e-16  Score=181.69  Aligned_cols=127  Identities=17%  Similarity=0.219  Sum_probs=118.2

Q ss_pred             ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc
Q 002641          769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI  844 (897)
Q Consensus       769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~  844 (897)
                      ...|..-++++.++++.+.|||||.|++.+||++.  +...++.||+..|+||.|+|.  .++|+|.|+|||+|.+.+. 
T Consensus       459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-  537 (775)
T KOG0319|consen  459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-  537 (775)
T ss_pred             HHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-
Confidence            34567888999999999999999999999999998  899999999999999999996  9999999999999999998 


Q ss_pred             ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecccC
Q 002641          845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQVVD  897 (897)
Q Consensus       845 ~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~~d  897 (897)
                       .|+.+|.||+.+|..+.|-.+|+.|+|++.||-|++||++++ |.+++-.+-|
T Consensus       538 -SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D  590 (775)
T KOG0319|consen  538 -SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND  590 (775)
T ss_pred             -eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc
Confidence             699999999999999999999999999999999999999999 8888766543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.68  E-value=1.1e-16  Score=173.06  Aligned_cols=124  Identities=21%  Similarity=0.275  Sum_probs=115.8

Q ss_pred             ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc
Q 002641          769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI  844 (897)
Q Consensus       769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~  844 (897)
                      .+||...+..+.+.+||..++|||.|..-+|||++  .++-.+.||..+|.+|+|+|+  .++|||.|+++||||++.. 
T Consensus       299 QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-  377 (459)
T KOG0272|consen  299 QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-  377 (459)
T ss_pred             hcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc-
Confidence            57899999999999999999999999999999998  888899999999999999998  9999999999999999988 


Q ss_pred             ceeEEEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCc-cceeeec
Q 002641          845 LHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVRSNDSF-TYAIFIQ  894 (897)
Q Consensus       845 ~~~i~~l~gH~~~V~slafsp-dg~~L~SgS~D~tIrlWdi~~~-~l~~l~~  894 (897)
                       ..+.++.+|++-|+.|.|+| .|.+|+|+|.|++++||..++. ++++|..
T Consensus       378 -~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG  428 (459)
T KOG0272|consen  378 -SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG  428 (459)
T ss_pred             -ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC
Confidence             46899999999999999999 6899999999999999999988 7666654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.66  E-value=7e-16  Score=164.28  Aligned_cols=135  Identities=21%  Similarity=0.225  Sum_probs=121.3

Q ss_pred             CCCCCCceeeee--------cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC--
Q 002641          756 QGLRDINIHMKD--------IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR--  823 (897)
Q Consensus       756 ~~~~~~~~~i~~--------~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp--  823 (897)
                      .+..|.++.+|+        ...+|...+..+....||..+||+|.|.++++|-+.  ++...+.+|..+|-|++|-|  
T Consensus       210 S~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~  289 (406)
T KOG0295|consen  210 SCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPES  289 (406)
T ss_pred             ecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccc
Confidence            456777778885        456788889999999999999999999999999987  67889999999999999975  


Q ss_pred             ----------C-----EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-
Q 002641          824 ----------D-----KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-  887 (897)
Q Consensus       824 ----------d-----~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-  887 (897)
                                +     .+++||.|++||+||+.++  .++.++.||..+|..++|+|.|++|+|+..|+++++||++++ 
T Consensus       290 ~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg--~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~  367 (406)
T KOG0295|consen  290 SYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG--MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ  367 (406)
T ss_pred             cCcchhhccCCCCCccEEEeecccceEEEEeccCC--eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence                      1     7899999999999999999  699999999999999999999999999999999999999998 


Q ss_pred             cceee
Q 002641          888 TYAIF  892 (897)
Q Consensus       888 ~l~~l  892 (897)
                      +..++
T Consensus       368 cmk~~  372 (406)
T KOG0295|consen  368 CMKTL  372 (406)
T ss_pred             eeecc
Confidence            65544

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.66  E-value=6.4e-16  Score=180.23  Aligned_cols=118  Identities=24%  Similarity=0.398  Sum_probs=112.3

Q ss_pred             ccccccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCC
Q 002641          769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS  843 (897)
Q Consensus       769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~  843 (897)
                      +.+|...+.-+.+++++.++++|+.|+++++||+.   ..++++.||...|++++|+|+  +++||+.|++||+||++++
T Consensus       199 l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~  278 (456)
T KOG0266|consen  199 LSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG  278 (456)
T ss_pred             ccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence            36788999999999999999999999999999994   688999999999999999996  9999999999999999997


Q ss_pred             cceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCcc
Q 002641          844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFT  888 (897)
Q Consensus       844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~  888 (897)
                        .++..+.+|.+.|++++|+++|++|+++|.|++|++||+.++.
T Consensus       279 --~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~  321 (456)
T KOG0266|consen  279 --ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGS  321 (456)
T ss_pred             --eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence              6899999999999999999999999999999999999999995

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.65  E-value=6.9e-16  Score=163.63  Aligned_cols=138  Identities=20%  Similarity=0.291  Sum_probs=123.0

Q ss_pred             CCCCCCceeeeec--------ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC-
Q 002641          756 QGLRDINIHMKDI--------MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD-  824 (897)
Q Consensus       756 ~~~~~~~~~i~~~--------l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd-  824 (897)
                      .+..|.+..+||+        +.||...+.-+.+++.--|++|++.|+.|+-||+.  +.++.+.||-+.|+|++.+|. 
T Consensus       168 tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl  247 (460)
T KOG0285|consen  168 TGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL  247 (460)
T ss_pred             ecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccc
Confidence            4567778888874        56677788888888888899999999999999997  899999999999999999994 


Q ss_pred             -EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641          825 -KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV  895 (897)
Q Consensus       825 -~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~  895 (897)
                       .|+|||.|.++||||+++.  ..+..+.||+..|.+|.+.|..-.++|||.|+|||+||++.| ...++..+
T Consensus       248 dvl~t~grDst~RvWDiRtr--~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h  318 (460)
T KOG0285|consen  248 DVLVTGGRDSTIRVWDIRTR--ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH  318 (460)
T ss_pred             eeEEecCCcceEEEeeeccc--ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecc
Confidence             9999999999999999998  579999999999999999988888999999999999999998 66665543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.65  E-value=9.7e-16  Score=159.26  Aligned_cols=115  Identities=20%  Similarity=0.238  Sum_probs=97.5

Q ss_pred             eeecccccEEEEecCCCCeEEEeCC--------cceeeccCCCCcEEEEEEeCC-EEEEEecCCeEEEEeCCCCcceeEE
Q 002641          779 SPLAFEMVKVLSNGHDSSADFWNHR--------ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQ  849 (897)
Q Consensus       779 ~~~s~d~~~LaSgs~DgtIklWd~~--------~~l~~l~gH~~~V~sV~fspd-~L~Sgs~DgtIrlWd~~~~~~~~i~  849 (897)
                      ++++|.|+++|.|+.|....||++.        .+.+.+.||++.+.|..|-+| +|+|||.|.|+-+||+.++  +.+.
T Consensus       103 CA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g--~~~~  180 (343)
T KOG0286|consen  103 CAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG--QQTQ  180 (343)
T ss_pred             EEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccc--eEEE
Confidence            4455555556666666555555543        255668899999999999998 9999999999999999999  6899


Q ss_pred             EeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641          850 QIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVRSNDSF-TYAIFIQV  895 (897)
Q Consensus       850 ~l~gH~~~V~slafsp-dg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~  895 (897)
                      .|.||++.|.+++++| +++.++||+.|++.++||++.+ +.++|..+
T Consensus       181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh  228 (343)
T KOG0286|consen  181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH  228 (343)
T ss_pred             EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc
Confidence            9999999999999999 8999999999999999999999 99998754

>PTZ00421 coronin; Provisional

Probab=99.65  E-value=1.7e-15  Score=176.96  Aligned_cols=122  Identities=16%  Similarity=0.170  Sum_probs=109.6

Q ss_pred             ccccccceeEeeecc-cccEEEEecCCCCeEEEeCC---------cceeeccCCCCcEEEEEEeCC---EEEEEecCCeE
Q 002641          769 MKGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR---------ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTI  835 (897)
Q Consensus       769 l~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~---------~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtI  835 (897)
                      +.+|...+..+.+++ ++.+|+|||.|++|++||+.         ..+..+.+|...|.+++|+|+   +|+||+.|++|
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV  150 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV  150 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence            568888888888888 88999999999999999985         246788999999999999984   89999999999


Q ss_pred             EEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641          836 KVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       836 rlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l  892 (897)
                      ++||+.++  ..+..+.+|.+.|.+++|+|+|+.|++|+.|++|++||++++ .+..+
T Consensus       151 rIWDl~tg--~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl  206 (493)
T PTZ00421        151 NVWDVERG--KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV  206 (493)
T ss_pred             EEEECCCC--eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence            99999987  578889999999999999999999999999999999999988 44444

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.65  E-value=1.1e-15  Score=158.96  Aligned_cols=129  Identities=20%  Similarity=0.353  Sum_probs=118.3

Q ss_pred             ceeeeecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC-C--EEEEEecCCeEE
Q 002641          762 NIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIK  836 (897)
Q Consensus       762 ~~~i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp-d--~L~Sgs~DgtIr  836 (897)
                      .......+.+|.....++.|-+ ...|++||-|.++-+||++  +.+..|.||.+.|.++.++| +  .++||+.|++.+
T Consensus       134 ~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak  212 (343)
T KOG0286|consen  134 NVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK  212 (343)
T ss_pred             cceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence            3566677899999999998887 5578899999999999998  88999999999999999999 4  999999999999


Q ss_pred             EEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641          837 VWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       837 lWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~  893 (897)
                      +||++.+  .++++|.||...|++|.|.|+|.-|++||.|+++|+||++.. ++..|.
T Consensus       213 lWD~R~~--~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys  268 (343)
T KOG0286|consen  213 LWDVRSG--QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS  268 (343)
T ss_pred             eeeccCc--ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec
Confidence            9999998  699999999999999999999999999999999999999997 776665

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.64  E-value=1.1e-15  Score=174.57  Aligned_cols=124  Identities=21%  Similarity=0.281  Sum_probs=110.3

Q ss_pred             ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc
Q 002641          769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI  844 (897)
Q Consensus       769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~  844 (897)
                      ..||-.......++|||.++|+|+.||+|||||..  -+..+|..|++.|+.+.|+.+  .++|.|.|||||.||++...
T Consensus       346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr  425 (893)
T KOG0291|consen  346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR  425 (893)
T ss_pred             ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence            45778889999999999999999999999999998  599999999999999999975  99999999999999987543


Q ss_pred             ------------------------------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 002641          845 ------------------------------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVR  882 (897)
Q Consensus       845 ------------------------------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlW  882 (897)
                                                                .+.+..+.||.++|.+++|+|+|..|+|||+|+|||+|
T Consensus       426 NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW  505 (893)
T KOG0291|consen  426 NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW  505 (893)
T ss_pred             eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence                                                      45566778999999999999999999999999999999


Q ss_pred             eCCCc--cceee
Q 002641          883 SNDSF--TYAIF  892 (897)
Q Consensus       883 di~~~--~l~~l  892 (897)
                      |+-..  +..++
T Consensus       506 ~if~s~~~vEtl  517 (893)
T KOG0291|consen  506 DIFSSSGTVETL  517 (893)
T ss_pred             EeeccCceeeeE
Confidence            99543  44444

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.63  E-value=1.3e-15  Score=166.53  Aligned_cols=123  Identities=20%  Similarity=0.229  Sum_probs=114.0

Q ss_pred             cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC-----------EEEEEecCCe
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD-----------KIFSGHSDGT  834 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd-----------~L~Sgs~Dgt  834 (897)
                      ...||...+....+.+.|..|+|+|+|+|++||+.+  ...+.+.+|...|+.+.|+|+           .+++++.|++
T Consensus       354 t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst  433 (524)
T KOG0273|consen  354 TFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST  433 (524)
T ss_pred             eeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe
Confidence            456789999999999999999999999999999987  788999999999999999982           8999999999


Q ss_pred             EEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641          835 IKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       835 IrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l  892 (897)
                      |++||+..+  .++++|..|+.+|++|+|+|+|++++||+.||.|.+|+++++ ..+.+
T Consensus       434 V~lwdv~~g--v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~  490 (524)
T KOG0273|consen  434 VKLWDVESG--VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY  490 (524)
T ss_pred             EEEEEccCC--ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee
Confidence            999999998  689999999999999999999999999999999999999998 44443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.63  E-value=6.4e-16  Score=163.91  Aligned_cols=129  Identities=16%  Similarity=0.220  Sum_probs=120.2

Q ss_pred             eeeecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEe
Q 002641          764 HMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT  839 (897)
Q Consensus       764 ~i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd  839 (897)
                      .+..++.||.+.+.++.+.|...+++|||.|++|+|||+.  ++.-++.||-..|..|++|+.  ++||++.|+.||.||
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence            3447889999999999999999999999999999999987  888899999999999999986  999999999999999


Q ss_pred             CCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeec
Q 002641          840 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ  894 (897)
Q Consensus       840 ~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~  894 (897)
                      +...  +.++.+.||-..|.|++.+|.-+.|++||.|.++|+||+++. .+.+|..
T Consensus       222 Le~n--kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G  275 (460)
T KOG0285|consen  222 LEYN--KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG  275 (460)
T ss_pred             chhh--hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC
Confidence            9988  588999999999999999999999999999999999999998 7776654

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.62  E-value=3.9e-16  Score=135.09  Aligned_cols=72  Identities=44%  Similarity=0.831  Sum_probs=62.0

Q ss_pred             CCCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHHHHhCC
Q 002641          160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP  232 (897)
Q Consensus       160 l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~~~~~~  232 (897)
                      +|++|.||||+++|.|||+++|||+|||.||.+|+..+...||.|++++....+ .||..|++.|+.|+.++.
T Consensus         1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l-~pn~~Lk~~I~~~~~~~~   72 (73)
T PF04564_consen    1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDL-IPNRALKSAIEEWCAENK   72 (73)
T ss_dssp             SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGS-EE-HHHHHHHHHHHHHCT
T ss_pred             CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccc-eECHHHHHHHHHHHHHcc
Confidence            578999999999999999999999999999999999877899999999999999 599999999999998874

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=8.7e-16  Score=172.25  Aligned_cols=128  Identities=20%  Similarity=0.282  Sum_probs=115.5

Q ss_pred             CCCCceeee---------ecccccccceeEeeecc-cccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC--
Q 002641          758 LRDINIHMK---------DIMKGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR--  823 (897)
Q Consensus       758 ~~~~~~~i~---------~~l~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp--  823 (897)
                      ..|.++.+|         ++.+||...+-.+.+.| |.+.+||+|.|+|||||.+.  .+..+++||...|.||.|.+  
T Consensus       116 SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~g  195 (794)
T KOG0276|consen  116 SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGG  195 (794)
T ss_pred             CCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCC
Confidence            345556666         47889888887777776 78899999999999999998  78899999999999999986  


Q ss_pred             C--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          824 D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       824 d--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      |  +|+||+.|.+|||||.++.  .|++++.||+..|+.+.|+|.=..++|||.|||+|||+..|-
T Consensus       196 dkpylIsgaDD~tiKvWDyQtk--~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty  259 (794)
T KOG0276|consen  196 DKPYLISGADDLTIKVWDYQTK--SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY  259 (794)
T ss_pred             CcceEEecCCCceEEEeecchH--HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce
Confidence            3  9999999999999999997  699999999999999999999999999999999999998876

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.61  E-value=2.6e-15  Score=151.87  Aligned_cols=128  Identities=21%  Similarity=0.286  Sum_probs=117.3

Q ss_pred             ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCC
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~  842 (897)
                      .++..++..+....++.+|+|.++++.|++|++|+..  .+++++.||...|..++.+.|  .|++|+.|..|.+||+.+
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence            4566778899999999999999999999999999976  899999999999999998876  999999999999999999


Q ss_pred             CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc---cceeeeccc
Q 002641          843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF---TYAIFIQVV  896 (897)
Q Consensus       843 ~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~---~l~~l~~~~  896 (897)
                      +  +.++.|+||.+.|+.++|+.+...++|||.|.++|+||.++.   .+|.|-+..
T Consensus        91 G--kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~  145 (307)
T KOG0316|consen   91 G--KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK  145 (307)
T ss_pred             C--eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence            9  689999999999999999999999999999999999999986   666665543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=7.2e-15  Score=151.54  Aligned_cols=122  Identities=22%  Similarity=0.189  Sum_probs=113.8

Q ss_pred             eecccccccceeEeeecccccEEEEecCCCCeEEEeCC-----cceeeccCCCCcEEEEEEeC--CEEEEEecCCeEEEE
Q 002641          766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVW  838 (897)
Q Consensus       766 ~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fsp--d~L~Sgs~DgtIrlW  838 (897)
                      -.+++||...+.++.++.+|.+||++|.|++|.||.+.     .+..++++|+..|--|.|+|  ++|+|+|.|+|||+|
T Consensus        98 v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~  177 (312)
T KOG0645|consen   98 VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVY  177 (312)
T ss_pred             EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEE
Confidence            46789999999999999999999999999999999986     79999999999999999999  599999999999999


Q ss_pred             eCC-CCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          839 TGR-GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       839 d~~-~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      +-. .+...+++++.||++.|++++|++.|..++|++.|++++||-..+.
T Consensus       178 ~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~  227 (312)
T KOG0645|consen  178 RDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD  227 (312)
T ss_pred             eecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC
Confidence            988 5556889999999999999999999999999999999999985543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.60  E-value=1.4e-15  Score=163.85  Aligned_cols=123  Identities=20%  Similarity=0.287  Sum_probs=112.4

Q ss_pred             cccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcc
Q 002641          770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL  845 (897)
Q Consensus       770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~  845 (897)
                      ..|...++...+++....++|+|.||+|+|||+.  +...++.||.-.|.|++|+|.  +++|||.|..||+||.+++  
T Consensus       177 ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg--  254 (464)
T KOG0284|consen  177 AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG--  254 (464)
T ss_pred             HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc--
Confidence            3444888999999999999999999999999987  666778999999999999996  9999999999999999999  


Q ss_pred             eeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeec
Q 002641          846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ  894 (897)
Q Consensus       846 ~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~  894 (897)
                      .++.++.+|+..|..+.|+|+|++|+++|.|..++++|+++- .+.+++.
T Consensus       255 ~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~  304 (464)
T KOG0284|consen  255 SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG  304 (464)
T ss_pred             chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc
Confidence            699999999999999999999999999999999999999964 6666653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.60  E-value=6.1e-16  Score=161.71  Aligned_cols=127  Identities=17%  Similarity=0.241  Sum_probs=116.1

Q ss_pred             eecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeecc-CCCCcEEEEEEeCC--EEEEEecCCeEEEEeC
Q 002641          766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDS-SENGKVLSIACFRD--KIFSGHSDGTIKVWTG  840 (897)
Q Consensus       766 ~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~-gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~  840 (897)
                      .+..--+...+.+..|+.|...+|||+.||.|++|.+.  ++++.|. .|+..|+|+.|+.|  .++|+|.|.++|+.-+
T Consensus       256 qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl  335 (508)
T KOG0275|consen  256 QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL  335 (508)
T ss_pred             hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecc
Confidence            34444456788899999999999999999999999986  8888887 89999999999997  9999999999999999


Q ss_pred             CCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeec
Q 002641          841 RGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ  894 (897)
Q Consensus       841 ~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~  894 (897)
                      +.+  +++..|+||+..|+...|.+||++++|+|.||+|++|+.+++ |+++|+-
T Consensus       336 KSG--K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~  388 (508)
T KOG0275|consen  336 KSG--KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP  388 (508)
T ss_pred             ccc--hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC
Confidence            999  689999999999999999999999999999999999999998 8888863

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.57  E-value=2.3e-14  Score=167.23  Aligned_cols=136  Identities=21%  Similarity=0.297  Sum_probs=119.4

Q ss_pred             CCCCceeeee---------cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--
Q 002641          758 LRDINIHMKD---------IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--  824 (897)
Q Consensus       758 ~~~~~~~i~~---------~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--  824 (897)
                      ..|.+.++|+         ++.+|...+..+.|+++|+.++||+.|++|+|||++  ++..++.+|.+.|.+++|+++  
T Consensus       222 s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~  301 (456)
T KOG0266|consen  222 SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN  301 (456)
T ss_pred             cCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCC
Confidence            4556666665         456888999999999999999999999999999998  899999999999999999997  


Q ss_pred             EEEEEecCCeEEEEeCCCCcceeEEEeeccCCC--eEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641          825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA--VTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       825 ~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~--V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~  893 (897)
                      .|++++.||+|++||+.++...+...+.++...  |+++.|+|+|.++++++.|+++++||+..+ ....+.
T Consensus       302 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~  373 (456)
T KOG0266|consen  302 LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT  373 (456)
T ss_pred             EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec
Confidence            999999999999999999842256778888776  999999999999999999999999999987 555544

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.57  E-value=2.5e-15  Score=161.98  Aligned_cols=127  Identities=17%  Similarity=0.230  Sum_probs=115.2

Q ss_pred             ecccccccceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCC-CcEEEEEEeCC--EEEEEecCCeEEEEeCCC
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSEN-GKVLSIACFRD--KIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~-~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~  842 (897)
                      -++..|...+....++.++.+++||+.||.||+|+.. +.++.+++|. ..|.+++|+|+  .|+|||.||+|+|||...
T Consensus       132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~  211 (464)
T KOG0284|consen  132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM  211 (464)
T ss_pred             HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence            4677888999999999999999999999999999998 7777788875 89999999995  999999999999999997


Q ss_pred             CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641          843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV  895 (897)
Q Consensus       843 ~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~  895 (897)
                      .  +....+.||.-.|.|++|+|....++|||.|..|++||.++| ++.++..+
T Consensus       212 ~--kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~H  263 (464)
T KOG0284|consen  212 P--KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGH  263 (464)
T ss_pred             C--chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhc
Confidence            7  356678999999999999999999999999999999999999 88776544

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.57  E-value=2e-15  Score=159.35  Aligned_cols=115  Identities=17%  Similarity=0.284  Sum_probs=106.9

Q ss_pred             ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCc
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI  844 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~  844 (897)
                      .++.||...++++.++  .++|+|+|.|.+|++|++.  ..++++.||+..|.|+.|...+++|||+|.|||+||+..| 
T Consensus       314 rVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G-  390 (499)
T KOG0281|consen  314 RVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG-  390 (499)
T ss_pred             HHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEecccc-
Confidence            3678899988888776  5699999999999999988  8999999999999999999999999999999999999998 


Q ss_pred             ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       845 ~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                       .+++.+.||..-|.|+.|.  .+.++||+.||+|++||+.++
T Consensus       391 -~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  391 -ACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             -HHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccc
Confidence             6999999999999999996  678999999999999999876

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.57  E-value=1.7e-14  Score=147.19  Aligned_cols=121  Identities=17%  Similarity=0.301  Sum_probs=107.4

Q ss_pred             ecccccccceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCC
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS  843 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~  843 (897)
                      ...++|...+..++|..+|++++|||.||++||||++ ......-.|.++|.+|..+|+  .|++|..+|.|++||+...
T Consensus        77 ~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~  156 (311)
T KOG0315|consen   77 ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN  156 (311)
T ss_pred             eEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence            3567888899999999999999999999999999998 333334467799999999997  8999999999999999876


Q ss_pred             c-----------------------------------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCC
Q 002641          844 I-----------------------------------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLD  876 (897)
Q Consensus       844 ~-----------------------------------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D  876 (897)
                      .                                               +.++..|+.|++.+..+-+|||+++|+++|.|
T Consensus       157 ~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd  236 (311)
T KOG0315|consen  157 SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD  236 (311)
T ss_pred             ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence            3                                               56677889999999999999999999999999


Q ss_pred             CcEEEEeCCCc
Q 002641          877 KTARVRSNDSF  887 (897)
Q Consensus       877 ~tIrlWdi~~~  887 (897)
                      ++++||+..+-
T Consensus       237 ktv~iwn~~~~  247 (311)
T KOG0315|consen  237 KTVKIWNTDDF  247 (311)
T ss_pred             ceEEEEecCCc
Confidence            99999998875

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.57  E-value=6.8e-15  Score=171.30  Aligned_cols=119  Identities=18%  Similarity=0.249  Sum_probs=106.0

Q ss_pred             ecccccccceeEeeecccccEEEEecCCCCeEEEeCCc------------------------------------------
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE------------------------------------------  804 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~------------------------------------------  804 (897)
                      .+...|.+.++.+.|++||+||||||.|+.|+||.+..                                          
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            34448899999999999999999999999999997421                                          


Q ss_pred             --------------------ceeeccCCCCcEEEEEEeCC-EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEE
Q 002641          805 --------------------LVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI  863 (897)
Q Consensus       805 --------------------~l~~l~gH~~~V~sV~fspd-~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slaf  863 (897)
                                          ++..|.||.+.|..+.||.+ +|+|.|.|.|||||++...  .|+..|. |...|+||+|
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~--~CL~~F~-HndfVTcVaF  417 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK--ECLKVFS-HNDFVTCVAF  417 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc--ceeeEEe-cCCeeEEEEe
Confidence                                44556689999999999997 9999999999999999976  6889887 9999999999


Q ss_pred             cc-CCCEEEEEeCCCcEEEEeCCCcc
Q 002641          864 LQ-SGEMLYSGSLDKTARVRSNDSFT  888 (897)
Q Consensus       864 sp-dg~~L~SgS~D~tIrlWdi~~~~  888 (897)
                      +| |.++|+|||.|+.||||++....
T Consensus       418 nPvDDryFiSGSLD~KvRiWsI~d~~  443 (712)
T KOG0283|consen  418 NPVDDRYFISGSLDGKVRLWSISDKK  443 (712)
T ss_pred             cccCCCcEeecccccceEEeecCcCe
Confidence            99 56999999999999999997653

>PTZ00420 coronin; Provisional

Probab=99.57  E-value=5.3e-14  Score=165.76  Aligned_cols=123  Identities=15%  Similarity=0.095  Sum_probs=104.8

Q ss_pred             cccccccceeEeeeccc-ccEEEEecCCCCeEEEeCCc----------ceeeccCCCCcEEEEEEeCC---EEEEEecCC
Q 002641          768 IMKGLRELRKYSPLAFE-MVKVLSNGHDSSADFWNHRE----------LVHVDSSENGKVLSIACFRD---KIFSGHSDG  833 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d-~~~LaSgs~DgtIklWd~~~----------~l~~l~gH~~~V~sV~fspd---~L~Sgs~Dg  833 (897)
                      .+.+|...+..+.++++ +.+|+|||.|++|+|||+..          .+..+.+|.+.|.+++|+|+   +++|||.||
T Consensus        69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg  148 (568)
T PTZ00420         69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS  148 (568)
T ss_pred             EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence            46788888888888885 88999999999999999851          23467899999999999995   578999999


Q ss_pred             eEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641          834 TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       834 tIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~  893 (897)
                      +|++||++++.  .+..+. |...|++++|+|+|.+|++++.|++|++||++++ .+.++.
T Consensus       149 tIrIWDl~tg~--~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~  206 (568)
T PTZ00420        149 FVNIWDIENEK--RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH  206 (568)
T ss_pred             eEEEEECCCCc--EEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            99999999884  455554 6678999999999999999999999999999998 555554

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.56  E-value=2.7e-14  Score=153.01  Aligned_cols=126  Identities=19%  Similarity=0.168  Sum_probs=108.2

Q ss_pred             cccccccceeEeeecccccEEEEecCCCCeEEEeCC---------------------------cceeeccCCCCcEEEEE
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---------------------------ELVHVDSSENGKVLSIA  820 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---------------------------~~l~~l~gH~~~V~sV~  820 (897)
                      ...||...+..+....+|.+++|||+|.++++|+..                           ..+-++.||+.+|.+|.
T Consensus       188 ~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~  267 (423)
T KOG0313|consen  188 VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVV  267 (423)
T ss_pred             HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEE
Confidence            355999999999999999999999999999999921                           16677889999999999


Q ss_pred             EeCC-EEEEEecCCeEEEEeCCCCc------------------------------------------ceeEEEeeccCCC
Q 002641          821 CFRD-KIFSGHSDGTIKVWTGRGSI------------------------------------------LHLIQQIREHTKA  857 (897)
Q Consensus       821 fspd-~L~Sgs~DgtIrlWd~~~~~------------------------------------------~~~i~~l~gH~~~  857 (897)
                      |++. .++|+|.|+|||+||+.++.                                          ....++|.||++.
T Consensus       268 w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw  347 (423)
T KOG0313|consen  268 WSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW  347 (423)
T ss_pred             EcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhh
Confidence            9975 99999999999999998765                                          2234678899999


Q ss_pred             eEEEEEccCC-CEEEEEeCCCcEEEEeCCCc--cceeee
Q 002641          858 VTGLAILQSG-EMLYSGSLDKTARVRSNDSF--TYAIFI  893 (897)
Q Consensus       858 V~slafspdg-~~L~SgS~D~tIrlWdi~~~--~l~~l~  893 (897)
                      |.++.|+|.. ..|+|||.|+++++||+|+.  .+-.+.
T Consensus       348 Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~  386 (423)
T KOG0313|consen  348 VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA  386 (423)
T ss_pred             hhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence            9999999975 78999999999999999985  444443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.56  E-value=1.7e-14  Score=150.58  Aligned_cols=123  Identities=24%  Similarity=0.318  Sum_probs=110.0

Q ss_pred             cccccccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCC
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~  842 (897)
                      .+.||...+....|.|+|..+||||.|..|-+|++.   +-..+++||.++|+.+.|++|  .++|+|.|.+|+.||+++
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t  121 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET  121 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence            467889999999999999999999999999999964   667778899999999999997  999999999999999999


Q ss_pred             CcceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc-cceee
Q 002641          843 SILHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       843 ~~~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~-~l~~l  892 (897)
                      +  +.+..+++|++-|+++.-+.-| ..+.||+.|+|+|+||+++. .+++|
T Consensus       122 G--~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~  171 (338)
T KOG0265|consen  122 G--KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF  171 (338)
T ss_pred             c--eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc
Confidence            9  6899999999999999854445 67889999999999999976 55555

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.56  E-value=3.5e-15  Score=157.57  Aligned_cols=135  Identities=21%  Similarity=0.310  Sum_probs=111.5

Q ss_pred             CCCCCCceeeeecccccccceeEee-------ecccccEEEEecCCCCeEEEeCC-----cceeeccCCCCcEEEEEEeC
Q 002641          756 QGLRDINIHMKDIMKGLRELRKYSP-------LAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFR  823 (897)
Q Consensus       756 ~~~~~~~~~i~~~l~~~~~~~~~~~-------~s~d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fsp  823 (897)
                      .+..|.++.+||+.+| ...+.+..       .-....+++|+|.|.+|.+||+.     .+.+++.||...|..|.|+.
T Consensus       252 sGSSDsTvrvWDv~tg-e~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~  330 (499)
T KOG0281|consen  252 SGSSDSTVRVWDVNTG-EPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD  330 (499)
T ss_pred             ecCCCceEEEEeccCC-chhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc
Confidence            3567778888887666 32322222       22346688999999999999976     57788889999999999998


Q ss_pred             CEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641          824 DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV  895 (897)
Q Consensus       824 d~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~  895 (897)
                      .+++|+|.|.|||+|++.+.  .+++++.||.-.|.|+.+.  |+.++|||.|.|||+||+..| ++..|..+
T Consensus       331 kyIVsASgDRTikvW~~st~--efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGH  399 (499)
T KOG0281|consen  331 KYIVSASGDRTIKVWSTSTC--EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGH  399 (499)
T ss_pred             ceEEEecCCceEEEEeccce--eeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhch
Confidence            89999999999999999998  6899999999999999885  899999999999999999999 88777654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=2.6e-14  Score=160.58  Aligned_cols=125  Identities=18%  Similarity=0.228  Sum_probs=112.2

Q ss_pred             ccccccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCC
Q 002641          769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~  842 (897)
                      .+.|.+..+.+..-|..-+++|+|+|-+||+||..   .+.++|.||...|++|+|+|.   .++|||.|+|||||.+..
T Consensus        93 FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs  172 (794)
T KOG0276|consen   93 FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS  172 (794)
T ss_pred             eeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC
Confidence            44566777777777777799999999999999997   789999999999999999993   999999999999999988


Q ss_pred             CcceeEEEeeccCCCeEEEEEccCC--CEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641          843 SILHLIQQIREHTKAVTGLAILQSG--EMLYSGSLDKTARVRSNDSF-TYAIFIQV  895 (897)
Q Consensus       843 ~~~~~i~~l~gH~~~V~slafspdg--~~L~SgS~D~tIrlWdi~~~-~l~~l~~~  895 (897)
                      .  .+..++.||.+.|+|+.|-+.|  -+|+||+.|.+|+|||..+. |+++|..+
T Consensus       173 ~--~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH  226 (794)
T KOG0276|consen  173 P--HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH  226 (794)
T ss_pred             C--CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc
Confidence            7  5789999999999999998866  59999999999999999998 98888754

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.53  E-value=3.3e-14  Score=162.81  Aligned_cols=129  Identities=16%  Similarity=0.223  Sum_probs=118.6

Q ss_pred             CCCCCceeee--------ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--
Q 002641          757 GLRDINIHMK--------DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--  824 (897)
Q Consensus       757 ~~~~~~~~i~--------~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--  824 (897)
                      +.+|.+..+|        .++.||++.++.+.|++..+.++|+|.|+|||||.+.  .++++|.||+..|.-+.|-.+  
T Consensus       481 ~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~  560 (775)
T KOG0319|consen  481 GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGK  560 (775)
T ss_pred             cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCc
Confidence            4566666666        4789999999999999999999999999999999998  899999999999999999764  


Q ss_pred             EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       825 ~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      +|+||+.||-||+|++++.  .|+.++.+|++.|++++.+|.+..++||+.||.|.+|.=.|.
T Consensus       561 qliS~~adGliKlWnikt~--eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  561 QLISAGADGLIKLWNIKTN--ECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE  621 (775)
T ss_pred             EEEeccCCCcEEEEeccch--hhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence            9999999999999999998  699999999999999999999999999999999999965443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.52  E-value=9.7e-14  Score=153.78  Aligned_cols=121  Identities=19%  Similarity=0.320  Sum_probs=109.2

Q ss_pred             ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeecc---CCCCcEEEEEEeCC--EEEEEecCCeEEEEe
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDS---SENGKVLSIACFRD--KIFSGHSDGTIKVWT  839 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~---gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd  839 (897)
                      .....|..+++++.++|||.+++|.|.||+|.+||=.  +.+..+.   +|++.|++++|+||  +++|+|.|.++|+||
T Consensus       184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd  263 (603)
T KOG0318|consen  184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD  263 (603)
T ss_pred             ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence            4566788999999999999999999999999999955  6666666   89999999999998  999999999999999


Q ss_pred             CCCCc-----------------------------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCc
Q 002641          840 GRGSI-----------------------------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT  878 (897)
Q Consensus       840 ~~~~~-----------------------------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~t  878 (897)
                      +.+.+                                         ...+..+.||.+.|+++..+|+|.+|+|||.||.
T Consensus       264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~  343 (603)
T KOG0318|consen  264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH  343 (603)
T ss_pred             eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence            98765                                         2344567899999999999999999999999999


Q ss_pred             EEEEeCCCc
Q 002641          879 ARVRSNDSF  887 (897)
Q Consensus       879 IrlWdi~~~  887 (897)
                      |.-||..+|
T Consensus       344 I~~W~~~~g  352 (603)
T KOG0318|consen  344 INSWDSGSG  352 (603)
T ss_pred             EEEEecCCc
Confidence            999999988

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=7.1e-14  Score=161.94  Aligned_cols=117  Identities=19%  Similarity=0.245  Sum_probs=110.4

Q ss_pred             ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc
Q 002641          769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI  844 (897)
Q Consensus       769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~  844 (897)
                      ...|.+.++-+.|-+..-.++|||+|.+|+||+.+  +++.++.||-+.|..+.|++.  .++|+|.|-|||||+..++ 
T Consensus        47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr-  125 (1202)
T KOG0292|consen   47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR-  125 (1202)
T ss_pred             hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-
Confidence            45678888888999999999999999999999998  899999999999999999997  9999999999999999998 


Q ss_pred             ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       845 ~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                       .++..+.||+-.|.|..|+|....++|+|.|.||||||+.+-
T Consensus       126 -~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGL  167 (1202)
T KOG0292|consen  126 -KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGL  167 (1202)
T ss_pred             -ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecch
Confidence             699999999999999999999999999999999999999764

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.50  E-value=2.4e-14  Score=157.48  Aligned_cols=126  Identities=15%  Similarity=0.140  Sum_probs=109.3

Q ss_pred             ecccccccceeEeeecc-cccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeC
Q 002641          767 DIMKGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTG  840 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~  840 (897)
                      ..+.||...+.+..+.+ .+++++|||.|+.|+||++-   .+++++.||+.+|..++|+.+  .|+|+|.|++||+||+
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt  287 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT  287 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence            55688888888877776 89999999999999999975   899999999999999999986  9999999999999999


Q ss_pred             CCCcceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641          841 RGSILHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF-TYAIFIQV  895 (897)
Q Consensus       841 ~~~~~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~-~l~~l~~~  895 (897)
                      .+|  +++..|. -...++|+.|.|++ +.|++|+.|+.|+.||++++ .++.+.+.
T Consensus       288 ETG--~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h  341 (503)
T KOG0282|consen  288 ETG--QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH  341 (503)
T ss_pred             ccc--eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh
Confidence            999  4655554 23356899999998 99999999999999999999 65655443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.49  E-value=1.1e-13  Score=160.54  Aligned_cols=144  Identities=18%  Similarity=0.236  Sum_probs=125.6

Q ss_pred             ccCCCCCCCCCceeeee--------cccccccceeEeeecccccEEEEecCCCCeEEEeCC----c--------------
Q 002641          751 FAQDPQGLRDINIHMKD--------IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----E--------------  804 (897)
Q Consensus       751 ~~~~~~~~~~~~~~i~~--------~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~----~--------------  804 (897)
                      +.|.-....|.|+++|.        +++||...+-+..|-|....++|+|.|.+|||||+.    +              
T Consensus       105 yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~  184 (1202)
T KOG0292|consen  105 YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ  184 (1202)
T ss_pred             CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence            33444567889999984        688999999898899988999999999999999975    0              


Q ss_pred             -------------ceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCE
Q 002641          805 -------------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEM  869 (897)
Q Consensus       805 -------------~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~  869 (897)
                                   +.+++.||+..|.-++|+|.  +|+||+.|..||+|.....+.-.+.+.+||.+.|+|+-|+|..+.
T Consensus       185 ~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~l  264 (1202)
T KOG0292|consen  185 QGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDL  264 (1202)
T ss_pred             ccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccce
Confidence                         34567799999999999996  999999999999999986554557889999999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCc-cceeeec
Q 002641          870 LYSGSLDKTARVRSNDSF-TYAIFIQ  894 (897)
Q Consensus       870 L~SgS~D~tIrlWdi~~~-~l~~l~~  894 (897)
                      ++|.|.|++|||||+... .+++|++
T Consensus       265 IlSnsEDksirVwDm~kRt~v~tfrr  290 (1202)
T KOG0292|consen  265 ILSNSEDKSIRVWDMTKRTSVQTFRR  290 (1202)
T ss_pred             eEecCCCccEEEEecccccceeeeec
Confidence            999999999999999988 8888865

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=3.8e-13  Score=138.91  Aligned_cols=124  Identities=17%  Similarity=0.224  Sum_probs=112.5

Q ss_pred             cccccceeEeeecccccEEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCC-
Q 002641          770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG-  842 (897)
Q Consensus       770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~-  842 (897)
                      .+|++.++.++++|.|++|++||.|.++.||.-.    +++.++.||.+.|-||+|+++  +||+||.|++|-+|.+.. 
T Consensus        58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded  137 (312)
T KOG0645|consen   58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED  137 (312)
T ss_pred             ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence            4688999999999999999999999999999854    899999999999999999986  999999999999999984 


Q ss_pred             CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-Cc---cceeee
Q 002641          843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSND-SF---TYAIFI  893 (897)
Q Consensus       843 ~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~-~~---~l~~l~  893 (897)
                      +++.++..+.+|++.|--+.|+|....|+|+|.|.|||+|+-. .+   +.++|.
T Consensus       138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~  192 (312)
T KOG0645|consen  138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD  192 (312)
T ss_pred             CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec
Confidence            3578899999999999999999999999999999999999876 33   555554

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.49  E-value=4.1e-14  Score=144.23  Aligned_cols=131  Identities=20%  Similarity=0.266  Sum_probs=102.3

Q ss_pred             CCCCCceeeeecccc-------cccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeC-C-
Q 002641          757 GLRDINIHMKDIMKG-------LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFR-D-  824 (897)
Q Consensus       757 ~~~~~~~~i~~~l~~-------~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fsp-d-  824 (897)
                      ...|.+..+|+.+.|       |+.++..+.|+.|.++|++|+.++.+||+|++   -....+.+|.+.|..+.|.. | 
T Consensus        77 aaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~  156 (334)
T KOG0278|consen   77 AAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK  156 (334)
T ss_pred             hcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc
Confidence            345566677766554       56788888888888888888888888888876   34455678888888888865 3 


Q ss_pred             EEEEEecCCeEEEEeCCCCc------------------------------------------------------------
Q 002641          825 KIFSGHSDGTIKVWTGRGSI------------------------------------------------------------  844 (897)
Q Consensus       825 ~L~Sgs~DgtIrlWd~~~~~------------------------------------------------------------  844 (897)
                      .|+|.+.|++||+||.+++.                                                            
T Consensus       157 ~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k  236 (334)
T KOG0278|consen  157 CILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK  236 (334)
T ss_pred             eEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCC
Confidence            77777888888888888765                                                            


Q ss_pred             -------------------ceeEEEe-eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          845 -------------------LHLIQQI-REHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       845 -------------------~~~i~~l-~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                                         ...+..+ +||-++|.||.|+|||...+|||.|||||+|.+..+
T Consensus       237 ~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  237 EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence                               1222333 789999999999999999999999999999998776

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.48  E-value=1.9e-14  Score=150.63  Aligned_cols=126  Identities=26%  Similarity=0.328  Sum_probs=108.7

Q ss_pred             cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cc--------eeeccCCCCcEEEEEEeCC--EEEEEecCCeE
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--EL--------VHVDSSENGKVLSIACFRD--KIFSGHSDGTI  835 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~--------l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtI  835 (897)
                      +.-|.+.-+.+..|+|||.+++|||.||-|.+||+.  ++        ...|--|..+|.|+.|+.|  +++||+.||.|
T Consensus       208 IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI  287 (508)
T KOG0275|consen  208 IKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI  287 (508)
T ss_pred             eecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence            334445566778899999999999999999999975  22        2233347899999999998  99999999999


Q ss_pred             EEEeCCCCcceeEEEee-ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641          836 KVWTGRGSILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV  895 (897)
Q Consensus       836 rlWd~~~~~~~~i~~l~-gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~  895 (897)
                      |+|.+.++  .|++.|. .|++.|+|+.|+.|+..+.|+|.|.++|+--+++| ++..|+.+
T Consensus       288 KvWri~tG--~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH  347 (508)
T KOG0275|consen  288 KVWRIETG--QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH  347 (508)
T ss_pred             EEEEEecc--hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc
Confidence            99999999  6888887 89999999999999999999999999999999999 77777653

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.48  E-value=7e-14  Score=160.78  Aligned_cols=113  Identities=19%  Similarity=0.227  Sum_probs=103.4

Q ss_pred             cceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcceeE
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLI  848 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~i  848 (897)
                      ....+.+++.+..+|+|||.||+||+||++  +...++.+....|..|+|+|.   .|++++..|.+++||++... ++.
T Consensus       135 s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-r~~  213 (839)
T KOG0269|consen  135 SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-RCE  213 (839)
T ss_pred             ceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch-hHH
Confidence            455667778899999999999999999998  777888888889999999983   99999999999999999875 778


Q ss_pred             EEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       849 ~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ..|..|++.|.|+.|+|++.+|+|||.|++|+|||+.++
T Consensus       214 ~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~  252 (839)
T KOG0269|consen  214 KKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS  252 (839)
T ss_pred             HHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence            889999999999999999999999999999999999865

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.48  E-value=1.9e-13  Score=149.96  Aligned_cols=114  Identities=21%  Similarity=0.275  Sum_probs=101.1

Q ss_pred             cceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc------
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI------  844 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~------  844 (897)
                      .-++...++.+|..||+|+.||.+++|+.. ..+.++.-|+++|+++.|+.+  +|+|++-||++-+||..++.      
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~  315 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE  315 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence            445667778889999999999999999988 888899999999999999975  99999999999999997664      


Q ss_pred             ---------------------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          845 ---------------------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       845 ---------------------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                                                       ..++.+|.||.+.|.++.|+|.|..|+|+|.|+|++||++..+
T Consensus       316 ~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~  391 (524)
T KOG0273|consen  316 FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS  391 (524)
T ss_pred             eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence                                             3455688899999999999999999999999999999998765

>smart00504 Ubox Modified RING finger domain

Probab=99.47  E-value=4.6e-14  Score=118.59  Aligned_cols=63  Identities=44%  Similarity=0.879  Sum_probs=58.8

Q ss_pred             cccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHH
Q 002641          163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASW  227 (897)
Q Consensus       163 el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~  227 (897)
                      +|.||||+++|.|||+++|||+||+.||.+|+.. ...||.|+++++...+ .+|..+++.|++|
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l-~~~~~l~~~i~~~   63 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDL-IPNLALKSAIQEW   63 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhc-eeCHHHHHHHHhC
Confidence            5889999999999999999999999999999986 5689999999988889 5999999999976

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.46  E-value=1e-12  Score=134.30  Aligned_cols=134  Identities=21%  Similarity=0.217  Sum_probs=114.2

Q ss_pred             CCCceeeeecccc-c--------ccceeEeeecccccEEEEecCCCCeEEEeCC--------cceeeccCCCCcEEEEEE
Q 002641          759 RDINIHMKDIMKG-L--------RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--------ELVHVDSSENGKVLSIAC  821 (897)
Q Consensus       759 ~~~~~~i~~~l~~-~--------~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--------~~l~~l~gH~~~V~sV~f  821 (897)
                      +...+.+||.... +        ...+....+.+||.+++.+..-|...+|++-        +.+..++.|++.+....+
T Consensus       144 qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~l  223 (311)
T KOG0315|consen  144 QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLL  223 (311)
T ss_pred             CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEE
Confidence            3344778876443 1        1345566778899999999999999999963        577788999999999999


Q ss_pred             eCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641          822 FRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       822 spd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~  893 (897)
                      |||  +|+++|.|.+++||+..+. ++....+.||..+|+.++||.||++|++||.|+++|+||+..+ ....+.
T Consensus       224 SPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~  297 (311)
T KOG0315|consen  224 SPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ  297 (311)
T ss_pred             CCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence            998  9999999999999999987 5777889999999999999999999999999999999999998 554443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.46  E-value=3.4e-13  Score=136.66  Aligned_cols=130  Identities=18%  Similarity=0.256  Sum_probs=112.4

Q ss_pred             CCCCCceeeeecccc--------cccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--
Q 002641          757 GLRDINIHMKDIMKG--------LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--  824 (897)
Q Consensus       757 ~~~~~~~~i~~~l~~--------~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--  824 (897)
                      +..+.+..+|.+++|        |...+.-...+.|...++||+.|+.|.+||+.  +..+.+.||.+.|..|.|+.+  
T Consensus        35 cGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesS  114 (307)
T KOG0316|consen   35 CGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESS  114 (307)
T ss_pred             cCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcce
Confidence            456788899977665        33333333444577889999999999999987  899999999999999999986  


Q ss_pred             EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCcc
Q 002641          825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFT  888 (897)
Q Consensus       825 ~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~  888 (897)
                      .++|||.|.++|+||.+.....+++.+..-+..|.++.+.  +..|+.||.||++|.||++.|.
T Consensus       115 Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~  176 (307)
T KOG0316|consen  115 VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT  176 (307)
T ss_pred             EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce
Confidence            9999999999999999998888999999999999999886  7789999999999999999883

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.44  E-value=5.2e-13  Score=139.70  Aligned_cols=112  Identities=21%  Similarity=0.320  Sum_probs=96.3

Q ss_pred             ccceeEeeecc-cccEEEEecCCCCeEEEeCCc----ceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcc
Q 002641          773 RELRKYSPLAF-EMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL  845 (897)
Q Consensus       773 ~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~~----~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~  845 (897)
                      .+.+..+.|+| ....++.||+|++||+|++..    .-+....|.++|.+++|+.|  .+++|+.|+.+++||+.+++ 
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-  105 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-  105 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-
Confidence            35566677787 566777999999999999872    23455679999999999987  99999999999999999984 


Q ss_pred             eeEEEeeccCCCeEEEEEccCCC--EEEEEeCCCcEEEEeCCCc
Q 002641          846 HLIQQIREHTKAVTGLAILQSGE--MLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       846 ~~i~~l~gH~~~V~slafspdg~--~L~SgS~D~tIrlWdi~~~  887 (897)
                        +..+..|..+|.++.|-+...  .|++||+|+|||+||++..
T Consensus       106 --~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~  147 (347)
T KOG0647|consen  106 --VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS  147 (347)
T ss_pred             --eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence              778889999999999987654  8999999999999999986

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.44  E-value=6.8e-13  Score=155.87  Aligned_cols=123  Identities=21%  Similarity=0.214  Sum_probs=115.2

Q ss_pred             ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCcce
Q 002641          769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILH  846 (897)
Q Consensus       769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~  846 (897)
                      +.||...++...+...+.+++|||.|+++++||+.  .+.+++.||.+.|.++...+..+.+||.|.+||+|++.++  .
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~--~  322 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNG--A  322 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCc--c
Confidence            78899999999998889999999999999999987  9999999999999999999999999999999999999988  6


Q ss_pred             eEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641          847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV  895 (897)
Q Consensus       847 ~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~  895 (897)
                      +++.+.||+++|.++..+  +.++++||.|++|++||+.++ ++.++..+
T Consensus       323 ~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH  370 (537)
T KOG0274|consen  323 CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH  370 (537)
T ss_pred             eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCC
Confidence            899999999999999997  889999999999999999998 88877654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=5.8e-13  Score=136.44  Aligned_cols=117  Identities=16%  Similarity=0.240  Sum_probs=99.0

Q ss_pred             ccccccceeEeeecc-cccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC---CEEEEEecCCeEEEEeCCC
Q 002641          769 MKGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       769 l~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp---d~L~Sgs~DgtIrlWd~~~  842 (897)
                      .+.|+..+..+..+. +...++++|+|++||+|+..  +.+.++.||+..|+..+|+|   +.++|+|.||+.++||++.
T Consensus       100 ~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~  179 (311)
T KOG0277|consen  100 FKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRS  179 (311)
T ss_pred             HHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecC
Confidence            444565555555554 67778889999999999987  89999999999999999998   4999999999999999996


Q ss_pred             CcceeEEEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCc
Q 002641          843 SILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       843 ~~~~~i~~l~gH~~~V~slafsp-dg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      .- +.. .+..|...+.|+.|+. +.+.+++|+.|+.||.||++.-
T Consensus       180 ~g-k~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~  223 (311)
T KOG0277|consen  180 PG-KFM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL  223 (311)
T ss_pred             CC-cee-EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc
Confidence            52 333 3889999999999986 4689999999999999999875

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.43  E-value=4.8e-13  Score=143.36  Aligned_cols=119  Identities=18%  Similarity=0.195  Sum_probs=97.5

Q ss_pred             ccccccceeEeeecc-cccEEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCC
Q 002641          769 MKGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR  841 (897)
Q Consensus       769 l~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~  841 (897)
                      ..+|...+.-..++| +...++|+|-||+|+|||++    +.--..+.|.+.|.-|.|+.+  +|+||+.||+++|||++
T Consensus       253 f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR  332 (440)
T KOG0302|consen  253 FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLR  332 (440)
T ss_pred             ccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhh
Confidence            445555555455554 67789999999999999997    222233789999999999986  89999999999999999


Q ss_pred             CCc-ceeEEEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCc
Q 002641          842 GSI-LHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       842 ~~~-~~~i~~l~gH~~~V~slafspd-g~~L~SgS~D~tIrlWdi~~~  887 (897)
                      .-+ .+++..|+-|+.+|+++.|+|. ...|+.+|.|.+|.+||+...
T Consensus       333 ~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  333 QFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             hccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence            643 2678899999999999999996 467888889999999998643

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.43  E-value=7.7e-13  Score=137.73  Aligned_cols=128  Identities=20%  Similarity=0.228  Sum_probs=100.2

Q ss_pred             ecccccccceeEeeecc-cccEEEEecCCCCeEEEeCCc--------------c---eeeccCCCCcEEEEEEeC-C--E
Q 002641          767 DIMKGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHRE--------------L---VHVDSSENGKVLSIACFR-D--K  825 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~~--------------~---l~~l~gH~~~V~sV~fsp-d--~  825 (897)
                      ++...|.+.++...+.+ +|++++||+.||.|-+||+..              +   ..--.+|+..|.++.|.| |  +
T Consensus        37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm  116 (397)
T KOG4283|consen   37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM  116 (397)
T ss_pred             ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence            44555667777777665 688999999999999999751              1   011125788899999998 3  8


Q ss_pred             EEEEecCCeEEEEeCCCCc------------------------------------------ceeEEEeeccCCCeEEEEE
Q 002641          826 IFSGHSDGTIKVWTGRGSI------------------------------------------LHLIQQIREHTKAVTGLAI  863 (897)
Q Consensus       826 L~Sgs~DgtIrlWd~~~~~------------------------------------------~~~i~~l~gH~~~V~slaf  863 (897)
                      +.|+|.|+++||||..+-+                                          ..+.+++.||++.|.+|.|
T Consensus       117 FtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W  196 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW  196 (397)
T ss_pred             eecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence            9999999999999988654                                          3445678899999999999


Q ss_pred             ccCCC-EEEEEeCCCcEEEEeCCCc--cceeeec
Q 002641          864 LQSGE-MLYSGSLDKTARVRSNDSF--TYAIFIQ  894 (897)
Q Consensus       864 spdg~-~L~SgS~D~tIrlWdi~~~--~l~~l~~  894 (897)
                      +|..+ .|++||.||+||+||++..  ++.++-+
T Consensus       197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~  230 (397)
T KOG4283|consen  197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQ  230 (397)
T ss_pred             ccCceeEEEecCCCceEEEEEeecccceeEEeec
Confidence            99864 6889999999999999864  7776654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.43  E-value=3.6e-13  Score=154.32  Aligned_cols=118  Identities=19%  Similarity=0.295  Sum_probs=111.2

Q ss_pred             ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCC
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~  842 (897)
                      -.+.||+-.+.+...++|++.++|||.|++|++|-++  .+.+.+-+|+..|++|.|-|+  .++|||.||.||-||...
T Consensus       544 lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k  623 (888)
T KOG0306|consen  544 LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK  623 (888)
T ss_pred             eeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh
Confidence            3578999999999999999999999999999999776  899999999999999999997  899999999999999987


Q ss_pred             CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641          843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDS  886 (897)
Q Consensus       843 ~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~  886 (897)
                      -  ..++.+.||...|+|++.+|+|.+++|+|.|++||+|....
T Consensus       624 F--e~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  624 F--EEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             h--hhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            6  68999999999999999999999999999999999998654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.43  E-value=4.1e-13  Score=143.38  Aligned_cols=134  Identities=22%  Similarity=0.232  Sum_probs=121.1

Q ss_pred             CCCceeeee--------cccccccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeC--CE
Q 002641          759 RDINIHMKD--------IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFR--DK  825 (897)
Q Consensus       759 ~~~~~~i~~--------~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fsp--d~  825 (897)
                      .+.+.++||        .++||...+.-+.+...|++++++|.|-.+++||..   ++++...||...|.+|.|-|  |+
T Consensus       128 ~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~  207 (406)
T KOG0295|consen  128 EDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDH  207 (406)
T ss_pred             CCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCe
Confidence            455566664        577888888888899999999999999999999997   78888999999999999998  59


Q ss_pred             EEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeec
Q 002641          826 IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ  894 (897)
Q Consensus       826 L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~  894 (897)
                      ++|+|.|.+|+.|++.++  .++.+|.+|...|.-++.+.||.+++|+|.|.++++|-+.++ ++..|+.
T Consensus       208 ilS~srD~tik~We~~tg--~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~  275 (406)
T KOG0295|consen  208 ILSCSRDNTIKAWECDTG--YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELRE  275 (406)
T ss_pred             eeecccccceeEEecccc--eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhc
Confidence            999999999999999998  699999999999999999999999999999999999999998 7666654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.43  E-value=7.7e-13  Score=155.43  Aligned_cols=134  Identities=22%  Similarity=0.312  Sum_probs=112.0

Q ss_pred             CCCCCCceeeeecccc--------cccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCCE
Q 002641          756 QGLRDINIHMKDIMKG--------LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDK  825 (897)
Q Consensus       756 ~~~~~~~~~i~~~l~~--------~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd~  825 (897)
                      .+..|.+..+|+..+|        |...+.+.  .....++++||.|.+|++|++.  ..++++.+|.++|.+|..+.++
T Consensus       266 sgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~--~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~  343 (537)
T KOG0274|consen  266 SGSTDKTERVWDCSTGECTHSLQGHTSSVRCL--TIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPL  343 (537)
T ss_pred             EEecCCcEEeEecCCCcEEEEecCCCceEEEE--EccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCE
Confidence            3556788889975444        33333322  2245678899999999999998  8999999999999999999889


Q ss_pred             EEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc--cceeeec
Q 002641          826 IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF--TYAIFIQ  894 (897)
Q Consensus       826 L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~--~l~~l~~  894 (897)
                      +++|+.||+|++||+.++  +++.++.||+.+|.++.+.+. .+++|||.|++|++||+++.  ++.+|..
T Consensus       344 lvsgs~d~~v~VW~~~~~--~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~  411 (537)
T KOG0274|consen  344 LVSGSYDGTVKVWDPRTG--KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG  411 (537)
T ss_pred             EEEEecCceEEEEEhhhc--eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC
Confidence            999999999999999987  799999999999999988644 89999999999999999988  6666554

>PTZ00421 coronin; Provisional

Probab=99.42  E-value=2.3e-12  Score=150.96  Aligned_cols=117  Identities=11%  Similarity=0.192  Sum_probs=100.3

Q ss_pred             ccccccceeEeeecccc-cEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCC
Q 002641          769 MKGLRELRKYSPLAFEM-VKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS  843 (897)
Q Consensus       769 l~~~~~~~~~~~~s~d~-~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~  843 (897)
                      +.+|...+..+.+.+++ .+|+||+.|++|+|||+.  +.+..+.+|.+.|.+++|+|+  +|++|+.||+|++||++++
T Consensus       121 L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg  200 (493)
T PTZ00421        121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG  200 (493)
T ss_pred             ecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC
Confidence            45677777788888864 799999999999999987  677888999999999999997  9999999999999999988


Q ss_pred             cceeEEEeeccCCC-eEEEEEccCCCEEEEEe----CCCcEEEEeCCCc
Q 002641          844 ILHLIQQIREHTKA-VTGLAILQSGEMLYSGS----LDKTARVRSNDSF  887 (897)
Q Consensus       844 ~~~~i~~l~gH~~~-V~slafspdg~~L~SgS----~D~tIrlWdi~~~  887 (897)
                        ..+..+.+|.+. +..+.|++++..+++++    .|++|++||+++.
T Consensus       201 --~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~  247 (493)
T PTZ00421        201 --TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM  247 (493)
T ss_pred             --cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence              467889999875 45788999988887765    4799999999875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=8.2e-13  Score=135.33  Aligned_cols=111  Identities=20%  Similarity=0.201  Sum_probs=98.2

Q ss_pred             ceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcceeE
Q 002641          775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLI  848 (897)
Q Consensus       775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~i  848 (897)
                      ...+.|.....+.+++++.||+++|||..   .+++.++.|..+|.++.|++.   .++++|.|+|||+|+..-+  ..+
T Consensus        63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--~Sv  140 (311)
T KOG0277|consen   63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--NSV  140 (311)
T ss_pred             eeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC--cce
Confidence            34455555567789999999999999976   899999999999999999973   7888899999999999876  579


Q ss_pred             EEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCc
Q 002641          849 QQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       849 ~~l~gH~~~V~slafspd-g~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ++|.||..-|...+|+|. ++.++|+|.|+++++||++..
T Consensus       141 ~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~  180 (311)
T KOG0277|consen  141 QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP  180 (311)
T ss_pred             EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC
Confidence            999999999999999996 799999999999999999874

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.42  E-value=4.9e-13  Score=152.38  Aligned_cols=129  Identities=27%  Similarity=0.365  Sum_probs=111.0

Q ss_pred             CCCCCceeee--------ecccccccceeEeeecccccEEEEecCCCCeEEEeCCcceeeccCCCCcEEEEEEeCC-EEE
Q 002641          757 GLRDINIHMK--------DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD-KIF  827 (897)
Q Consensus       757 ~~~~~~~~i~--------~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~~l~~l~gH~~~V~sV~fspd-~L~  827 (897)
                      +..|.+..++        .+++||+..+++.....++. ++|||+|.|+++|-..++...++||+..||+|++.|+ .++
T Consensus        77 g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~~v  155 (745)
T KOG0301|consen   77 GGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENTYV  155 (745)
T ss_pred             ecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcccCCcchheeeeeecCCCcEE
Confidence            3455555555        36889998888887777777 9999999999999999999999999999999999986 999


Q ss_pred             EEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCcccee
Q 002641          828 SGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAI  891 (897)
Q Consensus       828 Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l~~  891 (897)
                      |||.|.+||+|.-.+    .+.+|.||++-|..+++-+++ .|+|+|.||.||+||+.++.+..
T Consensus       156 TgsaDKtIklWk~~~----~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~  214 (745)
T KOG0301|consen  156 TGSADKTIKLWKGGT----LLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLE  214 (745)
T ss_pred             eccCcceeeeccCCc----hhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCceeee
Confidence            999999999999743    589999999999999998764 58999999999999996665443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.42  E-value=1e-12  Score=149.79  Aligned_cols=126  Identities=21%  Similarity=0.314  Sum_probs=114.6

Q ss_pred             CCCCCCceeee------ecccccccceeEeeecccccEEEEecCCCCeEEEeCCcceeeccCCCCcEEEEEEeCC-EEEE
Q 002641          756 QGLRDINIHMK------DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD-KIFS  828 (897)
Q Consensus       756 ~~~~~~~~~i~------~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~~l~~l~gH~~~V~sV~fspd-~L~S  828 (897)
                      .+..|.+..+|      ..+.+|...++....-++. .++|||.|++||+|.-++.+++|.||++.|..+++-++ .|+|
T Consensus       117 SgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flS  195 (745)
T KOG0301|consen  117 SGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLS  195 (745)
T ss_pred             ecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEe
Confidence            46678888888      3588999999888777777 89999999999999999999999999999999999998 9999


Q ss_pred             EecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641          829 GHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSND  885 (897)
Q Consensus       829 gs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~  885 (897)
                      ||+||.||+|++...   ++....||+..|++++..+++..++|+|.|+|+|+|+..
T Consensus       196 csNDg~Ir~w~~~ge---~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  196 CSNDGSIRLWDLDGE---VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             ecCCceEEEEeccCc---eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            999999999999554   789999999999999988888999999999999999976

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.41  E-value=7e-13  Score=138.01  Aligned_cols=106  Identities=23%  Similarity=0.296  Sum_probs=85.4

Q ss_pred             EEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCc-------------ceeE
Q 002641          787 KVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI-------------LHLI  848 (897)
Q Consensus       787 ~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~-------------~~~i  848 (897)
                      +||+|..|-.|++.|+.  ...+++.||.+.|.+|.|+|.   .|+|||.||+||+||++...             ++.+
T Consensus       160 LiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~  239 (397)
T KOG4283|consen  160 LIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPIL  239 (397)
T ss_pred             EEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccc
Confidence            45556666666666665  578889999999999999995   89999999999999998542             1222


Q ss_pred             EEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc--cceee
Q 002641          849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF--TYAIF  892 (897)
Q Consensus       849 ~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~--~l~~l  892 (897)
                      .+-..|.+.|..++|..+|.++++.+.|..+++|+..+|  .+..|
T Consensus       240 ~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~  285 (397)
T KOG4283|consen  240 KTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREF  285 (397)
T ss_pred             cccccccceeeeeeecccchhhhhccCccceEEeecccCccccccc
Confidence            334467889999999999999999999999999999988  44444

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=1.9e-12  Score=142.21  Aligned_cols=134  Identities=18%  Similarity=0.228  Sum_probs=114.3

Q ss_pred             CCceeeeec--------ccccccceeEeeecccccEEEEecCCCCeEEEeCC-----------cceeeccCCCCcEEEEE
Q 002641          760 DINIHMKDI--------MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----------ELVHVDSSENGKVLSIA  820 (897)
Q Consensus       760 ~~~~~i~~~--------l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----------~~l~~l~gH~~~V~sV~  820 (897)
                      ....|+|..        +..|-..+.+..|+.||.+|+|||.||.|.+|++.           ..++.|.+|+-+|+.+.
T Consensus       102 ~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~  181 (476)
T KOG0646|consen  102 SGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQ  181 (476)
T ss_pred             cCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEE
Confidence            344788864        45577888999999999999999999999999963           47788889999999998


Q ss_pred             EeCC----EEEEEecCCeEEEEeCCCCc----------------------------------------------------
Q 002641          821 CFRD----KIFSGHSDGTIKVWTGRGSI----------------------------------------------------  844 (897)
Q Consensus       821 fspd----~L~Sgs~DgtIrlWd~~~~~----------------------------------------------------  844 (897)
                      ..+.    +++|.|.|.+||+||+..+.                                                    
T Consensus       182 ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~  261 (476)
T KOG0646|consen  182 IGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGR  261 (476)
T ss_pred             ecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccc
Confidence            8753    99999999999999998876                                                    


Q ss_pred             ---ceeEEEeeccCC--CeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641          845 ---LHLIQQIREHTK--AVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       845 ---~~~i~~l~gH~~--~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~  893 (897)
                         ...+..+.||.+  +|+|++++-||..|+||+.||+++|||+.+. +++++.
T Consensus       262 ~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  262 HEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             ccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence               123456778998  9999999999999999999999999999987 666654

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.39  E-value=2.9e-12  Score=142.24  Aligned_cols=129  Identities=13%  Similarity=0.197  Sum_probs=113.7

Q ss_pred             eeeeec------ccccccceeEeeeccc-ccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEec
Q 002641          763 IHMKDI------MKGLRELRKYSPLAFE-MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHS  831 (897)
Q Consensus       763 ~~i~~~------l~~~~~~~~~~~~s~d-~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~  831 (897)
                      .++||.      +.||...++.+.+.+. .-+++|||.|++|-+++=.  +...++..|...|.||.|+||  +++|.|.
T Consensus       131 ~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs  210 (603)
T KOG0318|consen  131 VFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS  210 (603)
T ss_pred             EEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC
Confidence            566653      6678888888888764 5689999999999999955  888889999999999999998  9999999


Q ss_pred             CCeEEEEeCCCCcceeEEEee---ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641          832 DGTIKVWTGRGSILHLIQQIR---EHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       832 DgtIrlWd~~~~~~~~i~~l~---gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~  893 (897)
                      ||+|.+||-++++  .+..+.   +|++.|.+++|+||+..++|+|.|+++||||+.+. ..+++.
T Consensus       211 Dgki~iyDGktge--~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~  274 (603)
T KOG0318|consen  211 DGKIYIYDGKTGE--KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWP  274 (603)
T ss_pred             CccEEEEcCCCcc--EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEee
Confidence            9999999999984  677777   89999999999999999999999999999999998 666654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.39  E-value=1.7e-12  Score=142.36  Aligned_cols=119  Identities=18%  Similarity=0.213  Sum_probs=101.3

Q ss_pred             cccccccceeE-eeecccccEEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEe
Q 002641          768 IMKGLRELRKY-SPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWT  839 (897)
Q Consensus       768 ~l~~~~~~~~~-~~~s~d~~~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd  839 (897)
                      +..+|...+.- .|+..+...++|++.|+.+.|||++    +..+...+|.+.|+|++|+|-   .|||||.|++|++||
T Consensus       222 ~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwD  301 (422)
T KOG0264|consen  222 IFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWD  301 (422)
T ss_pred             EeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEee
Confidence            34455544443 3344467789999999999999987    577777899999999999992   999999999999999


Q ss_pred             CCCCcceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc
Q 002641          840 GRGSILHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       840 ~~~~~~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~  887 (897)
                      +++-. .++.++.+|...|.+|.|+|+. ..|+|+|.|+.+.|||+..-
T Consensus       302 lRnL~-~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i  349 (422)
T KOG0264|consen  302 LRNLN-KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI  349 (422)
T ss_pred             chhcc-cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence            99875 6799999999999999999985 78999999999999999763

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.38  E-value=3.3e-12  Score=144.80  Aligned_cols=137  Identities=23%  Similarity=0.311  Sum_probs=115.2

Q ss_pred             CCCCCceeeeec----------ccccccceeEeee-cccccEEEEecCCCCeEEEeCCc----ce--------eecc-CC
Q 002641          757 GLRDINIHMKDI----------MKGLRELRKYSPL-AFEMVKVLSNGHDSSADFWNHRE----LV--------HVDS-SE  812 (897)
Q Consensus       757 ~~~~~~~~i~~~----------l~~~~~~~~~~~~-s~d~~~LaSgs~DgtIklWd~~~----~l--------~~l~-gH  812 (897)
                      +..|.++.+|..          +..|.+.+.+... ..+...+||||-|+.|.|||+..    .+        ..+. ||
T Consensus        91 ~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~  170 (735)
T KOG0308|consen   91 ASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP  170 (735)
T ss_pred             ecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence            345666666643          4557888888888 77888999999999999999871    11        1222 78


Q ss_pred             CCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cc
Q 002641          813 NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TY  889 (897)
Q Consensus       813 ~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l  889 (897)
                      ...|++++-++.  .|++||..+.+++||.++.  .-+..++||+..|..+-.++||+.++|||.||+||+||++.. ++
T Consensus       171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~--~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl  248 (735)
T KOG0308|consen  171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC--KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL  248 (735)
T ss_pred             ccceeeeecCCcceEEEecCcccceEEeccccc--cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence            899999999997  9999999999999999998  457788999999999999999999999999999999999987 88


Q ss_pred             eeeecc
Q 002641          890 AIFIQV  895 (897)
Q Consensus       890 ~~l~~~  895 (897)
                      .+|.-+
T Consensus       249 ~T~~vH  254 (735)
T KOG0308|consen  249 ATYIVH  254 (735)
T ss_pred             eeEEec
Confidence            877543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.38  E-value=2e-12  Score=138.84  Aligned_cols=128  Identities=20%  Similarity=0.241  Sum_probs=108.0

Q ss_pred             CCCCCCceeeeeccccc-------ccceeEeeecccccEEEEecCCCCeEEEeCC-----cceeeccCCCCcEEEEEEeC
Q 002641          756 QGLRDINIHMKDIMKGL-------RELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFR  823 (897)
Q Consensus       756 ~~~~~~~~~i~~~l~~~-------~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fsp  823 (897)
                      .+..|-++..||...+.       .....++...+..++|++||.|..+++||.+     -+..+|.||++.|.+|.|+|
T Consensus       276 S~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp  355 (423)
T KOG0313|consen  276 SVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP  355 (423)
T ss_pred             eecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCC
Confidence            34567778888865542       2334455666788899999999999999986     47788999999999999999


Q ss_pred             C---EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641          824 D---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSND  885 (897)
Q Consensus       824 d---~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~  885 (897)
                      .   +|+|||.||++|+||+++.. .++..+.+|...|.++.|. +|..|+|||.|++|+++.-.
T Consensus       356 ~~~~~~~S~S~D~t~klWDvRS~k-~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  356 TNEFQLVSGSYDNTVKLWDVRSTK-APLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CCceEEEEEecCCeEEEEEeccCC-CcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence            5   99999999999999999874 5789999999999999996 57789999999999998643

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.37  E-value=1.4e-12  Score=136.54  Aligned_cols=124  Identities=18%  Similarity=0.313  Sum_probs=109.3

Q ss_pred             ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCC
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~  842 (897)
                      ..++||+..+....+-..|+.++++|+|.+..+||+.  .++..+.||....+.++-+|.  ++++.|.|.|.|+||++.
T Consensus       266 ~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe  345 (481)
T KOG0300|consen  266 MRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE  345 (481)
T ss_pred             eeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh
Confidence            3467888888888887889999999999999999997  899999999999999999997  889999999999999996


Q ss_pred             CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc--cceee
Q 002641          843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF--TYAIF  892 (897)
Q Consensus       843 ~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~--~l~~l  892 (897)
                      . .+.+..|+||+..|+++.|.. +..++|||.|.||++||+++-  .+.++
T Consensus       346 a-I~sV~VFQGHtdtVTS~vF~~-dd~vVSgSDDrTvKvWdLrNMRsplATI  395 (481)
T KOG0300|consen  346 A-IQSVAVFQGHTDTVTSVVFNT-DDRVVSGSDDRTVKVWDLRNMRSPLATI  395 (481)
T ss_pred             h-cceeeeecccccceeEEEEec-CCceeecCCCceEEEeeeccccCcceee
Confidence            5 377899999999999999975 556999999999999999874  44443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.37  E-value=3.3e-12  Score=134.46  Aligned_cols=110  Identities=23%  Similarity=0.331  Sum_probs=100.6

Q ss_pred             eeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC----EEEEEecCCeEEEEeCCCCcceeEE
Q 002641          776 RKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGSILHLIQ  849 (897)
Q Consensus       776 ~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd----~L~Sgs~DgtIrlWd~~~~~~~~i~  849 (897)
                      .....++.++.++||||.|-+|+|||+.  ..+..+..|.+.|+++.|.++    .|+||+.||.|-+|++...  .++.
T Consensus        44 ~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W--~~~~  121 (362)
T KOG0294|consen   44 GSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW--ELLK  121 (362)
T ss_pred             cceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe--EEee
Confidence            3444556679999999999999999998  677788899999999999975    7999999999999999988  6899


Q ss_pred             EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          850 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       850 ~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      .+++|++.|+.++.+|.|+.-+|.+.|+++|+||+-+|
T Consensus       122 slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G  159 (362)
T KOG0294|consen  122 SLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG  159 (362)
T ss_pred             eecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence            99999999999999999999999999999999999877

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=2.3e-12  Score=146.93  Aligned_cols=120  Identities=22%  Similarity=0.272  Sum_probs=108.4

Q ss_pred             cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC---CEEEEEe--cCCeEEEEeC
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR---DKIFSGH--SDGTIKVWTG  840 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp---d~L~Sgs--~DgtIrlWd~  840 (897)
                      ++.+|...++-..+++|+.++|||+.|..+.|||..  .....+..|+++|.+++|+|   ++||+|+  .|++|++||+
T Consensus       296 ~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~  375 (484)
T KOG0305|consen  296 TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNT  375 (484)
T ss_pred             hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence            477899999999999999999999999999999986  88889999999999999998   3899864  6999999999


Q ss_pred             CCCc-----------------------------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcE
Q 002641          841 RGSI-----------------------------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTA  879 (897)
Q Consensus       841 ~~~~-----------------------------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tI  879 (897)
                      .++.                                         ...+..+.||+..|.+++++|||..+++|+.|.|+
T Consensus       376 ~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETl  455 (484)
T KOG0305|consen  376 NTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETL  455 (484)
T ss_pred             CCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcE
Confidence            9775                                         34566788999999999999999999999999999


Q ss_pred             EEEeCCCc
Q 002641          880 RVRSNDSF  887 (897)
Q Consensus       880 rlWdi~~~  887 (897)
                      ++|++-+.
T Consensus       456 rfw~~f~~  463 (484)
T KOG0305|consen  456 RFWNLFDE  463 (484)
T ss_pred             EeccccCC
Confidence            99998763

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.37  E-value=2.1e-12  Score=142.64  Aligned_cols=114  Identities=13%  Similarity=0.193  Sum_probs=103.1

Q ss_pred             cccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcce
Q 002641          772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILH  846 (897)
Q Consensus       772 ~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~  846 (897)
                      .++.+....|-.||.+++.|+..|.|+|+|++  ..++.+.+|+.+|..+.|+|.   ++++|+.|+++++||+.+..  
T Consensus        67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--  144 (487)
T KOG0310|consen   67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--  144 (487)
T ss_pred             hccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--
Confidence            45677777888899999999999999999977  588999999999999999994   99999999999999999983  


Q ss_pred             eEEEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCc
Q 002641          847 LIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       847 ~i~~l~gH~~~V~slafspd-g~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ....+.||+++|.|.+|+|. +..++|||.||+||+||+++.
T Consensus       145 v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~  186 (487)
T KOG0310|consen  145 VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL  186 (487)
T ss_pred             EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence            35589999999999999996 568999999999999999875

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.37  E-value=1.4e-12  Score=134.16  Aligned_cols=129  Identities=18%  Similarity=0.241  Sum_probs=111.4

Q ss_pred             ecccccccceeEeeecccccEEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeC---CEEEEEecCCeEEEEe
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWT  839 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fsp---d~L~Sgs~DgtIrlWd  839 (897)
                      .-..+|...+..+.+..+|.++++|+.|+++++|++.    .......||.+.|-.++|+|   |.+++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            3456677788888899999999999999999999987    34445668999999999986   5999999999999999


Q ss_pred             CCCCc---------------------------------------------------------------------------
Q 002641          840 GRGSI---------------------------------------------------------------------------  844 (897)
Q Consensus       840 ~~~~~---------------------------------------------------------------------------  844 (897)
                      ++.++                                                                           
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I  173 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI  173 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence            99765                                                                           


Q ss_pred             -----ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641          845 -----LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV  895 (897)
Q Consensus       845 -----~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~  895 (897)
                           +++++.++.|.....|+.|+|+|++|++||.|-.+-+||+..- |.+.|.++
T Consensus       174 LsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl  230 (313)
T KOG1407|consen  174 LSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL  230 (313)
T ss_pred             EeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc
Confidence                 5667788899999999999999999999999999999999886 77777653

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.36  E-value=5.4e-12  Score=144.93  Aligned_cols=117  Identities=22%  Similarity=0.321  Sum_probs=104.4

Q ss_pred             ceeEeeecccccEEEEecCC-CCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEE
Q 002641          775 LRKYSPLAFEMVKVLSNGHD-SSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ  849 (897)
Q Consensus       775 ~~~~~~~s~d~~~LaSgs~D-gtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~  849 (897)
                      .+....++..|.|||-|+.. |.+-||+..  ..+-..+||...+.+++++||  +++||+.||.|||||...+  -|+.
T Consensus       309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg--fC~v  386 (893)
T KOG0291|consen  309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG--FCFV  386 (893)
T ss_pred             eeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc--eEEE
Confidence            33445566679999998877 899999987  666677899999999999999  9999999999999999998  6999


Q ss_pred             EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641          850 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       850 ~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~  893 (897)
                      +|..|+..|+.+.|+..|+.++|.|.|||||.||+..+ ..++|.
T Consensus       387 TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft  431 (893)
T KOG0291|consen  387 TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT  431 (893)
T ss_pred             EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec
Confidence            99999999999999999999999999999999999887 666664

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.35  E-value=2.5e-12  Score=138.53  Aligned_cols=116  Identities=18%  Similarity=0.205  Sum_probs=100.6

Q ss_pred             ccccccceeEee-ecccccEEEEecCCCCeEEEeCC---------cceeeccCCCCcEEEEEEeCC---EEEEEecCCeE
Q 002641          769 MKGLRELRKYSP-LAFEMVKVLSNGHDSSADFWNHR---------ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTI  835 (897)
Q Consensus       769 l~~~~~~~~~~~-~s~d~~~LaSgs~DgtIklWd~~---------~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtI  835 (897)
                      ..||+..+--+. .+.+...|||||.|.+|.||++.         ..+..+.||...|.-|+|+|.   .|+|+|.|.+|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            456665554444 44478899999999999999975         467788899999999999994   99999999999


Q ss_pred             EEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          836 KVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       836 rlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      .+||+.++.  .+-++. |..-|+++.|+-||.+|++.+.|+.|||||.++|
T Consensus       157 ~iWnv~tge--ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~  205 (472)
T KOG0303|consen  157 SIWNVGTGE--ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG  205 (472)
T ss_pred             EEEeccCCc--eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC
Confidence            999999994  455566 9999999999999999999999999999999998

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.35  E-value=7.3e-12  Score=136.36  Aligned_cols=118  Identities=19%  Similarity=0.199  Sum_probs=101.4

Q ss_pred             cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccC--CCCcEEEEEEeCC--EEEEEecCCeEEEEeCC
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSS--ENGKVLSIACFRD--KIFSGHSDGTIKVWTGR  841 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~g--H~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~  841 (897)
                      ....|...+......+.|.|++++|.||++.+.|+.  ..+.....  ..-.+++.+|+||  +|.+|..||.|++||++
T Consensus       298 ~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk  377 (506)
T KOG0289|consen  298 SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK  377 (506)
T ss_pred             ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence            345577888888888999999999999999999987  33322222  2345899999999  89999999999999999


Q ss_pred             CCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          842 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       842 ~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      .+  ..+..|.||+++|..++|+.+|.+|++++.|+.|++||+|.-
T Consensus       378 s~--~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl  421 (506)
T KOG0289|consen  378 SQ--TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL  421 (506)
T ss_pred             Cc--cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence            88  368899999999999999999999999999999999999875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.35  E-value=8.5e-12  Score=155.63  Aligned_cols=120  Identities=18%  Similarity=0.188  Sum_probs=101.9

Q ss_pred             cccccceeEeeecccccEEEEecCCCCeEEEeCCc----------ceeeccCCCCcEEEEEEeCC---EEEEEecCCeEE
Q 002641          770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE----------LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIK  836 (897)
Q Consensus       770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~----------~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIr  836 (897)
                      .+|...+..+.++++|.++++|+.|++|+|||+..          ....+ .+...|.+++|++.   +|++|+.||+|+
T Consensus       480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            34678889999999999999999999999999741          11122 23567999999873   999999999999


Q ss_pred             EEeCCCCcceeEEEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641          837 VWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       837 lWd~~~~~~~~i~~l~gH~~~V~slafsp-dg~~L~SgS~D~tIrlWdi~~~-~l~~l  892 (897)
                      +||+.++  +.+..+.+|.+.|++++|+| ++.+|+|||.|++|++||++++ .+.++
T Consensus       559 lWd~~~~--~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~  614 (793)
T PLN00181        559 VWDVARS--QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI  614 (793)
T ss_pred             EEECCCC--eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            9999987  57888999999999999997 7899999999999999999987 55444

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.34  E-value=1.4e-11  Score=131.85  Aligned_cols=135  Identities=13%  Similarity=0.148  Sum_probs=115.9

Q ss_pred             CCCCCceeeeec--------ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--
Q 002641          757 GLRDINIHMKDI--------MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--  824 (897)
Q Consensus       757 ~~~~~~~~i~~~--------l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--  824 (897)
                      +..|..-++|++        +.+|++.+..+.|+.+|.+||||+.+|.|+||...  .....+...-+.+--+.|+|.  
T Consensus        82 GGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~  161 (399)
T KOG0296|consen   82 GGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH  161 (399)
T ss_pred             cCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccccc
Confidence            445555677754        67899999999999999999999999999999987  444444455677888999995  


Q ss_pred             EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641          825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       825 ~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~  893 (897)
                      +|+.|+.||.+-+|.+.++  ...+.+.||+.++++-.|.|+|+.+++|..||+|++||.++| .+.++.
T Consensus       162 illAG~~DGsvWmw~ip~~--~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  162 ILLAGSTDGSVWMWQIPSQ--ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT  229 (399)
T ss_pred             EEEeecCCCcEEEEECCCc--ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEec
Confidence            9999999999999999986  467899999999999999999999999999999999999999 555544

