Citrus Sinensis ID: 002658

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890------
Protein Sequence
MSSQPNKFTKPAKPTSQGQQSSSANASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGSDDQKSSPGGKAPEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLTKGKAGNISEKAVVILKKKAPALSDKELNPEFFQNLSRGSGDLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRSNRMGNSQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRAPDVERELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKYNGRTPFGERFAQSDGVAASTRGRGPSWRSDMSDAWDFTAYCASRNGQLGSRRAPGGGPVDSRSPKSEHDNDQVGGRRAWDKGTGPVRLGEGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVAIPELTAEAMGDDNVGQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQFDK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHcccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHccccccccccccccccHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccHHHHHEEcccccccccccccccccccHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHccccHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEccHHHHHHHHHHHHHHHcccccccHHccccHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mssqpnkftkpakptsqgqqsssanasrsssLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNClyessndpkpavkKESVRLLALVCELHSELTSTHVTKIISHIVKRlkdsdsgmkEACRDSIGSLSKLYlngkeenngtvvGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVecasdppvvAFQKLCARICKLLSNQNFMAKASLLPVVgslsqvgaiapqslEPLLQSIHECLGSTDWATRKAAADALSALALHssnlvidgaTSTLTVLEAcrfdkikpvRDSMNEALQLWKKIAgkvdvgsddqksspggkapepgedlknlnpsdkraelsakgplngsspasasltkgkagnisEKAVVILKKkapalsdkelnpEFFQnlsrgsgdlpvevvvprrclnssnsnneeesdpsdldskgrsnrmgnsqtddfsvslnnkhrsidrgtaggngkdprmrapdverelsgnragfsktdsqaegsfinnKGNWLAIQRQLMQLERQQAHLMNMLQdfmggshdSMVTLENRVRGLERVVEDMARDLsissgrrgsnfamgfegsnnrslgkyngfaeysgtkyngrtpfgerfaqsdgvaastrgrgpswrsdmsdawDFTAYCasrngqlgsrrapgggpvdsrspksehdndqvggrrawdkgtgpvrlgegpsarsVWQASKDEATLEAIRVAgedsgtsrsarvaipeltaeamgddnvgqerdpiwtswtnamdaiqvgdlDTAYAEVVSTGDDFLLVKLmdrsgpvvdQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLengphvlgiPMELKKELLLNLHeasttmdppedwegpapdQLLLQLASAWEIELQQFDK
Flexible Loop (DISEMBL)
mssqpnkftkpakptsqgqqsssanasRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELhseltsthvtKIISHIVkrlkdsdsgmKEACRDSIGSLSKLYlngkeenngTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAgkvdvgsddqksspggkapepgedlknlnPSDKRAELsakgplngsspasasltkgkagniseKAVVILKKKapalsdkelnPEFFQnlsrgsgdlpvEVVVPRRclnssnsnneeesdpsdldskgrsnrmgnsqtddfsvslnnkhrsidrgtaggngkdprmrapdverelsgnragfsktdsqaegSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDlsissgrrgsnfaMGFEGSNNRSLGKYNGFAEYSGTKYNGRTPFgerfaqsdgvaastrgrgpswrsdMSDAWDFTAYCASRNGQLGSRRApgggpvdsrspksehdndqvggrrawdkgtgpvrlgegpsarsvwqaSKDEATLEAIrvagedsgtsrsarVAIPeltaeamgddnvgQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQFDK
Low Complexity Region (SEG)
MSSQPNKFTKPAKPTsqgqqsssanasrssslssHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKaaadalsalalhssNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGSDDQKSSPGGKAPEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLTKGKAGNISEKAVVILKKKAPALSDKELNPEFFQNLSRGSGDLPVEVVVPRRCLnssnsnneeesDPSDLDSKGRSNRMGNSQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRAPDVERELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKYNGRTPFGERFAQSDGVAASTRGRGPSWRSDMSDAWDFTAYCASRNGQLGSRRAPGGGPVDSRSPKSEHDNDQVGGRRAWDKGTGPVRLGEGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVAIPELTAEAMGDDNVGQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMelkkelllnlHEASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQFDK
Disordered region (IsUnstruct)
********************************************************THQIAIEDLEKTIQTLSQESLPMLLNCLYE************SVRLLALVCELHSELTSTHVTKIISHIVKRL*************SIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKV**************************************************************VVIL****************************VEVVV*****************************************************************************************FINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGG****MVTLENRVRGLERV*********************************YNGFAEYS*************************************AWDFTAYCA******************************************************************************************************DPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLH*******************LLLQLASAWEIE******
Disordered Region (DISOPRED)
******************************************QKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSN****AVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGS*DWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLW***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************D*ATLEA***************************************TSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEAST**D****WEGPAPDQLLLQLASAWEIELQQF**
Disordered Region (DISEMBL)
***********************************LAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKV*****************PGEDLKNLNPSDKRAELSAKGPLNGSSPASASLTKGKAGNISEKAVVILKKKAPALSDKELNPEFFQNLSRGSGDLPVEVVVPRRCLNS*************************SQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRAPDVERELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKYNGRTPFGERFAQ***************RSDMSDAWDFTAYCASRNGQLG***************************RAWDKGTGPVRLG***********SKDEATLEAIRVAG********ARVAIPELTAEAMGDDNVGQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQFDK
Disordered Region (DISPRO)
**********************************HLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA**********************************************************************************PEFFQNLSRGSGDLPVEVVVPRR***************************************************************************************INNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSIS************************************************************************************************************************************************RV*GE****************************RDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQFD*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSQPNKFTKPAKPTSQGQQSSSANASRSSSLSSHLAMVEMKQKILTSLSKLADxxxxxxxxxxxxxxxxxxxxxSLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGSDDQKSSPGGKAPEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLTKGKAGNISEKAVVILKKKAPALSDKELNPEFFQNLSRGSGDLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRSNRMGNSQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRAPDVERELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSxxxxxxxxxxxxxxxxxxxxxLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKYNGRTPFGERFAQSDGVAASTRGRGPSWRSDMSDAWDFTAYCASRNGQLGSRRAPGGGPVDSRSPKSEHDNDQVGGRRAWDKGTGPVRLGEGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVAIPELTAEAMGDDNVGQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQFDK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	896	2.2.26 [Sep-21-2011]
Q9T041	864	Microtubule-associated pr	yes	no	0.940	0.975	0.613	0.0
F4I6M4	821	Microtubule-associated pr	no	no	0.850	0.928	0.535	0.0

>sp|Q9T041|MAPT_ARATH Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2

 Score = 1033 bits (2670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/914 (61%), Positives = 669/914 (73%), Gaps = 71/914 (7%)

Query: 3   SQPNKFTKPAKPTSQGQQSSSA--NASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQI 60
           S P      AKPT   + SS A  + S S SL+S  AMVE+KQKILTS+SKLADRDT+QI
Sbjct: 2   STPTTSGSAAKPTRPARSSSLATRSCSNSGSLTSFQAMVELKQKILTSISKLADRDTYQI 61

Query: 61  AIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTK 120
           A+EDLEKTIQ+L+ E+LPM LNCLY+S +DPKPAVKKE + LL+ VC LH + T+ H+TK
Sbjct: 62  AVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVKKECLHLLSYVCSLHCDSTAAHLTK 121

Query: 121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGT-----VVGLFVKPLFEAMM 175
           II+ IVKRLKDSDSG+++ACRD+IG+LS +YL GKEE   T      VGLFVKPLFEAM 
Sbjct: 122 IIAQIVKRLKDSDSGVRDACRDTIGALSGIYLKGKEEGTNTGSASLAVGLFVKPLFEAMG 181

Query: 176 EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ 235
           EQNK VQSGA+MCMA+MVE A+ PPV +FQKLC RICKLLSN +F+AKASLLPVV SLSQ
Sbjct: 182 EQNKVVQSGASMCMARMVESAASPPVTSFQKLCPRICKLLSNSSFLAKASLLPVVSSLSQ 241

Query: 236 VGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEAC 295
           VGAIAPQSLE LL+SIH+CLGSTDW TRKAAA+ L+ALA HSS L+ +   ST+TVLE C
Sbjct: 242 VGAIAPQSLESLLESIHDCLGSTDWVTRKAAAETLTALASHSSGLIKEKTDSTITVLETC 301

Query: 296 RFDKIKPVRDSMNEALQLWKKIAGK-VDVGSDDQKSSPGGK--APEPGEDLKNLNPSDKR 352
           RFDKIKPVR+S+ EALQLWKKI+GK VD  SDD K S   +  + + GE   NL      
Sbjct: 302 RFDKIKPVRESVTEALQLWKKISGKYVDGASDDSKLSASEQLGSEKNGEKRSNL------ 355

Query: 353 AELSAKGPLNGSSPASASLTKGKAGNISEKAVVILKKKAPALSDKELNPEFFQNLSRGSG 412
           A+L  K   +GS+ +  S +KGK G   EKAV +LKKKAP LSDK+ NPEFFQ L R   
Sbjct: 356 ADLMKKEASDGSTLSPDSASKGK-GCFPEKAVGLLKKKAPVLSDKDFNPEFFQRLERRQS 414

Query: 413 DLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRSNRMGNSQTDDFSVSLNNKHRSIDRG 472
              VEVVVPRRC N    N+EEES   DL++ G SNR+ N+Q DD  V          +G
Sbjct: 415 ---VEVVVPRRCKN----NDEEESGLDDLNAMGSSNRLKNTQADDKQV----------KG 457

Query: 473 TAGGNGKDPRMRAPDVE-----RELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLMQL 527
              GNG   R    D       +E  G+ A  S TD+Q+EGSF +N+GNW AIQRQL+QL
Sbjct: 458 RFDGNGSQARTSGDDKAGVVNGKETPGHHAPVSNTDNQSEGSFTSNRGNWSAIQRQLLQL 517

Query: 528 ERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRGSNFAMGFEG 587
           ERQQ +LMNMLQ+F+GGSHDSMVTLE RVRGLER+VEDMARDLSISSGRR +N   GF  
Sbjct: 518 ERQQTNLMNMLQEFIGGSHDSMVTLEGRVRGLERIVEDMARDLSISSGRR-ANLTAGF-- 574

Query: 588 SNNRSLGKYNGFAEYSGTKYNGRTPFGERFAQSDGVAASTRGRGPSWRSDMSDAWDFTAY 647
                 GKYN FA Y   KYNGR P GER +Q+DG       RG  W SDM+D W    +
Sbjct: 575 ------GKYNSFANYPTGKYNGRAP-GERGSQTDGAM-----RGRMWNSDMADDWFIPPH 622

Query: 648 CASRNGQLGSRRAPGGGPVDSRSPKSE-HDNDQVG-GRRAWD-KGTGPVRLGEGPSARSV 704
            ASRNGQ G RR          SP+SE ++N+ +G GRR WD K +G +R GEGPSARSV
Sbjct: 623 AASRNGQAGPRR----------SPRSEQYENEHMGNGRRGWDNKASGTIRFGEGPSARSV 672

Query: 705 WQASKDEATLEAIRVAGEDSGTSRSARVAI-PELTAEAMGDD-NVGQERDPIWTSWTNAM 762
           WQASKDEATLEAIRVAGED    R  RVA+ PE  AEAMGDD N GQERDPIW SW+NAM
Sbjct: 673 WQASKDEATLEAIRVAGEDGAVPRPTRVAVAPE--AEAMGDDDNEGQERDPIWVSWSNAM 730

Query: 763 DAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLF 822
            +++VGD+D AYAEV+  GD  L++KLMD++GP +DQ+SNE+ANE L+ I QFLL+ +L+
Sbjct: 731 HSLRVGDIDAAYAEVLCAGDQHLVIKLMDKTGPSLDQMSNEIANEALNFISQFLLDHSLY 790

Query: 823 DICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLLQ 882
           DICLSW QQL+ELVL++G    G+PMELK E+L NL +A +TMDPPEDWEGPAP+QL++Q
Sbjct: 791 DICLSWSQQLLELVLQDGADTFGVPMELKTEILYNLQDACSTMDPPEDWEGPAPEQLVVQ 850

Query: 883 LASAWEIELQQFDK 896
           LAS WEI+LQQFDK
Sbjct: 851 LASVWEIDLQQFDK 864

Plant-specific microtubule-associated protein (MAP) that regulates the orientation of cortical microtubules and the direction of organ growth.
Arabidopsis thaliana (taxid: 3702)

>sp|F4I6M4|SP2L_ARATH Microtubule-associated protein SPIRAL2-like OS=Arabidopsis thaliana GN=SP2L PE=2 SV=1

 Score =  841 bits (2172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/883 (53%), Positives = 599/883 (67%), Gaps = 121/883 (13%)

Query: 38  MVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTL--SQESLPMLLNCLYESSNDPKPAV 95
           MVE+KQ+ILTSLS+L DRDT+QIA++DLEK + ++  S E LP+LL+CL++SS+D K  V
Sbjct: 34  MVELKQRILTSLSRLGDRDTYQIAVDDLEKIVVSVPDSPEILPVLLHCLFDSSSDLKAPV 93

Query: 96  KKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK 155
           K+ES+RLL+ +C  +++L+ + + KIISHIVKRLKD+D+G+++ACRD+IGSLS  +L  K
Sbjct: 94  KRESIRLLSFLCLSYTDLSFSQLAKIISHIVKRLKDADNGVRDACRDAIGSLSAQFLKEK 153

Query: 156 EENNG-----TVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCAR 210
           E  NG     ++VGLF KPLFEAM EQNK +QSGAA+CM KM++ A++PPV AFQKLC R
Sbjct: 154 EVENGNYVGSSLVGLFAKPLFEAMAEQNKSLQSGAAICMGKMIDSATEPPVAAFQKLCPR 213

Query: 211 ICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADAL 270
           I KLL++ N++ KASLLPVVGSLSQVGAIAPQSLE LL SIHECLG T+W TRKAAAD L
Sbjct: 214 ISKLLNSPNYITKASLLPVVGSLSQVGAIAPQSLESLLHSIHECLGCTNWVTRKAAADVL 273

Query: 271 SALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGS-DDQK 329
            +LA+HSS+LV D   STLT LEACRFDKIKPVR+S++EAL +WK IAGK + G+ DDQK
Sbjct: 274 ISLAVHSSSLVADKTDSTLTALEACRFDKIKPVRESLSEALNVWKNIAGKGESGTMDDQK 333

Query: 330 SSPGGKAPEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLT-------KGKAGNISEK 382
                            + S ++  L   G  +  S   A L           + +   K
Sbjct: 334 -----------------DVSSEQCILERNGETDSVSCEEAGLVMQGSCDGLSSSSDSISK 376

Query: 383 AVVILKKKAPALSDKELNPEFFQNL-SRGSGDLPVEVVVPRRCLNSSNSNNEEESDPSDL 441
           AV+IL+KKAP L+ K+LNPEFFQ L  RGSGD+PVEV++P R  NSSNSN E+ESD +  
Sbjct: 377 AVLILRKKAPRLTGKDLNPEFFQKLEKRGSGDMPVEVILPSRQKNSSNSNTEDESDANTS 436

Query: 442 DSKGRSN---RMGNSQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRAPDVERELSGNRAG 498
             + RSN   R     T         + + +D    GG   + R+RA D      G+   
Sbjct: 437 VLRSRSNGLCRTAGVHTKQRHFGDFAREKWVDERMNGG---ESRLRAFD------GDHTE 487

Query: 499 FSKTDSQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRG 558
             + D+        N+GNW  +QRQL+ LERQQ H+MNMLQDFMGGSHD M++LENRVRG
Sbjct: 488 VIQADTS------ENRGNWPPLQRQLLHLERQQTHIMNMLQDFMGGSHDGMISLENRVRG 541

Query: 559 LERVVEDMARDLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKYNGRTPFGERFA 618
           LER+VE+M+R++SI SG RG   A                                    
Sbjct: 542 LERIVEEMSREMSIQSGARGKATA------------------------------------ 565

Query: 619 QSDGVAASTRGRGPSWRSDMSDAWDFTAYC-ASRNGQLGSRRAPGGGPVDSRSPKSEHDN 677
                         SWRSD+ D WD   Y  +SRN Q  +R+  G GP           +
Sbjct: 566 --------------SWRSDV-DGWDSPNYGPSSRNTQTSTRKIRGTGP-----------S 599

Query: 678 DQVGG-RRAWDKGTGPVRLGEGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVAIPE 736
           +Q G  RRAWDK +  +RLGEGPSARSVWQASKDEATLEAIRVAGED GTSR+ RV+IPE
Sbjct: 600 EQSGNSRRAWDKSSVAIRLGEGPSARSVWQASKDEATLEAIRVAGEDCGTSRNRRVSIPE 659

Query: 737 LTAEAM---GDDNV-GQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDR 792
             AEAM    DDN  GQ+ DPIWT W+N++ A++VGD D+A+AEV+STGDD LLVKLMD+
Sbjct: 660 --AEAMMDEDDDNRGGQQGDPIWTCWSNSVHALRVGDTDSAFAEVLSTGDDHLLVKLMDK 717

Query: 793 SGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKK 852
           +GPV+DQLS+++ NE +H+I QFLL+  L+DICLSWIQQL+E+ +ENG   +GIP+ELKK
Sbjct: 718 TGPVLDQLSSDMGNEAIHSIAQFLLDHTLYDICLSWIQQLLEVSVENGADFMGIPLELKK 777

Query: 853 ELLLNLHEASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQFD 895
           ELLLNLHEA +T DPPEDWEG APD LL++LAS W IE+Q FD
Sbjct: 778 ELLLNLHEALSTTDPPEDWEGLAPDHLLVELASNWNIEIQHFD 820

Plant-specific microtubule-associated protein (MAP) that regulates the orientation of cortical microtubules and the direction of organ growth.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	896
359494115	904	PREDICTED: microtubule-associated protei	0.982	0.973	0.708	0.0
255563981	936	conserved hypothetical protein [Ricinus	0.983	0.941	0.721	0.0
449519460	926	PREDICTED: microtubule-associated protei	0.982	0.950	0.658	0.0
356569846	923	PREDICTED: microtubule-associated protei	0.950	0.923	0.679	0.0
357459403	924	Microtubule-associated protein TORTIFOLI	0.950	0.922	0.636	0.0
28200788	862	potyviral helper component protease-inte	0.902	0.938	0.638	0.0
42567178	864	Microtubule-associated protein TORTIFOLI	0.940	0.975	0.613	0.0
4490702	826	hypothetical protein [Arabidopsis thalia	0.901	0.978	0.622	0.0
297799280	864	hypothetical protein ARALYDRAFT_913839 [	0.907	0.940	0.621	0.0
110736009	796	hypothetical protein [Arabidopsis thalia	0.868	0.977	0.613	0.0

>gi|359494115|ref|XP_002281360.2| PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Vitis vinifera]

 Score = 1291 bits (3341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/920 (70%), Positives = 761/920 (82%), Gaps = 40/920 (4%)

Query: 1   MSSQPNKFTKPAKPTSQGQQSSSANASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQI 60
           M+S   K +KPAKP +    S S+  S SSS+S+HLAMVE+KQ+ILTSLSKL+DRDTHQI
Sbjct: 1   MASGGTKSSKPAKPPNPSSTSQSSVRSTSSSVSTHLAMVELKQRILTSLSKLSDRDTHQI 60

Query: 61  AIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT 119
           A++DL   IQ LS +S + +LLNCLYE+S+DPKP VKKES+RLLAL+C  H + TS+H+T
Sbjct: 61  AVDDLHNLIQNLSTDSGVSILLNCLYEASSDPKPLVKKESLRLLALLCTSHPDSTSSHLT 120

Query: 120 KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNG-----TVVGLFVKPLFEAM 174
           KIISHIV+RLKDSD+G+++ACRD+IG+LS LYL G           +VV LFVKPLFEAM
Sbjct: 121 KIISHIVRRLKDSDTGVRDACRDAIGTLSSLYLKGDGGGGDNGGLGSVVSLFVKPLFEAM 180

Query: 175 MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS 234
           +EQNKGVQSGAAMC+AKMVECASDPPV AFQKLC+R+CKLL+N NF+AKA+LLPVVGSLS
Sbjct: 181 IEQNKGVQSGAAMCLAKMVECASDPPVGAFQKLCSRVCKLLNNPNFLAKAALLPVVGSLS 240

Query: 235 QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEA 294
           QVGAIAPQSLE +LQSIH+CLGS DWATRKAAAD LS LA+HS+NL++DGATSTL  LEA
Sbjct: 241 QVGAIAPQSLEAVLQSIHDCLGSPDWATRKAAADTLSTLAMHSNNLIMDGATSTLAALEA 300

Query: 295 CRFDKIKPVRDSMNEALQLWKKIAGKVDVGSDDQKSSPGGKAPEPGE-----DLKNLNPS 349
           CRFDKIKPVRDSM EALQLWKK+AGK D  SDDQK++    + EP E       K  NP 
Sbjct: 301 CRFDKIKPVRDSMTEALQLWKKVAGKGDGVSDDQKAT----SHEPAEFSDKNGPKVSNPG 356

Query: 350 DKRAELSAKGPLNGSSPASASLTKGKAGNISEKAVVILKKKAPA-LSDKELNPEFFQNL- 407
           +++AE S K   NGSSPA+ S++K K G+I +KAV ILKKK PA L+DKELNPEFFQ L 
Sbjct: 357 ERKAEASGKDSSNGSSPANDSVSKTKGGSIPDKAVGILKKKVPAALTDKELNPEFFQKLE 416

Query: 408 SRGSGDLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRSNRMGNSQTDDFSVSLNNKHR 467
           +RGS DLPVEVVVPRRCLNS+NS+NEEES+P+D D +GRSN M   + DD      ++  
Sbjct: 417 TRGSDDLPVEVVVPRRCLNSANSHNEEESEPNDADLRGRSNLM---EPDDVRDKWADERV 473

Query: 468 SIDRGTAGGNGKDPRMRAPDV-------ERELSGNRAGFSKTDSQAEGSFINNKGNWLAI 520
                    NGKD R RA D+       +RE SG+R GFSKTD Q+EGSF+NNKGNWLAI
Sbjct: 474 ---------NGKDSRTRAFDIDDRIDINQRESSGSRVGFSKTDVQSEGSFMNNKGNWLAI 524

Query: 521 QRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRGSN 580
           QRQL+QLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRG N
Sbjct: 525 QRQLLQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRGGN 584

Query: 581 FAMGFEGSNNRSLGKYNGFAEYSGTKY----NGRTPFGERFAQSDGVAASTRGRGPSWRS 636
           F +GFEGS+NRSLGKYNG+ +YS  K     +GR PFGERF  SDG+A+  RGRGP WRS
Sbjct: 585 FMVGFEGSSNRSLGKYNGYPDYSSAKLGRGSDGRIPFGERFGPSDGIASGMRGRGPPWRS 644

Query: 637 DMSDAWDFTAYCASRNGQLGSRRAPGGGPVDSRSPKSEHDNDQVGGRRAWDKGTGPVRLG 696
           DM++AWDF  Y A +NGQ+GSRRA   GPVD RSPK+EH++DQVG RRAWDKG  PVR G
Sbjct: 645 DMAEAWDFPTYGAPKNGQMGSRRALVSGPVDGRSPKAEHESDQVGNRRAWDKGAAPVRFG 704

Query: 697 EGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVAIPELTAEAMGDDNVGQERDPIWT 756
           EGPSARSVWQASKDEATLEAIRVAGEDSG +R+ARVA+PELTAEAMGDDNV  ERDP+WT
Sbjct: 705 EGPSARSVWQASKDEATLEAIRVAGEDSGATRTARVAMPELTAEAMGDDNVVPERDPVWT 764

Query: 757 SWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFL 816
           SW+NAMDA+ VGD+D+AYAEV+STGDD LLVKLMDRSGPV+DQLSN+VA+E+LHA+GQFL
Sbjct: 765 SWSNAMDALHVGDMDSAYAEVLSTGDDLLLVKLMDRSGPVIDQLSNDVASEILHAVGQFL 824

Query: 817 LEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAP 876
           LEQNLFDICLSWIQQLV++V+ENGP ++GIP+E+K+ELLLNL+EAS T DPPEDWEG  P
Sbjct: 825 LEQNLFDICLSWIQQLVDVVMENGPDIMGIPIEVKRELLLNLNEASATTDPPEDWEGATP 884

Query: 877 DQLLLQLASAWEIELQQFDK 896
           DQLLLQLASAW I+LQQ +K
Sbjct: 885 DQLLLQLASAWGIDLQQLEK 904

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563981|ref|XP_002522990.1| conserved hypothetical protein [Ricinus communis] gi|223537802|gb|EEF39420.1| conserved hypothetical protein [Ricinus communis]

 Score = 1239 bits (3207), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/933 (72%), Positives = 758/933 (81%), Gaps = 52/933 (5%)

Query: 1   MSSQPNKFTKPA-KPTSQGQQSSSANASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQ 59
           MS+Q  K  +P  KP++Q Q +S     RSSSLS+HLAMVE+KQ+I+TSLSKLADRDTHQ
Sbjct: 1   MSTQAPKSLRPTTKPSNQNQPNS-----RSSSLSTHLAMVELKQRIITSLSKLADRDTHQ 55

Query: 60  IAIEDLEKTIQTLSQESLPMLLNCLYESSN---DPKPAVKKESVRLLALVCELHSELTST 116
           IAIEDL    Q++S E+LPMLLN LY+S +   + KP+VKKES+ LL+L C+ H +LT  
Sbjct: 56  IAIEDLHSITQSISPEALPMLLNSLYDSLSDSSNSKPSVKKESLHLLSLTCQSHRDLTLP 115

Query: 117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENN-------------GTVV 163
           H+TKIISHIVKRLKDSDS +K+AC D+IG LS LYL     N              G++V
Sbjct: 116 HLTKIISHIVKRLKDSDSSVKDACGDAIGVLSTLYLKSGNGNGGGGEGGGGDNNAVGSMV 175

Query: 164 GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA-----------SDPPVVAFQKLCARIC 212
           GLFV+PLFEAM EQNKGVQSGAA+CMAKMV+ A           S+ P  AFQKLC RIC
Sbjct: 176 GLFVRPLFEAMGEQNKGVQSGAAVCMAKMVDSAAMEANDGARNGSNVPTGAFQKLCPRIC 235

Query: 213 KLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSA 272
           KLL+ QNF AKA+LL VV SL+QVGAIAPQ LEPLLQSIH+CLGSTDWATRKAAADALSA
Sbjct: 236 KLLNGQNFQAKAALLGVVTSLAQVGAIAPQGLEPLLQSIHDCLGSTDWATRKAAADALSA 295

Query: 273 LALHSSNLVIDG-ATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGS-DDQKS 330
           LALHSS+L+ D  A+STLTVLE+CRFDKIKPVRDSM EALQ WKKIAGK + G  DDQK+
Sbjct: 296 LALHSSSLITDEVASSTLTVLESCRFDKIKPVRDSMTEALQQWKKIAGKAEDGVLDDQKA 355

Query: 331 SPGGKAPEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLTKGKAGNISEKAVVILKKK 390
           S      E   D K  NP D++ E  AK    GSSP   S+ K KAG+I +KAVVILKKK
Sbjct: 356 S---SCAESSSD-KIPNPDDQKTESLAKDSTRGSSPNMDSVPKSKAGSIPDKAVVILKKK 411

Query: 391 APALSDKELNPEFFQNL-SRGSGDLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRSNR 449
           APAL+DK+LNPEFFQ L +RGSGDLPVEVVV RRC+ SSN N EEE +  D +S+GRSNR
Sbjct: 412 APALTDKDLNPEFFQKLETRGSGDLPVEVVVSRRCITSSNLN-EEEPELHDSESRGRSNR 470

Query: 450 MGNSQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRA-----PDVE-RELSGNRAGFSKTD 503
           + NSQ+DD   S + K+R+I+RG AG   KD R RA     PDV  RE SG+RAGFSK+D
Sbjct: 471 LANSQSDDLHGSFS-KYRNIERGNAG---KDARNRAFGDDRPDVNPRESSGSRAGFSKSD 526

Query: 504 SQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVV 563
            Q+EGSFIN+KGNWLAIQRQL+QLERQQAHLMNMLQDFMGGSHDSM+TLENRVRGLER+V
Sbjct: 527 GQSEGSFINSKGNWLAIQRQLLQLERQQAHLMNMLQDFMGGSHDSMITLENRVRGLERIV 586

Query: 564 EDMARDLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKYNGRTPFGERFAQSDGV 623
           EDMARDLSISSGRRGSNF +GFEGSN R LGKYNGF+EYS  KYN R PFGERF QSD  
Sbjct: 587 EDMARDLSISSGRRGSNFPIGFEGSN-RPLGKYNGFSEYSNAKYNARVPFGERFTQSDVT 645

Query: 624 AASTRGRGPSWRSDMSDAWDFTAYCASRNGQLGSRRAPGGGPVDSRSPKSEHDNDQVGGR 683
           A+  RGRGP+WRSDMSDAWDF AY ASRNG + SRRAP GG +D RSPKSE ++DQVG R
Sbjct: 646 ASGMRGRGPNWRSDMSDAWDFPAYGASRNGPISSRRAPSGGSIDGRSPKSEPESDQVGSR 705

Query: 684 RAWDKGTGPVRLGEGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVAIPELTAEAMG 743
           RAWDKG GP+R GEGPSARSVWQASKDEATLEAIRVAGED+G SR+ARVAIPE+TAEAMG
Sbjct: 706 RAWDKGAGPLRFGEGPSARSVWQASKDEATLEAIRVAGEDNGLSRTARVAIPEMTAEAMG 765

Query: 744 DDNVGQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNE 803
           DDN G ERDPIWTSWTNAMDA+++GD+DTAYAEVVSTGDDFLLVKLMDRSGPV+DQLSNE
Sbjct: 766 DDNGGPERDPIWTSWTNAMDALKMGDMDTAYAEVVSTGDDFLLVKLMDRSGPVIDQLSNE 825

Query: 804 VANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEAST 863
            A EVLHAI QFLLEQNLFDICLSWI QLVE+VLENGP VLGIPMELKKELLLNLHEAST
Sbjct: 826 TACEVLHAIVQFLLEQNLFDICLSWIHQLVEIVLENGPDVLGIPMELKKELLLNLHEAST 885

Query: 864 TMDPPEDWEGPAPDQLLLQLASAWEIELQQFDK 896
            +DPPEDWEG APDQLL+QLASAW IELQQFDK
Sbjct: 886 AIDPPEDWEGAAPDQLLMQLASAWRIELQQFDK 918

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519460|ref|XP_004166753.1| PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Cucumis sativus]

 Score = 1181 bits (3056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/939 (65%), Positives = 732/939 (77%), Gaps = 59/939 (6%)

Query: 1   MSSQPNKFTKPAKPTSQGQQSSSANASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQI 60
           MSSQ  K ++P+KP +Q   S   + S +SSLSSHLAMVE+KQ+ILT+LSKLADRDTHQI
Sbjct: 1   MSSQAPKSSRPSKPPNQ---SPPTSRSSASSLSSHLAMVELKQRILTALSKLADRDTHQI 57

Query: 61  AIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTK 120
           AI+DLEK IQ++S E++PMLLNCLY+SS DPKPAVKKES+RLL +VC  HS+ TSTH+TK
Sbjct: 58  AIDDLEKIIQSISPEAIPMLLNCLYDSSADPKPAVKKESLRLLTVVCASHSDSTSTHLTK 117