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.34  E-value=6.5e-12  Score=131.53  Aligned_cols=137  Identities=20%  Similarity=0.254  Sum_probs=114.6

Q ss_pred             CCCCceeeee---------cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC---
Q 002641          758 LRDINIHMKD---------IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR---  823 (897)
Q Consensus       758 ~~~~~~~i~~---------~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp---  823 (897)
                      ..|..+.+|.         ++++|...+--..+..|+..|+|+|.|++++.||+.  +..+.+++|.+.|.++.-+.   
T Consensus        66 G~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~  145 (338)
T KOG0265|consen   66 GSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGP  145 (338)
T ss_pred             CCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCC
Confidence            3555677775         466788777777788899999999999999999987  89999999999999998332   


Q ss_pred             CEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecccC
Q 002641          824 DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQVVD  897 (897)
Q Consensus       824 d~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~~d  897 (897)
                      .++.||+.|||+||||+++.  .+++++. .+..++++.|..++..++||+-|+.|++||++.+ .+-++...+|
T Consensus       146 ~lv~SgsdD~t~kl~D~R~k--~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D  217 (338)
T KOG0265|consen  146 QLVCSGSDDGTLKLWDIRKK--EAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD  217 (338)
T ss_pred             eEEEecCCCceEEEEeeccc--chhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccC
Confidence            39999999999999999976  4566664 3456899999999999999999999999999887 6666666554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.34  E-value=4.8e-12  Score=139.78  Aligned_cols=121  Identities=19%  Similarity=0.299  Sum_probs=97.5

Q ss_pred             ecccccccceeEeeecc-cccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeC
Q 002641          767 DIMKGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTG  840 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~  840 (897)
                      ..+.+|+..+.++.|++ ++..+++|++|+.+++||+.  .....+.+|++.|.|.+|+|.   +++|||.||+||+||+
T Consensus       104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt  183 (487)
T KOG0310|consen  104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT  183 (487)
T ss_pred             HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence            34567788888888877 56678888899999999987  445578899999999999983   8999999999999999


Q ss_pred             CCCc----------------------------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEE
Q 002641          841 RGSI----------------------------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTAR  880 (897)
Q Consensus       841 ~~~~----------------------------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIr  880 (897)
                      +...                                        .+.+..+..|.+.|+|+.+..+++.|+|||.|+.++
T Consensus       184 R~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VK  263 (487)
T KOG0310|consen  184 RSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVK  263 (487)
T ss_pred             ccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceE
Confidence            8652                                        111222234999999999999999999999999999


Q ss_pred             EEeCCCc
Q 002641          881 VRSNDSF  887 (897)
Q Consensus       881 lWdi~~~  887 (897)
                      +||+.+-
T Consensus       264 Vfd~t~~  270 (487)
T KOG0310|consen  264 VFDTTNY  270 (487)
T ss_pred             EEEccce
Confidence            9996554

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.33  E-value=4.8e-12  Score=132.58  Aligned_cols=129  Identities=13%  Similarity=0.142  Sum_probs=109.3

Q ss_pred             ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--------------------cceeeccCCCCcEEEEEEeCC--
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--------------------ELVHVDSSENGKVLSIACFRD--  824 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--------------------~~l~~l~gH~~~V~sV~fspd--  824 (897)
                      ..+..|+...+.-.|++||.++|+||.|.+|+|.|+.                    .+++++-.|...|.++.|+|.  
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            4567889999999999999999999999999999975                    267788889999999999995  


Q ss_pred             EEEEEecCCeEEEEeCCCCc------------------------------------------ceeE---EEeeccCCCeE
Q 002641          825 KIFSGHSDGTIKVWTGRGSI------------------------------------------LHLI---QQIREHTKAVT  859 (897)
Q Consensus       825 ~L~Sgs~DgtIrlWd~~~~~------------------------------------------~~~i---~~l~gH~~~V~  859 (897)
                      +|+||+.|++||++|.....                                          .++.   ..-.+|+++|+
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~  265 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT  265 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence            99999999999999987532                                          0000   01136999999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641          860 GLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV  895 (897)
Q Consensus       860 slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~  895 (897)
                      +|.+++.|+..++||.||.|++||--++ |+.+|.+.
T Consensus       266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A  302 (430)
T KOG0640|consen  266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA  302 (430)
T ss_pred             EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhh
Confidence            9999999999999999999999998777 87777653

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.32  E-value=6.4e-12  Score=150.08  Aligned_cols=117  Identities=19%  Similarity=0.280  Sum_probs=108.0

Q ss_pred             cccccccceeEeeecccccEEEEecCCCCeEEEeCC--------------------cceeeccCCCCcEEEEEEeCC--E
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--------------------ELVHVDSSENGKVLSIACFRD--K  825 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--------------------~~l~~l~gH~~~V~sV~fspd--~  825 (897)
                      ....|...++++.+++||.+||+||+|+.|.||...                    +....+.+|.+.|..|+|+|+  +
T Consensus        64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~  143 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL  143 (942)
T ss_pred             eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence            445678899999999999999999999999999853                    267788899999999999997  9


Q ss_pred             EEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641          826 IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDS  886 (897)
Q Consensus       826 L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~  886 (897)
                      |+|+|.|++|-+||.++.  ..+..+++|.+.|-.+.|.|-|++|+|=|.|++|++|++.+
T Consensus       144 lvS~s~DnsViiwn~~tF--~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d  202 (942)
T KOG0973|consen  144 LVSVSLDNSVIIWNAKTF--ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD  202 (942)
T ss_pred             EEEecccceEEEEccccc--eeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc
Confidence            999999999999999998  68999999999999999999999999999999999999665

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=1.9e-12  Score=148.08  Aligned_cols=123  Identities=16%  Similarity=0.212  Sum_probs=113.3

Q ss_pred             ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc
Q 002641          769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI  844 (897)
Q Consensus       769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~  844 (897)
                      +++|...+..+.+..+-..|+.|+.||+||+||+.  +.++++.||...+.+|.|+|-  ++++||.|+-+++||++.. 
T Consensus        66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-  144 (825)
T KOG0267|consen   66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-  144 (825)
T ss_pred             eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc-
Confidence            67888899999999999999999999999999998  888999999999999999994  8899999999999999944 


Q ss_pred             ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641          845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       845 ~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~  893 (897)
                       -|...+++|...|..+.|+|+|+++++|+.|.+++|||...| ....|+
T Consensus       145 -Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~  193 (825)
T KOG0267|consen  145 -GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK  193 (825)
T ss_pred             -CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccc
Confidence             389999999999999999999999999999999999999888 555665

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.31  E-value=3e-12  Score=141.16  Aligned_cols=129  Identities=20%  Similarity=0.279  Sum_probs=109.6

Q ss_pred             CCCCCceeeeec---------ccccccceeEeeecccccEEEEecCCCCeEEEeCCcceeeccCC-CCcEEEEEEeCC--
Q 002641          757 GLRDINIHMKDI---------MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSE-NGKVLSIACFRD--  824 (897)
Q Consensus       757 ~~~~~~~~i~~~---------l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~~l~~l~gH-~~~V~sV~fspd--  824 (897)
                      +..|..+++|++         ..||...+.-..++.+|..++|+|.|+++++||+.+-......| ...++||.|+||  
T Consensus       233 ~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~  312 (503)
T KOG0282|consen  233 GGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQ  312 (503)
T ss_pred             cCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCC
Confidence            345566777765         44677777777888899999999999999999998333333445 456899999996  


Q ss_pred             -EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          825 -KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       825 -~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                       .+++|+.|+.|+.||++++  +.++.+..|-+.|..+.|.++|++++|.|.|++++||+.+.+
T Consensus       313 n~fl~G~sd~ki~~wDiRs~--kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~  374 (503)
T KOG0282|consen  313 NIFLVGGSDKKIRQWDIRSG--KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP  374 (503)
T ss_pred             cEEEEecCCCcEEEEeccch--HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCC
Confidence             9999999999999999999  578899999999999999999999999999999999999887

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.31  E-value=2.7e-11  Score=151.08  Aligned_cols=109  Identities=21%  Similarity=0.274  Sum_probs=94.6

Q ss_pred             eeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC-C--EEEEEecCCeEEEEeCCCCcceeEEE
Q 002641          776 RKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSILHLIQQ  850 (897)
Q Consensus       776 ~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp-d--~L~Sgs~DgtIrlWd~~~~~~~~i~~  850 (897)
                      ..+.|.+.++.+|++|+.||+|++||+.  +.+..+.+|.+.|++++|+| +  +|+|||.||+|++||++++  ..+..
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~--~~~~~  613 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG--VSIGT  613 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC--cEEEE
Confidence            3445555678899999999999999987  67888899999999999996 3  8999999999999999987  46777


Q ss_pred             eeccCCCeEEEEEc-cCCCEEEEEeCCCcEEEEeCCCc
Q 002641          851 IREHTKAVTGLAIL-QSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       851 l~gH~~~V~slafs-pdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      +..| ..|.++.|+ ++|++|++|+.|++|++||++++
T Consensus       614 ~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~  650 (793)
T PLN00181        614 IKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNP  650 (793)
T ss_pred             EecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence            7755 679999995 56999999999999999999876

>PTZ00420 coronin; Provisional

Probab=99.31  E-value=3.9e-11  Score=141.72  Aligned_cols=115  Identities=11%  Similarity=0.089  Sum_probs=93.7

Q ss_pred             ccccccceeEeeecccccE-EEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCC
Q 002641          769 MKGLRELRKYSPLAFEMVK-VLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS  843 (897)
Q Consensus       769 l~~~~~~~~~~~~s~d~~~-LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~  843 (897)
                      +.+|...+..+.++|++.. ++||+.|++|+|||+.  +....+. |...|.+++|+|+  +|++++.|++|++||++++
T Consensus       121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg  199 (568)
T PTZ00420        121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ  199 (568)
T ss_pred             eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence            3457777888888887765 5799999999999997  4444443 6678999999997  8899999999999999998


Q ss_pred             cceeEEEeeccCCCeEE-----EEEccCCCEEEEEeCCC----cEEEEeCCC
Q 002641          844 ILHLIQQIREHTKAVTG-----LAILQSGEMLYSGSLDK----TARVRSNDS  886 (897)
Q Consensus       844 ~~~~i~~l~gH~~~V~s-----lafspdg~~L~SgS~D~----tIrlWdi~~  886 (897)
                        ..+..+.+|.+.+.+     ..|++++.+|+|+|.|+    +|+|||+++
T Consensus       200 --~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        200 --EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             --cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence              577889999886543     34568899999988775    799999995

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=5.4e-12  Score=128.81  Aligned_cols=120  Identities=18%  Similarity=0.231  Sum_probs=105.0

Q ss_pred             cccccccceeEeeecccccEEEEecCCCCeEEEeCC-----cceeeccCCCCcEEEEEEe-C---CEEEEEecCCeEEEE
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACF-R---DKIFSGHSDGTIKVW  838 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fs-p---d~L~Sgs~DgtIrlW  838 (897)
                      +-+.|.+.+.-......|++||++|.|++|||+.++     +.+.++.||.++|+.|+|- |   ++|+|||.||.|-||
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            445666666666677789999999999999999986     5788999999999999995 5   399999999999999


Q ss_pred             eCCCCcceeEEEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCc
Q 002641          839 TGRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       839 d~~~~~~~~i~~l~gH~~~V~slafspd--g~~L~SgS~D~tIrlWdi~~~  887 (897)
                      .-.++.......+..|...|++++|.|.  |-.|++||.||+|.|.+.++.
T Consensus        86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~  136 (299)
T KOG1332|consen   86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS  136 (299)
T ss_pred             ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence            9998876667888999999999999997  578999999999999988753

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.29  E-value=2.4e-11  Score=133.45  Aligned_cols=118  Identities=14%  Similarity=0.133  Sum_probs=102.8

Q ss_pred             cccccceeEeeecc-cccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCC
Q 002641          770 KGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       770 ~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~  842 (897)
                      .+|...++++.|++ ++..|||||.|++|.|||++   ..++++.+|...|+.|.|+|+   .|+|+|.|+.+.|||+..
T Consensus       269 ~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  269 KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence            45677888888887 56678999999999999987   899999999999999999995   999999999999999974


Q ss_pred             Cc------------ceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc
Q 002641          843 SI------------LHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       843 ~~------------~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~  887 (897)
                      -.            +.++....||+..|+.+.|+|.- -.++|.+.|+.+.||++...
T Consensus       349 ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~  406 (422)
T KOG0264|consen  349 IGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN  406 (422)
T ss_pred             cccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence            21            34567888999999999999985 67889999999999998743

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.28  E-value=2.7e-11  Score=125.09  Aligned_cols=135  Identities=17%  Similarity=0.311  Sum_probs=112.7

Q ss_pred             CCCCceeee--------ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cc----------------------
Q 002641          758 LRDINIHMK--------DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--EL----------------------  805 (897)
Q Consensus       758 ~~~~~~~i~--------~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~----------------------  805 (897)
                      ..|.++.+|        ..+.||++.++++....+.+++++||.|.++++||+.  +.                      
T Consensus        29 aKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~  108 (327)
T KOG0643|consen   29 AKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLI  108 (327)
T ss_pred             cCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEE
Confidence            345555666        3578999999999999999999999999999999986  21                      


Q ss_pred             -------------------------------eeeccCCCCcEEEEEEeC--CEEEEEecCCeEEEEeCCCCcceeEEEee
Q 002641          806 -------------------------------VHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIR  852 (897)
Q Consensus       806 -------------------------------l~~l~gH~~~V~sV~fsp--d~L~Sgs~DgtIrlWd~~~~~~~~i~~l~  852 (897)
                                                     ...+..+.+.++...|.|  +.|++|+.||.|..||++++. ..+..-+
T Consensus       109 l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~-~~v~s~~  187 (327)
T KOG0643|consen  109 LASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK-ELVDSDE  187 (327)
T ss_pred             EEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc-eeeechh
Confidence                                           222223456677888887  399999999999999999985 6778888


Q ss_pred             ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641          853 EHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       853 gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~  893 (897)
                      .|+..|+.+.|++|..++++||.|.+-++||+++- .+.+|.
T Consensus       188 ~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  188 EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT  229 (327)
T ss_pred             hhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence            99999999999999999999999999999999987 656554

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.28  E-value=3.8e-11  Score=124.02  Aligned_cols=119  Identities=18%  Similarity=0.190  Sum_probs=105.3

Q ss_pred             ccccccceeEeeecccccEEEEecCCCCeEEEeC-C-cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc
Q 002641          769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNH-R-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI  844 (897)
Q Consensus       769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~-~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~  844 (897)
                      +.||.+....+.++.+|.+|.|++.|.++.||-. + +.+-++.||++.|||+..+-+  .++|||.|.++++||+.+++
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk   85 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK   85 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence            5678888899999999999999999999999975 4 889999999999999988765  99999999999999999986


Q ss_pred             ---------------------------------------------------ceeEEEeeccCCCeEEEEEccCCCEEEEE
Q 002641          845 ---------------------------------------------------LHLIQQIREHTKAVTGLAILQSGEMLYSG  873 (897)
Q Consensus       845 ---------------------------------------------------~~~i~~l~gH~~~V~slafspdg~~L~Sg  873 (897)
                                                                         -.++..+..+.+.++..-|.|-++.|++|
T Consensus        86 ~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G  165 (327)
T KOG0643|consen   86 QLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG  165 (327)
T ss_pred             EEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe
Confidence                                                               11233444566788999999999999999


Q ss_pred             eCCCcEEEEeCCCc
Q 002641          874 SLDKTARVRSNDSF  887 (897)
Q Consensus       874 S~D~tIrlWdi~~~  887 (897)
                      ..||.|..||+++|
T Consensus       166 he~G~is~~da~~g  179 (327)
T KOG0643|consen  166 HEDGSISIYDARTG  179 (327)
T ss_pred             cCCCcEEEEEcccC
Confidence            99999999999998

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.28  E-value=9.3e-12  Score=137.83  Aligned_cols=118  Identities=17%  Similarity=0.275  Sum_probs=93.6

Q ss_pred             ccccccceeEeeecccccEEEEecCCCCeEEEeCCc--------------------------------------------
Q 002641          769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--------------------------------------------  804 (897)
Q Consensus       769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~--------------------------------------------  804 (897)
                      +.+|...+....+.+.|.+++|||.|-+|++||+..                                            
T Consensus       163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D  242 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD  242 (641)
T ss_pred             ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence            456667777778888888888888888888888640                                            


Q ss_pred             -----------------ceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcceeEEEee-----ccCCCeE
Q 002641          805 -----------------LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIR-----EHTKAVT  859 (897)
Q Consensus       805 -----------------~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~i~~l~-----gH~~~V~  859 (897)
                                       -+..-+||...++|.+|+|+   .|+|||.||++|+||+...+ ...+.|+     |.+-.|+
T Consensus       243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k-~q~qVik~k~~~g~Rv~~t  321 (641)
T KOG0772|consen  243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK-SQLQVIKTKPAGGKRVPVT  321 (641)
T ss_pred             cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch-hheeEEeeccCCCcccCce
Confidence                             12223479999999999996   99999999999999999764 3344444     2334789


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          860 GLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       860 slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      +++|+|||+.|+.|+.||+|.+||.++.
T Consensus       322 sC~~nrdg~~iAagc~DGSIQ~W~~~~~  349 (641)
T KOG0772|consen  322 SCAWNRDGKLIAAGCLDGSIQIWDKGSR  349 (641)
T ss_pred             eeecCCCcchhhhcccCCceeeeecCCc
Confidence            9999999999999999999999997554

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=9.2e-12  Score=127.13  Aligned_cols=125  Identities=18%  Similarity=0.132  Sum_probs=107.0

Q ss_pred             eeeeecccccccceeEeeecc--cccEEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeCC----EEEEEecC
Q 002641          763 IHMKDIMKGLRELRKYSPLAF--EMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD----KIFSGHSD  832 (897)
Q Consensus       763 ~~i~~~l~~~~~~~~~~~~s~--d~~~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fspd----~L~Sgs~D  832 (897)
                      ...-..++||.+.++-..+..  .|..|||+|+||.|.||.-.    +..+.+..|.+.|.+|+|.|.    .|+.+++|
T Consensus        46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD  125 (299)
T KOG1332|consen   46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD  125 (299)
T ss_pred             ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC
Confidence            355567889998888777655  89999999999999999975    677788899999999999995    89999999


Q ss_pred             CeEEEEeCCCC-cceeEEEeeccCCCeEEEEEccC---C-----------CEEEEEeCCCcEEEEeCCCc
Q 002641          833 GTIKVWTGRGS-ILHLIQQIREHTKAVTGLAILQS---G-----------EMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       833 gtIrlWd~~~~-~~~~i~~l~gH~~~V~slafspd---g-----------~~L~SgS~D~tIrlWdi~~~  887 (897)
                      |.|.|.+.+.. ..........|.-.|+++.|.|.   |           +.|+||+.|..|+||+..++
T Consensus       126 G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~  195 (299)
T KOG1332|consen  126 GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD  195 (299)
T ss_pred             CcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence            99999999865 22334567789999999999986   5           67999999999999999886

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.27  E-value=1.7e-11  Score=143.22  Aligned_cols=115  Identities=19%  Similarity=0.275  Sum_probs=94.5

Q ss_pred             ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC-C--EEEEEecCCeEEEEeCCCC
Q 002641          769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGS  843 (897)
Q Consensus       769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp-d--~L~Sgs~DgtIrlWd~~~~  843 (897)
                      +.||..-+--+.++ ..++|+|+|.|+|||||++.  +++.+| .|...|+||+|+| |  +|+|||-||.||||++...
T Consensus       365 f~GHt~DILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~  442 (712)
T KOG0283|consen  365 FKGHTADILDLSWS-KNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK  442 (712)
T ss_pred             hhccchhheecccc-cCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCCCcEeecccccceEEeecCcC
Confidence            45554333222222 25689999999999999998  888887 7999999999999 2  9999999999999999987


Q ss_pred             cceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCcc
Q 002641          844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFT  888 (897)
Q Consensus       844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~  888 (897)
                      +   +.....-..-|++++|.|||+..+.|+.+|.+++|++.+..
T Consensus       443 ~---Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk  484 (712)
T KOG0283|consen  443 K---VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK  484 (712)
T ss_pred             e---eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCe
Confidence            3   44444445889999999999999999999999999998763

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.27  E-value=7.1e-11  Score=124.20  Aligned_cols=123  Identities=24%  Similarity=0.333  Sum_probs=108.9

Q ss_pred             cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCC
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS  843 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~  843 (897)
                      .+++|...+....+++++.++++++.||.+++|++.  +....+.+|...+.++.|+|+  .+++++.||.|++||+.++
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~   83 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG   83 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence            345778888899999999999999999999999987  577788899999999999996  8999999999999999986


Q ss_pred             cceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641          844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l  892 (897)
                        ..+..+.+|...|.++.|+|+++++++++.|+.+++||+.++ ....+
T Consensus        84 --~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  131 (289)
T cd00200          84 --ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL  131 (289)
T ss_pred             --cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe
Confidence              467788899999999999999999999998999999999866 44444

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.27  E-value=9.3e-12  Score=137.83  Aligned_cols=119  Identities=24%  Similarity=0.296  Sum_probs=95.4

Q ss_pred             ccccc-cceeEeeecccccEEEEecCCCCeEEEeCC---cceeecc-----CCCCcEEEEEEeCC--EEEEEecCCeEEE
Q 002641          769 MKGLR-ELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDS-----SENGKVLSIACFRD--KIFSGHSDGTIKV  837 (897)
Q Consensus       769 l~~~~-~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~-----gH~~~V~sV~fspd--~L~Sgs~DgtIrl  837 (897)
                      .+||. .+..-+||+.....++|+|+||++|+||+.   ..+.+++     +..-.|++.+|+||  .||+|..||+|.+
T Consensus       264 TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~  343 (641)
T KOG0772|consen  264 TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQI  343 (641)
T ss_pred             cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceee
Confidence            45665 444557777788899999999999999987   3333333     23457899999998  9999999999999


Q ss_pred             EeCCCCccee-EEEeeccCC--CeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          838 WTGRGSILHL-IQQIREHTK--AVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       838 Wd~~~~~~~~-i~~l~gH~~--~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      |+.......+ ...-+.|..  .|+|++||+||++|+|-|.|.++++||++.-
T Consensus       344 W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  344 WDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             eecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence            9986542222 344567887  8999999999999999999999999999975

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.26  E-value=8.1e-12  Score=137.61  Aligned_cols=112  Identities=24%  Similarity=0.355  Sum_probs=99.6

Q ss_pred             cceeEeeecccccEEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCccee
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL  847 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~  847 (897)
                      ...+.+.+.+||+.|++|+.-.++.|||+.    .....+....-..++++.+||  ..|+|..||.|.|||+++.  ..
T Consensus       466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq--~~  543 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ--TL  543 (705)
T ss_pred             cceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc--ee
Confidence            456677788899999999999999999986    333444444567889999998  8999999999999999998  58


Q ss_pred             EEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       848 i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ++.|+||++.+.|+.+++||..|-+|+.|.+||-||++++
T Consensus       544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlreg  583 (705)
T KOG0639|consen  544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREG  583 (705)
T ss_pred             eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhh
Confidence            9999999999999999999999999999999999999998

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.26  E-value=6.4e-12  Score=141.28  Aligned_cols=112  Identities=19%  Similarity=0.244  Sum_probs=100.1

Q ss_pred             cceeEeeecccccEEEEecCCCCeEEEeCC---------cceeeccCCCCcEEEEEEeC---CEEEEEecCCeEEEEeCC
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR---------ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGR  841 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---------~~l~~l~gH~~~V~sV~fsp---d~L~Sgs~DgtIrlWd~~  841 (897)
                      ....+-|-..|..+||.++.||.|++|.+.         .....+++|...|+++.|+|   |.|++++.|-||++||+.
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            344455556688999999999999999974         46677889999999999999   699999999999999999


Q ss_pred             CCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          842 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       842 ~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      +.  .....|.||++.|..++|||+|+.+++.+.||+|++|+.+++
T Consensus       709 ~~--~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~  752 (1012)
T KOG1445|consen  709 NA--KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR  752 (1012)
T ss_pred             hh--hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence            98  456789999999999999999999999999999999999887

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.26  E-value=6.4e-12  Score=143.86  Aligned_cols=129  Identities=22%  Similarity=0.261  Sum_probs=115.4

Q ss_pred             CCCCCceeeeec--------ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--
Q 002641          757 GLRDINIHMKDI--------MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--  824 (897)
Q Consensus       757 ~~~~~~~~i~~~--------l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--  824 (897)
                      +..+.++.+||.        +.||......+.|.|.+.+.++||.|+-+++||.+  .+.+.+.+|...|.++.|+|+  
T Consensus        88 gsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr  167 (825)
T KOG0267|consen   88 GSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR  167 (825)
T ss_pred             cccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc
Confidence            445556677764        55667666777789999999999999999999998  899999999999999999997  


Q ss_pred             EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       825 ~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ++++|+.|.++++||...+  .....|.+|.+.|.++.|+|..-.+++||.|+++++||+++.
T Consensus       168 ~v~~g~ed~tvki~d~~ag--k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf  228 (825)
T KOG0267|consen  168 WVASGGEDNTVKIWDLTAG--KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF  228 (825)
T ss_pred             eeeccCCcceeeeeccccc--ccccccccccccccccccCchhhhhccCCCCceeeeecccee
Confidence            9999999999999999988  578899999999999999999999999999999999999964

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.24  E-value=4.1e-12  Score=97.42  Aligned_cols=39  Identities=33%  Similarity=0.745  Sum_probs=31.4

Q ss_pred             ccccccCCCCceecCCCcccchHHHHHHHhcCC---CCCCCC
Q 002641          166 CPITTHIFDDPVTLETGQTYERRAIQEWIERGN---SSCPIT  204 (897)
Q Consensus       166 CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~---~~CP~C  204 (897)
                      ||||+++|+|||+++|||+||+.||.+||+...   ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999999999999999999999998532   469987

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=1.9e-11  Score=134.04  Aligned_cols=133  Identities=24%  Similarity=0.334  Sum_probs=103.8

Q ss_pred             CCCCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHHHHhCCCCCCCC
Q 002641          159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDLS  238 (897)
Q Consensus       159 ~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~~~~~~~~~~~~  238 (897)
                      ...+++.||||++.|.+|++++|||+||+.|+..+|. ....||.||. ... .+ .+|..+.++++.++..........
T Consensus         9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~-~~n~~l~~~~~~~~~~~~~~~~~~   84 (386)
T KOG2177|consen    9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NL-RPNVLLANLVERLRQLRLSRPLGS   84 (386)
T ss_pred             hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-cc-CccHHHHHHHHHHHhcCCcccccc
Confidence            5678999999999999999999999999999999998 5668999996 333 66 599999999999987654432111


Q ss_pred             CCCCCccCcCCCCCCccccccccccchHHHHHHHHHhhcccccccccccceEeEeccccccccccccccccchHHHHHHH
Q 002641          239 HSEPMSKSIVPSNSPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGF  318 (897)
Q Consensus       239 ~~~~~~~~~~~s~s~~~vc~~h~~~~~l~~L~~~i~~L~~~edL~~ce~~vc~vc~~~~~~~~~h~~h~~l~~~~a~~~~  318 (897)
                      .              ...|..|.     +++     .++|.++    +...|..|..    ...|..|.+.+.+++.+.+
T Consensus        85 ~--------------~~~c~~~~-----~~~-----~~~c~~~----~~~~c~~c~~----~~~h~~h~~~~~~~~~~~~  132 (386)
T KOG2177|consen   85 K--------------EELCEKHG-----EEL-----KLFCEED----EKLLCVLCRE----SGEHRGHPVLPLEEAAQEY  132 (386)
T ss_pred             c--------------chhhhhcC-----Ccc-----eEEeccc----ccccCCCCCC----cccccCCccccHHHHHHHH
Confidence            1              12677777     332     5777777    7788888874    6789999999999999998


Q ss_pred             HHHHhccCC
Q 002641          319 VEILFNSVD  327 (897)
Q Consensus       319 ke~L~~sl~  327 (897)
                      ++.+...+.
T Consensus       133 ~~~~~~~~~  141 (386)
T KOG2177|consen  133 REKLLAELE  141 (386)
T ss_pred             HHHHHHHHH
Confidence            854444433

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.22  E-value=1.4e-11  Score=131.66  Aligned_cols=130  Identities=18%  Similarity=0.212  Sum_probs=100.6

Q ss_pred             CCCCCCceeeeecc--------cccccceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccC---------------
Q 002641          756 QGLRDINIHMKDIM--------KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSS---------------  811 (897)
Q Consensus       756 ~~~~~~~~~i~~~l--------~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~g---------------  811 (897)
                      .+..|..+.+|+..        +.|.+++.-+.+..  ..++++|+|++|+.|.+. ..++++.+               
T Consensus        84 SGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~  161 (433)
T KOG0268|consen   84 SGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSV  161 (433)
T ss_pred             ccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccccccccc
Confidence            45567778899753        34455555444444  778999999999999988 66555543               


Q ss_pred             ------------------------CCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCc--------------------
Q 002641          812 ------------------------ENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI--------------------  844 (897)
Q Consensus       812 ------------------------H~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~--------------------  844 (897)
                                              ....|.++.|+|.   .|++|++|++|-+||++++.                    
T Consensus       162 FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea  241 (433)
T KOG0268|consen  162 FATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA  241 (433)
T ss_pred             ccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccc
Confidence                                    1124567788883   89999999999999998764                    


Q ss_pred             --------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          845 --------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       845 --------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                                          ..++..+++|.++|.+|+|||.|+.|+|||.|++||||.++.+
T Consensus       242 fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  242 FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence                                2344566789999999999999999999999999999999876

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.22  E-value=8.8e-11  Score=123.87  Aligned_cols=131  Identities=20%  Similarity=0.211  Sum_probs=106.4

Q ss_pred             CCCCCceeeee--------cccccccceeEeeeccccc--EEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC
Q 002641          757 GLRDINIHMKD--------IMKGLRELRKYSPLAFEMV--KVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD  824 (897)
Q Consensus       757 ~~~~~~~~i~~--------~l~~~~~~~~~~~~s~d~~--~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd  824 (897)
                      +..|.++.++|        .+-.|.+.++...|.+...  .|+||+.||.|.+|+.+  .++.++++|.+.|+.++.+|.
T Consensus        59 GssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS  138 (362)
T KOG0294|consen   59 GSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS  138 (362)
T ss_pred             cCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCC
Confidence            45566666664        3445677777777776544  89999999999999998  899999999999999999995


Q ss_pred             --EEEEEecCCeEEEEeCCCCc----------------------------------------------------------
Q 002641          825 --KIFSGHSDGTIKVWTGRGSI----------------------------------------------------------  844 (897)
Q Consensus       825 --~L~Sgs~DgtIrlWd~~~~~----------------------------------------------------------  844 (897)
                        +-+|.|.|+++|+||+-.++                                                          
T Consensus       139 ~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~  218 (362)
T KOG0294|consen  139 GKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLD  218 (362)
T ss_pred             CceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecC
Confidence              77788889999999877654                                                          


Q ss_pred             --------------------ceeEEEeeccCCCeEEEEE--ccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          845 --------------------LHLIQQIREHTKAVTGLAI--LQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       845 --------------------~~~i~~l~gH~~~V~slaf--spdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                                          ..+...|.+|.+.|-++.+  .|++.+|+|+|.||.|+|||++..
T Consensus       219 ~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  219 GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence                                3455677899999999885  467899999999999999999876

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.21  E-value=3.9e-11  Score=128.92  Aligned_cols=127  Identities=17%  Similarity=0.148  Sum_probs=100.5

Q ss_pred             cccccceeEeeecc-cccEEEEecCCCCeEEEeCC-----cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeC
Q 002641          770 KGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTG  840 (897)
Q Consensus       770 ~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~  840 (897)
                      .+|+..-.-..+++ ....++||..-+.|++|...     .-...|.+|+..|-.++|||.   .|+|||.||+|||||+
T Consensus       208 ~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi  287 (440)
T KOG0302|consen  208 NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI  287 (440)
T ss_pred             cccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence            34444444444444 45568899888999999865     345567889999999999995   9999999999999999


Q ss_pred             CCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc----cceeeeccc
Q 002641          841 RGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF----TYAIFIQVV  896 (897)
Q Consensus       841 ~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~----~l~~l~~~~  896 (897)
                      +.+..+..-..+.|.+.|+-+.|+..-.+|+||+.||+++|||+++-    .+.+|+.+.
T Consensus       288 Rs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk  347 (440)
T KOG0302|consen  288 RSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK  347 (440)
T ss_pred             cCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc
Confidence            98732333344899999999999988779999999999999999874    455777654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.21  E-value=7.4e-11  Score=134.02  Aligned_cols=115  Identities=19%  Similarity=0.246  Sum_probs=106.2

Q ss_pred             ccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcce
Q 002641          771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILH  846 (897)
Q Consensus       771 ~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~  846 (897)
                      |++..+...+..+.|..|++|+..+-+++||.+  ..+-.++||+..|.++..++|  .++|+|+|||||+||+...  +
T Consensus       169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ--r  246 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ--R  246 (735)
T ss_pred             CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc--c
Confidence            667777788888889999999999999999987  566677899999999999997  9999999999999999988  6


Q ss_pred             eEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       847 ~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      |+.++..|+..|+++..+|+=.++++|+.||.|..=|+++.
T Consensus       247 Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  247 CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            99999999999999999999999999999999999999985

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.21  E-value=3.2e-10  Score=119.22  Aligned_cols=122  Identities=24%  Similarity=0.269  Sum_probs=103.7

Q ss_pred             cccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcc
Q 002641          770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL  845 (897)
Q Consensus       770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~  845 (897)
                      .+|........+.+++.++++++.|+.|++||+.  +....+.+|...|.++.|+++  ++++++.||.|++||+.++  
T Consensus        48 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--  125 (289)
T cd00200          48 KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG--  125 (289)
T ss_pred             ecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc--
Confidence            3444555566677788899999999999999997  578888899999999999995  7777777999999999976  


Q ss_pred             eeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641          846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       846 ~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~  893 (897)
                      .....+.+|...|++++|+|++.++++++.|+.|++||++++ ....+.
T Consensus       126 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~  174 (289)
T cd00200         126 KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT  174 (289)
T ss_pred             EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe
Confidence            567888899999999999999999999988999999999876 444443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.20  E-value=1.4e-10  Score=121.81  Aligned_cols=131  Identities=20%  Similarity=0.198  Sum_probs=107.5

Q ss_pred             CCCCCceeeeeccc----------ccccceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEeCC-
Q 002641          757 GLRDINIHMKDIMK----------GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD-  824 (897)
Q Consensus       757 ~~~~~~~~i~~~l~----------~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd-  824 (897)
                      +..|.++++|++..          .|...+-.+.++.||..+++|+.|+.+++||+. .....+..|.++|.++.|-+. 
T Consensus        46 ~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~  125 (347)
T KOG0647|consen   46 GSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGM  125 (347)
T ss_pred             cccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCC
Confidence            44667778887654          345667777888899999999999999999998 677778899999999999874 


Q ss_pred             ---EEEEEecCCeEEEEeCCCCc---------------------------------------------------------
Q 002641          825 ---KIFSGHSDGTIKVWTGRGSI---------------------------------------------------------  844 (897)
Q Consensus       825 ---~L~Sgs~DgtIrlWd~~~~~---------------------------------------------------------  844 (897)
                         .|+|||.|+|||.||.+...                                                         
T Consensus       126 ~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va  205 (347)
T KOG0647|consen  126 NYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVA  205 (347)
T ss_pred             CcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEE
Confidence               78999999999999999655                                                         


Q ss_pred             ------------------------c--eeEEEeeccCC---------CeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          845 ------------------------L--HLIQQIREHTK---------AVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       845 ------------------------~--~~i~~l~gH~~---------~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                                              .  ..-.+|+.|+.         +|++++|+|....|+++|.||++.+||-...
T Consensus       206 ~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar  283 (347)
T KOG0647|consen  206 CFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR  283 (347)
T ss_pred             EEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh
Confidence                                    0  11235667773         5789999999999999999999999997655

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.19  E-value=8e-11  Score=123.55  Aligned_cols=119  Identities=14%  Similarity=0.233  Sum_probs=91.7

Q ss_pred             cceeEeeecccccEEEEecCCCCeEEEeCC--c---ceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcce
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--E---LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILH  846 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~---~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~  846 (897)
                      ..+..+.+-|.|.+++.|..-.++++||+.  +   .-..-.+|++.|++|.|++.  +.++||.||.||+||--.+  +
T Consensus       217 ~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~--r  294 (430)
T KOG0640|consen  217 EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN--R  294 (430)
T ss_pred             ceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccH--H
Confidence            334445555566666666655666666654  1   11233469999999999986  9999999999999998887  6


Q ss_pred             eEEEee-ccCC-CeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeec
Q 002641          847 LIQQIR-EHTK-AVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ  894 (897)
Q Consensus       847 ~i~~l~-gH~~-~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~  894 (897)
                      |+.++. .|.+ .|++..|.-+|++++|.+.|.++++|.+.+| .+.++..
T Consensus       295 Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG  345 (430)
T KOG0640|consen  295 CVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG  345 (430)
T ss_pred             HHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEec
Confidence            888875 4665 6899999999999999999999999999999 7776654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.18  E-value=5e-11  Score=133.80  Aligned_cols=126  Identities=22%  Similarity=0.271  Sum_probs=105.1

Q ss_pred             cccccccceeEeeecccccEEEEecCCCCeEEEeCC----------cceeeccCCCCcEEEEEEeCC--EEEEEecCCeE
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTI  835 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~----------~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtI  835 (897)
                      .+..|....+...+.+..-.|++++.||++++|++.          +.+.+|.+|.++|.||++.++  .++|||-||+|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            455556666666677777789999999999999982          688999999999999999986  99999999999


Q ss_pred             EEEeCCCCc--------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCccceeee
Q 002641          836 KVWTGRGSI--------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIFI  893 (897)
Q Consensus       836 rlWd~~~~~--------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l~~l~  893 (897)
                      +.|++....        ......+.||++.|+.+++|+....|+++|.|||+|+|+.......+|.
T Consensus       369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~  434 (577)
T KOG0642|consen  369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFG  434 (577)
T ss_pred             eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccC
Confidence            999665221        1345678999999999999999999999999999999998877434443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.18  E-value=6.9e-11  Score=125.16  Aligned_cols=101  Identities=12%  Similarity=0.162  Sum_probs=91.9

Q ss_pred             ccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcceeEEEee---ccCC
Q 002641          785 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIR---EHTK  856 (897)
Q Consensus       785 ~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~i~~l~---gH~~  856 (897)
                      .-++|.||.-|.|+|.|+.  +....+.||.+.|..+.|.|+   +++|||.|.+||+|++++.  .++..|.   ||.+
T Consensus       105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~--~Cv~VfGG~egHrd  182 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--VCVAVFGGVEGHRD  182 (385)
T ss_pred             CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC--eEEEEecccccccC
Confidence            3478888899999999987  888899999999999999985   9999999999999999998  5777664   6999


Q ss_pred             CeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          857 AVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       857 ~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      .|.++.|+++|.+|+|+|.|.++++|++...
T Consensus       183 eVLSvD~~~~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  183 EVLSVDFSLDGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             cEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence            9999999999999999999999999999843

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.17  E-value=1.6e-10  Score=121.44  Aligned_cols=134  Identities=19%  Similarity=0.250  Sum_probs=106.7

Q ss_pred             CCCCceeeeec--------ccccccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC-E
Q 002641          758 LRDINIHMKDI--------MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD-K  825 (897)
Q Consensus       758 ~~~~~~~i~~~--------l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd-~  825 (897)
                      ..|.+..+||+        +.||....+-+.--|.-++++++|.|.+.++||++   ..+.+|+||+..|+++.|+.| .
T Consensus       291 SWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~  370 (481)
T KOG0300|consen  291 SWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR  370 (481)
T ss_pred             eccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc
Confidence            34555566654        55555443333334456789999999999999998   788999999999999999986 9


Q ss_pred             EEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCccceeee
Q 002641          826 IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIFI  893 (897)
Q Consensus       826 L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l~~l~  893 (897)
                      ++|||.|.|||+||+++.. .++.+++ ...+++.++++-.+..|+---.++.||+||+.+..+..++
T Consensus       371 vVSgSDDrTvKvWdLrNMR-splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP  436 (481)
T KOG0300|consen  371 VVSGSDDRTVKVWDLRNMR-SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP  436 (481)
T ss_pred             eeecCCCceEEEeeecccc-Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCC
Confidence            9999999999999999875 4566666 4567899999988888888888999999999887665554

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.17  E-value=3.2e-11  Score=139.28  Aligned_cols=164  Identities=13%  Similarity=0.107  Sum_probs=122.8

Q ss_pred             HHHHhhhhhhcccCCCcchhhhhhhccccccCCCCCCCCCc--eeeeecccccccceeEeeecccccEEEEecCCCCeEE
Q 002641          722 VSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDIN--IHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADF  799 (897)
Q Consensus       722 s~Lls~lv~~L~~~~~leervLA~lsl~s~~~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIkl  799 (897)
                      ...++.-.+.++..++...-+.|.-++..+...+....+..  .+......-+.....+.|...+.++||+++..|.|.+
T Consensus        35 ~~~~k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~v  114 (839)
T KOG0269|consen   35 NCKLKAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISV  114 (839)
T ss_pred             eeecccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEE
Confidence            33345555666666666666666655554444433332222  2212222222334455666668889999999999999


Q ss_pred             EeCC-----cceeeccCCCCcEEEEEEeC---CEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccC-CCEE
Q 002641          800 WNHR-----ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-GEML  870 (897)
Q Consensus       800 Wd~~-----~~l~~l~gH~~~V~sV~fsp---d~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspd-g~~L  870 (897)
                      ||+.     +.+..|..|...|.++.|++   ++|+|||.||+||+||++..  ....++.+....|..|+|+|. +++|
T Consensus       115 Wdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~--~S~~t~~~nSESiRDV~fsp~~~~~F  192 (839)
T KOG0269|consen  115 WDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK--KSKSTFRSNSESIRDVKFSPGYGNKF  192 (839)
T ss_pred             EecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc--cccccccccchhhhceeeccCCCceE
Confidence            9987     57778999999999999996   59999999999999999987  467889999999999999996 7899


Q ss_pred             EEEeCCCcEEEEeCCCc
Q 002641          871 YSGSLDKTARVRSNDSF  887 (897)
Q Consensus       871 ~SgS~D~tIrlWdi~~~  887 (897)
                      +++...|.+++||++..
T Consensus       193 ~s~~dsG~lqlWDlRqp  209 (839)
T KOG0269|consen  193 ASIHDSGYLQLWDLRQP  209 (839)
T ss_pred             EEecCCceEEEeeccCc
Confidence            99999999999999976

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=9.7e-11  Score=133.81  Aligned_cols=121  Identities=21%  Similarity=0.240  Sum_probs=107.1

Q ss_pred             ccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccC-CCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCcceeEE
Q 002641          773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSS-ENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQ  849 (897)
Q Consensus       773 ~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~g-H~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i~  849 (897)
                      ...+..+.++++|.+|+.|..+|.|.|||..  +.+..+.+ |.+.|.+++|+...+.+|+.||.|..||++..+ ....
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~-~~~~  295 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQ-HVVS  295 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecch-hhhh
Confidence            5677888889999999999999999999987  77788888 999999999998899999999999999999875 3344


Q ss_pred             EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeec
Q 002641          850 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ  894 (897)
Q Consensus       850 ~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~  894 (897)
                      ++.+|+..|..++|++||++++||+.|..+.|||..+. .+.+|.+
T Consensus       296 ~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~  341 (484)
T KOG0305|consen  296 TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE  341 (484)
T ss_pred             hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec
Confidence            69999999999999999999999999999999999654 5444443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.17  E-value=2.9e-10  Score=114.62  Aligned_cols=105  Identities=19%  Similarity=0.322  Sum_probs=92.2

Q ss_pred             ecccccEEEEecCCCCeEEEeCC--cceeeccC--C-----CCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEE
Q 002641          781 LAFEMVKVLSNGHDSSADFWNHR--ELVHVDSS--E-----NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ  849 (897)
Q Consensus       781 ~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~g--H-----~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~  849 (897)
                      ++.++-.++|||.|++|++||++  .++.++..  |     .+.|.+|+..|.  +|+||..|...-+||++.+  +.++
T Consensus       190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~--r~iq  267 (350)
T KOG0641|consen  190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG--RMIQ  267 (350)
T ss_pred             EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC--ceee
Confidence            34467789999999999999987  44444432  2     367999999996  9999999999999999998  6899


Q ss_pred             EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          850 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       850 ~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      .|..|+..|.|+.|+|...++++||.|..|++-|+.+.
T Consensus       268 ~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  268 RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             eeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence            99999999999999999999999999999999999876

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.15  E-value=2e-10  Score=137.55  Aligned_cols=120  Identities=18%  Similarity=0.263  Sum_probs=104.0

Q ss_pred             eeEeeecccccEEEEec--CCCCeEEEeCC--------------cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEE
Q 002641          776 RKYSPLAFEMVKVLSNG--HDSSADFWNHR--------------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKV  837 (897)
Q Consensus       776 ~~~~~~s~d~~~LaSgs--~DgtIklWd~~--------------~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrl  837 (897)
                      +..+...++|..++||+  .|+.+.+|+..              +.+.+...|.+.|.||.|+||  +||+||.|+.|-+
T Consensus        16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~i   95 (942)
T KOG0973|consen   16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMI   95 (942)
T ss_pred             EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEE
Confidence            55677889999999999  99999999965              244555679999999999998  9999999999999


Q ss_pred             EeCCC----C------------cceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641          838 WTGRG----S------------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV  895 (897)
Q Consensus       838 Wd~~~----~------------~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~  895 (897)
                      |....    .            ..+++..+.+|.+.|..++|+|++.+|+|+|.|++|.+||.++. .+.++..+
T Consensus        96 W~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H  170 (942)
T KOG0973|consen   96 WERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH  170 (942)
T ss_pred             eeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc
Confidence            99873    0            04577889999999999999999999999999999999999998 66666543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.14  E-value=1.2e-10  Score=126.33  Aligned_cols=112  Identities=20%  Similarity=0.213  Sum_probs=96.0

Q ss_pred             cceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEE--EEEEeC---CEEEEEecCCeEEEEeCCCCcce
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVL--SIACFR---DKIFSGHSDGTIKVWTGRGSILH  846 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~--sV~fsp---d~L~Sgs~DgtIrlWd~~~~~~~  846 (897)
                      ..+.....+.++++++..=.+..+.+||+.  ..++.+.||+..-+  .-+|-.   ++++|||.|+.|++|+..++  .
T Consensus       396 ~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg--k  473 (519)
T KOG0293|consen  396 QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG--K  473 (519)
T ss_pred             CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC--c
Confidence            445566678899999999999999999998  78889999965433  335543   29999999999999999998  5


Q ss_pred             eEEEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCc
Q 002641          847 LIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       847 ~i~~l~gH~~~V~slafspd-g~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ++.++.||.+.|+||+|+|. .+.++|||.|||||||-....
T Consensus       474 ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  474 LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            89999999999999999996 489999999999999987643

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.14  E-value=2.1e-10  Score=132.12  Aligned_cols=117  Identities=16%  Similarity=0.200  Sum_probs=104.7

Q ss_pred             cceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEE
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ  849 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~  849 (897)
                      ..+.+...+++.-.+|.|..||.|++|+..  ...-++.||+.+|+++.|+..  .|+|||.|+.|-+||+-..  .-..
T Consensus        66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E--~Gl~  143 (888)
T KOG0306|consen   66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE--EGLF  143 (888)
T ss_pred             ceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccc--eeeE
Confidence            366777777888899999999999999987  788899999999999999974  9999999999999999876  4577


Q ss_pred             EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641          850 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       850 ~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l  892 (897)
                      .++||+..|+..-|..+.++++|.|.|+.|++||+.+. |..+.
T Consensus       144 rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Th  187 (888)
T KOG0306|consen  144 RLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETH  187 (888)
T ss_pred             EeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEE
Confidence            89999999999999877899999999999999999998 76554

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.13  E-value=1.1e-10  Score=128.21  Aligned_cols=116  Identities=22%  Similarity=0.329  Sum_probs=104.4

Q ss_pred             cccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC--CEEEEEecCCeEEEEeCCCCcc
Q 002641          770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSIL  845 (897)
Q Consensus       770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp--d~L~Sgs~DgtIrlWd~~~~~~  845 (897)
                      ++|...+..+.+++||+|||+|+.|..|.||++.  +.++++.+|.+.|.+++|-.  +.++|+|.|++|++|++...  
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~--  276 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL--  276 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh--
Confidence            3777888889999999999999999999999998  88889999999999999985  49999999999999999876  


Q ss_pred             eeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       846 ~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ..+.++.||.+.|..+....-++.+-.|+.|+|+++|++...
T Consensus       277 s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee  318 (479)
T KOG0299|consen  277 SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE  318 (479)
T ss_pred             HHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc
Confidence            478899999999999998877777777779999999999554

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.13  E-value=4.7e-11  Score=133.68  Aligned_cols=72  Identities=22%  Similarity=0.522  Sum_probs=65.6

Q ss_pred             CCCCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHHHHhCC
Q 002641          159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP  232 (897)
Q Consensus       159 ~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~~~~~~  232 (897)
                      .+...+.|+||.++|.+||+++|||+||..||..|+.. ...||.|+..+....+ ++|+.|.++|+.|+..++
T Consensus        22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~L-r~N~~L~~iVe~~~~~R~   93 (397)
T TIGR00599        22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKL-RSNWLVSEIVESFKNLRP   93 (397)
T ss_pred             ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccC-ccchHHHHHHHHHHHhhH
Confidence            68889999999999999999999999999999999985 4479999999988788 699999999999987654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=6.9e-10  Score=117.55  Aligned_cols=113  Identities=17%  Similarity=0.191  Sum_probs=101.2

Q ss_pred             ccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC--CEEEEEec--CCeEEEEeCCCCcce
Q 002641          773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR--DKIFSGHS--DGTIKVWTGRGSILH  846 (897)
Q Consensus       773 ~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp--d~L~Sgs~--DgtIrlWd~~~~~~~  846 (897)
                      ...+....++.+|..+++++.|.+++|||..  +.++++..++..|..++|-.  +.++.++.  |.+||.-++.+.  +
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN--k   91 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN--K   91 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC--c
Confidence            4567788899999999999999999999987  78888888888899999864  35666665  999999999998  6


Q ss_pred             eEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       847 ~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      .++.|.||++.|++++.+|-++.++|+|.|++||+||++..
T Consensus        92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~  132 (311)
T KOG1446|consen   92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK  132 (311)
T ss_pred             eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC
Confidence            99999999999999999999999999999999999999966

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.12  E-value=4.4e-10  Score=118.55  Aligned_cols=110  Identities=16%  Similarity=0.177  Sum_probs=94.8

Q ss_pred             ceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEeCC-EEEEEecCCeEEEEeCCCCcceeEEEee
Q 002641          775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR  852 (897)
Q Consensus       775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd-~L~Sgs~DgtIrlWd~~~~~~~~i~~l~  852 (897)
                      .+..+.+++.+..|+.+||||++++||+. ..+...-.|.+++.+.+|.++ .+++|+.||.||++|+.++.   ...+.
T Consensus        15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~---~~~ig   91 (323)
T KOG1036|consen   15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGN---EDQIG   91 (323)
T ss_pred             ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCc---ceeec
Confidence            34445566777888888899999999998 544455578999999999987 99999999999999999984   56677


Q ss_pred             ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          853 EHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       853 gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      .|.++|.|+.+++....+++||+|++|++||.++.
T Consensus        92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~  126 (323)
T KOG1036|consen   92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK  126 (323)
T ss_pred             cCCCceEEEEeeccCCeEEEcccCccEEEEecccc
Confidence            89999999999998889999999999999999954

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.11  E-value=2e-10  Score=125.80  Aligned_cols=117  Identities=17%  Similarity=0.194  Sum_probs=95.9

Q ss_pred             ccccceeEeeecc-cccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCc
Q 002641          771 GLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI  844 (897)
Q Consensus       771 ~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~  844 (897)
                      +|...+-...+.. ..+.|||||.|+||++||+.  ++..++.-|.+.|.++.|+|.   .|++||.|++|++.|.+...
T Consensus       241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~  320 (463)
T KOG0270|consen  241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS  320 (463)
T ss_pred             cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc
Confidence            4444443433333 35679999999999999997  888888889999999999984   99999999999999988321


Q ss_pred             ------------------------------------------ceeEEEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEE
Q 002641          845 ------------------------------------------LHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARV  881 (897)
Q Consensus       845 ------------------------------------------~~~i~~l~gH~~~V~slafspd-g~~L~SgS~D~tIrl  881 (897)
                                                                .+++.+++.|.+.|+++.+++. ...++++|.|+++++
T Consensus       321 ~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vkl  400 (463)
T KOG0270|consen  321 NSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKL  400 (463)
T ss_pred             ccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEE
Confidence                                                      4678889999999999999876 478999999999999


Q ss_pred             EeCCCc
Q 002641          882 RSNDSF  887 (897)
Q Consensus       882 Wdi~~~  887 (897)
                      |++...
T Consensus       401 w~~~~~  406 (463)
T KOG0270|consen  401 WKFDVD  406 (463)
T ss_pred             EeecCC
Confidence            998654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.10  E-value=3.6e-11  Score=139.25  Aligned_cols=112  Identities=21%  Similarity=0.283  Sum_probs=103.8

Q ss_pred             cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCC
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS  843 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~  843 (897)
                      -+.||...+.+..+...|.+|++|++|..+|||.+.  .++....||.+.++.++.+.+  +++++|.|..||+|.+.++
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence            356788889999999999999999999999999987  899999999999999999875  9999999999999999998


Q ss_pred             cceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641          844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSND  885 (897)
Q Consensus       844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~  885 (897)
                        .++..+.||+++|++++|+|-.    +.+.|||+++||.+
T Consensus       265 --~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  265 --APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             --chHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence              5889999999999999999965    78899999999998

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.10  E-value=1.1e-10  Score=127.76  Aligned_cols=101  Identities=24%  Similarity=0.298  Sum_probs=88.1

Q ss_pred             cccEEEEecCCCCeEEEeCC-----cceee------------------ccCCCCcEEEEEEeCC---EEEEEecCCeEEE
Q 002641          784 EMVKVLSNGHDSSADFWNHR-----ELVHV------------------DSSENGKVLSIACFRD---KIFSGHSDGTIKV  837 (897)
Q Consensus       784 d~~~LaSgs~DgtIklWd~~-----~~l~~------------------l~gH~~~V~sV~fspd---~L~Sgs~DgtIrl  837 (897)
                      -|+++|.|..|..|.|||+.     .+..+                  -.+|+..|.+++|+..   .|||||.|.||++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            47899999999999999975     11111                  2269999999999974   9999999999999


Q ss_pred             EeCCCCcceeEEEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCC
Q 002641          838 WTGRGSILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVRSNDS  886 (897)
Q Consensus       838 Wd~~~~~~~~i~~l~gH~~~V~slafspd-g~~L~SgS~D~tIrlWdi~~  886 (897)
                      ||+.++  ++..++..|++.|.+++|+|. +..|++||.|+++++.|.|.
T Consensus       271 WD~~~g--~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  271 WDVDTG--KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             EEcCCC--CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence            999999  578888899999999999986 68999999999999999983

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.10  E-value=4.7e-10  Score=118.31  Aligned_cols=143  Identities=16%  Similarity=0.149  Sum_probs=114.5

Q ss_pred             hhccccccCCCCCCCCCceeeee---cccccccceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEE
Q 002641          745 LLALNSFAQDPQGLRDINIHMKD---IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIA  820 (897)
Q Consensus       745 ~lsl~s~~~~~~~~~~~~~~i~~---~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~  820 (897)
                      .+++|...+-.++....+..-||   +.+.|+-.+...+.+..+.+|+|+|.|.+|.+|+.+ +.+..+......-+..+
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aa  235 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAA  235 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeecccccccccee
Confidence            34566666655555555555566   556666666678888899999999999999999998 77777777666677778


Q ss_pred             EeCC--EEEEEecCCeEEEEeCC---CCc---ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          821 CFRD--KIFSGHSDGTIKVWTGR---GSI---LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       821 fspd--~L~Sgs~DgtIrlWd~~---~~~---~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      .||+  ++++++.-.-|+||.+-   .+.   ..-+..++||..+|..++|+++.+.++|.|.||++|+||+.-.
T Consensus       236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr  310 (420)
T KOG2096|consen  236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR  310 (420)
T ss_pred             eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence            8998  89999999999999874   232   2335678999999999999999999999999999999998643

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.07  E-value=7.2e-10  Score=122.24  Aligned_cols=114  Identities=20%  Similarity=0.246  Sum_probs=102.6

Q ss_pred             cceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCC-------C
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR-------G  842 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~-------~  842 (897)
                      +.+.....+++|.+++.|...|.+.+|.+.  .++.++.+|=..|+|+.|+.|  +|+|||.||.|.+|++-       +
T Consensus        82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~  161 (476)
T KOG0646|consen   82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND  161 (476)
T ss_pred             cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC
Confidence            467778888999999999999999999987  899999999999999999987  99999999999999875       2


Q ss_pred             CcceeEEEeeccCCCeEEEEEccCC--CEEEEEeCCCcEEEEeCCCc
Q 002641          843 SILHLIQQIREHTKAVTGLAILQSG--EMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       843 ~~~~~i~~l~gH~~~V~slafspdg--~~L~SgS~D~tIrlWdi~~~  887 (897)
                      +...+++.|.+|+-+|+++...+.|  .+++|+|.|.++|+||+..|
T Consensus       162 ~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g  208 (476)
T KOG0646|consen  162 HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG  208 (476)
T ss_pred             CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence            2356789999999999999988764  68999999999999999998

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.06  E-value=5.4e-11  Score=121.74  Aligned_cols=125  Identities=16%  Similarity=0.195  Sum_probs=111.3

Q ss_pred             ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCC
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~  842 (897)
                      .+..||+..++...+..+..+.||++.|-+.++||.-  ..++.| .|+.-|.+++|+.|  .|++|+.+..+||+|++.
T Consensus        53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~  131 (334)
T KOG0278|consen   53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR  131 (334)
T ss_pred             EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccC
Confidence            5778999999999999999999999999999999954  555554 68899999999987  999999999999999998


Q ss_pred             CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641          843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       843 ~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~  893 (897)
                      .+ .+...+.||++.|..+-|+...+.|+|++.|++||+||.++| ..+++.
T Consensus       132 p~-App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~  182 (334)
T KOG0278|consen  132 PK-APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE  182 (334)
T ss_pred             CC-CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe
Confidence            75 567889999999999999988889999999999999999999 666553

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.06  E-value=3.2e-11  Score=130.84  Aligned_cols=125  Identities=18%  Similarity=0.240  Sum_probs=109.5

Q ss_pred             eeeecccccccceeEeeecccccEEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEE
Q 002641          764 HMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKV  837 (897)
Q Consensus       764 ~i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrl  837 (897)
                      .....+..|...+..+.+-++...|++|+.|..|++|++.    ..+.++.|..++|+++.|.++  .+++.+.|+.+++
T Consensus       166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~  245 (459)
T KOG0288|consen  166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL  245 (459)
T ss_pred             hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence            3445566677777788888888899999999999999986    588889999999999999876  8999999999999


Q ss_pred             EeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cce
Q 002641          838 WTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYA  890 (897)
Q Consensus       838 Wd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~  890 (897)
                      |++...  +...++.||++.|+++.|......++||+.|.||++||+..+ +..
T Consensus       246 Wnvd~~--r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~k  297 (459)
T KOG0288|consen  246 WNVDSL--RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSK  297 (459)
T ss_pred             eeccch--hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheec
Confidence            999987  678899999999999999877666999999999999999987 443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.06  E-value=6.1e-10  Score=120.98  Aligned_cols=118  Identities=20%  Similarity=0.267  Sum_probs=96.8

Q ss_pred             ceeEeeecccccEEEEecCCCCeEEEeCC-----------cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCC
Q 002641          775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR-----------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR  841 (897)
Q Consensus       775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----------~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~  841 (897)
                      ...+..+....+.++||+.|..|++|-+.           ..+..+..|..+|.+|.|+|+  +|+||+.+|.|-+|-..
T Consensus        16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~   95 (434)
T KOG1009|consen   16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG   95 (434)
T ss_pred             eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence            33333333445599999999999999874           256677889999999999997  99999999999999876


Q ss_pred             --------C------CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641          842 --------G------SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       842 --------~------~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l  892 (897)
                              +      ........+.+|.+.|..++|+|++.++++|+.|.++++||++.| ..+.+
T Consensus        96 ~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~  161 (434)
T KOG1009|consen   96 DVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL  161 (434)
T ss_pred             CcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec
Confidence                    2      112345668899999999999999999999999999999999999 44444

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.06  E-value=1.1e-09  Score=112.08  Aligned_cols=104  Identities=20%  Similarity=0.199  Sum_probs=76.3

Q ss_pred             cEEEEecCCCCeEEEeCCccee---------eccC-C-----CCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeE
Q 002641          786 VKVLSNGHDSSADFWNHRELVH---------VDSS-E-----NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI  848 (897)
Q Consensus       786 ~~LaSgs~DgtIklWd~~~~l~---------~l~g-H-----~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i  848 (897)
                      .+|+||+ ||.|+=|...+...         .... |     -..|.++-..|.  -++.++.|+.+.-||+.++  +..
T Consensus        73 ~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G--~i~  149 (325)
T KOG0649|consen   73 DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG--RIQ  149 (325)
T ss_pred             hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC--EEE
Confidence            3566665 49998777641111         0000 2     235677777773  5555568999999999999  578


Q ss_pred             EEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641          849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       849 ~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l  892 (897)
                      ++++||++.|.++.--...-.++||+.||++|+||.+++ +.+++
T Consensus       150 r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~i  194 (325)
T KOG0649|consen  150 REYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMI  194 (325)
T ss_pred             EEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEe
Confidence            899999999999998555556899999999999999998 65554

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.05  E-value=1.1e-10  Score=117.46  Aligned_cols=60  Identities=25%  Similarity=0.473  Sum_probs=51.1

Q ss_pred             CCCCcccccccccCCCCceecCCCcccchHHHHHHHhc---------------CCCCCCCCCcccCCCCCCcccHH
Q 002641          159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER---------------GNSSCPITRQKLSSTKLPKTNYV  219 (897)
Q Consensus       159 ~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~---------------~~~~CP~Cr~~~~~~~~~~pN~~  219 (897)
                      +..+++.||||++.++|||+++|||.||+.||.+|+..               +...||+||..+....+ .|.+.
T Consensus        14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L-vPiyg   88 (193)
T PLN03208         14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL-VPIYG   88 (193)
T ss_pred             cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE-EEeec
Confidence            56678999999999999999999999999999999852               23479999999988877 36643

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.04  E-value=3.1e-09  Score=114.22  Aligned_cols=124  Identities=15%  Similarity=0.119  Sum_probs=109.5

Q ss_pred             cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCC
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS  843 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~  843 (897)
                      ....|...+..+.+.|+.++++||+.|....||+..  .....+.||+..|+++.|+.|  +|+||..+|.|+||+..++
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg  138 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG  138 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC
Confidence            456788899999999999999999999999999987  788889999999999999987  9999999999999999988


Q ss_pred             cceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641          844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~  893 (897)
                      .  ....+.+--..+.=+.|+|.+..|+.|+.||.+-+|.+.++ ..+.|.
T Consensus       139 ~--~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~  187 (399)
T KOG0296|consen  139 G--EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS  187 (399)
T ss_pred             c--eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec
Confidence            3  45566555666777999999999999999999999999985 655554

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.04  E-value=9.8e-10  Score=114.86  Aligned_cols=114  Identities=16%  Similarity=0.242  Sum_probs=97.2

Q ss_pred             cceeEeeecccccEEEEecCCCCeEEEeCC-----cceeeccCCCCcEEEEEEeC---CEEEEEecCCeEEEEeCCCCc-
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSI-  844 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fsp---d~L~Sgs~DgtIrlWd~~~~~-  844 (897)
                      .+..|.|...|.++|.++|-|.|..|||+.     .+...+-.|..+|+.|+|..   +.|+|+|.||+||++|++.-+ 
T Consensus       152 PlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH  231 (364)
T KOG0290|consen  152 PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH  231 (364)
T ss_pred             cccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence            445566667788999999999999999987     24666778999999999997   399999999999999998543 


Q ss_pred             ---------------------------------------------ceeEEEeeccCCCeEEEEEccC-CCEEEEEeCCCc
Q 002641          845 ---------------------------------------------LHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKT  878 (897)
Q Consensus       845 ---------------------------------------------~~~i~~l~gH~~~V~slafspd-g~~L~SgS~D~t  878 (897)
                                                                   ..++..+++|++.|+.++|.|. +.+|.|+|.|.+
T Consensus       232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q  311 (364)
T KOG0290|consen  232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ  311 (364)
T ss_pred             ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence                                                         3345677899999999999997 589999999999


Q ss_pred             EEEEeCCCc
Q 002641          879 ARVRSNDSF  887 (897)
Q Consensus       879 IrlWdi~~~  887 (897)
                      +-+||+.+-
T Consensus       312 aliWDl~q~  320 (364)
T KOG0290|consen  312 ALIWDLQQM  320 (364)
T ss_pred             EEEEecccc
Confidence            999999753

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.03  E-value=5e-10  Score=124.97  Aligned_cols=123  Identities=18%  Similarity=0.203  Sum_probs=107.1

Q ss_pred             eeecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cc-eeeccCCCCcEEEEEEeC---C-EEEEEecCCeEEE
Q 002641          765 MKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--EL-VHVDSSENGKVLSIACFR---D-KIFSGHSDGTIKV  837 (897)
Q Consensus       765 i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~-l~~l~gH~~~V~sV~fsp---d-~L~Sgs~DgtIrl  837 (897)
                      ....+.||.+-+++..++.+|.+|+|||+|-.+.|||.-  ++ ...-+||.+.|+|++|-|   | +++||..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            456789999999999999999999999999999999975  43 444568999999999998   3 9999999999999


Q ss_pred             EeCCCCc--------ceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc
Q 002641          838 WTGRGSI--------LHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       838 Wd~~~~~--------~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~  887 (897)
                      +|+...+        ......+..|+..|..++..|++ +.+.|+|.||+||-+|++..
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence            9998411        24456678899999999999998 89999999999999999873

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.02  E-value=3.5e-09  Score=107.01  Aligned_cols=142  Identities=18%  Similarity=0.133  Sum_probs=114.9

Q ss_pred             hhhhccccccCCCCCCCCCceeeeecccc----------c-----ccceeEeeecccccEEEEecCCCCeEEEeCC--cc
Q 002641          743 LSLLALNSFAQDPQGLRDINIHMKDIMKG----------L-----RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--EL  805 (897)
Q Consensus       743 LA~lsl~s~~~~~~~~~~~~~~i~~~l~~----------~-----~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~  805 (897)
                      |+..++++.+. ..+.++.+++.|+..-.          |     ...+..+.+.|.|+.++||-.|.+..+||++  ++
T Consensus       187 lalyswn~~m~-~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~  265 (350)
T KOG0641|consen  187 LALYSWNGAMF-ASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM  265 (350)
T ss_pred             EEEEEecCcEE-EccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence            34344443332 26788999999963211          1     1445667778899999999999999999998  89


Q ss_pred             eeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcc--eeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 002641          806 VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL--HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV  881 (897)
Q Consensus       806 l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~--~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrl  881 (897)
                      ++.+..|...|.||.|+|.  ++++||.|..||+-|+.....  -++.....|+..+..+.|+|..-.|+|.|.|+|+.+
T Consensus       266 iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl  345 (350)
T KOG0641|consen  266 IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL  345 (350)
T ss_pred             eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence            9999999999999999997  999999999999999986521  235566789999999999999999999999999999


Q ss_pred             EeCC
Q 002641          882 RSND  885 (897)
Q Consensus       882 Wdi~  885 (897)
                      |-+.
T Consensus       346 wa~~  349 (350)
T KOG0641|consen  346 WALN  349 (350)
T ss_pred             eccC
Confidence            9764

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=3.5e-09  Score=111.68  Aligned_cols=119  Identities=14%  Similarity=0.233  Sum_probs=100.7

Q ss_pred             cccccccceeEeeecccccEEEEecCCCCeEEEeCC------cceeeccCCCCcEEEEEEeC----CEEEEEecCCeEEE
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR------ELVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKV  837 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~------~~l~~l~gH~~~V~sV~fsp----d~L~Sgs~DgtIrl  837 (897)
                      +..+|++.+..+.+.+.|+++|++|.|++++|||.+      .+....+.|.+.|+.|.|-+    +.+++||.|++++|
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            446788999999999999999999999999999964      56677788999999999964    39999999999999


Q ss_pred             EeCCCC-------cceeEEEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCC
Q 002641          838 WTGRGS-------ILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVRSNDS  886 (897)
Q Consensus       838 Wd~~~~-------~~~~i~~l~gH~~~V~slafspd--g~~L~SgS~D~tIrlWdi~~  886 (897)
                      |.-...       ......++...++.|+.|.|.|.  |-.+++++.||++|||+.-.
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d  145 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD  145 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence            986311       12335677788899999999996  78999999999999998654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.00  E-value=2.7e-09  Score=110.26  Aligned_cols=127  Identities=18%  Similarity=0.176  Sum_probs=104.0

Q ss_pred             CCCceeeeecccc-------cccceeEeeecccccEEEEecCCCCeEEEeCC----------------------------
Q 002641          759 RDINIHMKDIMKG-------LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----------------------------  803 (897)
Q Consensus       759 ~~~~~~i~~~l~~-------~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~----------------------------  803 (897)
                      .+.++++|++..+       .+.......++|+|.+++.|+.|..|...|.+                            
T Consensus        85 ~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Ffl  164 (313)
T KOG1407|consen   85 GDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFL  164 (313)
T ss_pred             CCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEE
Confidence            4556777776544       12445556667778887777777777666643                            


Q ss_pred             ---------------cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccC
Q 002641          804 ---------------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS  866 (897)
Q Consensus       804 ---------------~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspd  866 (897)
                                     +.+..++.|.....||.|+|+  +|++||.|..+.+||+..-  .|++.|.-|.-+|..+.||.|
T Consensus       165 t~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL--iC~R~isRldwpVRTlSFS~d  242 (313)
T KOG1407|consen  165 TNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL--ICERCISRLDWPVRTLSFSHD  242 (313)
T ss_pred             ecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh--hhheeeccccCceEEEEeccC
Confidence                           256667789999999999997  9999999999999999875  688999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCc
Q 002641          867 GEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       867 g~~L~SgS~D~tIrlWdi~~~  887 (897)
                      |++|+|||.|..|-|=++.+|
T Consensus       243 g~~lASaSEDh~IDIA~vetG  263 (313)
T KOG1407|consen  243 GRMLASASEDHFIDIAEVETG  263 (313)
T ss_pred             cceeeccCccceEEeEecccC
Confidence            999999999999998888888

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=98.99  E-value=3e-09  Score=125.41  Aligned_cols=118  Identities=15%  Similarity=0.181  Sum_probs=71.4

Q ss_pred             cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCC--------CCcEEEEEEeCC--EEEEEecCCeE
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSE--------NGKVLSIACFRD--KIFSGHSDGTI  835 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH--------~~~V~sV~fspd--~L~Sgs~DgtI  835 (897)
                      .+++|...+..+.+.|.+.+||+.+-||+|++||+.  .+..++.+-        ...+.-++|+|+  .|+..+.|++|
T Consensus       133 ~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~V  212 (933)
T KOG1274|consen  133 VLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTV  212 (933)
T ss_pred             eecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeE
Confidence            345555555555555555555555555555555554  343333331        122344455554  55555555555


Q ss_pred             EEEeCCCCcceeEEEee--ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          836 KVWTGRGSILHLIQQIR--EHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       836 rlWd~~~~~~~~i~~l~--gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ++++..++.  ....+.  .|...+++++|+|.|.||++++.||.|.|||+.+-
T Consensus       213 kvy~r~~we--~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~  264 (933)
T KOG1274|consen  213 KVYSRKGWE--LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH  264 (933)
T ss_pred             EEEccCCce--eheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence            555555543  222222  24445999999999999999999999999999964

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=4.5e-09  Score=111.44  Aligned_cols=126  Identities=14%  Similarity=0.072  Sum_probs=88.3

Q ss_pred             ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCC
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~  842 (897)
                      ....||...++....+|-+..++|+|.|++|++||++  ++...+  +...-...+|.|.  ++|.|...+.|++||++.
T Consensus        94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l--~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs  171 (311)
T KOG1446|consen   94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL--NLSGRPIAAFDPEGLIFALANGSELIKLYDLRS  171 (311)
T ss_pred             EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE--ecCCCcceeECCCCcEEEEecCCCeEEEEEecc
Confidence            4567889999999999988999999999999999987  222222  2222234566665  445554445777777664


Q ss_pred             Cc---------------------------------------------ceeEEEeeccCCCe---EEEEEccCCCEEEEEe
Q 002641          843 SI---------------------------------------------LHLIQQIREHTKAV---TGLAILQSGEMLYSGS  874 (897)
Q Consensus       843 ~~---------------------------------------------~~~i~~l~gH~~~V---~slafspdg~~L~SgS  874 (897)
                      -.                                             +....+|.+|...-   -+..|.|||+++++|+
T Consensus       172 ~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs  251 (311)
T KOG1446|consen  172 FDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGS  251 (311)
T ss_pred             cCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEec
Confidence            31                                             23455566665432   4678999999999999


Q ss_pred             CCCcEEEEeCCCc-cceeeec
Q 002641          875 LDKTARVRSNDSF-TYAIFIQ  894 (897)
Q Consensus       875 ~D~tIrlWdi~~~-~l~~l~~  894 (897)
                      .||+|.+|++++| ....+..
T Consensus       252 ~dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  252 DDGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             CCCcEEEEEcCCCcEeeEecC
Confidence            9999999999999 6655543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=98.98  E-value=2.3e-09  Score=125.02  Aligned_cols=116  Identities=18%  Similarity=0.197  Sum_probs=81.6

Q ss_pred             eeEeeecccccEEEEecCCCCeEEEeCC--cceeec---cCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc----
Q 002641          776 RKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVD---SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI----  844 (897)
Q Consensus       776 ~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l---~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~----  844 (897)
                      ...+..+..|++.+-|+..|+|-++|+.  -....+   ..|+++|..|+...-  .++|++.||.+++||.++..    
T Consensus       451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~  530 (910)
T KOG1539|consen  451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS  530 (910)
T ss_pred             eEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeee
Confidence            3444455566666666666666666665  222333   256666666666542  66666666666666665432    


Q ss_pred             -----------------------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-c
Q 002641          845 -----------------------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-T  888 (897)
Q Consensus       845 -----------------------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~  888 (897)
                                                         .+.++.|.||++.|++++|||||++|++++.|++||+||+-++ .
T Consensus       531 l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~l  610 (910)
T KOG1539|consen  531 LRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTL  610 (910)
T ss_pred             eccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcce
Confidence                                               1356678899999999999999999999999999999999998 5


Q ss_pred             cee
Q 002641          889 YAI  891 (897)
Q Consensus       889 l~~  891 (897)
                      +..
T Consensus       611 ID~  613 (910)
T KOG1539|consen  611 IDG  613 (910)
T ss_pred             eee
Confidence            443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.95  E-value=2.8e-09  Score=120.03  Aligned_cols=120  Identities=24%  Similarity=0.300  Sum_probs=101.8

Q ss_pred             cccccccceeEeeecccccEEEEecCCCCeEEEeCC------------cceeeccCCCCcEEEEEEeC--CEEEEEecCC
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR------------ELVHVDSSENGKVLSIACFR--DKIFSGHSDG  833 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~------------~~l~~l~gH~~~V~sV~fsp--d~L~Sgs~Dg  833 (897)
                      ..++|...+-++.++.++..+.||+.||+|+.|++.            ....++.||++.||.+++|+  +.|++||.||
T Consensus       339 tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~Dg  418 (577)
T KOG0642|consen  339 TFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDG  418 (577)
T ss_pred             EEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCc
Confidence            346778889999999999999999999999999542            46778899999999999997  4999999999


Q ss_pred             eEEEEeCCCCc---------------------------------------------------------------------
Q 002641          834 TIKVWTGRGSI---------------------------------------------------------------------  844 (897)
Q Consensus       834 tIrlWd~~~~~---------------------------------------------------------------------  844 (897)
                      |+|+|+.....                                                                     
T Consensus       419 Tvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~  498 (577)
T KOG0642|consen  419 TVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH  498 (577)
T ss_pred             eEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEec
Confidence            99999876433                                                                     


Q ss_pred             ----------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          845 ----------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       845 ----------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                                            ..++.....|...|+++++.|+|-+|.+|+.|+.+++|.+...
T Consensus       499 ~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  499 PTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             CCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence                                  2222333467889999999999999999999999999998665

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.93  E-value=1.1e-09  Score=117.49  Aligned_cols=105  Identities=16%  Similarity=0.186  Sum_probs=90.3

Q ss_pred             eeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeec
Q 002641          779 SPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE  853 (897)
Q Consensus       779 ~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~g  853 (897)
                      +.++|++-.+++|+.|..+..+|++   ..+.++.+|.++|.+|+|||.  .|+|||.|.+||||.++.+..+  ..+  
T Consensus       235 IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SR--diY--  310 (433)
T KOG0268|consen  235 ICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSR--DIY--  310 (433)
T ss_pred             eecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcch--hhh--
Confidence            3445588889999999999999987   888899999999999999995  9999999999999999977311  111  


Q ss_pred             cC---CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          854 HT---KAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       854 H~---~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      |+   +.|.||.||.|.++++|||.|+.||+|.....
T Consensus       311 htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  311 HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             hHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence            44   37999999999999999999999999987654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=98.93  E-value=6.1e-09  Score=113.43  Aligned_cols=125  Identities=22%  Similarity=0.256  Sum_probs=101.2

Q ss_pred             CCCCCceeeeeccccc-------ccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCC----CCcEEEEEEeC
Q 002641          757 GLRDINIHMKDIMKGL-------RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSE----NGKVLSIACFR  823 (897)
Q Consensus       757 ~~~~~~~~i~~~l~~~-------~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH----~~~V~sV~fsp  823 (897)
                      +..+...+.|++..++       .+.+..+..+.++..+.|++.|.++++.|+.  ....++...    ...++.+.|||
T Consensus       318 gH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp  397 (459)
T KOG0288|consen  318 GHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP  397 (459)
T ss_pred             cccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC
Confidence            3456668888754432       2567778888999999999999999999987  555555532    34488999999


Q ss_pred             C--EEEEEecCCeEEEEeCCCCcceeEEEeeccCC--CeEEEEEccCCCEEEEEeCCCcEEEEe
Q 002641          824 D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK--AVTGLAILQSGEMLYSGSLDKTARVRS  883 (897)
Q Consensus       824 d--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~--~V~slafspdg~~L~SgS~D~tIrlWd  883 (897)
                      +  ++++||.||.|+||++.+++  +...+...+.  +|++++|+|.|..+++++.++.+++|.
T Consensus       398 d~~YvaAGS~dgsv~iW~v~tgK--lE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  398 DGSYVAAGSADGSVYIWSVFTGK--LEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             CCceeeeccCCCcEEEEEccCce--EEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            7  99999999999999999994  5555555444  599999999999999999999999993

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=98.93  E-value=6.5e-09  Score=113.74  Aligned_cols=126  Identities=15%  Similarity=0.165  Sum_probs=107.6

Q ss_pred             ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCC
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~  842 (897)
                      .+++||...+..+.+.++...++++|.|..|+||...  ........|.++|+.+..+|.  +|+++|+||+.-+.|+++
T Consensus       255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~  334 (506)
T KOG0289|consen  255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISS  334 (506)
T ss_pred             hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccC
Confidence            4678999888888899999999999999999999987  555667789999999999985  999999999999999999


Q ss_pred             CcceeEEEeeccC--CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeec
Q 002641          843 SILHLIQQIREHT--KAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ  894 (897)
Q Consensus       843 ~~~~~i~~l~gH~--~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~  894 (897)
                      +.  .+......+  -.+++.+|+|||..|.+|+.|+.+++||++++ ....|..
T Consensus       335 g~--~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg  387 (506)
T KOG0289|consen  335 GS--QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG  387 (506)
T ss_pred             Cc--EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC
Confidence            84  443333222  25899999999999999999999999999988 6666654

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.93  E-value=3.3e-09  Score=116.91  Aligned_cols=124  Identities=19%  Similarity=0.308  Sum_probs=105.8

Q ss_pred             ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--c----ceee-------------c-cCCCCcEEEEEEeCC--
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--E----LVHV-------------D-SSENGKVLSIACFRD--  824 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~----~l~~-------------l-~gH~~~V~sV~fspd--  824 (897)
                      ..+..|+..+..+.++++..+.++++.|++|.-|++.  .    .+..             - ++|...+.+++.++|  
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            4556788889999999999999999999999999974  1    1111             1 278889999999998  


Q ss_pred             EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641          825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       825 ~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l  892 (897)
                      +|++|+.|..|.||+..+.  ..++.|++|.+.|.+++|--....++|+|.|++|++|++..- .+.+|
T Consensus       216 ylatgg~d~~v~Iw~~~t~--ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetl  282 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTL--EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETL  282 (479)
T ss_pred             EEEecCCCceEEEecCccc--chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHH
Confidence            9999999999999999998  478889999999999999877789999999999999999764 44333

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.92  E-value=5.7e-10  Score=115.88  Aligned_cols=152  Identities=14%  Similarity=0.143  Sum_probs=99.6

Q ss_pred             hhHHHHHHHHHHhhcCCCCCCCCCCCCceeeeccccccccccCcccccc---cc----ccccCCCCCCCCCCCCC-Chhh
Q 002641           40 NCRVFASYFKQVLENSNDSGLIIVTPPSVVLRKIEKVGGLHFDSEIESS---LD----KHLNNSSYSSSDSDAEA-TDEQ  111 (897)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~p~~~~~~~~~~~-~~~q  111 (897)
                      +|+--+|||++|++|.|.+++.   -++..-+|||++|-.-++-++.-.   .+    |.|..     ..+.... -..|
T Consensus       181 RCGqkgHwIqnCpTN~Dpnfdg---kRirrttGIPk~FLk~ve~p~e~~~a~imit~EG~yVv-----~qpdvqsWe~Yq  252 (427)
T COG5222         181 RCGQKGHWIQNCPTNQDPNFDG---KRIRRTTGIPKDFLKPVEGPNEPSNAAIMITPEGGYVV-----AQPDVQSWEKYQ  252 (427)
T ss_pred             ecCCCCchhhcCCCCCCCCccc---eeeeccCCCCHHhcccccCCCcccccceEEcCCCCeEE-----eccchHHHHHHH
Confidence            5888999999999999999997   378888999999986443332221   11    33331     1100000 0111


Q ss_pred             hhhhhcCCChhhHhhhccCCccccCCCCCCcccccccCCCCCCCCCCCCCCcccccccccCCCCceec-CCCcccchHHH
Q 002641          112 KNIRMASLEPRQRQIRKQKQPIFVESSCSPDHLIMADADNPPGIGKHTPPKDFVCPITTHIFDDPVTL-ETGQTYERRAI  190 (897)
Q Consensus       112 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ma~~~~~~~~~~~~~l~~el~CpIC~~l~~dPV~l-~CGHtFCr~CI  190 (897)
                      +....--++                    |+.+.-        ..+.+++  |.||.|..++++|+.+ +|||+||..||
T Consensus       253 ~r~~a~~~~--------------------~Dqv~k--------~~~~~i~--LkCplc~~Llrnp~kT~cC~~~fc~eci  302 (427)
T COG5222         253 QRTKAVAEI--------------------PDQVYK--------MQPPNIS--LKCPLCHCLLRNPMKTPCCGHTFCDECI  302 (427)
T ss_pred             HHHHhhhhC--------------------chhhhc--------cCCCCcc--ccCcchhhhhhCcccCccccchHHHHHH
Confidence            111111000                    010110        0211343  9999999999999998 99999999999