Query: 121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGT------VVGLFVKPLFEAM 174
           II+HI++R+KDSDSG+K++CRD+IG+LS  YL G     G       VV LFVKPLFEAM
Sbjct: 118 IIAHIIRRVKDSDSGVKDSCRDAIGALSAQYLKGDSSGGGDNGGLGSVVALFVKPLFEAM 177

Query: 175 MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS 234
            EQNKGVQSGAA+CMAKMVECA+ PP++AFQKLC RICKLL+N NF+AKASLLPVV +LS
Sbjct: 178 GEQNKGVQSGAALCMAKMVECAASPPIMAFQKLCPRICKLLNNPNFLAKASLLPVVSNLS 237

Query: 235 QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEA 294
           QVGAI  QSLE LL SIHE LGSTDWATRKAAADALSALALHSSN + DG  ST  VLEA
Sbjct: 238 QVGAIGQQSLENLLPSIHELLGSTDWATRKAAADALSALALHSSNFITDGGASTFAVLEA 297

Query: 295 CRFDKIKPVRDSMNEALQLWKKIAGKVDVGSDDQKSSPGGKAPEPGEDLKNLNPSDKRAE 354
           CRFDKIKPVRDSM EALQLWKK+AGK D  ++ Q +S  G++ EP E       S K   
Sbjct: 298 CRFDKIKPVRDSMTEALQLWKKLAGKTDGAAESQNASQDGESHEPAE------LSQKSDM 351

Query: 355 LSAKGPLNGSS----------PASASLTKGKAGNISEKAVVILKKKAPALSDKELNPEFF 404
            +A  P  G S          P   S  K K G+IS+KA VILKKK PAL+DKELNPEFF
Sbjct: 352 TTANSPQGGRSLDKDKSEEPIPVLNSALKTKCGSISDKAAVILKKKVPALTDKELNPEFF 411

Query: 405 QNL-SRGSGDLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRSNRMGNSQTDDFSVSLN 463
           Q L +RGSGDLPVEVV+PRR  NSSN+N +E+S+P +  + GRS R+ N+ TDDF  + N
Sbjct: 412 QKLETRGSGDLPVEVVLPRRHANSSNTN-DEKSEPDNSTAGGRSTRVENTNTDDFQRAFN 470

Query: 464 NKHRSIDRGTAGG-----------------NGKDPRMRAPDV-------ERELSGNRAGF 499
            K R  +R                      NG+D R RA +V       +RE SG R+ F
Sbjct: 471 -KFRDSERAQMAKMRDYDDLERDKWHEGKINGRDSRTRAYNVNDQNDVSQRESSGARSDF 529

Query: 500 SKTDSQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGL 559
           SK D+Q+E SFIN+KG+W AIQRQL+QLERQQAHLMNMLQDFMGGSHDSM+TLENRVRGL
Sbjct: 530 SKMDAQSESSFINSKGSWSAIQRQLLQLERQQAHLMNMLQDFMGGSHDSMITLENRVRGL 589

Query: 560 ERVVEDMARDLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKY----NGRTPFGE 615
           ERVVEDMARDLS+SSGRRG NF +GFEGS+NR LGKY+GF++Y   K+    +GR PFGE
Sbjct: 590 ERVVEDMARDLSVSSGRRG-NFPLGFEGSSNRHLGKYSGFSDYPVAKFGRNNDGRVPFGE 648

Query: 616 RFAQSDGVAASTRGRGPSWRSDMSDAWDFTAYCASRNGQLGSRRAPGGGPVDSRSPKSEH 675
           RF QS+G+ A+ RGR  +WR DM++ WD+ AY  SRNGQ+GS+R+     +D+RS KSE 
Sbjct: 649 RFVQSEGIGANMRGRSAAWRPDMNETWDYPAYM-SRNGQMGSKRSLDAS-IDNRSSKSEQ 706

Query: 676 DNDQVGGRRAWDKGTGPVRLGEGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVAIP 735
           ++DQ G RRAWDKG GP+RLGEGPSARSVWQASKDEATLEAIRVAGED+G SR+ +VAIP
Sbjct: 707 ESDQGGNRRAWDKGAGPLRLGEGPSARSVWQASKDEATLEAIRVAGEDNGISRTPKVAIP 766

Query: 736 ELTAEAMGDDNVGQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGP 795
           ELTAEA+ +DN GQERDP+WTSWTNAMDA+Q GD+D AYAEV+STGDD LL+KLM+R+GP
Sbjct: 767 ELTAEALVEDNAGQERDPVWTSWTNAMDALQAGDMDMAYAEVLSTGDDILLIKLMERTGP 826

Query: 796 VVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELL 855
            VDQ+SNE+  E+  A+GQFLLEQNLFDICL WIQQLVE+VL+NGP  +GIPME+KKELL
Sbjct: 827 AVDQISNEIVIEIFRAVGQFLLEQNLFDICLFWIQQLVEIVLDNGPDCVGIPMEVKKELL 886

Query: 856 LNLHEASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQF 894
           LN HEAS+TMDPPEDWEG  PDQLL QLASAW I++ Q 
Sbjct: 887 LNFHEASSTMDPPEDWEGALPDQLLSQLASAWRIDIGQL 925

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569846|ref|XP_003553106.1| PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Glycine max]

 Score = 1128 bits (2918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/908 (67%), Positives = 712/908 (78%), Gaps = 56/908 (6%)

Query: 35  HLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPA 94
           HLAMVE+KQKILTSLSKL+DRDTHQIA+EDLEKTI  LS +++PM+LNCLY+++ DPKPA
Sbjct: 26  HLAMVELKQKILTSLSKLSDRDTHQIAVEDLEKTISGLSPDAIPMILNCLYDAATDPKPA 85

Query: 95  VKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG 154
           VK++++RLLA VC  HS+  + H+TKII+H+V+RLKD+DS +++ACRD++G+L+  YL G
Sbjct: 86  VKRDALRLLAAVCGAHSDAAAAHLTKIIAHVVRRLKDADSAVRDACRDTVGALAAQYLKG 145

Query: 155 KEENNGTVVG----LFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDP-----PVVAFQ 205
                G  VG    LFVKPLFEAM EQNKGVQ+GAA+CMAKMVECA        PV AFQ
Sbjct: 146 DGGGGGGGVGTVVGLFVKPLFEAMGEQNKGVQAGAAVCMAKMVECAGGSGGEAVPVAAFQ 205

Query: 206 KLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKA 265
           KLC RI KLL++ NFMAKA++LPVV SLSQVGAIAPQSLE LL SIHECL STDWATRKA
Sbjct: 206 KLCPRIYKLLNSPNFMAKAAILPVVASLSQVGAIAPQSLEHLLPSIHECLSSTDWATRKA 265

Query: 266 AADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGS 325
           AA+ALS+LALHSS+LV D A  TL VLEACRFDKIKPVRDS+NEALQLWKKIAGK D   
Sbjct: 266 AAEALSSLALHSSSLVTDRAAPTLAVLEACRFDKIKPVRDSINEALQLWKKIAGKGDGSP 325

Query: 326 DDQK-SSPGGK---APEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASL--TKGKAGNI 379
           DD K SS GG          D K +N  +++ +     P+ GSS +S+++  TK KA +I
Sbjct: 326 DDSKPSSDGGNESAISSEASDPKKVNLDERKTD----SPVKGSSTSSSNMDSTKAKAASI 381

Query: 380 SEKAVVILKKKAPALSDKELNPEFFQNLSR-GSGDLPVEVVVPRRCLNSSNSNNEEESDP 438
           SEKAVVILKKK P LSDKELNPEFFQ L R GS DLPVEVVVPRR LNSSNSNNEEES+ 
Sbjct: 382 SEKAVVILKKKPPVLSDKELNPEFFQKLERRGSDDLPVEVVVPRRGLNSSNSNNEEESEA 441

Query: 439 SDLDSKGRSNRMGNSQTDDFSVSLNNKHRSIDRGTAGG-------------------NGK 479
           +  DSK R N +GN   DD   S +NK+R  +RG  G                    N K
Sbjct: 442 NAKDSKERINSVGNIPNDDHGSS-SNKYRIFERGNDGNSKQRNYDDFGHDRFSERRVNTK 500

Query: 480 DPRMRAPDV-------ERELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLMQLERQQA 532
           + R +A D        +R+ S N AGFSKTD Q+E  F NN+ NWLAIQRQL+QLERQQ 
Sbjct: 501 ELRTKAYDTDGRTENDQRDGSANAAGFSKTDGQSEVPFSNNRANWLAIQRQLLQLERQQV 560

Query: 533 HLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRGSNFAMGFEGSNNRS 592
           HLMNMLQDFMGGSHDSMVTLENRVRGLER+VEDM+RDLSISSGRR  NFA GFEGS+NR 
Sbjct: 561 HLMNMLQDFMGGSHDSMVTLENRVRGLERIVEDMSRDLSISSGRR--NFA-GFEGSSNRP 617

Query: 593 LGKYNGFAEYSGTKY----NGRTPFGERFAQSDGVAASTRGRGPSWRSDMSDAWDFTAYC 648
             KYNGF +YS +KY    +GR PFGERFAQSDG +   RGRGPSWRSDMS+ WD + Y 
Sbjct: 618 SSKYNGFNDYSSSKYGRGGDGRIPFGERFAQSDGNSLGMRGRGPSWRSDMSEGWDHSGYG 677

Query: 649 ASRNGQLGSRRAPGGGPVDSRSPKSEHDNDQVGGRRAWDKGTGPVRLGEGPSARSVWQAS 708
           ASRNGQ+ SRRA GG   D RSPKS H+NDQ G RRAWDK   P+RLGEGPSARSVWQAS
Sbjct: 678 ASRNGQMSSRRAFGGSSADGRSPKSVHENDQAGNRRAWDKAAMPIRLGEGPSARSVWQAS 737

Query: 709 KDEATLEAIRVAGEDSGTSRSARVAIPELTAEAMGDDNVGQERDPIWTSWTNAMDAIQVG 768
           KDEATLEAIRVAGED+GTSR+ RVAIPE+TAEAM DDNVGQERD IWTSW+NAMDA+QVG
Sbjct: 738 KDEATLEAIRVAGEDNGTSRATRVAIPEMTAEAMADDNVGQERDAIWTSWSNAMDALQVG 797

Query: 769 DLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSW 828
           DLD+A+AEV+S GDD LLVKLMD++GPV+DQLS+EVA E ++AIGQFLL+QN++DICLSW
Sbjct: 798 DLDSAFAEVLSAGDDILLVKLMDKTGPVIDQLSSEVACETVNAIGQFLLDQNMYDICLSW 857

Query: 829 IQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLLQLASAWE 888
           IQQL+E+VLENGP    IPME+KKELLLNLHEAST  DP E WEG  PDQLLLQLASAWE
Sbjct: 858 IQQLLEIVLENGPDTFDIPMEVKKELLLNLHEAST--DPAETWEGVQPDQLLLQLASAWE 915

Query: 889 IELQQFDK 896
           I+LQQ DK
Sbjct: 916 IDLQQHDK 923

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459403|ref|XP_003599982.1| Microtubule-associated protein TORTIFOLIA1 [Medicago truncatula] gi|355489030|gb|AES70233.1| Microtubule-associated protein TORTIFOLIA1 [Medicago truncatula]

 Score = 1087 bits (2811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/913 (63%), Positives = 690/913 (75%), Gaps = 61/913 (6%)

Query: 35  HLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPA 94
           HLAMVE+KQKILTSLSKL+DRDTHQIA+EDLEKTI +L+ +++PM+LNCLYE+ +DPKP+
Sbjct: 22  HLAMVELKQKILTSLSKLSDRDTHQIALEDLEKTILSLTPDAIPMILNCLYEAVSDPKPS 81

Query: 95  VKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG 154
           +K ES+RLL+ VC  H   TS H+ KIISHIVKRLKD+DS  ++ACRDSIGS++ LYL G
Sbjct: 82  IKNESLRLLSFVCSSHPHSTSPHLPKIISHIVKRLKDTDSASRDACRDSIGSIAALYLRG 141

Query: 155 KEENNGT------VVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC---------ASDP 199
           +   N        +VGLFVKPLFEAM EQNK VQ GAA+CMAKMVE          A+  
Sbjct: 142 ENNGNNGSNGNGSLVGLFVKPLFEAMGEQNKAVQGGAAICMAKMVEMTAAVEEGGGAAVV 201

Query: 200 PVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTD 259
           PV AFQK+C RICKL++N NF+AKA++LPVV +LSQ GAIAPQSL+ LL SIH+CL S+D
Sbjct: 202 PVGAFQKMCPRICKLINNPNFLAKAAILPVVSALSQAGAIAPQSLDNLLSSIHDCLSSSD 261

Query: 260 WATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAG 319
           WATRKAAA+ALS+LALHSS+L+ D  T T+T+LEACR DKI+PVRDSM EAL LWKKIAG
Sbjct: 262 WATRKAAAEALSSLALHSSSLITDKTTPTVTLLEACRVDKIRPVRDSMTEALDLWKKIAG 321

Query: 320 KVDVGSDDQKSSPGGKAPEPG-----EDLKNLNPSDKRAELSAKGPLNGSSPASASLTKG 374
           K     D +  S  G  PEP       DLKN+NP +++ + S K  L  SS  + S +K 
Sbjct: 322 KDGSSHDSKPLSSDGGNPEPAVLTETSDLKNVNPDERKTDPSVKD-LPTSSSNTDSNSKA 380

Query: 375 KAGNISEKAVVILKKKAPALSDKELNPEFFQNLSRGS-GDLPVEVVVPRRCLNSSNSNNE 433
           KA +ISEKAVVILKKK P L+DK LNPEFFQNL R    DLPVEVVVPR+CLNSS+SNN+
Sbjct: 381 KAASISEKAVVILKKKPPVLNDKVLNPEFFQNLERRDLDDLPVEVVVPRKCLNSSSSNND 440

Query: 434 EESDPSDLDSKGRSNRMGNSQTDDFSVSLNNKHRSIDRGTAGG----------------- 476
           EES  +  DS  R+N  GN   D F  S+NNK+  ++RG  G                  
Sbjct: 441 EESKATAKDSNERTNATGNVPNDGFHGSVNNKYHGLERGNDGNSRQRNYEDFAQDRYYER 500

Query: 477 --NGKDPRMRAPDV-------ERELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLMQL 527
             N K+ R +  D        +R+ S N AGFS+ D Q+E  F NN+GN LAIQRQL QL
Sbjct: 501 RMNAKELRTKTNDTIDRSENDQRDGSANIAGFSRADGQSEVPFSNNRGNLLAIQRQLTQL 560

Query: 528 ERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRGSNFAMGFEG 587
           ERQQ HLMNMLQDFMGGSHDSMVTLENRVRGLER+VEDM +DLSISSGRR       FEG
Sbjct: 561 ERQQGHLMNMLQDFMGGSHDSMVTLENRVRGLERIVEDMLQDLSISSGRR-------FEG 613

Query: 588 SNNRSLGKYNGFAEYSGTKY----NGRTPFGERFAQSDGVAASTRGRGPSWRSDMSDAWD 643
           S+ R   KYNGF EYS +KY    +GR PF ERF Q+DG A   RGRGPSWRSDM + WD
Sbjct: 614 SSGRPSSKYNGFNEYSNSKYGRGGDGRIPFNERFTQTDGNALGMRGRGPSWRSDMPEGWD 673

Query: 644 FTAYCASRNGQLGSRRAPGGGPVDSRSPKSEHDNDQVGGRRAWDKGTGPVRLGEGPSARS 703
           F  Y ASRNGQ+ SRRA GG  VD RSPKS H++DQ G RRAW+K   P+RLGEGPSARS
Sbjct: 674 FPGYGASRNGQISSRRAFGGSSVDGRSPKSVHESDQGGSRRAWEKAAMPIRLGEGPSARS 733

Query: 704 VWQASKDEATLEAIRVAGEDSGTSRSARVAIPELTAEAMGDDNVGQERDPIWTSWTNAMD 763
           VWQASKDEATLEAIRVAGED+GTSR+ RVA+PE+TAEAM DD+VGQERD IWTSW+NA D
Sbjct: 734 VWQASKDEATLEAIRVAGEDNGTSRATRVAVPEMTAEAMADDSVGQERDAIWTSWSNAFD 793

Query: 764 AIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFD 823
           A+Q GD+D+A+AEV+STGDD LLVKLMDR+GPV+++LS+E+A E+L+AI QFLLEQ+LF+
Sbjct: 794 ALQAGDIDSAFAEVLSTGDDRLLVKLMDRTGPVINELSSEIACEILYAISQFLLEQDLFN 853

Query: 824 ICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLLQL 883
           ICLSWIQQLVE++ ENGP   G+PME+K++LL NLH+AST  D  E WEG  PDQLLLQL
Sbjct: 854 ICLSWIQQLVEVLFENGPDTFGVPMEVKEDLLRNLHDAST--DTAEGWEGVPPDQLLLQL 911

Query: 884 ASAWEIELQQFDK 896
           AS WEI+LQQ DK
Sbjct: 912 ASGWEIDLQQHDK 924

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28200788|emb|CAD45375.1| potyviral helper component protease-interacting protein 2 [Solanum tuberosum subsp. andigenum]

 Score = 1079 bits (2791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/882 (63%), Positives = 665/882 (75%), Gaps = 73/882 (8%)

Query: 34  SHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKP 93
           +H AM+E+KQ+ILTS+SKL+DRDTHQIA+EDLEK IQTLS + + MLLNCLY++SNDPKP
Sbjct: 35  THFAMIELKQRILTSISKLSDRDTHQIAVEDLEKIIQTLSNDGVSMLLNCLYDASNDPKP 94

Query: 94  AVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLN 153
           AVKKE++RLL  VC  H +  +TH+TKII +IVKRLKDSDSG+++ACRD+IGSLS LYL 
Sbjct: 95  AVKKETLRLLPTVCASHGDSAATHLTKIIGNIVKRLKDSDSGVRDACRDAIGSLSSLYLK 154

Query: 154 GKEENNG--TVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARI 211
           G+ E+ G  +VV LFVKPLFEAM E +K VQSGAA+CMAK+VECASDPPV++FQKLC RI
Sbjct: 155 GEAESGGIGSVVALFVKPLFEAMNENSKTVQSGAALCMAKVVECASDPPVLSFQKLCPRI 214

Query: 212 CKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALS 271
           CK L+N +F+AKASLLPVV SLSQVGAIAPQ+LEPLLQ+IHECL +TDWATRKAAAD LS
Sbjct: 215 CKYLNNPHFVAKASLLPVVSSLSQVGAIAPQNLEPLLQTIHECLSNTDWATRKAAADTLS 274

Query: 272 ALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGSDDQKSS 331
           ALAL+SSNLV  GATSTLTVLEA RFDKIKPVRDSM EALQ WKKIAGK D  +DDQK+S
Sbjct: 275 ALALNSSNLVAGGATSTLTVLEASRFDKIKPVRDSMLEALQHWKKIAGKEDGATDDQKTS 334

Query: 332 -----PGGKAPEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLTKGKAGNISEKAVVI 386
                    A    +DL+N                                     AV I
Sbjct: 335 CIDGESSESAGSSEKDLRN-------------------------------------AVGI 357

Query: 387 LKKKAPALSDKELNPEFFQNLS-RGSGDLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKG 445
           LKK+ PALSD++LNPEFFQ L  R S DLPVEVVVPR+CLN+SN+  E ES     ++  
Sbjct: 358 LKKRGPALSDRKLNPEFFQKLEERSSNDLPVEVVVPRQCLNASNTPTEVESVSEKAETGQ 417

Query: 446 RS-------NRMGNSQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRAPDVERELSGNRAG 498
           R+        R  N+++    VS   +H ++D G                +RE S  R G
Sbjct: 418 RTMRKSQIDTRYSNTESQTSGVS-GREHDTVDEGDLN-------------QREQSSYRTG 463

Query: 499 FSKTDSQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRG 558
           F+K     EG F+ NKGNWLAIQRQL+ LERQQAHL NMLQDFMGGSH SMV LENRVRG
Sbjct: 464 FAKNAGPPEG-FMANKGNWLAIQRQLLLLERQQAHLTNMLQDFMGGSHGSMVALENRVRG 522

Query: 559 LERVVEDMARDLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKY----NGRTPFG 614
           LERVVEDMA DLS+S+GRRG  F   F+ S NR+LGKYN F +YS TK      G  PFG
Sbjct: 523 LERVVEDMAHDLSLSAGRRGGAFTARFDESLNRALGKYNSFHDYSSTKLGRGSEGSIPFG 582

Query: 615 ERFAQSDGVAASTRGRGPSWRSDMSDAWDFTAYCASRNGQLGSRRAPGGGPVDSRSPKSE 674
           ERF  SDG ++  RGR P  RSD  DAWDF +Y   + GQ GSRR  GGGP+D+RS K E
Sbjct: 583 ERFVPSDGNSSGVRGRSPPRRSDNPDAWDFHSY--GKYGQSGSRRGIGGGPMDARSSKLE 640

Query: 675 HDNDQVGGRRAWDKGTGPVRLGEGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVAI 734
           ++ DQVG RR W KGTGPVR GEGPSARS+WQASKDEATLEAIRVAG+D+GT+R  RVAI
Sbjct: 641 NEIDQVGTRRGWAKGTGPVRFGEGPSARSIWQASKDEATLEAIRVAGDDNGTARGTRVAI 700

Query: 735 PELTAEAMGDDNVGQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSG 794
           PEL AEA+ DDN  QERDP+WTSWTNAMDA  VGD+D+A++EV+STGDDFLLVKLMDRSG
Sbjct: 701 PELEAEALTDDNNMQERDPVWTSWTNAMDAFSVGDMDSAFSEVLSTGDDFLLVKLMDRSG 760

Query: 795 PVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKEL 854
           PV+DQLSNEVA+E LHA+ QFLLE NL DICLSW+QQL+E+V+ENGP V+ +PME+KKEL
Sbjct: 761 PVIDQLSNEVASEALHAVAQFLLEPNLTDICLSWVQQLLEIVIENGPEVVDLPMEVKKEL 820

Query: 855 LLNLHEASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQFDK 896
           LLNL+E S+++D PEDWEG  P+QLLLQLASAW+I+LQ+ +K
Sbjct: 821 LLNLNEISSSVDLPEDWEGATPEQLLLQLASAWDIDLQELEK 862

Source: Solanum tuberosum subsp. andigenum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567178|ref|NP_194436.2| Microtubule-associated protein TORTIFOLIA1 [Arabidopsis thaliana] gi|83288274|sp|Q9T041.2|MAPT_ARATH RecName: Full=Microtubule-associated protein TORTIFOLIA1; AltName: Full=Microtubule-associated protein SPIRAL2; AltName: Full=Protein CONVOLUTA gi|51870567|emb|CAC80696.2| TORTIFOLIA1 microtubule-associated protein [Arabidopsis thaliana] gi|53791209|dbj|BAD54701.1| microtubule associated protein SPIRAL2 [Arabidopsis thaliana] gi|332659895|gb|AEE85295.1| Microtubule-associated protein TORTIFOLIA1 [Arabidopsis thaliana]

 Score = 1033 bits (2670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/914 (61%), Positives = 669/914 (73%), Gaps = 71/914 (7%)

Query: 3   SQPNKFTKPAKPTSQGQQSSSA--NASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQI 60
           S P      AKPT   + SS A  + S S SL+S  AMVE+KQKILTS+SKLADRDT+QI
Sbjct: 2   STPTTSGSAAKPTRPARSSSLATRSCSNSGSLTSFQAMVELKQKILTSISKLADRDTYQI 61

Query: 61  AIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTK 120
           A+EDLEKTIQ+L+ E+LPM LNCLY+S +DPKPAVKKE + LL+ VC LH + T+ H+TK
Sbjct: 62  AVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVKKECLHLLSYVCSLHCDSTAAHLTK 121

Query: 121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGT-----VVGLFVKPLFEAMM 175
           II+ IVKRLKDSDSG+++ACRD+IG+LS +YL GKEE   T      VGLFVKPLFEAM 
Sbjct: 122 IIAQIVKRLKDSDSGVRDACRDTIGALSGIYLKGKEEGTNTGSASLAVGLFVKPLFEAMG 181

Query: 176 EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ 235
           EQNK VQSGA+MCMA+MVE A+ PPV +FQKLC RICKLLSN +F+AKASLLPVV SLSQ
Sbjct: 182 EQNKVVQSGASMCMARMVESAASPPVTSFQKLCPRICKLLSNSSFLAKASLLPVVSSLSQ 241

Query: 236 VGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEAC 295
           VGAIAPQSLE LL+SIH+CLGSTDW TRKAAA+ L+ALA HSS L+ +   ST+TVLE C
Sbjct: 242 VGAIAPQSLESLLESIHDCLGSTDWVTRKAAAETLTALASHSSGLIKEKTDSTITVLETC 301

Query: 296 RFDKIKPVRDSMNEALQLWKKIAGK-VDVGSDDQKSSPGGK--APEPGEDLKNLNPSDKR 352
           RFDKIKPVR+S+ EALQLWKKI+GK VD  SDD K S   +  + + GE   NL      
Sbjct: 302 RFDKIKPVRESVTEALQLWKKISGKYVDGASDDSKLSASEQLGSEKNGEKRSNL------ 355

Query: 353 AELSAKGPLNGSSPASASLTKGKAGNISEKAVVILKKKAPALSDKELNPEFFQNLSRGSG 412
           A+L  K   +GS+ +  S +KGK G   EKAV +LKKKAP LSDK+ NPEFFQ L R   
Sbjct: 356 ADLMKKEASDGSTLSPDSASKGK-GCFPEKAVGLLKKKAPVLSDKDFNPEFFQRLERRQS 414

Query: 413 DLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRSNRMGNSQTDDFSVSLNNKHRSIDRG 472
              VEVVVPRRC N    N+EEES   DL++ G SNR+ N+Q DD  V          +G
Sbjct: 415 ---VEVVVPRRCKN----NDEEESGLDDLNAMGSSNRLKNTQADDKQV----------KG 457

Query: 473 TAGGNGKDPRMRAPDVE-----RELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLMQL 527
              GNG   R    D       +E  G+ A  S TD+Q+EGSF +N+GNW AIQRQL+QL
Sbjct: 458 RFDGNGSQARTSGDDKAGVVNGKETPGHHAPVSNTDNQSEGSFTSNRGNWSAIQRQLLQL 517

Query: 528 ERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRGSNFAMGFEG 587
           ERQQ +LMNMLQ+F+GGSHDSMVTLE RVRGLER+VEDMARDLSISSGRR +N   GF  
Sbjct: 518 ERQQTNLMNMLQEFIGGSHDSMVTLEGRVRGLERIVEDMARDLSISSGRR-ANLTAGF-- 574

Query: 588 SNNRSLGKYNGFAEYSGTKYNGRTPFGERFAQSDGVAASTRGRGPSWRSDMSDAWDFTAY 647
                 GKYN FA Y   KYNGR P GER +Q+DG       RG  W SDM+D W    +
Sbjct: 575 ------GKYNSFANYPTGKYNGRAP-GERGSQTDGAM-----RGRMWNSDMADDWFIPPH 622

Query: 648 CASRNGQLGSRRAPGGGPVDSRSPKSE-HDNDQVG-GRRAWD-KGTGPVRLGEGPSARSV 704
            ASRNGQ G RR          SP+SE ++N+ +G GRR WD K +G +R GEGPSARSV
Sbjct: 623 AASRNGQAGPRR----------SPRSEQYENEHMGNGRRGWDNKASGTIRFGEGPSARSV 672

Query: 705 WQASKDEATLEAIRVAGEDSGTSRSARVAI-PELTAEAMGDD-NVGQERDPIWTSWTNAM 762
           WQASKDEATLEAIRVAGED    R  RVA+ PE  AEAMGDD N GQERDPIW SW+NAM
Sbjct: 673 WQASKDEATLEAIRVAGEDGAVPRPTRVAVAPE--AEAMGDDDNEGQERDPIWVSWSNAM 730

Query: 763 DAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLF 822
            +++VGD+D AYAEV+  GD  L++KLMD++GP +DQ+SNE+ANE L+ I QFLL+ +L+
Sbjct: 731 HSLRVGDIDAAYAEVLCAGDQHLVIKLMDKTGPSLDQMSNEIANEALNFISQFLLDHSLY 790

Query: 823 DICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLLQ 882
           DICLSW QQL+ELVL++G    G+PMELK E+L NL +A +TMDPPEDWEGPAP+QL++Q
Sbjct: 791 DICLSWSQQLLELVLQDGADTFGVPMELKTEILYNLQDACSTMDPPEDWEGPAPEQLVVQ 850

Query: 883 LASAWEIELQQFDK 896
           LAS WEI+LQQFDK
Sbjct: 851 LASVWEIDLQQFDK 864

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4490702|emb|CAB38836.1| hypothetical protein [Arabidopsis thaliana] gi|7269559|emb|CAB79561.1| hypothetical protein [Arabidopsis thaliana]

 Score = 1016 bits (2628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/877 (62%), Positives = 651/877 (74%), Gaps = 69/877 (7%)

Query: 38  MVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKK 97
           MVE+KQKILTS+SKLADRDT+QIA+EDLEKTIQ+L+ E+LPM LNCLY+S +DPKPAVKK
Sbjct: 1   MVELKQKILTSISKLADRDTYQIAVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVKK 60

Query: 98  ESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEE 157
           E + LL+ VC LH + T+ H+TKII+ IVKRLKDSDSG+++ACRD+IG+LS +YL GKEE
Sbjct: 61  ECLHLLSYVCSLHCDSTAAHLTKIIAQIVKRLKDSDSGVRDACRDTIGALSGIYLKGKEE 120

Query: 158 NNGT-----VVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARIC 212
              T      VGLFVKPLFEAM EQNK VQSGA+MCMA+MVE A+ PPV +FQKLC RIC
Sbjct: 121 GTNTGSASLAVGLFVKPLFEAMGEQNKVVQSGASMCMARMVESAASPPVTSFQKLCPRIC 180

Query: 213 KLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSA 272
           KLLSN +F+AKASLLPVV SLSQVGAIAPQSLE LL+SIH+CLGSTDW TRKAAA+ L+A
Sbjct: 181 KLLSNSSFLAKASLLPVVSSLSQVGAIAPQSLESLLESIHDCLGSTDWVTRKAAAETLTA 240

Query: 273 LALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK-VDVGSDDQKSS 331
           LA HSS L+ +   ST+TVLE CRFDKIKPVR+S+ EALQLWKKI+GK VD  SDD K S
Sbjct: 241 LASHSSGLIKEKTDSTITVLETCRFDKIKPVRESVTEALQLWKKISGKYVDGASDDSKLS 300

Query: 332 PGGK--APEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLTKGKAGNISEKAVVILKK 389
              +  + + GE   NL      A+L  K   +GS+ +  S +KGK G   EKAV +LKK
Sbjct: 301 ASEQLGSEKNGEKRSNL------ADLMKKEASDGSTLSPDSASKGK-GCFPEKAVGLLKK 353

Query: 390 KAPALSDKELNPEFFQNLSRGSGDLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRSNR 449
           KAP LSDK+ NPEFFQ L R      VEVVVPRRC N    N+EEES   DL++ G SNR
Sbjct: 354 KAPVLSDKDFNPEFFQRLERRQS---VEVVVPRRCKN----NDEEESGLDDLNAMGSSNR 406