Q ss_pred             HHHHhcCCCCCCCCCcc-cCCCCCCcccHHHHHHHHHHHHh
Q 002641          191 QEWIERGNSSCPITRQK-LSSTKLPKTNYVLKRLIASWQEQ  230 (897)
Q Consensus       191 ~~~~~~~~~~CP~Cr~~-~~~~~~~~pN~~L~~li~~~~~~  230 (897)
                      ..-+-...+.||.|... +-.+.+ .|+...+.-|+.+...
T Consensus       303 ~~al~dsDf~CpnC~rkdvlld~l-~pD~dk~~EvE~~lkk  342 (427)
T COG5222         303 GTALLDSDFKCPNCSRKDVLLDGL-TPDIDKKLEVEKALKK  342 (427)
T ss_pred             hhhhhhccccCCCcccccchhhcc-CccHHHHHHHHHHHHH
Confidence            98776667899999764 445666 6999999999888764

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.92  E-value=3e-09  Score=111.14  Aligned_cols=102  Identities=18%  Similarity=0.365  Sum_probs=88.0

Q ss_pred             cccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcceeEEEeeccCCC
Q 002641          784 EMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA  857 (897)
Q Consensus       784 d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~  857 (897)
                      +|+.+++. .|+++..||++   +....-..|...|..+.|+|+   +|+||+.||.||+||.+..+ .+++++.+|.-+
T Consensus       183 dgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-~pv~el~~HsHW  260 (370)
T KOG1007|consen  183 DGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-FPVQELPGHSHW  260 (370)
T ss_pred             ccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-ccccccCCCceE
Confidence            67777776 58999999998   333344468889999999997   89999999999999999875 679999999999


Q ss_pred             eEEEEEccCC-CEEEEEeCCCcEEEEeCCCc
Q 002641          858 VTGLAILQSG-EMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       858 V~slafspdg-~~L~SgS~D~tIrlWdi~~~  887 (897)
                      |++|.|+|.. ..++|||.|..|.+|...+-
T Consensus       261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv  291 (370)
T KOG1007|consen  261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSV  291 (370)
T ss_pred             EEEEEecCccceEEEecCCCceeEEEecccc
Confidence            9999999975 78889999999999987653

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=98.90  E-value=3e-09  Score=121.00  Aligned_cols=106  Identities=21%  Similarity=0.286  Sum_probs=82.5

Q ss_pred             cccccEEEEecCCCCeEEEeCC--ccee--eccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCc----------
Q 002641          782 AFEMVKVLSNGHDSSADFWNHR--ELVH--VDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI----------  844 (897)
Q Consensus       782 s~d~~~LaSgs~DgtIklWd~~--~~l~--~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~----------  844 (897)
                      .+....|++++.|.++++||+.  ++..  .+.||.+.|-+++|.|+   .|++|+.||.|.|||++-..          
T Consensus       109 apge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~  188 (720)
T KOG0321|consen  109 APGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNR  188 (720)
T ss_pred             CCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhh
Confidence            3355689999999999999997  4444  48899999999999984   99999999999999988332          


Q ss_pred             ---------------ceeEEEeeccCCCeEE---EEEccCCCEEEEEeC-CCcEEEEeCCCc
Q 002641          845 ---------------LHLIQQIREHTKAVTG---LAILQSGEMLYSGSL-DKTARVRSNDSF  887 (897)
Q Consensus       845 ---------------~~~i~~l~gH~~~V~s---lafspdg~~L~SgS~-D~tIrlWdi~~~  887 (897)
                                     .+-+...+.|.+.|.+   +-++.|...|+|+|. |++|+|||++..
T Consensus       189 ~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~  250 (720)
T KOG0321|consen  189 IYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN  250 (720)
T ss_pred             hhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence                           0112223345555555   555688889999987 999999999875

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=98.90  E-value=9.1e-09  Score=108.73  Aligned_cols=125  Identities=17%  Similarity=0.203  Sum_probs=98.4

Q ss_pred             ecccccccceeEeeecccccEEEEecCCCCeEEEeCCc--ceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCc
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI  844 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~--~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~  844 (897)
                      +.+..|...+.++.+.+....+++||+|++|++||...  ...++ .....|+++..+.+.|+.|..|..|.+||+++-.
T Consensus        88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~-d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen   88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF-DQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc-ccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence            34556778888888888888999999999999999882  22222 2345899999999999999999999999998643


Q ss_pred             -------------c---------------------------------eeEEEeeccCC---------CeEEEEEccCCCE
Q 002641          845 -------------L---------------------------------HLIQQIREHTK---------AVTGLAILQSGEM  869 (897)
Q Consensus       845 -------------~---------------------------------~~i~~l~gH~~---------~V~slafspdg~~  869 (897)
                                   .                                 ..-..|+.|..         +|++++|+|-...
T Consensus       167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t  246 (323)
T KOG1036|consen  167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT  246 (323)
T ss_pred             chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence                         0                                 11124566654         7999999999889


Q ss_pred             EEEEeCCCcEEEEeCCCc-cceee
Q 002641          870 LYSGSLDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       870 L~SgS~D~tIrlWdi~~~-~l~~l  892 (897)
                      |+||+.||.|.+||+.+. .+..|
T Consensus       247 faTgGsDG~V~~Wd~~~rKrl~q~  270 (323)
T KOG1036|consen  247 FATGGSDGIVNIWDLFNRKRLKQL  270 (323)
T ss_pred             EEecCCCceEEEccCcchhhhhhc
Confidence            999999999999999886 44433

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.89  E-value=5.3e-10  Score=118.23  Aligned_cols=72  Identities=18%  Similarity=0.353  Sum_probs=65.1

Q ss_pred             CCCCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHHHHhCC
Q 002641          159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP  232 (897)
Q Consensus       159 ~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~~~~~~  232 (897)
                      .+.+-+.|-||.++|+-|++++||||||.-||..++.. .+.||.|+.++....+ +.|+.|.++|+.|.-.+.
T Consensus        19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~L-r~n~il~Eiv~S~~~~R~   90 (442)
T KOG0287|consen   19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDL-RNNRILDEIVKSLNFARN   90 (442)
T ss_pred             hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhh-hhhhHHHHHHHHHHHHHH
Confidence            46678999999999999999999999999999999985 5589999999999989 899999999999876554

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.89  E-value=6e-09  Score=119.55  Aligned_cols=120  Identities=16%  Similarity=0.127  Sum_probs=104.2

Q ss_pred             ecccccccceeEeeecccccEEEEecCCC-----CeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEE
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDS-----SADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKV  837 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~Dg-----tIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrl  837 (897)
                      +-+.||.-.+..+..+++|+.+||++...     .|++|+..  ...+.+.+|.-.|+.++||||  +|+|.|.|.++.+
T Consensus       519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl  598 (764)
T KOG1063|consen  519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSL  598 (764)
T ss_pred             HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEe
Confidence            35678889999999999999999998654     58899987  566689999999999999998  9999999999999


Q ss_pred             EeCCCCccee---EEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          838 WTGRGSILHL---IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       838 Wd~~~~~~~~---i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      |...... ..   ....+.|+--|+++.|+|++.+|+++|.|++|++|....+
T Consensus       599 ~~~~~~~-~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  599 YEVQEDI-KDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             eeeeccc-chhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            9987543 11   2236789999999999999999999999999999998765

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.88  E-value=5.6e-09  Score=116.82  Aligned_cols=120  Identities=17%  Similarity=0.117  Sum_probs=101.1

Q ss_pred             eeeeecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEE
Q 002641          763 IHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVW  838 (897)
Q Consensus       763 ~~i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlW  838 (897)
                      ..-|.+-++   .++-..|++||++||+.|.||.+||+|+.  +++...+.--+...||+||||  +|++|+.|--|.||
T Consensus       283 v~~w~~~~g---~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVw  359 (636)
T KOG2394|consen  283 VARWHIGEG---SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVW  359 (636)
T ss_pred             cceeEeccc---cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEE
Confidence            445666555   34445567799999999999999999998  677777777899999999998  99999999999999


Q ss_pred             eCCCCcceeEEEeeccCCCeEEEEEcc------------------------------------------------CCCEE
Q 002641          839 TGRGSILHLIQQIREHTKAVTGLAILQ------------------------------------------------SGEML  870 (897)
Q Consensus       839 d~~~~~~~~i~~l~gH~~~V~slafsp------------------------------------------------dg~~L  870 (897)
                      .+...  +.+.--+||+.+|+.|+|.|                                                ....|
T Consensus       360 Sf~er--RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRf  437 (636)
T KOG2394|consen  360 SFEER--RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRF  437 (636)
T ss_pred             Eeccc--eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEe
Confidence            99987  57888899999999999983                                                01368


Q ss_pred             EEEeCCCcEEEEeCCCc
Q 002641          871 YSGSLDKTARVRSNDSF  887 (897)
Q Consensus       871 ~SgS~D~tIrlWdi~~~  887 (897)
                      .|.+.|.++.+||+.-.
T Consensus       438 GSVGqDTqlcLWDlteD  454 (636)
T KOG2394|consen  438 GSVGQDTQLCLWDLTED  454 (636)
T ss_pred             ecccccceEEEEecchh
Confidence            89999999999999765

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.88  E-value=1.1e-09  Score=82.77  Aligned_cols=38  Identities=32%  Similarity=0.835  Sum_probs=33.3

Q ss_pred             ccccccCCCCc-eecCCCcccchHHHHHHHhcCCCCCCCC
Q 002641          166 CPITTHIFDDP-VTLETGQTYERRAIQEWIERGNSSCPIT  204 (897)
Q Consensus       166 CpIC~~l~~dP-V~l~CGHtFCr~CI~~~~~~~~~~CP~C  204 (897)
                      ||||.+.+.+| +.++|||+||+.|+.+|++. +..||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            89999999999 57899999999999999997 6799987

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=98.88  E-value=1.5e-08  Score=107.05  Aligned_cols=116  Identities=15%  Similarity=0.198  Sum_probs=93.3

Q ss_pred             eeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEe
Q 002641          776 RKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI  851 (897)
Q Consensus       776 ~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l  851 (897)
                      ..++.|++.|.++|+|..||.|-+||+.  ...+++.+|..+|+|++||+|  .|+|.|.|..|++||+..+.  +++.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs--~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS--PLKRI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC--ceeEE
Confidence            5688899999999999999999999987  788899999999999999997  99999999999999999875  22211


Q ss_pred             e-----------c------------------------c----------CC-CeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641          852 R-----------E------------------------H----------TK-AVTGLAILQSGEMLYSGSLDKTARVRSND  885 (897)
Q Consensus       852 ~-----------g------------------------H----------~~-~V~slafspdg~~L~SgS~D~tIrlWdi~  885 (897)
                      +           .                        |          .+ .-.+..|.+.|+++++|...|.+.++|..
T Consensus       104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~  183 (405)
T KOG1273|consen  104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE  183 (405)
T ss_pred             EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence            1           0                        0          00 11223467779999999999999999998


Q ss_pred             Cc-cceeee
Q 002641          886 SF-TYAIFI  893 (897)
Q Consensus       886 ~~-~l~~l~  893 (897)
                      +- ++..|+
T Consensus       184 t~e~vas~r  192 (405)
T KOG1273|consen  184 TLECVASFR  192 (405)
T ss_pred             hheeeeeee
Confidence            86 555544

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.87  E-value=6.5e-10  Score=90.94  Aligned_cols=61  Identities=23%  Similarity=0.419  Sum_probs=35.6

Q ss_pred             CCCcccccccccCCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHH
Q 002641          160 PPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLI  224 (897)
Q Consensus       160 l~~el~CpIC~~l~~dPV~l-~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li  224 (897)
                      +++-+.|++|.++|++||.+ .|.|.||..||.+.+.   ..||+|+.+....++ +.|+.|.++|
T Consensus         4 le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~-~~NrqLd~~i   65 (65)
T PF14835_consen    4 LEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDI-QINRQLDSMI   65 (65)
T ss_dssp             HHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS-----HHHHHHH
T ss_pred             HHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHH-HhhhhhhccC
Confidence            34568899999999999975 9999999999987654   359999999988999 7999999886

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.84  E-value=1.5e-08  Score=106.07  Aligned_cols=121  Identities=19%  Similarity=0.163  Sum_probs=97.5

Q ss_pred             ecccccccceeEeeeccccc-EEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeC--C-EEEEEecCCeEEEEe
Q 002641          767 DIMKGLRELRKYSPLAFEMV-KVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFR--D-KIFSGHSDGTIKVWT  839 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~-~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fsp--d-~L~Sgs~DgtIrlWd  839 (897)
                      .+...|...+.-..+.|+.. +|+|++.||.|++||++   ..+..+.+|..+||+|.|+|  | +++|||.|..|.+|.
T Consensus       208 sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc  287 (370)
T KOG1007|consen  208 SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSC  287 (370)
T ss_pred             chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEe
Confidence            34455566677777777644 68999999999999987   68888999999999999999  3 999999999999997


Q ss_pred             CCCCc---------------------------ceeEEEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCc
Q 002641          840 GRGSI---------------------------LHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       840 ~~~~~---------------------------~~~i~~l~gH~~~V~slafsp-dg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ...-.                           --.+.++..|...|++++||. |.-.|+|-|.||.+.|=.+...
T Consensus       288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~  363 (370)
T KOG1007|consen  288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF  363 (370)
T ss_pred             ccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence            64221                           112457889999999999986 4567889999999998776554

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=1.6e-09  Score=110.73  Aligned_cols=57  Identities=21%  Similarity=0.486  Sum_probs=49.3

Q ss_pred             CCcccccccccCCCCceecCCCcccchHHHHHHHhcC--CCCCCCCCcccCCCCCCcccH
Q 002641          161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERG--NSSCPITRQKLSSTKLPKTNY  218 (897)
Q Consensus       161 ~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~--~~~CP~Cr~~~~~~~~~~pN~  218 (897)
                      -..|.|.||++.-+|||++.|||-||..||.+|+...  ...||+|+..++.+.++ |=+
T Consensus        45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv-PlY  103 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV-PLY  103 (230)
T ss_pred             CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEE-eee
Confidence            3479999999999999999999999999999999843  44699999999888874 544

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=98.79  E-value=8.7e-09  Score=114.15  Aligned_cols=111  Identities=18%  Similarity=0.199  Sum_probs=96.5

Q ss_pred             eEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc--------
Q 002641          777 KYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI--------  844 (897)
Q Consensus       777 ~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~--------  844 (897)
                      .....++|.+..+++..||.|.|||+.  .+++.|+||++.+.|+..++|  .|-||+-|++||-||++++.        
T Consensus       513 yALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~  592 (705)
T KOG0639|consen  513 YALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS  592 (705)
T ss_pred             hhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh
Confidence            445678899999999999999999997  899999999999999999987  99999999999999999765        


Q ss_pred             ------------------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          845 ------------------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       845 ------------------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                                                    ......+.-|..-|.++.|.+-|++++|.+.|.-+..|.+--|
T Consensus       593 SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG  665 (705)
T KOG0639|consen  593 SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG  665 (705)
T ss_pred             hhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence                                          1111234457778999999999999999999999999988766

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.79  E-value=1.4e-08  Score=110.67  Aligned_cols=123  Identities=15%  Similarity=0.212  Sum_probs=109.1

Q ss_pred             eeeeecccccccceeEeeecccccEEEEecCCCCeEEEeCC------------------cceeeccCCCCcEEEEEEeCC
Q 002641          763 IHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR------------------ELVHVDSSENGKVLSIACFRD  824 (897)
Q Consensus       763 ~~i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~------------------~~l~~l~gH~~~V~sV~fspd  824 (897)
                      +..-..+..|...++++.++++|..+|||+.+|.|.+|-..                  .....+.+|...|+.++|+||
T Consensus        55 V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d  134 (434)
T KOG1009|consen   55 VEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD  134 (434)
T ss_pred             EEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC
Confidence            44446788899999999999999999999999999999743                  245667789999999999997


Q ss_pred             --EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          825 --KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       825 --~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                        .+++|+-|+++++||+..+  .....+.+|...|..++|.|-+.++++-|.|...+.+++...
T Consensus       135 ~~~l~s~s~dns~~l~Dv~~G--~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~  197 (434)
T KOG1009|consen  135 SNFLVSGSVDNSVRLWDVHAG--QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLK  197 (434)
T ss_pred             CceeeeeeccceEEEEEeccc--eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeee
Confidence              9999999999999999999  578899999999999999999999999999998887776654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=98.76  E-value=2.1e-08  Score=110.65  Aligned_cols=114  Identities=23%  Similarity=0.281  Sum_probs=91.0

Q ss_pred             cceeEeeecccc-cEEEEecCCCCeEEEeCC------cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCC
Q 002641          774 ELRKYSPLAFEM-VKVLSNGHDSSADFWNHR------ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGS  843 (897)
Q Consensus       774 ~~~~~~~~s~d~-~~LaSgs~DgtIklWd~~------~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~  843 (897)
                      ++....+|+... +.+|+|+.-|.|-+||++      .-+..+.+|.++|.++.|+|.   ++++.|.||+||+=|+.+.
T Consensus       188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~  267 (498)
T KOG4328|consen  188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGN  267 (498)
T ss_pred             ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecch
Confidence            333444455444 789999999999999993      567778899999999999994   9999999999999998865


Q ss_pred             c-------------------------------------------ceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcE
Q 002641          844 I-------------------------------------------LHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTA  879 (897)
Q Consensus       844 ~-------------------------------------------~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tI  879 (897)
                      .                                           ......+.-|.+.|++++++|-. .+|+|||.|+|.
T Consensus       268 i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~  347 (498)
T KOG4328|consen  268 ISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTA  347 (498)
T ss_pred             hhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcce
Confidence            3                                           01112233478899999999974 789999999999


Q ss_pred             EEEeCCCc
Q 002641          880 RVRSNDSF  887 (897)
Q Consensus       880 rlWdi~~~  887 (897)
                      +|||++.-
T Consensus       348 kIWD~R~l  355 (498)
T KOG4328|consen  348 KIWDLRQL  355 (498)
T ss_pred             eeeehhhh
Confidence            99999873

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=98.75  E-value=1.7e-08  Score=114.88  Aligned_cols=110  Identities=13%  Similarity=0.151  Sum_probs=92.5

Q ss_pred             EeeecccccEEEEecCCCCeEEEeCCc--------ceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCccee
Q 002641          778 YSPLAFEMVKVLSNGHDSSADFWNHRE--------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL  847 (897)
Q Consensus       778 ~~~~s~d~~~LaSgs~DgtIklWd~~~--------~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~  847 (897)
                      |..+....+.|+.+..||.|.++|..+        .+..+..|.+.|+.+.|-|.  .|++.+.|.|||+||+++..+.-
T Consensus        57 Fs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G  136 (720)
T KOG0321|consen   57 FSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG  136 (720)
T ss_pred             ccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec
Confidence            444445577899999999999999861        23456679999999999996  99999999999999999985333


Q ss_pred             EEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc
Q 002641          848 IQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       848 i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ...+.||+..|.+++|.|+. ..|++|+.||.|.|||++-.
T Consensus       137 ~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n  177 (720)
T KOG0321|consen  137 GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN  177 (720)
T ss_pred             ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence            34499999999999999974 78999999999999999754

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.74  E-value=4.5e-09  Score=109.08  Aligned_cols=71  Identities=15%  Similarity=0.274  Sum_probs=63.2

Q ss_pred             CCCCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHHHHhC
Q 002641          159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQN  231 (897)
Q Consensus       159 ~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~~~~~  231 (897)
                      .+..-+.|-||.+.++-|+.++|||+||.-||.+++.. ...||+||.......+ +.+..++.+++.+...+
T Consensus        21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrl-r~~s~~~ei~es~~~~r   91 (391)
T COG5432          21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRL-RGSSGSREINESHARNR   91 (391)
T ss_pred             cchhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhc-ccchhHHHHHHhhhhcc
Confidence            45667899999999999999999999999999999985 5589999999888888 79999999999987654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=9.8e-09  Score=123.82  Aligned_cols=106  Identities=16%  Similarity=0.233  Sum_probs=79.7

Q ss_pred             EEEEecCCCCeEEEeCC--cceeeccCCCC--cEEEEEEeCC---EEEEEecC---CeEEEEeCCCCcceeEEEeeccCC
Q 002641          787 KVLSNGHDSSADFWNHR--ELVHVDSSENG--KVLSIACFRD---KIFSGHSD---GTIKVWTGRGSILHLIQQIREHTK  856 (897)
Q Consensus       787 ~LaSgs~DgtIklWd~~--~~l~~l~gH~~--~V~sV~fspd---~L~Sgs~D---gtIrlWd~~~~~~~~i~~l~gH~~  856 (897)
                      .|+||+.+|.+.|||++  +.+-.+..|.+  .+..|.|+|+   .+++++.|   -.|.+||++... .+++++.+|..
T Consensus       176 ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-sP~k~~~~H~~  254 (1049)
T KOG0307|consen  176 ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-SPLKILEGHQR  254 (1049)
T ss_pred             HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-Cchhhhccccc
Confidence            36777777777777777  33444444433  4677888886   55555554   468888887553 56788899999


Q ss_pred             CeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641          857 AVTGLAILQSG-EMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       857 ~V~slafspdg-~~L~SgS~D~tIrlWdi~~~-~l~~l~  893 (897)
                      .|.++.|++.+ ++++|++.|++|.+||..+| .+..|.
T Consensus       255 GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p  293 (1049)
T KOG0307|consen  255 GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP  293 (1049)
T ss_pred             ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence            99999999976 89999999999999999998 555554

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.73  E-value=8.4e-09  Score=78.84  Aligned_cols=39  Identities=38%  Similarity=0.994  Sum_probs=36.1

Q ss_pred             ccccccCCCCce-ecCCCcccchHHHHHHHh-cCCCCCCCC
Q 002641          166 CPITTHIFDDPV-TLETGQTYERRAIQEWIE-RGNSSCPIT  204 (897)
Q Consensus       166 CpIC~~l~~dPV-~l~CGHtFCr~CI~~~~~-~~~~~CP~C  204 (897)
                      ||||.+.+.+|+ +++|||+||+.|+.+|++ .+...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 889999999999999999 566689987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=98.72  E-value=1.1e-07  Score=112.50  Aligned_cols=119  Identities=16%  Similarity=0.092  Sum_probs=95.5

Q ss_pred             ceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEE
Q 002641          775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ  850 (897)
Q Consensus       775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~  850 (897)
                      ...+.+++.++.++++|+.+++|.+|.+.  +.-..+..-+-++.+++|+.+  +++.||.|-.||+-+..+.  .....
T Consensus        56 g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~--s~~~~  133 (933)
T KOG1274|consen   56 GELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS--SQEKV  133 (933)
T ss_pred             CceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc--chhee
Confidence            33455566667788888888888888876  333344445677888888876  9999999999999999876  36788


Q ss_pred             eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641          851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV  895 (897)
Q Consensus       851 l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~  895 (897)
                      ++||.++|.++.|+|.|++|++.+.||+|++||+.++ +..++..+
T Consensus       134 lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v  179 (933)
T KOG1274|consen  134 LRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGV  179 (933)
T ss_pred             ecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccC
Confidence            9999999999999999999999999999999999998 55555443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=98.71  E-value=1.2e-08  Score=108.42  Aligned_cols=114  Identities=21%  Similarity=0.196  Sum_probs=88.4

Q ss_pred             ccccccceeE-eeecccccEEEEecCCCCeEEEeCC--cceeecc---CCCCcEEEEEEeCC--EEEEEecCCeEEEEeC
Q 002641          769 MKGLRELRKY-SPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDS---SENGKVLSIACFRD--KIFSGHSDGTIKVWTG  840 (897)
Q Consensus       769 l~~~~~~~~~-~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~---gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~  840 (897)
                      +.+|...++- -.++...++++|+|.|.+||+||+.  .++.+|-   ||.+.|.+|.|+++  +|+|||.|.++++|++
T Consensus       131 ~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l  210 (385)
T KOG1034|consen  131 YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRL  210 (385)
T ss_pred             eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEec
Confidence            3344433333 3344467899999999999999998  5555554   69999999999986  9999999999999999


Q ss_pred             CCCc--------------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 002641          841 RGSI--------------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSN  884 (897)
Q Consensus       841 ~~~~--------------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi  884 (897)
                      ...+                          +....+-.-|+.+|-|+.|.  |++++|-|.++.|..|..
T Consensus       211 ~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~p  278 (385)
T KOG1034|consen  211 NVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKP  278 (385)
T ss_pred             ChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEec
Confidence            8332                          00011234589999999998  789999999999999987

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=98.70  E-value=7.8e-08  Score=103.81  Aligned_cols=119  Identities=13%  Similarity=0.087  Sum_probs=98.6

Q ss_pred             ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--------cceeecc-CCCCcEEEEEEeCC--EEEEEecCCeE
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--------ELVHVDS-SENGKVLSIACFRD--KIFSGHSDGTI  835 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--------~~l~~l~-gH~~~V~sV~fspd--~L~Sgs~DgtI  835 (897)
                      .-+.+|.+.++.+.|+.++.+|+||+.|..+++|++.        +.+.... .|.+.|+|++|+..  .++||+.+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            3455678889999999999999999999999999986        2333322 24689999999864  99999999999


Q ss_pred             EEEeCCCCcceeEEEee--ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          836 KVWTGRGSILHLIQQIR--EHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       836 rlWd~~~~~~~~i~~l~--gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      .+.|+.+.+  .+..+.  ...+.|+.+..+|..+.|++.+.||.|.+||++..
T Consensus       130 I~HDiEt~q--si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~  181 (609)
T KOG4227|consen  130 IKHDIETKQ--SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR  181 (609)
T ss_pred             Eeeecccce--eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCC
Confidence            999999873  444443  23459999999999999999999999999999865

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=98.70  E-value=4.1e-08  Score=112.60  Aligned_cols=94  Identities=14%  Similarity=0.182  Sum_probs=79.8

Q ss_pred             ccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC-C----EEEEEecCCeEEEEeCCCCcc
Q 002641          773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR-D----KIFSGHSDGTIKVWTGRGSIL  845 (897)
Q Consensus       773 ~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp-d----~L~Sgs~DgtIrlWd~~~~~~  845 (897)
                      +..++.+.++|+|++||+|..-|+++||++.  ........|...|.|+.|+. +    +|+|+|.|..|+|+|+... .
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-y  537 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-Y  537 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-c
Confidence            5667889999999999999999999999997  66667789999999999984 3    8999999999999999865 3


Q ss_pred             eeEEEeeccCCCeEEEEEccCC
Q 002641          846 HLIQQIREHTKAVTGLAILQSG  867 (897)
Q Consensus       846 ~~i~~l~gH~~~V~slafspdg  867 (897)
                      .+++++.+|...|+++.|..+|
T Consensus       538 ~l~qtld~HSssITsvKFa~~g  559 (1080)
T KOG1408|consen  538 DLVQTLDGHSSSITSVKFACNG  559 (1080)
T ss_pred             chhhhhcccccceeEEEEeecC
Confidence            5677788887777777775544

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.68  E-value=4.8e-08  Score=116.93  Aligned_cols=117  Identities=17%  Similarity=0.201  Sum_probs=103.5

Q ss_pred             cccccccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCc
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI  844 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~  844 (897)
                      .+.||.+......++.||++++|.|.|.++|+|+++   ....+.-||++.|+.++|+|+.++|+|.|.|.++|+.... 
T Consensus       170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~~-  248 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNGT-  248 (967)
T ss_pred             eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEecccc-
Confidence            467888888888888999999999999999999997   3444777999999999999999999999999999977664 


Q ss_pred             ceeEEEeeccCC-CeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          845 LHLIQQIREHTK-AVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       845 ~~~i~~l~gH~~-~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                        .+.++.+|.. .++.++..++.-..+|++.|+++++||..+.
T Consensus       249 --~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  249 --QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             --eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence              3558889876 6899999998899999999999999998764

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=98.67  E-value=1.6e-07  Score=108.02  Aligned_cols=104  Identities=20%  Similarity=0.233  Sum_probs=93.9

Q ss_pred             cccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeE
Q 002641          784 EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT  859 (897)
Q Consensus       784 d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~  859 (897)
                      ++.+|.|.+-+|+|.-||+.  +....+..-.+.||+++.+|.  .++.|+.||.+...++.++....-..|.-.++.|.
T Consensus        79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL  158 (691)
T KOG2048|consen   79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL  158 (691)
T ss_pred             cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence            68899999999999999987  777777788899999999994  89999999999999998886555666777889999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          860 GLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       860 slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      +++|+|+|..+++||.||.||+||..++
T Consensus       159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~  186 (691)
T KOG2048|consen  159 SLSWNPTGTKIAGGSIDGVIRIWDVKSG  186 (691)
T ss_pred             EEEecCCccEEEecccCceEEEEEcCCC
Confidence            9999999999999999999999999998

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.65  E-value=2.3e-07  Score=95.30  Aligned_cols=115  Identities=19%  Similarity=0.181  Sum_probs=89.3

Q ss_pred             cceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEE-eCC-EEEEEecCCeEEEEeCCCCcceeEE
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIAC-FRD-KIFSGHSDGTIKVWTGRGSILHLIQ  849 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~f-spd-~L~Sgs~DgtIrlWd~~~~~~~~i~  849 (897)
                      ..++..+..|..+-++.++-|+.+.-||+.  +..++++||++.|.+|.- +.+ .++||+.||++|+||.++++  .+.
T Consensus       115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k--~v~  192 (325)
T KOG0649|consen  115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQK--HVS  192 (325)
T ss_pred             CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccc--eeE
Confidence            556777787766666666689999999998  888999999999999988 444 99999999999999999984  554


Q ss_pred             Eee---------ccC-CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641          850 QIR---------EHT-KAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       850 ~l~---------gH~-~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~  893 (897)
                      .+.         .|. ++|-+++.+  ..++++|+ ...+.+|.+++. +.++|+
T Consensus       193 ~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  193 MIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             EeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEe
Confidence            443         333 357777765  55788776 457899999987 656553

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.65  E-value=4.4e-07  Score=93.95  Aligned_cols=109  Identities=11%  Similarity=0.109  Sum_probs=83.2

Q ss_pred             ceeEeeecccccEE--EEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEecC---CeEEEEeCCCCcce
Q 002641          775 LRKYSPLAFEMVKV--LSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSD---GTIKVWTGRGSILH  846 (897)
Q Consensus       775 ~~~~~~~s~d~~~L--aSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~D---gtIrlWd~~~~~~~  846 (897)
                      .+....++|+|..+  ++|..++.|.+||++ +.+..+  +...+..|.|+|+  +++.|+.+   |.|.+||+++.  .
T Consensus        61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~--~  136 (194)
T PF08662_consen   61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK--K  136 (194)
T ss_pred             ceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC--E
Confidence            36667778888875  445577899999998 555554  4567789999997  77777644   67999999976  4


Q ss_pred             eEEEeeccCCCeEEEEEccCCCEEEEEeC------CCcEEEEeCCCccc
Q 002641          847 LIQQIREHTKAVTGLAILQSGEMLYSGSL------DKTARVRSNDSFTY  889 (897)
Q Consensus       847 ~i~~l~gH~~~V~slafspdg~~L~SgS~------D~tIrlWdi~~~~l  889 (897)
                      .+..+. | ..++.++|+|||++|++++.      |..++||+..+..+
T Consensus       137 ~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l  183 (194)
T PF08662_consen  137 KISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL  183 (194)
T ss_pred             Eeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence            555554 3 34789999999999999974      78899999876533

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=98.65  E-value=2.3e-07  Score=98.40  Aligned_cols=126  Identities=15%  Similarity=0.191  Sum_probs=96.0

Q ss_pred             eecccccccceeEeeecccccEEEEecCCCCeEEEeCC-------cceeeccCCCCcEEEEEEeCC---EEEEEecCCeE
Q 002641          766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-------ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTI  835 (897)
Q Consensus       766 ~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-------~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtI  835 (897)
                      -.+++||...+....|+.||++|+|.+.|++|++|+++       ++++.-. .-+-.+.|.|.||   .++++.+..++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence            35789999999999999999999999999999999987       1222111 1235678999998   88999999999


Q ss_pred             EEEeCCCCc---c--ee-----EEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCccceee
Q 002641          836 KVWTGRGSI---L--HL-----IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIF  892 (897)
Q Consensus       836 rlWd~~~~~---~--~~-----i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l~~l  892 (897)
                      ++|......   .  ..     ..--+-|.-.|-++-..-++.+|.|+|.|.+|.+|++++..++++
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~i  224 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSI  224 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeee
Confidence            999875322   0  10     111233566777788877889999999999999999995555544

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.64  E-value=1.3e-08  Score=78.19  Aligned_cols=36  Identities=28%  Similarity=0.748  Sum_probs=23.1

Q ss_pred             ccccccCCCC----ceecCCCcccchHHHHHHHhcC---CCCCC
Q 002641          166 CPITTHIFDD----PVTLETGQTYERRAIQEWIERG---NSSCP  202 (897)
Q Consensus       166 CpIC~~l~~d----PV~l~CGHtFCr~CI~~~~~~~---~~~CP  202 (897)
                      ||||.+ |.+    |++++|||+||+.||.+++..+   ...||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 999    9999999999999999998853   44677

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=1.2e-07  Score=100.28  Aligned_cols=100  Identities=11%  Similarity=0.165  Sum_probs=84.8

Q ss_pred             ccEEEEecCC-----CCeEEEeCC------cceeeccCCCCcEEEEEEeCC------EEEEEecCCeEEEEeCCCCc---
Q 002641          785 MVKVLSNGHD-----SSADFWNHR------ELVHVDSSENGKVLSIACFRD------KIFSGHSDGTIKVWTGRGSI---  844 (897)
Q Consensus       785 ~~~LaSgs~D-----gtIklWd~~------~~l~~l~gH~~~V~sV~fspd------~L~Sgs~DgtIrlWd~~~~~---  844 (897)
                      ..+||.|+.+     +.++||...      ..+..+.+|+.+|+.++|.|+      +|++++.|| |+||.++...   
T Consensus       184 ~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i  262 (361)
T KOG2445|consen  184 EPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAI  262 (361)
T ss_pred             CceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchh
Confidence            3468888876     578899865      456677799999999999995      899999999 9999998411   


Q ss_pred             ---------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641          845 ---------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSND  885 (897)
Q Consensus       845 ---------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~  885 (897)
                                     ...+..+.+|++.|+.+.|+-.|..|.|.|.||+||+|...
T Consensus       263 ~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  263 EEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             hhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence                           34566788999999999999999999999999999999754

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.61  E-value=3e-08  Score=79.36  Aligned_cols=47  Identities=28%  Similarity=0.490  Sum_probs=40.6

Q ss_pred             CcccccccccCCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCcccC
Q 002641          162 KDFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLS  209 (897)
Q Consensus       162 ~el~CpIC~~l~~dPV~l~CGHt-FCr~CI~~~~~~~~~~CP~Cr~~~~  209 (897)
                      ++..|+||++-..+++.++|||. ||..|+.+|+. ....||+||+++.
T Consensus         1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence            46789999999999999999999 99999999998 5668999999875

...

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=98.59  E-value=8.4e-08  Score=101.55  Aligned_cols=75  Identities=15%  Similarity=0.179  Sum_probs=68.4

Q ss_pred             EEEEEEeC--CEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641          816 VLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       816 V~sV~fsp--d~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l  892 (897)
                      ..|+.|++  ++|++|..||.|-+||+.+.  ..-+.+.+|.-+|+|++||+||+.|+|+|.|..|++||+..| ++..+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF--RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcccc--chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence            78999998  49999999999999999997  467789999999999999999999999999999999999998 55443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.59  E-value=1.2e-07  Score=107.66  Aligned_cols=123  Identities=14%  Similarity=0.147  Sum_probs=99.3

Q ss_pred             ecccccccceeEeeecc-cccEEEEecCCCCeEEEeCC----cce---eeccCC-CCcEEEEEEeC--C-EEEEEecCCe
Q 002641          767 DIMKGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR----ELV---HVDSSE-NGKVLSIACFR--D-KIFSGHSDGT  834 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~----~~l---~~l~gH-~~~V~sV~fsp--d-~L~Sgs~Dgt  834 (897)
                      .++.+|.+.+.-..|++ +..+||++|.|..|+||.+.    +.+   ....|| +-.|-++.|+|  | ++++ +..|+
T Consensus        73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s-~a~g~  151 (1012)
T KOG1445|consen   73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILAS-GAHGS  151 (1012)
T ss_pred             ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEe-ccCce
Confidence            34667778887777776 56789999999999999986    211   222345 55789999998  4 5555 45689


Q ss_pred             EEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc--cceee
Q 002641          835 IKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF--TYAIF  892 (897)
Q Consensus       835 IrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~--~l~~l  892 (897)
                      +++||+.++  +.+..+.+|+..|.+..|+.||..+++++.|+.|||||.+..  .+++.
T Consensus       152 v~i~D~stq--k~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~t  209 (1012)
T KOG1445|consen  152 VYITDISTQ--KTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTT  209 (1012)
T ss_pred             EEEEEcccC--ceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccc
Confidence            999999998  578899999999999999999999999999999999999875  44443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.58  E-value=2.4e-07  Score=100.68  Aligned_cols=129  Identities=19%  Similarity=0.248  Sum_probs=98.8

Q ss_pred             CCCCCCceeeeec---------------cccccccee-EeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEE
Q 002641          756 QGLRDINIHMKDI---------------MKGLRELRK-YSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVL  817 (897)
Q Consensus       756 ~~~~~~~~~i~~~---------------l~~~~~~~~-~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~  817 (897)
                      .+..|.+..+|++               +.||+..+. +.||....+.|+|+|.|.+|.+||+.  ..+-++. |.+-|+
T Consensus        99 SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~  177 (472)
T KOG0303|consen   99 SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVY  177 (472)
T ss_pred             cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEE
Confidence            4556666777754               456654444 45566677889999999999999997  4444454 999999


Q ss_pred             EEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCC-eEEEEEccCCCEEEEEe---CCCcEEEEeCCCc
Q 002641          818 SIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA-VTGLAILQSGEMLYSGS---LDKTARVRSNDSF  887 (897)
Q Consensus       818 sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~-V~slafspdg~~L~SgS---~D~tIrlWdi~~~  887 (897)
                      ++.|+.|  +|+|.+.|..|||||.+++  ..+..-.+|.+. -..+-|--+|..+.+|-   .++++-+||..+-
T Consensus       178 S~sfn~dGs~l~TtckDKkvRv~dpr~~--~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl  251 (472)
T KOG0303|consen  178 SMSFNRDGSLLCTTCKDKKVRVIDPRRG--TVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNL  251 (472)
T ss_pred             EEEeccCCceeeeecccceeEEEcCCCC--cEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccc
Confidence            9999987  9999999999999999999  466666788773 34566878888665552   5789999997653

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=3.3e-08  Score=96.85  Aligned_cols=52  Identities=21%  Similarity=0.604  Sum_probs=44.1

Q ss_pred             CCcccccccccCCCC--ceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCC
Q 002641          161 PKDFVCPITTHIFDD--PVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL  213 (897)
Q Consensus       161 ~~el~CpIC~~l~~d--PV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~  213 (897)
                      ..-+.||||++-+.+  ||.+.|||.||+.||...++. ...||+|++.+..+.+
T Consensus       129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~  182 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQF  182 (187)
T ss_pred             ccccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhh
Confidence            345999999999976  556899999999999999885 4589999998877766

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=98.58  E-value=2e-07  Score=99.08  Aligned_cols=115  Identities=20%  Similarity=0.288  Sum_probs=94.7

Q ss_pred             ccccceeEeeecc-cccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEec-CCeEEEEeCCCCc
Q 002641          771 GLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHS-DGTIKVWTGRGSI  844 (897)
Q Consensus       771 ~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~-DgtIrlWd~~~~~  844 (897)
                      +...+..+..++| +.+.++.|++..++-|+.-.  ..+..+-||.+.|+.+.|.++  .|++|+. |-.|-.||++...
T Consensus       205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~  284 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR  284 (406)
T ss_pred             cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence            4455666666666 66799999999998888754  888999999999999999997  9999987 7899999999764


Q ss_pred             ceeEEEeeccCC-CeEEEEE--ccCCCEEEEEeCCCcEEEEeCCC
Q 002641          845 LHLIQQIREHTK-AVTGLAI--LQSGEMLYSGSLDKTARVRSNDS  886 (897)
Q Consensus       845 ~~~i~~l~gH~~-~V~slaf--spdg~~L~SgS~D~tIrlWdi~~  886 (897)
                       .++..+..|.+ .-..+-|  .|+|++|+||+.||.|++||+++
T Consensus       285 -~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  285 -DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             -chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence             66778888876 3334444  58899999999999999999988

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.57  E-value=2.8e-07  Score=110.51  Aligned_cols=116  Identities=17%  Similarity=0.102  Sum_probs=97.3

Q ss_pred             eEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEee
Q 002641          777 KYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR  852 (897)
Q Consensus       777 ~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~  852 (897)
                      .....+.+.-++++|+.-+.|.+|+..  ..-..+.||.+.++++.|+-|  +++|+|.|.++|+|++.+.+ ....+.-
T Consensus       137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~-~~~~~~f  215 (967)
T KOG0974|consen  137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSRE-VLGCTGF  215 (967)
T ss_pred             EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccc-ccCcccc
Confidence            344566678899999999999999986  332358899999999999876  99999999999999999885 3345677


Q ss_pred             ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCccceeeecc
Q 002641          853 EHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIFIQV  895 (897)
Q Consensus       853 gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l~~l~~~  895 (897)
                      ||+..|+.+.|+|+  .++|++.|.|.++|+....+++++.++
T Consensus       216 gHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h  256 (967)
T KOG0974|consen  216 GHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEH  256 (967)
T ss_pred             cccceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhh
Confidence            89999999999988  899999999999998766666666544

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.56  E-value=2.1e-07  Score=99.68  Aligned_cols=103  Identities=21%  Similarity=0.295  Sum_probs=80.5

Q ss_pred             cccEEEEecCCCCeEEEeCC----cceeeccCCC-CcEEEEEEeC-C-EEEEEe----cCCeEEEEeCCCCcceeEE-Ee
Q 002641          784 EMVKVLSNGHDSSADFWNHR----ELVHVDSSEN-GKVLSIACFR-D-KIFSGH----SDGTIKVWTGRGSILHLIQ-QI  851 (897)
Q Consensus       784 d~~~LaSgs~DgtIklWd~~----~~l~~l~gH~-~~V~sV~fsp-d-~L~Sgs----~DgtIrlWd~~~~~~~~i~-~l  851 (897)
                      .++.+.|++.||+|++||++    .....+..|. .+..|++.+- + +++.|.    .|..+.+||++..+ +.+. -+
T Consensus        83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q-q~l~~~~  161 (376)
T KOG1188|consen   83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ-QLLRQLN  161 (376)
T ss_pred             CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc-chhhhhh
Confidence            57789999999999999987    3444455565 4566666652 3 666653    57889999999875 4343 45


Q ss_pred             eccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCc
Q 002641          852 REHTKAVTGLAILQS-GEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       852 ~gH~~~V~slafspd-g~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ..|...|+++.|+|. .+.|+|||.||-|.++|++..
T Consensus       162 eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  162 ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             hhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            679999999999997 589999999999999999764

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.55  E-value=1.6e-07  Score=97.47  Aligned_cols=111  Identities=15%  Similarity=0.135  Sum_probs=89.6

Q ss_pred             cccceeEeeecccccEEEEecCCCCeEEEeCC------cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCC
Q 002641          772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS  843 (897)
Q Consensus       772 ~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~------~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~  843 (897)
                      |...+....+.+-...=++|+.+..+..|++.      +.-..++-.+-.|..+..-||  .++|+|.||.||||+-++.
T Consensus       204 h~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl  283 (323)
T KOG0322|consen  204 HKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL  283 (323)
T ss_pred             ccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC
Confidence            44445555555444455788888889999986      222223334567888999998  9999999999999999998


Q ss_pred             cceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 002641          844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSN  884 (897)
Q Consensus       844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi  884 (897)
                        .++..++-|...|++++|+|+.+.++++|.|++|-+|++
T Consensus       284 --~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  284 --NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             --CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence              588999999999999999999999999999999999985

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.54  E-value=8.3e-07  Score=96.11  Aligned_cols=114  Identities=9%  Similarity=0.088  Sum_probs=82.1

Q ss_pred             eEeeecccccEEE-EecCCCCeEEEeCC--cceeeccCCC-----C--cEEEEEEeCC--E-EEEEecCCeEEEEeCCCC
Q 002641          777 KYSPLAFEMVKVL-SNGHDSSADFWNHR--ELVHVDSSEN-----G--KVLSIACFRD--K-IFSGHSDGTIKVWTGRGS  843 (897)
Q Consensus       777 ~~~~~s~d~~~La-Sgs~DgtIklWd~~--~~l~~l~gH~-----~--~V~sV~fspd--~-L~Sgs~DgtIrlWd~~~~  843 (897)
                      ....+++++.+++ ++..|+.|++||+.  +.+..+..+.     .  ....++|+|+  . +++.+.++.|.+||+.++
T Consensus       160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~  239 (300)
T TIGR03866       160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY  239 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence            3456788888774 55579999999987  4444443221     1  2346889987  4 455566788999999887


Q ss_pred             cceeEEEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCc-cceeee
Q 002641          844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS-~D~tIrlWdi~~~-~l~~l~  893 (897)
                      +  .+..+ .+...+.+++|+|+|++|++++ .+++|++||++++ .+..++
T Consensus       240 ~--~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       240 E--VLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             c--EEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            3  34433 3445789999999999998874 6899999999998 556553

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4328 consensus WD40 protein [Function unknown]

Probab=98.54  E-value=2e-07  Score=102.96  Aligned_cols=107  Identities=19%  Similarity=0.119  Sum_probs=86.5

Q ss_pred             eeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcce--eEEE
Q 002641          779 SPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILH--LIQQ  850 (897)
Q Consensus       779 ~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~--~i~~  850 (897)
                      ..++.+...++.|..=|...+||++   .....+.-|...|.+|+++|-   +++|||.|+|.+|||++.-..+  ++-.
T Consensus       285 ~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls  364 (498)
T KOG4328|consen  285 LDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS  364 (498)
T ss_pred             ccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee
Confidence            3445566666777766789999987   446667789899999999983   9999999999999999954322  2344


Q ss_pred             eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641          851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVRSND  885 (897)
Q Consensus       851 l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~  885 (897)
                      ...|+..|.+..|||+|-.|++-+.|..|||||..
T Consensus       365 t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  365 TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             cccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            55699999999999998679999999999999984

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=4.7e-08  Score=102.84  Aligned_cols=53  Identities=23%  Similarity=0.545  Sum_probs=47.0

Q ss_pred             CCCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCC
Q 002641          160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL  213 (897)
Q Consensus       160 l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~  213 (897)
                      .+....|.+|++-..+|--++|||.||..||..|... ...||.||..+.+..+
T Consensus       236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV  288 (293)
T ss_pred             CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence            4556999999999999999999999999999999985 3469999999887765

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.53  E-value=1.1e-06  Score=95.28  Aligned_cols=102  Identities=13%  Similarity=0.196  Sum_probs=85.6

Q ss_pred             cccEEEE-ecC-CCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeE-EEEeCCCCcceeEEEeeccCC
Q 002641          784 EMVKVLS-NGH-DSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTI-KVWTGRGSILHLIQQIREHTK  856 (897)
Q Consensus       784 d~~~LaS-gs~-DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtI-rlWd~~~~~~~~i~~l~gH~~  856 (897)
                      ++.++|- ++. .|.|.|||+.  +.+.++..|++.+.+++|+++  +|||+|..||| ||+.+.++  +.+..|+--..
T Consensus       140 ~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G--~kl~eFRRG~~  217 (391)
T KOG2110|consen  140 ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG--QKLYEFRRGTY  217 (391)
T ss_pred             CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc--cEeeeeeCCce
Confidence            4446554 444 4899999987  788888999999999999997  99999999985 99999988  46777775444


Q ss_pred             --CeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          857 --AVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       857 --~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                        .|.+++|+|++.+|.+.|..+||.+|.+...
T Consensus       218 ~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  218 PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             eeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence              4689999999999999999999999998764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=5.6e-07  Score=98.92  Aligned_cols=117  Identities=18%  Similarity=0.286  Sum_probs=94.2

Q ss_pred             eEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc--------
Q 002641          777 KYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI--------  844 (897)
Q Consensus       777 ~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~--------  844 (897)
                      .+..++.+|..+++|+.||++|+|++.  ..+.....|.+.|.++.|+||  .|+|-+.| ..+||++.++.        
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            678889999999999999999999976  666667789999999999998  89999999 99999999872        


Q ss_pred             -------------------ceeE---------E-----Eeec-----------cCCCeEEEEEccCCCEEEEEeCCCcEE
Q 002641          845 -------------------LHLI---------Q-----QIRE-----------HTKAVTGLAILQSGEMLYSGSLDKTAR  880 (897)
Q Consensus       845 -------------------~~~i---------~-----~l~g-----------H~~~V~slafspdg~~L~SgS~D~tIr  880 (897)
                                         +.+.         .     ..++           -.+.|++++++++|++++-|+.||.|-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence                               0000         0     0011           123789999999999999999999999


Q ss_pred             EEeCCCc-cceeeec
Q 002641          881 VRSNDSF-TYAIFIQ  894 (897)
Q Consensus       881 lWdi~~~-~l~~l~~  894 (897)
                      |++..+- .++.+++
T Consensus       307 i~~~~~lq~~~~vk~  321 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKE  321 (398)
T ss_pred             EEEeceeeeeEeehh
Confidence            9998875 4444443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.52  E-value=8.2e-07  Score=96.15  Aligned_cols=103  Identities=17%  Similarity=0.138  Sum_probs=79.9

Q ss_pred             cEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--E-EEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEE
Q 002641          786 VKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--K-IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG  860 (897)
Q Consensus       786 ~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~-L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~s  860 (897)
                      ..++|++.|+.+++||..  +.+..+.+|.. +.+++|+|+  . +++++.|++|++||..++.  .+..+..|.. +..
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~-~~~   77 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGE--VIGTLPSGPD-PEL   77 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCc--EEEeccCCCC-ccE
Confidence            568899999999999986  66777776644 678999997  4 4677889999999999873  4555655544 567


Q ss_pred             EEEccCCCEEEEE-eCCCcEEEEeCCCc-cceee
Q 002641          861 LAILQSGEMLYSG-SLDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       861 lafspdg~~L~Sg-S~D~tIrlWdi~~~-~l~~l  892 (897)
                      ++|+|+|+.++.+ +.|+++++||++++ .+..+
T Consensus        78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~  111 (300)
T TIGR03866        78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEI  111 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe
Confidence            8999999877554 56899999999887 44444

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.52  E-value=6.5e-08  Score=101.69  Aligned_cols=49  Identities=20%  Similarity=0.436  Sum_probs=41.2

Q ss_pred             CCCcccccccccCCCCc--------eecCCCcccchHHHHHHHhcCCCCCCCCCcccC
Q 002641          160 PPKDFVCPITTHIFDDP--------VTLETGQTYERRAIQEWIERGNSSCPITRQKLS  209 (897)
Q Consensus       160 l~~el~CpIC~~l~~dP--------V~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~  209 (897)
                      ..++..||||++.+.++        ++++|||.||+.||.+|+.. ..+||+||..+.
T Consensus       171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~  227 (238)
T PHA02929        171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence            44578999999987764        56699999999999999874 568999999875

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.52  E-value=1.6e-06  Score=95.63  Aligned_cols=117  Identities=26%  Similarity=0.353  Sum_probs=98.6

Q ss_pred             cccccccceeEeeecccccEEEEecC-CCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCC
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGH-DSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGR  841 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~-DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~  841 (897)
                      ...+|...+....+.+++..+++++. |+.+++|+..  ..+..+.+|...|.+++|+|+   .+++++.|++|++||..
T Consensus       150 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~  229 (466)
T COG2319         150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS  229 (466)
T ss_pred             EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC
Confidence            34556667777888889988999886 9999999987  688888899999999999986   45555999999999988


Q ss_pred             CCcceeEE-EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          842 GSILHLIQ-QIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       842 ~~~~~~i~-~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      .+  ..+. .+.+|...+ ...|+|++..+++++.|+++++||++..
T Consensus       230 ~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~  273 (466)
T COG2319         230 TG--KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSS  273 (466)
T ss_pred             CC--cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence            65  4555 689999886 4489999989999999999999999876

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=98.50  E-value=6.6e-07  Score=103.04  Aligned_cols=112  Identities=24%  Similarity=0.274  Sum_probs=93.7

Q ss_pred             cceeEeeecccccEEEEecCCCCeEEEeCC--ccee-------ecc-CCCCcEEEEEEeCC-EEEEEecCCeEEEEeCCC
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVH-------VDS-SENGKVLSIACFRD-KIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~-------~l~-gH~~~V~sV~fspd-~L~Sgs~DgtIrlWd~~~  842 (897)
                      ..+-.+.+.+++..|++|+.||.|++||..  +.++       .+. +..--||+|.|-.+ .|++|.+-|+|++||...
T Consensus       155 sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~  234 (691)
T KOG2048|consen  155 SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIF  234 (691)
T ss_pred             ceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccC
Confidence            455567778899999999999999999987  2222       111 13345999998765 999999999999999999


Q ss_pred             CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       843 ~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      +  .+++.+..|.+.|.+++..+++++++++|.|++|..+...++
T Consensus       235 g--TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  235 G--TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             c--chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence            8  588999999999999999999999999999999988877665

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.48  E-value=6.1e-08  Score=75.33  Aligned_cols=40  Identities=43%  Similarity=0.963  Sum_probs=33.9

Q ss_pred             cccccccCCC---CceecCCCcccchHHHHHHHhcCCCCCCCCC
Q 002641          165 VCPITTHIFD---DPVTLETGQTYERRAIQEWIERGNSSCPITR  205 (897)
Q Consensus       165 ~CpIC~~l~~---dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr  205 (897)
                      .|+||++-|.   .++.++|||.||..||.+|++. ...||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence            5999999994   4566799999999999999987 45999996

...

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=98.47  E-value=5.7e-07  Score=98.08  Aligned_cols=34  Identities=12%  Similarity=0.479  Sum_probs=31.0

Q ss_pred             CCcccccccccCCCCceecCCCcccchHHHHHHH
Q 002641          161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWI  194 (897)
Q Consensus       161 ~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~  194 (897)
                      ++++.||||...|+||++++|||+.|+.|-...+
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~   35 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARNIL   35 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence            5789999999999999999999999999987543

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.46  E-value=1.3e-07  Score=72.93  Aligned_cols=44  Identities=34%  Similarity=0.873  Sum_probs=38.7

Q ss_pred             cccccccCCCCceecC-CCcccchHHHHHHHhcCCCCCCCCCccc
Q 002641          165 VCPITTHIFDDPVTLE-TGQTYERRAIQEWIERGNSSCPITRQKL  208 (897)
Q Consensus       165 ~CpIC~~l~~dPV~l~-CGHtFCr~CI~~~~~~~~~~CP~Cr~~~  208 (897)
                      .|+||.+.+.+|+.+. |||.||..|+..|+..+...||.|+..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            4999999998888875 9999999999999987667899998753

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=98.44  E-value=1.5e-06  Score=96.81  Aligned_cols=129  Identities=12%  Similarity=0.133  Sum_probs=104.0

Q ss_pred             CCCCceeeee--------cccccccceeEeeecccccEEEEecCCCCeEEEeCC-c-ceeeccCC-CCcEEEEEEeCC--
Q 002641          758 LRDINIHMKD--------IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-E-LVHVDSSE-NGKVLSIACFRD--  824 (897)
Q Consensus       758 ~~~~~~~i~~--------~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~-~l~~l~gH-~~~V~sV~fspd--  824 (897)
                      ....++.+|+        .+++|+..+.++.+.....+||+++..|-|.|..+. . ...+|... ...|.-+.|+|.  
T Consensus        98 G~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr  177 (673)
T KOG4378|consen   98 GQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKR  177 (673)
T ss_pred             CcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccc
Confidence            3445566775        477888889999999999999999999999999987 3 33334333 345678999985  


Q ss_pred             -EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc
Q 002641          825 -KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       825 -~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~  887 (897)
                       +|.++|.||+|.+||+.... +...-...|..+...++|+|.. .+|+|.+.|+.|.+||++..
T Consensus       178 ~lL~~asd~G~VtlwDv~g~s-p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~  241 (673)
T KOG4378|consen  178 FLLSIASDKGAVTLWDVQGMS-PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ  241 (673)
T ss_pred             eeeEeeccCCeEEEEeccCCC-cccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence             89999999999999999874 3344567799999999999975 68889999999999999875

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=98.44  E-value=1e-06  Score=93.86  Aligned_cols=117  Identities=13%  Similarity=0.129  Sum_probs=92.2

Q ss_pred             eeEeeecccccEEEEecCCCCeEEEeCC-----cceee-----ccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCC
Q 002641          776 RKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHV-----DSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       776 ~~~~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~~-----l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~  842 (897)
                      .....|++||.+|..| ....|+++|+.     -...+     -.|..+-+.|++|+|-   .++.|+...++=|+.-..
T Consensus       161 AhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~  239 (406)
T KOG2919|consen  161 AHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG  239 (406)
T ss_pred             heeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence            3567889999999976 67899999984     11111     2234678999999994   899999998888887777


Q ss_pred             CcceeEEEeeccCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCc--cceeeecc
Q 002641          843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DKTARVRSNDSF--TYAIFIQV  895 (897)
Q Consensus       843 ~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~-D~tIrlWdi~~~--~l~~l~~~  895 (897)
                      .  .+++.+.||.+.|+-+.|.++|+.|+||+. |-.|-.||++..  .+-.|.++
T Consensus       240 ~--~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rh  293 (406)
T KOG2919|consen  240 R--RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERH  293 (406)
T ss_pred             C--CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhh
Confidence            6  578889999999999999999999999984 778999999874  44444433

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.43  E-value=2.1e-06  Score=92.97  Aligned_cols=66  Identities=18%  Similarity=0.342  Sum_probs=48.4

Q ss_pred             CcccccccccC-CCCce---ec-CCCcccchHHHHHHHhcCCCCCCCCCcccCCCCC---CcccHHHHHHHHHH
Q 002641          162 KDFVCPITTHI-FDDPV---TL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL---PKTNYVLKRLIASW  227 (897)
Q Consensus       162 ~el~CpIC~~l-~~dPV---~l-~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~---~~pN~~L~~li~~~  227 (897)
                      ++..||+|..- +..|-   .+ +|||+||..|+..+|..+...||.|+.++....+   +.++..+.+-|+.-
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~iR   75 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDIR   75 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHHHH
Confidence            45789999983 33443   22 7999999999999988777789999999877662   13666665555533

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=98.42  E-value=9.7e-07  Score=101.65  Aligned_cols=108  Identities=18%  Similarity=0.112  Sum_probs=96.1

Q ss_pred             EeeecccccEEEEecCCCCeEEEeCC--cceeeccC---CCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEE
Q 002641          778 YSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSS---ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ  850 (897)
Q Consensus       778 ~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~g---H~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~  850 (897)
                      -..+.+..+++++++.|+.|+|||+.  +..+.|+|   |.+..--|...|.  ++++...|.++.++|.-++  .++..
T Consensus       601 Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg--EcvA~  678 (1080)
T KOG1408|consen  601 DMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG--ECVAQ  678 (1080)
T ss_pred             EeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc--hhhhh
Confidence            34556678899999999999999997  77778876   5677888888886  9999999999999999998  58999


Q ss_pred             eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       851 l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ..||...|+.+.|.+|-++|+|.+.||.|-||.+...
T Consensus       679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             hcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence            9999999999999999999999999999999988643

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.42  E-value=1.5e-06  Score=91.65  Aligned_cols=108  Identities=17%  Similarity=0.190  Sum_probs=88.7

Q ss_pred             EeeecccccEEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEe---CCEEEEEecCCeEEEEeCCCCcceeEEE
Q 002641          778 YSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACF---RDKIFSGHSDGTIKVWTGRGSILHLIQQ  850 (897)
Q Consensus       778 ~~~~s~d~~~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fs---pd~L~Sgs~DgtIrlWd~~~~~~~~i~~  850 (897)
                      ...++..+..++++-.+|.+.+-+.+    +.++.+++|.-+.|-..|+   |+.++|||.||.+.-||++... ..+..
T Consensus       126 slD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~  204 (339)
T KOG0280|consen  126 SLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWH  204 (339)
T ss_pred             EEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceeee
Confidence            34556667789999999999855544    5566899999999999997   5799999999999999999443 33433


Q ss_pred             -eeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCC
Q 002641          851 -IREHTKAVTGLAILQS-GEMLYSGSLDKTARVRSNDS  886 (897)
Q Consensus       851 -l~gH~~~V~slafspd-g~~L~SgS~D~tIrlWdi~~  886 (897)
                       -+-|+..|.++.-+|. +.+|++|+.|..|++||.++
T Consensus       205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn  242 (339)
T KOG0280|consen  205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN  242 (339)
T ss_pred             cceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence             6779999999988864 78999999999999999985

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=4.7e-07  Score=102.78  Aligned_cols=109  Identities=18%  Similarity=0.216  Sum_probs=93.9

Q ss_pred             cceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCC-------
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR-------  841 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~-------  841 (897)
                      ..+....+.+.|..|+.|+.|+.+..+|+.   +..+++.-|...|.+|+|++.  +++|||.||++.|+-..       
T Consensus       608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~q  687 (733)
T KOG0650|consen  608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQ  687 (733)
T ss_pred             eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhc
Confidence            444555666789999999999999999987   688888999999999999996  99999999999988543       


Q ss_pred             CCcceeEEEeeccCCC----eEEEEEccCCCEEEEEeCCCcEEEE
Q 002641          842 GSILHLIQQIREHTKA----VTGLAILQSGEMLYSGSLDKTARVR  882 (897)
Q Consensus       842 ~~~~~~i~~l~gH~~~----V~slafspdg~~L~SgS~D~tIrlW  882 (897)
                      +....++..++||...    |..+.|+|..-+|+|++.||+||+|
T Consensus       688 npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  688 NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            2224667889999886    8999999999999999999999999

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.40  E-value=8.6e-07  Score=66.46  Aligned_cols=38  Identities=32%  Similarity=0.483  Sum_probs=36.5

Q ss_pred             eeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 002641          846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRS  883 (897)
Q Consensus       846 ~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWd  883 (897)
                      +++.++.+|.+.|++++|+|+++.|+|||.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            47889999999999999999999999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.40  E-value=3.3e-07  Score=101.48  Aligned_cols=109  Identities=17%  Similarity=0.279  Sum_probs=94.3

Q ss_pred             ecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC-C-EEEEEecCCeEEEEeCCCCcceeEEEeeccCC
Q 002641          781 LAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR-D-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK  856 (897)
Q Consensus       781 ~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp-d-~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~  856 (897)
                      |-|.--+|+++|..|.++.-|+.  +.+..+....+.+..++-+| + .+-.|+..|+|.+|.....  .++..+-.|.+
T Consensus       217 FLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk--ePLvKiLcH~g  294 (545)
T KOG1272|consen  217 FLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK--EPLVKILCHRG  294 (545)
T ss_pred             ccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc--chHHHHHhcCC
Confidence            34444578889999999988987  88888888889999999999 4 9999999999999999877  46667778999


Q ss_pred             CeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-ccee
Q 002641          857 AVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAI  891 (897)
Q Consensus       857 ~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~  891 (897)
                      +|+++++.++|+++++.|.|..++|||+++. .+.+
T Consensus       295 ~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t  330 (545)
T KOG1272|consen  295 PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHT  330 (545)
T ss_pred             CcceEEECCCCcEEeecccccceeEeeeccccccce
Confidence            9999999999999999999999999999986 4443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=98.38  E-value=3e-06  Score=99.60  Aligned_cols=104  Identities=16%  Similarity=0.248  Sum_probs=93.9

Q ss_pred             cccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC--CEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeE
Q 002641          784 EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT  859 (897)
Q Consensus       784 d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp--d~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~  859 (897)
                      .-+.|+.|+.+|.+++||++  +.+++++++...|+++.-+|  |.++.|..+|+|.+++++.+  +.+.+|+.-.+.|+
T Consensus       171 YLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d--kil~sFk~d~g~Vt  248 (910)
T KOG1539|consen  171 YLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD--KILMSFKQDWGRVT  248 (910)
T ss_pred             heeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC--cEEEEEEcccccee
Confidence            56789999999999999998  99999999999999999999  69999999999999999998  57889986679999


Q ss_pred             EEEEccCCC-EEEEEeCCCcEEEEeCCCccc
Q 002641          860 GLAILQSGE-MLYSGSLDKTARVRSNDSFTY  889 (897)
Q Consensus       860 slafspdg~-~L~SgS~D~tIrlWdi~~~~l  889 (897)
                      +++|..||+ .+++|+..|.+-+||+....+
T Consensus       249 slSFrtDG~p~las~~~~G~m~~wDLe~kkl  279 (910)
T KOG1539|consen  249 SLSFRTDGNPLLASGRSNGDMAFWDLEKKKL  279 (910)
T ss_pred             EEEeccCCCeeEEeccCCceEEEEEcCCCee
Confidence            999999995 667777889999999988733

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.38  E-value=3.4e-06  Score=92.93  Aligned_cols=104  Identities=29%  Similarity=0.420  Sum_probs=87.9

Q ss_pred             ccccc-EEEEecC-CCCeEEEeCC---cceeeccCCCCcEEEEEEeCC--EEEEEec-CCeEEEEeCCCCcceeEEEeec
Q 002641          782 AFEMV-KVLSNGH-DSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHS-DGTIKVWTGRGSILHLIQQIRE  853 (897)
Q Consensus       782 s~d~~-~LaSgs~-DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd--~L~Sgs~-DgtIrlWd~~~~~~~~i~~l~g  853 (897)
                      .+++. .++..+. |+.+.+||..   .....+.+|...|..++|+|+  .+++++. |+++++|++...  ..+..+.+
T Consensus       119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  196 (466)
T COG2319         119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG--KPLSTLAG  196 (466)
T ss_pred             CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC--ceEEeecc
Confidence            44555 5555444 9999999986   677788899999999999997  7888886 999999999985  46888999


Q ss_pred             cCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCc
Q 002641          854 HTKAVTGLAILQSGE-MLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       854 H~~~V~slafspdg~-~L~SgS~D~tIrlWdi~~~  887 (897)
                      |...|.+++|+|++. .+++++.|++|++||...+
T Consensus       197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~  231 (466)
T COG2319         197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG  231 (466)
T ss_pred             CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence            999999999999998 6666699999999998866

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=98.37  E-value=2e-06  Score=95.75  Aligned_cols=111  Identities=11%  Similarity=0.146  Sum_probs=90.2

Q ss_pred             cceeEeeeccccc-EEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcce
Q 002641          774 ELRKYSPLAFEMV-KVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILH  846 (897)
Q Consensus       774 ~~~~~~~~s~d~~-~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~  846 (897)
                      ..++...+++..+ .|.++|++|.|.+||+.   ...+-...|..+...|+|+|.   +|+|.|.|..|.+||+....  
T Consensus       165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~--  242 (673)
T KOG4378|consen  165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA--  242 (673)
T ss_pred             CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc--
Confidence            4455666666544 57789999999999997   455556679999999999994   99999999999999999752  


Q ss_pred             eEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       847 ~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ....+. ...+.++|+|.++|.+|+.|+..|.|..||++..
T Consensus       243 s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  243 STDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST  282 (673)
T ss_pred             ccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence            222222 3457889999999999999999999999999975

>smart00184 RING Ring finger

Probab=98.36  E-value=3.4e-07  Score=68.02  Aligned_cols=39  Identities=44%  Similarity=1.005  Sum_probs=35.8

Q ss_pred             ccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCC
Q 002641          166 CPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPIT  204 (897)
Q Consensus       166 CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~C  204 (897)
                      |+||++...+|+.++|||.||..|+..|+..+...||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            899999999999999999999999999998556679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.34  E-value=1.9e-06  Score=99.42  Aligned_cols=118  Identities=14%  Similarity=0.137  Sum_probs=96.5

Q ss_pred             cccccccceeEeeecccccEEEEecCCCCeEEEeCC---c---ceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEe
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---E---LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT  839 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~---~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd  839 (897)
                      .+.+|.-.+.-..|++||++|+|.|.|+++.+|...   .   -....+.|+.-|++..|+|+  +|+|+|.|.+|++|.
T Consensus       567 ~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~  646 (764)
T KOG1063|consen  567 ELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE  646 (764)
T ss_pred             eecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence            477889999999999999999999999999999975   1   12236689999999999998  799999999999999


Q ss_pred             CCCCcceeEE--EeeccCCCeEEEEEccC-----CCEEEEEeCCCcEEEEeCC
Q 002641          840 GRGSILHLIQ--QIREHTKAVTGLAILQS-----GEMLYSGSLDKTARVRSND  885 (897)
Q Consensus       840 ~~~~~~~~i~--~l~gH~~~V~slafspd-----g~~L~SgS~D~tIrlWdi~  885 (897)
                      ......+.+.  ....+..+|+.++|.|-     +..++.|-..|.|.+|...
T Consensus       647 ~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  647 EPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             ccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            9876212222  34458899999999873     3367777789999999965

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.32  E-value=1.7e-06  Score=92.32  Aligned_cols=118  Identities=18%  Similarity=0.105  Sum_probs=100.4

Q ss_pred             ecccccccceeEeeecccccEEEEecCCCCeEEEeCC-----cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEe
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT  839 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd  839 (897)
                      +++..|...++.+.+++..++|++++.|....||...     +..-++..|+..+++|.|+|.  .|++||.-..|.||-
T Consensus        49 htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy  128 (361)
T KOG1523|consen   49 HTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCY  128 (361)
T ss_pred             eehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEE
Confidence            4667778888889999999999999999999999983     555667789999999999995  999999999999999


Q ss_pred             CCCCcc--eeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 002641          840 GRGSIL--HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSN  884 (897)
Q Consensus       840 ~~~~~~--~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi  884 (897)
                      ....+-  ...+.-+.++..|++++|+|++-.|+.||.|+.+|++..
T Consensus       129 ~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  129 YEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA  175 (361)
T ss_pred             EecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEE
Confidence            886541  122344568889999999999999999999999999863

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.32  E-value=3.7e-06  Score=100.82  Aligned_cols=109  Identities=23%  Similarity=0.264  Sum_probs=89.6

Q ss_pred             cccEEEEecCCCCeEEEeCC-----cceeeccCCCCc--EEEEEEeCC---EEEEEecCCeEEEEeCCCCcceeEEEeec
Q 002641          784 EMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGK--VLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIRE  853 (897)
Q Consensus       784 d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~--V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~i~~l~g  853 (897)
                      .|+.|+.|..||.|++||.+     -.+.+.+.|+..  |..+.+.+.   .|+|||.||.|++||++.......-+...
T Consensus      1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred             CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence            58899999999999999976     478888899887  999999873   79999999999999999842122333333


Q ss_pred             cC--C-CeEEEEEccCCCEEEEEeCCCcEEEEeCCCccceeee
Q 002641          854 HT--K-AVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIFI  893 (897)
Q Consensus       854 H~--~-~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l~~l~  893 (897)
                      |.  + ..+++..+++...++|||. +.|+||++.+..+..++
T Consensus      1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred             ccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccc
Confidence            43  3 5899999999999999998 99999999887665554

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=1.1e-07  Score=102.13  Aligned_cols=69  Identities=25%  Similarity=0.397  Sum_probs=60.7

Q ss_pred             CCCCcccccccccCCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCcccCC-CCCCcccHHHHHHHHHHH
Q 002641          159 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSS-TKLPKTNYVLKRLIASWQ  228 (897)
Q Consensus       159 ~l~~el~CpIC~~l~~dPV~l-~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~-~~~~~pN~~L~~li~~~~  228 (897)
                      .+..++.||||+++++..+++ .|+|.||+.||-.-+..++..||.||+.+.. ..+ +++.....+|.+.-
T Consensus        39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsL-r~Dp~fdaLis~i~  109 (381)
T KOG0311|consen   39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSL-RIDPNFDALISKIY  109 (381)
T ss_pred             HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccC-CCCccHHHHHHHHh
Confidence            577899999999999999988 8999999999999888889999999999754 455 78888888887764

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=98.29  E-value=2.2e-05  Score=103.08  Aligned_cols=194  Identities=13%  Similarity=0.201  Sum_probs=142.8

Q ss_pred             HHHHHHHHHHHhcc-CChHHHHHHHHHHHHhhhccHHHHHHhhhccchHHHHHHHHhcCc----hHHHHHHHHhCCChhh
Q 002641          312 PAVINGFVEILFNS-VDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGL----LEAVVLIDLLRPSTRT  386 (897)
Q Consensus       312 ~~a~~~~ke~L~~s-l~~~vlk~a~~~l~el~s~~e~~~~~i~~~~~~~~~i~~llk~~~----~ea~~LL~~L~~~~~~  386 (897)
                      ...+..+.+.|.+. ...+.-+.+...+.++.+.++..+..|....+.+.-++.+|++|.    ..|..+|..|...+++
T Consensus        12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~n   91 (2102)
T PLN03200         12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDL   91 (2102)
T ss_pred             HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHH
Confidence            34566777888763 345557777888888988888889999888999999999998873    3444488888888776


Q ss_pred             HHH---HhhHHHHHHHHHhhcchhhhhccCchhhHHHHHHhhhcCC-cccccccch-hhhccchhHHHHHHhhhcchHHH
Q 002641          387 LIE---MDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDS-EESIVSSIA-NTIVSSKVFESVISSLEAEWAEE  461 (897)
Q Consensus       387 i~~---~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~-d~~~~~~~~-~~~~s~~~~~~l~~~~~~~~~~~  461 (897)
                      ...   -+.+|.|+++|++++..      ...+||-+|+.....+. |+     |. ..++++|++|.|+..++.|+..+
T Consensus        92 k~~Iv~~GaIppLV~LL~sGs~e------aKe~AA~AL~sLS~~~~~D~-----~~~~I~v~~GaVp~Lv~lL~~gsk~d  160 (2102)
T PLN03200         92 RVKVLLGGCIPPLLSLLKSGSAE------AQKAAAEAIYAVSSGGLSDH-----VGSKIFSTEGVVPSLWDQLQPGNKQD  160 (2102)
T ss_pred             HHHHHHcCChHHHHHHHHCCCHH------HHHHHHHHHHHHHcCcchhh-----hhhhhhhhcCChHHHHHHHhCCchhh
Confidence            654   47788899999988655      56788888888776553 32     33 34568999999999999997655


Q ss_pred             HH--HHHHHHhhhccccCc-chhhHhhhcchhhHHHHHhhcCcchhHHHHHHHHHHHh
Q 002641          462 RI--AAVGILLRCMQEDGK-CRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVK  516 (897)
Q Consensus       462 ~~--~~~~il~~c~~~~~~-cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~~  516 (897)
                      ..  ..+...|+++..+.. .+..+.+...+.+++++|.+++...+++|+..|.-+..
T Consensus       161 ~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Las  218 (2102)
T PLN03200        161 KVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMM  218 (2102)
T ss_pred             HHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            42  111223333333333 44577899999999999999888889999887776643

>PHA02926 zinc finger-like protein; Provisional

Probab=98.28  E-value=4.5e-07  Score=92.17  Aligned_cols=51  Identities=18%  Similarity=0.359  Sum_probs=41.1

Q ss_pred             CCCCcccccccccCCCC---------ceecCCCcccchHHHHHHHhcC-----CCCCCCCCcccC
Q 002641          159 TPPKDFVCPITTHIFDD---------PVTLETGQTYERRAIQEWIERG-----NSSCPITRQKLS  209 (897)
Q Consensus       159 ~l~~el~CpIC~~l~~d---------PV~l~CGHtFCr~CI~~~~~~~-----~~~CP~Cr~~~~  209 (897)
                      ...++..|+||++...+         ++..+|+|+||..||.+|....     ...||.||..+.
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            35668999999998754         3566999999999999998742     245999999865

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.25  E-value=7.7e-07  Score=104.18  Aligned_cols=123  Identities=17%  Similarity=0.188  Sum_probs=96.8

Q ss_pred             cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCC-Cc
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRG-SI  844 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~-~~  844 (897)
                      .+.||..-+.-.+.+.+..+++++|.|..|++|.+.  ..+.++.||+|.|++++|+|-.  +.+.|||+++||.+- ..
T Consensus       227 s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~  304 (1113)
T KOG0644|consen  227 SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPR  304 (1113)
T ss_pred             cCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc--cCCCCCceEecccccccc
Confidence            355666666666666677789999999999999987  7889999999999999999955  788999999999880 00


Q ss_pred             --------------------------------------------------------------------------------
Q 002641          845 --------------------------------------------------------------------------------  844 (897)
Q Consensus       845 --------------------------------------------------------------------------------  844 (897)
                                                                                                      
T Consensus       305 ~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~  384 (1113)
T KOG0644|consen  305 IYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT  384 (1113)
T ss_pred             ccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeeccc
Confidence                                                                                            


Q ss_pred             ceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc-cceee
Q 002641          845 LHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       845 ~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~-~l~~l  892 (897)
                      +...+.+.||...++-+.|+|-. +...+++.||.+.|||+-.| ..+.+
T Consensus       385 g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y  434 (1113)
T KOG0644|consen  385 GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY  434 (1113)
T ss_pred             chhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee
Confidence            12233445788888889999854 66778999999999999888 54443

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.25  E-value=6.5e-07  Score=69.57  Aligned_cols=41  Identities=20%  Similarity=0.470  Sum_probs=34.8

Q ss_pred             cccccccCC---CCceecCCCcccchHHHHHHHhcCCCCCCCCCc
Q 002641          165 VCPITTHIF---DDPVTLETGQTYERRAIQEWIERGNSSCPITRQ  206 (897)
Q Consensus       165 ~CpIC~~l~---~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~  206 (897)
                      .|+||.+.+   ..|++++|||+||..|+.+.. .....||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence            389999999   357788999999999999977 34568999985

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.25  E-value=1.3e-05  Score=85.53  Aligned_cols=102  Identities=12%  Similarity=0.115  Sum_probs=84.0

Q ss_pred             cccEEEE-ecCCCCeEEEeCC-cc---eeeccCCCCcEEEEEEeCC--EEEEEecCCe-EEEEeCCCCcceeEEEeecc-
Q 002641          784 EMVKVLS-NGHDSSADFWNHR-EL---VHVDSSENGKVLSIACFRD--KIFSGHSDGT-IKVWTGRGSILHLIQQIREH-  854 (897)
Q Consensus       784 d~~~LaS-gs~DgtIklWd~~-~~---l~~l~gH~~~V~sV~fspd--~L~Sgs~Dgt-IrlWd~~~~~~~~i~~l~gH-  854 (897)
                      +...||- |-.-|.|+|-|+. ..   -..+..|.+.|.||+.+.+  ++||+|..|| |||||..++  ..+++++-- 
T Consensus       147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g--~~l~E~RRG~  224 (346)
T KOG2111|consen  147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG--TLLQELRRGV  224 (346)
T ss_pred             CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC--cEeeeeecCC
Confidence            3444554 5556999999987 22   3678899999999999975  9999999998 699999998  467777643 


Q ss_pred             -CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          855 -TKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       855 -~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                       ...|.|++|||++.+|+.+|.-||+.|+.++..
T Consensus       225 d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  225 DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             chheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence             346999999999999999999999999999874

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=2.2e-06  Score=103.96  Aligned_cols=112  Identities=13%  Similarity=0.200  Sum_probs=97.7

Q ss_pred             cceeEeeecccccEEEEecCCC---CeEEEeCC---cceeeccCCCCcEEEEEEeC-C--EEEEEecCCeEEEEeCCCCc
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDS---SADFWNHR---ELVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSI  844 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~Dg---tIklWd~~---~~l~~l~gH~~~V~sV~fsp-d--~L~Sgs~DgtIrlWd~~~~~  844 (897)
                      ....+.||..+...++.++.|.   .|.+||++   ..++++++|...|.++.|++ |  +++|++.|+.|-+|+..++ 
T Consensus       208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg-  286 (1049)
T KOG0307|consen  208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG-  286 (1049)
T ss_pred             ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc-
Confidence            3556778887788888777763   68999987   78889999999999999997 3  9999999999999999998 


Q ss_pred             ceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc
Q 002641          845 LHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       845 ~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~  887 (897)
                       +.+..+....+++..+.|+|.. ..++.+|.||.|-|+.+.++
T Consensus       287 -Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  287 -EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             -eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence             5788888888999999999975 58889999999999999876

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.22  E-value=5.4e-06  Score=87.35  Aligned_cols=105  Identities=18%  Similarity=0.189  Sum_probs=81.4

Q ss_pred             cEEEEecCCCCeEEEeCC------cceeecc-----CCCCcEEEEEEe---CCEEEEEecCCeEEEEeCCCCc-ceeEEE
Q 002641          786 VKVLSNGHDSSADFWNHR------ELVHVDS-----SENGKVLSIACF---RDKIFSGHSDGTIKVWTGRGSI-LHLIQQ  850 (897)
Q Consensus       786 ~~LaSgs~DgtIklWd~~------~~l~~l~-----gH~~~V~sV~fs---pd~L~Sgs~DgtIrlWd~~~~~-~~~i~~  850 (897)
                      .+|||.|  ..+|+|.+.      .+...+.     .+.+++++..|+   |+++.+.|-|-|..|||+.++. ......
T Consensus       114 dlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ  191 (364)
T KOG0290|consen  114 DLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ  191 (364)
T ss_pred             chhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence            4566654  578999875      1111121     246789999998   4599999999999999999872 234567


Q ss_pred             eeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCccceee
Q 002641          851 IREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSFTYAIF  892 (897)
Q Consensus       851 l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~~l~~l  892 (897)
                      +-.|.+.|..++|..+| +.|+|.|.||++|+||++.-...++
T Consensus       192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI  234 (364)
T KOG0290|consen  192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI  234 (364)
T ss_pred             EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE
Confidence            88999999999999866 7899999999999999998644443

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=6.2e-07  Score=101.22  Aligned_cols=51  Identities=27%  Similarity=0.505  Sum_probs=45.9

Q ss_pred             cccccccccCCCCceecCCCcccchHHHHHHHhcC----CCCCCCCCcccCCCCC
Q 002641          163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERG----NSSCPITRQKLSSTKL  213 (897)
Q Consensus       163 el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~----~~~CP~Cr~~~~~~~~  213 (897)
                      +..||||++-..-|+.+.|||.||..||.+||..+    ...||+|+..+..+.+
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl  240 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL  240 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence            78999999999999999999999999999999853    4579999999887665

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.21  E-value=3.8e-06  Score=94.66  Aligned_cols=111  Identities=12%  Similarity=0.086  Sum_probs=86.6

Q ss_pred             ceeEeeecccccEEEEecCCCCeEEEeCC------------------------------cceeeccCCCCcEEEEEEeCC
Q 002641          775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR------------------------------ELVHVDSSENGKVLSIACFRD  824 (897)
Q Consensus       775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~------------------------------~~l~~l~gH~~~V~sV~fspd  824 (897)
                      .....|...+...++.+-.+|...++|..                              ..+..+.-..+.|...+|+||
T Consensus       222 vT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D  301 (636)
T KOG2394|consen  222 VTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD  301 (636)
T ss_pred             eEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC
Confidence            33445555566677777788888888632                              011111123457888899998


Q ss_pred             --EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          825 --KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       825 --~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                        +||+.|.||.+||+|..+.  .++..++..-+...||+|||||++|++|+.|--|.||.+..+
T Consensus       302 G~~LA~VSqDGfLRvF~fdt~--eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er  364 (636)
T KOG2394|consen  302 GKYLATVSQDGFLRIFDFDTQ--ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER  364 (636)
T ss_pred             CceEEEEecCceEEEeeccHH--HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc
Confidence              9999999999999999987  466777777888999999999999999999999999998766