Query: 450 MGNSQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRAPDVE-----RELSGNRAGFSKTDS 504
           + N+Q DD  V          +G   GNG   R    D       +E  G+ A  S TD+
Sbjct: 407 LKNTQADDKQV----------KGRFDGNGSQARTSGDDKAGVVNGKETPGHHAPVSNTDN 456

Query: 505 QAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVE 564
           Q+EGSF +N+GNW AIQRQL+QLERQQ +LMNMLQ+F+GGSHDSMVTLE RVRGLER+VE
Sbjct: 457 QSEGSFTSNRGNWSAIQRQLLQLERQQTNLMNMLQEFIGGSHDSMVTLEGRVRGLERIVE 516

Query: 565 DMARDLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKYNGRTPFGERFAQSDGVA 624
           DMARDLSISSGRR +N   GF        GKYN FA Y   KYNGR P GER +Q+DG  
Sbjct: 517 DMARDLSISSGRR-ANLTAGF--------GKYNSFANYPTGKYNGRAP-GERGSQTDGAM 566

Query: 625 ASTRGRGPSWRSDMSDAWDFTAYCASRNGQLGSRRAPGGGPVDSRSPKSE-HDNDQVG-G 682
                RG  W SDM+D W    + ASRNGQ G RR          SP+SE ++N+ +G G
Sbjct: 567 -----RGRMWNSDMADDWFIPPHAASRNGQAGPRR----------SPRSEQYENEHMGNG 611

Query: 683 RRAWD-KGTGPVRLGEGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVAI-PELTAE 740
           RR WD K +G +R GEGPSARSVWQASKDEATLEAIRVAGED    R  RVA+ PE  AE
Sbjct: 612 RRGWDNKASGTIRFGEGPSARSVWQASKDEATLEAIRVAGEDGAVPRPTRVAVAPE--AE 669

Query: 741 AMGDD-NVGQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQ 799
           AMGDD N GQERDPIW SW+NAM +++VGD+D AYAEV+  GD  L++KLMD++GP +DQ
Sbjct: 670 AMGDDDNEGQERDPIWVSWSNAMHSLRVGDIDAAYAEVLCAGDQHLVIKLMDKTGPSLDQ 729

Query: 800 LSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLH 859
           +SNE+ANE L+ I QFLL+ +L+DICLSW QQL+ELVL++G    G+PMELK E+L NL 
Sbjct: 730 MSNEIANEALNFISQFLLDHSLYDICLSWSQQLLELVLQDGADTFGVPMELKTEILYNLQ 789

Query: 860 EASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQFDK 896
           +A +TMDPPEDWEGPAP+QL++QLAS WEI+LQQFDK
Sbjct: 790 DACSTMDPPEDWEGPAPEQLVVQLASVWEIDLQQFDK 826

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799280|ref|XP_002867524.1| hypothetical protein ARALYDRAFT_913839 [Arabidopsis lyrata subsp. lyrata] gi|297313360|gb|EFH43783.1| hypothetical protein ARALYDRAFT_913839 [Arabidopsis lyrata subsp. lyrata]

 Score = 1008 bits (2605), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/874 (62%), Positives = 648/874 (74%), Gaps = 61/874 (6%)

Query: 37  AMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVK 96
           AMVE+KQKILTS+SKLADRDT+QIA+EDLEKTIQ+L+ E+LPM LNCLY+S +DPKPAVK
Sbjct: 38  AMVELKQKILTSISKLADRDTYQIAVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVK 97

Query: 97  KESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE 156
           KE + LL+ VC LH + T+ H+TKII+ IVKRLKDSDSG+++ACRD+IG+LS +YL GKE
Sbjct: 98  KECLHLLSCVCSLHCDSTAAHLTKIIAQIVKRLKDSDSGVRDACRDTIGALSGIYLKGKE 157

Query: 157 ENNGT-----VVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARI 211
           E   T      VGLFVKPLFEAM EQNK VQSGAAMCMA+MVE A+ PP+ +FQKLC +I
Sbjct: 158 EGTNTGSASLAVGLFVKPLFEAMGEQNKVVQSGAAMCMARMVESAASPPITSFQKLCPKI 217

Query: 212 CKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALS 271
           CKLLSN +F+AKASLLPVV SLSQVGAIAPQSLE LL+SIH+CLGSTDW TRKAAA+ L+
Sbjct: 218 CKLLSNSSFLAKASLLPVVSSLSQVGAIAPQSLESLLESIHDCLGSTDWVTRKAAAETLT 277

Query: 272 ALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK-VDVGSDDQKS 330
           ALA HSS L+ +   ST+TVLE  RFDKIKPVR+S+ EALQLWKKI+GK VD  +D+ K 
Sbjct: 278 ALASHSSGLIKEKTDSTITVLETWRFDKIKPVRESVTEALQLWKKISGKYVDGATDESKL 337

Query: 331 SPGGKAPEPGEDLKNLNPSDKR---AELSAKGPLNGSSPASASLTKGKAGNISEKAVVIL 387
           S G       E L +   ++KR   A+L      +GS+ +  S  KGK G + EKAV +L
Sbjct: 338 SSG-------EQLGSEKNAEKRSNLADLMKNEASDGSTLSPDSAFKGK-GCLPEKAVGLL 389

Query: 388 KKKAPALSDKELNPEFFQNLSRGSGDLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRS 447
           KKKAP LSDK+ NPEFFQ L R      VEVVVPRRC N    N EEES   DL++ G S
Sbjct: 390 KKKAPVLSDKDFNPEFFQRLERRQS---VEVVVPRRCKN----NYEEESGLDDLNAMGSS 442

Query: 448 NRMGNSQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRAPDVERELSGNRAGFSKTDSQAE 507
           N   N+Q DD  V    K R    G+  G   D +    +  +E  GN A  S TD+Q+E
Sbjct: 443 NHFKNTQADDKQV----KGRFDGNGSQAGTSVDDKAGVVN-GKEAPGNHAPVSNTDNQSE 497

Query: 508 GSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMA 567
           GSF +N+GNW AIQRQL+QLERQQ +LMNMLQ+F+GGSHDSMVTLE RVRGLER+VEDMA
Sbjct: 498 GSFTSNRGNWSAIQRQLLQLERQQTNLMNMLQEFIGGSHDSMVTLEGRVRGLERIVEDMA 557

Query: 568 RDLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKYNGRTPFGERFAQSDGVAAST 627
           RDLSISSGRRG N   GF        GKYN FA Y   KYNGR P G+R +Q DG     
Sbjct: 558 RDLSISSGRRG-NLTAGF--------GKYNSFANYPTGKYNGRAP-GDRGSQPDGAM--- 604

Query: 628 RGRGPSWRSDMSDAWDFTAYCASRNGQLGSRRAPGGGPVDSRSPKSE-HDNDQVG-GRRA 685
             RG  W SDM+D W    + ASRNGQ G RR          SP+SE ++N+ +G GRR 
Sbjct: 605 --RGRMWNSDMADDWFIPPHAASRNGQAGPRR----------SPRSEQYENEHMGNGRRG 652

Query: 686 WD-KGTGPVRLGEGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVAI-PELTAEAMG 743
           WD K +G +R GEGPSARSVWQASKDEATLEAIRVAGED    R  RVA+ PE  AEAMG
Sbjct: 653 WDNKASGTIRFGEGPSARSVWQASKDEATLEAIRVAGEDGAVPRPTRVAVAPE--AEAMG 710

Query: 744 DD-NVGQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSN 802
           DD N GQERDPIW SW+NAM +++VGD+D AYAEV+  GD  L++KLMDR+GP +DQ+SN
Sbjct: 711 DDENEGQERDPIWASWSNAMHSLRVGDIDAAYAEVLCAGDQHLIIKLMDRTGPSLDQMSN 770

Query: 803 EVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEAS 862
           E+ANE L+ I QFLL+ NL+DICLSW QQL+ELVL++G    G+P+ELK E+L NL +A 
Sbjct: 771 EIANEALNFIAQFLLDHNLYDICLSWSQQLLELVLQDGADTFGVPVELKTEILYNLQDAC 830

Query: 863 TTMDPPEDWEGPAPDQLLLQLASAWEIELQQFDK 896
           +TMDPPEDWEGPAP+QL++QLAS WEI+LQQFDK
Sbjct: 831 STMDPPEDWEGPAPEQLVVQLASVWEIDLQQFDK 864

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110736009|dbj|BAE99978.1| hypothetical protein [Arabidopsis thaliana]

 Score =  963 bits (2489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/847 (61%), Positives = 621/847 (73%), Gaps = 69/847 (8%)

Query: 68  TIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVK 127
           TIQ+L+ E+LPM LNCLY+S +DPKPAVKKE + LL+ VC LH + T+ H+TKII+ IVK
Sbjct: 1   TIQSLTPETLPMFLNCLYDSCSDPKPAVKKECLHLLSYVCSLHCDSTAAHLTKIIAQIVK 60

Query: 128 RLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGT-----VVGLFVKPLFEAMMEQNKGVQ 182
           RLKDSDSG+++ACRD+IG+LS +YL GKEE   T      VGLFVKPLFEAM EQNK VQ
Sbjct: 61  RLKDSDSGVRDACRDTIGALSGIYLKGKEEGTNTGSASLAVGLFVKPLFEAMGEQNKVVQ 120

Query: 183 SGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQ 242
           SGA+MCMA+MVE A+ PPV +FQKLC RICKLLSN +F+AKASLLPVV SLSQVGAIAPQ
Sbjct: 121 SGASMCMARMVESAASPPVTSFQKLCPRICKLLSNSSFLAKASLLPVVSSLSQVGAIAPQ 180

Query: 243 SLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKP 302
           SLE LL+SIH+CLGSTDW TRKAAA+ L+ALA HSS L+ +   ST+TVLE CRFDKIKP
Sbjct: 181 SLESLLESIHDCLGSTDWVTRKAAAETLTALASHSSGLIKEKTDSTITVLETCRFDKIKP 240

Query: 303 VRDSMNEALQLWKKIAGK-VDVGSDDQKSSPGGK--APEPGEDLKNLNPSDKRAELSAKG 359
           VR+S+ EALQLWKKI+GK VD  SDD K S   +  + + GE   NL      A+L  K 
Sbjct: 241 VRESVTEALQLWKKISGKYVDGASDDSKLSASEQLGSEKNGEKRSNL------ADLMKKE 294

Query: 360 PLNGSSPASASLTKGKAGNISEKAVVILKKKAPALSDKELNPEFFQNLSRGSGDLPVEVV 419
             +GS+ +  S +KGK G   EKAV +LKKKAP LSDK+ NPEFFQ L R      VEVV
Sbjct: 295 ASDGSTLSPDSASKGK-GCFPEKAVGLLKKKAPVLSDKDFNPEFFQRLERRQS---VEVV 350

Query: 420 VPRRCLNSSNSNNEEESDPSDLDSKGRSNRMGNSQTDDFSVSLNNKHRSIDRGTAGGNGK 479
           VPRRC N    N+EEES   DL++ G SNR+ N+Q DD  V          +G   GNG 
Sbjct: 351 VPRRCKN----NDEEESGLDDLNAMGSSNRLKNTQADDKQV----------KGRFDGNGS 396

Query: 480 DPRMRAPDVE-----RELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLMQLERQQAHL 534
             R    D       +E  G+ A  S TD+Q+EGSF +N+GNW AIQRQL+QLERQQ +L
Sbjct: 397 QARTSGDDKAGVVNGKETPGHHAPVSNTDNQSEGSFTSNRGNWSAIQRQLLQLERQQTNL 456

Query: 535 MNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRGSNFAMGFEGSNNRSLG 594
           MNMLQ+F+GGSHDSMVTLE RVRGLER+VEDMARDLSISSGRR +N   GF        G
Sbjct: 457 MNMLQEFIGGSHDSMVTLEGRVRGLERIVEDMARDLSISSGRR-ANLTAGF--------G 507

Query: 595 KYNGFAEYSGTKYNGRTPFGERFAQSDGVAASTRGRGPSWRSDMSDAWDFTAYCASRNGQ 654
           KYN FA Y   KYNGR P GER +Q+DG       RG  W SDM+D W    + ASRNGQ
Sbjct: 508 KYNSFANYPTGKYNGRAP-GERGSQTDGAM-----RGRMWNSDMADDWFIPPHAASRNGQ 561

Query: 655 LGSRRAPGGGPVDSRSPKSE-HDNDQVG-GRRAWD-KGTGPVRLGEGPSARSVWQASKDE 711
            G RR          SP+SE ++N+ +G GRR WD K +G +R GEGPSARSVWQASKDE
Sbjct: 562 AGPRR----------SPRSEQYENEHMGNGRRGWDNKASGTIRFGEGPSARSVWQASKDE 611

Query: 712 ATLEAIRVAGEDSGTSRSARVAI-PELTAEAMGDD-NVGQERDPIWTSWTNAMDAIQVGD 769
           ATLEAIRVAGED    R  RVA+ PE  AEAMGDD N GQERDPIW SW+NAM +++VGD
Sbjct: 612 ATLEAIRVAGEDGAVPRPTRVAVAPE--AEAMGDDDNEGQERDPIWVSWSNAMHSLRVGD 669

Query: 770 LDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWI 829
           +D AYAEV+  GD  L++KLMD++GP +DQ+SNE+ANE L+ I QFLL+ +L+DICLSW 
Sbjct: 670 IDAAYAEVLCAGDQHLVIKLMDKTGPSLDQMSNEIANEALNFISQFLLDHSLYDICLSWS 729

Query: 830 QQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLLQLASAWEI 889
           QQL+ELVL++G    G+PMELK E+L NL +A +TMDPPEDWEGPAP+QL++QLAS WEI
Sbjct: 730 QQLLELVLQDGADTFGVPMELKTEILYNLQDACSTMDPPEDWEGPAPEQLVVQLASVWEI 789

Query: 890 ELQQFDK 896
           +LQQFDK
Sbjct: 790 DLQQFDK 796

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	896
TAIR|locus:2136467	864	TOR1 "TORTIFOLIA 1" [Arabidops	0.866	0.898	0.480	3.4e-164
TAIR|locus:2036411	821	AT1G50890 "AT1G50890" [Arabido	0.717	0.783	0.417	3.3e-111
TAIR|locus:2060161	820	AT2G07170 [Arabidopsis thalian	0.324	0.354	0.368	1.3e-72
TAIR|locus:2025906	498	AT1G59850 "AT1G59850" [Arabido	0.381	0.686	0.293	2.8e-50
TAIR|locus:2205739	625	AT1G27210 [Arabidopsis thalian	0.320	0.459	0.328	2.8e-47
TAIR|locus:2154144	615	AT5G62580 [Arabidopsis thalian	0.411	0.6	0.271	1.6e-38
TAIR|locus:504956282	560	AT1G54385 [Arabidopsis thalian	0.302	0.483	0.21	2.1e-05

TAIR|locus:2136467 TOR1 "TORTIFOLIA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1598 (567.6 bits), Expect = 3.4e-164, P = 3.4e-164
 Identities = 403/838 (48%), Positives = 504/838 (60%)

Query:    10 KPAKPTXXXXXXXXXXXXXXXXXXXHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTI 69
             KP +P                      AMVE+KQKILTS+SKLADRDT+QIA+EDLEKTI
Sbjct:    12 KPTRPARSSSLATRSCSNSGSLTSFQ-AMVELKQKILTSISKLADRDTYQIAVEDLEKTI 70

Query:    70 QTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRL 129
             Q+L+ E+LPM LNCLY+S +DPKPAVKKE + LL+ VC LH + T+ H+TKII+ IVKRL
Sbjct:    71 QSLTPETLPMFLNCLYDSCSDPKPAVKKECLHLLSYVCSLHCDSTAAHLTKIIAQIVKRL 130