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.21  E-value=5.3e-07  Score=73.86  Aligned_cols=44  Identities=41%  Similarity=0.902  Sum_probs=31.1

Q ss_pred             CCcccccccccCCCCceec-CCCcccchHHHHHHHhc-CCCCCCCC
Q 002641          161 PKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIER-GNSSCPIT  204 (897)
Q Consensus       161 ~~el~CpIC~~l~~dPV~l-~CGHtFCr~CI~~~~~~-~~~~CP~C  204 (897)
                      .-.+.|||++..|.|||+. .|||+|++.+|.+|+.. +...||+.
T Consensus         9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~   54 (57)
T PF11789_consen    9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVA   54 (57)
T ss_dssp             B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCC
T ss_pred             EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCC
Confidence            3478999999999999985 99999999999999943 34579983

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.20  E-value=7.3e-06  Score=98.41  Aligned_cols=111  Identities=21%  Similarity=0.269  Sum_probs=82.7

Q ss_pred             eEeeecccccEEEEecCCCCeEEEeCC--cceeecc-CCCCcEEEEEEeC---CEEEEEecCCeEEEEeCCCCcc-eeEE
Q 002641          777 KYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDS-SENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSIL-HLIQ  849 (897)
Q Consensus       777 ~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~-gH~~~V~sV~fsp---d~L~Sgs~DgtIrlWd~~~~~~-~~i~  849 (897)
                      .+..+.....+|+++|.-..|+|||..  .+.+.+. +....|+++.-+-   ++++.|..||.||+||.+.... ..+.
T Consensus      1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred             eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence            333344444445555558999999987  3333333 3355677775542   4999999999999999996531 3578


Q ss_pred             EeeccCCC--eEEEEEccCC-CEEEEEeCCCcEEEEeCCCc
Q 002641          850 QIREHTKA--VTGLAILQSG-EMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       850 ~l~gH~~~--V~slafspdg-~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ..+.|+..  |..+.+.+.| ..|+|||.||.|++||++..
T Consensus      1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence            89999998  9999999877 45999999999999999985

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.19  E-value=4.5e-06  Score=91.59  Aligned_cols=103  Identities=21%  Similarity=0.157  Sum_probs=83.3

Q ss_pred             EEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEE-eeccCCCeEEEE
Q 002641          787 KVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ-IREHTKAVTGLA  862 (897)
Q Consensus       787 ~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~-l~gH~~~V~sla  862 (897)
                      .....++...+.+|... ......-||-+-++.|+|+||  +++++..|+.||+-.....  ..+.. +-||+.-|+.++
T Consensus       124 v~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~--f~IesfclGH~eFVS~is  201 (390)
T KOG3914|consen  124 VADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT--FVIESFCLGHKEFVSTIS  201 (390)
T ss_pred             EEeecCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc--cchhhhccccHhheeeee
Confidence            34445666788888876 566667799999999999998  9999999999998777654  23444 457999999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641          863 ILQSGEMLYSGSLDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       863 fspdg~~L~SgS~D~tIrlWdi~~~-~l~~l  892 (897)
                      .- +++.|+|||.|+++++||+++| ++.+|
T Consensus       202 l~-~~~~LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  202 LT-DNYLLLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             ec-cCceeeecCCCCcEEEEecccCCccccc
Confidence            95 4667999999999999999999 66554

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.19  E-value=4.6e-06  Score=98.29  Aligned_cols=119  Identities=13%  Similarity=0.055  Sum_probs=97.6

Q ss_pred             ccccccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCC
Q 002641          769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~  842 (897)
                      ...|...+..+..+|-+..++..+.|.+++||...   ..+..+..+...|++++|||.   .|+++..||.|.+||+..
T Consensus       394 ~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~  473 (555)
T KOG1587|consen  394 FITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ  473 (555)
T ss_pred             ccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence            34456777778888766655444449999999976   677777888888999999985   899999999999999997


Q ss_pred             CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       843 ~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ....++...+-+....+.+.|++.|+.|+.|...|++.+|++...
T Consensus       474 ~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  474 DDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             cccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            655667777667667788899999999999999999999999754

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.19  E-value=1.5e-05  Score=90.88  Aligned_cols=132  Identities=13%  Similarity=0.138  Sum_probs=95.6

Q ss_pred             CCceeeeecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC----EEEEEe---
Q 002641          760 DINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD----KIFSGH---  830 (897)
Q Consensus       760 ~~~~~i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd----~L~Sgs---  830 (897)
                      .......-++.||.+.+..+...+.|.+|+|||.||+|+||.+.  .++++++- .+.|.||+|+|.    .|+.+-   
T Consensus       387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~  465 (733)
T KOG0650|consen  387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGEC  465 (733)
T ss_pred             CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCc
Confidence            33355567889999999999999999999999999999999986  67766543 568999999984    333321   


Q ss_pred             -----------------------------cCCeEEEEeCCCCc--ceeEEEeeccCCCeEEEEEccCCCEEEEEeCC---
Q 002641          831 -----------------------------SDGTIKVWTGRGSI--LHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---  876 (897)
Q Consensus       831 -----------------------------~DgtIrlWd~~~~~--~~~i~~l~gH~~~V~slafspdg~~L~SgS~D---  876 (897)
                                                   -|+.+-.|.-....  -.-++..-.|.+.|..+.|+..|.+|++...|   
T Consensus       466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~  545 (733)
T KOG0650|consen  466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN  545 (733)
T ss_pred             eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence                                         12333445433110  01134555689999999999999999998765   


Q ss_pred             CcEEEEeCCCc-cceee
Q 002641          877 KTARVRSNDSF-TYAIF  892 (897)
Q Consensus       877 ~tIrlWdi~~~-~l~~l  892 (897)
                      +.|.|.++..+ ....|
T Consensus       546 ~~VliHQLSK~~sQ~PF  562 (733)
T KOG0650|consen  546 KSVLIHQLSKRKSQSPF  562 (733)
T ss_pred             ceEEEEecccccccCch
Confidence            47889998776 33444

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.17  E-value=3.2e-06  Score=94.96  Aligned_cols=120  Identities=13%  Similarity=0.156  Sum_probs=92.6

Q ss_pred             eeeecccccccceeEeeecccccEEEEecCCCCeEEEeCCcceee-ccCCCCcEEEEEEeCC---EEEEEecCCeEEEEe
Q 002641          764 HMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHV-DSSENGKVLSIACFRD---KIFSGHSDGTIKVWT  839 (897)
Q Consensus       764 ~i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~~l~~-l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd  839 (897)
                      +++.....|...+.+-.+++||.-++|++.||.|++|.-..+++. +.-...+|+|++|.|+   .+++.+..-.||  -
T Consensus        95 rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IK--p  172 (737)
T KOG1524|consen   95 RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIK--P  172 (737)
T ss_pred             hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEe--e
Confidence            344556667777777788999999999999999999997643333 3334678999999996   666655444444  4


Q ss_pred             CCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          840 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       840 ~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      +...  ..+-..+.|.+-|.++.|++..+.++||+.|-..++||--+.
T Consensus       173 L~~n--~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~  218 (737)
T KOG1524|consen  173 LAAN--SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA  218 (737)
T ss_pred             cccc--cceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc
Confidence            4433  235568999999999999999999999999999999997654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.16  E-value=9e-06  Score=87.47  Aligned_cols=137  Identities=14%  Similarity=0.181  Sum_probs=96.7

Q ss_pred             CCCCCceeeeecccccc---------cceeEeeecc--cccEEEEec----CCCCeEEEeCC---cceee-ccCCCCcEE
Q 002641          757 GLRDINIHMKDIMKGLR---------ELRKYSPLAF--EMVKVLSNG----HDSSADFWNHR---ELVHV-DSSENGKVL  817 (897)
Q Consensus       757 ~~~~~~~~i~~~l~~~~---------~~~~~~~~s~--d~~~LaSgs----~DgtIklWd~~---~~l~~-l~gH~~~V~  817 (897)
                      +..+.++++||+....+         ....+.-+..  .++.++.|.    .|-.+.+||++   +.+.. ...|...|+
T Consensus        90 ~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT  169 (376)
T KOG1188|consen   90 CSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVT  169 (376)
T ss_pred             eccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcce
Confidence            44566778887643311         1112222222  455666665    35678999998   43443 456999999


Q ss_pred             EEEEeC---CEEEEEecCCeEEEEeCCCCc-ceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc-ccee
Q 002641          818 SIACFR---DKIFSGHSDGTIKVWTGRGSI-LHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF-TYAI  891 (897)
Q Consensus       818 sV~fsp---d~L~Sgs~DgtIrlWd~~~~~-~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~-~l~~  891 (897)
                      +|.|+|   ++|+|||.||-|.|+|++... -..+.....|...|.++.|..++ +.|.+-+.+.+..+|++..+ +...
T Consensus       170 ~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~  249 (376)
T KOG1188|consen  170 QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW  249 (376)
T ss_pred             eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc
Confidence            999998   399999999999999998652 12233344588889999999887 56889999999999999988 5444


Q ss_pred             ee
Q 002641          892 FI  893 (897)
Q Consensus       892 l~  893 (897)
                      +.
T Consensus       250 ~~  251 (376)
T KOG1188|consen  250 LE  251 (376)
T ss_pred             cc
Confidence            43

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=9.5e-07  Score=92.06  Aligned_cols=53  Identities=19%  Similarity=0.402  Sum_probs=44.8

Q ss_pred             CCcccccccccCCCCceecCCCcccchHHHHH-HHhcCCCCCCCCCcccCCCCC
Q 002641          161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQE-WIERGNSSCPITRQKLSSTKL  213 (897)
Q Consensus       161 ~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~-~~~~~~~~CP~Cr~~~~~~~~  213 (897)
                      ..++.|+||++.+.+|+.++|||.||..||.. |-.+....||.||+......+
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v  266 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV  266 (271)
T ss_pred             ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence            56899999999999999999999999999999 555444469999988765443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.15  E-value=1.1e-05  Score=86.09  Aligned_cols=113  Identities=14%  Similarity=0.127  Sum_probs=99.4

Q ss_pred             cceeEeeecccccEEEEecCCCCeEEEeCC-----cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeC-CCCcc
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTG-RGSIL  845 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~-~~~~~  845 (897)
                      ....+-.++.|+..+|.+-....|.||...     +..++++.|...|+.|+|+|.  .|++|+.|.--.||.. ..+..
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W   90 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW   90 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence            445667788899999999999999999865     688999999999999999995  9999999999999999 55555


Q ss_pred             eeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641          846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDS  886 (897)
Q Consensus       846 ~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~  886 (897)
                      ++.-.+..|+.++++|.|+|.++.|+.||..+.|-||=...
T Consensus        91 kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~  131 (361)
T KOG1523|consen   91 KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ  131 (361)
T ss_pred             ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence            66677888999999999999999999999999999986654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.11  E-value=2e-05  Score=96.18  Aligned_cols=111  Identities=17%  Similarity=0.128  Sum_probs=81.2

Q ss_pred             eEeeecccccEEEEecCCCCeEEEeCCc---------ceeeccCCCCcEEEEEEeC--CEEEEEecCCeEEEEeCCCCc-
Q 002641          777 KYSPLAFEMVKVLSNGHDSSADFWNHRE---------LVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSI-  844 (897)
Q Consensus       777 ~~~~~s~d~~~LaSgs~DgtIklWd~~~---------~l~~l~gH~~~V~sV~fsp--d~L~Sgs~DgtIrlWd~~~~~-  844 (897)
                      .....++++.+++|||.||+||+||..+         ..-++....+.+.++.+.+  +.+|.|+.||.|++.++.-.+ 
T Consensus      1053 k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~ 1132 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV 1132 (1431)
T ss_pred             ceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc
Confidence            3333445679999999999999999862         2222323456777777665  599999999999999887511 


Q ss_pred             ------------------------------c-eeE--E-------------------EeeccCCCeEEEEEccCCCEEEE
Q 002641          845 ------------------------------L-HLI--Q-------------------QIREHTKAVTGLAILQSGEMLYS  872 (897)
Q Consensus       845 ------------------------------~-~~i--~-------------------~l~gH~~~V~slafspdg~~L~S  872 (897)
                                                    . ..+  .                   .+....+.|++++.+|.++++++
T Consensus      1133 ~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wlvi 1212 (1431)
T KOG1240|consen 1133 SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVI 1212 (1431)
T ss_pred             ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEE
Confidence                                          0 000  0                   01123568999999999999999


Q ss_pred             EeCCCcEEEEeCCCc
Q 002641          873 GSLDKTARVRSNDSF  887 (897)
Q Consensus       873 gS~D~tIrlWdi~~~  887 (897)
                      |+.-|.+.+||++=+
T Consensus      1213 Gts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1213 GTSRGQLVLWDLRFR 1227 (1431)
T ss_pred             ecCCceEEEEEeecC
Confidence            999999999999866

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.10  E-value=2.4e-05  Score=89.87  Aligned_cols=120  Identities=17%  Similarity=0.171  Sum_probs=89.9

Q ss_pred             ecccccccceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEe-----------------------
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACF-----------------------  822 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fs-----------------------  822 (897)
                      +++++|++.+.+++++.||+++|||+.|+.|.+|+-. +-+- --.|++.|.|+.|+                       
T Consensus        47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~  125 (1081)
T KOG1538|consen   47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS  125 (1081)
T ss_pred             cccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-eeccCCeeeEeecCchHHHhhhcchhhccccChhhhh
Confidence            5789999999999999999999999999999999965 1111 11344445544444                       


Q ss_pred             ----------------CC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCC-----CEEEEEeCCCcE
Q 002641          823 ----------------RD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG-----EMLYSGSLDKTA  879 (897)
Q Consensus       823 ----------------pd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg-----~~L~SgS~D~tI  879 (897)
                                      .|  +++-|..||||.+-+......-.+....|.+.+|++++|+|..     ..++...+..|+
T Consensus       126 V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL  205 (1081)
T KOG1538|consen  126 VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL  205 (1081)
T ss_pred             HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecccee
Confidence                            43  5666778999988876655323345556788899999999962     578888888899


Q ss_pred             EEEeCCCc
Q 002641          880 RVRSNDSF  887 (897)
Q Consensus       880 rlWdi~~~  887 (897)
                      .++.+.+.
T Consensus       206 SFy~LsG~  213 (1081)
T KOG1538|consen  206 SFYQLSGK  213 (1081)
T ss_pred             EEEEecce
Confidence            88887654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.09  E-value=3.3e-05  Score=84.05  Aligned_cols=109  Identities=16%  Similarity=0.180  Sum_probs=85.5

Q ss_pred             cccEEEEecCCCCeEEEeCC--cceeeccC---CCCcEEEEEEeCC--EEEE-EecC-CeEEEEeCCCCcceeEEEeecc
Q 002641          784 EMVKVLSNGHDSSADFWNHR--ELVHVDSS---ENGKVLSIACFRD--KIFS-GHSD-GTIKVWTGRGSILHLIQQIREH  854 (897)
Q Consensus       784 d~~~LaSgs~DgtIklWd~~--~~l~~l~g---H~~~V~sV~fspd--~L~S-gs~D-gtIrlWd~~~~~~~~i~~l~gH  854 (897)
                      +-++++..=.+. |.|||++  ++++++..   |...+.++.++.+  +++- ++.+ |.|.+||+.+-  +.+..+..|
T Consensus        96 Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--~~v~~I~aH  172 (391)
T KOG2110|consen   96 NRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--QPVNTINAH  172 (391)
T ss_pred             ccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc--eeeeEEEec
Confidence            455666664444 9999998  67776654   4455777766664  5544 4444 89999999886  688999999


Q ss_pred             CCCeEEEEEccCCCEEEEEeCCCc-EEEEeCCCc-cceeeecc
Q 002641          855 TKAVTGLAILQSGEMLYSGSLDKT-ARVRSNDSF-TYAIFIQV  895 (897)
Q Consensus       855 ~~~V~slafspdg~~L~SgS~D~t-IrlWdi~~~-~l~~l~~~  895 (897)
                      .+.+.+++|+++|.+|+++|..|| |||+.+.+| .+..|++-
T Consensus       173 ~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG  215 (391)
T KOG2110|consen  173 KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG  215 (391)
T ss_pred             CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC
Confidence            999999999999999999999885 689999999 77878764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.09  E-value=6.8e-06  Score=92.63  Aligned_cols=82  Identities=22%  Similarity=0.231  Sum_probs=70.5

Q ss_pred             cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccC--CCEEEEEeCCCcE
Q 002641          804 ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTA  879 (897)
Q Consensus       804 ~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspd--g~~L~SgS~D~tI  879 (897)
                      .....++||+|.|.|+.|+.|  +|+|||.|-.+-|||....+ .....-.||+..|.|++|-|.  .+.++||+.|+.|
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K-llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK-LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc-eeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            355668899999999999986  99999999999999998653 233445799999999999985  5789999999999


Q ss_pred             EEEeCCC
Q 002641          880 RVRSNDS  886 (897)
Q Consensus       880 rlWdi~~  886 (897)
                      +++|+..
T Consensus       120 ~lfdl~~  126 (758)
T KOG1310|consen  120 KLFDLDS  126 (758)
T ss_pred             EEEeccc
Confidence            9999984

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=98.08  E-value=1.7e-06  Score=92.92  Aligned_cols=67  Identities=16%  Similarity=0.362  Sum_probs=56.9

Q ss_pred             CCCCcccccccccCCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCcccCCCC----CCcccHHHHHHHHHH
Q 002641          159 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTK----LPKTNYVLKRLIASW  227 (897)
Q Consensus       159 ~l~~el~CpIC~~l~~dPV~l-~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~----~~~pN~~L~~li~~~  227 (897)
                      ++....+|++|..+|.||.++ .|=||||++||.+++.. ...||.|+..+....    + +++..|+.+|-++
T Consensus        11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni-~~DrtlqdiVyKL   82 (331)
T KOG2660|consen   11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNI-RSDRTLQDIVYKL   82 (331)
T ss_pred             hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccC-CcchHHHHHHHHH
Confidence            567788999999999999987 99999999999999997 668999998875443    4 6788888887654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=98.05  E-value=7.6e-05  Score=83.83  Aligned_cols=125  Identities=13%  Similarity=0.051  Sum_probs=94.7

Q ss_pred             CCCCCceeeeeccc-----ccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEE
Q 002641          757 GLRDINIHMKDIMK-----GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIF  827 (897)
Q Consensus       757 ~~~~~~~~i~~~l~-----~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~  827 (897)
                      +.++....+|+-.+     .......+.++.|.| .+|.|...|...+.|..  ..+..... +..+.+|+|+|+  +||
T Consensus       386 ~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lA  463 (626)
T KOG2106|consen  386 CGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLA  463 (626)
T ss_pred             ccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEE
Confidence            44666666765110     112445566777778 89999999999999987  33333333 889999999997  999


Q ss_pred             EEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 002641          828 SGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRS  883 (897)
Q Consensus       828 Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWd  883 (897)
                      .||.|+.|.+|.+..+.......-+.|..+|+.+.||+|++++.+-|.|..|-.|.
T Consensus       464 vgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  464 VGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             EecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            99999999999998553233344444558999999999999999999999999993

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=5.9e-06  Score=91.07  Aligned_cols=73  Identities=30%  Similarity=0.328  Sum_probs=63.9

Q ss_pred             EEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641          817 LSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       817 ~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l  892 (897)
                      .+|+|+++  .+++|+.||++|+|+....  ..+..+..|.+.|.++.|+|||+.|+|-+.| ..+||++.+| .++..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc--hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence            67888886  9999999999999997665  3566778899999999999999999999999 8999999998 55443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=1.6e-06  Score=102.49  Aligned_cols=55  Identities=15%  Similarity=0.349  Sum_probs=49.6

Q ss_pred             CCCCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCC
Q 002641          159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL  213 (897)
Q Consensus       159 ~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~  213 (897)
                      ....-++||.|..-++|.|++.|||.||..|+..........||.|+..|...++
T Consensus       639 ~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv  693 (698)
T KOG0978|consen  639 EYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV  693 (698)
T ss_pred             HHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence            3556789999999999999999999999999999888777799999999988776

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.02  E-value=1.1e-05  Score=60.38  Aligned_cols=35  Identities=40%  Similarity=0.523  Sum_probs=33.0

Q ss_pred             ceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEe
Q 002641          805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT  839 (897)
Q Consensus       805 ~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd  839 (897)
                      ++.++.+|.+.|++++|+|+  +++||+.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            57789999999999999997  999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=98.02  E-value=4.8e-05  Score=85.39  Aligned_cols=116  Identities=14%  Similarity=0.144  Sum_probs=94.0

Q ss_pred             cccccccceeEeeecccccEEEEecCCCCeEEEeCCcceeeccCCCCcEEEEEEeCC-EEEEEecCCeEEEEeCCCCcce
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILH  846 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~~l~~l~gH~~~V~sV~fspd-~L~Sgs~DgtIrlWd~~~~~~~  846 (897)
                      +..+|.+..+-...-++...+++++.|+.+++|+-.++..+.. -..++.|+.|+|. .++.|...|.--|.|..+.  .
T Consensus       363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~--~  439 (626)
T KOG2106|consen  363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKI-IEDPAECADFHPSGVVAVGTATGRWFVLDTETQ--D  439 (626)
T ss_pred             EEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEE-ecCceeEeeccCcceEEEeeccceEEEEecccc--e
Confidence            3455666666666677888999999999999999335444332 2567889999996 9999999999999999986  3


Q ss_pred             eEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       847 ~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      .+..-.. +..+++++|+|+|.+|+.||.|+.|.+|-+..+
T Consensus       440 lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  440 LVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             eEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence            4554444 889999999999999999999999999998754

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.02  E-value=2e-05  Score=90.50  Aligned_cols=111  Identities=18%  Similarity=0.290  Sum_probs=85.3

Q ss_pred             ceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCC-cc----
Q 002641          775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS-IL----  845 (897)
Q Consensus       775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~-~~----  845 (897)
                      .+.-+.+.|||..++.+. +..+.+||.+  ..+.+++||++.|+||+|+.|  .++||+.|..|-+|+-+-. .+    
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH   92 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH   92 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence            455577889999887764 4567799997  899999999999999999987  9999999999999987622 10    


Q ss_pred             -eeEEE--e-------------------------eccC--CCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641          846 -HLIQQ--I-------------------------REHT--KAVTGLAILQSGEMLYSGSLDKTARVRSNDS  886 (897)
Q Consensus       846 -~~i~~--l-------------------------~gH~--~~V~slafspdg~~L~SgS~D~tIrlWdi~~  886 (897)
                       ..++-  |                         .-|+  ..|.+++|..||.+|+-|-.||||.+-+-.+
T Consensus        93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g  163 (1081)
T KOG1538|consen   93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG  163 (1081)
T ss_pred             CCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence             00110  0                         0122  2577889999999999999999999887443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.00  E-value=7.4e-05  Score=77.45  Aligned_cols=91  Identities=11%  Similarity=0.164  Sum_probs=65.8

Q ss_pred             eEEEeCC---cceeeccC-CCCcEEEEEEeCC--E--EEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCC
Q 002641          797 ADFWNHR---ELVHVDSS-ENGKVLSIACFRD--K--IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE  868 (897)
Q Consensus       797 IklWd~~---~~l~~l~g-H~~~V~sV~fspd--~--L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~  868 (897)
                      ..+|.++   .....+.- ..+.|.+++|+|+  .  +++|..++.|.+||++.   ..+..+.  +..+..+.|+|+|+
T Consensus        39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---~~i~~~~--~~~~n~i~wsP~G~  113 (194)
T PF08662_consen   39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---KKIFSFG--TQPRNTISWSPDGR  113 (194)
T ss_pred             EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---cEeEeec--CCCceEEEECCCCC
Confidence            4455543   34444433 3567999999996  4  44566788999999974   3556664  56788999999999


Q ss_pred             EEEEEeCC---CcEEEEeCCCc-cceee
Q 002641          869 MLYSGSLD---KTARVRSNDSF-TYAIF  892 (897)
Q Consensus       869 ~L~SgS~D---~tIrlWdi~~~-~l~~l  892 (897)
                      +++.|+.+   |.+.+||+++. .+..+
T Consensus       114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~  141 (194)
T PF08662_consen  114 FLVLAGFGNLNGDLEFWDVRKKKKISTF  141 (194)
T ss_pred             EEEEEEccCCCcEEEEEECCCCEEeecc
Confidence            99999854   56999999976 54444

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.99  E-value=5e-05  Score=84.53  Aligned_cols=120  Identities=9%  Similarity=0.018  Sum_probs=87.4

Q ss_pred             cceeEeeecccccEEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcce
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILH  846 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~  846 (897)
                      ....++.|-|....+++++.|++++||.++    ..++.+.-...+|.+..|.|+   .++++|.-.....||+.+.+..
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~  293 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT  293 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccc
Confidence            445566666777788888888888888876    344444444678888888885   7888888888888888765411


Q ss_pred             eE-----------E-----------Eeec--------------------cCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 002641          847 LI-----------Q-----------QIRE--------------------HTKAVTGLAILQSGEMLYSGSLDKTARVRSN  884 (897)
Q Consensus       847 ~i-----------~-----------~l~g--------------------H~~~V~slafspdg~~L~SgS~D~tIrlWdi  884 (897)
                      .+           .           .+.|                    -.+.|+.+.|+.||+.|+..+.+|.|.+||+
T Consensus       294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl  373 (514)
T KOG2055|consen  294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNL  373 (514)
T ss_pred             cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEec
Confidence            00           1           1112                    1346888999999999999999999999999


Q ss_pred             CCc-cceeee
Q 002641          885 DSF-TYAIFI  893 (897)
Q Consensus       885 ~~~-~l~~l~  893 (897)
                      +.. ++.+|.
T Consensus       374 ~~~~~~~rf~  383 (514)
T KOG2055|consen  374 RQNSCLHRFV  383 (514)
T ss_pred             CCcceEEEEe
Confidence            988 666654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=97.98  E-value=1.9e-05  Score=82.48  Aligned_cols=110  Identities=21%  Similarity=0.308  Sum_probs=86.0

Q ss_pred             EEEEecCCCCeEEEeCC------------cceeeccCCCCcEEEEEEeC--CEEEEEecCCeEEEEeCCCC--cceeEEE
Q 002641          787 KVLSNGHDSSADFWNHR------------ELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGS--ILHLIQQ  850 (897)
Q Consensus       787 ~LaSgs~DgtIklWd~~------------~~l~~l~gH~~~V~sV~fsp--d~L~Sgs~DgtIrlWd~~~~--~~~~i~~  850 (897)
                      .++.|..+|.+-+||+.            +.......|..+|.++.|.+  +.=++|+.|..+-.|++...  ..+.-..
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e  246 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE  246 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence            46778889999999986            23444557999999999987  47888999999999998743  2222222


Q ss_pred             eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeeccc
Q 002641          851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQVV  896 (897)
Q Consensus       851 l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~~  896 (897)
                      ..-.+-.|..+.+-||++.++|+++|+.||||+.++. .+.+|+.+.
T Consensus       247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs  293 (323)
T KOG0322|consen  247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS  293 (323)
T ss_pred             EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh
Confidence            3333446888999999999999999999999999998 888877653

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=97.93  E-value=3e-05  Score=87.41  Aligned_cols=99  Identities=15%  Similarity=0.132  Sum_probs=80.0

Q ss_pred             cccccceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCcceeE
Q 002641          770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLI  848 (897)
Q Consensus       770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i  848 (897)
                      +.|.+++-.+.+++..+.|+||+.|-..++||.. ..+.+-..|..+|++|+|+||.++.-++-++.|+           
T Consensus       183 kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~-----------  251 (737)
T KOG1524|consen  183 RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARF-----------  251 (737)
T ss_pred             eccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccccceeeeeeeeeee-----------
Confidence            3455677778888889999999999999999976 8888888999999999999995554444455552           


Q ss_pred             EEeeccCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 002641          849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARV  881 (897)
Q Consensus       849 ~~l~gH~~~V~slafspdg~~L~SgS~D~tIrl  881 (897)
                        -+...+.|..++||+||..++.|...|.+.+
T Consensus       252 --~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  252 --SSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             --cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence              1235678999999999999999999887764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.87  E-value=9.9e-05  Score=82.25  Aligned_cols=109  Identities=17%  Similarity=0.245  Sum_probs=88.7

Q ss_pred             ceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEE
Q 002641          775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ  850 (897)
Q Consensus       775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~  850 (897)
                      ......+++++.+|+..|..|.|.|....  +.+.+++ -.+.|..++|+.|  .|+.++.+|.|.+||++..  .+++.
T Consensus       305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~--~~~~r  381 (514)
T KOG2055|consen  305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN--SCLHR  381 (514)
T ss_pred             hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCc--ceEEE
Confidence            44555678899999999999999998866  5555543 3688999999987  8888888999999999998  57888


Q ss_pred             eeccCC-CeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641          851 IREHTK-AVTGLAILQSGEMLYSGSLDKTARVRSNDS  886 (897)
Q Consensus       851 l~gH~~-~V~slafspdg~~L~SgS~D~tIrlWdi~~  886 (897)
                      |....+ .-++++.+++|.+|++||..|.|.|||..+
T Consensus       382 f~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  382 FVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             EeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence            775433 236778889999999999999999999654

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=9.9e-06  Score=91.42  Aligned_cols=72  Identities=19%  Similarity=0.409  Sum_probs=58.9

Q ss_pred             CCCCCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCC----CCcccHHHHHHHHHHHHh
Q 002641          158 HTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK----LPKTNYVLKRLIASWQEQ  230 (897)
Q Consensus       158 ~~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~----~~~pN~~L~~li~~~~~~  230 (897)
                      ..+..+|.|-||...+.+||+++|||+||..||.+.+. ....||.||..+....    ...+|+.+..+|.+|+..
T Consensus        79 ~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~  154 (398)
T KOG4159|consen   79 EEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG  154 (398)
T ss_pred             ccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence            36789999999999999999999999999999999777 4568999999876422    112377777888888764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.84  E-value=0.0001  Score=85.89  Aligned_cols=110  Identities=13%  Similarity=0.064  Sum_probs=78.7

Q ss_pred             ccccceeEeeecccccEEEEecCC---CCeEEEeCC----cceeeccCCCCcEEEEEEeCC--EEEEE-ecCCeEEEE--
Q 002641          771 GLRELRKYSPLAFEMVKVLSNGHD---SSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSG-HSDGTIKVW--  838 (897)
Q Consensus       771 ~~~~~~~~~~~s~d~~~LaSgs~D---gtIklWd~~----~~l~~l~gH~~~V~sV~fspd--~L~Sg-s~DgtIrlW--  838 (897)
                      .+...+....++|||++|+..+.+   ..|.+||+.    +.+..+.+|   ..+++|+||  .|+.+ +.||.+.||  
T Consensus       201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~  277 (429)
T PRK01742        201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVM  277 (429)
T ss_pred             cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEE
Confidence            344556677789999999987754   369999986    233334444   346899997  56655 568877666  


Q ss_pred             eCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCC
Q 002641          839 TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVRSNDS  886 (897)
Q Consensus       839 d~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS-~D~tIrlWdi~~  886 (897)
                      |+.++.   ...+..|...+.+..|+|||+.|+.++ .++..+||++..
T Consensus       278 d~~~~~---~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~  323 (429)
T PRK01742        278 GANGGT---PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA  323 (429)
T ss_pred             ECCCCC---eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            555553   455667777888999999999877665 578889998754

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.83  E-value=8e-05  Score=86.70  Aligned_cols=96  Identities=15%  Similarity=0.054  Sum_probs=71.0

Q ss_pred             CCCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEecC---CeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCC
Q 002641          794 DSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSD---GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG  867 (897)
Q Consensus       794 DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~D---gtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg  867 (897)
                      +..|.+||.+ .....+..|...+.++.|+||  .|+.++.+   ..|++||+.++....+..+.+|..   .++|+|||
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~---~~~wSPDG  259 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG---APAFSPDG  259 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC---ceeECCCC
Confidence            5789999987 445667888889999999998  67776654   479999999875444555666543   67999999


Q ss_pred             CEEEEEe-CCCcEEEE--eCCCccceee
Q 002641          868 EMLYSGS-LDKTARVR--SNDSFTYAIF  892 (897)
Q Consensus       868 ~~L~SgS-~D~tIrlW--di~~~~l~~l  892 (897)
                      +.|+.++ .||.+.||  |+.++....+
T Consensus       260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~l  287 (429)
T PRK01742        260 SRLAFASSKDGVLNIYVMGANGGTPSQL  287 (429)
T ss_pred             CEEEEEEecCCcEEEEEEECCCCCeEee
Confidence            9888765 68877666  6666644333

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.82  E-value=3.7e-05  Score=82.87  Aligned_cols=75  Identities=19%  Similarity=0.196  Sum_probs=65.8

Q ss_pred             cccccccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCC
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~  842 (897)
                      ...+|...+.+.++.+....+.||+.|..+.+||+.   .....+.+|.+.|..+.+-+-  .++|++.||.|-+||.+.
T Consensus       192 ~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  192 TFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             EEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            456777888888888888899999999999999987   667778899999999988764  999999999999999874

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=97.82  E-value=0.0001  Score=87.87  Aligned_cols=127  Identities=17%  Similarity=0.128  Sum_probs=91.4

Q ss_pred             ecccccccceeEeeecccccEEEEecCCCCeEEEeCCcceeecc------CCCCcEEEEEEeCC--EEEEEecCCeEEEE
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDS------SENGKVLSIACFRD--KIFSGHSDGTIKVW  838 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~~l~~l~------gH~~~V~sV~fspd--~L~Sgs~DgtIrlW  838 (897)
                      +++..++. ...+...+.|.+... -.+..+.+|+..+..+...      .|.-.++++++||+  ++++|..||.|.+|
T Consensus       155 d~~~~~~~-~~~I~~~~~ge~~~i-~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw  232 (792)
T KOG1963|consen  155 DFLKEHQE-PKSIVDNNSGEFKGI-VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVW  232 (792)
T ss_pred             hhhhhhcC-CccEEEcCCceEEEE-EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEE
Confidence            34444333 333444444443332 3466777888762112222      36667899999996  99999999999999


Q ss_pred             eCCC--CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCccceeeecc
Q 002641          839 TGRG--SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIFIQV  895 (897)
Q Consensus       839 d~~~--~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l~~l~~~  895 (897)
                      .-..  +.....+.++-|...|.+++|+++|.+|+|||..|-+-+|.+.++..+-|+++
T Consensus       233 ~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRL  291 (792)
T KOG1963|consen  233 RDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRL  291 (792)
T ss_pred             eccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccccccc
Confidence            7654  32244677899999999999999999999999999999999999976666654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.81  E-value=0.00025  Score=76.06  Aligned_cols=135  Identities=14%  Similarity=0.140  Sum_probs=92.6

Q ss_pred             CceeeeecccccccceeEeeecc------cccEEEEecCCCCeEEEeCC---cceeeccCCC--CcEEEEEEeCC--EEE
Q 002641          761 INIHMKDIMKGLRELRKYSPLAF------EMVKVLSNGHDSSADFWNHR---ELVHVDSSEN--GKVLSIACFRD--KIF  827 (897)
Q Consensus       761 ~~~~i~~~l~~~~~~~~~~~~s~------d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~--~~V~sV~fspd--~L~  827 (897)
                      +...+||-++. +....+...++      ...+|+.. .+..|.||.+.   +.++.+..-.  ....+++-+-+  .|+
T Consensus        75 NkviIWDD~k~-~~i~el~f~~~I~~V~l~r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~La  152 (346)
T KOG2111|consen   75 NKVIIWDDLKE-RCIIELSFNSEIKAVKLRRDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLA  152 (346)
T ss_pred             ceEEEEecccC-cEEEEEEeccceeeEEEcCCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEE
Confidence            33788886555 33333322222      34445544 57899999987   4555554432  23444433333  444


Q ss_pred             -EEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCc-EEEEeCCCc-cceeeecccC
Q 002641          828 -SGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT-ARVRSNDSF-TYAIFIQVVD  897 (897)
Q Consensus       828 -Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~t-IrlWdi~~~-~l~~l~~~~d  897 (897)
                       -|-.-|.|+|-|+..........+..|...|.|++.+.+|..++|+|..|| |||||..+| .++.|++-+|
T Consensus       153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d  225 (346)
T KOG2111|consen  153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD  225 (346)
T ss_pred             cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc
Confidence             455569999999987642235778899999999999999999999999986 789999999 8888887654

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=97.81  E-value=0.00082  Score=88.87  Aligned_cols=280  Identities=14%  Similarity=0.146  Sum_probs=180.7

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHhhhccHHHHHHhhhccchHHHHHHHHhcC----chHHHHHHHHhCCChhhHH-
Q 002641          314 VINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLI-  388 (897)
Q Consensus       314 a~~~~ke~L~~sl~~~vlk~a~~~l~el~s~~e~~~~~i~~~~~~~~~i~~llk~~----~~ea~~LL~~L~~~~~~i~-  388 (897)
                      ++..+.+.|.+. +.++.+.+...+..+-..++..+..|.+. +.+..++.+|+++    .++|+..|..|.-...|+. 
T Consensus       447 gIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIiea-GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~  524 (2102)
T PLN03200        447 GVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAA-GGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA  524 (2102)
T ss_pred             cHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence            456666666654 34556677777766666666666666654 5799999999876    6788889999998666533 


Q ss_pred             ---HHhhHHHHHHHHHhhcchhhhhccCchhhHHHHHHhhh--------------cCCcccccccchh------------
Q 002641          389 ---EMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMI--------------GDSEESIVSSIAN------------  439 (897)
Q Consensus       389 ---~~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l--------------~~~d~~~~~~~~~------------  439 (897)
                         ..+.+|.|+++|++++.+      .-+.|+-+|...+-              .+-| .....++-            
T Consensus       525 iV~~aGAIppLV~LL~sgd~~------~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd-~~~~~~aL~vLgnIlsl~~~  597 (2102)
T PLN03200        525 CVESAGAVPALLWLLKNGGPK------GQEIAAKTLTKLVRTADAATISQLTALLLGDL-PESKVHVLDVLGHVLSVASL  597 (2102)
T ss_pred             HHHHCCCHHHHHHHHhCCCHH------HHHHHHHHHHHHHhccchhHHHHHHHHhcCCC-hhHHHHHHHHHHHHHhhcch
Confidence               347899999999988654      12444444443321              1111 00001100            


Q ss_pred             ------hhccchhHHHHHHhhhcchHHHHHHHHHHHhhhccccCcchhhHhhhcchhhHHHHHhhcCcchhHHHHHHHHH
Q 002641          440 ------TIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSE  513 (897)
Q Consensus       440 ------~~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~e  513 (897)
                            -....||++.|++.+++|+.+.+..|+.+|...-.-..+-+..+.+...+.|++.+|..+++..+.++-..|.-
T Consensus       598 ~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~n  677 (2102)
T PLN03200        598 EDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAA  677 (2102)
T ss_pred             hHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHH
Confidence                  01246899999999999999999999999976555555656779999999999999999988888888777777


Q ss_pred             HHhhchhhhhHHHHHHhhccCccchhhHHHHHHHhcCcCCcchHHHHHHhhhhhcCcccc-cccHHHHHHHHHHHhhcCC
Q 002641          514 LVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKM-SIYREEAIDTLISCLRNSD  592 (897)
Q Consensus       514 l~~~~r~~~~~~~l~~i~~~g~~~~m~~l~~~l~~~~~~~~~~~a~lllqld~l~~~~~~-s~~reea~~~~~~~l~~~~  592 (897)
                      |....+....   ...+ +.|.+.   .|...|.....+-.-.++.-|  --++.++... .+-.+.++..|++-|+ +.
T Consensus       678 L~~~~~~~q~---~~~v-~~GaV~---pL~~LL~~~d~~v~e~Al~AL--anLl~~~e~~~ei~~~~~I~~Lv~lLr-~G  747 (2102)
T PLN03200        678 LSRSIKENRK---VSYA-AEDAIK---PLIKLAKSSSIEVAEQAVCAL--ANLLSDPEVAAEALAEDIILPLTRVLR-EG  747 (2102)
T ss_pred             HHhCCCHHHH---HHHH-HcCCHH---HHHHHHhCCChHHHHHHHHHH--HHHHcCchHHHHHHhcCcHHHHHHHHH-hC
Confidence            7765543322   1223 344432   244444433222211111111  1233334322 2335778888888887 44


Q ss_pred             chHHHHHHHHHHHhcccccc
Q 002641          593 YPAAQLAAAKTIVSLQGRFT  612 (897)
Q Consensus       593 ~~~~q~~~~~~l~~l~g~~s  612 (897)
                      .+++++.|+.||..|.-+|+
T Consensus       748 ~~~~k~~Aa~AL~~L~~~~~  767 (2102)
T PLN03200        748 TLEGKRNAARALAQLLKHFP  767 (2102)
T ss_pred             ChHHHHHHHHHHHHHHhCCC
Confidence            57889999999988776665

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.81  E-value=0.0001  Score=80.74  Aligned_cols=102  Identities=16%  Similarity=0.161  Sum_probs=91.4

Q ss_pred             ccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeE
Q 002641          785 MVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT  859 (897)
Q Consensus       785 ~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~  859 (897)
                      ...+|++..-+.+++||+.   +++..+.--..+++++...|+  ++++|-.-|.+..+|++++. ...+.++|-++.|+
T Consensus       216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k-l~g~~~kg~tGsir  294 (412)
T KOG3881|consen  216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK-LLGCGLKGITGSIR  294 (412)
T ss_pred             CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCce-eeccccCCccCCcc
Confidence            5679999999999999987   677777777889999999885  99999999999999999984 33455999999999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          860 GLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       860 slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ++..+|.+.+++|+|.|+.+||+|+.+.
T Consensus       295 sih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  295 SIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             eEEEcCCCceEEeeccceeEEEeecccc
Confidence            9999999999999999999999999984

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.80  E-value=2.1e-05  Score=68.18  Aligned_cols=39  Identities=26%  Similarity=0.762  Sum_probs=32.0

Q ss_pred             ccccccCCCCc------------e-ecCCCcccchHHHHHHHhcCCCCCCCCC
Q 002641          166 CPITTHIFDDP------------V-TLETGQTYERRAIQEWIERGNSSCPITR  205 (897)
Q Consensus       166 CpIC~~l~~dP------------V-~l~CGHtFCr~CI~~~~~~~~~~CP~Cr  205 (897)
                      |+||++-|.+|            + ..+|||.|...||.+|+... .+||+||
T Consensus        22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR   73 (73)
T PF12678_consen   22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN-NTCPLCR   73 (73)
T ss_dssp             ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS-SB-TTSS
T ss_pred             ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC-CcCCCCC
Confidence            99999999544            2 34899999999999999854 4999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.79  E-value=0.00032  Score=76.25  Aligned_cols=108  Identities=12%  Similarity=0.163  Sum_probs=76.3

Q ss_pred             cceeEeeeccc-ccEEEEecCCCCeEEEeCC------cc--------eee--ccCCCCcEEEEEEeCC--EEEEEec-CC
Q 002641          774 ELRKYSPLAFE-MVKVLSNGHDSSADFWNHR------EL--------VHV--DSSENGKVLSIACFRD--KIFSGHS-DG  833 (897)
Q Consensus       774 ~~~~~~~~s~d-~~~LaSgs~DgtIklWd~~------~~--------l~~--l~gH~~~V~sV~fspd--~L~Sgs~-Dg  833 (897)
                      ..+.+..+-|. +.-++.|.. +-|.+|...      ..        ...  ..|| ..|+++.|++|  .++++|. |.
T Consensus       141 rnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gss  218 (445)
T KOG2139|consen  141 RNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSS  218 (445)
T ss_pred             cceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcc
Confidence            44555555554 455666654 567789865      11        111  1233 68999999998  7777775 58


Q ss_pred             eEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641          834 TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSND  885 (897)
Q Consensus       834 tIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~  885 (897)
                      .|.+||..++...++.  .--.+.++-+.|||||.+|+.++.|+..++|+..
T Consensus       219 si~iWdpdtg~~~pL~--~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~  268 (445)
T KOG2139|consen  219 SIMIWDPDTGQKIPLI--PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN  268 (445)
T ss_pred             eEEEEcCCCCCccccc--ccCCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence            8999999998533332  2234578899999999999999999999999643

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.79  E-value=0.00025  Score=82.70  Aligned_cols=118  Identities=10%  Similarity=-0.022  Sum_probs=86.2

Q ss_pred             ccccceeEeeecccccEEEEecC---CCCeEEEeCC-cceeeccCCCCcEEEEEEeCC---EEEEEecCCe--EEEEeCC
Q 002641          771 GLRELRKYSPLAFEMVKVLSNGH---DSSADFWNHR-ELVHVDSSENGKVLSIACFRD---KIFSGHSDGT--IKVWTGR  841 (897)
Q Consensus       771 ~~~~~~~~~~~s~d~~~LaSgs~---DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd---~L~Sgs~Dgt--IrlWd~~  841 (897)
                      .+...+....+++||++|+..+.   +..|.+||+. .....+..+.+.+.+..|+||   ++++.+.||.  |.+||+.
T Consensus       199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~  278 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR  278 (435)
T ss_pred             cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence            33456667778899999888764   4689999987 444556667778889999997   4567777766  6677888


Q ss_pred             CCcceeEEEeeccCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCcccee
Q 002641          842 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DK--TARVRSNDSFTYAI  891 (897)
Q Consensus       842 ~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~-D~--tIrlWdi~~~~l~~  891 (897)
                      ++.   ...+..|........|+|||+.|+..+. ++  .|.+||+.++..+.
T Consensus       279 ~~~---~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~  328 (435)
T PRK05137        279 SGT---TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR  328 (435)
T ss_pred             CCc---eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE
Confidence            774   4556667667788999999998887763 33  67888887774433

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.78  E-value=0.00016  Score=82.88  Aligned_cols=111  Identities=17%  Similarity=0.178  Sum_probs=97.2

Q ss_pred             cccccEEEEecCCCCeEEEeCC--cceeecc--CCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccC
Q 002641          782 AFEMVKVLSNGHDSSADFWNHR--ELVHVDS--SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHT  855 (897)
Q Consensus       782 s~d~~~LaSgs~DgtIklWd~~--~~l~~l~--gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~  855 (897)
                      +.+...++-|...|.|.++++.  +....+.  +|.+.|.++.++.+  .|.|++.|+.+-+|+.+..  +.++.+++.+
T Consensus        67 s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~--~~~~~~~~~~  144 (541)
T KOG4547|consen   67 SLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK--VIIRIWKEQK  144 (541)
T ss_pred             cCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc--eeeeeeccCC
Confidence            3356678889999999999986  5555555  58999999999986  9999999999999999987  5889999999


Q ss_pred             CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeeccc
Q 002641          856 KAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQVV  896 (897)
Q Consensus       856 ~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~~  896 (897)
                      ..+.++..+|||..+++||  ++|++||+.++ .+.+|..+.
T Consensus       145 ~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~  184 (541)
T KOG4547|consen  145 PLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHG  184 (541)
T ss_pred             CccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCC
Confidence            9999999999999999998  69999999999 788888764

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.77  E-value=6e-05  Score=81.30  Aligned_cols=100  Identities=19%  Similarity=0.236  Sum_probs=85.7

Q ss_pred             EEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEE
Q 002641          787 KVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG  860 (897)
Q Consensus       787 ~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~s  860 (897)
                      +...|...|.|.+-.+.    .++.++.+|.+.+.+++|.|.  .++||+.|..|-+||+-... -....+.||.+.|..
T Consensus       167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~-g~~~el~gh~~kV~~  245 (404)
T KOG1409|consen  167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK-GTAYELQGHNDKVQA  245 (404)
T ss_pred             EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc-ceeeeeccchhhhhh
Confidence            55566667777665543    789999999999999999985  99999999999999998664 346788999999999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          861 LAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       861 lafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      +...+.-+.++|++.||.|-+||++..
T Consensus       246 l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  246 LSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             hhhhhhheeeeeccCCCeEEEEeccce
Confidence            998888899999999999999999754

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=97.76  E-value=0.00015  Score=85.73  Aligned_cols=105  Identities=18%  Similarity=0.184  Sum_probs=79.9

Q ss_pred             ecccccEEEEecCCCCeEEEeCCcc----ee----eccCCCCcEEEEEEeCC----EEEEEecCCeEEEEeCCCCc----
Q 002641          781 LAFEMVKVLSNGHDSSADFWNHREL----VH----VDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGSI----  844 (897)
Q Consensus       781 ~s~d~~~LaSgs~DgtIklWd~~~~----l~----~l~gH~~~V~sV~fspd----~L~Sgs~DgtIrlWd~~~~~----  844 (897)
                      ...+...++.|.++|.|-+||+...    ..    ....|..+|+.+.|-.+    -|+|+|.||.|..|+++.-.    
T Consensus       251 ~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e  330 (555)
T KOG1587|consen  251 CPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVE  330 (555)
T ss_pred             ccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchh
Confidence            3447889999999999999998721    11    22358899999999754    69999999999999877422    


Q ss_pred             -----------------------------------------------------c----eeEEEeeccCCCeEEEEEccCC
Q 002641          845 -----------------------------------------------------L----HLIQQIREHTKAVTGLAILQSG  867 (897)
Q Consensus       845 -----------------------------------------------------~----~~i~~l~gH~~~V~slafspdg  867 (897)
                                                                           .    +....+..|.+.|+++.++|-+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~  410 (555)
T KOG1587|consen  331 GLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY  410 (555)
T ss_pred             hcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCc
Confidence                                                                 1    1123455678899999999988


Q ss_pred             CEEEEEeCCCcEEEEeCC
Q 002641          868 EMLYSGSLDKTARVRSND  885 (897)
Q Consensus       868 ~~L~SgS~D~tIrlWdi~  885 (897)
                      ..++..+.|.++|+|.-.
T Consensus       411 ~k~fls~gDW~vriWs~~  428 (555)
T KOG1587|consen  411 PKNFLSVGDWTVRIWSED  428 (555)
T ss_pred             cceeeeeccceeEecccc
Confidence            666666669999999876

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=97.75  E-value=5.6e-05  Score=84.68  Aligned_cols=122  Identities=12%  Similarity=0.075  Sum_probs=101.7

Q ss_pred             eecccccccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC----EEEEEecCCeEEEE
Q 002641          766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVW  838 (897)
Q Consensus       766 ~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd----~L~Sgs~DgtIrlW  838 (897)
                      ..-+.+|.+.++.+.|...|..++|||.|..|.+||+.   ..+.-..||...|+.-.|-|.    .+++++.||.||+=
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            34567788899999999999999999999999999986   455555689999999999883    89999999999998


Q ss_pred             eCCCCc-ceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc
Q 002641          839 TGRGSI-LHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       839 d~~~~~-~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~  887 (897)
                      .+.... ..-...+..|.+.|.-++.-|+. ..|.|+|.|+.+.-.|++.+
T Consensus       215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~  265 (559)
T KOG1334|consen  215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD  265 (559)
T ss_pred             eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccC
Confidence            876432 11133456799999999999975 78999999999999999887

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.72  E-value=0.00021  Score=82.05  Aligned_cols=113  Identities=14%  Similarity=0.108  Sum_probs=95.9

Q ss_pred             cccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcc
Q 002641          770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL  845 (897)
Q Consensus       770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~  845 (897)
                      .+|...++..-.+.+...|.|++.|+.+..|+..  +.+..+++.+..+.+++++||  +++++|  +.|++||+.+.  
T Consensus        99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k--  174 (541)
T KOG4547|consen   99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK--  174 (541)
T ss_pred             CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCc--
Confidence            4566677777777778889999999999999987  788888899999999999999  888776  68999999998  


Q ss_pred             eeEEEeeccCCCeEEEEEccC-----CCEEEEE-eCCCcEEEEeCCC
Q 002641          846 HLIQQIREHTKAVTGLAILQS-----GEMLYSG-SLDKTARVRSNDS  886 (897)
Q Consensus       846 ~~i~~l~gH~~~V~slafspd-----g~~L~Sg-S~D~tIrlWdi~~  886 (897)
                      +.+.+|.||.+.|++++|-.+     |.++.++ ..+.-|.+|-+..
T Consensus       175 evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  175 EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            589999999999999999776     6666655 5677788998765

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=2.8e-05  Score=80.54  Aligned_cols=77  Identities=31%  Similarity=0.460  Sum_probs=71.6

Q ss_pred             CCCCCCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHHHHhCCCC
Q 002641          157 KHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGG  234 (897)
Q Consensus       157 ~~~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~~~~~~~~  234 (897)
                      +.++|+.+.|.|..++|++||+++.|-||.|.-|.+++..-+..-|++|.++....++ ||..|+..|..|...+.+.
T Consensus       205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~i-pN~alkevIa~fl~~n~w~  281 (284)
T KOG4642|consen  205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLI-PNLALKEVIAAFLKENEWA  281 (284)
T ss_pred             cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhc-cchHHHHHHHHHHHhcccc
Confidence            3489999999999999999999999999999999999997777899999999999996 9999999999999988764

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=97.71  E-value=0.00015  Score=86.43  Aligned_cols=117  Identities=13%  Similarity=0.121  Sum_probs=95.5

Q ss_pred             ecccccccceeEeeecccccEEEEecCCCCeEEEe-CC-----cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEE
Q 002641          767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWN-HR-----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVW  838 (897)
Q Consensus       767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd-~~-----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlW  838 (897)
                      ++-..|.....+..+++.+.++|+|..||.|.+|. +.     ...+.+.=|...|.+++|+++  +|+|||..|..-+|
T Consensus       199 ~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W  278 (792)
T KOG1963|consen  199 DITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW  278 (792)
T ss_pred             hhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence            33444555578899999999999999999999996 33     233445558899999999997  99999999999999


Q ss_pred             eCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641          839 TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDS  886 (897)
Q Consensus       839 d~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~  886 (897)
                      ...++.   .+-+.--.+.|..+.||||++.......|.+|.+-...+
T Consensus       279 q~~T~~---kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d  323 (792)
T KOG1963|consen  279 QLETGK---KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD  323 (792)
T ss_pred             eecCCC---cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence            999984   233444567899999999999999999999999887644

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.67  E-value=0.00013  Score=89.34  Aligned_cols=87  Identities=25%  Similarity=0.339  Sum_probs=73.4

Q ss_pred             EeCC-cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCc-----ceeEEEeeccCCCeEEEEEccCCCEE
Q 002641          800 WNHR-ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI-----LHLIQQIREHTKAVTGLAILQSGEML  870 (897)
Q Consensus       800 Wd~~-~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~-----~~~i~~l~gH~~~V~slafspdg~~L  870 (897)
                      |+.+ ..+..+..|...|..++.+++   +|+|||.|||||+||.+.-.     .+...++..-++.|.++.+.+.|+.+
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence            7776 788888899999999998864   99999999999999998432     23445555567789999999999999


Q ss_pred             EEEeCCCcEEEEeCCC
Q 002641          871 YSGSLDKTARVRSNDS  886 (897)
Q Consensus       871 ~SgS~D~tIrlWdi~~  886 (897)
                      +.|+.||.|++.++.-
T Consensus      1114 Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred             EEEcCCCeEEEEEccc
Confidence            9999999999999876

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.67  E-value=8.1e-05  Score=82.98  Aligned_cols=106  Identities=17%  Similarity=0.195  Sum_probs=81.3

Q ss_pred             ccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeE
Q 002641          773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI  848 (897)
Q Consensus       773 ~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i  848 (897)
                      .+...+...+|....+-.|...|+|.+|...  +.+..+..|.++|.+|++.++  +.+|.|.|..++|||+++-.  .+
T Consensus       251 ~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~--ql  328 (545)
T KOG1272|consen  251 AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY--QL  328 (545)
T ss_pred             CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc--cc
Confidence            3445556666777788899999999999987  777788899999999999996  99999999999999999863  23


Q ss_pred             EEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 002641          849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRS  883 (897)
Q Consensus       849 ~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWd  883 (897)
                      .++.. .-....++||..|  ++..|....+.+|.
T Consensus       329 ~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  329 HTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             ceeec-CCCcccccccccc--ceeeecCCeeeeeh
Confidence            33332 2345678888555  44455556789994

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=97.63  E-value=0.00028  Score=74.90  Aligned_cols=75  Identities=23%  Similarity=0.208  Sum_probs=61.0

Q ss_pred             cccccccceeEeeecc-cccEEEEecCCCCeEEEeCC---cceee-ccCCCCcEEEEEEeCC---EEEEEecCCeEEEEe
Q 002641          768 IMKGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR---ELVHV-DSSENGKVLSIACFRD---KIFSGHSDGTIKVWT  839 (897)
Q Consensus       768 ~l~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~---~~l~~-l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd  839 (897)
                      ..+.|.-..+...++. +.+.+.+||.|+.+.-||++   +.+.. -+-|+..|.|+.-+|.   .++||+.|..|++||
T Consensus       160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D  239 (339)
T KOG0280|consen  160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD  239 (339)
T ss_pred             cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence            5666776666666654 56789999999999999988   33333 4568999999999874   999999999999999


Q ss_pred             CCC
Q 002641          840 GRG  842 (897)
Q Consensus       840 ~~~  842 (897)
                      .++
T Consensus       240 tRn  242 (339)
T KOG0280|consen  240 TRN  242 (339)
T ss_pred             hhc
Confidence            994

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.62  E-value=4.4e-05  Score=87.25  Aligned_cols=69  Identities=22%  Similarity=0.477  Sum_probs=56.3

Q ss_pred             CCCCcccccccccCCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHHH
Q 002641          159 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQ  228 (897)
Q Consensus       159 ~l~~el~CpIC~~l~~dPV~l-~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~~  228 (897)
                      .+.+++.||+|..++.||+.+ .|||.||+.|+..|... ...||.|+..+.....+.....+++.+.++.
T Consensus        17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~   86 (391)
T KOG0297|consen   17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLP   86 (391)
T ss_pred             CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcc
Confidence            577889999999999999995 99999999999999986 6789999988776665323455666666554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=97.60  E-value=0.00028  Score=80.54  Aligned_cols=113  Identities=16%  Similarity=0.186  Sum_probs=85.5

Q ss_pred             ccceeEeeecccccEEEEecCCCCeEEEeCC--cce------eeccCCCC-----cEEEEEEeCC--EEEEEecCCeEEE
Q 002641          773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELV------HVDSSENG-----KVLSIACFRD--KIFSGHSDGTIKV  837 (897)
Q Consensus       773 ~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l------~~l~gH~~-----~V~sV~fspd--~L~Sgs~DgtIrl  837 (897)
                      ...++++.+++.-.+|+.|+.||.|..||.+  ...      .....|.+     .|+++.|+.|  .++.|..+|.|.+
T Consensus       175 ~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~i  254 (703)
T KOG2321|consen  175 SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLI  254 (703)
T ss_pred             cccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEE
Confidence            3677888888888899999999999999986  211      22223433     4999999986  8999999999999


Q ss_pred             EeCCCCcceeEEEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCc
Q 002641          838 WTGRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       838 Wd~~~~~~~~i~~l~gH~~~V~slafspd--g~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ||+++.. ..+..-++..-+|..+.|.+.  ++.++|.. ...++|||-.+|
T Consensus       255 yDLRa~~-pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~G  304 (703)
T KOG2321|consen  255 YDLRASK-PLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTG  304 (703)
T ss_pred             EEcccCC-ceeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccC
Confidence            9999885 333333444557899999776  35555543 468999999888

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=3.5e-05  Score=81.74  Aligned_cols=51  Identities=20%  Similarity=0.168  Sum_probs=43.9

Q ss_pred             ccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCC
Q 002641          164 FVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP  214 (897)
Q Consensus       164 l~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~  214 (897)
                      -.|+||..-+.-||.++|+|-||.-||......+..+||+||.+++..-+.
T Consensus         8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~   58 (324)
T KOG0824|consen    8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDF   58 (324)
T ss_pred             CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhc
Confidence            359999999999999999999999999985544566899999999876653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.55  E-value=0.00081  Score=78.42  Aligned_cols=113  Identities=13%  Similarity=-0.025  Sum_probs=79.4

Q ss_pred             ccceeEeeecccccEEEEecCC---CCeEEEeCC-cceeeccCCCCcEEEEEEeCC---EEEEEecCC--eEEEEeCCCC
Q 002641          773 RELRKYSPLAFEMVKVLSNGHD---SSADFWNHR-ELVHVDSSENGKVLSIACFRD---KIFSGHSDG--TIKVWTGRGS  843 (897)
Q Consensus       773 ~~~~~~~~~s~d~~~LaSgs~D---gtIklWd~~-~~l~~l~gH~~~V~sV~fspd---~L~Sgs~Dg--tIrlWd~~~~  843 (897)
                      ...+....+++||++|+..+.+   ..|.+||+. .....+..+.+...++.|+||   ++++.+.+|  .|.+||+.++
T Consensus       203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g  282 (433)
T PRK04922        203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR  282 (433)
T ss_pred             CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC
Confidence            3445556778899999887754   368999986 333344455556668899997   445666665  5999999887


Q ss_pred             cceeEEEeeccCCCeEEEEEccCCCEEEEEeC-CCc--EEEEeCCCcc
Q 002641          844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DKT--ARVRSNDSFT  888 (897)
Q Consensus       844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~-D~t--IrlWdi~~~~  888 (897)
                      .   ...+..|.......+|+|||+.|+.++. ++.  |.++|+.++.
T Consensus       283 ~---~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~  327 (433)
T PRK04922        283 Q---LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS  327 (433)
T ss_pred             C---eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            4   4456666666678999999998887774 454  6666776663

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.55  E-value=0.00042  Score=76.08  Aligned_cols=109  Identities=12%  Similarity=0.167  Sum_probs=91.1

Q ss_pred             EeeecccccEEEEecCC--CCeEEEeCCcceeeccCCC-----------CcEEEEEEeCC----EEEEEecCCeEEEEeC
Q 002641          778 YSPLAFEMVKVLSNGHD--SSADFWNHRELVHVDSSEN-----------GKVLSIACFRD----KIFSGHSDGTIKVWTG  840 (897)
Q Consensus       778 ~~~~s~d~~~LaSgs~D--gtIklWd~~~~l~~l~gH~-----------~~V~sV~fspd----~L~Sgs~DgtIrlWd~  840 (897)
                      +-.+..+...+++||..  ..+++||+.+..+++.+.+           -+++++.|-++    .|++|..-+.+|+||.
T Consensus       154 ~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt  233 (412)
T KOG3881|consen  154 VRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDT  233 (412)
T ss_pred             eccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecC
Confidence            33344456678889999  8999999986667776632           24557777653    9999999999999999


Q ss_pred             CCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          841 RGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       841 ~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      +.+. +++..|.--..+++++...|+|+.+++|-.-+.+..+|++++
T Consensus       234 ~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~  279 (412)
T KOG3881|consen  234 RHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG  279 (412)
T ss_pred             cccC-cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc
Confidence            9876 788888888889999999999999999999999999999998

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.54  E-value=4e-05  Score=76.13  Aligned_cols=59  Identities=15%  Similarity=0.343  Sum_probs=45.2

Q ss_pred             cccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHH
Q 002641          163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLI  224 (897)
Q Consensus       163 el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li  224 (897)
                      .|.|-||..-++.||++.|||.||..|..+-... ...|-+|++......-  ....+..++
T Consensus       196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~G~f~--V~~d~~kmL  254 (259)
T COG5152         196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATYGRFW--VVSDLQKML  254 (259)
T ss_pred             ceeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhcccee--HHhhHHHHH
Confidence            4999999999999999999999999998875553 4589999987654432  333444443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.53  E-value=0.00036  Score=75.93  Aligned_cols=107  Identities=14%  Similarity=0.180  Sum_probs=77.8

Q ss_pred             cccEEEEecCCCCeEEEeCC-cceeeccCC-CCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCc--ce--------e-
Q 002641          784 EMVKVLSNGHDSSADFWNHR-ELVHVDSSE-NGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI--LH--------L-  847 (897)
Q Consensus       784 d~~~LaSgs~DgtIklWd~~-~~l~~l~gH-~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~--~~--------~-  847 (897)
                      ....++++..|-+|++||-. +....++.- ...|+|++|-|.   .|+.|.. +-|.+|......  .+        . 
T Consensus       109 H~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~  187 (445)
T KOG2139|consen  109 HIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHL  187 (445)
T ss_pred             hhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccch
Confidence            44567889999999999976 444455543 678999999995   5666555 457899876321  01        1 


Q ss_pred             -EEEeeccCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCccceee
Q 002641          848 -IQQIREHTKAVTGLAILQSGEMLYSGSL-DKTARVRSNDSFTYAIF  892 (897)
Q Consensus       848 -i~~l~gH~~~V~slafspdg~~L~SgS~-D~tIrlWdi~~~~l~~l  892 (897)
                       +....|| ..|++++|.+||..++++|. |..|+|||..+|....+
T Consensus       188 qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL  233 (445)
T KOG2139|consen  188 QVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL  233 (445)
T ss_pred             hheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc
Confidence             2223455 68999999999999999995 67999999999844443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.51  E-value=0.00012  Score=82.58  Aligned_cols=119  Identities=12%  Similarity=0.139  Sum_probs=84.7

Q ss_pred             ccccccceeEeeecccccEEEEecCCCCeEEEeCC---------cceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEe
Q 002641          769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---------ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWT  839 (897)
Q Consensus       769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---------~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd  839 (897)
                      ..||+..++...--.+.+-++|+|.|++|++|.++         -+..+++.|+.+|.++.|-.+.=...|.||.|.+||
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWD  810 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWD  810 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeec
Confidence            44555444444333456678999999999999975         267788899999999988877433445678888888


Q ss_pred             CCCCc---------------------------------------------ceeEEEe-----eccCCCeEEEEEccCCCE
Q 002641          840 GRGSI---------------------------------------------LHLIQQI-----REHTKAVTGLAILQSGEM  869 (897)
Q Consensus       840 ~~~~~---------------------------------------------~~~i~~l-----~gH~~~V~slafspdg~~  869 (897)
                      .--+.                                             ......+     .+.+..+.++++.+.|++
T Consensus       811 PFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~  890 (1034)
T KOG4190|consen  811 PFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNK  890 (1034)
T ss_pred             ccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcch
Confidence            54332                                             0111111     234456788999999999


Q ss_pred             EEEEeCCCcEEEEeCCCc
Q 002641          870 LYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       870 L~SgS~D~tIrlWdi~~~  887 (897)
                      ++.|-..|+|-+.|.++|
T Consensus       891 lAa~LSnGci~~LDaR~G  908 (1034)
T KOG4190|consen  891 LAAALSNGCIAILDARNG  908 (1034)
T ss_pred             hhHHhcCCcEEEEecCCC
Confidence            999999999999999998

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.48  E-value=0.0015  Score=76.24  Aligned_cols=114  Identities=13%  Similarity=-0.056  Sum_probs=75.6

Q ss_pred             ccceeEeeecccccEEEEecC---CCCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEE-EEecCC--eEEEEeCCCC
Q 002641          773 RELRKYSPLAFEMVKVLSNGH---DSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIF-SGHSDG--TIKVWTGRGS  843 (897)
Q Consensus       773 ~~~~~~~~~s~d~~~LaSgs~---DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~-Sgs~Dg--tIrlWd~~~~  843 (897)
                      ........++|||++|+..+.   +..+.+||+. .....+....+.+..+.|+||  .|+ +.+.+|  .|.+||+.++
T Consensus       198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg  277 (429)
T PRK03629        198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG  277 (429)
T ss_pred             CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            345667788899999886543   3568899986 222333333344557899998  444 445555  5889999887


Q ss_pred             cceeEEEeeccCCCeEEEEEccCCCEEEEEeCC-CcEEEE--eCCCccc
Q 002641          844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-KTARVR--SNDSFTY  889 (897)
Q Consensus       844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D-~tIrlW--di~~~~l  889 (897)
                      .   ...+..+...+....|+|||+.|+..+.+ +..++|  |+.++..
T Consensus       278 ~---~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~  323 (429)
T PRK03629        278 Q---IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP  323 (429)
T ss_pred             C---EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence            4   33444455567889999999988877754 455555  6666633

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.47  E-value=0.0011  Score=77.11  Aligned_cols=113  Identities=12%  Similarity=0.033  Sum_probs=76.4

Q ss_pred             eeEeeecccccEEE-EecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC--EEEEEe-cCCeEEEEeCC--CCcce
Q 002641          776 RKYSPLAFEMVKVL-SNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGH-SDGTIKVWTGR--GSILH  846 (897)
Q Consensus       776 ~~~~~~s~d~~~La-Sgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd--~L~Sgs-~DgtIrlWd~~--~~~~~  846 (897)
                      .....+++||+.|+ +.+.|+...||.++   .....+..|.+.+.+..|+||  .++..+ .+|...+|.+.  ++.  
T Consensus       242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~--  319 (427)
T PRK02889        242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA--  319 (427)
T ss_pred             ccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc--
Confidence            34566788998876 57788888888654   445666667666778899997  555444 45777777654  442  


Q ss_pred             eEEEeeccCCCeEEEEEccCCCEEEEEeCCC---cEEEEeCCCcccee
Q 002641          847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDK---TARVRSNDSFTYAI  891 (897)
Q Consensus       847 ~i~~l~gH~~~V~slafspdg~~L~SgS~D~---tIrlWdi~~~~l~~  891 (897)
                       ...+..+.......+|+|||++|+..+.++   .|.+||+.++....
T Consensus       320 -~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~  366 (427)
T PRK02889        320 -AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA  366 (427)
T ss_pred             -eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE
Confidence             222222233445688999999998777554   69999998874333

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.44  E-value=0.0011  Score=73.99  Aligned_cols=109  Identities=8%  Similarity=0.022  Sum_probs=75.7

Q ss_pred             eeEeeecccccEEEEecC-CCCeEEEeCC--c----ceeeccCCCCcEEEEEEeCC--EE-EEEecCCeEEEEeCCCCcc
Q 002641          776 RKYSPLAFEMVKVLSNGH-DSSADFWNHR--E----LVHVDSSENGKVLSIACFRD--KI-FSGHSDGTIKVWTGRGSIL  845 (897)
Q Consensus       776 ~~~~~~s~d~~~LaSgs~-DgtIklWd~~--~----~l~~l~gH~~~V~sV~fspd--~L-~Sgs~DgtIrlWd~~~~~~  845 (897)
                      ...+.++++++++++++. ++.|.+|++.  .    .+..+. +.....+++|+|+  ++ ++...+++|.+||+.+.. 
T Consensus        82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g-  159 (330)
T PRK11028         82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG-  159 (330)
T ss_pred             ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC-
Confidence            356677889998887765 7899999985  1    222222 3345678899997  44 566677999999997631 


Q ss_pred             eeE----EEee-ccCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCC
Q 002641          846 HLI----QQIR-EHTKAVTGLAILQSGEMLYSGSL-DKTARVRSNDS  886 (897)
Q Consensus       846 ~~i----~~l~-gH~~~V~slafspdg~~L~SgS~-D~tIrlWdi~~  886 (897)
                      .+.    .... ........++|+|+|++++++.. +++|.+||+..
T Consensus       160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~  206 (330)
T PRK11028        160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD  206 (330)
T ss_pred             cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence            111    0111 11234678999999999988875 89999999973

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=6.9e-05  Score=79.41  Aligned_cols=48  Identities=19%  Similarity=0.351  Sum_probs=41.2

Q ss_pred             cccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCC
Q 002641          163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSST  211 (897)
Q Consensus       163 el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~  211 (897)
                      -|.|-||...|.+||++.|||+||..|-...+.. ...|++|.+.....
T Consensus       241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~g~  288 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTHGS  288 (313)
T ss_pred             CccccccccccccchhhcCCceeehhhhcccccc-CCcceecccccccc
Confidence            3789999999999999999999999998877664 35899999886543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.42  E-value=0.0018  Score=75.55  Aligned_cols=112  Identities=8%  Similarity=-0.007  Sum_probs=75.1

Q ss_pred             EeeecccccEEE-EecCCC--CeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEe-cCCe--EEEEeCCCCcceeE
Q 002641          778 YSPLAFEMVKVL-SNGHDS--SADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGH-SDGT--IKVWTGRGSILHLI  848 (897)
Q Consensus       778 ~~~~s~d~~~La-Sgs~Dg--tIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs-~Dgt--IrlWd~~~~~~~~i  848 (897)
                      ...+++||++++ +.+.++  .|.+||+. .....+..|.+....++|+||  .++.++ .+|.  |.++|+.++.   .
T Consensus       252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~---~  328 (433)
T PRK04922        252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS---A  328 (433)
T ss_pred             CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---e
Confidence            456788998775 455555  58888987 445566677666778999997  565555 4555  5566666663   2


Q ss_pred             EEeeccCCCeEEEEEccCCCEEEEEeCCC---cEEEEeCCCccceee
Q 002641          849 QQIREHTKAVTGLAILQSGEMLYSGSLDK---TARVRSNDSFTYAIF  892 (897)
Q Consensus       849 ~~l~gH~~~V~slafspdg~~L~SgS~D~---tIrlWdi~~~~l~~l  892 (897)
                      ..+..+.......+|+|||++|+..+.++   .|.+||+.++....+
T Consensus       329 ~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L  375 (433)
T PRK04922        329 ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTL  375 (433)
T ss_pred             EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEEC
Confidence            22222334455789999999988765433   699999988744443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.41  E-value=0.0018  Score=72.48  Aligned_cols=110  Identities=10%  Similarity=0.151  Sum_probs=74.1

Q ss_pred             eEeeecccccEEE-EecCCCCeEEEeCCc--cee-----eccC-CCCcEEEEEEeCC--EEEEEec-CCeEEEEeCCC--
Q 002641          777 KYSPLAFEMVKVL-SNGHDSSADFWNHRE--LVH-----VDSS-ENGKVLSIACFRD--KIFSGHS-DGTIKVWTGRG--  842 (897)
Q Consensus       777 ~~~~~s~d~~~La-Sgs~DgtIklWd~~~--~l~-----~l~g-H~~~V~sV~fspd--~L~Sgs~-DgtIrlWd~~~--  842 (897)
                      ....+++++++++ +...+++|.+||+..  .+.     .... .......+.|+||  +++++.. +++|.+||+..  
T Consensus       129 ~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~  208 (330)
T PRK11028        129 HSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPH  208 (330)
T ss_pred             cEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence            3445678888774 555679999999862  111     1111 1234578999998  6666655 89999999973  


Q ss_pred             CcceeEEEeecc------CCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCC
Q 002641          843 SILHLIQQIREH------TKAVTGLAILQSGEMLYSGS-LDKTARVRSNDS  886 (897)
Q Consensus       843 ~~~~~i~~l~gH------~~~V~slafspdg~~L~SgS-~D~tIrlWdi~~  886 (897)
                      +....++.+..+      ......+.|+|+|++++++. .+++|.+|++..
T Consensus       209 ~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        209 GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence            333444444322      12344688999999999885 478999999864

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.38  E-value=0.002  Score=74.38  Aligned_cols=113  Identities=14%  Similarity=-0.050  Sum_probs=78.6

Q ss_pred             cceeEeeecccccEEEEecCC---CCeEEEeCC-cceeeccCCCCcEEEEEEeCC---EEEEEecCC--eEEEEeCCCCc
Q 002641          774 ELRKYSPLAFEMVKVLSNGHD---SSADFWNHR-ELVHVDSSENGKVLSIACFRD---KIFSGHSDG--TIKVWTGRGSI  844 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~D---gtIklWd~~-~~l~~l~gH~~~V~sV~fspd---~L~Sgs~Dg--tIrlWd~~~~~  844 (897)
                      ..+....++++|++++.++.+   ..|.+||+. .....+..+.+.+.++.|+||   ++++.+.++  .|.+||+.++.
T Consensus       190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~  269 (417)
T TIGR02800       190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ  269 (417)
T ss_pred             CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence            344555688999998877654   479999987 334445556677788999997   445555554  58889988763


Q ss_pred             ceeEEEeeccCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCccc
Q 002641          845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DK--TARVRSNDSFTY  889 (897)
Q Consensus       845 ~~~i~~l~gH~~~V~slafspdg~~L~SgS~-D~--tIrlWdi~~~~l  889 (897)
                         ...+..|...+....|+|||+.|+..+. ++  .|.+||+.++..
T Consensus       270 ---~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~  314 (417)
T TIGR02800       270 ---LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV  314 (417)
T ss_pred             ---EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence               3445555555667899999998877664 33  577788877643

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.35  E-value=0.0029  Score=73.74  Aligned_cols=112  Identities=9%  Similarity=0.045  Sum_probs=75.9

Q ss_pred             EeeecccccEEEEe-cCCC--CeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEec-CCeEEEE--eCCCCcceeE
Q 002641          778 YSPLAFEMVKVLSN-GHDS--SADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHS-DGTIKVW--TGRGSILHLI  848 (897)
Q Consensus       778 ~~~~s~d~~~LaSg-s~Dg--tIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~-DgtIrlW--d~~~~~~~~i  848 (897)
                      ...++|||++|+.. +.++  .|.+||+. .....+..+...+....|+||  .|+..+. +|..++|  |+.++.   .
T Consensus       247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~---~  323 (429)
T PRK03629        247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA---P  323 (429)
T ss_pred             CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC---e
Confidence            45678899988754 4455  48888987 444555556667889999997  5655554 4555666  555553   3


Q ss_pred             EEeeccCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCccceee
Q 002641          849 QQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVRSNDSFTYAIF  892 (897)
Q Consensus       849 ~~l~gH~~~V~slafspdg~~L~SgS~D---~tIrlWdi~~~~l~~l  892 (897)
                      ..+..+...+.+..|+|||++|+..+.+   ..|.+||+.++....+
T Consensus       324 ~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~L  370 (429)
T PRK03629        324 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL  370 (429)
T ss_pred             EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEe
Confidence            3444445556788999999998876643   3588899988854444

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.34  E-value=0.00049  Score=74.52  Aligned_cols=110  Identities=17%  Similarity=0.121  Sum_probs=82.3

Q ss_pred             cccccEEEEecCCCCeEEEeCC-c------ceeeccCCCCcEEEEEE---eCCEEEEEecCCeEEEEeCCCCc-ceeEEE
Q 002641          782 AFEMVKVLSNGHDSSADFWNHR-E------LVHVDSSENGKVLSIAC---FRDKIFSGHSDGTIKVWTGRGSI-LHLIQQ  850 (897)
Q Consensus       782 s~d~~~LaSgs~DgtIklWd~~-~------~l~~l~gH~~~V~sV~f---spd~L~Sgs~DgtIrlWd~~~~~-~~~i~~  850 (897)
                      ...+..+..|...|.|-..|++ +      ..+. --|.+.|+|+..   +...|.+.+.+|+|++||.+.-+ ..-+.+
T Consensus       261 ~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~q  339 (425)
T KOG2695|consen  261 AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQ  339 (425)
T ss_pred             cccCCeeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceee
Confidence            3357789999999999999987 2      1111 247888888864   33488889999999999999642 123899


Q ss_pred             eeccCCCeEEEEE--ccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641          851 IREHTKAVTGLAI--LQSGEMLYSGSLDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       851 l~gH~~~V~slaf--spdg~~L~SgS~D~tIrlWdi~~~-~l~~l  892 (897)
                      +.||.+.-..+-+  .+....+++++.|.-.|||.++.| .+.++
T Consensus       340 YeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  340 YEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             eecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence            9999775544443  345578899999999999999998 55443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.34  E-value=0.0021  Score=75.00  Aligned_cols=95  Identities=9%  Similarity=-0.073  Sum_probs=70.8

Q ss_pred             CCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEec---CCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCC
Q 002641          795 SSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHS---DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE  868 (897)
Q Consensus       795 gtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~---DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~  868 (897)
                      ..|.+||.+ ...+.+..|...+.+..|+||  .|+..+.   +..|.+||+.++.   ...+..+.+.+.+.+|+|||+
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~---~~~l~~~~g~~~~~~~SPDG~  258 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ---RELVGNFPGMTFAPRFSPDGR  258 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc---EEEeecCCCcccCcEECCCCC
Confidence            467788877 555677788899999999998  6666553   4789999999874   344555666778899999998


Q ss_pred             EEE-EEeCCCc--EEEEeCCCccceee
Q 002641          869 MLY-SGSLDKT--ARVRSNDSFTYAIF  892 (897)
Q Consensus       869 ~L~-SgS~D~t--IrlWdi~~~~l~~l  892 (897)
                      .|+ +.+.|+.  |.+||+.++....+
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~~L  285 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTTRL  285 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceEEc
Confidence            765 6666665  66778888744444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.34  E-value=0.0018  Score=75.43  Aligned_cols=110  Identities=14%  Similarity=0.069  Sum_probs=76.3

Q ss_pred             ccceeEeeecccccEEEEecCC---CCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EE-EEEecCCeEEEEeCC--CC
Q 002641          773 RELRKYSPLAFEMVKVLSNGHD---SSADFWNHR-ELVHVDSSENGKVLSIACFRD--KI-FSGHSDGTIKVWTGR--GS  843 (897)
Q Consensus       773 ~~~~~~~~~s~d~~~LaSgs~D---gtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L-~Sgs~DgtIrlWd~~--~~  843 (897)
                      ...+....++|||++|+..+.+   ..|.+||+. .....+....+.+.+..|+||  .| ++.+.||..++|.+.  ++
T Consensus       195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~  274 (427)
T PRK02889        195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS  274 (427)
T ss_pred             CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence            3445566788999998877654   358999987 333344444566678999997  44 567888887777654  43


Q ss_pred             cceeEEEeeccCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCC
Q 002641          844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DKTARVRSND  885 (897)
Q Consensus       844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~-D~tIrlWdi~  885 (897)
                         ....+..|...+....|+|||+.|+..+. ++...+|.+.
T Consensus       275 ---~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~  314 (427)
T PRK02889        275 ---GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP  314 (427)
T ss_pred             ---CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence               24556666666778899999998887664 5677777653

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.32  E-value=0.00019  Score=75.09  Aligned_cols=73  Identities=15%  Similarity=0.276  Sum_probs=64.2

Q ss_pred             CcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCc
Q 002641          814 GKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       814 ~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspd-g~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ..|.+++-+|.   +++.|+.||.+-+||.+... .+...++.|++.++-+.|+|. +..|+++|.||.+..||..+.
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~  256 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT  256 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence            34999999984   88899999999999999873 566778999999999999995 799999999999999998754

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.25  E-value=0.00098  Score=77.18  Aligned_cols=73  Identities=16%  Similarity=0.148  Sum_probs=62.8

Q ss_pred             CCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          811 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       811 gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ...+.|.|.+++|+  .++.|..||+|.+||...+    +..+..+.-.++.++|+|+|..++.|+.-|.+.+||+.-.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~----~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG----VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCC----eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            46789999999996  9999999999999999887    3334444556789999999999999999999999999765

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=97.22  E-value=0.0021  Score=70.35  Aligned_cols=116  Identities=9%  Similarity=-0.042  Sum_probs=90.9

Q ss_pred             cccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCC--CCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc-
Q 002641          772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSE--NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-  844 (897)
Q Consensus       772 ~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH--~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~-  844 (897)
                      |+..+.+..|.....++.||+.+++|.+.|+.  +.+.++...  .+.|+.+..+|.  .|++.+.||.|.+||.+... 
T Consensus       104 H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~  183 (609)
T KOG4227|consen  104 HRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN  183 (609)
T ss_pred             cccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence            44566677788888999999999999999987  556555432  468999999993  99999999999999999653 


Q ss_pred             ceeEEEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCc
Q 002641          845 LHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       845 ~~~i~~l~gH~~~V~slafspd-g~~L~SgS~D~tIrlWdi~~~  887 (897)
                      .-....+....+..+++.|+|- ..+|++.+..+-+.+||++..
T Consensus       184 ~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  184 PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             CCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence            1112223345567889999996 478889998899999999865

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.0003  Score=73.88  Aligned_cols=50  Identities=18%  Similarity=0.312  Sum_probs=41.4

Q ss_pred             CCCcccccccccCCCCceec-CCCcccchHHHHHHHhc-CCCCCCCCCcccC
Q 002641          160 PPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIER-GNSSCPITRQKLS  209 (897)
Q Consensus       160 l~~el~CpIC~~l~~dPV~l-~CGHtFCr~CI~~~~~~-~~~~CP~Cr~~~~  209 (897)
                      -..+..||+|++.-.-|.++ +|||.||..||..-... ..++||.|+....
T Consensus       236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            44577899999999999988 69999999999885542 3578999998754

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=97.20  E-value=0.00024  Score=89.87  Aligned_cols=87  Identities=18%  Similarity=0.345  Sum_probs=70.8

Q ss_pred             CCCCeEEEeCC-----cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEcc
Q 002641          793 HDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ  865 (897)
Q Consensus       793 ~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafsp  865 (897)
                      .++.+.+||.-     -+++  +.|.+.+++++|-|.  .|+|||.+|.|++||++..  +.++.++.         +. 
T Consensus      2313 d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr--ql~h~~~~---------~~- 2378 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR--QLRHTFQA---------LD- 2378 (2439)
T ss_pred             CCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH--HHHHHhhh---------hh-
Confidence            56899999964     3444  789999999999997  9999999999999999987  34444443         44 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641          866 SGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       866 dg~~L~SgS~D~tIrlWdi~~~-~l~~l~  893 (897)
                      .-.+|++|+..|.|+||++..- .+.+|+
T Consensus      2379 ~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2379 TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             hhheeeccCcccceEEEEccccchhhcCc
Confidence            5678999999999999999875 655554

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.19  E-value=0.00075  Score=70.68  Aligned_cols=107  Identities=12%  Similarity=0.291  Sum_probs=75.8

Q ss_pred             ceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCccee-
Q 002641          775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHL-  847 (897)
Q Consensus       775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~-  847 (897)
                      ......|+...+.++.|+.||.+-+||.+   -....+..|+.+++-|-|+|.   .|++++.||.+--||..+.-+.+ 
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~  261 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSIS  261 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEec
Confidence            33444555567789999999999999998   566778899999999999973   99999999999999988431000 


Q ss_pred             --------------E-------EEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 002641          848 --------------I-------QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRS  883 (897)
Q Consensus       848 --------------i-------~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWd  883 (897)
                                    +       ..+..-...|+++.+  -|..|++|+.-+-|.+.+
T Consensus       262 ~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  262 NQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             CccccccccccCCcccceEeeeccccccceeeeeeec--cCceEEeccccceEEEec
Confidence                          0       001111223444333  377888888777777664

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.18  E-value=0.0046  Score=70.60  Aligned_cols=102  Identities=14%  Similarity=0.198  Sum_probs=75.4

Q ss_pred             EEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEE
Q 002641          788 VLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI  863 (897)
Q Consensus       788 LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slaf  863 (897)
                      +++-..+++|.+.|..  +.+..+......-..+.|+||  +++..+.||.|.+||+.+.  +.+.+++.-. ...++++
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--~~v~~i~~G~-~~~~i~~   85 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG--KVVATIKVGG-NPRGIAV   85 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS--SEEEEEE-SS-EEEEEEE
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc--cEEEEEecCC-CcceEEE
Confidence            4567778999999986  677777765444455788996  7888899999999999998  4677776543 4678999


Q ss_pred             ccCCCEEEEEe-CCCcEEEEeCCCc-cceee
Q 002641          864 LQSGEMLYSGS-LDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       864 spdg~~L~SgS-~D~tIrlWdi~~~-~l~~l  892 (897)
                      ++||++++.+. .++++.++|.++. .++++
T Consensus        86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I  116 (369)
T PF02239_consen   86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTI  116 (369)
T ss_dssp             --TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred             cCCCCEEEEEecCCCceeEeccccccceeec
Confidence            99999999886 6899999999887 44443

...

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=97.17  E-value=0.0012  Score=71.20  Aligned_cols=107  Identities=14%  Similarity=0.130  Sum_probs=82.3

Q ss_pred             eEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcceeEEEe
Q 002641          777 KYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQI  851 (897)
Q Consensus       777 ~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~i~~l  851 (897)
                      .+..++++|+++||.+.- .+-|-|..  +..+.+. .-..|..+.|..|   +|...+.|+.|.+|++...  .-...+
T Consensus        12 ~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp--ew~ckI   87 (447)
T KOG4497|consen   12 PFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP--EWYCKI   87 (447)
T ss_pred             CceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecc--eeEEEe
Confidence            377899999999999866 55567765  3333322 2356777888887   6666788999999999887  356677


Q ss_pred             eccCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCc
Q 002641          852 REHTKAVTGLAILQSGE-MLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       852 ~gH~~~V~slafspdg~-~L~SgS~D~tIrlWdi~~~  887 (897)
                      ..-...+.++.|||||+ .|.+...|-.|.+|.+.+.
T Consensus        88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~  124 (447)
T KOG4497|consen   88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ  124 (447)
T ss_pred             ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc
Confidence            77788899999999995 5556668999999999875

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.17  E-value=0.0056  Score=64.58  Aligned_cols=112  Identities=10%  Similarity=0.065  Sum_probs=83.8

Q ss_pred             eeEeeecccccEEEEecCCCCeEEEeCC----cceee-ccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcc---
Q 002641          776 RKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHV-DSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL---  845 (897)
Q Consensus       776 ~~~~~~s~d~~~LaSgs~DgtIklWd~~----~~l~~-l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~---  845 (897)
                      .+...+++|+++.++.+....|-.|.++    ..+.+ ...-...=++..|+.+  .+|+++.||++.|||++....   
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~  240 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA  240 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence            5667788999999999999999999886    23332 2233455678899874  999999999999999996420   


Q ss_pred             eeEEEeeccCCCeEEEEEccCC--CEEEEEeCCCcEEEEeCCCc
Q 002641          846 HLIQQIREHTKAVTGLAILQSG--EMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       846 ~~i~~l~gH~~~V~slafspdg--~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ....+-..|+++|..+.|+|-|  ..|+-.-.=+.+.+.|++++
T Consensus       241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~  284 (344)
T KOG4532|consen  241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY  284 (344)
T ss_pred             hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence            1112223489999999999876  45555555678999999998

>smart00320 WD40 WD40 repeats

Probab=97.17  E-value=0.001  Score=46.92  Aligned_cols=38  Identities=32%  Similarity=0.438  Sum_probs=34.7

Q ss_pred             eeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 002641          846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRS  883 (897)
Q Consensus       846 ~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWd  883 (897)
                      .++..+.+|...|+++.|+++++.+++|+.|+++++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45677888999999999999999999999999999997

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.16  E-value=0.0058  Score=70.47  Aligned_cols=111  Identities=11%  Similarity=0.006  Sum_probs=77.5

Q ss_pred             eEeeecccccEEE-EecCCC--CeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEec-CC--eEEEEeCCCCccee
Q 002641          777 KYSPLAFEMVKVL-SNGHDS--SADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHS-DG--TIKVWTGRGSILHL  847 (897)
Q Consensus       777 ~~~~~s~d~~~La-Sgs~Dg--tIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~-Dg--tIrlWd~~~~~~~~  847 (897)
                      ....++++|+.|+ +.+.++  .|.+||+. .....+..|.+......|+||  .|+.++. ++  .|.+||+.++.   
T Consensus       237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---  313 (417)
T TIGR02800       237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---  313 (417)
T ss_pred             cceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---
Confidence            3456788888765 455554  57888886 445556666666667889997  5555443 34  57777887763   


Q ss_pred             EEEeeccCCCeEEEEEccCCCEEEEEeCCC---cEEEEeCCCccce
Q 002641          848 IQQIREHTKAVTGLAILQSGEMLYSGSLDK---TARVRSNDSFTYA  890 (897)
Q Consensus       848 i~~l~gH~~~V~slafspdg~~L~SgS~D~---tIrlWdi~~~~l~  890 (897)
                      ...+..+...+....|+|+|++++.++.++   .|.+||+.++..+
T Consensus       314 ~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~  359 (417)
T TIGR02800       314 VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER  359 (417)
T ss_pred             EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE
Confidence            344555666778899999999999988776   7889999887433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.14  E-value=0.00039  Score=61.13  Aligned_cols=35  Identities=20%  Similarity=0.590  Sum_probs=29.2

Q ss_pred             ceec-CCCcccchHHHHHHHhcC--CCCCCCCCcccCC
Q 002641          176 PVTL-ETGQTYERRAIQEWIERG--NSSCPITRQKLSS  210 (897)
Q Consensus       176 PV~l-~CGHtFCr~CI~~~~~~~--~~~CP~Cr~~~~~  210 (897)
                      |++. .|||.|-..||.+|++..  +..||.||++...
T Consensus        46 plv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   46 PLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF   83 (85)
T ss_pred             ceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence            6555 899999999999999953  5689999998653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.13  E-value=0.0061  Score=70.91  Aligned_cols=113  Identities=16%  Similarity=0.001  Sum_probs=76.3

Q ss_pred             ccceeEeeecccccEEEEecCC---CCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EE-EEEecCC--eEEEEeCCCC
Q 002641          773 RELRKYSPLAFEMVKVLSNGHD---SSADFWNHR-ELVHVDSSENGKVLSIACFRD--KI-FSGHSDG--TIKVWTGRGS  843 (897)
Q Consensus       773 ~~~~~~~~~s~d~~~LaSgs~D---gtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L-~Sgs~Dg--tIrlWd~~~~  843 (897)
                      ........+++||++|+..+.+   ..|.+||+. .....+....+.+....|+||  .| ++.+.+|  .|.+||+.++
T Consensus       198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~  277 (430)
T PRK00178        198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR  277 (430)
T ss_pred             CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence            3444556788999998776644   357888886 333334444455667899997  44 4555555  5888899887


Q ss_pred             cceeEEEeeccCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCcc
Q 002641          844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DK--TARVRSNDSFT  888 (897)
Q Consensus       844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~-D~--tIrlWdi~~~~  888 (897)
                      .   ...+..+...+....|+|||+.|+..+. ++  .|.+||+.++.
T Consensus       278 ~---~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~  322 (430)
T PRK00178        278 Q---LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR  322 (430)
T ss_pred             C---eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            4   3445556666778899999988776653 33  57777887774

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.13  E-value=0.00019  Score=85.86  Aligned_cols=48  Identities=27%  Similarity=0.605  Sum_probs=42.1

Q ss_pred             CCcccccccccCCCC-----ceecCCCcccchHHHHHHHhcCCCCCCCCCcccC
Q 002641          161 PKDFVCPITTHIFDD-----PVTLETGQTYERRAIQEWIERGNSSCPITRQKLS  209 (897)
Q Consensus       161 ~~el~CpIC~~l~~d-----PV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~  209 (897)
                      ..+-.|+||.+.|..     |-.++|||.|+..|+..|++. ..+||.||..+.
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~  341 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY  341 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence            347789999999999     788999999999999999997 558999999543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=97.12  E-value=0.00076  Score=85.55  Aligned_cols=117  Identities=13%  Similarity=0.093  Sum_probs=93.7

Q ss_pred             cceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEeCCEEEEEe---cCCeEEEEeCCCC-cceeE
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRDKIFSGH---SDGTIKVWTGRGS-ILHLI  848 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd~L~Sgs---~DgtIrlWd~~~~-~~~~i  848 (897)
                      ..+.-..++..|+.+..+..||.+.+|... +.....+.|+.....+.|-...+++.+   .++.+.+||.... ...++
T Consensus      2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v 2331 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLV 2331 (2439)
T ss_pred             chhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCccccee
Confidence            334445566688899999999999999998 777778889988888888777666654   4688999998743 22344


Q ss_pred             EEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641          849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       849 ~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l  892 (897)
                      .  +.|-+.++++++.|....|+|||.+|.|++||++.. .+.+|
T Consensus      2332 ~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2332 H--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred             e--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence            4  889999999999999999999999999999999987 44443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=97.12  E-value=0.0017  Score=71.74  Aligned_cols=76  Identities=12%  Similarity=0.138  Sum_probs=64.6

Q ss_pred             ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeecc-CCCCcEEEEEEeCC-EEEEEecCCeEEEEeCCCCc
Q 002641          769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDS-SENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSI  844 (897)
Q Consensus       769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~-gH~~~V~sV~fspd-~L~Sgs~DgtIrlWd~~~~~  844 (897)
                      .-||-....-+.+++|+.+|+++..|..||+-.+.  -.+..|. ||+..|..++.-++ .|+|||.|+++++||+.+++
T Consensus       147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCC
Confidence            34666777778889999999999999999987766  4444444 79999999999998 78999999999999999985

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=97.01  E-value=0.0029  Score=72.57  Aligned_cols=99  Identities=16%  Similarity=0.253  Sum_probs=75.3

Q ss_pred             EEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc----ceeEEEeeccCC----
Q 002641          789 LSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI----LHLIQQIREHTK----  856 (897)
Q Consensus       789 aSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~----~~~i~~l~gH~~----  856 (897)
                      ..++....|.=.++.  ..+..|....+.+++|..++-  +|+.|+.||+|-.||.++..    +........|.+    
T Consensus       149 y~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~  228 (703)
T KOG2321|consen  149 YLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAA  228 (703)
T ss_pred             EEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcccccc
Confidence            333334445555665  788888888899999999984  88888889999999999753    111112222333    


Q ss_pred             -CeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          857 -AVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       857 -~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                       .|++++|+-+|-.++.|+.+|.+.|||+++.
T Consensus       229 ~svTal~F~d~gL~~aVGts~G~v~iyDLRa~  260 (703)
T KOG2321|consen  229 PSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS  260 (703)
T ss_pred             CcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence             4999999988999999999999999999986

>PRK04792 tolB translocation protein TolB; Provisional

Probab=96.99  E-value=0.008  Score=70.50  Aligned_cols=112  Identities=13%  Similarity=-0.083  Sum_probs=72.8

Q ss_pred             ceeEeeecccccEEEEecCC-C--CeEEEeCC-cceeeccCCCCcEEEEEEeCC---EEEEEecCCe--EEEEeCCCCcc
Q 002641          775 LRKYSPLAFEMVKVLSNGHD-S--SADFWNHR-ELVHVDSSENGKVLSIACFRD---KIFSGHSDGT--IKVWTGRGSIL  845 (897)
Q Consensus       775 ~~~~~~~s~d~~~LaSgs~D-g--tIklWd~~-~~l~~l~gH~~~V~sV~fspd---~L~Sgs~Dgt--IrlWd~~~~~~  845 (897)
                      ......++|||++|+..+.+ +  .|.+||+. .....+....+......|+||   ++++.+.+|.  |.+||+.++. 
T Consensus       219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~-  297 (448)
T PRK04792        219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA-  297 (448)
T ss_pred             cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC-
Confidence            44456778999988876543 3  47777875 222223322334457899997   4455666775  7777887764 


Q ss_pred             eeEEEeeccCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCccc
Q 002641          846 HLIQQIREHTKAVTGLAILQSGEMLYSGSL-DK--TARVRSNDSFTY  889 (897)
Q Consensus       846 ~~i~~l~gH~~~V~slafspdg~~L~SgS~-D~--tIrlWdi~~~~l  889 (897)
                        ...+..|...+...+|+|||+.|+..+. ++  .|.++|+.++..
T Consensus       298 --~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~  342 (448)
T PRK04792        298 --LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV  342 (448)
T ss_pred             --eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence              4455556666778999999988776653 44  466667777743

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.00042  Score=76.53  Aligned_cols=47  Identities=15%  Similarity=0.527  Sum_probs=40.3

Q ss_pred             ccccccccCCCCc--e-ecCCCcccchHHHHHHHhcCCCCCCCCCcccCC
Q 002641          164 FVCPITTHIFDDP--V-TLETGQTYERRAIQEWIERGNSSCPITRQKLSS  210 (897)
Q Consensus       164 l~CpIC~~l~~dP--V-~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~  210 (897)
                      ..|.||++-|.+-  + ++||+|.|-..||..|+.+....||+|++.+..
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            6999999999853  3 469999999999999999876779999987643

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=96.93  E-value=0.043  Score=67.03  Aligned_cols=268  Identities=18%  Similarity=0.234  Sum_probs=162.6

Q ss_pred             ChHHHHHHHHHHHHhhhccHHHHHHhhhccchHHHHHHHHhcCchH----HHHHHHHhCCChhhHH---HHhhHHHHHHH
Q 002641          327 DPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLE----AVVLIDLLRPSTRTLI---EMDMMESLMTV  399 (897)
Q Consensus       327 ~~~vlk~a~~~l~el~s~~e~~~~~i~~~~~~~~~i~~llk~~~~e----a~~LL~~L~~~~~~i~---~~~~~~~Ll~~  399 (897)
                      ..|+++.+..+|..+ +.+..+...+.+ .+-+.-++.+|+++..+    +..+|..|+-...|..   +.+.+|.|+..
T Consensus       262 QeqLlrv~~~lLlNL-Aed~~ve~kM~~-~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kL  339 (708)
T PF05804_consen  262 QEQLLRVAFYLLLNL-AEDPRVELKMVN-KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKL  339 (708)
T ss_pred             HHHHHHHHHHHHHHH-hcChHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHH
Confidence            345688888888777 444455555554 45566788888887333    3448889997766654   55678889999


Q ss_pred             HHhhcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchHHHHHHHHHHHhhhccccCcc
Q 002641          400 IKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKC  479 (897)
Q Consensus       400 l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c~~~~~~c  479 (897)
                      +.++.+++..       .|+-+|.-+  +|    +..++.+||+.|.+|.|+..++.++..+-  +. =+|-.+..|..|
T Consensus       340 l~s~~~~l~~-------~aLrlL~NL--Sf----d~~~R~~mV~~GlIPkLv~LL~d~~~~~v--al-~iLy~LS~dd~~  403 (708)
T PF05804_consen  340 LPSENEDLVN-------VALRLLFNL--SF----DPELRSQMVSLGLIPKLVELLKDPNFREV--AL-KILYNLSMDDEA  403 (708)
T ss_pred             hcCCCHHHHH-------HHHHHHHHh--Cc----CHHHHHHHHHCCCcHHHHHHhCCCchHHH--HH-HHHHHhccCHhh
Confidence            9887665322       223333222  33    34589999999999999999997765432  32 346667778899


Q ss_pred             hhhHhhhcchhhHHHHHhhc-CcchhHHHHHHHHHHHhhchhhhhHHHHHHhhccCccchhhHHHHHHHhcCcCCcchHH
Q 002641          480 RNSIADKAELAPVMESFMAA-SDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVA  558 (897)
Q Consensus       480 r~~~~~~~~~~~~~~ll~~~-~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~g~~~~m~~l~~~l~~~~~~~~~~~a  558 (897)
                      |+.++....+..++++|-.+ +.....+.++++.-|..-.|-+      +.+-++|++   +.|+....+..   -|+..
T Consensus       404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rna------qlm~~g~gL---~~L~~ra~~~~---D~lLl  471 (708)
T PF05804_consen  404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNA------QLMCEGNGL---QSLMKRALKTR---DPLLL  471 (708)
T ss_pred             HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHH------HHHHhcCcH---HHHHHHHHhcc---cHHHH
Confidence            99999999999999976664 4444566677777777766643      334444443   23333332211   22222


Q ss_pred             HHHHhhhhhcCcccccccHHHHHHHHHHHhhcCCchHHHHHHHHHHHhcccccccCCchhhHHHhHhhcCCCcc
Q 002641          559 GLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKS  632 (897)
Q Consensus       559 ~lllqld~l~~~~~~s~~reea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~~s~sg~~~~~~~llk~ag~~~~  632 (897)
                      .++==+-.=..|.|.  --.+.|.-|+..+.+.+.......+--+|.||.-    ++  +.-+-+++..+|-+-
T Consensus       472 KlIRNiS~h~~~~k~--~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~----~~--ld~~~ll~~~~llp~  537 (708)
T PF05804_consen  472 KLIRNISQHDGPLKE--LFVDFIGDLAKIVSSGDSEEFVVECLGILANLTI----PD--LDWAQLLQEYNLLPW  537 (708)
T ss_pred             HHHHHHHhcCchHHH--HHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc----CC--cCHHHHHHhCCHHHH
Confidence            211111000112221  2356788888888877766666666666666542    22  233445666565554

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.00062  Score=73.92  Aligned_cols=47  Identities=28%  Similarity=0.616  Sum_probs=39.8

Q ss_pred             CCcccccccccCCCC-------------ceecCCCcccchHHHHHHHhcCCCCCCCCCccc
Q 002641          161 PKDFVCPITTHIFDD-------------PVTLETGQTYERRAIQEWIERGNSSCPITRQKL  208 (897)
Q Consensus       161 ~~el~CpIC~~l~~d-------------PV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~  208 (897)
                      .++-.|.||++-|..             |-.++|||.+--.|+..|+++. .+||.||.++
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-QTCPICr~p~  344 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-QTCPICRRPV  344 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-cCCCcccCcc
Confidence            457789999998543             3678999999999999999964 4999999985

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.91  E-value=0.0019  Score=75.71  Aligned_cols=116  Identities=12%  Similarity=0.105  Sum_probs=89.3

Q ss_pred             EeeecccccEEEEecCCCCeEEEeCC-----cceeeccCCCCcEEEEEEeC---CEEEEEecCCeEEEEeCCCCcceeEE
Q 002641          778 YSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLIQ  849 (897)
Q Consensus       778 ~~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fsp---d~L~Sgs~DgtIrlWd~~~~~~~~i~  849 (897)
                      ...|+....++++.+.-++| +|++.     ..-..+.||...|+.+.|+|   |.+++|+-|..+..||++... .++.
T Consensus        75 ws~h~a~~~wiVsts~qkai-iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-~p~y  152 (1081)
T KOG0309|consen   75 WSPHPAKPYWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-RPFY  152 (1081)
T ss_pred             cccCCCCceeEEecCcchhh-hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC-ccee
Confidence            34455567788888776666 69975     45566789999999999986   599999999999999999875 5667


Q ss_pred             EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc--cceeeecc
Q 002641          850 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF--TYAIFIQV  895 (897)
Q Consensus       850 ~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~--~l~~l~~~  895 (897)
                      .+..-..+-+.|+|+--.-.+...+..+-|++||.+.|  .+..++..
T Consensus       153 s~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~  200 (1081)
T KOG0309|consen  153 STSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGH  200 (1081)
T ss_pred             eeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEeccc
Confidence            77666666788999864434445566788999999987  66666553

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.90  E-value=0.0061  Score=72.63  Aligned_cols=101  Identities=15%  Similarity=0.038  Sum_probs=74.3

Q ss_pred             cccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC-------EEEEEecCCeEEEEeCCCCcceeEEEee
Q 002641          782 AFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD-------KIFSGHSDGTIKVWTGRGSILHLIQQIR  852 (897)
Q Consensus       782 s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd-------~L~Sgs~DgtIrlWd~~~~~~~~i~~l~  852 (897)
                      ..+|.+++|+|.||+|.|-.+.  +...++ .-..++.+|+++||       ++++||.-| +-++.-+--.-+.-..+.
T Consensus        80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~  157 (846)
T KOG2066|consen   80 ILEGEYVASCSDDGKVVIGSLFTDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS  157 (846)
T ss_pred             ccCCceEEEecCCCcEEEeeccCCccceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence            4479999999999999988765  222222 23567899999996       799999999 655543311001112466


Q ss_pred             ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          853 EHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       853 gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      .-.++|.++.|.  |++++=++.+| |+|+|+.++
T Consensus       158 ~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~  189 (846)
T KOG2066|consen  158 EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTR  189 (846)
T ss_pred             cCccceEEEEec--CcEEEEecCCC-cEEEecccc
Confidence            667899999997  88999999888 799999887

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.90  E-value=0.00042  Score=78.04  Aligned_cols=53  Identities=21%  Similarity=0.401  Sum_probs=45.5

Q ss_pred             CCCCcccccccccCCCCceecCCCcccchHHHHHHHhc----CCCCCCCCCcccCCC
Q 002641          159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER----GNSSCPITRQKLSST  211 (897)
Q Consensus       159 ~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~----~~~~CP~Cr~~~~~~  211 (897)
                      +-..+..|-+|.+.-.||+...|.|+|||.||.+|...    .+.+||.|...++.+
T Consensus       532 enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  532 ENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             cccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            44567889999999999999999999999999998863    356899999887655

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.85  E-value=0.001  Score=77.83  Aligned_cols=109  Identities=15%  Similarity=0.126  Sum_probs=86.4

Q ss_pred             EeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeC-C-EEEEEecCCeEEEEeCCCCcceeEEEee
Q 002641          778 YSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFR-D-KIFSGHSDGTIKVWTGRGSILHLIQQIR  852 (897)
Q Consensus       778 ~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fsp-d-~L~Sgs~DgtIrlWd~~~~~~~~i~~l~  852 (897)
                      ..++......+++++.|..+..||++   ..+..+..-......|+|+- + .+...+..+-|++||.+.+. .++..++
T Consensus       120 ~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs-~pl~s~K  198 (1081)
T KOG0309|consen  120 INFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS-TPLCSLK  198 (1081)
T ss_pred             cccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCC-cceEEec
Confidence            33444466789999999999999997   56666666667778899984 3 44444667789999999885 7789999


Q ss_pred             ccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCc
Q 002641          853 EHTKAVTGLAILQS-GEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       853 gH~~~V~slafspd-g~~L~SgS~D~tIrlWdi~~~  887 (897)
                      +|...|+.++|..- ...+.+.+.|+||++||....
T Consensus       199 ~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  199 GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             ccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            99999999999754 356889999999999998654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=96.81  E-value=0.015  Score=67.72  Aligned_cols=112  Identities=9%  Similarity=-0.063  Sum_probs=74.6

Q ss_pred             EeeecccccEEEEec-CCCCeEEEeCC-----cceeeccCCCCcEEEEEEeCC--EEEEEec-C--CeEEEEeCCCCcce
Q 002641          778 YSPLAFEMVKVLSNG-HDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD--KIFSGHS-D--GTIKVWTGRGSILH  846 (897)
Q Consensus       778 ~~~~s~d~~~LaSgs-~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~-D--gtIrlWd~~~~~~~  846 (897)
                      ...+++||++|+..+ .+|...+|.+.     .....+..+.+.+....|+||  .|+..+. +  ..|.+||+.++.  
T Consensus       285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~--  362 (428)
T PRK01029        285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR--  362 (428)
T ss_pred             CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC--
Confidence            346789999877665 46766777542     224445556667788999997  5554443 3  468999999885  


Q ss_pred             eEEEeeccCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCCccceee
Q 002641          847 LIQQIREHTKAVTGLAILQSGEMLYSGSL---DKTARVRSNDSFTYAIF  892 (897)
Q Consensus       847 ~i~~l~gH~~~V~slafspdg~~L~SgS~---D~tIrlWdi~~~~l~~l  892 (897)
                       ...+......+....|+|||+.|+..+.   +..|.+||+.++....+
T Consensus       363 -~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L  410 (428)
T PRK01029        363 -DYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI  410 (428)
T ss_pred             -eEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence             2334333345678999999988775432   35788899988744333

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.75  E-value=0.001  Score=75.33  Aligned_cols=81  Identities=16%  Similarity=0.145  Sum_probs=65.7

Q ss_pred             ceeeccCCCCcEEEEEEeC--CEEEEEecCCeEEEEeCCCCc-----ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCC
Q 002641          805 LVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSI-----LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK  877 (897)
Q Consensus       805 ~l~~l~gH~~~V~sV~fsp--d~L~Sgs~DgtIrlWd~~~~~-----~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~  877 (897)
                      .+..+.||+..|..+.--.  +-++|+|.|+|||+|.++..-     ..|..++..|+++|.++.|..+-++++|+  ||
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            4566889999888885433  489999999999999998431     24677889999999999999888877755  89


Q ss_pred             cEEEEeCCCc
Q 002641          878 TARVRSNDSF  887 (897)
Q Consensus       878 tIrlWdi~~~  887 (897)
                      -|.+||.--|
T Consensus       805 giHlWDPFig  814 (1034)
T KOG4190|consen  805 GIHLWDPFIG  814 (1034)
T ss_pred             cceeeccccc
Confidence            9999997554

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.0013  Score=70.72  Aligned_cols=52  Identities=25%  Similarity=0.487  Sum_probs=43.8

Q ss_pred             CCCCcccccccccCCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCcccCCC
Q 002641          159 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSST  211 (897)
Q Consensus       159 ~l~~el~CpIC~~l~~dPV~l-~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~  211 (897)
                      ..++.-.||+|..--.+|.++ -.|..||..||..|... ...||+++.+....
T Consensus       296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v~  348 (357)
T KOG0826|consen  296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASVD  348 (357)
T ss_pred             CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchHH
Confidence            467788999999999999877 66999999999999984 55899998776543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=96.69  E-value=0.0058  Score=73.52  Aligned_cols=106  Identities=10%  Similarity=0.225  Sum_probs=84.4

Q ss_pred             ecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCCEEEEEec---------CCeEEEEeCCCCc-----
Q 002641          781 LAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHS---------DGTIKVWTGRGSI-----  844 (897)
Q Consensus       781 ~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd~L~Sgs~---------DgtIrlWd~~~~~-----  844 (897)
                      +-.+++.+..|...|+|.+-|.+  +.++++..|++.|..+....+.|+|||.         |..|+|||++.-.     
T Consensus       183 mR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI  262 (1118)
T KOG1275|consen  183 MRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI  262 (1118)
T ss_pred             EEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence            34467889999999999999998  8999999999999999999999999874         7789999998643     


Q ss_pred             ---------------------------cee------------EEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641          845 ---------------------------LHL------------IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSND  885 (897)
Q Consensus       845 ---------------------------~~~------------i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~  885 (897)
                                                 .+.            +..+..-+..+..+.++++|+.++-|-.+|.|.+|--+
T Consensus       263 ~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  263 QFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             ccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence                                       000            01111123358889999999999999999999999744


Q ss_pred             C
Q 002641          886 S  886 (897)
Q Consensus       886 ~  886 (897)
                      .
T Consensus       343 ~  343 (1118)
T KOG1275|consen  343 P  343 (1118)
T ss_pred             C
Confidence            3

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.68  E-value=0.0085  Score=65.17  Aligned_cols=113  Identities=13%  Similarity=0.166  Sum_probs=84.6

Q ss_pred             ccceeEeeecccccEEEEecCCCCeEEEeCC---c----ceeeccCCCC------------cEEEEEEeCC----EEEEE
Q 002641          773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR---E----LVHVDSSENG------------KVLSIACFRD----KIFSG  829 (897)
Q Consensus       773 ~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~----~l~~l~gH~~------------~V~sV~fspd----~L~Sg  829 (897)
                      .+....+.+...|.+|++|..+|.|-++.-.   +    ....++.|..            .|..+.|.++    .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            3666777888899999999999999988643   2    4455666643            5678888763    77777


Q ss_pred             ecCCeEEEEeCCCCc---------------------------------ceeEEEe-eccCCCeEEEEEccCCCEEEEEeC
Q 002641          830 HSDGTIKVWTGRGSI---------------------------------LHLIQQI-REHTKAVTGLAILQSGEMLYSGSL  875 (897)
Q Consensus       830 s~DgtIrlWd~~~~~---------------------------------~~~i~~l-~gH~~~V~slafspdg~~L~SgS~  875 (897)
                      .+|.+||+|.+....                                 ..+.+.+ .+|+-.|+++.++.|++.++|+. 
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence            899999999987432                                 0111121 35888999999999999888875 


Q ss_pred             CCcEEEEeCCC
Q 002641          876 DKTARVRSNDS  886 (897)
Q Consensus       876 D~tIrlWdi~~  886 (897)
                      |=.|.+|++.-
T Consensus       184 dLRINLWnlei  194 (433)
T KOG1354|consen  184 DLRINLWNLEI  194 (433)
T ss_pred             ceeeeeccccc
Confidence            77899998864

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=0.001  Score=70.58  Aligned_cols=47  Identities=19%  Similarity=0.509  Sum_probs=39.2

Q ss_pred             ccccccccCCC--Cce-ecCCCcccchHHHHHHHhcCCCCCCCCCcccCC
Q 002641          164 FVCPITTHIFD--DPV-TLETGQTYERRAIQEWIERGNSSCPITRQKLSS  210 (897)
Q Consensus       164 l~CpIC~~l~~--dPV-~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~  210 (897)
                      .-|.||+.-|.  |-+ ++||.|.|-..|+.+|+......||+||.++++
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            56999999875  333 569999999999999998666789999988753

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=96.60  E-value=0.019  Score=74.12  Aligned_cols=107  Identities=12%  Similarity=0.132  Sum_probs=76.2

Q ss_pred             eeeccccc-EEEEecCCCCeEEEeCC-cceeeccC--------------C--------CCcEEEEEEeCC--EEEEEecC
Q 002641          779 SPLAFEMV-KVLSNGHDSSADFWNHR-ELVHVDSS--------------E--------NGKVLSIACFRD--KIFSGHSD  832 (897)
Q Consensus       779 ~~~s~d~~-~LaSgs~DgtIklWd~~-~~l~~l~g--------------H--------~~~V~sV~fspd--~L~Sgs~D  832 (897)
                      +.+++++. .+++.+.++.|++||+. .....+.+              +        -.....++|+++  ++++-+.+
T Consensus       745 IavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N  824 (1057)
T PLN02919        745 ISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN  824 (1057)
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC
Confidence            45667776 55667778999999986 11111110              1        112457888886  78888889


Q ss_pred             CeEEEEeCCCCcceeEEEeecc--------------CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCcc
Q 002641          833 GTIKVWTGRGSILHLIQQIREH--------------TKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFT  888 (897)
Q Consensus       833 gtIrlWd~~~~~~~~i~~l~gH--------------~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~  888 (897)
                      ++|++||..++.   +.++.+.              -.....++++++|+.+++-+.+++|++||+.++.
T Consensus       825 ~rIrviD~~tg~---v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        825 HKIKKLDPATKR---VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             CEEEEEECCCCe---EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            999999998873   2333322              2357789999999999999999999999999873

>PRK01029 tolB translocation protein TolB; Provisional

Probab=96.55  E-value=0.02  Score=66.76  Aligned_cols=114  Identities=8%  Similarity=-0.050  Sum_probs=70.7

Q ss_pred             EeeecccccEEEEecC-----CCCeEEEeCC-----cceeeccCCCCcEEEEEEeCC--EEEEEe-cCCeEEEEeCC--C
Q 002641          778 YSPLAFEMVKVLSNGH-----DSSADFWNHR-----ELVHVDSSENGKVLSIACFRD--KIFSGH-SDGTIKVWTGR--G  842 (897)
Q Consensus       778 ~~~~s~d~~~LaSgs~-----DgtIklWd~~-----~~l~~l~gH~~~V~sV~fspd--~L~Sgs-~DgtIrlWd~~--~  842 (897)
                      .-.++|||++|+..+.     |..+.+|++.     .......++.+......|+||  .|+..+ .+|..++|.+.  .
T Consensus       235 ~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~  314 (428)
T PRK01029        235 MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDP  314 (428)
T ss_pred             ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcc
Confidence            4567899988876542     3334456653     122222233345567899998  455444 57776676543  2


Q ss_pred             CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCccceee
Q 002641          843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVRSNDSFTYAIF  892 (897)
Q Consensus       843 ~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D---~tIrlWdi~~~~l~~l  892 (897)
                      .. .....+..+...+....|+|||+.|+..+.+   ..|.+||+.++....+
T Consensus       315 ~g-~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L  366 (428)
T PRK01029        315 EG-QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL  366 (428)
T ss_pred             cc-cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc
Confidence            11 1234455556677889999999988876543   4789999988844433

>PRK00178 tolB translocation protein TolB; Provisional

Probab=96.52  E-value=0.034  Score=64.71  Aligned_cols=112  Identities=8%  Similarity=-0.015  Sum_probs=72.4

Q ss_pred             EeeecccccEEE-EecCCC--CeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEE-EEecCC--eEEEEeCCCCcceeE
Q 002641          778 YSPLAFEMVKVL-SNGHDS--SADFWNHR-ELVHVDSSENGKVLSIACFRD--KIF-SGHSDG--TIKVWTGRGSILHLI  848 (897)
Q Consensus       778 ~~~~s~d~~~La-Sgs~Dg--tIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~-Sgs~Dg--tIrlWd~~~~~~~~i  848 (897)
                      ...+++||++|+ +.+.++  .|.+||+. .....+..+.+......|+||  .++ +...+|  .|.+||+.++....+
T Consensus       247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l  326 (430)
T PRK00178        247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV  326 (430)
T ss_pred             CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence            456788998876 455555  57777876 445556667666778899997  444 433344  577778777642222


Q ss_pred             EEeeccCCCeEEEEEccCCCEEEEEeCC-C--cEEEEeCCCccceee
Q 002641          849 QQIREHTKAVTGLAILQSGEMLYSGSLD-K--TARVRSNDSFTYAIF  892 (897)
Q Consensus       849 ~~l~gH~~~V~slafspdg~~L~SgS~D-~--tIrlWdi~~~~l~~l  892 (897)
                       ++.+  ......+|+|||+.++..+.+ +  .|.+||+.++....+
T Consensus       327 -t~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l  370 (430)
T PRK00178        327 -TFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL  370 (430)
T ss_pred             -ecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc
Confidence             2222  334467899999998877643 3  578899988744433

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.43  E-value=0.0056  Score=66.49  Aligned_cols=115  Identities=16%  Similarity=0.137  Sum_probs=82.3

Q ss_pred             cccccceeEeeecccccEEEEecCCCCeEEEeCC---c--ceeeccCCC-----CcEEEEEEeCC---EEEEEecCCeEE
Q 002641          770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---E--LVHVDSSEN-----GKVLSIACFRD---KIFSGHSDGTIK  836 (897)
Q Consensus       770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~--~l~~l~gH~-----~~V~sV~fspd---~L~Sgs~DgtIr  836 (897)
                      ..|.-..+.+.+..|+..++|+ .|-.|-+|++.   +  -+-.++.|+     ..|++-.|+|.   .++-.|+.|+||
T Consensus       161 NaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr  239 (433)
T KOG1354|consen  161 NAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR  239 (433)
T ss_pred             ccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence            4456666777788888888886 68899999986   2  222334443     46888899994   777788899999


Q ss_pred             EEeCCCCc--------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641          837 VWTGRGSI--------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDS  886 (897)
Q Consensus       837 lWd~~~~~--------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~  886 (897)
                      +.|++..-              +....-|.+-...|+.+.|+++|++++|-+. -||++||+.-
T Consensus       240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm  302 (433)
T KOG1354|consen  240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM  302 (433)
T ss_pred             EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc
Confidence            99999431              0001112233457899999999999998754 4899999943

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.39  E-value=0.012  Score=68.83  Aligned_cols=108  Identities=15%  Similarity=0.124  Sum_probs=81.0

Q ss_pred             ceeEeeecccccEEEEecCCCCeEEEeCC-----------------cceeeccCCCCcEEEEEEeCC--EEEEEecCCeE
Q 002641          775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR-----------------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTI  835 (897)
Q Consensus       775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----------------~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtI  835 (897)
                      ...+..+..+..+||.||.||.++|..++                 .+-+++.||++.|.-+.|+.+  .|.|...+|.|
T Consensus        16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI   95 (1189)
T KOG2041|consen   16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI   95 (1189)
T ss_pred             eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence            34556677788899999999999998764                 145678899999999999975  88888899999


Q ss_pred             EEEeCCCCcceeEEEeec-cCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 002641          836 KVWTGRGSILHLIQQIRE-HTKAVTGLAILQSGEMLYSGSLDKTARVRS  883 (897)
Q Consensus       836 rlWd~~~~~~~~i~~l~g-H~~~V~slafspdg~~L~SgS~D~tIrlWd  883 (897)
                      -||=+-.+. -+-..... .++-|.+++|..||..+...=.||.|.+=.
T Consensus        96 iVWmlykgs-W~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs  143 (1189)
T KOG2041|consen   96 IVWMLYKGS-WCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS  143 (1189)
T ss_pred             EEEeeeccc-HHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence            999998774 11111222 344578999999998877666666655433

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=96.34  E-value=0.027  Score=59.54  Aligned_cols=101  Identities=7%  Similarity=-0.159  Sum_probs=77.7

Q ss_pred             EEEEecCCCCeEEEeCCcceeeccCCCCc--EEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEE-EeeccCCCeEEE
Q 002641          787 KVLSNGHDSSADFWNHRELVHVDSSENGK--VLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ-QIREHTKAVTGL  861 (897)
Q Consensus       787 ~LaSgs~DgtIklWd~~~~l~~l~gH~~~--V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~-~l~gH~~~V~sl  861 (897)
                      .+.-++.|.++++.++..-...+..|...  +.++++++|  +.++.+....|-.|.+.......+. .....++.-.+.
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~  209 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN  209 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence            36677899999999987333334556544  888999987  8888888899999999865423334 344455566789


Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          862 AILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       862 afspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      .|+.....++.++.||++.|||++.-
T Consensus       210 S~s~~~~~FAv~~Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  210 SFSENDLQFAVVFQDGTCAIYDVRNM  235 (344)
T ss_pred             eeccCcceEEEEecCCcEEEEEeccc
Confidence            99999999999999999999999874

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.0011  Score=52.44  Aligned_cols=45  Identities=20%  Similarity=0.193  Sum_probs=39.2

Q ss_pred             ccccccccCCCCceecCCCc-ccchHHHHHHHhcCCCCCCCCCccc
Q 002641          164 FVCPITTHIFDDPVTLETGQ-TYERRAIQEWIERGNSSCPITRQKL  208 (897)
Q Consensus       164 l~CpIC~~l~~dPV~l~CGH-tFCr~CI~~~~~~~~~~CP~Cr~~~  208 (897)
                      -.|.||.+--.|.|+..||| -.|..|-.+.|......||.||.++
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi   53 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI   53 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence            56999999988988899999 5799999998886677899999875

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.29  E-value=0.0062  Score=65.22  Aligned_cols=121  Identities=14%  Similarity=0.113  Sum_probs=85.2

Q ss_pred             cccccceeEeeecccccEEEEecCCCCeEEEeCC-----cceeeccCCC-----CcEEEEEEeCC---EEEEEecCCeEE
Q 002641          770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSEN-----GKVLSIACFRD---KIFSGHSDGTIK  836 (897)
Q Consensus       770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~-----~~V~sV~fspd---~L~Sgs~DgtIr  836 (897)
                      ..|.-..+...+..|...++|+ .|-.|-+|++.     -.+-.++.|+     ..|++..|+|.   .+.-.++.|+|+
T Consensus       169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            3455556667777777777776 67899999986     1233345564     35888899994   666678889999


Q ss_pred             EEeCCCCc--------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc--cceee
Q 002641          837 VWTGRGSI--------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF--TYAIF  892 (897)
Q Consensus       837 lWd~~~~~--------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~--~l~~l  892 (897)
                      +-|++...              ..-..-|.+-...|+.+.|+++|+++++-+. -|+++||++..  ++.+.
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi  318 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI  318 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee
Confidence            99999432              0011123344567889999999999998875 48999999875  55554

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.25  E-value=0.049  Score=60.33  Aligned_cols=188  Identities=20%  Similarity=0.198  Sum_probs=130.9

Q ss_pred             chhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchHHHHHHHHHHHhhhccccCcchhhHhhhcchhhHH
Q 002641          414 PKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVM  493 (897)
Q Consensus       414 p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~  493 (897)
                      -+-.|+--|+-++-.+|      ||..+++.||+.-++..+++.+.+-|..||.+|-.|.|....+-..+-....+..++
T Consensus        99 ~ke~ald~Le~lve~iD------nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   99 DKEDALDNLEELVEDID------NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             HHHHHHHHHHHHHHhhh------hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            34567777777777777      999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhc-CcchhHHHHHHHHHHHhhchhhhhHHHHHHhhccCccchhhHHHHHHHhcCcCCcchHHHH-HHhhhhhcCcc
Q 002641          494 ESFMAA-SDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGL-LLQLDLLAEPR  571 (897)
Q Consensus       494 ~ll~~~-~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~g~~~~m~~l~~~l~~~~~~~~~~~a~l-llqld~l~~~~  571 (897)
                      ..|-.. ...+|-.|+..++.|++-+.-. ..+|+    .-++   -..|...+|+-..+.+.-+-++ |++.=+..++.
T Consensus       173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g-~~~fl----~~~G---~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s  244 (342)
T KOG2160|consen  173 KILSSDDPNTVRTKALFAISSLIRNNKPG-QDEFL----KLNG---YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS  244 (342)
T ss_pred             HHHccCCCchHHHHHHHHHHHHHhcCcHH-HHHHH----hcCC---HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence            998874 5556788899999998876421 22222    1111   2344455555334444433333 33333334455


Q ss_pred             cccccHHHHHHHHHHHhhcCCchHHHHHHHHHHHhcccccccCC
Q 002641          572 KMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSG  615 (897)
Q Consensus       572 ~~s~~reea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~~s~sg  615 (897)
                      .-.+...+-....+..+.......+++.+-.+++.+--.++..+
T Consensus       245 ~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~  288 (342)
T KOG2160|consen  245 DEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRK  288 (342)
T ss_pred             hhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcc
Confidence            54566666666666666666555666666666665444444433

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.21  E-value=0.084  Score=59.76  Aligned_cols=116  Identities=9%  Similarity=0.064  Sum_probs=93.1

Q ss_pred             cccccceeEeeecccccEEEEecCCC-CeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcc
Q 002641          770 KGLRELRKYSPLAFEMVKVLSNGHDS-SADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL  845 (897)
Q Consensus       770 ~~~~~~~~~~~~s~d~~~LaSgs~Dg-tIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~  845 (897)
                      -++...+....+..++.-++.|..|| .+-|+|.+ ..++.+.+.-+.|.+|..++|  .++.+-....+-+.|+.+++.
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence            34556688888888888899999998 89999998 566777888899999999998  455555557888899999852


Q ss_pred             eeEEEeeccCCCeEEEEEccCCCEEEEEeCCC----cEEEEeCCCc
Q 002641          846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDK----TARVRSNDSF  887 (897)
Q Consensus       846 ~~i~~l~gH~~~V~slafspdg~~L~SgS~D~----tIrlWdi~~~  887 (897)
                      +.  .-+...+-|+.+.|+|++++|+-+-.+|    .|+++|+.++
T Consensus       436 ~~--idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         436 RL--IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             eE--ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence            22  2334456799999999999999887776    7899999987

>PRK04792 tolB translocation protein TolB; Provisional

Probab=96.18  E-value=0.053  Score=63.66  Aligned_cols=111  Identities=9%  Similarity=0.014  Sum_probs=69.3

Q ss_pred             EeeecccccEEEE-ecCCCC--eEEEeCC-cceeeccCCCCcEEEEEEeCC--E-EEEEecCCe--EEEEeCCCCcceeE
Q 002641          778 YSPLAFEMVKVLS-NGHDSS--ADFWNHR-ELVHVDSSENGKVLSIACFRD--K-IFSGHSDGT--IKVWTGRGSILHLI  848 (897)
Q Consensus       778 ~~~~s~d~~~LaS-gs~Dgt--IklWd~~-~~l~~l~gH~~~V~sV~fspd--~-L~Sgs~Dgt--IrlWd~~~~~~~~i  848 (897)
                      ...+++||+.|+. .+.++.  |.+||+. .....+..+........|+||  . +++...+|.  |.++|+.+++...+
T Consensus       266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L  345 (448)
T PRK04792        266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL  345 (448)
T ss_pred             CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE
Confidence            4567889997764 566675  6666765 445556666667788899997  4 444444454  55667766642221


Q ss_pred             EEeeccCCCeEEEEEccCCCEEEEEeC-CCc--EEEEeCCCcccee
Q 002641          849 QQIREHTKAVTGLAILQSGEMLYSGSL-DKT--ARVRSNDSFTYAI  891 (897)
Q Consensus       849 ~~l~gH~~~V~slafspdg~~L~SgS~-D~t--IrlWdi~~~~l~~  891 (897)
                       ++.++  .....+|+|||++|+..+. ++.  |.++|+.++..+.
T Consensus       346 -t~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~  388 (448)
T PRK04792        346 -TFEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV  388 (448)
T ss_pred             -ecCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence             23333  3445789999998877654 443  4556777774433

>smart00320 WD40 WD40 repeats

Probab=96.16  E-value=0.0085  Score=41.94  Aligned_cols=35  Identities=37%  Similarity=0.555  Sum_probs=30.4

Q ss_pred             ceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEe
Q 002641          805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT  839 (897)
Q Consensus       805 ~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd  839 (897)
                      ....+..|...|.++.|+++  .+++|+.|+.+++||
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34566788999999999986  999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=96.11  E-value=0.0062  Score=68.82  Aligned_cols=109  Identities=16%  Similarity=0.232  Sum_probs=83.9

Q ss_pred             eEeeecccccEEEEecCCCCeEEEeCC--------------c-ceeeccCCCC--cEEEEEEeC-C--EEEEEecCCeEE
Q 002641          777 KYSPLAFEMVKVLSNGHDSSADFWNHR--------------E-LVHVDSSENG--KVLSIACFR-D--KIFSGHSDGTIK  836 (897)
Q Consensus       777 ~~~~~s~d~~~LaSgs~DgtIklWd~~--------------~-~l~~l~gH~~--~V~sV~fsp-d--~L~Sgs~DgtIr  836 (897)
                      ....++.++.-+.++-.|--|.+++-.              . ...+++||.+  .|-.|.|.. .  +++|||.=|.|-
T Consensus       340 Tgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIF  419 (559)
T KOG1334|consen  340 TGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIF  419 (559)
T ss_pred             eeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEE
Confidence            344455556666666667777777532              1 2234889953  488999884 3  999999989999


Q ss_pred             EEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          837 VWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       837 lWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      +|+-+++  +.++.+.|-+.-|+|+.=+|---.|+|.|.|..||||-..+.
T Consensus       420 iW~K~t~--eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  420 IWDKKTG--EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             EEecchh--HHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            9999998  577888887778999998888889999999999999988554

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=96.00  E-value=0.037  Score=67.63  Aligned_cols=162  Identities=17%  Similarity=0.186  Sum_probs=125.3

Q ss_pred             ccccchhhhccchhHHHHHHhhhcchHHHHHHHHHHHhhhccccCcchhhHhhhcchhhHHHHHhhcCcchhHHHHHHHH
Q 002641          433 IVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLS  512 (897)
Q Consensus       433 ~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~  512 (897)
                      .|..+..+++..|.|+.|+++|+.++.+-.+.++++| +-+...+.+++.|++..-+++++.+|.+.+......++.+|+
T Consensus       278 ed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fL-kkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~  356 (708)
T PF05804_consen  278 EDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFL-KKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLF  356 (708)
T ss_pred             cChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHH-HHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            3445788999999999999999999988777766555 455666778999999999999999999988888888999999


Q ss_pred             HHHhhchhhhhHHHHHHhhccCccchhhHHHHHHHhcCcCCcchHHHHHHhhhhhcCcccccccHHHHHHHHHHHhhcCC
Q 002641          513 ELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSD  592 (897)
Q Consensus       513 el~~~~r~~~~~~~l~~i~~~g~~~~m~~l~~~l~~~~~~~~~~~a~lllqld~l~~~~~~s~~reea~~~~~~~l~~~~  592 (897)
                      -|+.-+.-.      ..+-+.|.+..+--||   .  .+..+.++-.+|.||-.-++.+.+-.|. +++..+++.|-...
T Consensus       357 NLSfd~~~R------~~mV~~GlIPkLv~LL---~--d~~~~~val~iLy~LS~dd~~r~~f~~T-dcIp~L~~~Ll~~~  424 (708)
T PF05804_consen  357 NLSFDPELR------SQMVSLGLIPKLVELL---K--DPNFREVALKILYNLSMDDEARSMFAYT-DCIPQLMQMLLENS  424 (708)
T ss_pred             HhCcCHHHH------HHHHHCCCcHHHHHHh---C--CCchHHHHHHHHHHhccCHhhHHHHhhc-chHHHHHHHHHhCC
Confidence            998865322      4667777777555554   2  3556677888999999987777777766 59999999887766


Q ss_pred             chHHHHHHHHHHHhc
Q 002641          593 YPAAQLAAAKTIVSL  607 (897)
Q Consensus       593 ~~~~q~~~~~~l~~l  607 (897)
                      .++++......+.||
T Consensus       425 ~~~v~~eliaL~iNL  439 (708)
T PF05804_consen  425 EEEVQLELIALLINL  439 (708)
T ss_pred             CccccHHHHHHHHHH
Confidence            666665544444444

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=95.99  E-value=0.0022  Score=71.78  Aligned_cols=44  Identities=25%  Similarity=0.542  Sum_probs=37.4

Q ss_pred             cccccccccCCCCce----ecCCCcccchHHHHHHHhcCCCCCCCCCcccC
Q 002641          163 DFVCPITTHIFDDPV----TLETGQTYERRAIQEWIERGNSSCPITRQKLS  209 (897)
Q Consensus       163 el~CpIC~~l~~dPV----~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~  209 (897)
                      --+||||++-|.+-|    ++.|.|+|-..|+..||.   .+||+||....
T Consensus       175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~  222 (493)
T KOG0804|consen  175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS  222 (493)
T ss_pred             CCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence            348999999998877    469999999999999986   48999987654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=95.96  E-value=0.077  Score=68.58  Aligned_cols=112  Identities=9%  Similarity=0.044  Sum_probs=75.9

Q ss_pred             eeecc-cccEEEEecCCCCeEEEeCC-cceeeccCC---------------CCcEEEEEEeCC---EEEEEecCCeEEEE
Q 002641          779 SPLAF-EMVKVLSNGHDSSADFWNHR-ELVHVDSSE---------------NGKVLSIACFRD---KIFSGHSDGTIKVW  838 (897)
Q Consensus       779 ~~~s~-d~~~LaSgs~DgtIklWd~~-~~l~~l~gH---------------~~~V~sV~fspd---~L~Sgs~DgtIrlW  838 (897)
                      +.+++ ++..+++.+.++.|++||.. ..+.++.+.               -...+.++|+|+   ++++-+.++.|++|
T Consensus       688 Va~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~  767 (1057)
T PLN02919        688 VCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRAL  767 (1057)
T ss_pred             EEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEE
Confidence            45555 56677888888999999976 333333221               123557899986   56666778999999


Q ss_pred             eCCCCcceeEE-----------Eeec--------cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCccce
Q 002641          839 TGRGSILHLIQ-----------QIRE--------HTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYA  890 (897)
Q Consensus       839 d~~~~~~~~i~-----------~l~g--------H~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l~  890 (897)
                      |+.++....+.           .+..        .-.....++|+++|+.+++-+.+++|++||..++.+.
T Consensus       768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~  838 (1057)
T PLN02919        768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT  838 (1057)
T ss_pred             ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence            99876311111           0100        1113468999999999999999999999999887443

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=95.95  E-value=0.0089  Score=73.55  Aligned_cols=72  Identities=25%  Similarity=0.497  Sum_probs=66.1

Q ss_pred             CCCCcccccccccCCCCceecC-CCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHHHHhCC
Q 002641          159 TPPKDFVCPITTHIFDDPVTLE-TGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP  232 (897)
Q Consensus       159 ~l~~el~CpIC~~l~~dPV~l~-CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~~~~~~  232 (897)
                      +.|++|.-||...+|.|||++| .|++-||+-|.+++-. ..+-|.||.+++.+.+ .||-.|++-|+.|..++.
T Consensus       866 dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v-~pn~eLK~kI~~~~~ek~  938 (943)
T KOG2042|consen  866 DVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMV-SPNEELKAKIRCWIKEKR  938 (943)
T ss_pred             cCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhc-CCCHHHHHHHHHHHHHhh
Confidence            6999999999999999999997 9999999999998875 4578999999999999 699999999999987654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.89  E-value=0.02  Score=63.53  Aligned_cols=80  Identities=10%  Similarity=-0.010  Sum_probs=68.8

Q ss_pred             ceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEE
Q 002641          805 LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTAR  880 (897)
Q Consensus       805 ~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIr  880 (897)
                      ....+.+|...|..++|+|.   ++..++.+.+|+|.|+++.  ..+..+..| ..+++++|+-|. ++|+.|-..|.|.
T Consensus       185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl  261 (463)
T KOG1645|consen  185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL  261 (463)
T ss_pred             hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc--eeeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence            34456778889999999994   7999999999999999998  467778877 889999999875 7888888999999


Q ss_pred             EEeCCCc
Q 002641          881 VRSNDSF  887 (897)
Q Consensus       881 lWdi~~~  887 (897)
                      ++|++..
T Consensus       262 vyD~R~~  268 (463)
T KOG1645|consen  262 VYDMRQP  268 (463)
T ss_pred             EEEccCC
Confidence            9999874

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=95.87  E-value=0.012  Score=64.02  Aligned_cols=106  Identities=20%  Similarity=0.181  Sum_probs=81.5

Q ss_pred             EEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEeC--CEEEEEecCCeEEEEeCCCC---cceeEEEeeccCCCeEEEE
Q 002641          789 LSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGS---ILHLIQQIREHTKAVTGLA  862 (897)
Q Consensus       789 aSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fsp--d~L~Sgs~DgtIrlWd~~~~---~~~~i~~l~gH~~~V~sla  862 (897)
                      ++.+.+-.|-+-|+. .....|. .++.|+++.|..  ++++.|...|.|-..|++..   +..+.+.+- |..+|+++.
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq  305 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQ  305 (425)
T ss_pred             ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhh
Confidence            667777778888876 3334443 678899999986  39999999999999999864   234444444 899999998


Q ss_pred             Ecc-CCCEEEEEeCCCcEEEEeCCCc-c---ceeeeccc
Q 002641          863 ILQ-SGEMLYSGSLDKTARVRSNDSF-T---YAIFIQVV  896 (897)
Q Consensus       863 fsp-dg~~L~SgS~D~tIrlWdi~~~-~---l~~l~~~~  896 (897)
                      ... ++.+|.+.+.+|+|++||.+-- +   ++.+..+|
T Consensus       306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHv  344 (425)
T KOG2695|consen  306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHV  344 (425)
T ss_pred             hhccccceEeeccCcCceeEeeehhhhcccceeeeeccc
Confidence            776 6889999999999999999875 4   56665554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=95.84  E-value=0.033  Score=59.82  Aligned_cols=112  Identities=13%  Similarity=0.148  Sum_probs=82.1

Q ss_pred             cceeEeeecccccEEEEecCCCCeEEEeCC-------cceeeccCCCC------------cEEEEEEeCC----EEEEEe
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR-------ELVHVDSSENG------------KVLSIACFRD----KIFSGH  830 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-------~~l~~l~gH~~------------~V~sV~fspd----~L~Sgs  830 (897)
                      .....+.+...|.|+++|...|.|-++.-.       +....|++|..            .|..+.|..+    .++-..
T Consensus        27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst  106 (460)
T COG5170          27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST  106 (460)
T ss_pred             ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence            556667778889999999999999998743       34555777753            4678888753    677778


Q ss_pred             cCCeEEEEeCCCCc----------------------------------------ceeEEEe-eccCCCeEEEEEccCCCE
Q 002641          831 SDGTIKVWTGRGSI----------------------------------------LHLIQQI-REHTKAVTGLAILQSGEM  869 (897)
Q Consensus       831 ~DgtIrlWd~~~~~----------------------------------------~~~i~~l-~gH~~~V~slafspdg~~  869 (897)
                      .|.+||+|.+....                                        ..+.+.. ..|.-.+.++.|..|.+.
T Consensus       107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et  186 (460)
T COG5170         107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET  186 (460)
T ss_pred             CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence            99999999987542                                        0001111 357778899999999888


Q ss_pred             EEEEeCCCcEEEEeCCC
Q 002641          870 LYSGSLDKTARVRSNDS  886 (897)
Q Consensus       870 L~SgS~D~tIrlWdi~~  886 (897)
                      ++|+. |-.|.+|++.-
T Consensus       187 ~lSaD-dLrINLWnl~i  202 (460)
T COG5170         187 LLSAD-DLRINLWNLEI  202 (460)
T ss_pred             eeecc-ceeeeeccccc
Confidence            87764 77899998764

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.82  E-value=0.0058  Score=63.24  Aligned_cols=52  Identities=17%  Similarity=0.484  Sum_probs=45.4

Q ss_pred             CcccccccccCCCCce----ecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCC
Q 002641          162 KDFVCPITTHIFDDPV----TLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP  214 (897)
Q Consensus       162 ~el~CpIC~~l~~dPV----~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~  214 (897)
                      ..|.||+|.+.+.+.+    .-+|||.||..|.++++.. ...||+|..++..++++
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI  275 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDII  275 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceE
Confidence            6799999999999865    3399999999999998874 56899999999988885

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=95.77  E-value=0.056  Score=58.65  Aligned_cols=99  Identities=16%  Similarity=0.090  Sum_probs=71.6

Q ss_pred             ccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCccee
Q 002641          773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHL  847 (897)
Q Consensus       773 ~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~  847 (897)
                      ..++...|-......+...+.|+.|.+|++.  +--..+......+.++.||||   +|.+...|-.|.||.+.+..   
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~---  125 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK---  125 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce---
Confidence            3455555555455566777889999999987  333344556778999999997   78888889999999999873   


Q ss_pred             EEEeeccCCCeEEEEEccCCCEEEEEe
Q 002641          848 IQQIREHTKAVTGLAILQSGEMLYSGS  874 (897)
Q Consensus       848 i~~l~gH~~~V~slafspdg~~L~SgS  874 (897)
                      ..-+.--+..+..++|+|||++.+-.+
T Consensus       126 ~~~~~~pK~~~kg~~f~~dg~f~ai~s  152 (447)
T KOG4497|consen  126 GYLLPHPKTNVKGYAFHPDGQFCAILS  152 (447)
T ss_pred             eEEecccccCceeEEECCCCceeeeee
Confidence            222222223467889999999877766

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.77  E-value=0.025  Score=58.85  Aligned_cols=101  Identities=16%  Similarity=0.153  Sum_probs=73.2

Q ss_pred             ccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeC-C--EEEEEecCCeEEEEeCCCCcceeEEEeeccC-CC
Q 002641          785 MVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHT-KA  857 (897)
Q Consensus       785 ~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fsp-d--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~-~~  857 (897)
                      +..++.|+.||.|.+|+..   .....+.+-...|-+..-.. +  +..+|+.||.||.|++...  +.+.....|+ ..
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~--k~~g~~g~h~~~~  147 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN--KVLGYVGQHNFES  147 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC--ceeeeeccccCCC
Confidence            5678899999999999976   22222222233333332222 3  8889999999999999987  4566666777 67


Q ss_pred             eEEEEEccCCCEEEEE--eCCCcEEEEeCCCc
Q 002641          858 VTGLAILQSGEMLYSG--SLDKTARVRSNDSF  887 (897)
Q Consensus       858 V~slafspdg~~L~Sg--S~D~tIrlWdi~~~  887 (897)
                      +.....+..++.+.++  |.|..++.||+..-
T Consensus       148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            7777777778888888  88999999988653

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.68  E-value=0.055  Score=64.01  Aligned_cols=113  Identities=16%  Similarity=0.146  Sum_probs=83.5

Q ss_pred             cceeEeeecccccEEEEecCCCCeEEEeCC-cc--eeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCccee-
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR-EL--VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL-  847 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~--l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~-  847 (897)
                      ..+.+..++..+.+++.|+.-|.+.+++-. ..  .....+-.+.+.....|++  +.+.|+..|.|-++.+..+.... 
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            455667777789999999999999999955 22  2223334455555667775  88888889999999887643111 


Q ss_pred             --EEEe-eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641          848 --IQQI-REHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDS  886 (897)
Q Consensus       848 --i~~l-~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~  886 (897)
                        +..+ +.|...|++++|+++|..+++|..-|+|.+-.+.+
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence              1122 23677899999999999999999999998877666

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=95.60  E-value=0.12  Score=59.76  Aligned_cols=105  Identities=13%  Similarity=0.121  Sum_probs=73.7

Q ss_pred             eEeeecccccEE--EEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEecC---CeEEEEeCCCCcceeE
Q 002641          777 KYSPLAFEMVKV--LSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSD---GTIKVWTGRGSILHLI  848 (897)
Q Consensus       777 ~~~~~s~d~~~L--aSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~D---gtIrlWd~~~~~~~~i  848 (897)
                      ....++++++-+  +-|-.-.++.|+|.+ .++..+-  .++=.++-|+|.  +++-+|.+   |.|-+||+.+.  +++
T Consensus       274 hdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~--K~i  349 (566)
T KOG2315|consen  274 HDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR--KLI  349 (566)
T ss_pred             eEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccch--hhc
Confidence            333344455433  334455788899988 6665553  455567889985  55555543   89999999986  577


Q ss_pred             EEeeccCCCeEEEEEccCCCEEEEEeC------CCcEEEEeCCCc
Q 002641          849 QQIREHTKAVTGLAILQSGEMLYSGSL------DKTARVRSNDSF  887 (897)
Q Consensus       849 ~~l~gH~~~V~slafspdg~~L~SgS~------D~tIrlWdi~~~  887 (897)
                      ..+..-..  +.+.|+|||++|+++++      |..++||+..+.
T Consensus       350 ~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  350 AKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             cccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            77765444  55799999999999975      578999998775

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.59  E-value=0.041  Score=64.35  Aligned_cols=76  Identities=18%  Similarity=0.118  Sum_probs=64.5

Q ss_pred             CCcEEEEEEeC--CEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeE-EEEEccCCCEEEEEeCCCcEEEEeCCCc-c
Q 002641          813 NGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT-GLAILQSGEMLYSGSLDKTARVRSNDSF-T  888 (897)
Q Consensus       813 ~~~V~sV~fsp--d~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~-slafspdg~~L~SgS~D~tIrlWdi~~~-~  888 (897)
                      .-.+..+.|+|  |++|.+-.+|.|-+..+.-   +-+.++.-|...|+ +++|.|||+.|+.|=.||+|++-|+.+| .
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW---QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEecc---ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            34577889999  4999999999998888873   35788887888777 9999999999999999999999999988 5


Q ss_pred             cee
Q 002641          889 YAI  891 (897)
Q Consensus       889 l~~  891 (897)
                      +..
T Consensus        97 l~~   99 (665)
T KOG4640|consen   97 LVS   99 (665)
T ss_pred             eec
Confidence            443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=95.50  E-value=0.063  Score=62.68  Aligned_cols=72  Identities=15%  Similarity=0.054  Sum_probs=59.7

Q ss_pred             cccceeEeeecccccEEEEecCCCCeEEEeCCcceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCC
Q 002641          772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS  843 (897)
Q Consensus       772 ~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~  843 (897)
                      +...+.+...+++..+++.|+.||+|.+||....+..+.-+.-.++.++|+|+  .++.|+.-|.+.+||+.-.
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            34567888889999999999999999999988444444455566889999997  9999999999999998743

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=95.49  E-value=0.075  Score=49.23  Aligned_cols=118  Identities=12%  Similarity=0.153  Sum_probs=89.2

Q ss_pred             hHHHHhhHHHHHHHHHhhcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchHHHHHHH
Q 002641          386 TLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAA  465 (897)
Q Consensus       386 ~i~~~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~  465 (897)
                      ++.+.+.++.|+..|..++..       -+..|+..|.-+-..+     ..+...++..|+++.++..+..++.+-+..+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~-------~~~~a~~~l~~l~~~~-----~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a   69 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDEN-------VQREAAWALSNLSAGN-----NDNIQAVVEAGGLPALVQLLKSEDEEVVKAA   69 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHH-------HHHHHHHHHHHHhcCC-----HHHHHHHHHCCChHHHHHHHhCCCHHHHHHH
Confidence            466788899999999876533       2345666666665543     3477788889999999999999988888877


Q ss_pred             HHHHhhhccccCcchhhHhhhcchhhHHHHHhhcCcchhHHHHHHHHHHH
Q 002641          466 VGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELV  515 (897)
Q Consensus       466 ~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~  515 (897)
                      +..|-.-.+.....+..+.+..-+..++++|...+...+..++.+|..|.
T Consensus        70 ~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          70 LWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            66655444444466777888889999999999888888888888887653

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF04641 Rtf2: Rtf2 RING-finger

Probab=95.48  E-value=0.011  Score=64.20  Aligned_cols=54  Identities=22%  Similarity=0.555  Sum_probs=42.9

Q ss_pred             CCCCcccccccccCCCCc---eec-CCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCC
Q 002641          159 TPPKDFVCPITTHIFDDP---VTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP  214 (897)
Q Consensus       159 ~l~~el~CpIC~~l~~dP---V~l-~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~  214 (897)
                      .-...|.|||++..|..-   |.+ +|||.|+..|+.+.-  ....||+|++++...++|
T Consensus       109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI  166 (260)
T PF04641_consen  109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDII  166 (260)
T ss_pred             cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEE
Confidence            356689999999999542   233 999999999999873  244799999999887764

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.44  E-value=0.42  Score=44.75  Aligned_cols=96  Identities=18%  Similarity=0.238  Sum_probs=66.3

Q ss_pred             eeecccc-cEEEEecCCCCeEEEeCCcceeeccCCCCcEEEEEEeC-CEEEEEecCCeEEEEeCCCCcceeEEEeeccCC
Q 002641          779 SPLAFEM-VKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFR-DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTK  856 (897)
Q Consensus       779 ~~~s~d~-~~LaSgs~DgtIklWd~~~~l~~l~gH~~~V~sV~fsp-d~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~  856 (897)
                      ..+..+| +.|+.||.|..||+|+-...+..+.. .+.|.+++-.. ..|+-+-..|||-+|+-...    +...+....
T Consensus         8 ~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R----lWRiKSK~~   82 (111)
T PF14783_consen    8 FDFDGDGENELLVGSDDFEIRVFKGDEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQR----LWRIKSKNQ   82 (111)
T ss_pred             EecCCCCcceEEEecCCcEEEEEeCCcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcce----eeeeccCCC
Confidence            3334443 47999999999999998877666654 45566666655 59999999999999986543    334443333


Q ss_pred             CeEEEEEc-cC--C-CEEEEEeCCCcEE
Q 002641          857 AVTGLAIL-QS--G-EMLYSGSLDKTAR  880 (897)
Q Consensus       857 ~V~slafs-pd--g-~~L~SgS~D~tIr  880 (897)
                       ++++++. .+  | ..|++|-.+|.|-
T Consensus        83 -~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   83 -VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence             5666554 33  3 4799998888764

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.41  E-value=0.64  Score=51.52  Aligned_cols=201  Identities=19%  Similarity=0.197  Sum_probs=131.1

Q ss_pred             HhccCChHHHHHHHHHHHHhhhccHHHHHHhhhccchHHHHHHHHhcCchH----HHHHHHHhCCChhh---HHHHh--h
Q 002641          322 LFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLE----AVVLIDLLRPSTRT---LIEMD--M  392 (897)
Q Consensus       322 L~~sl~~~vlk~a~~~l~el~s~~e~~~~~i~~~~~~~~~i~~llk~~~~e----a~~LL~~L~~~~~~---i~~~~--~  392 (897)
                      |.++.+..|.+-+...|+.+-...+. ++.+. ..+.+.-+|.++|++..+    +...|-.+.-....   +.+-+  +
T Consensus       175 LakskdirvqrnatgaLlnmThs~En-Rr~LV-~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~l  252 (550)
T KOG4224|consen  175 LAKSKDIRVQRNATGALLNMTHSREN-RRVLV-HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKL  252 (550)
T ss_pred             hcccchhhHHHHHHHHHHHhhhhhhh-hhhhh-ccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccch
Confidence            67788888888888888888655443 33333 235578899999998333    33455555544433   33444  7


Q ss_pred             HHHHHHHHHhhcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchHHHHHHHHHHHhhh
Q 002641          393 MESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRC  472 (897)
Q Consensus       393 ~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c  472 (897)
                      +|+|+.+...++++ .|.     -|++||=.   .++|    .+--..++..|++|.+++.+.+.. .--+.+--.-+++
T Consensus       253 v~~Lv~Lmd~~s~k-vkc-----qA~lALrn---lasd----t~Yq~eiv~ag~lP~lv~Llqs~~-~plilasVaCIrn  318 (550)
T KOG4224|consen  253 VPALVDLMDDGSDK-VKC-----QAGLALRN---LASD----TEYQREIVEAGSLPLLVELLQSPM-GPLILASVACIRN  318 (550)
T ss_pred             HHHHHHHHhCCChH-HHH-----HHHHHHhh---hccc----chhhhHHHhcCCchHHHHHHhCcc-hhHHHHHHHHHhh
Confidence            89999999988776 332     24555431   1222    235567899999999999996432 2222221122355


Q ss_pred             ccccCcchhhHhhhcchhhHHHHHhhc-CcchhHHHHHHHHHHHhhc-------hhhhhHHHHHHhhccCccch
Q 002641          473 MQEDGKCRNSIADKAELAPVMESFMAA-SDGERFEIVCFLSELVKLN-------RRTFNEQILHIIKDEGTYSS  538 (897)
Q Consensus       473 ~~~~~~cr~~~~~~~~~~~~~~ll~~~-~~~~~~~~~~~l~el~~~~-------r~~~~~~~l~~i~~~g~~~~  538 (897)
                      +....---..|+|..=+.|++++|+-+ ++..++.|+..|-.|--..       |.+++++.|.++--.|+++.
T Consensus       319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsv  392 (550)
T KOG4224|consen  319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSV  392 (550)
T ss_pred             cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhH
Confidence            555566667899999999999999985 5558999999999988755       34455555666655555443

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.38  E-value=0.048  Score=60.33  Aligned_cols=64  Identities=20%  Similarity=0.350  Sum_probs=50.5

Q ss_pred             cccccccccCCC------CceecCCCcccchHHHHHHHhcCCCCCCCCCccc--CC---CCCCcccHHHHHHHHHH
Q 002641          163 DFVCPITTHIFD------DPVTLETGQTYERRAIQEWIERGNSSCPITRQKL--SS---TKLPKTNYVLKRLIASW  227 (897)
Q Consensus       163 el~CpIC~~l~~------dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~--~~---~~~~~pN~~L~~li~~~  227 (897)
                      .+.|-||.+.|.      -|-.+.|||++|..|+...+......||.||.+.  ..   ..+ ..|+.+-.+++..
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l-~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSL-QKNFALLQAIEHM   77 (296)
T ss_pred             CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhh-hhhHHHHHHHHHH
Confidence            356888888876      3777899999999999988876666899999984  22   235 5788888888876

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=95.37  E-value=0.37  Score=51.83  Aligned_cols=37  Identities=8%  Similarity=0.090  Sum_probs=31.7

Q ss_pred             CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-ccee
Q 002641          855 TKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAI  891 (897)
Q Consensus       855 ~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~  891 (897)
                      ...|..+..||||..|++...+|.|.+|++-+- .++.
T Consensus       229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~  266 (282)
T PF15492_consen  229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS  266 (282)
T ss_pred             CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence            457899999999999999999999999999775 4433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=95.24  E-value=0.44  Score=54.48  Aligned_cols=110  Identities=11%  Similarity=0.018  Sum_probs=73.2

Q ss_pred             ceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--E-EEEEecCCeEEEEeCCCCcceeEE
Q 002641          775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--K-IFSGHSDGTIKVWTGRGSILHLIQ  849 (897)
Q Consensus       775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~-L~Sgs~DgtIrlWd~~~~~~~~i~  849 (897)
                      ......+++||+++...+.||.|.+||+.  +.+..+.... ....+++++|  + ++++..++++.++|.++.  +.+.
T Consensus        38 ~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl--e~v~  114 (369)
T PF02239_consen   38 PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETL--EPVK  114 (369)
T ss_dssp             EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT----EEE
T ss_pred             ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccc--ccee
Confidence            34556688999999999999999999987  6776665543 4678999997  4 445567899999999987  4555


Q ss_pred             Eeec-------cCCCeEEEEEccCCCEEEEEeCC-CcEEEEeCCCc
Q 002641          850 QIRE-------HTKAVTGLAILQSGEMLYSGSLD-KTARVRSNDSF  887 (897)
Q Consensus       850 ~l~g-------H~~~V~slafspdg~~L~SgS~D-~tIrlWdi~~~  887 (897)
                      .+..       ....|..+..+|.+..++..-.| +.|-+-|....
T Consensus       115 ~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~  160 (369)
T PF02239_consen  115 TIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP  160 (369)
T ss_dssp             EEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred             ecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence            5543       23467888888988866666655 66655576554

...