Query:   130 KDSDSGMKEACRDSIGSLSKLYLNGKEE--NNGTV---VGLFVKPLFEAMMEQNKGVQSG 184
             KDSDSG+++ACRD+IG+LS +YL GKEE  N G+    VGLFVKPLFEAM EQNK VQSG
Sbjct:   131 KDSDSGVRDACRDTIGALSGIYLKGKEEGTNTGSASLAVGLFVKPLFEAMGEQNKVVQSG 190

Query:   185 AAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSL 244
             A+MCMA+MVE A+ PPV +FQKLC RICKLLSN +F+AKASLLPVV SLSQVGAIAPQSL
Sbjct:   191 ASMCMARMVESAASPPVTSFQKLCPRICKLLSNSSFLAKASLLPVVSSLSQVGAIAPQSL 250

Query:   245 EPLLQSIHECLGSTDWATRKXXXXXXXXXXXXXXNLVIDGATSTLTVLEACRFDKIKPVR 304
             E LL+SIH+CLGSTDW TRK               L+ +   ST+TVLE CRFDKIKPVR
Sbjct:   251 ESLLESIHDCLGSTDWVTRKAAAETLTALASHSSGLIKEKTDSTITVLETCRFDKIKPVR 310

Query:   305 DSMNEALQLWKKIAGK-VDVGSDDQKSSPGGKAPEPGEDLKNLNPSDKRAELSAKGPLNG 363
             +S+ EALQLWKKI+GK VD  SDD K S    + + G + KN       A+L  K   +G
Sbjct:   311 ESVTEALQLWKKISGKYVDGASDDSKLSA---SEQLGSE-KNGEKRSNLADLMKKEASDG 366

Query:   364 SSPASASLTKGKAGNISEKAVVILKKKAPALSDKELNPEFFQNLSRGSGDLPVEVVVPRR 423
             S+ +  S +KGK G   EKAV +LKKKAP LSDK+ NPEFFQ L R      VEVVVPRR
Sbjct:   367 STLSPDSASKGK-GCFPEKAVGLLKKKAPVLSDKDFNPEFFQRLERRQS---VEVVVPRR 422

Query:   424 CLXXXXXXXXXXXDPSDLDSKGRSNRMGNSQTDDFSVSLNNKHRSIDRGTAGGNGKDPRM 483
             C               DL++ G SNR+ N+Q DD  V    K R    G+      D + 
Sbjct:   423 CKNNDEEESGL----DDLNAMGSSNRLKNTQADDKQV----KGRFDGNGSQARTSGDDKA 474

Query:   484 RAPDVERELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMG 543
                +  +E  G+ A  S TD+Q+EGSF +N+GNW AIQRQL+QLERQQ +LMNMLQ+F+G
Sbjct:   475 GVVN-GKETPGHHAPVSNTDNQSEGSFTSNRGNWSAIQRQLLQLERQQTNLMNMLQEFIG 533

Query:   544 GSHDSMVTLENRVRGLERVVEDMARDLSISSGRRGSNFA-MG-FEGSNNRSLGKYNGFAE 601
             GSHDSMVTLE RVRGLER+VEDMARDLSISSGRR +  A  G +    N   GKYNG A 
Sbjct:   534 GSHDSMVTLEGRVRGLERIVEDMARDLSISSGRRANLTAGFGKYNSFANYPTGKYNGRAP 593

Query:   602 YS-GTKYNGRTPFGERFAQSDGV--------AASTRGRGPSWRSDMSDAWDFTAYCASRN 652
                G++ +G    G R   SD          AAS  G+    RS  S+ ++       R 
Sbjct:   594 GERGSQTDGAMR-G-RMWNSDMADDWFIPPHAASRNGQAGPRRSPRSEQYENEHMGNGRR 651

Query:   653 G----QLGSRRAPGGGPVDSRSP-KSEHDNDQVGGRR-AWDKGT--GPVRLGEGPSARSV 704
             G      G+ R  G GP  +RS  ++  D   +   R A + G    P R+   P A ++
Sbjct:   652 GWDNKASGTIRF-GEGP-SARSVWQASKDEATLEAIRVAGEDGAVPRPTRVAVAPEAEAM 709

Query:   705 WQASKDEATLEAIRVAGEDSGTSRSARVA-IPELTAEAM--GD--------DNVGQERDP 753
                  +    + I V+   S    S RV  I    AE +  GD        D  G   D 
Sbjct:   710 GDDDNEGQERDPIWVSW--SNAMHSLRVGDIDAAYAEVLCAGDQHLVIKLMDKTGPSLDQ 767

Query:   754 IWTSWTN-AMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLH 810
             +     N A++ I    LD +  ++  +    LL +L+ + G     +  E+  E+L+
Sbjct:   768 MSNEIANEALNFISQFLLDHSLYDICLSWSQQLL-ELVLQDGADTFGVPMELKTEILY 824

GO:0009507 "chloroplast" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0010031 "circumnutation" evidence=IMP

GO:0008017 "microtubule binding" evidence=IDA

GO:0010005 "cortical microtubule, transverse to long axis" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

TAIR|locus:2036411 AT1G50890 "AT1G50890" [Arabidopsis thaliana (taxid:3702)]

 Score = 1098 (391.6 bits), Expect = 3.3e-111, P = 3.3e-111
 Identities = 289/692 (41%), Positives = 395/692 (57%)

Query:    35 HLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTL--SQESLPMLLNCLYESSNDPK 92
             H AMVE+KQ+ILTSLS+L DRDT+QIA++DLEK + ++  S E LP+LL+CL++SS+D K
Sbjct:    31 HSAMVELKQRILTSLSRLGDRDTYQIAVDDLEKIVVSVPDSPEILPVLLHCLFDSSSDLK 90

Query:    93 PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYL 152
               VK+ES+RLL+ +C  +++L+ + + KIISHIVKRLKD+D+G+++ACRD+IGSLS  +L
Sbjct:    91 APVKRESIRLLSFLCLSYTDLSFSQLAKIISHIVKRLKDADNGVRDACRDAIGSLSAQFL 150

Query:   153 NGKEENNG-----TVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKL 207
               KE  NG     ++VGLF KPLFEAM EQNK +QSGAA+CM KM++ A++PPV AFQKL
Sbjct:   151 KEKEVENGNYVGSSLVGLFAKPLFEAMAEQNKSLQSGAAICMGKMIDSATEPPVAAFQKL 210

Query:   208 CARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKXXX 267
             C RI KLL++ N++ KASLLPVVGSLSQVGAIAPQSLE LL SIHECLG T+W TRK   
Sbjct:   211 CPRISKLLNSPNYITKASLLPVVGSLSQVGAIAPQSLESLLHSIHECLGCTNWVTRKAAA 270

Query:   268 XXXXXXXXXXXNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGS-D 326
                        +LV D   STLT LEACRFDKIKPVR+S++EAL +WK IAGK + G+ D
Sbjct:   271 DVLISLAVHSSSLVADKTDSTLTALEACRFDKIKPVRESLSEALNVWKNIAGKGESGTMD 330

Query:   327 DQK--SSPGGKAPEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLTKGKAGNISEKAV 384
             DQK  SS        GE     + S + A L  +G  +G S +S S++K         AV
Sbjct:   331 DQKDVSSEQCILERNGE---TDSVSCEEAGLVMQGSCDGLSSSSDSISK---------AV 378

Query:   385 VILKKKAPALSDKELNPEFFQNLS-RGSGDLPVEVVVPRRCLXXXXXXXXXXXDPSDLDS 443
             +IL+KKAP L+ K+LNPEFFQ L  RGSGD+PVEV++P R             D +    
Sbjct:   379 LILRKKAPRLTGKDLNPEFFQKLEKRGSGDMPVEVILPSRQKNSSNSNTEDESDANTSVL 438

Query:   444 KGRSNRMGNSQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRAPDVE-RELSGNRAGFSKT 502
             + RSN  G  +T      ++ K R      A     D RM   +   R   G+     + 
Sbjct:   439 RSRSN--GLCRT----AGVHTKQRHFG-DFAREKWVDERMNGGESRLRAFDGDHTEVIQA 491

Query:   503 D-SQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLER 561
             D S+  G++   +   L ++RQ   +       M    D M    + +  LE  V  + R
Sbjct:   492 DTSENRGNWPPLQRQLLHLERQQTHIMNMLQDFMGGSHDGMISLENRVRGLERIVEEMSR 551

Query:   562 V--VEDMARDLSISSGRRGSNFAMGFEGSNN--RSLGKYNGFAEYSGTKYNGRTPFGERF 617
                ++  AR  + +S R   +   G++  N    S        +  GT  + ++    R 
Sbjct:   552 EMSIQSGARGKATASWRSDVD---GWDSPNYGPSSRNTQTSTRKIRGTGPSEQSGNSRRA 608

Query:   618 AQSDGVAASTRGRGPSWRSDMSDAWDFTAYCASR-NGQ-LGSRRAPGGGPVDSRSPKSEH 675
                  VA    G GPS RS    + D     A R  G+  G+ R       ++ +   E 
Sbjct:   609 WDKSSVAIRL-GEGPSARSVWQASKDEATLEAIRVAGEDCGTSRNRRVSIPEAEAMMDE- 666

Query:   676 DNDQVGGRRA------WDKGTGPVRLGEGPSA 701
             D+D  GG++       W      +R+G+  SA
Sbjct:   667 DDDNRGGQQGDPIWTCWSNSVHALRVGDTDSA 698

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2060161 AT2G07170 [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.3e-72, Sum P(4) = 1.3e-72
 Identities = 108/293 (36%), Positives = 180/293 (61%)

Query:    40 EMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKES 99
             E+K+K++ +L+KLADRDT+Q  +++LEKT++ L+ + +   L+C+ ++ ++ K AV+KE 
Sbjct:    26 ELKKKVVIALNKLADRDTYQRGVDELEKTVEHLAPDKVSCFLSCILDTDSEQKSAVRKEC 85

Query:   100 VRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENN 159
             +RL+  +   H  L   ++ K++S IVKRLKD DS +++AC +++G L+      +++N 
Sbjct:    86 IRLMGTLARFHEGLVGPYLGKMVSSIVKRLKDPDSVVRDACIETMGVLASKMSCYEDQNF 145

Query:   160 GTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQN 219
             G  V L VKPLFEA+ +QNK VQSGAA+C+A++++ + + PV   Q++  R  KLL+N +
Sbjct:   146 GVFVSL-VKPLFEAIGDQNKYVQSGAALCLARVIDSSPEAPVAIIQRMLMRTVKLLNNSH 204

Query:   220 FMAKASLLPVVGSLSQVGAIAPQS-LEPLLQSIHECLGSTDWATRKXXXXXXXXXXXXXX 278
             F+AK +++ +  S+   G    +S L   + S  + L + DW TRK              
Sbjct:   205 FIAKPAVIELNRSIILAGGATSKSVLSSAMSSFQDALKNKDWTTRKAASVALMEIAATGE 264

Query:   279 NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGSDDQKSS 331
               +     S +  LE+CRFDK+KPVRDS+  AL+ WK + G       + +SS
Sbjct:   265 KFLGPLKASCICSLESCRFDKVKPVRDSVILALKYWKGVPGSDSPEPSETESS 317

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0000910 "cytokinesis" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007017 "microtubule-based process" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

TAIR|locus:2025906 AT1G59850 "AT1G59850" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.8e-50, Sum P(2) = 2.8e-50
 Identities = 107/364 (29%), Positives = 182/364 (50%)

Query:    36 LAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAV 95
             + + ++KQ+++  L++L+DRDT  +A  +L+     LS E+  + +NCL  + +  K  V
Sbjct:    17 MTVTDLKQRVIACLNRLSDRDTLALAAAELDSIALNLSPETFSLFINCLQSTDSSAKSPV 76

Query:    96 KKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK 155
             +K  V LL+++   H +  + H++K++S +++RL+D DS ++ AC   + +   +  N  
Sbjct:    77 RKHCVSLLSVLSRSHGDSLAPHLSKMVSTVLRRLRDPDSSVRAAC---VAASVDMTTN-- 131

Query:   156 EENNGTVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKL 214
                 G    +   P+ E ++   +   Q  AAMC+A  V+ A +P V   QK   +I KL
Sbjct:   132 --ITGQPFSILFGPMIETVIHDCDPNAQISAAMCLAAAVDAADEPDVEQLQKALPKIGKL 189

Query:   215 LSNQNFMAKASLLPVVGSLSQVGAIAPQSLEP-----LLQSIHECLGSTDWATRKXXXXX 269
             L ++ F AKA LL  +G++  +GA+  ++ E      LL ++ E L S DW  RK     
Sbjct:   190 LKSEGFKAKAELLGAIGTV--IGAVGGRNSEKAVLDWLLPNVSEFLSSDDWRARKAAAEA 247

Query:   270 XXXXXXXXXNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAG---KVDVGSD 326
                       L      + L +LE+ RFDK+K VR++MN  L LWK++ G   +V   S 
Sbjct:   248 MARVAMVEEELAPLYKKTCLGILESRRFDKVKLVRETMNRTLGLWKQLEGDSTEVSESSS 307

Query:   327 DQKSSPGGKAPEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLTKGKAGNISEKAVVI 386
               KS+  G +   G+    L   D+        PL+  S     L +G      E+  V+
Sbjct:   308 SSKSASSGLSATSGKRSNTLKGKDRNLNT----PLSSKSNDVEPLDRGDTPKDVEQEAVV 363

Query:   387 LKKK 390
              K+K
Sbjct:   364 SKEK 367

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2205739 AT1G27210 [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 2.8e-47, Sum P(2) = 2.8e-47
 Identities = 100/304 (32%), Positives = 167/304 (54%)

Query:    40 EMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKES 99
             ++KQ+++  L+KLADRDT  +A  +L+   + L+ +S    LNC++ + +  K  V+K+ 
Sbjct:    34 DLKQRVIACLNKLADRDTLALASAELDSIARNLTHDSFSPFLNCIHNTDSSVKSPVRKQC 93

Query:   100 VRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENN 159
             V LL+++   H +  + H+ K++S +++RL+D DS ++ AC  +   +S    +   +  
Sbjct:    94 VALLSVLSRYHGDSLTPHLAKMVSTVIRRLRDPDSSVRSACAVATADMSA---HVTRQPF 150

Query:   160 GTVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ 218
              +V     KPL E ++++ +  +Q GAA+C+A  V+ A+DP     +K   +I KLL + 
Sbjct:   151 ASVA----KPLIETLIQEGDSNLQIGAALCLAASVDAATDPESEQLRKSLPKIGKLLKSD 206

Query:   219 NFMAKASLLPVVGSLSQVGAIAPQS-LEPLLQSIHECLGSTDWATRKXXXXXXXXXXXXX 277
              F AKA+LL  VGS+   G    +  L+ L+  + E L S DWA RK             
Sbjct:   207 GFKAKAALLSAVGSIITAGGAGTKPVLDWLVPVLIEFLSSEDWAARKSAAEALGKVATAE 266

Query:   278 XNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGSDDQKS-SPGGKA 336
              +L      +  T LE+ RFDK+K VR++MN AL LWK      +V +DD+ S SP   +
Sbjct:   267 -DLASQYKKTCTTALESRRFDKVKSVRETMNRALNLWK------EVSTDDEASLSPSRSS 319

Query:   337 PEPG 340
              + G
Sbjct:   320 TDDG 323

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2154144 AT5G62580 [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
 Identities = 109/401 (27%), Positives = 184/401 (45%)

Query:    36 LAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES----LPMLLNCLYESSNDP 91
             +A    KQ +   L+KL DRDT  +A  +L+   + +   S    L   ++ +       
Sbjct:     1 MATKNSKQNMSVLLTKLGDRDTFTMAARELDLMARQIDPSSSSGNLQSFISVILSVDTGD 60

Query:    92 KPAVKKESVRLLALVC-ELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKL 150
             KPAV+K  + LLA++   L     S  ++KI++ I +RL+D DS ++  C  ++ ++S  
Sbjct:    61 KPAVRKHCIHLLAVLSVSLPLNSLSPFLSKILTRITRRLRDPDSSIRSTCVAAVSAISS- 119