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.21  E-value=0.0056  Score=64.20  Aligned_cols=54  Identities=22%  Similarity=0.498  Sum_probs=43.6

Q ss_pred             CCcccccccccCCCCce----------ecCCCcccchHHHHHHHhcC-CCCCCCCCcccCCCCCC
Q 002641          161 PKDFVCPITTHIFDDPV----------TLETGQTYERRAIQEWIERG-NSSCPITRQKLSSTKLP  214 (897)
Q Consensus       161 ~~el~CpIC~~l~~dPV----------~l~CGHtFCr~CI~~~~~~~-~~~CP~Cr~~~~~~~~~  214 (897)
                      .++-.|.||++-+.+-+          .+.|+|+|-..||..|.--| ..+||.|++.+.....+
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf  286 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF  286 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence            35678999999887666          67999999999999997644 45899999888766553

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.94  E-value=0.014  Score=65.08  Aligned_cols=49  Identities=18%  Similarity=0.407  Sum_probs=40.8

Q ss_pred             CCcccccccccCCCCce-----e---cCCCcccchHHHHHHHhcC------CCCCCCCCcccC
Q 002641          161 PKDFVCPITTHIFDDPV-----T---LETGQTYERRAIQEWIERG------NSSCPITRQKLS  209 (897)
Q Consensus       161 ~~el~CpIC~~l~~dPV-----~---l~CGHtFCr~CI~~~~~~~------~~~CP~Cr~~~~  209 (897)
                      -.+..|-||++...+++     .   .+|-|+||..||..|-...      .+.||.||....
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            55889999999999988     3   4799999999999998532      357999998754

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.85  E-value=0.11  Score=57.31  Aligned_cols=50  Identities=20%  Similarity=0.464  Sum_probs=36.7

Q ss_pred             ccccccccCCCCce---ec-CCCcccchHHHHHHHhcCC--CCCCCCCcccCCCCC
Q 002641          164 FVCPITTHIFDDPV---TL-ETGQTYERRAIQEWIERGN--SSCPITRQKLSSTKL  213 (897)
Q Consensus       164 l~CpIC~~l~~dPV---~l-~CGHtFCr~CI~~~~~~~~--~~CP~Cr~~~~~~~~  213 (897)
                      ..|.||.+.+-.--   -+ .|||+|--.|+++|++...  ..||+|+-.+..+.+
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~   60 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHV   60 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceee
Confidence            46999966553211   13 5999999999999999653  479999966655555

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=94.56  E-value=0.75  Score=51.98  Aligned_cols=118  Identities=15%  Similarity=0.094  Sum_probs=78.7

Q ss_pred             ceeEeeecccccEE-EEecCCCCeEEEeCC------cc---eeeccC-C--CCcEEEEEEeCC---EEEEEecCCeEEEE
Q 002641          775 LRKYSPLAFEMVKV-LSNGHDSSADFWNHR------EL---VHVDSS-E--NGKVLSIACFRD---KIFSGHSDGTIKVW  838 (897)
Q Consensus       775 ~~~~~~~s~d~~~L-aSgs~DgtIklWd~~------~~---l~~l~g-H--~~~V~sV~fspd---~L~Sgs~DgtIrlW  838 (897)
                      ..+-..+.++++++ +..-.+++|.++++.      +.   +.++.. .  ......+.++||   +++|.-.+++|-+|
T Consensus       193 GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf  272 (345)
T PF10282_consen  193 GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVF  272 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEE
T ss_pred             CCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEE
Confidence            34456677787766 455667889988865      11   112211 1  236889999998   55556667899999


Q ss_pred             eCC--CCcceeEEEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeC--CCccceee
Q 002641          839 TGR--GSILHLIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVRSN--DSFTYAIF  892 (897)
Q Consensus       839 d~~--~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS-~D~tIrlWdi--~~~~l~~l  892 (897)
                      ++.  ++.+..+..+.........++|+|+|++|+.+. .+++|.+|++  .+|.+...
T Consensus       273 ~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~  331 (345)
T PF10282_consen  273 DLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV  331 (345)
T ss_dssp             EECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             EEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence            994  455566666665566689999999999999887 5679999976  46655443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=94.54  E-value=0.016  Score=63.71  Aligned_cols=48  Identities=19%  Similarity=0.421  Sum_probs=40.0

Q ss_pred             cccccccCCCCceecCCCcccchHHHHHHHhcC-CCCCCCCCcccCCCC
Q 002641          165 VCPITTHIFDDPVTLETGQTYERRAIQEWIERG-NSSCPITRQKLSSTK  212 (897)
Q Consensus       165 ~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~-~~~CP~Cr~~~~~~~  212 (897)
                      .|.||-+-=+|=-+-+|||-.|-.|+..|.... ..+||.||-.+....
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte  419 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE  419 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence            699999988886666999999999999998643 668999998876544

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=94.32  E-value=0.17  Score=46.88  Aligned_cols=79  Identities=9%  Similarity=0.074  Sum_probs=66.5

Q ss_pred             hhccchhHHHHHHhhhcchHHHHHHHHHHHhhhccccCcchhhHhhhcchhhHHHHHhhcCcchhHHHHHHHHHHHhhc
Q 002641          440 TIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLN  518 (897)
Q Consensus       440 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~~~~  518 (897)
                      .++..|+++.|++.+..++.+.|..++..|-.-......++..+.+..-+..++++|...+...+..++..|..|...+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            3578899999999999999888888777765444444788888899899999999999888889999999999998765

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=94.26  E-value=0.18  Score=60.19  Aligned_cols=100  Identities=17%  Similarity=0.121  Sum_probs=79.8

Q ss_pred             ccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC-----C---------EEEEEecCCeEEEEeCCCCcceeE
Q 002641          785 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR-----D---------KIFSGHSDGTIKVWTGRGSILHLI  848 (897)
Q Consensus       785 ~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp-----d---------~L~Sgs~DgtIrlWd~~~~~~~~i  848 (897)
                      +..||-|+. ..|.+-|..  +.+..+.-|...|+.|.|.|     |         +|+++.-.|.|-+||...+  ..+
T Consensus        26 ~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~--s~~  102 (1062)
T KOG1912|consen   26 SGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA--SVI  102 (1062)
T ss_pred             cceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh--hhh
Confidence            446666654 466777866  88999999999999999986     1         5777777899999999987  456


Q ss_pred             EEeeccCCCeEEEEEccC---C-CEEEEEeCCCcEEEEeCCCc
Q 002641          849 QQIREHTKAVTGLAILQS---G-EMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       849 ~~l~gH~~~V~slafspd---g-~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ..+..|.++|..+.|-+.   . ..|+.-..-.++-+||..+|
T Consensus       103 ~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG  145 (1062)
T KOG1912|consen  103 NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG  145 (1062)
T ss_pred             hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC
Confidence            778889999999999763   4 45666667789999999988

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.21  E-value=0.15  Score=59.90  Aligned_cols=89  Identities=11%  Similarity=-0.021  Sum_probs=69.4

Q ss_pred             cceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEE-EEEEeCC--EEEEEecCCeEEEEeCCCCcceeEE
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVL-SIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ  849 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~-sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~  849 (897)
                      .......++|....||.+..+|.+-+..+. +.+.++..|+.+|+ +++|.||  .|+.|-.||+|++.|+.++.  .+.
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~--~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG--RLV   98 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC--cee
Confidence            445566677888899999999999888887 77778877877777 9999998  99999999999999999873  333


Q ss_pred             E-eeccCCCeEEEEEc
Q 002641          850 Q-IREHTKAVTGLAIL  864 (897)
Q Consensus       850 ~-l~gH~~~V~slafs  864 (897)
                      . ...-...|+++-|+
T Consensus        99 ~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWD  114 (665)
T ss_pred             ccccccccchheeecc
Confidence            3 22234567777775

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.13  E-value=0.028  Score=61.04  Aligned_cols=48  Identities=15%  Similarity=0.167  Sum_probs=41.2

Q ss_pred             CcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCC
Q 002641          162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS  210 (897)
Q Consensus       162 ~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~  210 (897)
                      ++-.||||.---...|..||||.-|+.||.+++-. .+.|=.|+..+..
T Consensus       421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~~  468 (489)
T KOG4692|consen  421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVID  468 (489)
T ss_pred             ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceeee
Confidence            57889999998888999999999999999998874 5579999877543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=94.12  E-value=0.46  Score=55.18  Aligned_cols=92  Identities=10%  Similarity=0.098  Sum_probs=65.7

Q ss_pred             CeEEEeCCcceeecc-CCCCcEEEEEEeCC--E--EEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEE
Q 002641          796 SADFWNHRELVHVDS-SENGKVLSIACFRD--K--IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML  870 (897)
Q Consensus       796 tIklWd~~~~l~~l~-gH~~~V~sV~fspd--~--L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L  870 (897)
                      ++.+.++..--..+. ...++|+++.|+|+  .  ++-|-.-.++.++|++..   ++..|.  .++=+++-|+|.|++|
T Consensus       252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---~v~df~--egpRN~~~fnp~g~ii  326 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---PVFDFP--EGPRNTAFFNPHGNII  326 (566)
T ss_pred             eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC---EeEeCC--CCCccceEECCCCCEE
Confidence            466666651111222 34799999999996  3  344556689999999875   455554  5566788899999999


Q ss_pred             EEEeCC---CcEEEEeCCCc-cceee
Q 002641          871 YSGSLD---KTARVRSNDSF-TYAIF  892 (897)
Q Consensus       871 ~SgS~D---~tIrlWdi~~~-~l~~l  892 (897)
                      +-+|.+   |.|-|||+.+. ++..+
T Consensus       327 ~lAGFGNL~G~mEvwDv~n~K~i~~~  352 (566)
T KOG2315|consen  327 LLAGFGNLPGDMEVWDVPNRKLIAKF  352 (566)
T ss_pred             EEeecCCCCCceEEEeccchhhcccc
Confidence            999865   79999999886 55443

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=94.06  E-value=0.011  Score=69.81  Aligned_cols=51  Identities=18%  Similarity=0.442  Sum_probs=41.6

Q ss_pred             CCcccccccccCCCCcee---cCCCcccchHHHHHHHhcCCCCCCCCCcccCCCC
Q 002641          161 PKDFVCPITTHIFDDPVT---LETGQTYERRAIQEWIERGNSSCPITRQKLSSTK  212 (897)
Q Consensus       161 ~~el~CpIC~~l~~dPV~---l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~  212 (897)
                      ...-.||+|+.-+.|-.+   ..|+|-||..||..|-+- ..+||+||..|....
T Consensus       121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~v~  174 (1134)
T KOG0825|consen  121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGEVK  174 (1134)
T ss_pred             hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhheee
Confidence            456689999999988765   389999999999998773 458999999876443

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.02  E-value=0.29  Score=54.06  Aligned_cols=215  Identities=16%  Similarity=0.172  Sum_probs=136.8

Q ss_pred             HHHHHHHHhCCChhhHHHHhhHHHHHHH--HHh-hcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHH
Q 002641          372 EAVVLIDLLRPSTRTLIEMDMMESLMTV--IKK-KEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFE  448 (897)
Q Consensus       372 ea~~LL~~L~~~~~~i~~~~~~~~Ll~~--l~~-~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~  448 (897)
                      -|.--|..|...+.+...++-.++|--+  |.+ ++.+ +++.         ..+.++.-   .+.-+|+..+|..|++|
T Consensus       145 naVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdir-vqrn---------atgaLlnm---Ths~EnRr~LV~aG~lp  211 (550)
T KOG4224|consen  145 NAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIR-VQRN---------ATGALLNM---THSRENRRVLVHAGGLP  211 (550)
T ss_pred             eehhhhhhhhccccchhhhhhccchhhhHhhcccchhh-HHHH---------HHHHHHHh---hhhhhhhhhhhccCCch
Confidence            3455778888888888888777773222  333 3333 2211         22222210   11227999999999999


Q ss_pred             HHHHhhhcchHHHHHHHHHHHhhhccccCcchhhHhhhc--chhhHHHHHhhcCcchhHHHHHHHHHHHhhchhhhhHHH
Q 002641          449 SVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKA--ELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQI  526 (897)
Q Consensus       449 ~l~~~~~~~~~~~~~~~~~il~~c~~~~~~cr~~~~~~~--~~~~~~~ll~~~~~~~~~~~~~~l~el~~~~r~~~~~~~  526 (897)
                      .|++.+++||...|--+..- +.+|+.|..-|.-++|..  -+..+++|+...++++++-|-..|--|..      -++.
T Consensus       212 vLVsll~s~d~dvqyyctta-isnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas------dt~Y  284 (550)
T KOG4224|consen  212 VLVSLLKSGDLDVQYYCTTA-ISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS------DTEY  284 (550)
T ss_pred             hhhhhhccCChhHHHHHHHH-hhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc------cchh
Confidence            99999999999999886543 468999999999999998  67899999999999999887555544322      2345


Q ss_pred             HHHhhccCccchhhHHHHHHHhcCcCCcchH-HHHHHhhhhhcCccccc-ccHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 002641          527 LHIIKDEGTYSSMHTLLVYLQTANHDQCPVV-AGLLLQLDLLAEPRKMS-IYREEAIDTLISCLRNSDYPAAQLAAAKTI  604 (897)
Q Consensus       527 l~~i~~~g~~~~m~~l~~~l~~~~~~~~~~~-a~lllqld~l~~~~~~s-~~reea~~~~~~~l~~~~~~~~q~~~~~~l  604 (897)
                      -.+|.+.|++..    ++.|-+.|.  -|++ |...--..+=+-|..-+ |--.-.+.-|+.-|++.+....|-.+-.+|
T Consensus       285 q~eiv~ag~lP~----lv~Llqs~~--~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstL  358 (550)
T KOG4224|consen  285 QREIVEAGSLPL----LVELLQSPM--GPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTL  358 (550)
T ss_pred             hhHHHhcCCchH----HHHHHhCcc--hhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHH
Confidence            567777776543    222223332  1222 22211112222222211 111112444788889999988999999999


Q ss_pred             Hhcccccc
Q 002641          605 VSLQGRFT  612 (897)
Q Consensus       605 ~~l~g~~s  612 (897)
                      -+|.|.+-
T Consensus       359 rnLAasse  366 (550)
T KOG4224|consen  359 RNLAASSE  366 (550)
T ss_pred             HHHhhhhh
Confidence            99998553

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=93.80  E-value=0.015  Score=49.88  Aligned_cols=47  Identities=21%  Similarity=0.458  Sum_probs=23.5

Q ss_pred             cccccccccCCC-C---ceec----CCCcccchHHHHHHHhc--C--------CCCCCCCCcccC
Q 002641          163 DFVCPITTHIFD-D---PVTL----ETGQTYERRAIQEWIER--G--------NSSCPITRQKLS  209 (897)
Q Consensus       163 el~CpIC~~l~~-d---PV~l----~CGHtFCr~CI~~~~~~--~--------~~~CP~Cr~~~~  209 (897)
                      +..|+||...+. +   |+..    .|++.|=..|+.+|+..  +        ...||.|++++.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            567999999865 2   4443    69999999999999973  1        125999998875

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.78  E-value=0.033  Score=63.00  Aligned_cols=51  Identities=18%  Similarity=0.401  Sum_probs=39.0

Q ss_pred             CCCcccccccccCCC-----------------CceecCCCcccchHHHHHHHhcCCCCCCCCCcccCC
Q 002641          160 PPKDFVCPITTHIFD-----------------DPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS  210 (897)
Q Consensus       160 l~~el~CpIC~~l~~-----------------dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~  210 (897)
                      ....--|+||+.-..                 +=+.+||-|.|-+.|+.+|.+.-.-.||+||.++..
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            455667999987542                 123459999999999999998544579999998753

>PRK04043 tolB translocation protein TolB; Provisional

Probab=93.71  E-value=1.1  Score=52.05  Aligned_cols=112  Identities=10%  Similarity=-0.002  Sum_probs=70.1

Q ss_pred             ceeEeeecccccE-EEEecCC---CCeEEEeCC-cceeeccCCCCcEEEEEEeCC---EEEEEecC--CeEEEEeCCCCc
Q 002641          775 LRKYSPLAFEMVK-VLSNGHD---SSADFWNHR-ELVHVDSSENGKVLSIACFRD---KIFSGHSD--GTIKVWTGRGSI  844 (897)
Q Consensus       775 ~~~~~~~s~d~~~-LaSgs~D---gtIklWd~~-~~l~~l~gH~~~V~sV~fspd---~L~Sgs~D--gtIrlWd~~~~~  844 (897)
                      ....-.+++||+. ++..+.+   ..|.++|+. .....+....+.+....|+||   ++++.+.+  ..|.++|+.++.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            4556778899985 5544444   456777775 333344445566677889998   44555444  457777877764


Q ss_pred             ceeEEEeeccCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCccc
Q 002641          845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DK--TARVRSNDSFTY  889 (897)
Q Consensus       845 ~~~i~~l~gH~~~V~slafspdg~~L~SgS~-D~--tIrlWdi~~~~l  889 (897)
                         ...+..+........|+|||+.|+-.+. .+  .|.+.|+.+|..
T Consensus       269 ---~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~  313 (419)
T PRK04043        269 ---LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV  313 (419)
T ss_pred             ---EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence               3334434333445679999987776663 33  677778887743

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.70  E-value=0.2  Score=61.99  Aligned_cols=97  Identities=19%  Similarity=0.292  Sum_probs=70.4

Q ss_pred             cccEEEEecCCCCeEEEeCCccee-eccC--CCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCe
Q 002641          784 EMVKVLSNGHDSSADFWNHRELVH-VDSS--ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAV  858 (897)
Q Consensus       784 d~~~LaSgs~DgtIklWd~~~~l~-~l~g--H~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V  858 (897)
                      -+.+++.|+..|.+-..|+..-+. -.++  -.++|++++|+.|  .++.|..+|.|.+||...+  +.++.+..|+.++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--k~l~~i~e~~ap~  175 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--KILKVITEHGAPV  175 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC--cceeeeeecCCcc
Confidence            356788888888888777763222 1222  3689999999987  8899999999999999987  4677777777766


Q ss_pred             EEEE---EccCCCEEEEEeCCCcEEEEeC
Q 002641          859 TGLA---ILQSGEMLYSGSLDKTARVRSN  884 (897)
Q Consensus       859 ~sla---fspdg~~L~SgS~D~tIrlWdi  884 (897)
                      +++-   +..++..++++...|.  +|..
T Consensus       176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            6544   3345566888877775  6754

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=93.66  E-value=0.043  Score=58.67  Aligned_cols=49  Identities=18%  Similarity=0.358  Sum_probs=38.3

Q ss_pred             ccccccc-CCCCcee----cCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCC
Q 002641          165 VCPITTH-IFDDPVT----LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL  213 (897)
Q Consensus       165 ~CpIC~~-l~~dPV~----l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~  213 (897)
                      .||+|.. .+..|-+    -+|||+.|.+|....+..|...||.|...+....+
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf   55 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF   55 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence            4888863 4445532    28999999999999999888899999988765443

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=93.66  E-value=0.025  Score=68.88  Aligned_cols=49  Identities=24%  Similarity=0.499  Sum_probs=40.8

Q ss_pred             ccccccccCCCCceecCCCcccchHHHHHHHhcC-CCCCCCCCcccCCCCC
Q 002641          164 FVCPITTHIFDDPVTLETGQTYERRAIQEWIERG-NSSCPITRQKLSSTKL  213 (897)
Q Consensus       164 l~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~-~~~CP~Cr~~~~~~~~  213 (897)
                      +.|+||.+ ..+++++.|||.||+.|+...+... ...||.|+..+....+
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l  504 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL  504 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence            89999999 8889999999999999999988743 3369999877654443

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=93.66  E-value=0.25  Score=60.12  Aligned_cols=100  Identities=11%  Similarity=0.186  Sum_probs=76.6

Q ss_pred             cccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEE
Q 002641          784 EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGL  861 (897)
Q Consensus       784 d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~sl  861 (897)
                      ++..++.|+.-..+...|+.  +..+...-..+.|.=+..+...+++|..-|+|-+-|.++.  +.+++|..|++.|+.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~--~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSF--ETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcC--ceeeeeeccccceeee
Confidence            35567777777777778877  3333333334457777777779999999999999999987  6899999999999865


Q ss_pred             EEccCCCEEEEEeCC---------CcEEEEeCCCc
Q 002641          862 AILQSGEMLYSGSLD---------KTARVRSNDSF  887 (897)
Q Consensus       862 afspdg~~L~SgS~D---------~tIrlWdi~~~  887 (897)
                      ..  .|+.|+|+|..         .-|+|||++.-
T Consensus       224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm  256 (1118)
T KOG1275|consen  224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM  256 (1118)
T ss_pred             ec--cCCeEEEeecccccccccccchhhhhhhhhh
Confidence            54  59999999854         45789999864

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=93.62  E-value=1  Score=49.89  Aligned_cols=111  Identities=14%  Similarity=0.080  Sum_probs=79.5

Q ss_pred             eEeeecccccEEEEecCC-CCeEEEeCC-----cceeeccCCCCc----------EEEEEEeCC--EEEEEecC-CeEEE
Q 002641          777 KYSPLAFEMVKVLSNGHD-SSADFWNHR-----ELVHVDSSENGK----------VLSIACFRD--KIFSGHSD-GTIKV  837 (897)
Q Consensus       777 ~~~~~s~d~~~LaSgs~D-gtIklWd~~-----~~l~~l~gH~~~----------V~sV~fspd--~L~Sgs~D-gtIrl  837 (897)
                      +.+.++.+|.+++++++. |.|.++-+.     ........|.+.          +.+..|.|+  +++++... -.|.+
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~  171 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL  171 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence            778888999999988876 788888875     122122335554          889999997  66666543 36789


Q ss_pred             EeCCCCcceeEEEee-ccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCc
Q 002641          838 WTGRGSILHLIQQIR-EHTKAVTGLAILQSGEMLYSGS-LDKTARVRSNDSF  887 (897)
Q Consensus       838 Wd~~~~~~~~i~~l~-gH~~~V~slafspdg~~L~SgS-~D~tIrlWdi~~~  887 (897)
                      |++..+.+....... .-...-.-+.|+|+|++.+..+ .+++|-+|...+.
T Consensus       172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~  223 (346)
T COG2706         172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA  223 (346)
T ss_pred             EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence            999877533332222 2333567899999999988887 6999999999873

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=93.60  E-value=0.056  Score=42.57  Aligned_cols=43  Identities=23%  Similarity=0.435  Sum_probs=21.9

Q ss_pred             ccccccCCCC--ceec--CCCcccchHHHHHHHhcCCCCCCCCCccc
Q 002641          166 CPITTHIFDD--PVTL--ETGQTYERRAIQEWIERGNSSCPITRQKL  208 (897)
Q Consensus       166 CpIC~~l~~d--PV~l--~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~  208 (897)
                      ||+|.+-+..  --..  +||+-.|+.|..+..+..+..||-||++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            7888887721  1112  79999999999988876677999999874

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.52  E-value=0.044  Score=60.42  Aligned_cols=47  Identities=21%  Similarity=0.265  Sum_probs=38.4

Q ss_pred             cccccccccCCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCcccCC
Q 002641          163 DFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLSS  210 (897)
Q Consensus       163 el~CpIC~~l~~dPV~l~CGHt-FCr~CI~~~~~~~~~~CP~Cr~~~~~  210 (897)
                      --.|-||+.--+|-+++||.|. .|..|-.... -....||+||+++..
T Consensus       290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIEE  337 (349)
T ss_pred             CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchHh
Confidence            4579999999999999999994 6999987643 334579999998753

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.49  E-value=0.04  Score=60.72  Aligned_cols=47  Identities=17%  Similarity=0.259  Sum_probs=38.1

Q ss_pred             CCCCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccC
Q 002641          159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLS  209 (897)
Q Consensus       159 ~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~  209 (897)
                      +.+....|-||.+-..+.+-++|||..|  |+.-..  ....||+||+.+.
T Consensus       301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQCPVCRQRIR  347 (355)
T ss_pred             ccCCCCceEEecCCccceeeecCCcEEE--chHHHh--hCCCCchhHHHHH
Confidence            5677788999999999999999999988  765432  3556999998764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=93.43  E-value=0.16  Score=60.08  Aligned_cols=76  Identities=18%  Similarity=0.122  Sum_probs=64.2

Q ss_pred             CCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc-------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCC
Q 002641          812 ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLD  876 (897)
Q Consensus       812 H~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~-------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D  876 (897)
                      .+....|+.|+.+  +++.||.||.+||-.+.+..             +..-+++.||+..|.-+.|+.+...|-|...+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            3566789999985  99999999999999887542             22236789999999999999999999999999


Q ss_pred             CcEEEEeCCCc
Q 002641          877 KTARVRSNDSF  887 (897)
Q Consensus       877 ~tIrlWdi~~~  887 (897)
                      |-|.+|-+-.|
T Consensus        93 GlIiVWmlykg  103 (1189)
T KOG2041|consen   93 GLIIVWMLYKG  103 (1189)
T ss_pred             ceEEEEeeecc
Confidence            99999987655

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.43  E-value=0.17  Score=60.88  Aligned_cols=90  Identities=13%  Similarity=0.122  Sum_probs=67.9

Q ss_pred             CCCeEEEe-CCcceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEE
Q 002641          794 DSSADFWN-HRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML  870 (897)
Q Consensus       794 DgtIklWd-~~~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L  870 (897)
                      .|+|.|+- .+++-+. ....-.+++++|+|.  .|++|=.-|.+.+|...+.+  .-.....|..+|.-+.|||+|..+
T Consensus        40 ~GSVtIfadtGEPqr~-Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e--~htv~~th~a~i~~l~wS~~G~~l  116 (1416)
T KOG3617|consen   40 GGSVTIFADTGEPQRD-VTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE--THTVVETHPAPIQGLDWSHDGTVL  116 (1416)
T ss_pred             CceEEEEecCCCCCcc-cccceehhhhccChHHHHHhhccccceeEEEecCCce--eeeeccCCCCCceeEEecCCCCeE
Confidence            46777763 3331111 111223567999997  88888888999999998763  444566799999999999999999


Q ss_pred             EEEeCCCcEEEEeCCC
Q 002641          871 YSGSLDKTARVRSNDS  886 (897)
Q Consensus       871 ~SgS~D~tIrlWdi~~  886 (897)
                      +|+..=|.+.+|....
T Consensus       117 ~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen  117 MTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             EEcCCCceeEEEEeee
Confidence            9999999999998763

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=93.24  E-value=0.052  Score=43.74  Aligned_cols=49  Identities=10%  Similarity=0.152  Sum_probs=38.1

Q ss_pred             CCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCC
Q 002641          161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK  212 (897)
Q Consensus       161 ~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~  212 (897)
                      ..+..|-.|...-...++++|||..|+.|..-+   ....||.|++++....
T Consensus         5 ~~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    5 QPEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDD   53 (55)
T ss_pred             ccceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCC
Confidence            345667788888888999999999999996432   2346999999987654

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=92.94  E-value=0.19  Score=58.82  Aligned_cols=73  Identities=23%  Similarity=0.396  Sum_probs=65.5

Q ss_pred             CCCCcccccccccCCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHHHHhCCC
Q 002641          159 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPG  233 (897)
Q Consensus       159 ~l~~el~CpIC~~l~~dPV~l-~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~~~~~~~  233 (897)
                      ++|++|.-|....+|+|||.+ ..|-+..|+-|..++-. ..+.|.-|.+++.+.+ .||-.|++-|..|....+.
T Consensus       850 DvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddV-tpn~eLrekIn~f~k~k~~  923 (929)
T COG5113         850 DVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDV-TPNAELREKINRFYKCKGQ  923 (929)
T ss_pred             CCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhc-CCCHHHHHHHHHHHhcccc
Confidence            799999999999999999998 68899999999998875 4489999999999999 6999999999999876543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=92.93  E-value=2.5  Score=47.83  Aligned_cols=111  Identities=17%  Similarity=0.105  Sum_probs=72.6

Q ss_pred             ceeEeeecccccEEEEecC-CCCeEEEeCC--c--c--eeecc-CCCCcEEEEEEeCC---EEEEEecCCeEEEEeCC--
Q 002641          775 LRKYSPLAFEMVKVLSNGH-DSSADFWNHR--E--L--VHVDS-SENGKVLSIACFRD---KIFSGHSDGTIKVWTGR--  841 (897)
Q Consensus       775 ~~~~~~~s~d~~~LaSgs~-DgtIklWd~~--~--~--l~~l~-gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~--  841 (897)
                      ......+.|++++++.... ...|.+|+++  .  +  ...+. .....-..+.|+||   ..+.+-.+++|.++++.  
T Consensus       145 h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~  224 (345)
T PF10282_consen  145 HPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS  224 (345)
T ss_dssp             CEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred             cceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc
Confidence            3445677889888776543 3578888876  2  2  12222 23456789999998   55666778999999998  


Q ss_pred             CCcceeEEEeecc------CCCeEEEEEccCCCEEEEEe-CCCcEEEEeCC
Q 002641          842 GSILHLIQQIREH------TKAVTGLAILQSGEMLYSGS-LDKTARVRSND  885 (897)
Q Consensus       842 ~~~~~~i~~l~gH------~~~V~slafspdg~~L~SgS-~D~tIrlWdi~  885 (897)
                      ++.+..++.....      ......++++|||++|+.+. .+.+|-+|++.
T Consensus       225 ~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  225 DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            4433344443321      12578999999999888776 56789999993

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=92.83  E-value=0.81  Score=54.99  Aligned_cols=97  Identities=8%  Similarity=0.052  Sum_probs=71.4

Q ss_pred             cEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC------CEEEEEecCCeEEEEeCCCCcceeEEEeeccCCC
Q 002641          786 VKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR------DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA  857 (897)
Q Consensus       786 ~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp------d~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~  857 (897)
                      -.||++...|.|.+||+.  ..+.-+..|..+|..++|-+      |.|+.-+...++-+|+..+|.  .+.....-...
T Consensus        80 lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~--k~Wk~~ys~~i  157 (1062)
T KOG1912|consen   80 LLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE--KFWKYDYSHEI  157 (1062)
T ss_pred             eeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc--eeeccccCCcc
Confidence            368889899999999987  55556777899999999975      377777788899999999984  45555544556


Q ss_pred             eEEEEEccC-CCEEEEEeCCCcEEEEeC
Q 002641          858 VTGLAILQS-GEMLYSGSLDKTARVRSN  884 (897)
Q Consensus       858 V~slafspd-g~~L~SgS~D~tIrlWdi  884 (897)
                      ..|+.+.|- .+++..-+..|.+-+.+.
T Consensus       158 Ls~f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  158 LSCFRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             eeeeeeCCCCcceEEEEccCceEEEEec
Confidence            678888883 455555555566655554

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=92.82  E-value=0.12  Score=41.24  Aligned_cols=41  Identities=22%  Similarity=0.557  Sum_probs=32.4

Q ss_pred             ccccccc--CCCCceecCCC-----cccchHHHHHHHhcC-CCCCCCCC
Q 002641          165 VCPITTH--IFDDPVTLETG-----QTYERRAIQEWIERG-NSSCPITR  205 (897)
Q Consensus       165 ~CpIC~~--l~~dPV~l~CG-----HtFCr~CI~~~~~~~-~~~CP~Cr  205 (897)
                      .|.||++  --.+|.+.||.     |.+=+.|+.+|+... ...||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4889987  44577778885     778899999999854 55799995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=92.72  E-value=0.52  Score=53.39  Aligned_cols=107  Identities=12%  Similarity=0.037  Sum_probs=80.0

Q ss_pred             EEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeC--CEEEEEecCCeEEEEeCCCC-c---cee---------E
Q 002641          788 VLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGS-I---LHL---------I  848 (897)
Q Consensus       788 LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fsp--d~L~Sgs~DgtIrlWd~~~~-~---~~~---------i  848 (897)
                      -++.-.++.|.++|-.    +....-.-|..+|.++.+++  |...|....|.|.-|..... +   ...         +
T Consensus       115 AVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL  194 (558)
T KOG0882|consen  115 AVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL  194 (558)
T ss_pred             EeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchh
Confidence            3445567999999964    55555566999999999998  58888888899999998841 0   001         1


Q ss_pred             EEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeec
Q 002641          849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ  894 (897)
Q Consensus       849 ~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~  894 (897)
                      ..+.-.+...+++.|+|+|..+.+-+.|.+||+++.++| ..+.+.+
T Consensus       195 y~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE  241 (558)
T KOG0882|consen  195 YGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE  241 (558)
T ss_pred             hcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence            112223446789999999999999999999999999999 5565544

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=92.65  E-value=0.1  Score=44.96  Aligned_cols=44  Identities=23%  Similarity=0.578  Sum_probs=32.5

Q ss_pred             cccccccCCC----Cceec-CCCcccchHHHHHHHhcCCCCCCCCCcccC
Q 002641          165 VCPITTHIFD----DPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLS  209 (897)
Q Consensus       165 ~CpIC~~l~~----dPV~l-~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~  209 (897)
                      .||-|..-|.    =||.. -|.|.|-..||.+|+.. ...||.++++..
T Consensus        33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~   81 (88)
T COG5194          33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV   81 (88)
T ss_pred             cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence            4555555332    14444 79999999999999996 458999999864

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.51  E-value=0.082  Score=59.06  Aligned_cols=47  Identities=21%  Similarity=0.492  Sum_probs=38.4

Q ss_pred             CCcccccccccCCC---CceecCCCcccchHHHHHHHhcCC--CCCCCCCcc
Q 002641          161 PKDFVCPITTHIFD---DPVTLETGQTYERRAIQEWIERGN--SSCPITRQK  207 (897)
Q Consensus       161 ~~el~CpIC~~l~~---dPV~l~CGHtFCr~CI~~~~~~~~--~~CP~Cr~~  207 (897)
                      ..-|.|||-.+--.   -|+.+.|||.-|+..+.+..+.|.  +.||.|-..
T Consensus       332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e  383 (394)
T KOG2817|consen  332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE  383 (394)
T ss_pred             cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence            44579999777665   489999999999999999888776  789999544

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=92.49  E-value=0.092  Score=63.30  Aligned_cols=123  Identities=10%  Similarity=0.051  Sum_probs=89.7

Q ss_pred             eeeecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecC-CeEEE
Q 002641          764 HMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSD-GTIKV  837 (897)
Q Consensus       764 ~i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~D-gtIrl  837 (897)
                      +-|.+...+....++..|+.+...|+.|+..|.|+++++.  .......+|+++|+-|.=+.|   +|.+.+.. .-.-+
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence            3466666677888899999999999999999999999987  667777899999999977765   44444444 36789


Q ss_pred             EeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-ccee
Q 002641          838 WTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAI  891 (897)
Q Consensus       838 Wd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~  891 (897)
                      |+.... +...+.|.+-    .++.|+-....-+.|.......+||+.|+ .+++
T Consensus      1172 W~~~s~-~~~~Hsf~ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1172 WDASST-GGPRHSFDED----KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred             hccccc-cCcccccccc----ceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence            999863 2456666543    57788755433333443456789999998 5555

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.44  E-value=0.087  Score=54.84  Aligned_cols=37  Identities=30%  Similarity=0.412  Sum_probs=33.3

Q ss_pred             CCCCcccccccccCCCCceecCCCcccchHHHHHHHh
Q 002641          159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIE  195 (897)
Q Consensus       159 ~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~  195 (897)
                      .+.+.-.|.+|++-++|||+++-||.|||.||.+++-
T Consensus        39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il   75 (303)
T KOG3039|consen   39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL   75 (303)
T ss_pred             ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence            5666677899999999999999999999999999874

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=92.36  E-value=1.1  Score=51.03  Aligned_cols=101  Identities=14%  Similarity=0.106  Sum_probs=66.5

Q ss_pred             ccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCcceeEEEeeccCC-CeEEE
Q 002641          785 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTK-AVTGL  861 (897)
Q Consensus       785 ~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~-~V~sl  861 (897)
                      +..+..++.++.+..||..  +.+.....  ..........+.++.++.||.+..+|..+++  .+........ .+.+.
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~--~~W~~~~~~~~~~ssp  316 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPAVDDNRLYVTDADGVVVALDRRSGS--ELWKNDELKYRQLTAP  316 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeecc--CCccCceEeCCEEEEECCCCeEEEEECCCCc--EEEccccccCCccccC
Confidence            4567778889999999986  33333221  1122333455688888999999999999884  4443322111 22222


Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCCCc-ccee
Q 002641          862 AILQSGEMLYSGSLDKTARVRSNDSF-TYAI  891 (897)
Q Consensus       862 afspdg~~L~SgS~D~tIrlWdi~~~-~l~~  891 (897)
                      ..  .|..++.++.||.+.+||..+| .+..
T Consensus       317 ~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~  345 (377)
T TIGR03300       317 AV--VGGYLVVGDFEGYLHWLSREDGSFVAR  345 (377)
T ss_pred             EE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            22  3778999999999999999988 4433

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.19  E-value=0.23  Score=55.43  Aligned_cols=113  Identities=13%  Similarity=0.076  Sum_probs=77.2

Q ss_pred             ccccccceeEeeeccccc-EEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCC
Q 002641          769 MKGLRELRKYSPLAFEMV-KVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       769 l~~~~~~~~~~~~s~d~~-~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~  842 (897)
                      +-++.....-..+++... .+..++.+.+|+|.|+.  .++..+..| ..+|+.+|..|   .++.|-..|.|.+||++.
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            334445555666777555 78899999999999997  566666677 88999999975   899999999999999996


Q ss_pred             CcceeEEEeec--cCCCeEEEE------EccCCCEEEEEeCCCcEEEEeCC
Q 002641          843 SILHLIQQIRE--HTKAVTGLA------ILQSGEMLYSGSLDKTARVRSND  885 (897)
Q Consensus       843 ~~~~~i~~l~g--H~~~V~sla------fspdg~~L~SgS~D~tIrlWdi~  885 (897)
                      .+ ..+..+.+  ...+|..++      .++.|..++..+.+  ...|++.
T Consensus       268 ~~-~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~  315 (463)
T KOG1645|consen  268 PE-GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIV  315 (463)
T ss_pred             CC-chHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhh
Confidence            64 22333333  223444433      23445666665554  3466654

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=92.03  E-value=9.5  Score=45.60  Aligned_cols=188  Identities=11%  Similarity=0.207  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHhcc---CChHHHHHHHHHHHHhhhccHHHHHHhhhccchHHHHHHHHhcC----chHHHHHHHHhCCCh
Q 002641          312 PAVINGFVEILFNS---VDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPST  384 (897)
Q Consensus       312 ~~a~~~~ke~L~~s---l~~~vlk~a~~~l~el~s~~e~~~~~i~~~~~~~~~i~~llk~~----~~ea~~LL~~L~~~~  384 (897)
                      ..+...++..|...   -++.|.+.+...+..+....+...+.+. ...-...++..+...    ...|..+|..|...+
T Consensus        72 ~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~-~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~  150 (503)
T PF10508_consen   72 DSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV-DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP  150 (503)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc-CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc
Confidence            34456666666663   3556677766666666555554444444 334466677777665    566666888888777


Q ss_pred             hhHHHH---hhHHHHHHHHHhhcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchHHH
Q 002641          385 RTLIEM---DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEE  461 (897)
Q Consensus       385 ~~i~~~---~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~  461 (897)
                      ..+..+   +.+..|..++.+.++- ..      --.+.++-.+...+     ...+..++..|.++.+++.++++|+=-
T Consensus       151 ~~~~~l~~~~~~~~L~~l~~~~~~~-vR------~Rv~el~v~i~~~S-----~~~~~~~~~sgll~~ll~eL~~dDiLv  218 (503)
T PF10508_consen  151 EGLEQLFDSNLLSKLKSLMSQSSDI-VR------CRVYELLVEIASHS-----PEAAEAVVNSGLLDLLLKELDSDDILV  218 (503)
T ss_pred             hhHHHHhCcchHHHHHHHHhccCHH-HH------HHHHHHHHHHHhcC-----HHHHHHHHhccHHHHHHHHhcCccHHH
Confidence            766543   3356677777663331 11      11333444443333     346677778899999999999999999


Q ss_pred             HHHHHHHHhhhccccCcchhhHhhhcchhhHHHHHhhcCcchhHHHHHHHHH
Q 002641          462 RIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSE  513 (897)
Q Consensus       462 ~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~e  513 (897)
                      +.+++++|.- +.....+..||.+..-+..+..++.......|...+.+...
T Consensus       219 qlnalell~~-La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~  269 (503)
T PF10508_consen  219 QLNALELLSE-LAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGR  269 (503)
T ss_pred             HHHHHHHHHH-HHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhH
Confidence            9999988863 33388889999999999999999887544445555444433

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=91.84  E-value=1  Score=51.27  Aligned_cols=96  Identities=8%  Similarity=0.133  Sum_probs=64.5

Q ss_pred             cccEEEEecCCCCeEEEeCC--cceeeccCC-CCcEEEEEEeCCEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEE
Q 002641          784 EMVKVLSNGHDSSADFWNHR--ELVHVDSSE-NGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG  860 (897)
Q Consensus       784 d~~~LaSgs~DgtIklWd~~--~~l~~l~gH-~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~s  860 (897)
                      ++..+..++.||.+..+|..  +.+.....- ...+.+.....+.++.++.||.+.+||..++  +.+..+..+...+.+
T Consensus       278 ~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG--~~~~~~~~~~~~~~~  355 (377)
T TIGR03300       278 DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDG--SFVARLKTDGSGIAS  355 (377)
T ss_pred             eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCC--CEEEEEEcCCCcccc
Confidence            46677778889999999986  333333211 1223333445568999999999999999988  466777766654433


Q ss_pred             EEEccCCCEEEEEeCCCcEEEE
Q 002641          861 LAILQSGEMLYSGSLDKTARVR  882 (897)
Q Consensus       861 lafspdg~~L~SgS~D~tIrlW  882 (897)
                      --... ++.|+.++.||.|..|
T Consensus       356 sp~~~-~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       356 PPVVV-GDGLLVQTRDGDLYAF  376 (377)
T ss_pred             CCEEE-CCEEEEEeCCceEEEe
Confidence            22223 3468899999988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=91.81  E-value=2.3  Score=48.16  Aligned_cols=89  Identities=7%  Similarity=-0.058  Sum_probs=63.4

Q ss_pred             CCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEE-EEe---------cCCeEEEEeCCCCcceeEEEeec----c--
Q 002641          795 SSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIF-SGH---------SDGTIKVWTGRGSILHLIQQIRE----H--  854 (897)
Q Consensus       795 gtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~-Sgs---------~DgtIrlWd~~~~~~~~i~~l~g----H--  854 (897)
                      ++|.+.|..  +.+.++..-..+-. + ++||  .++ +.+         .+..|.+||..+.+  .+..+.-    +  
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p~~~  102 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADIELPEGPRFL  102 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc--EEeEEccCCCchhh
Confidence            889999986  66666654433322 4 8887  444 444         58999999999984  5555542    1  


Q ss_pred             -CCCeEEEEEccCCCEEEEEe-C-CCcEEEEeCCCc
Q 002641          855 -TKAVTGLAILQSGEMLYSGS-L-DKTARVRSNDSF  887 (897)
Q Consensus       855 -~~~V~slafspdg~~L~SgS-~-D~tIrlWdi~~~  887 (897)
                       ......++++|||++++... . +..+-+.|+.++
T Consensus       103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~  138 (352)
T TIGR02658       103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK  138 (352)
T ss_pred             ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence             22345789999999888665 3 789999999988

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=91.66  E-value=3  Score=47.30  Aligned_cols=105  Identities=13%  Similarity=0.097  Sum_probs=71.0

Q ss_pred             cccEEEEecCCCCeEEEeCC-------cceeeccC-------CCCcEEEEEEeCC--EEEEEe----------cCCeEEE
Q 002641          784 EMVKVLSNGHDSSADFWNHR-------ELVHVDSS-------ENGKVLSIACFRD--KIFSGH----------SDGTIKV  837 (897)
Q Consensus       784 d~~~LaSgs~DgtIklWd~~-------~~l~~l~g-------H~~~V~sV~fspd--~L~Sgs----------~DgtIrl  837 (897)
                      +|+++..... |+|.+-|+.       .....+..       ..+...-++++|+  +++...          ..+.|-+
T Consensus       205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V  283 (352)
T TIGR02658       205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV  283 (352)
T ss_pred             CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence            6776665555 999999953       22222221       2334445899986  444421          1257999


Q ss_pred             EeCCCCcceeEEEeeccCCCeEEEEEccCCC-EEEEEe-CCCcEEEEeCCCc-cceee
Q 002641          838 WTGRGSILHLIQQIREHTKAVTGLAILQSGE-MLYSGS-LDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       838 Wd~~~~~~~~i~~l~gH~~~V~slafspdg~-~L~SgS-~D~tIrlWdi~~~-~l~~l  892 (897)
                      +|..++  +.+..+.. ...++.++|+|||+ +|+... .+++|.+.|+.++ .+.++
T Consensus       284 iD~~t~--kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       284 VDAKTG--KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EECCCC--eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            999988  35555542 34789999999999 888776 6889999999998 55554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.16  E-value=0.037  Score=58.86  Aligned_cols=41  Identities=29%  Similarity=0.423  Sum_probs=34.2

Q ss_pred             cccccccccCCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCccc
Q 002641          163 DFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKL  208 (897)
Q Consensus       163 el~CpIC~~l~~dPV~l~CGHt-FCr~CI~~~~~~~~~~CP~Cr~~~  208 (897)
                      +..|.||++.-.|=|.++|||. -|..|-.+.     ..||+||+.+
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm-----~eCPICRqyi  341 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM-----NECPICRQYI  341 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhcccc-----ccCchHHHHH
Confidence            7899999999999999999994 588885432     2799999875

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=90.99  E-value=0.24  Score=55.94  Aligned_cols=105  Identities=15%  Similarity=0.114  Sum_probs=71.0

Q ss_pred             ecccccEEEEecC-CCCeEEEeCC--cceeeccCC--CCcEEEEEEeCC----EEEEE-ecCCeEEEEeCCCCcceeEEE
Q 002641          781 LAFEMVKVLSNGH-DSSADFWNHR--ELVHVDSSE--NGKVLSIACFRD----KIFSG-HSDGTIKVWTGRGSILHLIQQ  850 (897)
Q Consensus       781 ~s~d~~~LaSgs~-DgtIklWd~~--~~l~~l~gH--~~~V~sV~fspd----~L~Sg-s~DgtIrlWd~~~~~~~~i~~  850 (897)
                      .+.++..+.|++. |+.+|++|+.  ..+..++--  .+.+..+ .++.    .++.+ -.+|.|.++|-.....+....
T Consensus        61 ~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f  139 (558)
T KOG0882|consen   61 VSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF  139 (558)
T ss_pred             ccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCcccee
Confidence            3457777888777 8888888876  554433322  2222222 2332    34333 345888888887653233333


Q ss_pred             eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641          851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDS  886 (897)
Q Consensus       851 l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~  886 (897)
                      -+-|..+|.++.++|.+..++|....|.|.-|....
T Consensus       140 kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~  175 (558)
T KOG0882|consen  140 KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG  175 (558)
T ss_pred             cccccCceEEEEeeccccceeeccccceeEeecCCC
Confidence            344999999999999999999999999999999874

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.91  E-value=0.1  Score=60.88  Aligned_cols=62  Identities=29%  Similarity=0.483  Sum_probs=41.6

Q ss_pred             CCCCcccccccccCC----CCceecCCCcccchHHHHHHHhcCCCCCCCCCcc-----cCCCCCCcccHHHHHHHH
Q 002641          159 TPPKDFVCPITTHIF----DDPVTLETGQTYERRAIQEWIERGNSSCPITRQK-----LSSTKLPKTNYVLKRLIA  225 (897)
Q Consensus       159 ~l~~el~CpIC~~l~----~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~-----~~~~~~~~pN~~L~~li~  225 (897)
                      ...+-+.|+||+..|    ..||.+.|||+-|+.|++...+   ..|| |...     ...+..+ .|+++-+.+.
T Consensus         7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp-~~~De~~~~~~~~e~p-~n~alL~~~~   77 (861)
T KOG3161|consen    7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP-TKRDEDSSLMQLKEEP-RNYALLRREH   77 (861)
T ss_pred             hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC-CCccccchhcChhhcc-hhHHHHHhhc
Confidence            345568899997777    4799999999999999987544   3677 3321     1233342 5666655443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=90.82  E-value=2.2  Score=44.67  Aligned_cols=102  Identities=11%  Similarity=0.092  Sum_probs=67.0

Q ss_pred             cccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCcceeEEEe-eccC---CC
Q 002641          784 EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQI-REHT---KA  857 (897)
Q Consensus       784 d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i~~l-~gH~---~~  857 (897)
                      ++.+++.++.++.+..||..  +.+..+..............+.++.++.|+.+..+|..+++  .+... ....   ..
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~--~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGK--VLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSC--EEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcc--eeeeecccccccccc
Confidence            56677777899999999974  44444443211111134455678888899999999999984  45552 2221   11


Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          858 VTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       858 V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ........++..++.+..++.|..+|+++|
T Consensus       113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG  142 (238)
T PF13360_consen  113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTG  142 (238)
T ss_dssp             B--SEEEEETTEEEEEETCSEEEEEETTTT
T ss_pred             ccccCceEecCEEEEEeccCcEEEEecCCC
Confidence            222233334888999999999999999998

...

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.79  E-value=1.4  Score=53.76  Aligned_cols=106  Identities=14%  Similarity=0.104  Sum_probs=78.2

Q ss_pred             EeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCc-EEEEEEeCC--EEEEEecCC-----eEEEEeCCCC---c-
Q 002641          778 YSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGK-VLSIACFRD--KIFSGHSDG-----TIKVWTGRGS---I-  844 (897)
Q Consensus       778 ~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~-V~sV~fspd--~L~Sgs~Dg-----tIrlWd~~~~---~-  844 (897)
                      ..-+++.+..++-|+.||.|.+.+-. +.++-++.+... |..+-.-.+  .|+|.+.|+     .+++||+...   . 
T Consensus        28 isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   28 ISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             eeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            44456678899999999999988877 666889988776 555544333  888888775     4899999743   1 


Q ss_pred             ceeEE--Eeec-----cCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 002641          845 LHLIQ--QIRE-----HTKAVTGLAILQSGEMLYSGSLDKTARVRS  883 (897)
Q Consensus       845 ~~~i~--~l~g-----H~~~V~slafspdg~~L~SgS~D~tIrlWd  883 (897)
                      +.++.  ...+     ...++++++++.+-..+|.|-.||.|..+.
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~  153 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK  153 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence            34442  1222     244688999999989999999999998763

>PRK04043 tolB translocation protein TolB; Provisional

Probab=90.72  E-value=3.9  Score=47.68  Aligned_cols=112  Identities=10%  Similarity=0.027  Sum_probs=65.5

Q ss_pred             eeEeeecccccEEE-EecCCC--CeEEEeCC-cceeeccCCCCcEEEEEEeCC---EEEEEecCC--eEEEEeCCCCcce
Q 002641          776 RKYSPLAFEMVKVL-SNGHDS--SADFWNHR-ELVHVDSSENGKVLSIACFRD---KIFSGHSDG--TIKVWTGRGSILH  846 (897)
Q Consensus       776 ~~~~~~s~d~~~La-Sgs~Dg--tIklWd~~-~~l~~l~gH~~~V~sV~fspd---~L~Sgs~Dg--tIrlWd~~~~~~~  846 (897)
                      .....+++||+.++ +.+.++  .|.++|+. .....+..+.+......|+||   +.++....|  .|.++|+.++..+
T Consensus       235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~  314 (419)
T PRK04043        235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE  314 (419)
T ss_pred             EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence            34456788998665 344444  56666765 444555555544445689997   344433344  5777788776421


Q ss_pred             eEEEeeccCCCeEEEEEccCCCEEEEEeCC---------CcEEEEeCCCccceee
Q 002641          847 LIQQIREHTKAVTGLAILQSGEMLYSGSLD---------KTARVRSNDSFTYAIF  892 (897)
Q Consensus       847 ~i~~l~gH~~~V~slafspdg~~L~SgS~D---------~tIrlWdi~~~~l~~l  892 (897)
                      .+ ++.+.  .  ...|+|||+.|+-.+..         ..|.+.|+.++..+.+
T Consensus       315 rl-t~~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L  364 (419)
T PRK04043        315 QV-VFHGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL  364 (419)
T ss_pred             eC-ccCCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC
Confidence            11 12222  1  24899999988776643         2567778877744443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=90.71  E-value=2.2  Score=40.03  Aligned_cols=62  Identities=24%  Similarity=0.372  Sum_probs=44.5

Q ss_pred             EEEEEEeC------CEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 002641          816 VLSIACFR------DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRS  883 (897)
Q Consensus       816 V~sV~fsp------d~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWd  883 (897)
                      |+++++..      +.|+.||.|..||+|+-..    .+..+..+ ..|+++.-... ..|+-|..+|||-+|+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~   69 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----IVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYD   69 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----EEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEe
Confidence            66777653      2899999999999999654    46666644 55777776654 5677777777776544

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=90.52  E-value=0.1  Score=63.13  Aligned_cols=47  Identities=23%  Similarity=0.641  Sum_probs=36.7

Q ss_pred             cccccccccCCC--C---cee--cCCCcccchHHHHHHHhc-CCCCCCCCCcccC
Q 002641          163 DFVCPITTHIFD--D---PVT--LETGQTYERRAIQEWIER-GNSSCPITRQKLS  209 (897)
Q Consensus       163 el~CpIC~~l~~--d---PV~--l~CGHtFCr~CI~~~~~~-~~~~CP~Cr~~~~  209 (897)
                      .-.|+||..++.  |   |-.  ..|.|-|--.|+.+|++. ++.+||.||..++
T Consensus      1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            446999999886  2   332  268899999999999995 4668999997664

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=90.49  E-value=4.8  Score=46.16  Aligned_cols=104  Identities=12%  Similarity=0.089  Sum_probs=78.7

Q ss_pred             cccEEEEecCCCCeEEEeCCcceeeccCCCCcEEEEEEeCC--EEEEEecCC-eEEEEeCCCCcceeEEEeeccCCCeEE
Q 002641          784 EMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDG-TIKVWTGRGSILHLIQQIREHTKAVTG  860 (897)
Q Consensus       784 d~~~LaSgs~DgtIklWd~~~~l~~l~gH~~~V~sV~fspd--~L~Sgs~Dg-tIrlWd~~~~~~~~i~~l~gH~~~V~s  860 (897)
                      +|.+++..|.. .+-+.+...--..-.+|.+.|.-..+..+  -++-|-.|| .+-++|..+++   +..+.+.-+.|.+
T Consensus       331 ~Gd~ia~VSRG-kaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e---~kr~e~~lg~I~a  406 (668)
T COG4946         331 NGDYIALVSRG-KAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE---VKRIEKDLGNIEA  406 (668)
T ss_pred             CCcEEEEEecC-cEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce---EEEeeCCccceEE
Confidence            67787777654 33344433112222478888888888754  788899999 89999999984   5677778889999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCcccee
Q 002641          861 LAILQSGEMLYSGSLDKTARVRSNDSFTYAI  891 (897)
Q Consensus       861 lafspdg~~L~SgS~D~tIrlWdi~~~~l~~  891 (897)
                      ++.+|+|+.++.+-....+.+.|+.+|..+.
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngnv~~  437 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRL  437 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCCeeE
Confidence            9999999999999888889999999985443

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=90.45  E-value=0.16  Score=54.98  Aligned_cols=52  Identities=21%  Similarity=0.396  Sum_probs=37.7

Q ss_pred             CCcccccccccCCC--Ccee--cCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCC
Q 002641          161 PKDFVCPITTHIFD--DPVT--LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL  213 (897)
Q Consensus       161 ~~el~CpIC~~l~~--dPV~--l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~  213 (897)
                      ++++ ||+|.+-|.  |---  -+||...|+.|.....+.-+..||.||.......+
T Consensus        13 eed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv   68 (480)
T COG5175          13 EEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV   68 (480)
T ss_pred             cccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence            3444 999998774  2211  37999999999876555446689999998876654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=90.34  E-value=0.35  Score=58.63  Aligned_cols=81  Identities=17%  Similarity=0.152  Sum_probs=67.9

Q ss_pred             cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeC-CC-cE
Q 002641          804 ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DK-TA  879 (897)
Q Consensus       804 ~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~-D~-tI  879 (897)
                      +..++|..|+...+|++|+.+  .|+.|+..|.|+++++.+|  .......+|..+|+-+.=+-||..+++.|. .. -.
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc--cccccccccccccccccccCCcceeeeeccccCchH
Confidence            567788899999999999985  9999999999999999998  356778899999999998889976665553 33 45


Q ss_pred             EEEeCCC
Q 002641          880 RVRSNDS  886 (897)
Q Consensus       880 rlWdi~~  886 (897)
                      -+|++.+
T Consensus      1170 aLW~~~s 1176 (1516)
T KOG1832|consen 1170 ALWDASS 1176 (1516)
T ss_pred             HHhcccc
Confidence            6899876

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.25  E-value=7.7  Score=45.80  Aligned_cols=217  Identities=15%  Similarity=0.224  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHhc---cCChHHHHHHHHHHHHhhhccHHHHHHhhhccchHHHHHHHHhcCchHHH----HHHHHh-CC--
Q 002641          313 AVINGFVEILFN---SVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEAV----VLIDLL-RP--  382 (897)
Q Consensus       313 ~a~~~~ke~L~~---sl~~~vlk~a~~~l~el~s~~e~~~~~i~~~~~~~~~i~~llk~~~~ea~----~LL~~L-~~--  382 (897)
                      +.+......|..   +.+.+|+..+.-.+..+-....+.++.+-+. +....++.+|.......+    ..+-.+ ..  
T Consensus       233 ~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~-gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d  311 (514)
T KOG0166|consen  233 DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDA-GVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD  311 (514)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc-cchHHHHHHHcCCCcccccHHHhhccceeeccH
Confidence            344444444444   6678888888888877755544444443322 334555555544311111    011111 11  


Q ss_pred             -ChhhHHHHhhHHHHHHHHHhhcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchHHH
Q 002641          383 -STRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEE  461 (897)
Q Consensus       383 -~~~~i~~~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~  461 (897)
                       -.+.++..+.+|.|...|.+..+.      +=+..|.-.|..|-.|-     ..++-+++..|.+|.|++.+++++-.-
T Consensus       312 ~QTq~vi~~~~L~~l~~ll~~s~~~------~ikkEAcW~iSNItAG~-----~~qiqaVida~l~p~Li~~l~~~ef~~  380 (514)
T KOG0166|consen  312 EQTQVVINSGALPVLSNLLSSSPKE------SIKKEACWTISNITAGN-----QEQIQAVIDANLIPVLINLLQTAEFDI  380 (514)
T ss_pred             HHHHHHHhcChHHHHHHHhccCcch------hHHHHHHHHHHHhhcCC-----HHHHHHHHHcccHHHHHHHHhccchHH
Confidence             123345567777777777643222      12345666677776443     468889999999999999999999888


Q ss_pred             HHHHHHHHhhhccccCcch--hhHhhhcchhhHHHHHhhcCcchhHHHHHHHHHHHhhchhhhh---HHHHHHhhccCcc
Q 002641          462 RIAAVGILLRCMQEDGKCR--NSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFN---EQILHIIKDEGTY  536 (897)
Q Consensus       462 ~~~~~~il~~c~~~~~~cr--~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~~~~r~~~~---~~~l~~i~~~g~~  536 (897)
                      |..|+=.+ ++....|+-+  .|+.+..-+.||.++|.....+.-..++.-|.-+++....-..   ..+=..|++.|++
T Consensus       381 rKEAawaI-sN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggl  459 (514)
T KOG0166|consen  381 RKEAAWAI-SNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGL  459 (514)
T ss_pred             HHHHHHHH-HhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccCh
Confidence            88765444 3555555544  7999999999999999665555556678888888877643332   4455677788887


Q ss_pred             chhhHH
Q 002641          537 SSMHTL  542 (897)
Q Consensus       537 ~~m~~l  542 (897)
                      .-|..|
T Consensus       460 dkiE~L  465 (514)
T KOG0166|consen  460 DKIENL  465 (514)
T ss_pred             hHHHHh
Confidence            766544

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=90.22  E-value=0.25  Score=47.09  Aligned_cols=51  Identities=16%  Similarity=0.241  Sum_probs=43.0

Q ss_pred             CcccccccccCCCCceec----CCCcccchHHHHHHHhcC--CCCCCCCCcccCCCC
Q 002641          162 KDFVCPITTHIFDDPVTL----ETGQTYERRAIQEWIERG--NSSCPITRQKLSSTK  212 (897)
Q Consensus       162 ~el~CpIC~~l~~dPV~l----~CGHtFCr~CI~~~~~~~--~~~CP~Cr~~~~~~~  212 (897)
                      .-+.|.||.+...|+.-+    .||-+-|..|-...|+..  .+.||+|+..+....
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~  135 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS  135 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence            467899999999998876    699999999999988743  457999999886554

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=90.14  E-value=24  Score=38.22  Aligned_cols=184  Identities=11%  Similarity=0.191  Sum_probs=119.8

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHhhhccHHHHHHhhhccchHHHHHHHHhcC----chHHHHHHHHhCCChhhHHH
Q 002641          314 VINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIE  389 (897)
Q Consensus       314 a~~~~ke~L~~sl~~~vlk~a~~~l~el~s~~e~~~~~i~~~~~~~~~i~~llk~~----~~ea~~LL~~L~~~~~~i~~  389 (897)
                      -.+.+...|..+-++-+.+.+...+... .......+.|.+. +.+.-|..++...    ..+|-..|..|+...+|...
T Consensus        13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~~nq~~Ir~~-Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~   90 (254)
T PF04826_consen   13 ELQKLLCLLESTEDPFIQEKALIALGNS-AAFPFNQDIIRDL-GGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ   90 (254)
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhh-ccChhHHHHHHHc-CCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence            3466667777777776666666666554 3334445555543 3467777888665    44566689999999988887


Q ss_pred             HhhHHHHHHHHHh-hcchh-hhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchHHHHHHHHH
Q 002641          390 MDMMESLMTVIKK-KEEDF-LKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVG  467 (897)
Q Consensus       390 ~~~~~~Ll~~l~~-~~~~~-~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~  467 (897)
                      +..  ++-++++. .+.++ +.    =+-|++-+|-.+=...|+       ..++ .+.++.++..+..|+..-|+.+..
T Consensus        91 Ik~--~i~~Vc~~~~s~~lns~----~Q~agLrlL~nLtv~~~~-------~~~l-~~~i~~ll~LL~~G~~~~k~~vLk  156 (254)
T PF04826_consen   91 IKM--YIPQVCEETVSSPLNSE----VQLAGLRLLTNLTVTNDY-------HHML-ANYIPDLLSLLSSGSEKTKVQVLK  156 (254)
T ss_pred             HHH--HHHHHHHHHhcCCCCCH----HHHHHHHHHHccCCCcch-------hhhH-HhhHHHHHHHHHcCChHHHHHHHH
Confidence            764  44444443 11111 01    124677777666433321       2333 347999999999999999988766


Q ss_pred             HHhhhccccCcchhhHhhhcchhhHHHHHhhcCcch-hHHHHHHHHHH
Q 002641          468 ILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGE-RFEIVCFLSEL  514 (897)
Q Consensus       468 il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~-~~~~~~~l~el  514 (897)
                       ++.++..+..-...+..+-.++.|+.||.+...++ -..+|.||--|
T Consensus       157 -~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni  203 (254)
T PF04826_consen  157 -VLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENI  203 (254)
T ss_pred             -HHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHH
Confidence             56789999998777777788999999999864444 55566665544

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.83  E-value=0.33  Score=38.79  Aligned_cols=45  Identities=18%  Similarity=0.257  Sum_probs=22.6

Q ss_pred             cccccccccCCCCceec-CCCcccc--hHHHHHHH-hcCCCCCCCCCcc
Q 002641          163 DFVCPITTHIFDDPVTL-ETGQTYE--RRAIQEWI-ERGNSSCPITRQK  207 (897)
Q Consensus       163 el~CpIC~~l~~dPV~l-~CGHtFC--r~CI~~~~-~~~~~~CP~Cr~~  207 (897)
                      .+.|||+...+.-||.. .|.|.-|  ..-..... ..+...||+|+++
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            47899999999999986 9999754  32222222 2344579999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.81  E-value=1.1  Score=54.14  Aligned_cols=92  Identities=10%  Similarity=0.044  Sum_probs=67.0

Q ss_pred             cccEEEEecCCCCeEEEeCCcceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEE
Q 002641          784 EMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI  863 (897)
Q Consensus       784 d~~~LaSgs~DgtIklWd~~~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slaf  863 (897)
                      .++.++-|..+|.|.+.+......+...|...    .-...+++|||.||+|-|-.+.+.+  ..+++. -..++.++++
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~--~~~~~d-f~rpiksial  120 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDD--EITQYD-FKRPIKSIAL  120 (846)
T ss_pred             hcceeeeccccceEEEEecCCccccccccccc----ccCCceEEEecCCCcEEEeeccCCc--cceeEe-cCCcceeEEe
Confidence            47789999999999999987322555555443    2223499999999999999988774  233333 3456889999


Q ss_pred             ccC-----CCEEEEEeCCCcEEEEe
Q 002641          864 LQS-----GEMLYSGSLDKTARVRS  883 (897)
Q Consensus       864 spd-----g~~L~SgS~D~tIrlWd  883 (897)
                      +|+     .+.+++||.-| +.++.
T Consensus       121 ~Pd~~~~~sk~fv~GG~ag-lvL~e  144 (846)
T KOG2066|consen  121 HPDFSRQQSKQFVSGGMAG-LVLSE  144 (846)
T ss_pred             ccchhhhhhhheeecCcce-EEEeh
Confidence            998     47899999887 66654

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=89.81  E-value=0.11  Score=62.12  Aligned_cols=67  Identities=16%  Similarity=0.361  Sum_probs=51.9

Q ss_pred             CCCcccccccccCCCCceecCCCcccchHHHHHHHhc--CCCCCCCCCcccCCCCCCcccHHHHHHHHHH
Q 002641          160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER--GNSSCPITRQKLSSTKLPKTNYVLKRLIASW  227 (897)
Q Consensus       160 l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~--~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~  227 (897)
                      ...++.||||.....+|+.+.|-|.||+.|+...+..  +...||+|+..+..... +--..-.++++++
T Consensus        18 ~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~-~Es~r~sq~vqe~   86 (684)
T KOG4362|consen   18 MQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSL-RESPRFSQLSKES   86 (684)
T ss_pred             HhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhc-cccchHHHHHHHh
Confidence            4568899999999999999999999999999875543  34579999987776666 3444455555543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=89.71  E-value=1.8  Score=53.84  Aligned_cols=95  Identities=14%  Similarity=0.171  Sum_probs=70.1

Q ss_pred             EEEEecCCCCeEEEeCC--c-ceeeccCC----CCcEEEEEEeCC-EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCe
Q 002641          787 KVLSNGHDSSADFWNHR--E-LVHVDSSE----NGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAV  858 (897)
Q Consensus       787 ~LaSgs~DgtIklWd~~--~-~l~~l~gH----~~~V~sV~fspd-~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V  858 (897)
                      ....|=.+..+..||.+  . .+..-++|    +....|++-+.+ +|+.||.+|-||+||--+.  +.-..|.|-..+|
T Consensus       544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~--~AKT~lp~lG~pI  621 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGK--RAKTALPGLGDPI  621 (794)
T ss_pred             ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccch--hhhhcCCCCCCCe
Confidence            45666678888899987  1 11111232    345677777776 9999999999999995432  4566788888999


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeC
Q 002641          859 TGLAILQSGEMLYSGSLDKTARVRSN  884 (897)
Q Consensus       859 ~slafspdg~~L~SgS~D~tIrlWdi  884 (897)
                      ..|..+.||++++..+ +..+.+++.
T Consensus       622 ~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  622 IGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             eEEEecCCCcEEEEee-cceEEEEEE
Confidence            9999999999887666 556777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=89.58  E-value=2.8  Score=46.31  Aligned_cols=107  Identities=17%  Similarity=0.314  Sum_probs=77.9

Q ss_pred             hCCChhhHHHHhhHHHHHHHHHhhcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchH
Q 002641          380 LRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWA  459 (897)
Q Consensus       380 L~~~~~~i~~~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~  459 (897)
                      =.|.=+.++.-+++|-+++.+.+-.-++.++     .||-+|-...-+..+      --+-+|-.|++|.++.+|-+++.
T Consensus       103 ~~PPIq~VIdaGvVpRfvefm~~~q~~mlqf-----EAaWalTNiaSGtt~------QTkvVvd~~AVPlfiqlL~s~~~  171 (526)
T COG5064         103 TSPPIQPVIDAGVVPRFVEFMDEIQRDMLQF-----EAAWALTNIASGTTQ------QTKVVVDAGAVPLFIQLLSSTED  171 (526)
T ss_pred             cCCCchhHHhccccHHHHHHHHhcchhHHHH-----HHHHHHhhhccCccc------ceEEEEeCCchHHHHHHHcCchH
Confidence            3566788999999999999997643332222     456555443333332      12345778999999999999988


Q ss_pred             HHHHHHHHHHhhhccccC-cchhhHhhhcchhhHHHHHhh
Q 002641          460 EERIAAVGILLRCMQEDG-KCRNSIADKAELAPVMESFMA  498 (897)
Q Consensus       460 ~~~~~~~~il~~c~~~~~-~cr~~~~~~~~~~~~~~ll~~  498 (897)
                      +.|-.++ --|.+++-|. .||.|+.+...++|++++|.+
T Consensus       172 ~V~eQav-WALGNiAGDS~~~RD~vL~~galeplL~ll~s  210 (526)
T COG5064         172 DVREQAV-WALGNIAGDSEGCRDYVLQCGALEPLLGLLLS  210 (526)
T ss_pred             HHHHHHH-HHhccccCCchhHHHHHHhcCchHHHHHHHHh
Confidence            8887753 3467777665 599999999999999999985

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=89.27  E-value=2.8  Score=53.59  Aligned_cols=113  Identities=11%  Similarity=0.042  Sum_probs=70.8

Q ss_pred             eeEeeecccccEEEEecCCCCeEEE----eCC-cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCC----CCc
Q 002641          776 RKYSPLAFEMVKVLSNGHDSSADFW----NHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR----GSI  844 (897)
Q Consensus       776 ~~~~~~s~d~~~LaSgs~DgtIklW----d~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~----~~~  844 (897)
                      +....|-.+...++.+..+|-|.+.    |.. ..+.....-.+.|.+.+||||  +++....+|++-+-+-.    ...
T Consensus        78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~  157 (928)
T PF04762_consen   78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEV  157 (928)
T ss_pred             EEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEe
Confidence            3344455567777788888999888    555 334433334789999999998  66666667776554321    100


Q ss_pred             -----------------ceeEEEeec------------------------cCCCeEEEEEccCCCEEEEEeC----C--C
Q 002641          845 -----------------LHLIQQIRE------------------------HTKAVTGLAILQSGEMLYSGSL----D--K  877 (897)
Q Consensus       845 -----------------~~~i~~l~g------------------------H~~~V~slafspdg~~L~SgS~----D--~  877 (897)
                                       ++--..|+|                        +...-..++|-.||.+++..+.    +  +
T Consensus       158 ~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R  237 (928)
T PF04762_consen  158 PLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRR  237 (928)
T ss_pred             ecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCcee
Confidence                             011112222                        1123357889999999998885    2  5


Q ss_pred             cEEEEeCCCccc
Q 002641          878 TARVRSNDSFTY  889 (897)
Q Consensus       878 tIrlWdi~~~~l  889 (897)
                      .+|||+-. |.+
T Consensus       238 ~iRVy~Re-G~L  248 (928)
T PF04762_consen  238 VIRVYSRE-GEL  248 (928)
T ss_pred             EEEEECCC-ceE
Confidence            89999944 643

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.21  E-value=0.26  Score=51.62  Aligned_cols=52  Identities=19%  Similarity=0.369  Sum_probs=43.0

Q ss_pred             CCCcccccccccCCCCcee----cCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCC
Q 002641          160 PPKDFVCPITTHIFDDPVT----LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP  214 (897)
Q Consensus       160 l~~el~CpIC~~l~~dPV~----l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~  214 (897)
                      -...|.|||.+-.|..-..    -+|||.|....+.+.-.   ..|++|+..+...+.+
T Consensus       108 ~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika---s~C~~C~a~y~~~dvI  163 (293)
T KOG3113|consen  108 QRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA---SVCHVCGAAYQEDDVI  163 (293)
T ss_pred             ccceeecccccceecceEEEEEEeccceeccHHHHHHhhh---ccccccCCcccccCeE
Confidence            3568999999999988654    49999999999988753   4899999999877754

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=88.99  E-value=0.17  Score=43.37  Aligned_cols=45  Identities=24%  Similarity=0.539  Sum_probs=32.1

Q ss_pred             cccccccCCCC-ceec-CCCcccchHHHHHHHhcC--CCCCCCCCcccC
Q 002641          165 VCPITTHIFDD-PVTL-ETGQTYERRAIQEWIERG--NSSCPITRQKLS  209 (897)
Q Consensus       165 ~CpIC~~l~~d-PV~l-~CGHtFCr~CI~~~~~~~--~~~CP~Cr~~~~  209 (897)
                      .||-|.--=.| |.++ -|-|.|-..||.+|+...  ...||.||+...
T Consensus        33 ~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   33 CCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             cCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            44444433333 5555 899999999999999843  347999999764

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=88.96  E-value=0.35  Score=53.26  Aligned_cols=63  Identities=11%  Similarity=0.251  Sum_probs=49.4

Q ss_pred             CCCCcccccccccCCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHHHH
Q 002641          159 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQE  229 (897)
Q Consensus       159 ~l~~el~CpIC~~l~~dPV~l-~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~~~  229 (897)
                      ...+-+.||||.+.+.-|+.= .=||.-|..|-.+.    ...||.|+.++.  .+  .++++..+++....
T Consensus        44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g--~~--R~~amEkV~e~~~v  107 (299)
T KOG3002|consen   44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPTCRLPIG--NI--RCRAMEKVAEAVLV  107 (299)
T ss_pred             cchhhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCccccccc--cH--HHHHHHHHHHhcee
Confidence            455678899999999999754 66999999997542    347999999887  33  68888888877654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=88.95  E-value=7.2  Score=43.46  Aligned_cols=117  Identities=12%  Similarity=0.129  Sum_probs=77.4

Q ss_pred             cceeEeeecccccEEEEecCC---CCeEEEeCC------cceeeccCCCCcEEEEEEeCC--EEEEEec-CCeEEEEeCC
Q 002641          774 ELRKYSPLAFEMVKVLSNGHD---SSADFWNHR------ELVHVDSSENGKVLSIACFRD--KIFSGHS-DGTIKVWTGR  841 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~D---gtIklWd~~------~~l~~l~gH~~~V~sV~fspd--~L~Sgs~-DgtIrlWd~~  841 (897)
                      ....++.++++.+.|.++..+   |.|--|.++      ..+.....-..+-+.|+++++  +++++.. -|.|.++-++
T Consensus        40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~  119 (346)
T COG2706          40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQ  119 (346)
T ss_pred             CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcc
Confidence            445667777888777666544   666666554      122222222334488999986  6666654 5899999997


Q ss_pred             C-CcceeEEEeeccCCC----------eEEEEEccCCCEEEEEe--CCCcEEEEeCCCcccee
Q 002641          842 G-SILHLIQQIREHTKA----------VTGLAILQSGEMLYSGS--LDKTARVRSNDSFTYAI  891 (897)
Q Consensus       842 ~-~~~~~i~~l~gH~~~----------V~slafspdg~~L~SgS--~D~tIrlWdi~~~~l~~  891 (897)
                      . +.+........|.+.          +.+..|.|+|+++++..  .| .|.+|++..|.+..
T Consensus       120 ~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~  181 (346)
T COG2706         120 ADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTP  181 (346)
T ss_pred             cCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCcccc
Confidence            5 443333334446665          89999999999999886  45 58899999875443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=88.57  E-value=1.2  Score=35.09  Aligned_cols=31  Identities=13%  Similarity=0.133  Sum_probs=28.3

Q ss_pred             CCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641          855 TKAVTGLAILQSGEMLYSGSLDKTARVRSND  885 (897)
Q Consensus       855 ~~~V~slafspdg~~L~SgS~D~tIrlWdi~  885 (897)
                      ...|.+++|+|....|+.|+.||.|.++.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3469999999999999999999999999983

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=87.71  E-value=11  Score=40.00  Aligned_cols=115  Identities=14%  Similarity=-0.025  Sum_probs=71.9

Q ss_pred             ceeEeeecccccEEEEecCC--------CCeEEEeCCcceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCC
Q 002641          775 LRKYSPLAFEMVKVLSNGHD--------SSADFWNHRELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGS  843 (897)
Q Consensus       775 ~~~~~~~s~d~~~LaSgs~D--------gtIklWd~~~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~  843 (897)
                      ..+-..+.++|+..++.+..        |.+..++...........-.....++|+||   ++++-+..+.|..+++...
T Consensus        87 ~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~  166 (246)
T PF08450_consen   87 RPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD  166 (246)
T ss_dssp             EEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeEEEecccc
Confidence            34445667788877765544        345555555223333333456789999997   4557778899999998643


Q ss_pred             c--ceeEEEe---eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCccc
Q 002641          844 I--LHLIQQI---REHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTY  889 (897)
Q Consensus       844 ~--~~~i~~l---~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l  889 (897)
                      .  ......+   .+-.+..-.+++..+|++.++....+.|.++|..+..+
T Consensus       167 ~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~  217 (246)
T PF08450_consen  167 GGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLL  217 (246)
T ss_dssp             TCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEE
T ss_pred             ccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEE
Confidence            2  1112223   22233477899999999888888889999999874333

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=87.38  E-value=24  Score=42.27  Aligned_cols=118  Identities=8%  Similarity=0.162  Sum_probs=90.7

Q ss_pred             HHHhhHHHHHHHHHhhcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchHHHHHHHHH
Q 002641          388 IEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVG  467 (897)
Q Consensus       388 ~~~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~  467 (897)
                      ...++++.++..|..++..       =..+|.-+|..+....      .+...++..+.+..|...+...+...|..+-+
T Consensus       116 ~~~~l~~~i~~~L~~~d~~-------Va~~A~~~L~~l~~~~------~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~e  182 (503)
T PF10508_consen  116 VDNELLPLIIQCLRDPDLS-------VAKAAIKALKKLASHP------EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYE  182 (503)
T ss_pred             cCccHHHHHHHHHcCCcHH-------HHHHHHHHHHHHhCCc------hhHHHHhCcchHHHHHHHHhccCHHHHHHHHH
Confidence            3356777788888665544       1234555666665322      35667888888999999998878888999989


Q ss_pred             HHhhhccccCcchhhHhhhcchhhHHHHHhhcCcchhHHHHHHHHHHHhhc
Q 002641          468 ILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLN  518 (897)
Q Consensus       468 il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~~~~  518 (897)
                      ++..-.........++.+..-+..++..|.+.+-=.+.+|++.|.+|...+
T Consensus       183 l~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~  233 (503)
T PF10508_consen  183 LLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP  233 (503)
T ss_pred             HHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh
Confidence            988888888888999999888888888888866667999999999998844

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.18  E-value=1.1  Score=55.92  Aligned_cols=79  Identities=23%  Similarity=0.229  Sum_probs=58.3

Q ss_pred             CcEEEEEEeCCEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641          814 GKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       814 ~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l  892 (897)
                      ..|.+++.-...++.|++.|.|-..|..+.- .+...-..-.++|++++|+.+|..+..|-.+|.|.+||+..+ .++.+
T Consensus        90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL-~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i  168 (1206)
T KOG2079|consen   90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNL-GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI  168 (1206)
T ss_pred             cceeeeeeeeeeEEEEcCchhhhhhhhhccc-chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence            3455555545578888888999888887652 222222224568999999999999999999999999999997 55555


Q ss_pred             e
Q 002641          893 I  893 (897)
Q Consensus       893 ~  893 (897)
                      .
T Consensus       169 ~  169 (1206)
T KOG2079|consen  169 T  169 (1206)
T ss_pred             e
Confidence            4

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=86.87  E-value=0.25  Score=51.98  Aligned_cols=57  Identities=16%  Similarity=0.317  Sum_probs=35.7

Q ss_pred             cccccccCC-CCce-ecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHH
Q 002641          165 VCPITTHIF-DDPV-TLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASW  227 (897)
Q Consensus       165 ~CpIC~~l~-~dPV-~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~  227 (897)
                      .|--|+.-- .+|- ++.|+|.||..|.....   ...||.|++++....+ .+|  |..-|..+
T Consensus         5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l-~~s--lp~~ik~~   63 (233)
T KOG4739|consen    5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQL-NRS--LPTDIKSY   63 (233)
T ss_pred             EeccccccCCCCceeeeechhhhhhhhcccCC---ccccccccceeeeeec-ccc--cchhHHHH
Confidence            466554332 2343 45999999999976432   2289999999766655 333  44444443

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.10  E-value=4.6  Score=47.56  Aligned_cols=126  Identities=17%  Similarity=0.196  Sum_probs=87.9

Q ss_pred             CChhhHHHHhhHHHHHHHHHhhcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchHHH
Q 002641          382 PSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEE  461 (897)
Q Consensus       382 ~~~~~i~~~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~  461 (897)
                      |.-.+++.-+.+|-|++.|+..+.+-     ..-.||-+|-..--+.+      ++-..++..|++|.++..+.+.+..-
T Consensus       100 ppi~~vi~~G~v~~lV~~l~~~~~~~-----lq~eAAWaLTnIAsgts------e~T~~vv~agavp~fi~Ll~s~~~~v  168 (514)
T KOG0166|consen  100 PPIDEVIQSGVVPRLVEFLSRDDNPT-----LQFEAAWALTNIASGTS------EQTKVVVDAGAVPIFIQLLSSPSADV  168 (514)
T ss_pred             CCHHHHHHcCcHHHHHHHHccCCChh-----HHHHHHHHHHHHhcCch------hhccccccCCchHHHHHHhcCCcHHH
Confidence            33455666689999999998654321     13356666655444443      47778899999999999999998888


Q ss_pred             HHHHHHHHhhhccccCcchhhHhhhcchhhHHHHHhhcCc-chhHHHHHHHHHHHhhc
Q 002641          462 RIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASD-GERFEIVCFLSELVKLN  518 (897)
Q Consensus       462 ~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~-~~~~~~~~~l~el~~~~  518 (897)
                      +-.|+--|-+=..-...||+++.+...+.|++.++..... .-..++.-.|+-|.+..
T Consensus       169 ~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk  226 (514)
T KOG0166|consen  169 REQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK  226 (514)
T ss_pred             HHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence            8887555544444445899999999999999999876443 34444555555554443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=85.66  E-value=21  Score=37.88  Aligned_cols=103  Identities=11%  Similarity=-0.014  Sum_probs=64.9

Q ss_pred             eecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEe-CC-EEEEEecCCeEEEEeCCCCcceeEEEee--c-
Q 002641          780 PLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACF-RD-KIFSGHSDGTIKVWTGRGSILHLIQQIR--E-  853 (897)
Q Consensus       780 ~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fs-pd-~L~Sgs~DgtIrlWd~~~~~~~~i~~l~--g-  853 (897)
                      |...++.++++.-..+.|..|+.. .....+....  ...+++. ++ .++.+..++. .++|..+++...+....  . 
T Consensus         7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~   83 (246)
T PF08450_consen    7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPDGGV   83 (246)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEETTCS
T ss_pred             EECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccCCCc
Confidence            334467788888788999999987 3333222222  6677777 55 6777666555 45598887544444442  1 


Q ss_pred             cCCCeEEEEEccCCCEEEEEeCC--------CcEEEEeCC
Q 002641          854 HTKAVTGLAILQSGEMLYSGSLD--------KTARVRSND  885 (897)
Q Consensus       854 H~~~V~slafspdg~~L~SgS~D--------~tIrlWdi~  885 (897)
                      .....+.+++.|+|+..++.+..        +.+..++..
T Consensus        84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~  123 (246)
T PF08450_consen   84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD  123 (246)
T ss_dssp             CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred             ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC
Confidence            33467899999999988777654        345556655

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=85.64  E-value=13  Score=38.85  Aligned_cols=99  Identities=11%  Similarity=0.037  Sum_probs=64.9

Q ss_pred             cccEEEEecCCCCeEEEeCC--cceeeccCCCCc-----------EEEEEEeCCEEEEEecCC-eEEEEeCCCCcceeEE
Q 002641          784 EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGK-----------VLSIACFRDKIFSGHSDG-TIKVWTGRGSILHLIQ  849 (897)
Q Consensus       784 d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~-----------V~sV~fspd~L~Sgs~Dg-tIrlWd~~~~~~~~i~  849 (897)
                      ++..++.+..++.+..+|..  +.+.....+...           ...+.+..+.++.++.++ .+.+ |+.+++  .+.
T Consensus       121 ~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~--~~w  197 (238)
T PF13360_consen  121 DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGE--KLW  197 (238)
T ss_dssp             ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTE--EEE
T ss_pred             ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCC--EEE
Confidence            47778888889999999976  554444443321           133344445777777777 4667 999984  233


Q ss_pred             EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCcc
Q 002641          850 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFT  888 (897)
Q Consensus       850 ~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~  888 (897)
                      ...  -..+..+ ..+++..++.++.|+.+..||+++|.
T Consensus       198 ~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  198 SKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             EEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             Eec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence            222  2223321 34678888888899999999999983

...