Query:   151 YLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDP-PVVAFQKLC 208
                            F+KPL + +  EQ    Q GAA+C+A  ++ ASDP PV   Q L 
Sbjct:   120 -----RTTKPPFYSAFMKPLADTLFTEQEVNAQIGAALCLAAAIDSASDPDPVRLGQTLL 174

Query:   209 ARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPL-LQSIHECL----GSTDWATR 263
              R+ KL+    F AK++ + V+GS+   G ++  S+    L+ + +CL     S DWA R
Sbjct:   175 PRLEKLVKCNAFKAKSAGVVVIGSVIGAGGLSGTSVSSGGLKGLVDCLLSFLVSEDWAAR 234

Query:   264 KXXXXXXXXXXXXXXNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDV 323
             K              N + +     L + E+ ++DK+K VR+ MN+ ++ WK++    D+
Sbjct:   235 KAAAEALGRLATMERNELGEFKAKCLKIFESRKYDKVKAVREVMNQMMEAWKQVP---DL 291

Query:   324 GSDDQKSSPGGKAPEPGEDLKNLNPSDKRA-ELSAKGP---LNGSSPASASLTKGKAGNI 379
                ++ S P   A   G+      PS  R     AK     +N S+P  +SL        
Sbjct:   292 S--EEVSPPRSNASSKGDASDGRYPSGSRVGSTPAKSRTHLVNRSTPPGSSLATTARKQA 349

Query:   380 SEKAVVILKKKAPALSDKELNPEFFQNLS--RGSGDLPVEV 418
             + K++    +K  +L+     P   + L    G   +P  V
Sbjct:   350 NRKSI---DQKKTSLTASLTKPNVRRRLEWKAGGASIPTGV 387

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504956282 AT1G54385 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 63/300 (21%), Positives = 140/300 (46%)

Query:    41 MKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESV 100
             ++Q+ L +L K  D ++ + A++ L+  ++ L  +++P  L  ++E+  +      + ++
Sbjct:     9 LRQE-LANLDK--DTESRKSAMKALKSYVKDLDSKAIPGFLAQVFETK-ETNSLSGEYTI 64

Query:   101 RLLALVCELHSELTSTHVTKIISHIVKRLKDSDSG--MKEACRDSIGSLSKLYLNGK--E 156
              L  ++  +H       +  I+S IVK L  S     +++AC   I ++++  ++    E
Sbjct:    65 SLYEILARVHGPNIVPQIDTIMSTIVKTLASSAGSFPLQQACSKVIPAIARYGIDPTTTE 124

Query:   157 ENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICK--- 213
             +    ++    KPL ++++   + + SGAA+C+  +V+  SD    A  ++  R+C+   
Sbjct:   125 DKKRVIIHSLCKPLTDSLLASQESLTSGAALCLKALVD--SDNWRFASDEMVNRVCQNVV 182

Query:   214 --LLSNQNFMAKASL-LPVVGSLSQVGAIAPQSLEPLLQSIHECL-----GSTDWATRKX 265
               L SN N   +  L + +V SL++   +  ++   LL  IH  L     G ++  ++K 
Sbjct:   183 VALDSNSN---QTHLQMGLVMSLAKHNPLIVEAYARLL--IHTGLRILGFGVSEGNSQKR 237

Query:   266 XXXXXXXXXXXXX---NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVD 322
                               +       +  +E C+ D++  VR +  EA+   K+IA +++
Sbjct:   238 LSAVQMLNFLMKCLDPRSIYSEVELIIKEMERCQSDQMAYVRGAAYEAMMTSKRIAAELE 297


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.130   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      896       842   0.00081  122 3  11 23  0.46    34
                                                     37  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  627 (67 KB)
  Total size of DFA:  412 KB (2198 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  79.93u 0.14s 80.07t   Elapsed:  00:00:03
  Total cpu time:  79.93u 0.14s 80.07t   Elapsed:  00:00:03
  Start:  Mon May 20 17:56:00 2013   End:  Mon May 20 17:56:03 2013

GO:0000245 "spliceosomal complex assembly" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9T041	MAPT_ARATH	No assigned EC number	0.6137	0.9408	0.9756	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027360001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (846 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	896
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.97
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.96
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.93
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.51
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.51
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.46
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.45
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.24
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.17
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.12
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.12
PRK09687	280	putative lyase; Provisional	99.1
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.06
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.94
PRK09687	280	putative lyase; Provisional	98.93
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.88
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.81
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.81
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.77
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	98.77
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.69
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.68
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.63
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.61
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.6
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.6
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	98.57
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.52
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	98.51
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.48
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.47
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.44
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.43
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	98.43
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.42
PTZ00429	746	beta-adaptin; Provisional	98.4
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	98.39
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	98.39
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.3
KOG2032	533	consensus Uncharacterized conserved protein [Funct	98.29
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.29
PTZ00429	746	beta-adaptin; Provisional	98.2
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.15
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.12
KOG2956	516	consensus CLIP-associating protein [General functi	98.09
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	98.05
PF05004	309	IFRD: Interferon-related developmental regulator (	98.04
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	97.99
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.93
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	97.92
KOG2933	334	consensus Uncharacterized conserved protein [Funct	97.88
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.84
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.83
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.8
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.79
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.77
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	97.77
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.76
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.64
KOG2956	516	consensus CLIP-associating protein [General functi	97.61
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.61
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	97.6
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.53
TIGR02270	410	conserved hypothetical protein. Members are found	97.5
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	97.48
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.47
TIGR02270	410	conserved hypothetical protein. Members are found	97.46
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.41
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.39
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.38
PF05004	309	IFRD: Interferon-related developmental regulator (	97.36
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.35
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.35
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	97.33
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	97.26
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	97.25
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	97.22
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.18
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.18
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	97.09
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.0
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	97.0
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.96
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	96.94
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.93
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	96.92
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.91
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.87
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.85
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	96.8
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.79
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	96.69
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.65
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	96.62
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	96.6
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.48
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	96.43
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.39
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.35
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.33
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.28
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	96.26
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	96.26
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.18
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	96.07
KOG0567	289	consensus HEAT repeat-containing protein [General	96.02
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	95.95
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.94
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	95.89
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	95.87
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	95.86
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	95.74
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	95.67
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	95.65
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	95.64
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	95.6
KOG2025	892	consensus Chromosome condensation complex Condensi	95.6
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	95.57
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	95.56
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	95.54
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	95.52
KOG2032	533	consensus Uncharacterized conserved protein [Funct	95.48
KOG2025	892	consensus Chromosome condensation complex Condensi	95.47
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	95.41
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	95.39
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	95.34
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	95.31
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	95.3
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	95.26
KOG2137	700	consensus Protein kinase [Signal transduction mech	95.17
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	95.1
KOG2549	576	consensus Transcription initiation factor TFIID, s	95.03
KOG2259	823	consensus Uncharacterized conserved protein [Funct	95.02
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	94.99
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	94.89
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	94.81
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	94.73
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	94.69
KOG4413	524	consensus 26S proteasome regulatory complex, subun	94.68
PF05536	543	Neurochondrin: Neurochondrin	94.61
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	94.61
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	94.6
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	94.57
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	94.54
PF10350	255	DUF2428: Putative death-receptor fusion protein (D	94.51
KOG2933	334	consensus Uncharacterized conserved protein [Funct	94.48
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	94.45
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	94.19
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	94.18
KOG2149	393	consensus Uncharacterized conserved protein [Funct	94.1
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	94.04
KOG2081	559	consensus Nuclear transport regulator [Intracellul	94.02
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	93.92
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	93.91
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	93.87
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	93.72
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	93.58
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	93.55
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	93.48
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	93.38
KOG2137	700	consensus Protein kinase [Signal transduction mech	93.22
KOG2842	427	consensus Interferon-related protein PC4 like [Cyt	93.11
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	93.03
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	92.98
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	92.97
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	92.88
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	92.83
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	92.75
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	92.69
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	92.66
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	92.63
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	92.42
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	92.32
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	92.3
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	92.28
KOG1243	690	consensus Protein kinase [General function predict	92.26
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	92.26
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	92.18
KOG2062	929	consensus 26S proteasome regulatory complex, subun	92.17
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	92.14
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	92.13
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	91.51
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	91.36
PF05804	708	KAP: Kinesin-associated protein (KAP)	91.23
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	91.17
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	91.05
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	90.7
KOG1837	1621	consensus Uncharacterized conserved protein [Funct	90.67
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	90.61
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	90.56
KOG0413	1529	consensus Uncharacterized conserved protein relate	90.43
KOG1243	690	consensus Protein kinase [General function predict	90.37
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	90.31
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	90.2
COG5656	970	SXM1 Importin, protein involved in nuclear import	90.15
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	89.83
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	89.62
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	89.6
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	89.54
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	89.42
PF05804	708	KAP: Kinesin-associated protein (KAP)	89.29
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	88.83
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	88.64
KOG2549	576	consensus Transcription initiation factor TFIID, s	88.62
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	88.61
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	88.6
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	88.42
KOG4413	524	consensus 26S proteasome regulatory complex, subun	88.14
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	88.02
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	87.93
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	87.88
KOG2062	929	consensus 26S proteasome regulatory complex, subun	87.84
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	87.78
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	87.4
KOG0414	1251	consensus Chromosome condensation complex Condensi	86.85
COG5116	926	RPN2 26S proteasome regulatory complex component [	86.43
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	86.3
COG5116	926	RPN2 26S proteasome regulatory complex component [	86.17
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	85.8
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	85.36
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	85.28
PF11919	90	DUF3437: Domain of unknown function (DUF3437); Int	85.26
KOG0567	289	consensus HEAT repeat-containing protein [General	85.07
KOG1048	717	consensus Neural adherens junction protein Plakoph	84.93
KOG1293	678	consensus Proteins containing armadillo/beta-caten	84.76
KOG1293	678	consensus Proteins containing armadillo/beta-caten	84.74
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	84.57
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	84.57
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	84.31
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	83.05
KOG4524	1014	consensus Uncharacterized conserved protein [Funct	82.95
PF05327	563	RRN3: RNA polymerase I specific transcription init	82.63
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	82.08
KOG0413	1529	consensus Uncharacterized conserved protein relate	81.86
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	80.81
KOG3961	262	consensus Uncharacterized conserved protein [Funct	80.63
PF04510	174	DUF577: Family of unknown function (DUF577); Inter	80.47
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	80.43
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	80.42

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3e-30  Score=293.25  Aligned_cols=256  Identities=20%  Similarity=0.243  Sum_probs=229.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHH
Q 002658           57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM  136 (896)
Q Consensus        57 T~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~V  136 (896)
                      .|+|.++.||.+++-++.+.++.+|+.|.+.+.++.|.+|++++++||++||||.+++.||||.++|+++..|.|..+.|
T Consensus       371 LRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplV  450 (885)
T KOG2023|consen  371 LRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLV  450 (885)
T ss_pred             HhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccce
Confidence            79999999999999998888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhc
Q 002658          137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS  216 (896)
Q Consensus       137 R~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLk  216 (896)
                      |.++|||+++++.|++...   ..+++..+|.+|+..+.+.||.||+|||+|+|.+.|.+.+...|||.+++..|.+.++
T Consensus       451 RsITCWTLsRys~wv~~~~---~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~  527 (885)
T KOG2023|consen  451 RSITCWTLSRYSKWVVQDS---RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFG  527 (885)
T ss_pred             eeeeeeeHhhhhhhHhcCC---hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            9999999999999997643   3467777888888888999999999999999999999999889999999999999998


Q ss_pred             CCchhhHH--HHHHHHHHHH-hcc-ccC-cccHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHHHHhcchHHHhh----
Q 002658          217 NQNFMAKA--SLLPVVGSLS-QVG-AIA-PQSLEPLLQSIHEC---LGSTDWATRKAAADALSALALHSSNLVIDG----  284 (896)
Q Consensus       217 s~s~kaK~--alL~aIgSLA-~vg-a~~-~pyle~lLp~L~e~---LsddDW~lRKaA~EaLgsLA~avGe~L~Py----  284 (896)
                        .||.|+  .+|+|||++| .+| +.. +.|++.+||+|.+.   |+|+|..+ ..-+|||++||.++|+.|.||    
T Consensus       528 --kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~V  604 (885)
T KOG2023|consen  528 --KYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPV  604 (885)
T ss_pred             --HHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHH
Confidence              899888  7999999999 478 443 88999999999984   78877554 566999999999999999999    


Q ss_pred             HHHHHHHHHhhhc-------C--CChhhHHHHHHHHHHHHHhc
Q 002658          285 ATSTLTVLEACRF-------D--KIKPVRDSMNEALQLWKKIA  318 (896)
Q Consensus       285 ~~~~I~~LE~~Rf-------D--KvKpVRDaA~eALe~WK~la  318 (896)
                      ..+|+.+++.|.+       |  -+-|.||+++.+|++..+++
T Consensus       605 y~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLa  647 (885)
T KOG2023|consen  605 YQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLA  647 (885)
T ss_pred             HHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHH
Confidence            4677888775432       1  22568899999999999988

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.1e-27  Score=286.47  Aligned_cols=258  Identities=17%  Similarity=0.207  Sum_probs=227.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChH
Q 002658           57 THQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSG  135 (896)
Q Consensus        57 T~k~Aa~eLD~La~~L~pd~-Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~  135 (896)
                      +...|.+.||.++.+|+++. +|+++.++...+++++|..|++++++|++++|||++.+.++|++|+++|+..|+||+|.
T Consensus       325 ~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dphpr  404 (1075)
T KOG2171|consen  325 PYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPR  404 (1075)
T ss_pred             cHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence            88999999999999999887 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCchhHhhhHHH-HHHHH-hcCCHhHHHHHHHHHHHHHHhc-CCCCchhHHHHHH-HH
Q 002658          136 MKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKP-LFEAM-MEQNKGVQSGAAMCMAKMVECA-SDPPVVAFQKLCA-RI  211 (896)
Q Consensus       136 VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~p-L~eaL-~Eqnk~VQ~gAasALAkIIE~a-~d~~~~yL~~LlP-RL  211 (896)
                      ||.|||++||+++..+ .+.   ...++.+.++| |+..| ..++++||..||.||-.+.|.+ ++.+.+||+.||. +|
T Consensus       405 Vr~AA~naigQ~stdl-~p~---iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l  480 (1075)
T KOG2171|consen  405 VRYAALNAIGQMSTDL-QPE---IQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKL  480 (1075)
T ss_pred             HHHHHHHHHHhhhhhh-cHH---HHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999 332   23556666664 45555 3569999999999999999886 5677799999999 55


Q ss_pred             HHHhcCCchhhHHHHHHHHHHHHhc-cccCcccHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHHHHhcc-hHHHhhH
Q 002658          212 CKLLSNQNFMAKASLLPVVGSLSQV-GAIAPQSLEPLLQSIHECLGS----TDWATRKAAADALSALALHSS-NLVIDGA  285 (896)
Q Consensus       212 ~kLLks~s~kaK~alL~aIgSLA~v-ga~~~pyle~lLp~L~e~Lsd----dDW~lRKaA~EaLgsLA~avG-e~L~Py~  285 (896)
                      ..++.+.+..+|..++.+|+++|.+ +..|.||++.+||.|..+|..    +...+|..++||++.|+.++| +.|.|+.
T Consensus       481 ~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a  560 (1075)
T KOG2171|consen  481 LLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA  560 (1075)
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH
Confidence            5555667888999999999999864 478999999999999999876    347799999999999999999 9999999