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=85.49  E-value=0.29  Score=57.62  Aligned_cols=102  Identities=11%  Similarity=0.170  Sum_probs=77.0

Q ss_pred             cEEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeC-C--EEEEEe----cCCeEEEEeCCCC--cceeEEEee
Q 002641          786 VKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFR-D--KIFSGH----SDGTIKVWTGRGS--ILHLIQQIR  852 (897)
Q Consensus       786 ~~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fsp-d--~L~Sgs----~DgtIrlWd~~~~--~~~~i~~l~  852 (897)
                      -.++.|..+|.|-+-.++    ....+..+|....++++|++ |  .|+.|-    .|..+++||+.+.  .+..-..|.
T Consensus        71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs  150 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS  150 (783)
T ss_pred             hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence            467889999999998876    33555667889999999998 3  787774    3678999999876  211122233


Q ss_pred             c-cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          853 E-HTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       853 g-H~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      + ....+.+++|..+.+.+.+|...+.+.++|++..
T Consensus       151 ~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs  186 (783)
T KOG1008|consen  151 SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS  186 (783)
T ss_pred             cccccCccccccccCcchhhcccccchhhhhhhhhh
Confidence            3 3445668899888899999999999999999843

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=84.96  E-value=7.2  Score=50.01  Aligned_cols=111  Identities=14%  Similarity=0.073  Sum_probs=75.1

Q ss_pred             ceeEeeecccccEEEEecC---C---CCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEec---CCeEEEEeCCC
Q 002641          775 LRKYSPLAFEMVKVLSNGH---D---SSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHS---DGTIKVWTGRG  842 (897)
Q Consensus       775 ~~~~~~~s~d~~~LaSgs~---D---gtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~---DgtIrlWd~~~  842 (897)
                      ....+.+-.||.++|.++.   +   ..+|||+-. .+..+-..-.+--.+++|.|.  +|++...   ...|-+|.-++
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG  290 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG  290 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC
Confidence            4445556679999988875   2   478999976 443333333455568899985  7777654   35666776554


Q ss_pred             CcceeEEEee--ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641          843 SILHLIQQIR--EHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       843 ~~~~~i~~l~--gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~  887 (897)
                      -. .--..++  .....|..++|++|++.|+..-.|. |.+|-..+.
T Consensus       291 Lr-hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY  335 (928)
T PF04762_consen  291 LR-HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY  335 (928)
T ss_pred             cE-eeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence            32 1112222  3456799999999999999987666 999988775

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=84.62  E-value=16  Score=40.42  Aligned_cols=36  Identities=11%  Similarity=0.044  Sum_probs=29.3

Q ss_pred             cCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCccc
Q 002641          854 HTKAVTGLAILQSGEMLYSGS-LDKTARVRSNDSFTY  889 (897)
Q Consensus       854 H~~~V~slafspdg~~L~SgS-~D~tIrlWdi~~~~l  889 (897)
                      -.++|-+|+++++|..++..| ..+.+-+||..+|.+
T Consensus       215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~  251 (305)
T PF07433_consen  215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL  251 (305)
T ss_pred             hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence            346889999999998776666 577999999999843

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=84.18  E-value=2.1  Score=49.86  Aligned_cols=74  Identities=16%  Similarity=0.157  Sum_probs=54.5

Q ss_pred             cEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCC-----------CcEEE
Q 002641          815 KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-----------KTARV  881 (897)
Q Consensus       815 ~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D-----------~tIrl  881 (897)
                      .-+.|.|||-  +|+|-+.-| |.+|--.+-  ..++.|. |. .|..+.|||..++|+|=|..           ..++|
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f--~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I  286 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-IALWGGESF--DRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII  286 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-eeeecCccH--HHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence            3567899995  787766655 678977654  2344443 54 48889999999999987742           57899


Q ss_pred             EeCCCc-cceeee
Q 002641          882 RSNDSF-TYAIFI  893 (897)
Q Consensus       882 Wdi~~~-~l~~l~  893 (897)
                      ||+++| ....|.
T Consensus       287 WDI~tG~lkrsF~  299 (698)
T KOG2314|consen  287 WDIATGLLKRSFP  299 (698)
T ss_pred             EEccccchhccee
Confidence            999999 666664

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.12  E-value=4  Score=47.60  Aligned_cols=94  Identities=15%  Similarity=0.149  Sum_probs=68.5

Q ss_pred             EEecCCCCeEEEeCC----cceeeccCCC----CcEEEEEEeCC-EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeE
Q 002641          789 LSNGHDSSADFWNHR----ELVHVDSSEN----GKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT  859 (897)
Q Consensus       789 aSgs~DgtIklWd~~----~~l~~l~gH~----~~V~sV~fspd-~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~  859 (897)
                      +.|=.|..|.-||.+    ..+...++|.    ....|.+-..+ +++.||.+|-||+||--..  +.-..|.|-..+|.
T Consensus       398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~--~AKTAlPgLG~~I~  475 (644)
T KOG2395|consen  398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGR--RAKTALPGLGDAIK  475 (644)
T ss_pred             EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhh--hhhhcccccCCcee
Confidence            345567888889987    2455556663    34555555555 9999999999999998443  45667889999999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641          860 GLAILQSGEMLYSGSLDKTARVRSND  885 (897)
Q Consensus       860 slafspdg~~L~SgS~D~tIrlWdi~  885 (897)
                      .|..+.+|++|+..+ +..+.+-++.
T Consensus       476 hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  476 HVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             eEEeeccCcEEEEec-ccEEEEEEEe
Confidence            999999999877655 5566665553

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=83.81  E-value=0.92  Score=48.14  Aligned_cols=45  Identities=22%  Similarity=0.411  Sum_probs=37.0

Q ss_pred             cccccccccCCCCceec-CCCcccchHHHHHHHhcC-CCCCCCCCcc
Q 002641          163 DFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERG-NSSCPITRQK  207 (897)
Q Consensus       163 el~CpIC~~l~~dPV~l-~CGHtFCr~CI~~~~~~~-~~~CP~Cr~~  207 (897)
                      +++|||....+..||+- .|||.|.|.-|..++... ...||+-+..
T Consensus       176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~  222 (262)
T KOG2979|consen  176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE  222 (262)
T ss_pred             cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence            68999999999999975 999999999999988742 3469974433

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.54  E-value=1.1  Score=50.39  Aligned_cols=35  Identities=11%  Similarity=0.181  Sum_probs=28.2

Q ss_pred             CCcccccccccCCCCc---eecCCCcccchHHHHHHHh
Q 002641          161 PKDFVCPITTHIFDDP---VTLETGQTYERRAIQEWIE  195 (897)
Q Consensus       161 ~~el~CpIC~~l~~dP---V~l~CGHtFCr~CI~~~~~  195 (897)
                      ..-|.|.||.+-..=-   +-++|+|.||+.|...|+.
T Consensus       182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~  219 (445)
T KOG1814|consen  182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT  219 (445)
T ss_pred             hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence            3457899999877543   3469999999999999886

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=83.53  E-value=3.3  Score=32.04  Aligned_cols=32  Identities=16%  Similarity=0.107  Sum_probs=27.0

Q ss_pred             CCeEEEEEccC-C--CEEEEEeCCCcEEEEeCCCc
Q 002641          856 KAVTGLAILQS-G--EMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       856 ~~V~slafspd-g--~~L~SgS~D~tIrlWdi~~~  887 (897)
                      ++|.+++|+|+ +  ..|+-+-.-+.|.++|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            47899999985 4  58888888899999999965

It contains a characteristic DLL sequence motif.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=82.93  E-value=0.33  Score=57.13  Aligned_cols=114  Identities=20%  Similarity=0.253  Sum_probs=75.9

Q ss_pred             eecccccccceeEeee-cccccEEEEec----CCCCeEEEeCCcc------eeeccC-CCCcEEEEEEeCC--EEEEEec
Q 002641          766 KDIMKGLRELRKYSPL-AFEMVKVLSNG----HDSSADFWNHREL------VHVDSS-ENGKVLSIACFRD--KIFSGHS  831 (897)
Q Consensus       766 ~~~l~~~~~~~~~~~~-s~d~~~LaSgs----~DgtIklWd~~~~------l~~l~g-H~~~V~sV~fspd--~L~Sgs~  831 (897)
                      |.+..++...-+..++ +-|..+||.|-    .|..++|||+...      -..|.+ -...+.+++|-.+  ++.+|..
T Consensus        95 ~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~  174 (783)
T KOG1008|consen   95 AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT  174 (783)
T ss_pred             ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc
Confidence            3344444433333333 33666777664    3568999998621      111222 2344568888876  8899999


Q ss_pred             CCeEEEEeCCCCcceeEEEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEe
Q 002641          832 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVRS  883 (897)
Q Consensus       832 DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafsp-dg~~L~SgS~D~tIrlWd  883 (897)
                      ...++++|++..   +...-.-.++.|..+.++| .++++++-+ ||.|-+||
T Consensus       175 sr~~~ifdlRqs---~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD  223 (783)
T KOG1008|consen  175 SRSVHIFDLRQS---LDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWD  223 (783)
T ss_pred             cchhhhhhhhhh---hhhhhhhhhhhcccceecCCCCCceeccc-cCceeecc
Confidence            999999999964   2333334577788888889 788888777 99999999

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=82.49  E-value=0.61  Score=56.83  Aligned_cols=87  Identities=15%  Similarity=0.145  Sum_probs=59.6

Q ss_pred             CCeEEEeCC----c-----ceeeccCCCCcEEEEEEeC---C--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEE
Q 002641          795 SSADFWNHR----E-----LVHVDSSENGKVLSIACFR---D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG  860 (897)
Q Consensus       795 gtIklWd~~----~-----~l~~l~gH~~~V~sV~fsp---d--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~s  860 (897)
                      |..-|||++    +     .++..+.....+.-|.|.|   +  ++.-|-.|++|++.......   ...|++|..+++.
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~---~~l~rsHs~~~~d  229 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL---RSLFRSHSQRVTD  229 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH---HHHHHhcCCCccc
Confidence            455678865    1     2333334455667777876   3  66667778999988877652   3457778887776


Q ss_pred             EE-----------EccCCCEEEEEeCCCcEEEEeC
Q 002641          861 LA-----------ILQSGEMLYSGSLDKTARVRSN  884 (897)
Q Consensus       861 la-----------fspdg~~L~SgS~D~tIrlWdi  884 (897)
                      ++           .||||+.|+.++.||.+++|.+
T Consensus       230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             HHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            65           4678888888888888888765

>PRK02888 nitrous-oxide reductase; Validated

Probab=82.34  E-value=13  Score=44.93  Aligned_cols=92  Identities=13%  Similarity=-0.035  Sum_probs=62.1

Q ss_pred             CCCeEEEeCCc----c--eeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcc----------eeEEEeecc
Q 002641          794 DSSADFWNHRE----L--VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSIL----------HLIQQIREH  854 (897)
Q Consensus       794 DgtIklWd~~~----~--l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~----------~~i~~l~gH  854 (897)
                      +++|.+.|...    .  +..+-.-....+.+.++||   .+++|..+++|.|.|+.+.+.          ..+.+..- 
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-  373 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-  373 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence            34577777553    1  1111123456788999998   677788899999999987530          11222222 


Q ss_pred             CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641          855 TKAVTGLAILQSGEMLYSGSLDKTARVRSNDS  886 (897)
Q Consensus       855 ~~~V~slafspdg~~L~SgS~D~tIrlWdi~~  886 (897)
                      ...-...+|.++|+...|-..|..|-.||+.+
T Consensus       374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            22334568999999888889999999999876

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=82.15  E-value=7.8  Score=45.39  Aligned_cols=105  Identities=7%  Similarity=0.038  Sum_probs=71.8

Q ss_pred             eeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEec-----------CCeEEEEeC
Q 002641          776 RKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHS-----------DGTIKVWTG  840 (897)
Q Consensus       776 ~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~-----------DgtIrlWd~  840 (897)
                      -++..++|-|.||+|--.- -|.+|-=.  ..++.| .| ..|..+.|||.  +|+|=|.           ...+.|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF-~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRF-YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEecc-ceeeecCccHHHHHhc-cC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            3567788999999987554 46688754  222222 23 45889999996  8888542           257899999


Q ss_pred             CCCcceeEEEeec--cCCCeE-EEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641          841 RGSILHLIQQIRE--HTKAVT-GLAILQSGEMLYSGSLDKTARVRSNDS  886 (897)
Q Consensus       841 ~~~~~~~i~~l~g--H~~~V~-slafspdg~~L~SgS~D~tIrlWdi~~  886 (897)
                      .+|.  ..+.|..  ....++ -+.||.|+++++.-..| +|.|++..+
T Consensus       290 ~tG~--lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtps  335 (698)
T KOG2314|consen  290 ATGL--LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPS  335 (698)
T ss_pred             cccc--hhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCc
Confidence            9994  4555554  222333 46899999999887765 577887654

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=82.06  E-value=1.4  Score=33.35  Aligned_cols=35  Identities=17%  Similarity=0.098  Sum_probs=31.1

Q ss_pred             ccchhhhccchhHHHHHHhhhcchHHHHHHHHHHH
Q 002641          435 SSIANTIVSSKVFESVISSLEAEWAEERIAAVGIL  469 (897)
Q Consensus       435 ~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~il  469 (897)
                      +.|+..++..|+++.|+.++++++.+-+..++.-|
T Consensus         2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al   36 (41)
T PF00514_consen    2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWAL   36 (41)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHH
Confidence            46889999999999999999999999999876554

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=81.93  E-value=50  Score=42.53  Aligned_cols=79  Identities=23%  Similarity=0.172  Sum_probs=45.2

Q ss_pred             hhcCCcccccccchhhhccchhHHHHHHhhhcchHHHHHHHHHHHhhhccccCcchhhHhhh--cchhhHHHHHhhcCcc
Q 002641          425 MIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADK--AELAPVMESFMAASDG  502 (897)
Q Consensus       425 ~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c~~~~~~cr~~~~~~--~~~~~~~~ll~~~~~~  502 (897)
                      .|..-|......-+.++.+.+..+.|+..++..+.+.|..++.-|-           .+.+.  ..+..++.++...+..
T Consensus       722 ~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~-----------~~~~~~~~~~~~L~~ll~D~d~~  790 (897)
T PRK13800        722 ALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLA-----------TLGAGGAPAGDAVRALTGDPDPL  790 (897)
T ss_pred             HhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHH-----------HhccccchhHHHHHHHhcCCCHH
Confidence            3333333333334445555555667777788888888887766553           11111  1145566666666666


Q ss_pred             hhHHHHHHHHHH
Q 002641          503 ERFEIVCFLSEL  514 (897)
Q Consensus       503 ~~~~~~~~l~el  514 (897)
                      .|..++..|-.+
T Consensus       791 VR~aA~~aLg~~  802 (897)
T PRK13800        791 VRAAALAALAEL  802 (897)
T ss_pred             HHHHHHHHHHhc
Confidence            677777766554

>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.85  E-value=0.54  Score=54.06  Aligned_cols=68  Identities=15%  Similarity=0.216  Sum_probs=48.8

Q ss_pred             CCCCccccccc-ccCCCCceec--CCCcccchHHHHHHHhcCCCCCCCCCcccC-CCCCCcccHHHHHHHHHHHH
Q 002641          159 TPPKDFVCPIT-THIFDDPVTL--ETGQTYERRAIQEWIERGNSSCPITRQKLS-STKLPKTNYVLKRLIASWQE  229 (897)
Q Consensus       159 ~l~~el~CpIC-~~l~~dPV~l--~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~-~~~~~~pN~~L~~li~~~~~  229 (897)
                      .+++.+.|++| .+.|.+-+++  .|+.+||..||.+.+-.  ..||.|.+.-. ...+ .++..++..+.....
T Consensus       215 ~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~--~~~~~c~~~~~~~~~~-~~p~~~r~~~n~~~a  286 (448)
T KOG0314|consen  215 ELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS--KSMCVCGASNVLADDL-LPPKTLRDTINRILA  286 (448)
T ss_pred             cCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc--ccCCcchhhccccccc-CCchhhHHHHHHHHh
Confidence            68889999999 9999999988  89999999999886653  34666654422 2233 466666666655444

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.57  E-value=0.93  Score=52.01  Aligned_cols=50  Identities=18%  Similarity=0.284  Sum_probs=34.3

Q ss_pred             cccccccccCCCCc-e---ecCCCcccchHHHHHHHhc-----CCCCCCC--CCcccCCCC
Q 002641          163 DFVCPITTHIFDDP-V---TLETGQTYERRAIQEWIER-----GNSSCPI--TRQKLSSTK  212 (897)
Q Consensus       163 el~CpIC~~l~~dP-V---~l~CGHtFCr~CI~~~~~~-----~~~~CP~--Cr~~~~~~~  212 (897)
                      ...|.||..-..++ -   +..|||-||..|..+++..     ....||.  |...++...
T Consensus       146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~  206 (384)
T KOG1812|consen  146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLES  206 (384)
T ss_pred             cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHH
Confidence            57899999333222 2   4579999999999999872     2346774  666665544

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=81.56  E-value=6.3  Score=45.68  Aligned_cols=88  Identities=11%  Similarity=0.086  Sum_probs=64.9

Q ss_pred             CCeEEEeCC-cceeeccCCCCcEEEEEEeCC----EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCE
Q 002641          795 SSADFWNHR-ELVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEM  869 (897)
Q Consensus       795 gtIklWd~~-~~l~~l~gH~~~V~sV~fspd----~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~  869 (897)
                      ..+.|+++. ..+.+..+-.++|..++|+|+    -+++|-.+-++-++|+++.   ....+.  .+.=..+-|+|.+++
T Consensus       255 snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~~P--e~~rNT~~fsp~~r~  329 (561)
T COG5354         255 SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFYFP--EQKRNTIFFSPHERY  329 (561)
T ss_pred             ceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc---eEEecC--CcccccccccCcccE
Confidence            456677776 444444466899999999985    5666778999999999986   333333  333355779999999


Q ss_pred             EEEEeCC---CcEEEEeCCCc
Q 002641          870 LYSGSLD---KTARVRSNDSF  887 (897)
Q Consensus       870 L~SgS~D---~tIrlWdi~~~  887 (897)
                      ++.++.|   |.|-+||..+.
T Consensus       330 il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         330 ILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             EEEecCCccccceEEeccCCc
Confidence            9998877   58889998776

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=80.86  E-value=0.98  Score=48.91  Aligned_cols=49  Identities=24%  Similarity=0.522  Sum_probs=37.9

Q ss_pred             CCCCcccccccccCCC---CceecCCCcccchHHHHHHHhcC--CCCCCCCCcc
Q 002641          159 TPPKDFVCPITTHIFD---DPVTLETGQTYERRAIQEWIERG--NSSCPITRQK  207 (897)
Q Consensus       159 ~l~~el~CpIC~~l~~---dPV~l~CGHtFCr~CI~~~~~~~--~~~CP~Cr~~  207 (897)
                      ....-|+||+-.+.-.   -||++.|||.--...+.+.-+.|  .+.||.|...
T Consensus       332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~  385 (396)
T COG5109         332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM  385 (396)
T ss_pred             cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence            4556789999777665   48999999999999998866554  4579999543

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=80.69  E-value=0.56  Score=48.75  Aligned_cols=49  Identities=22%  Similarity=0.415  Sum_probs=37.6

Q ss_pred             Cccccccccc-CCCCcee--c---CCCcccchHHHHHHHhcCCCCCC--CCCcccCC
Q 002641          162 KDFVCPITTH-IFDDPVT--L---ETGQTYERRAIQEWIERGNSSCP--ITRQKLSS  210 (897)
Q Consensus       162 ~el~CpIC~~-l~~dPV~--l---~CGHtFCr~CI~~~~~~~~~~CP--~Cr~~~~~  210 (897)
                      .+-.||||.. .+-.|=+  +   .|-|..|-+|+.+.+..|...||  .|++.+..
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK   65 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK   65 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence            4568999974 4445532  1   49999999999999999988999  78776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	897
1t1h_A	78	Nmr Solution Structure Of The U Box Domain From Atp		1e-13

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
           P+ F CPI+  +  DPV + TGQTYER +IQ+W++ G+ +CP +++ L    L   NYVL
Sbjct: 6   PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL-TPNYVL 64
Query: 221 KRLIASWQEQN 231
           K LIA W E N
Sbjct: 65  KSLIALWCESN 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	897
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	3e-18
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	4e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.002
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	7e-11
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-09
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	6e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	6e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.003
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	6e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-04
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	0.002
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	0.003
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	0.003

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 77.8 bits (191), Expect = 3e-18
 Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 156 GKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPK 215
           G    P+ F CPI+  +  DPV + TGQTYER +IQ+W++ G+ +CP +++ L    L  
Sbjct: 1   GSPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL-T 59

Query: 216 TNYVLKRLIASWQEQN 231
            NYVLK LIA W E N
Sbjct: 60  PNYVLKSLIALWCESN 75

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.3 bits (145), Expect = 4e-12
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
           P      I+  +  +P    +G TY+R+ I+E ++R     P+TR  L+  +L   N  +
Sbjct: 5   PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP-NLAM 63

Query: 221 KRLIASWQEQNPGGLD 236
           K +I ++  +N    D
Sbjct: 64  KEVIDAFISENGWVED 79

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.6 bits (153), Expect = 3e-11
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 790 SNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDK--IFSGHSDGTIKVWTGRGSIL 845
           S   D +   W+      +      +  V  +        I S   D T++VW  +    
Sbjct: 222 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-- 279

Query: 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
             ++ +  H   VT L   ++   + +GS+D+T +V
Sbjct: 280 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (117), Expect = 7e-07
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 2/91 (2%)

Query: 791 NGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQ 850
                   +        +  +   +          + SG  D TIK+W         +  
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--MCLMT 242

Query: 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
           +  H   V G+     G+ + S + DKT RV
Sbjct: 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRV 273

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 8e-04
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 788 VLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVW 838
           +LS   D +   W+++    +   ++    V S+   +    + +G  D T+KVW
Sbjct: 262 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 836 KVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
           K W  R    +    +  H   VT +       ++ S S D T +V
Sbjct: 1   KEWIPRPPEKY---ALSGHRSPVTRVIFHPVFSVMVSASEDATIKV 43

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (139), Expect = 7e-11
 Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIE--RGNSSCPITRQKLSSTKLPKTNYV 219
           K   CPI   +  +PV+ +    + +  + + +   +G S CP+ +  ++   L + +  
Sbjct: 20  KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQE-STR 78

Query: 220 LKRLIASWQE 229
             +L+    +
Sbjct: 79  FSQLVEELLK 88

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 2e-09
 Identities = 10/51 (19%), Positives = 15/51 (29%)

Query: 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213
             +C I      D      G       +  W E     CP  R ++  T+ 
Sbjct: 23  FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 73

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 4e-09
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 11/103 (10%)

Query: 788 VLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI- 844
           V+S   D++   W+      + V       V  I     +I SG  DG IKVW    ++ 
Sbjct: 191 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALD 250

Query: 845 ------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
                    ++ + EH+  V  L        + S S D T  +
Sbjct: 251 PRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 291

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.5 bits (123), Expect = 6e-09
 Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 4/57 (7%)

Query: 161 PKDFV----CPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213
           P  FV    C I  HI  DPV       + R  I   ++   S CP  R     T L
Sbjct: 17  PAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.4 bits (134), Expect = 7e-09
 Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 816 VLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSG 873
           +   A  +D  +I    ++  + ++   G+    + +++EH   VTG+        + + 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 874 SLDKTARV 881
             D+ A V
Sbjct: 70  GTDRNAYV 77

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 12/85 (14%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 799 FWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 856
             +   + +   +    + S++  +    + +G+ D    VW    +       +  H  
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--DRAGVLAGHDN 313

Query: 857 AVTGLAILQSGEMLYSGSLDKTARV 881
            V+ L +   G  + +GS D   ++
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.2 bits (113), Expect = 3e-06
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 789 LSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844
           +S   D+SA  W+ R        +     + +I  F +     +G  D T +++  R   
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259

Query: 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
             +          +T ++  +SG +L +G  D    V
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 788 VLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVW 838
           +L+   D + + W+    +   V +  + +V  +    D   + +G  D  +K+W
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 6e-08
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 160 PPKDFVCPITTHIFDDPVTLETGQ-TYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
              +F+ PI + +  DPV L + + T +R  I   +    +          +    + N 
Sbjct: 19  ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPL--TMDQIRPNT 76

Query: 219 VLKRLIASWQEQN 231
            LK  I  W  + 
Sbjct: 77  ELKEKIQRWLAER 89

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 5/105 (4%)

Query: 778 YSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKV 837
           Y P    +   + + +          +            L  A       S   D  +  
Sbjct: 232 YCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 291

Query: 838 W-TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
           W T  G+ +       + + +V    I    + + +GS DK A V
Sbjct: 292 WRTPYGASIFQS----KESSSVLSCDISVDDKYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 6/67 (8%)

Query: 813 NGKVLSIACFRD--KIFSGHSDGTIKVW---TGRGSILHLIQQIREHTKAVTGLAILQSG 867
              V ++        +++G   G +KVW                      +    +L  G
Sbjct: 51  GEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 868 EMLYSGS 874
             L  G 
Sbjct: 110 CTLIVGG 116

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 5e-07
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 800 WNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA 857
            N              VLS+A  ++   I SG  D  +  W  +    + +  ++ H  +
Sbjct: 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG--NPLLMLQGHRNS 352

Query: 858 VTGLAILQS------GEMLYSGSLDKTARV 881
           V  +A+           +  +GS D  AR+
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 821 CFRDKIFSGHSDGTIKVWTGRGSILH-----LIQQIREHTKAVTGLAILQSGEMLYSGSL 875
                I +G  D  ++VW      L        +    H  +V  +   + G+ + SGSL
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274

Query: 876 DKTARVRSNDS 886
           D++ ++ +  +
Sbjct: 275 DRSVKLWNLQN 285

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 0.003
 Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 10/61 (16%)

Query: 788 VLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDK--------IFSGHSDGTIKV 837
           +LS   D    FW+ +    + +       V+S+A               +G  D   ++
Sbjct: 323 ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

Query: 838 W 838
           W
Sbjct: 383 W 383

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (107), Expect = 1e-05
 Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 2/83 (2%)

Query: 799 FWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAV 858
           F   +                    D + +G  D  I +++ +   + +I+ +  H   V
Sbjct: 203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP-MKIIKALNAHKDGV 261

Query: 859 TGLAILQSGEMLYSGSLDKTARV 881
             L        L S   D   + 
Sbjct: 262 NNLLWETPS-TLVSSGADACIKR 283

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 8e-04
 Identities = 7/54 (12%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 790 SNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWT 839
           +   D++   ++ +   +++   ++    V ++       + S  +D  IK W 
Sbjct: 232 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 9/70 (12%)

Query: 802 HRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGL 861
           H E++   S  N  + ++    + + SG  DG I  W             ++H+  +  L
Sbjct: 2   HDEVLKTISGHNKGITALTV--NPLISGSYDGRIMEW-------SSSSMHQDHSNLIVSL 52

Query: 862 AILQSGEMLY 871
              ++ E   
Sbjct: 53  DNSKAQEYSS 62

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 1e-05
 Identities = 8/50 (16%), Positives = 11/50 (22%), Gaps = 4/50 (8%)

Query: 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSST 211
           +   C         P  L    T         +E     CPI +      
Sbjct: 5   QFLRCQQCQAEAKCPKLLPCLHTLCS----GCLEASGMQCPICQAPWPLG 50

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 15/103 (14%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 788 VLSNGHDSSADFWNHRELVHVDSSEN-----GKVLSIACFRDKIFSGHSDGTIKVWTGR- 841
           ++S   DS+   W+ +    + + +        V  +   ++ + +   DGT+K+W  + 
Sbjct: 230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 289

Query: 842 GSILHLIQQIRE--HTKAVTGLAILQSGEMLYSGSLDKTARVR 882
           G  +  +  +        V  +    +  +   GS + T   +
Sbjct: 290 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK 332

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 6e-05
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 9/128 (7%)

Query: 761 INIHMKDIMKGLRELR----KYSPLAFEMVKVLSNGHDSSADFWN--HRELVHVDSSENG 814
           + +   +    L  L+    +   L F+ + V+S   D+S   W+      +H  +    
Sbjct: 159 VKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 218

Query: 815 KVLSIACFRDKIFSGHSDGTIKVW-TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSG 873
               +    + + SG++D T+K+W    G  L  +Q   +H  AVT L    +   + + 
Sbjct: 219 LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITS 276

Query: 874 SLDKTARV 881
           S D T ++
Sbjct: 277 SDDGTVKL 284

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 5e-05
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 6/90 (6%)

Query: 799 FWNHRELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGR-GSILHLIQQIREHT 855
            W+  +     S  +  + +I  F   D I    S+    ++  R G ++H    I +  
Sbjct: 267 GWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH--ANILKDA 324

Query: 856 KAVTGLAILQSGEMLYSGSLDKTARVRSND 885
             +  +       ++ +   D  + +   D
Sbjct: 325 DQIWSVNFKGKT-LVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 2e-04
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 10/66 (15%)

Query: 813 NGKVLSIACFRDK-IFSGHSDGTIKVW---TGRGSILHLIQQIREHTKAVTGLAILQSGE 868
              V++   F D  + +G  D  I+V+     +      + Q+  H   V  L     G 
Sbjct: 12  MTSVITCLQFEDNYVITGADDKMIRVYDSINKK-----FLLQLSGHDGGVWALKYAHGG- 65

Query: 869 MLYSGS 874
           +L SGS
Sbjct: 66  ILVSGS 71

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.8 bits (101), Expect = 6e-05
 Identities = 10/61 (16%), Positives = 19/61 (31%)

Query: 821 CFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTAR 880
               ++ +G  D ++ VW       H I     H  +     I  +   + S   D   +
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293

Query: 881 V 881
            
Sbjct: 294 F 294

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 6e-04
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 848 IQQIRE-HTKAVTGLAILQSGEMLYSGSLDKTARV 881
           I Q+R  H KA+T L+    G+ L+S   +     
Sbjct: 4   IDQVRYGHNKAITALSSSADGKTLFSADAEGHINS 38

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 1e-04
 Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 11/87 (12%)

Query: 806 VHVDSSENGKVLSIACFRDKIFSGHSDGTIKVW----TGRGSILHLIQQIREHTKAVTGL 861
            +   + +  + S++       S   DG +KVW        +          H   +  +
Sbjct: 7   ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 862 AILQS-------GEMLYSGSLDKTARV 881
            +LQ+         ++ + S       
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLF 93

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 824 DKIFSGHSDGTIKVW---TGRGSILHLIQQIREHTK-AVTGLAILQSGEMLYSGSLDKTA 879
            KI S  +D TIK+W   T +     + + I   T+     L I+ + + L S S +   
Sbjct: 251 TKIASASADKTIKIWNVATLK-----VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 305

Query: 880 RV 881
             
Sbjct: 306 NF 307

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 3/74 (4%)

Query: 810 SSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE 868
            +  G  + +            +  ++         L   +   EH+   T      SG 
Sbjct: 14  RTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGS--LTDTEIYTEHSHQTTVAKTSPSGY 71

Query: 869 MLYSGSLDKTARVR 882
              SG +    R+ 
Sbjct: 72  YCASGDVHGNVRIW 85

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 788 VLSNGHDSSADFWNHR--ELVH---VDSSENGKVLSIACFRDKIFSGHSDGTIKVW 838
           + S   D +   WN    ++     V +    + L I   +  + S  ++G I   
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 5e-04
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 826 IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE-MLYSGSLDKTARV 881
             +  +D TI+VW    S       + +       + ++ +G   + S SLD T   
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 6/83 (7%)

Query: 810 SSENGKVLSIACFRD--KIFSGHSDGT-IKVWTGRGSILHLIQQIREH-TKAVTGLAI-- 863
           S++      ++       I         ++      S +  + Q   H +  VT +    
Sbjct: 14  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73

Query: 864 LQSGEMLYSGSLDKTARVRSNDS 886
           ++  + L SG       V     
Sbjct: 74  IKGSQYLCSGDESGKVIVWGWTF 96

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 36.8 bits (85), Expect = 6e-04
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 166 CPITTHIFDDPVT-LETGQTYERRAIQEWIERGNSSCPITRQKLSS 210
           CPI      +    L     +    I  WI + N +CP+ +  + S
Sbjct: 8   CPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.6 bits (93), Expect = 7e-04
 Identities = 7/97 (7%), Positives = 24/97 (24%), Gaps = 11/97 (11%)

Query: 790 SNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDK-----IFSGHSDGTIKVWTGRGSI 844
           ++ +  S+          +       +L  +                 G +  +  +   
Sbjct: 250 NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT-- 307

Query: 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
               +++ E    +T L +    + +     D     
Sbjct: 308 ----RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYT 340

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 5/56 (8%)

Query: 163 DFVCPITTHIFDDPVTLET-----GQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213
           D  CP          +L+      G T     +     RG  +CP     L  +  
Sbjct: 3   DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.3 bits (78), Expect = 0.003
 Identities = 8/50 (16%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 165 VCPITTHIF-DDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213
           +C I+  +     ++ ++   +E+  ++++++    + PIT + LS  ++
Sbjct: 2   LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEI 50

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.003
 Identities = 8/48 (16%), Positives = 11/48 (22%), Gaps = 4/48 (8%)

Query: 166 CPITTHIFDD----PVTLETGQTYERRAIQEWIERGNSSCPITRQKLS 209
           CP+     +           G    R          N  CP  R+   
Sbjct: 3   CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	897
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.78
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.7
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.7
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.7
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.69
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.65
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.65
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.65
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.64
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.64
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.63
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.63
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.62
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.61
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.61
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.61
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.61
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.59
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.59
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.57
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.57
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.56
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.55
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.55
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.54
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.53
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.47
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.42
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.38
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.36
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.32
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.3
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.26
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.23
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.22
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.22
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.21
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.19
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.12
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.86
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.81
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.78
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.66
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.65
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.64
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.6
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.59
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.59
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.57
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.53
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.49
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.49
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.45
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.29
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.26
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.22
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.21
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.21
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.18
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.15
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.09
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.08
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.08
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.03
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.91
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.83
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.77
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.69
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.68
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.67
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.63
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.59
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.29
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.27
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.01
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	96.99
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	96.75
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	95.94
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	94.28
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	92.89
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	92.54
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	92.14
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	91.9
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	90.09
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	88.33
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	88.18
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	86.24
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	85.68
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	85.0
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	84.16
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	84.13
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	82.32

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=7.5e-18  Score=138.88  Aligned_cols=119  Identities=13%  Similarity=0.096  Sum_probs=99.7

Q ss_pred             CCEEEEEECCCCCEEEEECCCCCEEEEECC--C------CEEECCCCCCCEEEEEEECC--EEEEEECCCE---EEEEEC
Q ss_conf             550673303456089973089976898088--6------40221479985799999099--7999754990---999957
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--E------LVHVDSSENGKVLSIACFRD--KIFSGHSDGT---IKVWTG  840 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~------~~~~l~gH~~~V~sV~fspd--~L~Sgs~Dgt---IkiWdl  840 (897)
                      .......+++++ ++++|+.|++|++||+.  +      ....+.+|...|.+++|+||  +|++|+.|++   |++||+
T Consensus       185 ~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~  263 (393)
T d1sq9a_         185 QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET  263 (393)
T ss_dssp             CCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred             CCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEEECCC
T ss_conf             867899978999-8999938982999860233211000011111242563877004665320112428988421001035


Q ss_pred             CCCCCEEEEEE-------------ECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC-CCEEEECC
Q ss_conf             88852038886-------------036888689999169999999958994999958876-40012034
Q 002641          841 RGSILHLIQQI-------------REHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV  895 (897)
Q Consensus       841 ~~~~~~~i~~l-------------~gH~~~V~slafspdg~~L~SgS~DgtIriWDi~t~-~l~~l~~~  895 (897)
                      .++.  .+..+             .||.+.|++++|+|++++|+|||.|++|++||+.++ ++++|...
T Consensus       264 ~~g~--~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH  330 (393)
T d1sq9a_         264 EFGE--RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH  330 (393)
T ss_dssp             TTCC--EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             CCCE--EEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCC
T ss_conf             3213--444311566664310232023586660013898880698779998999999999799999886

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.70  E-value=9.3e-16  Score=124.11  Aligned_cols=123  Identities=14%  Similarity=0.187  Sum_probs=102.9

Q ss_pred             CCCCEEEEEC--------CCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC--CCEEEC--CCCCCCEEEEEEECC--
Q ss_conf             7773244210--------02343550673303456089973089976898088--640221--479985799999099--
Q 002641          759 RDINIHMKDI--------MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVD--SSENGKVLSIACFRD--  824 (897)
Q Consensus       759 ~d~~~~~~~i--------~~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~~~~l--~gH~~~V~sV~fspd--  824 (897)
                      .+..+.+|+.        ..+|...+....+++++.++++|+.|+.|++|+..  .....+  ..+...|.++.|+|+  
T Consensus       204 ~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  283 (340)
T d1tbga_         204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSC
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf             57369999999994889995788985899997998999999699969997521221111111224457458999989999


Q ss_pred             EEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             79997549909999578885203888603688868999916999999995899499995
Q 002641          825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRS  883 (897)
Q Consensus       825 ~L~Sgs~DgtIkiWdl~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWD  883 (897)
                      ++++|+.||+|++||+.++  .++..+.+|.+.|++++|+|++.+|+|||.||+|++||
T Consensus       284 ~l~~g~~dg~i~iwd~~~~--~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         284 LLLAGYDDFNCNVWDALKA--DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEECCCEEEEEECCCC--CEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf             9999979798999999999--39899848999789999908999999990699799859

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.70  E-value=1.5e-15  Score=122.71  Aligned_cols=120  Identities=18%  Similarity=0.209  Sum_probs=102.7

Q ss_pred             CCCEEEEEECCCCCEEEEECCCCCEEEEECC--CCEEECCCCCCCEEEEEEECC--EEEEEECCCEEEEEECCCCCCEEE
Q ss_conf             3550673303456089973089976898088--640221479985799999099--799975499099995788852038
Q 002641          773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI  848 (897)
Q Consensus       773 ~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~~~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~~~~~~i  848 (897)
                      ...+......+...++++|+.|+.+++||+.  +.+..+.+|.+.|.+++|+|+  ++++|+.||+|++|++....  ..
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~--~~  261 (340)
T d1tbga_         184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--EL  261 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EE
T ss_pred             CEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCC--CC
T ss_conf             0157630012442126876057369999999994889995788985899997998999999699969997521221--11


Q ss_pred             EEE--ECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC-CCEEEEC
Q ss_conf             886--036888689999169999999958994999958876-4001203
Q 002641          849 QQI--REHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ  894 (897)
Q Consensus       849 ~~l--~gH~~~V~slafspdg~~L~SgS~DgtIriWDi~t~-~l~~l~~  894 (897)
                      ..+  ..|...|++++|+|+++++++|+.||+|++||+.++ .+.++..
T Consensus       262 ~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  310 (340)
T d1tbga_         262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG  310 (340)
T ss_dssp             EEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             CCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC
T ss_conf             1111224457458999989999999997979899999999939899848

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.70  E-value=5.4e-16  Score=125.77  Aligned_cols=113  Identities=14%  Similarity=0.129  Sum_probs=63.2

Q ss_pred             CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC--------------------CCEEECCCCCCCEEEEEEECC--EEE
Q ss_conf             2343550673303456089973089976898088--------------------640221479985799999099--799
Q 002641          770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--------------------ELVHVDSSENGKVLSIACFRD--KIF  827 (897)
Q Consensus       770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--------------------~~~~~l~gH~~~V~sV~fspd--~L~  827 (897)
                      .+|...+....+++++.++++|+.|+++++|+..                    .......+|.+.|.+++|+|+  .++
T Consensus       138 ~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  217 (371)
T d1k8kc_         138 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA  217 (371)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred             CCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCC
T ss_conf             01112221111111111100013476799984015764310012211111111011244047667478987512332100


Q ss_pred             EEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf             9754990999957888520388860368886899991699999999589949999588
Q 002641          828 SGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSND  885 (897)
Q Consensus       828 Sgs~DgtIkiWdl~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWDi~  885 (897)
                      +|+.|++|++||+..+  ..+..+.+|...|.+++|+|+++++++|+ |+.+++|+..
T Consensus       218 s~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~  272 (371)
T d1k8kc_         218 WVSHDSTVCLADADKK--MAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYD  272 (371)
T ss_dssp             EEETTTEEEEEEGGGT--TEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEE
T ss_pred             CCCCCCCCEEEEEECC--CCEEEEECCCCCCEEEEECCCCCEEEEEC-CCCEEEEEEE
T ss_conf             0014786058864101--21000001466520365469997999981-9926787760

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.69  E-value=1.6e-15  Score=122.43  Aligned_cols=124  Identities=18%  Similarity=0.189  Sum_probs=104.4

Q ss_pred             CCCCCCCCEEEEEECCCCC-EEEEECCCCCEEEEECC--CCEEECCCCCCCEEEEEEECC--EEEEEECCCEEEEEECCC
Q ss_conf             0023435506733034560-89973089976898088--640221479985799999099--799975499099995788
Q 002641          768 IMKGLRELRKYSPLAFEMV-KVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       768 i~~~~~~~~~~~~~s~d~~-~LaSgs~DgtIklWd~~--~~~~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~  842 (897)
                      .+.+|...+....+++++. .+++|+.|++|++||.+  +....+.+|...|+++.|+|+  ++++|+.|+.|++||...
T Consensus       141 ~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~  220 (311)
T d1nr0a1         141 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD  220 (311)
T ss_dssp             CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             11111111111111211101200011221111111111111111111111111123476422121111111110001244


Q ss_pred             CCCEEEEEE-------ECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC-CCEEEE
Q ss_conf             852038886-------036888689999169999999958994999958876-400120
Q 002641          843 SILHLIQQI-------REHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       843 ~~~~~i~~l-------~gH~~~V~slafspdg~~L~SgS~DgtIriWDi~t~-~l~~l~  893 (897)
                      +.  ....+       .+|.+.|++++|+|++++|++|+.|++|++||++++ ++.++.
T Consensus       221 ~~--~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~  277 (311)
T d1nr0a1         221 GT--KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP  277 (311)
T ss_dssp             CC--EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEE
T ss_conf             64--1122211111110024653210247889999999379969999999996999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=2.2e-15  Score=121.51  Aligned_cols=105  Identities=18%  Similarity=0.144  Sum_probs=61.8

Q ss_pred             EEECCCCCEEEEECCCCCEEEEECCC-----------------CEEECCCCCCCEEEEEEECC--EEEEEECCCEEEEEE
Q ss_conf             33034560899730899768980886-----------------40221479985799999099--799975499099995
Q 002641          779 SPLAFEMVKVLSNGHDSSADFWNHRE-----------------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT  839 (897)
Q Consensus       779 ~~~s~d~~~LaSgs~DgtIklWd~~~-----------------~~~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWd  839 (897)
                      ..++.++..+++++.||.+.+|+...                 ......+|...|.+++|+|+  +|+||+.||+|++||
T Consensus       200 ~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD  279 (342)
T d1yfqa_         200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             EECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             EEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEE
T ss_conf             76369998788654899599998059864011123512565553147776235431599669844799987999899999


Q ss_pred             CCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf             78885203888603688868999916999999995899499995887
Q 002641          840 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDS  886 (897)
Q Consensus       840 l~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWDi~t  886 (897)
                      +.++  +.+..+..+. .+..++|+|+|+.+++|+.|.++++|..-.
T Consensus       280 ~~~~--~~l~~~~~~~-~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~  323 (342)
T d1yfqa_         280 LQTR--KKIKNFAKFN-EDSVVKIACSDNILCLATSDDTFKTNAAID  323 (342)
T ss_dssp             TTTT--EEEEECCCCS-SSEEEEEEECSSEEEEEEECTHHHHCSSSC
T ss_pred             CCCC--CEEEEECCCC-CCEEEEEEECCCEEEEEECCCCEEEEEEEC
T ss_conf             9989--4988705899-987999994799999999199278830127

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=8.8e-15  Score=117.22  Aligned_cols=122  Identities=14%  Similarity=0.092  Sum_probs=74.9

Q ss_pred             CCCCCEEEEEECCCCCEEEEECCCCCEEEEECC------CCEEECCCCCCCEEEEEEECC--EEEEEECCCEEEEEECCC
Q ss_conf             343550673303456089973089976898088------640221479985799999099--799975499099995788
Q 002641          771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       771 ~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~------~~~~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~  842 (897)
                      ++...+....+++++.++++|+.|+++++|++.      .......+|.+.|.+++|+|+  ++++|+.|++|++|+...
T Consensus        93 ~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~  172 (371)
T d1k8kc_          93 RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI  172 (371)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred             CCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEECC
T ss_conf             22110001111111211000002576302544203343311100101112221111111111100013476799984015


Q ss_pred             CC----------------CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC-CCEEE
Q ss_conf             85----------------2038886036888689999169999999958994999958876-40012
Q 002641          843 SI----------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       843 ~~----------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWDi~t~-~l~~l  892 (897)
                      ..                ........+|...|++++|+|+|+.+++++.|++|++||+.++ .+..+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~  239 (371)
T d1k8kc_         173 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL  239 (371)
T ss_dssp             TTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEE
T ss_conf             7643100122111111110112440476674789875123321000014786058864101210000

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.65  E-value=6.7e-15  Score=118.06  Aligned_cols=125  Identities=19%  Similarity=0.190  Sum_probs=92.6

Q ss_pred             CCCCEEEEEC--------CCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC--CCEEE-------CCCCCCCEEEEEE
Q ss_conf             7773244210--------02343550673303456089973089976898088--64022-------1479985799999
Q 002641          759 RDINIHMKDI--------MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHV-------DSSENGKVLSIAC  821 (897)
Q Consensus       759 ~d~~~~~~~i--------~~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~~~~-------l~gH~~~V~sV~f  821 (897)
                      .+..+.+|+.        ..+|...+....+++++.++++++.|+.+++||..  .....       ..+|.+.|++++|
T Consensus       167 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  246 (311)
T d1nr0a1         167 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW  246 (311)
T ss_dssp             TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             22111111111111111111111111112347642212111111111000124464112221111111002465321024


Q ss_pred             ECC--EEEEEECCCEEEEEECCCCCCEEEEEEECCCC-CEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf             099--79997549909999578885203888603688-86899991699999999589949999588
Q 002641          822 FRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK-AVTGLAILQSGEMLYSGSLDKTARVRSND  885 (897)
Q Consensus       822 spd--~L~Sgs~DgtIkiWdl~~~~~~~i~~l~gH~~-~V~slafspdg~~L~SgS~DgtIriWDi~  885 (897)
                      +|+  +|++|+.||+|++||++++  ++++++..|.. ....+.+.++++.+++++.||.|++||..
T Consensus       247 s~~~~~l~tgs~Dg~v~iwd~~t~--~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         247 SPDGTKIASASADKTIKIWNVATL--KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CCCCCEEEEEECCCEEEEEECCCC--CEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEECC
T ss_conf             788999999937996999999999--69999979998633299999519999999899979999588

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=3.7e-15  Score=119.90  Aligned_cols=114  Identities=21%  Similarity=0.286  Sum_probs=95.7

Q ss_pred             CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC--------------CCEEECCCCCCCEEEEEEECC--EEEEEECCC
Q ss_conf             2343550673303456089973089976898088--------------640221479985799999099--799975499
Q 002641          770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--------------ELVHVDSSENGKVLSIACFRD--KIFSGHSDG  833 (897)
Q Consensus       770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--------------~~~~~l~gH~~~V~sV~fspd--~L~Sgs~Dg  833 (897)
                      .+|...+....+++++.++++|+.|+.|++||+.              ........|...|.+++|+|+  ++++|+.||
T Consensus       251 ~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg  330 (388)
T d1erja_         251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR  330 (388)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCC
T ss_conf             57789878999979999999997899289875157764321013444200110124553278999889999999996989


Q ss_pred             EEEEEECCCCCCEEEEEEECCCCCEEEEEE------CCCCCEEEEEECCCCEEEEECC
Q ss_conf             099995788852038886036888689999------1699999999589949999588
Q 002641          834 TIKVWTGRGSILHLIQQIREHTKAVTGLAI------LQSGEMLYSGSLDKTARVRSND  885 (897)
Q Consensus       834 tIkiWdl~~~~~~~i~~l~gH~~~V~slaf------spdg~~L~SgS~DgtIriWDi~  885 (897)
                      +|++||+.++  +++..+++|.+.|+++++      +|++.+|+|||.||+|++|+++
T Consensus       331 ~i~vwd~~~~--~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         331 GVLFWDKKSG--NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEEETTTC--CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEECCCC--CEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEE
T ss_conf             7999999999--6999996889978999984674258999999999189979997621

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.8e-14  Score=114.96  Aligned_cols=122  Identities=16%  Similarity=0.050  Sum_probs=97.4

Q ss_pred             CCCEEEEECCCC-------CCCCEEEEEECCCCCEEEEECCCCCEEEEECC-CCEEECCCCCCCEEEEEEECC--EEEEE
Q ss_conf             773244210023-------43550673303456089973089976898088-640221479985799999099--79997
Q 002641          760 DINIHMKDIMKG-------LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSG  829 (897)
Q Consensus       760 d~~~~~~~i~~~-------~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~~~~l~gH~~~V~sV~fspd--~L~Sg  829 (897)
                      +....+|+...+       +...+....+++++.++++|+.|+.+++||+. ........|.+.|.+++|+|+  ++++|
T Consensus       204 d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~  283 (337)
T d1gxra_         204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVST  283 (337)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEE
T ss_conf             65532111111000002466661579997153030000002564211111111100001245654169998999999999


Q ss_pred             ECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             5499099995788852038886036888689999169999999958994999958
Q 002641          830 HSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSN  884 (897)
Q Consensus       830 s~DgtIkiWdl~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWDi  884 (897)
                      +.||+|++||+.++.  .+..+ +|.+.|++++|+|++++|++||.|++|++||+
T Consensus       284 s~Dg~i~iwd~~~~~--~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         284 GKDNLLNAWRTPYGA--SIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ETTSEEEEEETTTCC--EEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ECCCEEEEEECCCCC--EEEEC-CCCCCEEEEEEECCCCEEEEEECCCEEEEEEE
T ss_conf             489969999899997--99992-69998799999279999999908996999977

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.9e-16  Score=128.91  Aligned_cols=75  Identities=25%  Similarity=0.428  Sum_probs=70.0

Q ss_pred             CCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             9998620334645787960437876331688999994199988988854688899862099999999999959999
Q 002641          159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGG  234 (897)
Q Consensus       159 ~~~~~l~CpIC~~l~~dPV~l~CGhtfCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~~N~~L~~li~~~~~~~~~~  234 (897)
                      ++|++|.||||+++|+|||+++|||+||+.||.+|+..+...||.||+.+....+ .||..|+++|+.|.+.+++.
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l-~pN~~L~~~I~~~l~~~~~~   77 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL-IPNLAMKEVIDAFISENGWV   77 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGC-EECHHHHHHHHHHHTTCSCS
T ss_pred             CCCCCCCCCCCCCHHHHHCCCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCC
T ss_conf             8970011858373234033058868563889999986377657875666542355-51999999999999987784

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.8e-14  Score=113.66  Aligned_cols=122  Identities=13%  Similarity=0.134  Sum_probs=102.3

Q ss_pred             CCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC--CCEEECCCCCCCEEEEEEECC--EEEEEECCCEEEEEECCCC
Q ss_conf             002343550673303456089973089976898088--640221479985799999099--7999754990999957888
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS  843 (897)
Q Consensus       768 i~~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~~~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~~  843 (897)
                      ...+|...+....+++++..+++++.|+.+++||+.  +.+..+ .|.+.|.+++|+|+  .+++|+.|+.+++||++.+
T Consensus       178 ~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~  256 (337)
T d1gxra_         178 QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP  256 (337)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC-CCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCC
T ss_conf             11111111110123444321122356655321111110000024-66661579997153030000002564211111111


Q ss_pred             CCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC-CCEEEE
Q ss_conf             52038886036888689999169999999958994999958876-400120
Q 002641          844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWDi~t~-~l~~l~  893 (897)
                      .   .....+|...|++++|+|+|++|++|+.|++|++||+.++ .+..+.
T Consensus       257 ~---~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~  304 (337)
T d1gxra_         257 D---KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK  304 (337)
T ss_dssp             C---EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             C---CCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECC
T ss_conf             1---00001245654169998999999999489969999899997999926

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=6.2e-15  Score=118.29  Aligned_cols=98  Identities=20%  Similarity=0.328  Sum_probs=85.6

Q ss_pred             CCCEEEEECCCCCEEEEECC--CCEEECCCCCCCEEEEEEECC--EEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEE
Q ss_conf             56089973089976898088--640221479985799999099--79997549909999578885203888603688868
Q 002641          784 EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT  859 (897)
Q Consensus       784 d~~~LaSgs~DgtIklWd~~--~~~~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~~~~~~i~~l~gH~~~V~  859 (897)
                      .+..+++++.|+.|++|+..  +.+..+.+|...|.++.|+|+  +|++|+.||+|++||+.++  +++..+.+|.+.|+
T Consensus       216 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~h~~~V~  293 (317)
T d1vyhc1         216 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK--RCMKTLNAHEHFVT  293 (317)
T ss_dssp             -CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS--CCCEEEECCSSCEE
T ss_pred             CCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC--CEEEEECCCCCCEE
T ss_conf             8861475169978999888999688999688998799998799999999979894999999999--19999928999889


Q ss_pred             EEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             999916999999995899499995
Q 002641          860 GLAILQSGEMLYSGSLDKTARVRS  883 (897)
Q Consensus       860 slafspdg~~L~SgS~DgtIriWD  883 (897)
                      +++|+|++++|++||.|++|++||
T Consensus       294 ~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         294 SLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEECCCCCEEEEEECCCEEEEEC
T ss_conf             999949999999992899499829

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.61  E-value=3.7e-14  Score=112.84  Aligned_cols=111  Identities=12%  Similarity=0.101  Sum_probs=58.1

Q ss_pred             CCCEEEEEECCCCCEEEEECCCCCEEEEECC-----CCEEECCCCCCCEEEEEEECC--EEEEEECCCEEEEEECCCCCC
Q ss_conf             3550673303456089973089976898088-----640221479985799999099--799975499099995788852
Q 002641          773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL  845 (897)
Q Consensus       773 ~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----~~~~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~~~~  845 (897)
                      ...+....+++++.++++++.|+.|++||..     .....+.+|...|.+++|+|+  ++++|+.||+|++||+.++..
T Consensus       179 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         179 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCC
T ss_conf             11111111111111111111111111111111111111111111111111112466645138882899799998999973


Q ss_pred             EEEEEEECCC-CCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             0388860368-88689999169999999958994999958
Q 002641          846 HLIQQIREHT-KAVTGLAILQSGEMLYSGSLDKTARVRSN  884 (897)
Q Consensus       846 ~~i~~l~gH~-~~V~slafspdg~~L~SgS~DgtIriWDi  884 (897)
                      .......+|. ..|+++.| +++..|++||.|++|++||+
T Consensus       259 ~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         259 HPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             CCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEEC
T ss_pred             CEEEEECCCCCCCEEEEEE-CCCCEEEEEECCCEEEEEEC
T ss_conf             1489834898896899997-79899999928997999944

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=9.4e-14  Score=109.97  Aligned_cols=125  Identities=21%  Similarity=0.231  Sum_probs=110.3

Q ss_pred             CCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC--CCEEECCCCCCCEEEEEEECC---------------------
Q ss_conf             002343550673303456089973089976898088--640221479985799999099---------------------
Q 002641          768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---------------------  824 (897)
Q Consensus       768 i~~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~~~~l~gH~~~V~sV~fspd---------------------  824 (897)
                      .+.++........+.+++.++++++.|+.+++|+..  +....+.+|...+.++.|+|+                     
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (317)
T d1vyhc1         138 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG  217 (317)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------C
T ss_pred             EECCCCCCCEEEECCCCCCEEEEEECCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCC
T ss_conf             87167776300001667999999927982999751254034788247787337998632564111034563034302588


Q ss_pred             -EEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC-CCEEEEC
Q ss_conf             -799975499099995788852038886036888689999169999999958994999958876-4001203
Q 002641          825 -KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ  894 (897)
Q Consensus       825 -~L~Sgs~DgtIkiWdl~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWDi~t~-~l~~l~~  894 (897)
                       .+++|+.|++|++|+..++  .++..+.+|...|++++|+|++++|++|+.||+|++||+.++ .+.+|..
T Consensus       218 ~~~~~~~~d~~i~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  287 (317)
T d1vyhc1         218 PFLLSGSRDKTIKMWDVSTG--MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA  287 (317)
T ss_dssp             CEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC
T ss_pred             CEEEECCCCCEEEEEECCCC--CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC
T ss_conf             61475169978999888999--68899968899879999879999999997989499999999919999928

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.61  E-value=3.8e-16  Score=126.83  Aligned_cols=74  Identities=46%  Similarity=0.861  Sum_probs=68.9

Q ss_pred             CCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             999862033464578796043787633168899999419998898885468889986209999999999995999
Q 002641          159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPG  233 (897)
Q Consensus       159 ~~~~~l~CpIC~~l~~dPV~l~CGhtfCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~~N~~L~~li~~~~~~~~~  233 (897)
                      ++|++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|+..+....+ .||..|+++|+.|+++++.
T Consensus         4 eiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l-~pN~~L~~~I~~~~~~~~~   77 (78)
T d1t1ha_           4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL-TPNYVLKSLIALWCESNGI   77 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCC-EECTTTHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCHHHCCEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHCC
T ss_conf             8996279917181210833726777433999999999888878865563775656-2469999999999999586

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=3.2e-14  Score=113.27  Aligned_cols=113  Identities=13%  Similarity=0.143  Sum_probs=97.0

Q ss_pred             CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC---CCEEECCCCCCCEEEEEEECC------------EEEEEECCCE
Q ss_conf             2343550673303456089973089976898088---640221479985799999099------------7999754990
Q 002641          770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD------------KIFSGHSDGT  834 (897)
Q Consensus       770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~~~~l~gH~~~V~sV~fspd------------~L~Sgs~Dgt  834 (897)
                      ..+...+....+++++.++++|+.|+.|++||..   .....+.+|.+.|.+++|+|+            ++++|+.|++
T Consensus       159 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~  238 (287)
T d1pgua2         159 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN  238 (287)
T ss_dssp             SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC
T ss_pred             ECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCE
T ss_conf             02478536999516765211011111100000023321100011111111000001365410012678870276649995


Q ss_pred             EEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             99995788852038886036888689999169999999958994999958
Q 002641          835 IKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSN  884 (897)
Q Consensus       835 IkiWdl~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWDi  884 (897)
                      |++||+..+. ..+..+.+|.+.|++++|+|++ .++++|.|++|++|++
T Consensus       239 i~iw~~~~~~-~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         239 IFIYSVKRPM-KIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEESSCTT-CCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EEEEECCCCC-EEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEEE
T ss_conf             9998889997-5899927878985899998999-8999979992999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=1.2e-13  Score=109.21  Aligned_cols=122  Identities=19%  Similarity=0.226  Sum_probs=100.4

Q ss_pred             CCCEEEEEECCCCCEEEEECCCCCEEEEECC--CCEE-------ECCCCCCCEEEEEEECC--EEEEEECCCEEEEEECC
Q ss_conf             3550673303456089973089976898088--6402-------21479985799999099--79997549909999578
Q 002641          773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVH-------VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR  841 (897)
Q Consensus       773 ~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~~~-------~l~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~  841 (897)
                      ........++.++.++++|+.|+.|++|+..  ....       ...+|.+.|.++.|+|+  ++++|+.|+.|++||+.
T Consensus       205 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~  284 (388)
T d1erja_         205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ  284 (388)
T ss_dssp             SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
T ss_conf             54421123688787589973898199963455730001024433345778987899997999999999789928987515


Q ss_pred             CCC----------CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC-CCEEEEC
Q ss_conf             885----------2038886036888689999169999999958994999958876-4001203
Q 002641          842 GSI----------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ  894 (897)
Q Consensus       842 ~~~----------~~~i~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWDi~t~-~l~~l~~  894 (897)
                      ...          .........|...|++++|+|+|++|++|+.||+|++||+.++ .+.+|..
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~  348 (388)
T d1erja_         285 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG  348 (388)
T ss_dssp             --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC
T ss_conf             7764321013444200110124553278999889999999996989799999999969999968

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=2.7e-14  Score=113.75  Aligned_cols=113  Identities=17%  Similarity=0.225  Sum_probs=78.7

Q ss_pred             CCCCEEEEEECCCCCEEEEECCCCCEEEEECC--CCEEECCCCCCCEEEEEEECCEEEEEECCCEEEEEECCCCCCEEEE
Q ss_conf             43550673303456089973089976898088--6402214799857999990997999754990999957888520388
Q 002641          772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQ  849 (897)
Q Consensus       772 ~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~~~~l~gH~~~V~sV~fspd~L~Sgs~DgtIkiWdl~~~~~~~i~  849 (897)
                      +........+++++.++++++.|++|++|+..  ..+..+.+|.+.|.++.|+++.+++|+.||+|++||+.+..    .
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~  275 (355)
T d1nexb2         200 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS----R  275 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCC----E
T ss_pred             CCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC----E
T ss_conf             123321111112100210124563687630122111111111111111112321003332011111111111111----0


Q ss_pred             EEECCCCCEEEEE-ECCCCCEEEEEECCCCEEEEECCCC-CC
Q ss_conf             8603688868999-9169999999958994999958876-40
Q 002641          850 QIREHTKAVTGLA-ILQSGEMLYSGSLDKTARVRSNDSF-TY  889 (897)
Q Consensus       850 ~l~gH~~~V~sla-fspdg~~L~SgS~DgtIriWDi~t~-~l  889 (897)
                      .+.+|...+.++. |+++++++++|+ |++|++||++++ .+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         276 KFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV  316 (355)
T ss_dssp             EEEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBC
T ss_pred             ECCCCCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEE
T ss_conf             00124688229999849998999980-997999999999798

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=5.6e-14  Score=111.58  Aligned_cols=123  Identities=15%  Similarity=0.192  Sum_probs=91.8

Q ss_pred             CCCCCCCEEEEEECCCCC-EEEEECCCCCEEEEECC--C---CEEECCCCCCCEEEEEEECC---EEEEEECCCEEEEEE
Q ss_conf             023435506733034560-89973089976898088--6---40221479985799999099---799975499099995
Q 002641          769 MKGLRELRKYSPLAFEMV-KVLSNGHDSSADFWNHR--E---LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWT  839 (897)
Q Consensus       769 ~~~~~~~~~~~~~s~d~~-~LaSgs~DgtIklWd~~--~---~~~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIkiWd  839 (897)
                      ..+|...+....+.+++. .+++++.|+.+++|+..  +   ....+.+|...|++++|+|+   ++++|+.|+.|++||
T Consensus       155 ~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd  234 (325)
T d1pgua1         155 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD  234 (325)
T ss_dssp             CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred             EEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEE
T ss_conf             20012343211112343206888621112211112211000000001577775277630345310000112332101343


Q ss_pred             CCCCCCEEEEEEECCCCCEEEEEEC---CCCCEEEEEECCCCEEEEECCCC-CCEEEE
Q ss_conf             7888520388860368886899991---69999999958994999958876-400120
Q 002641          840 GRGSILHLIQQIREHTKAVTGLAIL---QSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       840 l~~~~~~~i~~l~gH~~~V~slafs---pdg~~L~SgS~DgtIriWDi~t~-~l~~l~  893 (897)
                      ++++  +.+..+.+|...+.++.|+   |+|++|++++.|++|++||+.++ .+..+.
T Consensus       235 ~~~~--~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~  290 (325)
T d1pgua1         235 GKSG--EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT  290 (325)
T ss_dssp             TTTC--CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ECCC--CCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE
T ss_conf             0012--2211111111111110000003689999999589939999999997889999

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.2e-13  Score=106.27  Aligned_cols=102  Identities=17%  Similarity=0.268  Sum_probs=54.8

Q ss_pred             CCCCCEEEEECCCCCEEEEECC--CCEEECC---CCCCCEEEEEEECCEEEEEECCCEEEEEECCCCCCEEEEEEE----
Q ss_conf             3456089973089976898088--6402214---799857999990997999754990999957888520388860----
Q 002641          782 AFEMVKVLSNGHDSSADFWNHR--ELVHVDS---SENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIR----  852 (897)
Q Consensus       782 s~d~~~LaSgs~DgtIklWd~~--~~~~~l~---gH~~~V~sV~fspd~L~Sgs~DgtIkiWdl~~~~~~~i~~l~----  852 (897)
                      +.++.++++|+.|++|++||..  +....+.   .|...+.++.++++++++|+.||+|++||++++  +.++.+.    
T Consensus       224 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg--~~i~~~~~~~~  301 (342)
T d2ovrb2         224 ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG--EFIRNLVTLES  301 (342)
T ss_dssp             EEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTC--CEEEEEEECTT
T ss_pred             ECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCCCCCEEEEECCCCEEEEEECCCC--CEEEEEECCCC
T ss_conf             0689999997489889998655442211122100011010000137984499908998999999999--79899862347


Q ss_pred             -CCCCCEEEEEECCCCCEEEEEECCCC----EEEEECC
Q ss_conf             -36888689999169999999958994----9999588
Q 002641          853 -EHTKAVTGLAILQSGEMLYSGSLDKT----ARVRSND  885 (897)
Q Consensus       853 -gH~~~V~slafspdg~~L~SgS~Dgt----IriWDi~  885 (897)
                       +|.+.|++++|+|++..+++|+.||+    +++||..
T Consensus       302 ~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         302 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECC
T ss_conf             89889789999879998999996899970489999389

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.1e-14  Score=116.48  Aligned_cols=74  Identities=24%  Similarity=0.442  Sum_probs=66.9

Q ss_pred             CCCCCCCCCCCCCCCCCCEECCCC-CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             999862033464578796043787-6331688999994199988988854688899862099999999999959999
Q 002641          159 TPPKDFVCPITTHIFDDPVTLETG-QTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGG  234 (897)
Q Consensus       159 ~~~~~l~CpIC~~l~~dPV~l~CG-htfCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~~N~~L~~li~~~~~~~~~~  234 (897)
                      ++|++|.||||+++|.|||+++|| |+||+.||.+|+.. +..||.|++++....+ .||..|+++|+.|++.+...
T Consensus        18 ~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~~~~L-~pN~~Lr~~I~~~~~~~~~~   92 (98)
T d1wgma_          18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQI-RPNTELKEKIQRWLAERKQQ   92 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTS-EECHHHHHHHHHHHHHSTTC
T ss_pred             CCCHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCCHHH-CCHHHHHHHHHHHHHHHHHH
T ss_conf             990774886734688777762355320149999999870-6876655566640112-01399999999999999873

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=2.4e-13  Score=107.13  Aligned_cols=125  Identities=15%  Similarity=0.234  Sum_probs=94.6

Q ss_pred             CCCCCCEEEEEC--------------CCCCCCCEEEEEECCCCCEEEEECCCCC---EEEEECC--CCEEEC--------
Q ss_conf             877773244210--------------0234355067330345608997308997---6898088--640221--------
Q 002641          757 GLRDINIHMKDI--------------MKGLRELRKYSPLAFEMVKVLSNGHDSS---ADFWNHR--ELVHVD--------  809 (897)
Q Consensus       757 ~~~d~~~~~~~i--------------~~~~~~~~~~~~~s~d~~~LaSgs~Dgt---IklWd~~--~~~~~l--------  809 (897)
                      +..|.++++|+.              +.+|...+....+++++.+|++|+.|++   |++||+.  +.+..+        
T Consensus       201 gs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~  280 (393)
T d1sq9a_         201 GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ  280 (393)
T ss_dssp             ECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----
T ss_pred             EECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCC
T ss_conf             93898299986023321100001111124256387700466532011242898842100103532134443115666643


Q ss_pred             -----CCCCCCEEEEEEECC--EEEEEECCCEEEEEECCCCCCEEEEEEECCCCCE---------------------EEE
Q ss_conf             -----479985799999099--7999754990999957888520388860368886---------------------899
Q 002641          810 -----SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAV---------------------TGL  861 (897)
Q Consensus       810 -----~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~~~~~~i~~l~gH~~~V---------------------~sl  861 (897)
                           .+|.+.|++++|+||  +|+|||.|++|++||+.++  +++.++++|.+.|                     +++
T Consensus       281 ~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g--~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~  358 (393)
T d1sq9a_         281 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK--ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV  358 (393)
T ss_dssp             ---CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred             CEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCC--CEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCEE
T ss_conf             10232023586660013898880698779998999999999--7999998868761377348999999999998312469


Q ss_pred             EECCCC----------CEEEEEECCCCEEEEE
Q ss_conf             991699----------9999995899499995
Q 002641          862 AILQSG----------EMLYSGSLDKTARVRS  883 (897)
Q Consensus       862 afspdg----------~~L~SgS~DgtIriWD  883 (897)
                      .|.+.+          +.+++++.|+.||+|.
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         359 KFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             EEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             EECCCCCEECCCCCCCCEEEEEECCCEEEEEE
T ss_conf             98866766312368899799999199089990

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.55  E-value=1.4e-13  Score=108.66  Aligned_cols=114  Identities=15%  Similarity=0.118  Sum_probs=96.5

Q ss_pred             CCEEEEEECCCCCEEEEECCCCCEEEEECC--CCE-EECCCCCCCEEEEEEECC--EEEEEECCCEEEEEECCCCC-CEE
Q ss_conf             550673303456089973089976898088--640-221479985799999099--79997549909999578885-203
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELV-HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-LHL  847 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~~-~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~~~-~~~  847 (897)
                      .......+++++.++++|+.|+.+++||+.  +.. .....|...|.+++|+|+  ++++|+.|+.|++||+.++. ...
T Consensus       137 ~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  216 (299)
T d1nr0a2         137 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH  216 (299)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             12332211111111111111111111111111111111111111111111111111111111111111111111111111


Q ss_pred             EEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf             8886036888689999169999999958994999958876
Q 002641          848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       848 i~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWDi~t~  887 (897)
                      ...+.+|...|++++|+|++.++++|+.|++|++||++++
T Consensus       217 ~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         217 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCC
T ss_conf             1111111111111124666451388828997999989999

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.2e-13  Score=103.33  Aligned_cols=102  Identities=25%  Similarity=0.304  Sum_probs=81.6

Q ss_pred             EECCCCCEEEEECCCCCEEEEECC--CCEEECCCCCCCEEEEEEECCEEEEEECCCEEEEEECCCCC-------CEEEEE
Q ss_conf             303456089973089976898088--64022147998579999909979997549909999578885-------203888
Q 002641          780 PLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI-------LHLIQQ  850 (897)
Q Consensus       780 ~~s~d~~~LaSgs~DgtIklWd~~--~~~~~l~gH~~~V~sV~fspd~L~Sgs~DgtIkiWdl~~~~-------~~~i~~  850 (897)
                      ..+.++..+++++.|++|++||+.  ..+..+.+|...+.+..+....+++|+.||+|++||+....       ...+..
T Consensus       183 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  262 (293)
T d1p22a2         183 CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT  262 (293)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEE
T ss_pred             CCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEE
T ss_conf             21689875887658998999866556146652143100000145410799986799799998888864445677545578


Q ss_pred             EECCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             603688868999916999999995899499995
Q 002641          851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVRS  883 (897)
Q Consensus       851 l~gH~~~V~slafspdg~~L~SgS~DgtIriWD  883 (897)
                      +.+|.+.|++++|+  +++|+|||.|++|++||
T Consensus       263 ~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         263 LVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             ECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             ECCCCCCEEEEEEC--CCEEEEEECCCEEEEEC
T ss_conf             45889988999971--99999992299899959

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.5e-13  Score=105.97  Aligned_cols=113  Identities=20%  Similarity=0.329  Sum_probs=94.6

Q ss_pred             EEEEECCCCCEEEEECCCCCEEEEECC--CCEEECCCCCCCEEEEEEECCEEEEEECCCEEEEEECCCCCCEEEEEEEC-
Q ss_conf             673303456089973089976898088--64022147998579999909979997549909999578885203888603-
Q 002641          777 KYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIRE-  853 (897)
Q Consensus       777 ~~~~~s~d~~~LaSgs~DgtIklWd~~--~~~~~l~gH~~~V~sV~fspd~L~Sgs~DgtIkiWdl~~~~~~~i~~l~g-  853 (897)
                      .......++.++++|+.|++|++||..  +.+..+.+|...+.++.++++++++|+.|++|++||.....  ....+.+ 
T Consensus       179 ~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~  256 (342)
T d2ovrb2         179 RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ--CLQTLQGP  256 (342)
T ss_dssp             CEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCC--EEEEECST
T ss_pred             CCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCEEEEEECCCCC--CCCCCCCC
T ss_conf             4210068999999995899399952556536567416653205770689999997489889998655442--21112210


Q ss_pred             --CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC-CCEEEE
Q ss_conf             --6888689999169999999958994999958876-400120
Q 002641          854 --HTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       854 --H~~~V~slafspdg~~L~SgS~DgtIriWDi~t~-~l~~l~  893 (897)
                        |...+.++.|+  ++++++|+.||+|++||++++ .+..+.
T Consensus       257 ~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~  297 (342)
T d2ovrb2         257 NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLV  297 (342)
T ss_dssp             TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEECEEECCCC--CCEEEEECCCCEEEEEECCCCCEEEEEE
T ss_conf             0011010000137--9844999089989999999997989986

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=3.1e-12  Score=99.30  Aligned_cols=113  Identities=16%  Similarity=0.202  Sum_probs=84.9

Q ss_pred             CCCCCCEEEEEECCC-CCEEEEECCCCCEEEEECC--CCEEECCCCCCCEE----EEEEECC-EEEEEECCCEEEEEECC
Q ss_conf             234355067330345-6089973089976898088--64022147998579----9999099-79997549909999578
Q 002641          770 KGLRELRKYSPLAFE-MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVL----SIACFRD-KIFSGHSDGTIKVWTGR  841 (897)
Q Consensus       770 ~~~~~~~~~~~~s~d-~~~LaSgs~DgtIklWd~~--~~~~~l~gH~~~V~----sV~fspd-~L~Sgs~DgtIkiWdl~  841 (897)
                      .++...+....++++ +.++++++.|+.|++||..  +.+..+.+|...+.    ++.|.+. +|++|+.|++|++||+.
T Consensus       202 ~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~  281 (325)
T d1pgua1         202 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT  281 (325)
T ss_dssp             SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred             CCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf             57777527763034531000011233210134300122211111111111110000003689999999589939999999


Q ss_pred             CCCCEEEEEEECCCCC--EEEEEECCC-CCEEEEEECCCCEEEEEC
Q ss_conf             8852038886036888--689999169-999999958994999958
Q 002641          842 GSILHLIQQIREHTKA--VTGLAILQS-GEMLYSGSLDKTARVRSN  884 (897)
Q Consensus       842 ~~~~~~i~~l~gH~~~--V~slafspd-g~~L~SgS~DgtIriWDi  884 (897)
                      ++  +++..+..|...  +..+++.+. +..+++||.|++|++||+
T Consensus       282 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         282 TS--KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TT--EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CC--CEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf             99--788999954874067699999889999999979999999979

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=1.2e-12  Score=102.21  Aligned_cols=111  Identities=14%  Similarity=0.177  Sum_probs=83.9

Q ss_pred             CCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEECCCCCCCEEEEEE-ECC-EEEEEECCCEEEEEECCCCCCE
Q ss_conf             02343550673303456089973089976898088640221479985799999-099-7999754990999957888520
Q 002641          769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIAC-FRD-KIFSGHSDGTIKVWTGRGSILH  846 (897)
Q Consensus       769 ~~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~~~~~l~gH~~~V~sV~f-spd-~L~Sgs~DgtIkiWdl~~~~~~  846 (897)
                      +.+|...+....+  ++.++++|+.|++|++||+......+..|...+.++.+ +++ .+++++.|++|++||+++++  
T Consensus       239 ~~~h~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~--  314 (355)
T d1nexb2         239 LQGHTALVGLLRL--SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGK--  314 (355)
T ss_dssp             ECCCSSCCCEEEE--CSSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCC--
T ss_pred             CCCCCCCCCCCCC--CCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCC--
T ss_conf             1111111111123--210033320111111111111110001246882299998499989999809979999999997--


Q ss_pred             EE-EEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             38-886036888689999169999999958994999958
Q 002641          847 LI-QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSN  884 (897)
Q Consensus       847 ~i-~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWDi  884 (897)
                      ++ ..+.+|.+.|++++|+|+ ..+++++.||++.+|.+
T Consensus       315 ~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         315 LVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             BCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             EEEEEECCCCCCEEEEEECCC-EEEEEEECCCCEEEEEE
T ss_conf             988884589998999998399-19999989890999999

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.7e-12  Score=98.75  Aligned_cols=103  Identities=20%  Similarity=0.320  Sum_probs=89.0

Q ss_pred             ECCCCCEEEEECCCCCEEEEECC--CCEEECCCCCCCEEEEEEECCEEEEEECCCEEEEEECCCCCCEEEEEEECCCCCE
Q ss_conf             03456089973089976898088--6402214799857999990997999754990999957888520388860368886
Q 002641          781 LAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAV  858 (897)
Q Consensus       781 ~s~d~~~LaSgs~DgtIklWd~~--~~~~~l~gH~~~V~sV~fspd~L~Sgs~DgtIkiWdl~~~~~~~i~~l~gH~~~V  858 (897)
                      .......+++++.|+.+++||..  +.+..+.+|...+..+.++++.+++++.|++|++||+++.  ..+..+.+|...+
T Consensus       144 ~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v  221 (293)
T d1p22a2         144 VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG--ACLRVLEGHEELV  221 (293)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTC--CEEEEECCCSSCE
T ss_pred             CEECCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCC--EEEEEECCCCEEE
T ss_conf             00000220110699860410078883889971554453221689875887658998999866556--1466521431000


Q ss_pred             EEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf             89999169999999958994999958876
Q 002641          859 TGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       859 ~slafspdg~~L~SgS~DgtIriWDi~t~  887 (897)
                      .+  +++++..+++|+.|++|++||+.+.
T Consensus       222 ~~--~~~~~~~l~sg~~dg~i~iwd~~~~  248 (293)
T d1p22a2         222 RC--IRFDNKRIVSGAYDGKIKVWDLVAA  248 (293)
T ss_dssp             EE--EECCSSEEEEEETTSCEEEEEHHHH
T ss_pred             EE--CCCCCEEEEEECCCCEEEEEECCCC
T ss_conf             00--1454107999867997999988888

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=3e-11  Score=92.30  Aligned_cols=109  Identities=14%  Similarity=0.116  Sum_probs=86.7

Q ss_pred             EEEECCCCCEEEEECCC-CCEEEEECC--CCEE-ECCCCCCCEEEEEEECC--EEEEEECCCEEEEEECCCCCCEEEEEE
Q ss_conf             73303456089973089-976898088--6402-21479985799999099--799975499099995788852038886
Q 002641          778 YSPLAFEMVKVLSNGHD-SSADFWNHR--ELVH-VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI  851 (897)
Q Consensus       778 ~~~~s~d~~~LaSgs~D-gtIklWd~~--~~~~-~l~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~~~~~~i~~l  851 (897)
                      ...+++++..++.++.| +.+++|+..  .... ....|.+.+++++|+|+  +|++|+.||.|++||+.++. .....+
T Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~  201 (287)
T d1pgua2         123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-VKTSRW  201 (287)
T ss_dssp             EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEECCS
T ss_pred             EEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCC-CCCCCC
T ss_conf             3565214751110002210002100012210001210247853699951676521101111110000002332-110001


Q ss_pred             ECCCCCEEEEEECCC----------CCEEEEEECCCCEEEEECCCC
Q ss_conf             036888689999169----------999999958994999958876
Q 002641          852 REHTKAVTGLAILQS----------GEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       852 ~gH~~~V~slafspd----------g~~L~SgS~DgtIriWDi~t~  887 (897)
                      .+|...|++++|+|+          +.++++||.|++|++||++.+
T Consensus       202 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~  247 (287)
T d1pgua2         202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP  247 (287)
T ss_dssp             CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCC
T ss_conf             1111111000001365410012678870276649995999888999

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.3e-13  Score=106.18  Aligned_cols=71  Identities=15%  Similarity=0.413  Sum_probs=61.7

Q ss_pred             CCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             999862033464578796043787633168899999419--998898885468889986209999999999995
Q 002641          159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERG--NSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQ  230 (897)
Q Consensus       159 ~~~~~l~CpIC~~l~~dPV~l~CGhtfCr~CI~~~~~~~--~~~CP~Cr~~~~~~~~~~~N~~L~~li~~~~~~  230 (897)
                      .+.+.|.||||+++|.+||+++|||+||+.||.+|+...  ...||.||..+....+ ++|..++++++.+++.
T Consensus        17 ~l~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l-~~n~~l~~~ve~l~~~   89 (103)
T d1jm7a_          17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL-QESTRFSQLVEELLKI   89 (103)
T ss_dssp             HHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC-BCCCSSSHHHHHHHHH
T ss_pred             HCCCCCCCCCCCCHHCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHC-CCCHHHHHHHHHHHHH
T ss_conf             663584997218231891883799864167899999977999809698883875528-7578999999999998

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.30  E-value=1.4e-10  Score=87.69  Aligned_cols=113  Identities=7%  Similarity=-0.056  Sum_probs=76.0

Q ss_pred             CCEEEEEECCCCCEEEEECCCCCEEEEECCC---------CEEECC----------------------------------
Q ss_conf             5506733034560899730899768980886---------402214----------------------------------
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHRE---------LVHVDS----------------------------------  810 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~---------~~~~l~----------------------------------  810 (897)
                      .......+++++.+|++++.|+.+.+|+...         ......                                  
T Consensus       179 ~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  258 (360)
T d1k32a3         179 SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSP  258 (360)
T ss_dssp             SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEE
T ss_pred             CCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCEEECCCCCCEEE
T ss_conf             22110012577999999959985575333544023203641179852469601206877767155311365266540010


Q ss_pred             --CCCCCEEEEEEECC---------------EEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf             --79985799999099---------------7999754990999957888520388860368886899991699999999
Q 002641          811 --SENGKVLSIACFRD---------------KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSG  873 (897)
Q Consensus       811 --gH~~~V~sV~fspd---------------~L~Sgs~DgtIkiWdl~~~~~~~i~~l~gH~~~V~slafspdg~~L~Sg  873 (897)
                        ...+....+...++               ++++++.|+.+++||+.+++   ...   |.+.|.+++|+|||++|+++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~---~~~~v~~~~~SpDG~~l~~~  332 (360)
T d1k32a3         259 INVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---VTE---VKNNLTDLRLSADRKTVMVR  332 (360)
T ss_dssp             CSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC---EEE---EEEEEEEEEECTTSCEEEEE
T ss_pred             CCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCE---EEE---ECCCCCEEEECCCCCEEEEE
T ss_conf             124767526754138985699997359970699964899879999799974---988---64886879999989899999


Q ss_pred             ECCCCEEEEECCCC-CCEEE
Q ss_conf             58994999958876-40012
Q 002641          874 SLDKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       874 S~DgtIriWDi~t~-~l~~l  892 (897)
                      +.||+|++||+.++ ...++
T Consensus       333 ~~Dg~i~v~d~~~~~~~~~~  352 (360)
T d1k32a3         333 KDDGKIYTFPLEKPEDERTV  352 (360)
T ss_dssp             ETTSCEEEEESSCTTSCEEC
T ss_pred             ECCCEEEEEECCCCCCCEEE
T ss_conf             78994999999999854599

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=2.5e-12  Score=99.93  Aligned_cols=67  Identities=24%  Similarity=0.325  Sum_probs=56.2

Q ss_pred             CCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             9998620334645787960437876331688999994199988988854688899862099999999
Q 002641          159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIA  225 (897)
Q Consensus       159 ~~~~~l~CpIC~~l~~dPV~l~CGhtfCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~~N~~L~~li~  225 (897)
                      ++.+++.||||.++|.+||+++|||+||+.||.+|++.+...||.||.++....+..|...+.+++.
T Consensus        19 d~~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l~   85 (86)
T d1rmda2          19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILN   85 (86)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHH
T ss_pred             HHCCCCCCCCCCCCHHCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHC
T ss_conf             3056759956784441555267887631999999996487907036997996663598999999861

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.23  E-value=9.2e-11  Score=88.89  Aligned_cols=104  Identities=15%  Similarity=0.127  Sum_probs=77.7

Q ss_pred             EEEECCCCCEEEEECC---------CCEEECCCCCCCEEEEEEECC--EEE-------EEECCCEEEEEECCCCCCEEEE
Q ss_conf             9973089976898088---------640221479985799999099--799-------9754990999957888520388
Q 002641          788 VLSNGHDSSADFWNHR---------ELVHVDSSENGKVLSIACFRD--KIF-------SGHSDGTIKVWTGRGSILHLIQ  849 (897)
Q Consensus       788 LaSgs~DgtIklWd~~---------~~~~~l~gH~~~V~sV~fspd--~L~-------Sgs~DgtIkiWdl~~~~~~~i~  849 (897)
                      .++.+.|+.+.+|+..         +....+.+|...+.+++|+||  +++       +++.|++|++||+.++.  ...
T Consensus       269 ~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~--~~~  346 (426)
T d1hzua2         269 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD--AKY  346 (426)
T ss_dssp             EEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTT--SCC
T ss_pred             EECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCC--CCE
T ss_conf             741578965988522566520330258689866887636787489986188850679880228879999898787--670


Q ss_pred             EE---------ECCCCCEEEEEECCCCCEEE-EE----ECCCCEEEEECCCC-CCEEEE
Q ss_conf             86---------03688868999916999999-99----58994999958876-400120
Q 002641          850 QI---------REHTKAVTGLAILQSGEMLY-SG----SLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       850 ~l---------~gH~~~V~slafspdg~~L~-Sg----S~DgtIriWDi~t~-~l~~l~  893 (897)
                      ++         ..|.+.|..++|+|||++++ |+    +.|++|++||.+++ ...++.
T Consensus       347 ~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~  405 (426)
T d1hzua2         347 QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  405 (426)
T ss_dssp             EEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             EEECCCHHCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEEC
T ss_conf             89502110256778851898799999999999972488889829999999873899987

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.22  E-value=2.3e-10  Score=86.07  Aligned_cols=115  Identities=10%  Similarity=0.033  Sum_probs=73.1

Q ss_pred             CCCCCEEEEEECCCCCEEEEECCCC--CEEEEECC-CCEEECCCCCCCEEEEEEECC--EEEEEECCCEEEEEECCCCCC
Q ss_conf             3435506733034560899730899--76898088-640221479985799999099--799975499099995788852
Q 002641          771 GLRELRKYSPLAFEMVKVLSNGHDS--SADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL  845 (897)
Q Consensus       771 ~~~~~~~~~~~s~d~~~LaSgs~Dg--tIklWd~~-~~~~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~~~~  845 (897)
                      +|...+....+++|+++|++++.+.  .+++||.. .....+..|.+.|.+++|+||  ++++++.|+.+++|+..++  
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~--  117 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG--  117 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC--
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCC--
T ss_conf             699988889998999999999928998999998999948875089712774121145432100011111000001222--


Q ss_pred             EEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCCEEEEECCCC
Q ss_conf             03888603688868999916999999995----------8994999958876
Q 002641          846 HLIQQIREHTKAVTGLAILQSGEMLYSGS----------LDKTARVRSNDSF  887 (897)
Q Consensus       846 ~~i~~l~gH~~~V~slafspdg~~L~SgS----------~DgtIriWDi~t~  887 (897)
                      .....+..|...+.+++|+|+|++|+.++          .++.+++||+.++
T Consensus       118 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~  169 (360)
T d1k32a3         118 KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  169 (360)
T ss_dssp             CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             CEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCCEEEECCCCC
T ss_conf             1000000135520230121322566521233121100025654266304557

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=1.1e-10  Score=88.48  Aligned_cols=115  Identities=10%  Similarity=0.062  Sum_probs=82.6

Q ss_pred             EECCCCCEEEEECCCCCEEEEECC-----CCEEECCCCCCCEEEEEEECC---EEEEEECCCEEEEEECCCCCC------
Q ss_conf             303456089973089976898088-----640221479985799999099---799975499099995788852------
Q 002641          780 PLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSIL------  845 (897)
Q Consensus       780 ~~s~d~~~LaSgs~DgtIklWd~~-----~~~~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIkiWdl~~~~~------  845 (897)
                      ........+++++.|+.|++|++.     ........+...+.+..+.+.   .+++++.||.+.+|+......      
T Consensus       155 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~  234 (342)
T d1yfqa_         155 TMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK  234 (342)
T ss_dssp             EEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred             EEECCCCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCC
T ss_conf             00016870246517984788760567634111210254221014676369998788654899599998059864011123


Q ss_pred             -E------EEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC-CCEEEEC
Q ss_conf             -0------38886036888689999169999999958994999958876-4001203
Q 002641          846 -H------LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ  894 (897)
Q Consensus       846 -~------~i~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWDi~t~-~l~~l~~  894 (897)
                       .      ......+|...|++++|+|++.+|+||+.||+|++||+.++ .+..+..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~  291 (342)
T d1yfqa_         235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             CCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf             512565553147776235431599669844799987999899999998949887058

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.21  E-value=1.2e-10  Score=87.97  Aligned_cols=109  Identities=14%  Similarity=0.006  Sum_probs=64.5

Q ss_pred             EEEEEECCCCCEEEEECCCCCEEEEECCCCEEECCCCCCCEEEEEE-ECCEEEEEECCCEEEEEECCCCCCEEEEEEECC
Q ss_conf             0673303456089973089976898088640221479985799999-099799975499099995788852038886036
Q 002641          776 RKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIAC-FRDKIFSGHSDGTIKVWTGRGSILHLIQQIREH  854 (897)
Q Consensus       776 ~~~~~~s~d~~~LaSgs~DgtIklWd~~~~~~~l~gH~~~V~sV~f-spd~L~Sgs~DgtIkiWdl~~~~~~~i~~l~gH  854 (897)
                      +....+++++..+++++.+.+.++|+..    .+..|.....++++ ....+++++.|+++++|++.++.     .+.+|
T Consensus       296 v~~~~~~~~g~~~~~~s~p~~~~lw~~~----~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~-----~l~~~  366 (432)
T d1qksa2         296 ILDSFPALGGGSLFIKTHPNSQYLYVDA----TLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA-----GITEG  366 (432)
T ss_dssp             EEEEEECSCSCCCCEECCTTCSEEEEEC----TTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH-----TCCSS
T ss_pred             EEEEEECCCCCEEEEEECCCCCCEEECC----CCCCCCCEEEEEEEEECHHHCCCCCCCCEEECCCCCCC-----CCCCC
T ss_conf             7799886899768887268864102112----67888770359999962461045567844863343444-----45789


Q ss_pred             CCCEEEEEECCCCCEEEEEE-----CCCCEEEEECCCC-CCEEEE
Q ss_conf             88868999916999999995-----8994999958876-400120
Q 002641          855 TKAVTGLAILQSGEMLYSGS-----LDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       855 ~~~V~slafspdg~~L~SgS-----~DgtIriWDi~t~-~l~~l~  893 (897)
                      .+.|..++|+|||++++.++     .|+.|++||.+++ ...+++
T Consensus       367 ~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~  411 (432)
T d1qksa2         367 QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  411 (432)
T ss_dssp             CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEEC
T ss_conf             986897679899999999970488888868999999955886846

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.6e-12  Score=99.82  Aligned_cols=69  Identities=22%  Similarity=0.339  Sum_probs=61.0

Q ss_pred             CCCCCCCCCCCCCCCCCCEEC-CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             999862033464578796043-7876331688999994199988988854688899862099999999999959
Q 002641          159 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQN  231 (897)
Q Consensus       159 ~~~~~l~CpIC~~l~~dPV~l-~CGhtfCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~~N~~L~~li~~~~~~~  231 (897)
                      .+++++.||||.++|.+||++ +|||+||+.||.+|+..   .||.||..+....+ .+|..|+++|+.++..+
T Consensus        18 ~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~~~~l-~~n~~l~~lv~~~~~~~   87 (97)
T d1jm7b_          18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQDL-KINRQLDSMIQLCSKLR   87 (97)
T ss_dssp             HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCSCSSC-CCCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCCCHHHCCCEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCHHHC-CCCHHHHHHHHHHHHHH
T ss_conf             621228992587221127465889993029999999853---66622786765518-60589999999999999

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.12  E-value=1.3e-10  Score=87.78  Aligned_cols=42  Identities=7%  Similarity=0.139  Sum_probs=24.6

Q ss_pred             EEEEEEECCCCCEEEEEECCCCCEEE-------EEECCCCEEEEECCCC
Q ss_conf             03888603688868999916999999-------9958994999958876
Q 002641          846 HLIQQIREHTKAVTGLAILQSGEMLY-------SGSLDKTARVRSNDSF  887 (897)
Q Consensus       846 ~~i~~l~gH~~~V~slafspdg~~L~-------SgS~DgtIriWDi~t~  887 (897)
                      +....+.+|...+..++|+|+|++++       +++.|+++++||+.++
T Consensus       294 ~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~  342 (426)
T d1hzua2         294 KKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL  342 (426)
T ss_dssp             SEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred             EEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCC
T ss_conf             5868986688763678748998618885067988022887999989878

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=9.7e-10  Score=81.69  Aligned_cols=52  Identities=19%  Similarity=0.307  Sum_probs=45.8

Q ss_pred             CCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             6203346457879604378763316889999941999889888546888998
Q 002641          163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP  214 (897)
Q Consensus       163 ~l~CpIC~~l~~dPV~l~CGhtfCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~  214 (897)
                      ...||||++.+.+|++++|||.||+.||.+|+..+...||.||..+.....+
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i   74 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI   74 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCCS
T ss_pred             CCCCCCCCCCCCCEEEECCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCEE
T ss_conf             8999358976899699589993529999999997858189979586477666

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.86  E-value=4.3e-08  Score=70.12  Aligned_cols=111  Identities=9%  Similarity=-0.041  Sum_probs=53.4

Q ss_pred             CEEEEEECCCCCEEEEECCCCCEEEEECC--C--C---EEECCCCCCCEEEEEEECC---EEEEEECCCEEEEEECCCCC
Q ss_conf             50673303456089973089976898088--6--4---0221479985799999099---79997549909999578885
Q 002641          775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--E--L---VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI  844 (897)
Q Consensus       775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~--~---~~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIkiWdl~~~~  844 (897)
                      .+....+++||+++++++.|+++++||+.  +  .   +....+|.+.+++..|+||   ++++++.|++|++||..++.
T Consensus        63 ~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~  142 (432)
T d1qksa2          63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE  142 (432)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred             CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCC
T ss_conf             71379988999999998289997899810898128899844889877698432188888899981789827999076554


Q ss_pred             CEEEEEEECC-----------CCCEEEEEECCCCCEE-EEEECCCCEEEEECCCC
Q ss_conf             2038886036-----------8886899991699999-99958994999958876
Q 002641          845 LHLIQQIREH-----------TKAVTGLAILQSGEML-YSGSLDKTARVRSNDSF  887 (897)
Q Consensus       845 ~~~i~~l~gH-----------~~~V~slafspdg~~L-~SgS~DgtIriWDi~t~  887 (897)
                        ++..+.+|           ......+.++|+|..+ ++.+.++++.+||..+.
T Consensus       143 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~  195 (432)
T d1qksa2         143 --PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL  195 (432)
T ss_dssp             --EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred             --CEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCC
T ss_conf             --22540247764352201688850589987899989999816882999984378

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=7.7e-10  Score=82.38  Aligned_cols=52  Identities=19%  Similarity=0.437  Sum_probs=45.9

Q ss_pred             CCCCCCCCCCCCCEEC-CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2033464578796043-78763316889999941999889888546888998620
Q 002641          164 FVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTN  217 (897)
Q Consensus       164 l~CpIC~~l~~dPV~l-~CGhtfCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~~N  217 (897)
                      +.||||+++|+|||.+ .|||+||+.||.+|+.+. ..||.||+++..++++ |.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~-~~CP~c~~~l~~~dLi-pi   53 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIV-EI   53 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCE-EC
T ss_pred             CCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHC-CCCCCCCCCCCHHHCE-EC
T ss_conf             99936785688657457899845599999987603-6798547818877536-47

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.78  E-value=9.6e-08  Score=67.61  Aligned_cols=106  Identities=9%  Similarity=-0.025  Sum_probs=80.9

Q ss_pred             CCCEEEEECCCCCEEEEECC---CCEEECCCCCCCEEEEEEECC--EEEEEECCCEEEEEECCCCCCEEEEEEECCCCCE
Q ss_conf             56089973089976898088---640221479985799999099--7999754990999957888520388860368886
Q 002641          784 EMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAV  858 (897)
Q Consensus       784 d~~~LaSgs~DgtIklWd~~---~~~~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~~~~~~i~~l~gH~~~V  858 (897)
                      ....+.++..+..+.+|+..   ........|...+.++.++++  .++.+. ++.|++||..++  +.+..+. +...+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~--~~~~~~~-~~~~~  294 (346)
T d1jmxb_         219 DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR--KLIKAAN-LDHTY  294 (346)
T ss_dssp             -----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT--EEEEEEE-CSSCC
T ss_pred             CCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEEC-CCEEEEEECCCC--CEEEEEC-CCCCE
T ss_conf             7325754047834999977788368787631566068889717997899942-983899989999--3999974-99977


Q ss_pred             EEEEECCCCCEEEEEECCCCEEEEECCCC-CCEEEE
Q ss_conf             89999169999999958994999958876-400120
Q 002641          859 TGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       859 ~slafspdg~~L~SgS~DgtIriWDi~t~-~l~~l~  893 (897)
                      .+++|+|||+++++++.|++|++||..++ .+.++.
T Consensus       295 ~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         295 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE
T ss_conf             899996899999999489929999996587979998

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.66  E-value=3.2e-06  Score=56.86  Aligned_cols=114  Identities=15%  Similarity=0.103  Sum_probs=79.4

Q ss_pred             EEEEEECCCCCEEEEECCC-CCEEEEECC--CCEEECCCCCCCEEEEEEECC--EEEEE---ECCCEEEEEECCCCCCEE
Q ss_conf             0673303456089973089-976898088--640221479985799999099--79997---549909999578885203
Q 002641          776 RKYSPLAFEMVKVLSNGHD-SSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSG---HSDGTIKVWTGRGSILHL  847 (897)
Q Consensus       776 ~~~~~~s~d~~~LaSgs~D-gtIklWd~~--~~~~~l~gH~~~V~sV~fspd--~L~Sg---s~DgtIkiWdl~~~~~~~  847 (897)
                      .....+.+++..+++++.+ +.+.+|+..  ...... .....+..+.|+++  .++.+   ..+++|++||..++  +.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~--~~  236 (301)
T d1l0qa2         160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN--KI  236 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT--EE
T ss_pred             CEEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEECC-CCCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCC--EE
T ss_conf             4288860465401310121111111111100011101-33577503110111101111002100002323656998--19


Q ss_pred             EEEEECCCCCEEEEEECCCCCEE-EEEECCCCEEEEECCCC-CCEEEE
Q ss_conf             88860368886899991699999-99958994999958876-400120
Q 002641          848 IQQIREHTKAVTGLAILQSGEML-YSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       848 i~~l~gH~~~V~slafspdg~~L-~SgS~DgtIriWDi~t~-~l~~l~  893 (897)
                      +..+.. ...+++++|+|||+++ ++++.|++|++||+.++ .+.++.
T Consensus       237 ~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         237 TARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEECC-CCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEE
T ss_conf             999848-99877999918989999998999969999999995999996

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.65  E-value=2.3e-07  Score=64.93  Aligned_cols=101  Identities=7%  Similarity=0.012  Sum_probs=74.6

Q ss_pred             EEEECCCCCEEEEECC--C-CEEECCCCCCCEEEEEEECC--EEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEE
Q ss_conf             9973089976898088--6-40221479985799999099--79997549909999578885203888603688868999
Q 002641          788 VLSNGHDSSADFWNHR--E-LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLA  862 (897)
Q Consensus       788 LaSgs~DgtIklWd~~--~-~~~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~~~~~~i~~l~gH~~~V~sla  862 (897)
                      ...++.++.+.+|+..  . ....+..+...+....++++  +++  +.|+.|++||+.++  +.+..+. +...+.+++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~d~~~~--~~~~~~~-~~~~~~~~~  286 (337)
T d1pbyb_         212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF--GAYNVLESFDLEKN--ASIKRVP-LPHSYYSVN  286 (337)
T ss_dssp             TSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEE--EEESEEEEEETTTT--EEEEEEE-CSSCCCEEE
T ss_pred             EEECCCCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCEEEE--ECCCCEEEEECCCC--CEEEEEC-CCCCEEEEE
T ss_conf             454036761799986888588898328875058887426613999--73552899989889--6999974-899889999


Q ss_pred             ECCCCCEEEEEECCCCEEEEECCCC-CCEEEE
Q ss_conf             9169999999958994999958876-400120
Q 002641          863 ILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI  893 (897)
Q Consensus       863 fspdg~~L~SgS~DgtIriWDi~t~-~l~~l~  893 (897)
                      |+|||+++++++.|++|++||..+. .+..+.
T Consensus       287 ~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         287 VSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             ECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             ECCCCCEEEEEECCCCEEEEECCCCCEEEEEE
T ss_conf             97899999999499929999999876989998

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.7e-05  Score=51.71  Aligned_cols=279  Identities=13%  Similarity=0.132  Sum_probs=136.4

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCC----CHHHHHHHHHHC
Q ss_conf             2100208999999999851489478999999999840100778888551232288999999409----268999999709
Q 002641          306 QIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLR  381 (897)
Q Consensus       306 h~~l~~~~a~~~~ke~L~~sl~~~vlk~av~~l~el~s~~~~~~~~i~~~~~~~~~i~~llk~g----~~ea~~LL~~L~  381 (897)
                      |.+...+.++..+...|....+.++.+.+...+..+- .+...+..+.+. +.+..++.+++.+    ...|...|..|.
T Consensus        52 ~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~-g~i~~Li~lL~~~~~~v~~~a~~aL~~l~  129 (529)
T d1jdha_          52 HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLL  129 (529)
T ss_dssp             HHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-TSHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-CCCHHHHHHHHC-CCHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             9998713399999999847999999999999999995-891669999987-98999999857979899999999999865


Q ss_pred             CCH----HHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCC
Q ss_conf             982----5678875399999999830101123105850368999975513773211110001121412189999842000
Q 002641          382 PST----RTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAE  457 (897)
Q Consensus       382 ~~~----~~i~~~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~  457 (897)
                      ...    +.+...+.+|.|+..|..++..      ....|+.+ +..+....     ..++..+...|+++.|+..+..+
T Consensus       130 ~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~------~~~~a~~~-L~~l~~~~-----~~~~~~~~~~~~~~~L~~ll~~~  197 (529)
T d1jdha_         130 LHQEGAKMAVRLAGGLQKMVALLNKTNVK------FLAITTDC-LQILAYGN-----QESKLIILASGGPQALVNIMRTY  197 (529)
T ss_dssp             HHCTTHHHHHHHHTHHHHHHHGGGCCCHH------HHHHHHHH-HHHHHTTC-----HHHHHHHHHTTHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHCCCCHHHHHHHHCCCHH------HHHHHHHH-HHHHHHHH-----HHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             13201136787658814899988705768------88888999-98876300-----47888887605636899999861


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCC
Q ss_conf             19999999999753012467411367621231358999842174035889999999883000133699999863168631
Q 002641          458 WAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYS  537 (897)
Q Consensus       458 ~~~~~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~g~~~  537 (897)
                      +.+.-...+.-++.++..+..++..+.+...+.+++.++...+...+..++..+..+....+....           ...
T Consensus       198 ~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~-----------~~~  266 (529)
T d1jdha_         198 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG-----------MEG  266 (529)
T ss_dssp             CCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSC-----------CHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHH-----------HHH
T ss_conf             048999999998751101332330456543334699986254015553015677750432110256-----------640


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Q ss_conf             24689999973176775058878776532028543451479999999998312-8964899999999884065
Q 002641          538 SMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRN-SDYPAAQLAAAKTIVSLQG  609 (897)
Q Consensus       538 ~m~~l~~~l~~~~~~~~~~~a~lllqld~l~~~~~~s~~reea~~~~~~~l~~-~~~~~~q~~~~~~l~~l~g  609 (897)
                      ....|...+....++-+-.++..|-.|=.-.+..+.-+.+...+..++..+.. ++.+.+|..++.+|.+|..
T Consensus       267 ~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~  339 (529)
T d1jdha_         267 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  339 (529)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             CCHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
T ss_conf             1014454124542889999999887501220378888887500789999998400111378899988500220

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=3.9e-07  Score=63.36  Aligned_cols=113  Identities=13%  Similarity=0.095  Sum_probs=70.7

Q ss_pred             EEEEECCCCCEEE-EECCCCCEEEEECC---CCE---EECC------CCCCCEEEEEEECC---EEEEEECCCEEEEEEC
Q ss_conf             6733034560899-73089976898088---640---2214------79985799999099---7999754990999957
Q 002641          777 KYSPLAFEMVKVL-SNGHDSSADFWNHR---ELV---HVDS------SENGKVLSIACFRD---KIFSGHSDGTIKVWTG  840 (897)
Q Consensus       777 ~~~~~s~d~~~La-Sgs~DgtIklWd~~---~~~---~~l~------gH~~~V~sV~fspd---~L~Sgs~DgtIkiWdl  840 (897)
                      ....+++++.++. +....+...+|+..   ...   ....      ........+.++++   .++++..++++.+|++
T Consensus       180 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~  259 (333)
T d1ri6a_         180 RHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSV  259 (333)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CEEEEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEEE
T ss_conf             27999602014786204667217885103555202100223430687765531268995156720550456882787887


Q ss_pred             CCCC-CEEEEEEECCCCCEEEEEECCCCCEEEEEE-CCCCEEEEEC--CCCCC
Q ss_conf             8885-203888603688868999916999999995-8994999958--87640
Q 002641          841 RGSI-LHLIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVRSN--DSFTY  889 (897)
Q Consensus       841 ~~~~-~~~i~~l~gH~~~V~slafspdg~~L~SgS-~DgtIriWDi--~t~~l  889 (897)
                      .... .........+...+..++|+|||++++.++ .+++|++|++  .+|.+
T Consensus       260 ~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         260 SEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             CTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             CCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCE
T ss_conf             39997899999967899762899907989999998899939999997999968

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.2e-08  Score=74.12  Aligned_cols=52  Identities=19%  Similarity=0.296  Sum_probs=43.1

Q ss_pred             CCCCCCCCCCCCCCC-----EECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             862033464578796-----0437876331688999994199988988854688899
Q 002641          162 KDFVCPITTHIFDDP-----VTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL  213 (897)
Q Consensus       162 ~~l~CpIC~~l~~dP-----V~l~CGhtfCr~CI~~~~~~~~~~CP~Cr~~~~~~~~  213 (897)
                      ++..||||++.+..+     ++++|||+||..||.+|+..+...||.||+.+....+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             989987088260039956798476372764889999857081979999868130454

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.59  E-value=1.8e-06  Score=58.58  Aligned_cols=114  Identities=18%  Similarity=0.174  Sum_probs=65.0

Q ss_pred             CEEEEEECCCCCEE-EEECCCCCEEEEECC--CCEEECCCCCCCEEEEEEECC--EEEEEE-CCCEEEEEECCCCCCEEE
Q ss_conf             50673303456089-973089976898088--640221479985799999099--799975-499099995788852038
Q 002641          775 LRKYSPLAFEMVKV-LSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGH-SDGTIKVWTGRGSILHLI  848 (897)
Q Consensus       775 ~~~~~~~s~d~~~L-aSgs~DgtIklWd~~--~~~~~l~gH~~~V~sV~fspd--~L~Sgs-~DgtIkiWdl~~~~~~~i  848 (897)
                      ......+++++..+ ++++.++.+.+|+..  .....+ .+...+..+.++|+  .+++++ .++.+.+|+....  ...
T Consensus       117 ~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  193 (301)
T d1l0qa2         117 SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV-SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN--SVI  193 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEC-CCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCE--EEE
T ss_conf             42378760589715542011110011000146303531-567884288860465401310121111111111100--011


Q ss_pred             EEEECCCCCEEEEEECCCCCEEEEEEC---CCCEEEEECCCC-CCEEE
Q ss_conf             886036888689999169999999958---994999958876-40012
Q 002641          849 QQIREHTKAVTGLAILQSGEMLYSGSL---DKTARVRSNDSF-TYAIF  892 (897)
Q Consensus       849 ~~l~gH~~~V~slafspdg~~L~SgS~---DgtIriWDi~t~-~l~~l  892 (897)
                      ..+.. ...+..++|++++..++.++.   ++++.+||..++ ....+
T Consensus       194 ~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~  240 (301)
T d1l0qa2         194 DTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI  240 (301)
T ss_dssp             EEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred             ECCCC-CCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEE
T ss_conf             10133-577503110111101111002100002323656998199998

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.1e-06  Score=58.24  Aligned_cols=268  Identities=12%  Similarity=0.086  Sum_probs=150.3

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCC-----CHHHHHHHHHHCCCHHH--
Q ss_conf             99999999851489478999999999840100778888551232288999999409-----26899999970998256--
Q 002641          314 VINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG-----LLEAVVLIDLLRPSTRT--  386 (897)
Q Consensus       314 a~~~~ke~L~~sl~~~vlk~av~~l~el~s~~~~~~~~i~~~~~~~~~i~~llk~g-----~~ea~~LL~~L~~~~~~--  386 (897)
                      ++..+.+.|. +-+..+.+.+...+.++. .++..+..+.+.......++.+++..     ...|...|..|...+..  
T Consensus        18 aip~L~~lL~-~~~~~v~~~A~~~l~~l~-~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~   95 (529)
T d1jdha_          18 AIPELTKLLN-DEDQVVVNKAAVMVHQLS-KKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL   95 (529)
T ss_dssp             HHHHHHHHHT-CSCHHHHHHHHHHHHHHH-TSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHC-CCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             9999999872-999999999999999998-45577899987133999999998479999999999999999958916699


Q ss_pred             -HHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             -7887539999999983010112310585036899997551377321111000112141218999984200019999999
Q 002641          387 -LIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAA  465 (897)
Q Consensus       387 -i~~~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~  465 (897)
                       +.+.+.+|.|+..|+.++++      ....|+ ..|..+....+.     .+..+...|+++.|+..++.++.+.+..+
T Consensus        96 ~i~~~g~i~~Li~lL~~~~~~------v~~~a~-~aL~~l~~~~~~-----~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a  163 (529)
T d1jdha_          96 AIFKSGGIPALVKMLGSPVDS------VLFYAI-TTLHNLLLHQEG-----AKMAVRLAGGLQKMVALLNKTNVKFLAIT  163 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHH------HHHHHH-HHHHHHHHHCTT-----HHHHHHHHTHHHHHHHGGGCCCHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHCCCCHH------HHHHHH-HHHHHHHCCCCH-----HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             999879899999985797989------999999-999986513201-----13678765881489998870576888888


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             99975301246741136762123135899984217-40358899999998830001336999998631686312468999
Q 002641          466 VGILLRCMQEDGKCRNSIADKAELAPVMESFMAAS-DGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLV  544 (897)
Q Consensus       466 ~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~-~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~g~~~~m~~l~~  544 (897)
                      +..|......+..++..+.+...+.+++.++.... ...+..+...+.-+..-. ..     -..+.+.|.   ...|..
T Consensus       164 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~-~~-----~~~~~~~g~---~~~L~~  234 (529)
T d1jdha_         164 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SN-----KPAIVEAGG---MQALGL  234 (529)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-TH-----HHHHHHTTH---HHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CC-----CCHHHHHHH---HHHHHH
T ss_conf             999988763004788888760563689999986104899999999875110133-23-----304565433---346999


Q ss_pred             HHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf             9973176775058878776532028543451479999999998312896489999999988406
Q 002641          545 YLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQ  608 (897)
Q Consensus       545 ~l~~~~~~~~~~~a~lllqld~l~~~~~~s~~reea~~~~~~~l~~~~~~~~q~~~~~~l~~l~  608 (897)
                      .++...++-+.-++..|-.+   .+...........++.++.-+... ...++..++.+|.+|.
T Consensus       235 ll~~~~~~~~~~a~~~l~~l---s~~~~~~~~~~~~i~~Lv~ll~~~-~~~~~~~a~~~L~~l~  294 (529)
T d1jdha_         235 HLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLT  294 (529)
T ss_dssp             TTTSSCHHHHHHHHHHHHHH---HTTCTTCSCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHT
T ss_pred             HHCCCCHHHHHHHHHHHHHC---CCCCCCHHHHHHCCHHHHHHCCCC-CHHHHHHHHHHHHHHC
T ss_conf             86254015553015677750---432110256640101445412454-2889999999887501

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.53  E-value=3.5e-07  Score=63.68  Aligned_cols=81  Identities=10%  Similarity=0.071  Sum_probs=56.0

Q ss_pred             CCCEEEEEECCCCCEEEEECCCCCEEEEECC--CCEEECCCCCCCEEEEEEECC--EEEEEECCCEEEEEECCCCCCEEE
Q ss_conf             3550673303456089973089976898088--640221479985799999099--799975499099995788852038
Q 002641          773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI  848 (897)
Q Consensus       773 ~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~~~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~~~~~~i  848 (897)
                      .........++++.+++... ++.+.+||..  +.+..+. +...+++++|+||  ++++++.|+.|++||+.+.  +.+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~--~~i  326 (346)
T d1jmxb_         251 TELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL--EKV  326 (346)
T ss_dssp             SSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT--EEE
T ss_pred             CCEEEEEEEECCCCEEEEEC-CCEEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC--CEE
T ss_conf             66068889717997899942-9838999899993999974-9997789999689999999948992999999658--797


Q ss_pred             EEEECCCCC
Q ss_conf             886036888
Q 002641          849 QQIREHTKA  857 (897)
Q Consensus       849 ~~l~gH~~~  857 (897)
                      ..++.+.+.
T Consensus       327 ~~i~~p~g~  335 (346)
T d1jmxb_         327 KNIKLPGGD  335 (346)
T ss_dssp             EEEECSSSC
T ss_pred             EEEECCCCC
T ss_conf             999889998

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.49  E-value=5.1e-07  Score=62.50  Aligned_cols=75  Identities=7%  Similarity=0.045  Sum_probs=52.4

Q ss_pred             CCEEEEEECCCCCEEEEECCCCCEEEEECC--CCEEECCCCCCCEEEEEEECC--EEEEEECCCEEEEEECCCCCCEEEE
Q ss_conf             550673303456089973089976898088--640221479985799999099--7999754990999957888520388
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ  849 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~~~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~~~~~~i~  849 (897)
                      .......+.+++.+++.+  ++.+++||..  +.+..+ .+...+.+++|+||  .+++++.|++|++||..+.  +.+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~--~~v~  315 (337)
T d1pbyb_         241 VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL--EKKG  315 (337)
T ss_dssp             SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC--CEEE
T ss_pred             CCEEEEEECCCCEEEEEC--CCCEEEEECCCCCEEEEE-CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC--CEEE
T ss_conf             505888742661399973--552899989889699997-48998899999789999999949992999999987--6989


Q ss_pred             EEEC
Q ss_conf             8603
Q 002641          850 QIRE  853 (897)
Q Consensus       850 ~l~g  853 (897)
                      .++-
T Consensus       316 ~i~~  319 (337)
T d1pbyb_         316 QVDL  319 (337)
T ss_dssp             EEEC
T ss_pred             EEEC
T ss_conf             9988

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.4e-08  Score=73.55  Aligned_cols=48  Identities=15%  Similarity=0.142  Sum_probs=41.7

Q ss_pred             CCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             8620334645787960437876331688999994199988988854688899
Q 002641          162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL  213 (897)
Q Consensus       162 ~~l~CpIC~~l~~dPV~l~CGhtfCr~CI~~~~~~~~~~CP~Cr~~~~~~~~  213 (897)
                      +.+.|+||++.+.+|++++|||+||+.||.+    ....||.||+.++....
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~----~~~~CP~Cr~~~~~~~~   52 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCPICQAPWPLGAD   52 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS----SSSSCSSCCSSSSCCSS
T ss_pred             CCCCCCCCCCCCCCCEEECCCCHHHHHHHHC----CCCCCCCCCCCCCCCCC
T ss_conf             7889840294158978901777785998872----97968497996669989

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.45  E-value=5.8e-08  Score=69.19  Aligned_cols=43  Identities=23%  Similarity=0.509  Sum_probs=38.4

Q ss_pred             CCCCCCCCCCCEE-CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             3346457879604-3787633168899999419998898885468
Q 002641          166 CPITTHIFDDPVT-LETGQTYERRAIQEWIERGNSSCPITRQKLS  209 (897)
Q Consensus       166 CpIC~~l~~dPV~-l~CGhtfCr~CI~~~~~~~~~~CP~Cr~~~~  209 (897)
                      ||||++.+.+|++ ++|||+||..||.+|++. ...||.||+.+.
T Consensus         8 C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~   51 (68)
T d1chca_           8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE   51 (68)
T ss_dssp             CSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred             CCCCCCCCCCCCEEECCCCCCCHHHHHHHHHH-CCCCCCCCCCHH
T ss_conf             94499396688388289991768999999982-990888781637

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=5e-07  Score=62.60  Aligned_cols=52  Identities=10%  Similarity=0.164  Sum_probs=40.3

Q ss_pred             CCCCCCCCCCCCCCCC------------------EECCCCCCCCHHHHHHHHHCC----CCCCCCCCCCCCCCC
Q ss_conf             9862033464578796------------------043787633168899999419----998898885468889
Q 002641          161 PKDFVCPITTHIFDDP------------------VTLETGQTYERRAIQEWIERG----NSSCPITRQKLSSTK  212 (897)
Q Consensus       161 ~~~l~CpIC~~l~~dP------------------V~l~CGhtfCr~CI~~~~~~~----~~~CP~Cr~~~~~~~  212 (897)
                      +.+-.|+||++-|.++                  ..++|||.||..||..|+...    ..+||.||..+....
T Consensus        23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~   96 (114)
T d1v87a_          23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT   96 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred             CCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCC
T ss_conf             65653453010001344433543334545543468799999056999999999667578976655012206676

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.26  E-value=1.3e-06  Score=59.77  Aligned_cols=114  Identities=10%  Similarity=0.067  Sum_probs=76.9

Q ss_pred             EEEECCCCCEEEEECCCCCEEEEECC-C---CEEECCCCC----------CCEEEEEEECC--EEEEEECC---------
Q ss_conf             73303456089973089976898088-6---402214799----------85799999099--79997549---------
Q 002641          778 YSPLAFEMVKVLSNGHDSSADFWNHR-E---LVHVDSSEN----------GKVLSIACFRD--KIFSGHSD---------  832 (897)
Q Consensus       778 ~~~~s~d~~~LaSgs~DgtIklWd~~-~---~~~~l~gH~----------~~V~sV~fspd--~L~Sgs~D---------  832 (897)
                      ......++..++.++.++.+.+|+.. .   .+....++.          .....+.++++  .++..+.+         
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  278 (355)
T d2bbkh_         199 HPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA  278 (355)
T ss_dssp             CCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred             ECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCC
T ss_conf             02153899738874699829999658990799844578441268543303510899980799767887406871265179


Q ss_pred             -CEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCC--EEEEEECCCCEEEEECCCC-CCEEEEC
Q ss_conf             -909999578885203888603688868999916999--9999958994999958876-4001203
Q 002641          833 -GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE--MLYSGSLDKTARVRSNDSF-TYAIFIQ  894 (897)
Q Consensus       833 -gtIkiWdl~~~~~~~i~~l~gH~~~V~slafspdg~--~L~SgS~DgtIriWDi~t~-~l~~l~~  894 (897)
                       ..|.+||..++  +.+..+.. ...+.+++|+|||+  .+++++.|++|++||.+++ .+..+..
T Consensus       279 ~~~v~v~d~~t~--~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~  341 (355)
T d2bbkh_         279 SRFVVVLDAKTG--ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  341 (355)
T ss_dssp             EEEEEEEETTTC--CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             CCEEEEEECCCC--CEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEEC
T ss_conf             975999867888--49899668-9987799992899969999978999899999999989999928

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.22  E-value=1e-05  Score=53.29  Aligned_cols=116  Identities=8%  Similarity=0.008  Sum_probs=70.7

Q ss_pred             EECCCCCEEEEECCCCCEEEEEC--C-CCEEECCCCCCCEEEE-EEECC-EEEEEECC-C---EEEEEECC--CC-CCEE
Q ss_conf             30345608997308997689808--8-6402214799857999-99099-79997549-9---09999578--88-5203
Q 002641          780 PLAFEMVKVLSNGHDSSADFWNH--R-ELVHVDSSENGKVLSI-ACFRD-KIFSGHSD-G---TIKVWTGR--GS-ILHL  847 (897)
Q Consensus       780 ~~s~d~~~LaSgs~DgtIklWd~--~-~~~~~l~gH~~~V~sV-~fspd-~L~Sgs~D-g---tIkiWdl~--~~-~~~~  847 (897)
                      ....++..+..+..|+...+|.+  . .....+..+...|..+ .++++ .++++..+ .   .-++|.+.  .+ ..++
T Consensus       327 ~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~  406 (470)
T d2bgra1         327 TLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTC  406 (470)
T ss_dssp             CTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEE
T ss_pred             EECCCCCEEEEECCCCCCEEEEEECCCCCEEEECCCCEEEEEEEEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEE
T ss_conf             42378847987436757645999526873045116980487878977999999995689983517999998889986057


Q ss_pred             E-EEEECCCCCEEEEEECCCCCEEE---EEECCCCEEEEECCCC-CCEEEECC
Q ss_conf             8-88603688868999916999999---9958994999958876-40012034
Q 002641          848 I-QQIREHTKAVTGLAILQSGEMLY---SGSLDKTARVRSNDSF-TYAIFIQV  895 (897)
Q Consensus       848 i-~~l~gH~~~V~slafspdg~~L~---SgS~DgtIriWDi~t~-~l~~l~~~  895 (897)
                      + ..+.+|...+++++|||||++++   +|..+-.+++|+..++ .+..|...
T Consensus       407 lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~n  459 (470)
T d2bgra1         407 LSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDN  459 (470)
T ss_dssp             SSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEECC
T ss_pred             ECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC
T ss_conf             03543588898799999989999999832899981999998999899998063

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.21  E-value=5.4e-05  Score=48.24  Aligned_cols=106  Identities=8%  Similarity=-0.044  Sum_probs=70.8

Q ss_pred             CEEEEECCCCCEEEEECC----CCEEECCCCCCC----------EEEEEEECC------------EEEEEECCCEEEEEE
Q ss_conf             089973089976898088----640221479985----------799999099------------799975499099995
Q 002641          786 VKVLSNGHDSSADFWNHR----ELVHVDSSENGK----------VLSIACFRD------------KIFSGHSDGTIKVWT  839 (897)
Q Consensus       786 ~~LaSgs~DgtIklWd~~----~~~~~l~gH~~~----------V~sV~fspd------------~L~Sgs~DgtIkiWd  839 (897)
                      ..++..+.++++.+|+..    ........+...          ...+.++++            .+++...++.+.+||
T Consensus       225 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d  304 (373)
T d2madh_         225 GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT  304 (373)
T ss_pred             CEEEEECCCCEEEEEECCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEE
T ss_conf             42999258965999976899078977630564757866413674133577149975999548882478625898699998


Q ss_pred             CCCCCCEEEEEEECCCCCEEEEEECCCCCE--EEEEECCCCEEEEECCCC-CCEEEEC
Q ss_conf             788852038886036888689999169999--999958994999958876-4001203
Q 002641          840 GRGSILHLIQQIREHTKAVTGLAILQSGEM--LYSGSLDKTARVRSNDSF-TYAIFIQ  894 (897)
Q Consensus       840 l~~~~~~~i~~l~gH~~~V~slafspdg~~--L~SgS~DgtIriWDi~t~-~l~~l~~  894 (897)
                      ..++  +.+..+. +...+..++|+|||+.  +++++.|++|++||+.++ .+..+..
T Consensus       305 ~~t~--~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~  359 (373)
T d2madh_         305 GLVG--QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVE  359 (373)
T ss_pred             CCCC--CEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf             9999--6989866-89982589999899989999967999299999999989999888

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=1.1e-05  Score=53.13  Aligned_cols=112  Identities=9%  Similarity=0.007  Sum_probs=51.9

Q ss_pred             EEEEEECCCCCEE-EEECCCCCEEEEECC--CCEEEC---CCCCCCEEEEEEECC--EEEEEE-CCCEEEEEECCCCCCE
Q ss_conf             0673303456089-973089976898088--640221---479985799999099--799975-4990999957888520
Q 002641          776 RKYSPLAFEMVKV-LSNGHDSSADFWNHR--ELVHVD---SSENGKVLSIACFRD--KIFSGH-SDGTIKVWTGRGSILH  846 (897)
Q Consensus       776 ~~~~~~s~d~~~L-aSgs~DgtIklWd~~--~~~~~l---~gH~~~V~sV~fspd--~L~Sgs-~DgtIkiWdl~~~~~~  846 (897)
                      +....+++|+++| ++++.|+.|.+|++.  .....+   ..+...+..++|+||  ++++++ .+++|.+|+.......
T Consensus        39 v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~  118 (333)
T d1ri6a_          39 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV  118 (333)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE
T ss_pred             EEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCEEEECCCCCCCE
T ss_conf             86899958979999997789969999996898707985301369985499995999887420568883022001110000


Q ss_pred             EEEEEECCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCC
Q ss_conf             3888603688868999916999999995-8994999958876
Q 002641          847 LIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVRSNDSF  887 (897)
Q Consensus       847 ~i~~l~gH~~~V~slafspdg~~L~SgS-~DgtIriWDi~t~  887 (897)
                      .......+...++++.|+|+++.++.++ .+..+.+|+....
T Consensus       119 ~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_         119 GVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD  160 (333)
T ss_dssp             EEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             ECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCC
T ss_conf             001003778531498863010131025655420568973268

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=5.4e-07  Score=62.33  Aligned_cols=47  Identities=17%  Similarity=0.255  Sum_probs=39.1

Q ss_pred             CCCCCCCCCCCC----CEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             203346457879----60437876331688999994199988988854688
Q 002641          164 FVCPITTHIFDD----PVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS  210 (897)
Q Consensus       164 l~CpIC~~l~~d----PV~l~CGhtfCr~CI~~~~~~~~~~CP~Cr~~~~~  210 (897)
                      +-||||++.|.+    ++.++|||+||+.||.+|++.+...||.||+++..
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCCCCCCHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             999587823518982598669977045589999996648989865794889

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=0.00024  Score=43.65  Aligned_cols=117  Identities=7%  Similarity=0.149  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             75399999999830101123105850368999975513773211110001121412189999842000199999999997
Q 002641          390 MDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGIL  469 (897)
Q Consensus       390 ~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~il  469 (897)
                      .+.+|.|+..|....++      .-+..|++.|..+...++     .+...+...||++.|+..+++++.+.+..++.+|
T Consensus       100 ~~~i~~Lv~lL~~~~~~------~v~~~a~~aL~~l~~~~~-----~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L  168 (264)
T d1xqra1         100 LGALRKLLRLLDRDACD------TVRVKALFAISCLVREQE-----AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLL  168 (264)
T ss_dssp             TTHHHHHHHHHHHCSCH------HHHHHHHHHHHHHHTTCH-----HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCH------HHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             27637999996049989------999999999998742440-----2678998720126889988058657889999999


Q ss_pred             HHHCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             530124674113676212313589998421740358899999998830
Q 002641          470 LRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKL  517 (897)
Q Consensus       470 ~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~~~  517 (897)
                      ......+..-+..+.+...+..+++++...+...+..++..|..|...
T Consensus       169 ~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~  216 (264)
T d1xqra1         169 QNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  216 (264)
T ss_dssp             HHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf             998744577888888764689999997399989999999999999864

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.09  E-value=2.6e-05  Score=50.50  Aligned_cols=43  Identities=9%  Similarity=0.078  Sum_probs=27.2

Q ss_pred             CCCCCCCEEEEEEECC--EEE---EEECCCEEEEEECCCCCCEEEEEEEC
Q ss_conf             1479985799999099--799---97549909999578885203888603
Q 002641          809 DSSENGKVLSIACFRD--KIF---SGHSDGTIKVWTGRGSILHLIQQIRE  853 (897)
Q Consensus       809 l~gH~~~V~sV~fspd--~L~---Sgs~DgtIkiWdl~~~~~~~i~~l~g  853 (897)
                      +.+|...+.++.||||  +++   +|..+..+++|+..++  +.+..+..
T Consensus       411 ~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g--~~v~~le~  458 (470)
T d2bgra1         411 LNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND--KGLRVLED  458 (470)
T ss_dssp             TSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT--EEEEEEEC
T ss_pred             CCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC--CEEEEEEC
T ss_conf             3588898799999989999999832899981999998999--89999806

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.08  E-value=1.1e-06  Score=60.23  Aligned_cols=48  Identities=19%  Similarity=0.519  Sum_probs=39.7

Q ss_pred             CCCCCCCCCCCCCCCCC---EEC-CCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             99862033464578796---043-78763316889999941999889888546
Q 002641          160 PPKDFVCPITTHIFDDP---VTL-ETGQTYERRAIQEWIERGNSSCPITRQKL  208 (897)
Q Consensus       160 ~~~~l~CpIC~~l~~dP---V~l-~CGhtfCr~CI~~~~~~~~~~CP~Cr~~~  208 (897)
                      +.++..|+||++-|.+.   +.+ .|||.|+..||.+|++. +..||.||+.+
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred             CCCCCCCEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHH-CCCCCCCCCEE
T ss_conf             88999984979001079889990898981059999999984-99387889784

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=0.00032  Score=42.77  Aligned_cols=278  Identities=10%  Similarity=0.081  Sum_probs=146.6

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCC----CHHHHHHHHHHCCCHHH---
Q ss_conf             99999999851489478999999999840100778888551232288999999409----26899999970998256---
Q 002641          314 VINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRT---  386 (897)
Q Consensus       314 a~~~~ke~L~~sl~~~vlk~av~~l~el~s~~~~~~~~i~~~~~~~~~i~~llk~g----~~ea~~LL~~L~~~~~~---  386 (897)
                      ++..+++.|.++-.+++...+...+..+-+........+. ..+.+..++.++++.    ...|...|..|.....+   
T Consensus        57 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~-~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~  135 (434)
T d1q1sc_          57 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVV-DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD  135 (434)
T ss_dssp             CHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH-HCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             9999999874699889999999999998639855104766-446315666403568799999999999988500168999


Q ss_pred             -HHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             -7887539999999983010112310585036899997551377321111000112141218999984200019999999
Q 002641          387 -LIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAA  465 (897)
Q Consensus       387 -i~~~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~  465 (897)
                       +...+.++.|+..+..........  .....+...+..+..+...     ........+.++.++..+..++.+.+..+
T Consensus       136 ~i~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~l~~l~~ll~~~~~~~~~~a  208 (434)
T d1q1sc_         136 LVIKHGAIDPLLALLAVPDLSTLAC--GYLRNLTWTLSNLCRNKNP-----APPLDAVEQILPTLVRLLHHNDPEVLADS  208 (434)
T ss_dssp             HHHHTTCHHHHHHHTCSSCGGGSCH--HHHHHHHHHHHHHTCCCTT-----CCCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             9998630058999987223210018--9999999999888642642-----21144365699999999852442012567


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             99975301246741136762123135899984217403588999999988300013369999986316863124689999
Q 002641          466 VGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVY  545 (897)
Q Consensus       466 ~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~g~~~~m~~l~~~  545 (897)
                      +..+......+...+..+.+..-+..+++++...+...+..++..+..+...+...     -..+-+.|   .+..+...
T Consensus       209 ~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~-----~~~~~~~~---~~~~l~~l  280 (434)
T d1q1sc_         209 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ-----TQKVIDAG---ALAVFPSL  280 (434)
T ss_dssp             HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH-----HHHHHHTT---GGGGHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHH-----HHHHHHCC---CCCHHHHH
T ss_conf             76640220123456777763154201000023430655402122135677666677-----89998525---64057776


Q ss_pred             HHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf             973176775058878776532028543451479999999998312896489999999988406
Q 002641          546 LQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQ  608 (897)
Q Consensus       546 l~~~~~~~~~~~a~lllqld~l~~~~~~s~~reea~~~~~~~l~~~~~~~~q~~~~~~l~~l~  608 (897)
                      +....++-+..++..|-.|=.-.+.....+.+...+..++..+.+.+ +.++..++.++.++.
T Consensus       281 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~-~~v~~~a~~~l~nl~  342 (434)
T d1q1sc_         281 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKEAAWAITNYT  342 (434)
T ss_dssp             TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSC-HHHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_conf             13641466688887886520045045777766546899998775158-688999999999998

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=4.8e-05  Score=48.60  Aligned_cols=178  Identities=16%  Similarity=0.146  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHH-HHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHH
Q ss_conf             3689999755137732111100011214121899998-420001999999999975301246741136762123135899
Q 002641          416 SVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVIS-SLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVME  494 (897)
Q Consensus       416 ~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~-~~~~~~~~~~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~~  494 (897)
                      .+|+-.|..+.-..|      |+..+++.||++.++. ++.+++.+-|..++.+|-...+.+..++..+.....+.+++.
T Consensus        35 ~~Al~~L~~L~~~~d------~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~  108 (264)
T d1xqra1          35 EGALELLADLCENMD------NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  108 (264)
T ss_dssp             HHHHHHHHHHHTSHH------HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHCCHH------HHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             999999999976978------89999986999999999837999999999999999999888888899997276379999


Q ss_pred             HHHHC-CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             98421-74035889999999883000133699999863168631246899999731767750588787765320285434
Q 002641          495 SFMAA-SDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKM  573 (897)
Q Consensus       495 ll~~~-~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~g~~~~m~~l~~~l~~~~~~~~~~~a~lllqld~l~~~~~~  573 (897)
                      +|... ....+..++..+..+...+...     .+.+...|++   ..|...+++..++-+--++.+|..|= ...|...
T Consensus       109 lL~~~~~~~v~~~a~~aL~~l~~~~~~~-----~~~~~~~~gi---~~L~~lL~~~~~~~~~~a~~~L~~l~-~~~~~~~  179 (264)
T d1xqra1         109 LLDRDACDTVRVKALFAISCLVREQEAG-----LLQFLRLDGF---SVLMRAMQQQVQKLKVKSAFLLQNLL-VGHPEHK  179 (264)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHH-----HHHHHHTTHH---HHHHHHHHSSCHHHHHHHHHHHHHHH-HHCGGGH
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHHHHH-HCCHHHH
T ss_conf             9604998999999999999874244026-----7899872012---68899880586578899999999987-4457788


Q ss_pred             CC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf             51-4799999999983128964899999999884065
Q 002641          574 SI-YREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG  609 (897)
Q Consensus       574 s~-~reea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g  609 (897)
                      .. ..+.++..++.-+.. ..+.+|..++.+|.+|..
T Consensus       180 ~~~~~~~~v~~L~~lL~~-~~~~~~~~a~~aL~~L~~  215 (264)
T d1xqra1         180 GTLCSMGMVQQLVALVRT-EHSPFHEHVLGALCSLVT  215 (264)
T ss_dssp             HHHHHTTHHHHHHHHHTS-CCSTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHH
T ss_conf             888876468999999739-998999999999999986

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.91  E-value=0.00011  Score=46.07  Aligned_cols=86  Identities=8%  Similarity=0.028  Sum_probs=55.4

Q ss_pred             EEECCCCCEEEEECCC----------CCEEEEECC--CCEEECCCCCCCEEEEEEECC----EEEEEECCCEEEEEECCC
Q ss_conf             3303456089973089----------976898088--640221479985799999099----799975499099995788
Q 002641          779 SPLAFEMVKVLSNGHD----------SSADFWNHR--ELVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       779 ~~~s~d~~~LaSgs~D----------gtIklWd~~--~~~~~l~gH~~~V~sV~fspd----~L~Sgs~DgtIkiWdl~~  842 (897)
                      ..+++++..++..+.+          ..+.+||..  +.+..+. +...+.+++|+||    ++++++.|++|++||+.+
T Consensus       254 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~t  332 (355)
T d2bbkh_         254 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES  332 (355)
T ss_dssp             EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             EEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCC
T ss_conf             99807997678874068712651799759998678884989966-89987799992899969999978999899999999


Q ss_pred             CCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf             8520388860368886899991699
Q 002641          843 SILHLIQQIREHTKAVTGLAILQSG  867 (897)
Q Consensus       843 ~~~~~i~~l~gH~~~V~slafspdg  867 (897)
                      +  +.+.++.++......+.+..+|
T Consensus       333 g--~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         333 G--EELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             C--CEEEEECCCCSSCCEEECCCCC
T ss_pred             C--CEEEEEECCCCCCCEEEECCCC
T ss_conf             9--8999992869796589969999

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.83  E-value=7.3e-05  Score=47.31  Aligned_cols=74  Identities=9%  Similarity=-0.013  Sum_probs=50.5

Q ss_pred             EEEEEECC--EEEEE-ECC--------CEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCC--EEEEEECCCCEEEEE
Q ss_conf             99999099--79997-549--------909999578885203888603688868999916999--999995899499995
Q 002641          817 LSIACFRD--KIFSG-HSD--------GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE--MLYSGSLDKTARVRS  883 (897)
Q Consensus       817 ~sV~fspd--~L~Sg-s~D--------gtIkiWdl~~~~~~~i~~l~gH~~~V~slafspdg~--~L~SgS~DgtIriWD  883 (897)
                      ..++++++  .++.. ..+        ..|.+||..++  +.+..+. +...+.+++|+|||+  .+++++.|++|++||
T Consensus       267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~--~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D  343 (368)
T d1mdah_         267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG--QTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC--CEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCC--CEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEEE
T ss_conf             56887179987999835897334058864999989999--4868955-89965179999899989999948999699998


Q ss_pred             CCCC-CCEEEE
Q ss_conf             8876-400120
Q 002641          884 NDSF-TYAIFI  893 (897)
Q Consensus       884 i~t~-~l~~l~  893 (897)
                      ..++ .+..+.
T Consensus       344 ~~tgk~~~~i~  354 (368)
T d1mdah_         344 AASDQDQSSVE  354 (368)
T ss_dssp             SSSCEEEEECC
T ss_pred             CCCCCEEEEEE
T ss_conf             99997999987

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=7.9e-06  Score=54.12  Aligned_cols=46  Identities=15%  Similarity=0.377  Sum_probs=36.1

Q ss_pred             CCCCCCCCCCC------------------CEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             03346457879------------------604378763316889999941999889888546888
Q 002641          165 VCPITTHIFDD------------------PVTLETGQTYERRAIQEWIERGNSSCPITRQKLSST  211 (897)
Q Consensus       165 ~CpIC~~l~~d------------------PV~l~CGhtfCr~CI~~~~~~~~~~CP~Cr~~~~~~  211 (897)
                      .|+||++-+.+                  ++.++|||.|+..||.+|++. +.+||+||+.+...
T Consensus        23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~   86 (88)
T d3dplr1          23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEFQ   86 (88)
T ss_dssp             CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCCEE
T ss_pred             CCEECCCHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHH-CCCCCCCCCCCCCC
T ss_conf             28783602418654323333213355687287265474657999999987-99687889723122

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.69  E-value=0.0014  Score=38.24  Aligned_cols=80  Identities=8%  Similarity=0.025  Sum_probs=34.3

Q ss_pred             CHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             00112141218999984200019999999999753012467411367621231358999842174035889999999883
Q 002641          437 IANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVK  516 (897)
Q Consensus       437 ~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~~  516 (897)
                      ++..+...|+++.|+..+...+.+.+..++.++............+.....-+..++.++...+...+..+...+..|..
T Consensus       196 ~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~  275 (503)
T d1wa5b_         196 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD  275 (503)
T ss_dssp             HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf             99988741355630120456888999999999999846874204799999999999987235638999999999875322

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.68  E-value=0.00069  Score=40.43  Aligned_cols=84  Identities=11%  Similarity=-0.017  Sum_probs=63.8

Q ss_pred             EECCCCCEEEEECCCCCEEEEECC--CCEEECCCCCCCEEEEEEECC----EEEEEECCCEEEEEECCCCCCEEEEEEEC
Q ss_conf             303456089973089976898088--640221479985799999099----79997549909999578885203888603
Q 002641          780 PLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGSILHLIQQIRE  853 (897)
Q Consensus       780 ~~s~d~~~LaSgs~DgtIklWd~~--~~~~~l~gH~~~V~sV~fspd----~L~Sgs~DgtIkiWdl~~~~~~~i~~l~g  853 (897)
                      ....++..+++...++.+.+||..  +.+..+ .+...+.++.|+||    ++++++.|++|++||+.++  +.+..+.+
T Consensus       283 ~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg--~~~~~~~~  359 (373)
T d2madh_         283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG--DQDQSTVE  359 (373)
T ss_pred             EECCCCCEEEEECCCCEEEEEECCCCCEEEEE-CCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCC--CEEEEECC
T ss_conf             95488824786258986999989999698986-6899825899998999899999679992999999999--89999888


Q ss_pred             CCCCEEEEEECCC
Q ss_conf             6888689999169
Q 002641          854 HTKAVTGLAILQS  866 (897)
Q Consensus       854 H~~~V~slafspd  866 (897)
                      +....+.+++..+
T Consensus       360 ~g~~P~~l~~~~~  372 (373)
T d2madh_         360 LGSGPQVLSVMNE  372 (373)
T ss_pred             CCCCCCEEEEECC
T ss_conf             8989818998468

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=97.67  E-value=2.2e-05  Score=51.03  Aligned_cols=50  Identities=18%  Similarity=0.339  Sum_probs=42.3

Q ss_pred             CCCCCCCCCCCCCCCCEECCCC-----CCCCHHHHHHHHHC-CCCCCCCCCCCCCC
Q ss_conf             9862033464578796043787-----63316889999941-99988988854688
Q 002641          161 PKDFVCPITTHIFDDPVTLETG-----QTYERRAIQEWIER-GNSSCPITRQKLSS  210 (897)
Q Consensus       161 ~~~l~CpIC~~l~~dPV~l~CG-----htfCr~CI~~~~~~-~~~~CP~Cr~~~~~  210 (897)
                      ++...|+||++-+.++...+|+     |.|++.||.+|+.. +..+||.||+.+..
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCCCCCCCCCCCCCEEEECCCCCCCCEECHHHHHHHHHHCCCCCCCCCCCEEEC
T ss_conf             88999923886277751673145897788738999999710789889166971242

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.63  E-value=0.00031  Score=42.85  Aligned_cols=53  Identities=6%  Similarity=0.017  Sum_probs=22.3

Q ss_pred             EEEEECC--CCEEECCCCCCCEEEEEEECC----EEEEEECCCEEEEEECCCCCCEEEEEEE
Q ss_conf             6898088--640221479985799999099----7999754990999957888520388860
Q 002641          797 ADFWNHR--ELVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGSILHLIQQIR  852 (897)
Q Consensus       797 IklWd~~--~~~~~l~gH~~~V~sV~fspd----~L~Sgs~DgtIkiWdl~~~~~~~i~~l~  852 (897)
                      +.+||..  +.+..+. +...+.++.|+||    .+++++.|++|++||..++  +.+..+.
T Consensus       296 v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg--k~~~~i~  354 (368)
T d1mdah_         296 TSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD--QDQSSVE  354 (368)
T ss_dssp             EEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC--EEEEECC
T ss_pred             EEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCC--CEEEEEE
T ss_conf             9999899994868955-899651799998999899999489996999989999--7999987

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00015  Score=45.08  Aligned_cols=36  Identities=25%  Similarity=0.318  Sum_probs=19.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf             514799999999983128964899999999884065
Q 002641          574 SIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG  609 (897)
Q Consensus       574 s~~reea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g  609 (897)
                      ......++..++..+.....+.++..+..++..+..
T Consensus       278 ~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~  313 (457)
T d1xm9a1         278 WLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA  313 (457)
T ss_dssp             GGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             998604799999987336635788999999888861

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=0.0045  Score=34.71  Aligned_cols=190  Identities=11%  Similarity=0.099  Sum_probs=95.7

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCC----CHHHHHHHHHHCCCHH----HH
Q ss_conf             999999851489478999999999840100778888551232288999999409----2689999997099825----67
Q 002641          316 NGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTR----TL  387 (897)
Q Consensus       316 ~~~ke~L~~sl~~~vlk~av~~l~el~s~~~~~~~~i~~~~~~~~~i~~llk~g----~~ea~~LL~~L~~~~~----~i  387 (897)
                      ..+...+....+..+...+...+..+-+........+. ..+....+..++++.    ...+..+|..|.....    .+
T Consensus       122 ~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~-~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l  200 (503)
T d1wa5b_         122 PRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVV-DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV  200 (503)
T ss_dssp             HHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH-HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999871799999999999999999749888779999-67874789998559971589999999999854118999988


Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             88753999999998301011231058503689999755137732111100011214121899998420001999999999
Q 002641          388 IEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVG  467 (897)
Q Consensus       388 ~~~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~  467 (897)
                      ...+.++.|+..+......      .-+ .+..++..+....+.     ........++++.|+..+..++.+.+..++.
T Consensus       201 ~~~~~~~~L~~ll~~~~~~------~~~-~~~~~l~nl~~~~~~-----~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~  268 (503)
T d1wa5b_         201 LQCNAMEPILGLFNSNKPS------LIR-TATWTLSNLCRGKKP-----QPDWSVVSQALPTLAKLIYSMDTETLVDACW  268 (503)
T ss_dssp             HHTTCHHHHHHGGGSCCHH------HHH-HHHHHHHHHHCCSSS-----CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHH
T ss_pred             HHHCCCCCCHHHCCCCCHH------HHH-HHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             7413556301204568889------999-999999998468742-----0479999999999998723563899999999


Q ss_pred             HHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Q ss_conf             975301246741136762123135899984217403588999999988300
Q 002641          468 ILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLN  518 (897)
Q Consensus       468 il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~~~~  518 (897)
                      .+......+......+.+...+..+++++...+...+..++.++..++..+
T Consensus       269 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~  319 (503)
T d1wa5b_         269 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN  319 (503)
T ss_dssp             HHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             987532277111100112233111011025786364456777777787788

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=0.0047  Score=34.55  Aligned_cols=178  Identities=10%  Similarity=0.110  Sum_probs=78.1

Q ss_pred             CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCC---------HHHHHHHHHHCCCHHHH----HHHHHH
Q ss_conf             94789999999998401007788885512322889999994092---------68999999709982567----887539
Q 002641          327 DPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGL---------LEAVVLIDLLRPSTRTL----IEMDMM  393 (897)
Q Consensus       327 ~~~vlk~av~~l~el~s~~~~~~~~i~~~~~~~~~i~~llk~g~---------~ea~~LL~~L~~~~~~i----~~~~~~  393 (897)
                      +..+.+.+...+..+...++..+..+.+. +....++.+++...         ......+..+.......    ...+.+
T Consensus       112 ~~~~~~~a~~~L~nl~~~~~~~~~~i~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l  190 (434)
T d1q1sc_         112 HAHISEQAVWALGNIAGDGSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL  190 (434)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             79999999999998850016899999986-30058999987223210018999999999988864264221144365699


Q ss_pred             HHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf             99999998301011231058503689999755137732111100011214121899998420001999999999975301
Q 002641          394 ESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCM  473 (897)
Q Consensus       394 ~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c~  473 (897)
                      +.|+..+..++..      . ...|+..+..+....+     .....+...|+++.|+..+++++.+-+..+...+....
T Consensus       191 ~~l~~ll~~~~~~------~-~~~a~~~l~~l~~~~~-----~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~  258 (434)
T d1q1sc_         191 PTLVRLLHHNDPE------V-LADSCWAISYLTDGPN-----ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV  258 (434)
T ss_dssp             HHHHHHTTCSCHH------H-HHHHHHHHHHHTSSCH-----HHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCC------H-HHHHHHHHCCCCHHHH-----HHHHHHHHCCCCHHCCCCCCCCHHHHHHCHHHHHHHHH
T ss_conf             9999998524420------1-2567766402201234-----56777763154201000023430655402122135677


Q ss_pred             CCCCCCHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             24674113676212313589998421740358899999998830
Q 002641          474 QEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKL  517 (897)
Q Consensus       474 ~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~~~  517 (897)
                      ..+...+.++.+...+.+++.++.......+..++..+..|...
T Consensus       259 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  302 (434)
T d1q1sc_         259 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG  302 (434)
T ss_dssp             TSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCC
T ss_conf             66667789998525640577761364146668888788652004

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.01  E-value=0.0001  Score=46.24  Aligned_cols=112  Identities=10%  Similarity=-0.059  Sum_probs=75.3

Q ss_pred             EEEEEECCCCCEE-EEECCCCCEEEEECCCCEEECCCCCC-------------CEEEEEEECC--EEEEEECCCEEEEEE
Q ss_conf             0673303456089-97308997689808864022147998-------------5799999099--799975499099995
Q 002641          776 RKYSPLAFEMVKV-LSNGHDSSADFWNHRELVHVDSSENG-------------KVLSIACFRD--KIFSGHSDGTIKVWT  839 (897)
Q Consensus       776 ~~~~~~s~d~~~L-aSgs~DgtIklWd~~~~~~~l~gH~~-------------~V~sV~fspd--~L~Sgs~DgtIkiWd  839 (897)
                      ..-..+++||+++ +++..|++|.+||+.++...+.++-.             ......|.++  .+.|.+.|..|..|+
T Consensus       260 PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~  339 (441)
T d1qnia2         260 PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWN  339 (441)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             CCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECCCCEEEECCCCCCEEEEEC
T ss_conf             66726899987899907759938999832244575256884247996014554766522657855998524431689723


Q ss_pred             CCCC-------C-CEEEEEE-----ECCCCCEEEEEECCCCCEEEEE---ECCCCE----------EEEECCCC
Q ss_conf             7888-------5-2038886-----0368886899991699999999---589949----------99958876
Q 002641          840 GRGS-------I-LHLIQQI-----REHTKAVTGLAILQSGEMLYSG---SLDKTA----------RVRSNDSF  887 (897)
Q Consensus       840 l~~~-------~-~~~i~~l-----~gH~~~V~slafspdg~~L~Sg---S~DgtI----------riWDi~t~  887 (897)
                      +...       . ...+..+     .||...+.+..|+|||++|+|+   |.|+.+          .+.|+.+.
T Consensus       340 ~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~  413 (441)
T d1qnia2         340 IADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISGE  413 (441)
T ss_dssp             HHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSSS
T ss_pred             CCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf             54221332267776568645326689877524542238988489965744425576788898764426981597

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00012  Score=45.93  Aligned_cols=44  Identities=14%  Similarity=0.265  Sum_probs=33.3

Q ss_pred             CCCCCCCCCCCC--C-CEECCCCCCCCHHHHHHHHHC----CC---CCCCCCCC
Q ss_conf             620334645787--9-604378763316889999941----99---98898885
Q 002641          163 DFVCPITTHIFD--D-PVTLETGQTYERRAIQEWIER----GN---SSCPITRQ  206 (897)
Q Consensus       163 ~l~CpIC~~l~~--d-PV~l~CGhtfCr~CI~~~~~~----~~---~~CP~Cr~  206 (897)
                      ...||||++.+.  + ++.++|||.||+.|+..|++.    +.   ..||.|+-
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCCCCCCCCCCCCCCEEEECCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             984931798360775577789999848817999999998517966558919998

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=96.75  E-value=0.013  Score=31.45  Aligned_cols=57  Identities=14%  Similarity=0.024  Sum_probs=23.1

Q ss_pred             EEEEEECC--EEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEE---CCCCCEEEEEE
Q ss_conf             99999099--799975499099995788852038886036888689999---16999999995
Q 002641          817 LSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI---LQSGEMLYSGS  874 (897)
Q Consensus       817 ~sV~fspd--~L~Sgs~DgtIkiWdl~~~~~~~i~~l~gH~~~V~slaf---spdg~~L~SgS  874 (897)
                      ..+++.++  ++++...++.|..++..... ..+......-...++++|   .+|++.|+.++
T Consensus       211 dgia~d~dG~l~va~~~~~~V~~i~p~G~~-~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         211 DDFAFDVEGNLYGATHIYNSVVRIAPDRST-TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             SSEEEBTTCCEEEECBTTCCEEEECTTCCE-EEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             CCEEECCCCCEEEEECCCCCEEEECCCCCE-EEEEECCCCCCCCEEEEECCCCCCCCEEEEEC
T ss_conf             523787999999997489918998789978-99996378988824899708788789899998

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=95.94  E-value=0.012  Score=31.67  Aligned_cols=101  Identities=10%  Similarity=-0.112  Sum_probs=66.3

Q ss_pred             CCCCEEEEECCCCCEEEEECC--CCEEECCCCCCCEEEEEEECC---EEEEEECCCEEEEEECCCCC------C---EEE
Q ss_conf             456089973089976898088--640221479985799999099---79997549909999578885------2---038
Q 002641          783 FEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI------L---HLI  848 (897)
Q Consensus       783 ~d~~~LaSgs~DgtIklWd~~--~~~~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIkiWdl~~~~------~---~~i  848 (897)
                      ++++++..++ ++.+.+|+..  ..+..+..+++ ...+.++||   .++++..|++|.+||+.+..      .   ..+
T Consensus       227 ~dGk~~~v~~-~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~  304 (441)
T d1qnia2         227 KAGNFKTIGD-SKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTI  304 (441)
T ss_dssp             HTTCCBCCTT-CCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGE
T ss_pred             CCCCEEEECC-CCCEEEECCCCCCEEEEEECCCC-CCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEE
T ss_conf             6999999699-98289980368706899717988-667268999878999077599389998322445752568842479


Q ss_pred             EEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf             8860368886899991699999999589949999588
Q 002641          849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSND  885 (897)
Q Consensus       849 ~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWDi~  885 (897)
                      .......-.....+|.++|+.+.|.+.|.+|..|++.
T Consensus       305 ~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         305 VAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             EEECCCCCCCCCCEECCCCEEEECCCCCCEEEEECCC
T ss_conf             9601455476652265785599852443168972354

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.11  Score=25.01  Aligned_cols=81  Identities=9%  Similarity=0.037  Sum_probs=36.8

Q ss_pred             CHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Q ss_conf             00112141218999984200019999999999753012467411367621231358999842-17403588999999988
Q 002641          437 IANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMA-ASDGERFEIVCFLSELV  515 (897)
Q Consensus       437 ~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~-~~~~~~~~~~~~l~el~  515 (897)
                      ++..+...||+|.|++.+++++.+-|..++..|..-...+..+|..+.+...+..++.++.. .+...+..++..|..+.
T Consensus        36 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~  115 (457)
T d1xm9a1          36 AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLS  115 (457)
T ss_dssp             HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             99999988859999998779998999999999999974998889999987982899999843373889999999999998


Q ss_pred             HH
Q ss_conf             30
Q 002641          516 KL  517 (897)
Q Consensus       516 ~~  517 (897)
                      ..
T Consensus       116 ~~  117 (457)
T d1xm9a1         116 ST  117 (457)
T ss_dssp             TS
T ss_pred             HH
T ss_conf             64

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=92.89  E-value=0.18  Score=23.41  Aligned_cols=111  Identities=5%  Similarity=-0.121  Sum_probs=64.3

Q ss_pred             EEEEEECCCCCEEEEECCCCCEEEEECC-CCEE---------EC--CCCCCCEEEEEEECC-EEEEEECCCEEEEEECCC
Q ss_conf             0673303456089973089976898088-6402---------21--479985799999099-799975499099995788
Q 002641          776 RKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVH---------VD--SSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       776 ~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~~~---------~l--~gH~~~V~sV~fspd-~L~Sgs~DgtIkiWdl~~  842 (897)
                      .+-..+.+++.++++.+.++.+..++.. ....         ..  .........+.+..+ .+++.+..+.|..++...
T Consensus       115 ~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~  194 (302)
T d2p4oa1         115 LNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDS  194 (302)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCT
T ss_pred             CCEEEECCCCCEEEECCCCCCCEEEECCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCC
T ss_conf             21667715797875035655410242168730367518864014315763224320116983044037887698634433


Q ss_pred             CC-CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf             85-2038886036888689999169999999958994999958876
Q 002641          843 SI-LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       843 ~~-~~~i~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWDi~t~  887 (897)
                      .. ......+. .......++|.++|+++++...+++|..++..+.
T Consensus       195 ~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         195 TDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             TSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred             CCCCCCCCCCC-CCCCCCCEEECCCCCEEEEECCCCCEEEECCCCC
T ss_conf             33234531015-8998752378799999999748991899878997

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.54  E-value=0.2  Score=23.09  Aligned_cols=90  Identities=10%  Similarity=-0.027  Sum_probs=50.7

Q ss_pred             CEEECCCCCCCEEEE-EEECC---EEEEEECCC--EEEEEECC--CC-CCEEEEEEECCCCCEEEEEECCCCCEEEEEE-
Q ss_conf             402214799857999-99099---799975499--09999578--88-5203888603688868999916999999995-
Q 002641          805 LVHVDSSENGKVLSI-ACFRD---KIFSGHSDG--TIKVWTGR--GS-ILHLIQQIREHTKAVTGLAILQSGEMLYSGS-  874 (897)
Q Consensus       805 ~~~~l~gH~~~V~sV-~fspd---~L~Sgs~Dg--tIkiWdl~--~~-~~~~i~~l~gH~~~V~slafspdg~~L~SgS-  874 (897)
                      ....++...-.|..+ .|+.+   ..+++..++  .-++|.+.  +. ..+++..-........++.|+|+|++++-.. 
T Consensus       350 ~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s  429 (465)
T d1xfda1         350 NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (465)
T ss_dssp             CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             EEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEECCCCCCCCCEEEEEECCCCCEEEEEEE
T ss_conf             26982269921997789838999999999689998268999977899860553144678898799999999999999800


Q ss_pred             --CCCCEEEEECCCC-CCEEEEC
Q ss_conf             --8994999958876-4001203
Q 002641          875 --LDKTARVRSNDSF-TYAIFIQ  894 (897)
Q Consensus       875 --~DgtIriWDi~t~-~l~~l~~  894 (897)
                        .--.+.+++..++ .+..|..
T Consensus       430 ~~~~P~~~~~~~~~~~~~~~Le~  452 (465)
T d1xfda1         430 GPGVPMVTVHNTTDKKKMFDLET  452 (465)
T ss_dssp             SSSSCCEEEEETTTCCEEEEEEC
T ss_pred             CCCCCEEEEEECCCCCEEEEECC
T ss_conf             69998499999999979999738

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.14  E-value=0.22  Score=22.77  Aligned_cols=110  Identities=11%  Similarity=0.183  Sum_probs=76.7

Q ss_pred             CCEEEEEECCCCCEEEEECCCCCEEEEECC-CCEEECC--CCCCCEEEEEEECC--EEEEE-ECCCEEEEEECCCCCCEE
Q ss_conf             550673303456089973089976898088-6402214--79985799999099--79997-549909999578885203
Q 002641          774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDS--SENGKVLSIACFRD--KIFSG-HSDGTIKVWTGRGSILHL  847 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~~~~l~--gH~~~V~sV~fspd--~L~Sg-s~DgtIkiWdl~~~~~~~  847 (897)
                      ..........++..+++....+.|.+|+.. +.+..+.  +.......+++.++  ++++- ..++.|.+++...   ..
T Consensus       157 ~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G---~~  233 (279)
T d1q7fa_         157 EFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG---QL  233 (279)
T ss_dssp             SSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS---CE
T ss_pred             CCCCEEEECCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCC---CE
T ss_conf             566243201200178620135510023047944453011321148762323147869999789980899999999---99


Q ss_pred             EEEEECC--CCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf             8886036--888689999169999999958994999958876
Q 002641          848 IQQIREH--TKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       848 i~~l~gH--~~~V~slafspdg~~L~SgS~DgtIriWDi~t~  887 (897)
                      +.++...  ....+.+++.++|.+++ ++.+++|++|.....
T Consensus       234 ~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         234 ISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             EEEEECCCCCCCEEEEEEECCCCEEE-EECCCEEEEEEEEEE
T ss_conf             99996888889883799908991999-918996999872203

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.90  E-value=0.24  Score=22.58  Aligned_cols=106  Identities=10%  Similarity=0.024  Sum_probs=63.0

Q ss_pred             CCEEEEECCCCCEEEEEC--C-CCEEECCCCCCCEEEEEEECC--E-EEEEECCCEEEEEECCCCCCEEEEEEECCCCCE
Q ss_conf             608997308997689808--8-640221479985799999099--7-999754990999957888520388860368886
Q 002641          785 MVKVLSNGHDSSADFWNH--R-ELVHVDSSENGKVLSIACFRD--K-IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAV  858 (897)
Q Consensus       785 ~~~LaSgs~DgtIklWd~--~-~~~~~l~gH~~~V~sV~fspd--~-L~Sgs~DgtIkiWdl~~~~~~~i~~l~gH~~~V  858 (897)
                      ...+++...++...+|..  . ........+........|+|+  . +++....+...+|...... ... ....+....
T Consensus       139 ~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~~~~  216 (269)
T d2hqsa1         139 QNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GGV-QVLSSTFLD  216 (269)
T ss_dssp             SEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-CCE-EECCCSSSC
T ss_pred             CCCEECCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCC-CCC-EEEECCCCC
T ss_conf             433000012687438654213310001000122223432234543057786058801256760356-440-585068654


Q ss_pred             EEEEECCCCCEEEEEEC---CCCEEEEECCCCCCEEE
Q ss_conf             89999169999999958---99499995887640012
Q 002641          859 TGLAILQSGEMLYSGSL---DKTARVRSNDSFTYAIF  892 (897)
Q Consensus       859 ~slafspdg~~L~SgS~---DgtIriWDi~t~~l~~l  892 (897)
                      ....|+|||+.|+-.+.   ...+.+|++.++....+
T Consensus       217 ~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~l  253 (269)
T d2hqsa1         217 ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL  253 (269)
T ss_dssp             EEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEEC
T ss_pred             CCEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEE
T ss_conf             4558989999999998179984799999999977998

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.09  E-value=0.35  Score=21.43  Aligned_cols=13  Identities=0%  Similarity=-0.210  Sum_probs=5.3

Q ss_pred             EEECCCCCEEEEE
Q ss_conf             3303456089973
Q 002641          779 SPLAFEMVKVLSN  791 (897)
Q Consensus       779 ~~~s~d~~~LaSg  791 (897)
                      .|+++||++||..
T Consensus       178 ~~WSPDgk~iaf~  190 (465)
T d1xfda1         178 HWWSPDGTRLAYA  190 (465)
T ss_dssp             EEECTTSSEEEEE
T ss_pred             EEECCCCCEEEEE
T ss_conf             8977989868999

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=88.33  E-value=0.45  Score=20.58  Aligned_cols=32  Identities=6%  Similarity=-0.100  Sum_probs=18.1

Q ss_pred             CCEEEEEECC-CCCEEEEE-ECCCCEEEEECCCC
Q ss_conf             8868999916-99999999-58994999958876
Q 002641          856 KAVTGLAILQ-SGEMLYSG-SLDKTARVRSNDSF  887 (897)
Q Consensus       856 ~~V~slafsp-dg~~L~Sg-S~DgtIriWDi~t~  887 (897)
                      +....++++| +|++++.+ ..+++|.+|++...
T Consensus       309 ~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         309 GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCEEEECCCCCCEEEEEECCCCEEEEEEEECC
T ss_conf             9864789648999999999679994999998288

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=88.18  E-value=0.47  Score=20.51  Aligned_cols=113  Identities=9%  Similarity=-0.112  Sum_probs=70.6

Q ss_pred             CCEEEEEECCCCCEEEEECCC-CCEEEEECC---CC--EEEC--CCCCCCEEEEEEECC---EEEEEECCCEEEEEECCC
Q ss_conf             550673303456089973089-976898088---64--0221--479985799999099---799975499099995788
Q 002641          774 ELRKYSPLAFEMVKVLSNGHD-SSADFWNHR---EL--VHVD--SSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG  842 (897)
Q Consensus       774 ~~~~~~~~s~d~~~LaSgs~D-gtIklWd~~---~~--~~~l--~gH~~~V~sV~fspd---~L~Sgs~DgtIkiWdl~~  842 (897)
                      .......++++++++++.+.. ..|.+|+..   ..  ....  .........+.|+|+   ..+++-.+++|.+|+...
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECC
T ss_conf             81159788899998998207998799997068871665251111278874089998899866999515899899999559


Q ss_pred             CCCEEEEEEE-----------------CCCCCEEEEEECCCCCEEEEEEC-CC-----CEEEEECCC
Q ss_conf             8520388860-----------------36888689999169999999958-99-----499995887
Q 002641          843 SILHLIQQIR-----------------EHTKAVTGLAILQSGEMLYSGSL-DK-----TARVRSNDS  886 (897)
Q Consensus       843 ~~~~~i~~l~-----------------gH~~~V~slafspdg~~L~SgS~-Dg-----tIriWDi~t  886 (897)
                      .....+....                 .+......+.++|+|++++++.. +.     .|..|++..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~  291 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD  291 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred             CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECC
T ss_conf             8753778731240245565566654444357763169989999789971357875422799998568

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=86.24  E-value=0.59  Score=19.78  Aligned_cols=78  Identities=13%  Similarity=0.025  Sum_probs=45.1

Q ss_pred             CCCCCCEEEEEEECC-EEEEEECCC--EEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf             479985799999099-799975499--09999578885203888603688868999916999999995899499995887
Q 002641          810 SSENGKVLSIACFRD-KIFSGHSDG--TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDS  886 (897)
Q Consensus       810 ~gH~~~V~sV~fspd-~L~Sgs~Dg--tIkiWdl~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWDi~t  886 (897)
                      ..+........++++ .++....++  .|.++|+.+..   ...+..+.. .....|+|||+.|+-. .++.+.++|+.+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~---~~~lt~~~~-~~~~~~SpDG~~I~f~-~~~~l~~~d~~~  262 (281)
T d1k32a2         188 VDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKD---LRKHTSFTD-YYPRHLNTDGRRILFS-KGGSIYIFNPDT  262 (281)
T ss_dssp             ECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCS---CEECCCCCS-SCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred             CCCCCCCCEEEEECCCCCEECCCCCCCCEEEEECCCCC---EEEEECCCC-CCCCCCCCCCCEEEEE-ECCEEEEEECCC
T ss_conf             47766642133103532000113455212899689996---598105898-6443286798999998-599999998999


Q ss_pred             CCCEEE
Q ss_conf             640012
Q 002641          887 FTYAIF  892 (897)
Q Consensus       887 ~~l~~l  892 (897)
                      +..+.+
T Consensus       263 g~~~~i  268 (281)
T d1k32a2         263 EKIEKI  268 (281)
T ss_dssp             CCEEEC
T ss_pred             CCEEEE
T ss_conf             987884

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.68  E-value=0.031  Score=28.80  Aligned_cols=39  Identities=26%  Similarity=0.113  Sum_probs=33.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCH
Q ss_conf             321222444127799999985303211000123317674022011225333210020
Q 002641          255 SVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSK  311 (897)
Q Consensus       255 ~vc~~h~~~~~~~~L~~~i~~L~~~e~L~~ce~~ic~ic~~~~~~~~~h~~h~~l~~  311 (897)
                      .+|..|.     +.+     ++||.++    +.++|..|..    .+.|+.|.+.|+
T Consensus         2 ~~C~~H~-----e~l-----~lfC~~d----~~~iC~~C~~----~~~H~~H~v~pi   40 (40)
T d2dida1           2 SLCPQHH-----EAL-----SLFCYED----QEAVCLICAI----SHTHRAHTVVPL   40 (40)
T ss_dssp             CBCTTTC-----CBC-----CEEESSS----CSEECHHHHT----SSTTTTSCEEEC
T ss_pred             CCCHHHC-----CCC-----EEECCCC----CCEEECCCCC----CCCCCCCCEECC
T ss_conf             7561119-----220-----2882559----9386512838----798689758609

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.00  E-value=0.67  Score=19.38  Aligned_cols=113  Identities=13%  Similarity=0.129  Sum_probs=77.0

Q ss_pred             EEEEECCCCCEEEEECCCCCEEEEECC-CCEEEC--CCCCCCEEEEEEECC--EEEEEECCCEEEEEECCCCCCEEEEEE
Q ss_conf             673303456089973089976898088-640221--479985799999099--799975499099995788852038886
Q 002641          777 KYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVD--SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI  851 (897)
Q Consensus       777 ~~~~~s~d~~~LaSgs~DgtIklWd~~-~~~~~l--~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~~~~~~i~~l  851 (897)
                      .......++..+++....+.+.+++.. +.+..+  ..+......+++.++  .+++....+.|++|+....   .+..+
T Consensus       117 ~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~---~~~~~  193 (279)
T d1q7fa_         117 RGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ---YLRQI  193 (279)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC---EEEEE
T ss_pred             CEECCCCCCCEEEEEECCCEEEEECCCCCEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCCEEEEECCCC---EEEEE
T ss_conf             200001478479996326325676268750100220010256624320120017862013551002304794---44530


Q ss_pred             E--CCCCCEEEEEECCCCCEEEEEEC-CCCEEEEECCCCCCEEE
Q ss_conf             0--36888689999169999999958-99499995887640012
Q 002641          852 R--EHTKAVTGLAILQSGEMLYSGSL-DKTARVRSNDSFTYAIF  892 (897)
Q Consensus       852 ~--gH~~~V~slafspdg~~L~SgS~-DgtIriWDi~t~~l~~l  892 (897)
                      .  ++......+++.++|+.+++-+. ++.|.+|+..+..+.++
T Consensus       194 g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~  237 (279)
T d1q7fa_         194 GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISAL  237 (279)
T ss_dssp             SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEE
T ss_conf             11321148762323147869999789980899999999999999

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=84.16  E-value=0.057  Score=26.95  Aligned_cols=38  Identities=18%  Similarity=0.061  Sum_probs=31.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCH
Q ss_conf             21222444127799999985303211000123317674022011225333210020
Q 002641          256 VISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSK  311 (897)
Q Consensus       256 vc~~h~~~~~~~~L~~~i~~L~~~e~L~~ce~~ic~ic~~~~~~~~~h~~h~~l~~  311 (897)
                      .|+.|.     +.+     +|||.++    +.++|..|..    .++|+.|.+.|+
T Consensus         2 ~C~~H~-----e~l-----~lfC~~d----~~~iC~~C~~----~~~H~~H~v~pi   39 (39)
T d1frea_           2 KCSEHD-----ERL-----KLYCKDD----GTLSCVICRD----SLKHASHNFLPI   39 (39)
T ss_dssp             CCCSSC-----SSC-----CCCCCSS----SSSSCCTTSS----CSSCTTCCCCCC
T ss_pred             CCCCCC-----CCE-----EEECCCC----CCEEECCCCC----CCCCCCCCEEEC
T ss_conf             776648-----320-----2893459----9286433838----797589768619

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.13  E-value=0.73  Score=19.12  Aligned_cols=107  Identities=5%  Similarity=-0.076  Sum_probs=71.0

Q ss_pred             EEEECCCCCEEEEECCCCCEEEEECC-CCEEECC-CCCCCEEEEEEECC--EEEEEECCCEEEEEECCCCCCEEEEEEE-
Q ss_conf             73303456089973089976898088-6402214-79985799999099--7999754990999957888520388860-
Q 002641          778 YSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDS-SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR-  852 (897)
Q Consensus       778 ~~~~s~d~~~LaSgs~DgtIklWd~~-~~~~~l~-gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~~~~~~i~~l~-  852 (897)
                      ...+.+++..+++...++.|..++.. .....+. ..-.....+++.++  ++++....+.|..++.....   ...+. 
T Consensus       144 ~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~---~~~~~~  220 (260)
T d1rwia_         144 GVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---STVLPF  220 (260)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC---CEECCC
T ss_pred             EEEECCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCE---EEEECC
T ss_conf             05454899886410256433222343100122210114787631231000134321489989999699976---999706


Q ss_pred             CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf             36888689999169999999958994999958876
Q 002641          853 EHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF  887 (897)
Q Consensus       853 gH~~~V~slafspdg~~L~SgS~DgtIriWDi~t~  887 (897)
                      ..-...+.+++.++|+.+++-..+++|+..+....
T Consensus       221 ~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~~  255 (260)
T d1rwia_         221 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  255 (260)
T ss_dssp             CSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             CCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCC
T ss_conf             99898179999089999999799998999959998

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=82.32  E-value=0.86  Score=18.64  Aligned_cols=98  Identities=8%  Similarity=0.045  Sum_probs=64.9

Q ss_pred             EEEEECCCCCEEEEECC--C------CEEECCC-CCCCEEEEEEECC--EEEEEECCCEEEEEECCCCCCEEEEEEECCC
Q ss_conf             89973089976898088--6------4022147-9985799999099--7999754990999957888520388860368
Q 002641          787 KVLSNGHDSSADFWNHR--E------LVHVDSS-ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHT  855 (897)
Q Consensus       787 ~LaSgs~DgtIklWd~~--~------~~~~l~g-H~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~~~~~~i~~l~gH~  855 (897)
                      ..++.+..+.|..|++.  .      ....+.+ +.+..-.+++..+  ++++....+.|.+||...+.  ....+....
T Consensus       190 lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~--~~~~i~~p~  267 (314)
T d1pjxa_         190 LIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ--PKMRIRCPF  267 (314)
T ss_dssp             EEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS--CSEEEECSS
T ss_pred             EEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCE--EEEEEECCC
T ss_conf             999860243117761167654301568997133566641025783478579998279999999699997--999997999


Q ss_pred             CCEEEEEECCCCC-EEEEEECCCCEEEEECCC
Q ss_conf             8868999916999-999995899499995887
Q 002641          856 KAVTGLAILQSGE-MLYSGSLDKTARVRSNDS  886 (897)
Q Consensus       856 ~~V~slafspdg~-~L~SgS~DgtIriWDi~t  886 (897)
                      ..+++++|.|+++ .+++.+.+++|.-.++..
T Consensus       268 ~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         268 EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCEEEEEEECCCCEEEEEECCCCCEEEEECCC
T ss_conf             98789999289899999987899199997899