Q ss_pred             HHHHHHHHhh---hcCCChhhHHHHHHHHHHHHHhccCC
Q 002658          286 TSTLTVLEAC---RFDKIKPVRDSMNEALQLWKKIAGKV  321 (896)
Q Consensus       286 ~~~I~~LE~~---RfDKvKpVRDaA~eALe~WK~la~~~  321 (896)
                      ..+|+.+...   -.|.+.|.|+.   .+.+|..++..+
T Consensus       561 ~eliqll~~~~~~~~~~dd~~~sy---~~~~warmc~il  596 (1075)
T KOG2171|consen  561 EELIQLLLELQGSDQDDDDPLRSY---MIAFWARMCRIL  596 (1075)
T ss_pred             HHHHHHHHhhcccchhhccccHHH---HHHHHHHHHHHh
Confidence            9999988655   56677889988   789999999887

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.7e-25  Score=254.80  Aligned_cols=265  Identities=13%  Similarity=0.088  Sum_probs=239.8

Q ss_pred             HHHHHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccc-hhh
Q 002658           41 MKQKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT-STH  117 (896)
Q Consensus        41 Lk~rll~~L~KL--sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I-~P~  117 (896)
                      --+++.+.|...  .|++|++.+...|+++-.  -| +|++||-||+....+.+-..|..|+++|++.+++|...+ .+.
T Consensus        11 ~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~--~p-dfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~   87 (885)
T KOG2023|consen   11 GLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL--FP-DFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEV   87 (885)
T ss_pred             HHHHHHHHHHhccCCChHHHHHHHHHHHHHhc--cc-chhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHH
Confidence            346777888666  699999999999998887  34 699999999988888889999999999999999999775 567


Q ss_pred             HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC
Q 002658          118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS  197 (896)
Q Consensus       118 LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~  197 (896)
                      +.+|.+.++++|.|+++.||.+..-.|+.|+...   +    -..|+++|+.|.+.|..++-+.|+||+.||.|+||+..
T Consensus        88 ~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~---~----~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa  160 (885)
T KOG2023|consen   88 LDYIKSECLHGLGDASPLIRATVGIVITTIASTG---G----LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSA  160 (885)
T ss_pred             HHHHHHHHHhhccCchHHHHhhhhheeeeeeccc---c----cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhH
Confidence            8999999999999999999999999888888766   2    25699999999999999999999999999999999862


Q ss_pred             C-----CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002658          198 D-----PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALS  271 (896)
Q Consensus       198 d-----~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLg  271 (896)
                      +     .....|+.|+|||+.+++|++.++|..++.||+.++-.. +.+..+++.++..|+....|++..+||.+|.+|+
T Consensus       161 ~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv  240 (885)
T KOG2023|consen  161 QFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALV  240 (885)
T ss_pred             HHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence            2     223568999999999999999999999999999997655 6778899999999999999999999999999999


Q ss_pred             HHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658          272 ALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA  318 (896)
Q Consensus       272 sLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la  318 (896)
                      .+....++++.||+..+|+||....+|.++   ++|+||||||..++
T Consensus       241 ~Llevr~dkl~phl~~IveyML~~tqd~dE---~VALEACEFwla~a  284 (885)
T KOG2023|consen  241 FLLEVRPDKLVPHLDNIVEYMLQRTQDVDE---NVALEACEFWLALA  284 (885)
T ss_pred             HHHHhcHHhcccchHHHHHHHHHHccCcch---hHHHHHHHHHHHHh
Confidence            999999999999999999999999999999   89999999999999

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.51  E-value=5.7e-13  Score=154.56  Aligned_cols=214  Identities=17%  Similarity=0.217  Sum_probs=177.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCC---------HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 002658           57 THQIAIEDLEKTIQTLSQES---------LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVK  127 (896)
Q Consensus        57 T~k~Aa~eLD~La~~L~pd~---------Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~Ilr  127 (896)
                      -+++.++..++++..|+..+         +..+|.++++...+     -...+..||+++...+..+.||||.|+++|++
T Consensus       732 yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~-----d~vml~gfg~V~~~lg~r~kpylpqi~stiL~  806 (1172)
T KOG0213|consen  732 YRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTE-----DSVMLLGFGTVVNALGGRVKPYLPQICSTILW  806 (1172)
T ss_pred             HHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccc-----hhhhhhhHHHHHHHHhhccccchHHHHHHHHH
Confidence            67899999999999886322         45556666554432     13677889999999999999999999999999


Q ss_pred             hhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC-CCCchhHHH
Q 002658          128 RLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS-DPPVVAFQK  206 (896)
Q Consensus       128 rLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~-d~~~~yL~~  206 (896)
                      +|+.+.+.||+.+++.+++|+..+..++.   ++.+..+=-.|+|.|++..+.|-.....||.+|+...+ ....+-+..
T Consensus       807 rLnnksa~vRqqaadlis~la~Vlktc~e---e~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~d  883 (1172)
T KOG0213|consen  807 RLNNKSAKVRQQAADLISSLAKVLKTCGE---EKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKD  883 (1172)
T ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHhccH---HHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhh
Confidence            99999999999999999999999955532   24566666789999999999999988888888887653 233456888


Q ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHH--HHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002658          207 LCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQ--SIHECLGSTDWATRKAAADALSALALHSS  278 (896)
Q Consensus       207 LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp--~L~e~LsddDW~lRKaA~EaLgsLA~avG  278 (896)
                      |+|+|.++|+|.|-|+.+.+++++|.|+.-|..+.+.-+|.--  -|++.|......+|++|.++||.||.++|
T Consensus       884 llPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIG  957 (1172)
T KOG0213|consen  884 LLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIG  957 (1172)
T ss_pred             hcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcC
Confidence            9999999999999999999999999999877555555555443  37788999999999999999999999999

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=7.5e-13  Score=152.87  Aligned_cols=299  Identities=15%  Similarity=0.138  Sum_probs=231.5

Q ss_pred             CccccCCCCCCCCCcchhhhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC--HHHHHHHHhhhcCCCCh
Q 002658           16 SQGQQSSSANASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES--LPMLLNCLYESSNDPKP   93 (896)
Q Consensus        16 ~~~~~~~~~~~~~~~~~s~~~~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~--Lp~fLs~L~es~ss~k~   93 (896)
                      ++.-|.++++|.++.+..........-.+++.-+-...+-..++-|.-++-.+...+.-..  =..||.-|.....+.++
T Consensus       109 s~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~  188 (569)
T KOG1242|consen  109 SKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKS  188 (569)
T ss_pred             cHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccch
Confidence            3445688889998777665544433333333322224444455556666666666543222  23567888888878787


Q ss_pred             hhHHH-HHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHH
Q 002658           94 AVKKE-SVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFE  172 (896)
Q Consensus        94 ~vRKe-AIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~e  172 (896)
                      ..|++ +..++..++...+....||+..++|.|+..+.|....||+|+.+++-++...+...       -+..++++++.
T Consensus       189 ~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~-------aVK~llpsll~  261 (569)
T KOG1242|consen  189 ALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY-------AVKLLLPSLLG  261 (569)
T ss_pred             hhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc-------hhhHhhhhhHH
Confidence            77775 88888888888888899999999999999999999999999999999999999332       27789999999


Q ss_pred             HHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc----------------
Q 002658          173 AMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQV----------------  236 (896)
Q Consensus       173 aL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~v----------------  236 (896)
                      .|.+..+..-.++..-|..+.++++.+..-+++.++|.+.+.|.+.+.++|.+.+.|+--+..+                
T Consensus       262 ~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~  341 (569)
T KOG1242|consen  262 SLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDA  341 (569)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            9987788888899999999999999988889999999999999999999887655553322100                


Q ss_pred             ---------------c-ccC-----cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc--chHHHhhHHHHHHHHH
Q 002658          237 ---------------G-AIA-----PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS--SNLVIDGATSTLTVLE  293 (896)
Q Consensus       237 ---------------g-a~~-----~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~av--Ge~L~Py~~~~I~~LE  293 (896)
                                     + ..|     .|.+..++|.|...|.+.+..+++.++..+..|+..+  +..+.||++.++.-++
T Consensus       342 l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk  421 (569)
T KOG1242|consen  342 LADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLK  421 (569)
T ss_pred             hcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHH
Confidence                           0 011     3556677788888888888899999999999999999  4789999999999999


Q ss_pred             hhhcCCChhhHHHHHHHH-HHHHHhccCC
Q 002658          294 ACRFDKIKPVRDSMNEAL-QLWKKIAGKV  321 (896)
Q Consensus       294 ~~RfDKvKpVRDaA~eAL-e~WK~la~~~  321 (896)
                      ..-.|-+++||.++.+|| .+.+.+...+
T Consensus       422 ~~~~d~~PEvR~vaarAL~~l~e~~g~~~  450 (569)
T KOG1242|consen  422 ENLDDAVPEVRAVAARALGALLERLGEVS  450 (569)
T ss_pred             HHhcCCChhHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999 6666666444

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=5.5e-12  Score=147.57  Aligned_cols=277  Identities=16%  Similarity=0.199  Sum_probs=214.2

Q ss_pred             hHhHHHHHHHHHHHHHcCC---Chh---HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHH
Q 002658           35 HLAMVEMKQKILTSLSKLA---DRD---THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCE  108 (896)
Q Consensus        35 ~~~~~~Lk~rll~~L~KLs---DRD---T~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAe  108 (896)
                      ..++..+.-.|+..|.|-.   |.|   ..+.|-..|..+++....+-+++.|++|.+.+++++|..|.+++++||-+-+
T Consensus       314 ~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~  393 (859)
T KOG1241|consen  314 RQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILE  393 (859)
T ss_pred             HHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhc
Confidence            3456677778888888862   222   7888888999999988877799999999999999999999999999999999


Q ss_pred             Hhc-ccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccC-----------------------------
Q 002658          109 LHS-ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEEN-----------------------------  158 (896)
Q Consensus       109 g~~-d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~-----------------------------  158 (896)
                      |-. +.+.|+.+.-+|.|+..+.||.-.||+++.|++|+++..+.......                             
T Consensus       394 gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~  473 (859)
T KOG1241|consen  394 GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFI  473 (859)
T ss_pred             CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHH
Confidence            866 55899999999999999999999999999999999998775420000                             


Q ss_pred             ------------C------ch-----------------------------------------------------------
Q 002658          159 ------------N------GT-----------------------------------------------------------  161 (896)
Q Consensus       159 ------------~------~~-----------------------------------------------------------  161 (896)
                                  .      ..                                                           
T Consensus       474 ~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q  553 (859)
T KOG1241|consen  474 SLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQ  553 (859)
T ss_pred             HHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence                        0      00                                                           


Q ss_pred             ---------------------------------------hHhhhHHHHHHHHhc-CCHhHHHHHHHHHHHHHHhcCCCCc
Q 002658          162 ---------------------------------------VVGLFVKPLFEAMME-QNKGVQSGAAMCMAKMVECASDPPV  201 (896)
Q Consensus       162 ---------------------------------------~~~~lL~pL~eaL~E-qnk~VQ~gAasALAkIIE~a~d~~~  201 (896)
                                                             ....++..++..|.. ..-.|++-|++|+.++++..+....
T Consensus       554 ~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~  633 (859)
T KOG1241|consen  554 TISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFA  633 (859)
T ss_pred             HHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHH
Confidence                                                   011111111111111 1223666677777777777777777


Q ss_pred             hhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHhc
Q 002658          202 VAFQKLCARICKLLSN-QNFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGST--DWATRKAAADALSALALHS  277 (896)
Q Consensus       202 ~yL~~LlPRL~kLLks-~s~kaK~alL~aIgSLA~-vga~~~pyle~lLp~L~e~Lsdd--DW~lRKaA~EaLgsLA~av  277 (896)
                      .|.+.+.|.|..-|++ ..|++-.++++++|-++. .++.+.||.+.+|..|.++|+++  +..++-+.+-++|-||.++
T Consensus       634 kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaI  713 (859)
T KOG1241|consen  634 KYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAI  713 (859)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHH
Confidence            8889999999999954 688888899999999985 45789999999999999999996  5678888999999999999


Q ss_pred             chHHHhhHHHHHHHHHhh---hcCC--------ChhhHHHHHHHH
Q 002658          278 SNLVIDGATSTLTVLEAC---RFDK--------IKPVRDSMNEAL  311 (896)
Q Consensus       278 Ge~L~Py~~~~I~~LE~~---RfDK--------vKpVRDaA~eAL  311 (896)
                      |..|.||+..++..|+.-   ..|.        +..+|+.+++|.
T Consensus       714 g~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay  758 (859)
T KOG1241|consen  714 GADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAY  758 (859)
T ss_pred             HHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHH
Confidence            999999999999988733   3343        244788755553

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=1.7e-11  Score=148.86  Aligned_cols=275  Identities=17%  Similarity=0.234  Sum_probs=221.4

Q ss_pred             HhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccch
Q 002658           36 LAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS  115 (896)
Q Consensus        36 ~~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~  115 (896)
                      +.-..+|..+|.++.+=.....++--++.+-.+++.+-|+..|-+|.+|.+...++++..|+.|++.|..+.+..+....
T Consensus        75 e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~  154 (1075)
T KOG2171|consen   75 EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ  154 (1075)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc
Confidence            34456788888887666556678888888888888876768999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh----cCCHhHHHHHHHHHHH
Q 002658          116 THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM----EQNKGVQSGAAMCMAK  191 (896)
Q Consensus       116 P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~----Eqnk~VQ~gAasALAk  191 (896)
                      ||+..+++.+.+++.|++..||-+++.+++.++.++-...  ..-..+..++|.++..|.    +.+..+-..++.||..
T Consensus       155 ~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~--~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E  232 (1075)
T KOG2171|consen  155 PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNK--SEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE  232 (1075)
T ss_pred             hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccch--HHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence            9999999999999999998899999999999999992110  112456667777777774    3344445567777777


Q ss_pred             HHHhcCCCCchhHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhcc----ccCcccHHHHHH----------------
Q 002658          192 MVECASDPPVVAFQKLCARICKLLSNQ--NFMAKASLLPVVGSLSQVG----AIAPQSLEPLLQ----------------  249 (896)
Q Consensus       192 IIE~a~d~~~~yL~~LlPRL~kLLks~--s~kaK~alL~aIgSLA~vg----a~~~pyle~lLp----------------  249 (896)
                      +.|..+..+.++|..++.-.+++.++.  ...+|-.+|.+|-+++...    ....+|...+++                
T Consensus       233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~  312 (1075)
T KOG2171|consen  233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS  312 (1075)
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence            777778888899999999999999886  4568888888888876432    112223333333                


Q ss_pred             ---------------------------------------HHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH
Q 002658          250 ---------------------------------------SIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLT  290 (896)
Q Consensus       250 ---------------------------------------~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~  290 (896)
                                                             .+..+|.+.+|.-|++|+-+|+.++...++.+.+.+++++.
T Consensus       313 ~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~  392 (1075)
T KOG2171|consen  313 NEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILP  392 (1075)
T ss_pred             cccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence                                                   34445788999999999999999999999999999999999


Q ss_pred             HHHhhhcCCChhhHHHHHHHHH
Q 002658          291 VLEACRFDKIKPVRDSMNEALQ  312 (896)
Q Consensus       291 ~LE~~RfDKvKpVRDaA~eALe  312 (896)
                      +....-.|.++-||-+|+-|+.
T Consensus       393 ~Vl~~l~DphprVr~AA~naig  414 (1075)
T KOG2171|consen  393 IVLNGLNDPHPRVRYAALNAIG  414 (1075)
T ss_pred             HHHhhcCCCCHHHHHHHHHHHH
Confidence            9999999999999998555544

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.24  E-value=1.2e-09  Score=125.09  Aligned_cols=259  Identities=15%  Similarity=0.135  Sum_probs=190.6

Q ss_pred             HHHHHHHHHHHcCC------ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc
Q 002658           40 EMKQKILTSLSKLA------DRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL  113 (896)
Q Consensus        40 ~Lk~rll~~L~KLs------DRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~  113 (896)
                      +.-..++..|.|-+      |=.....|...|+.+++.....-+.+.|.++.+.+.+++|..|++++++||-+.+|-.+.
T Consensus       321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~  400 (858)
T COG5215         321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCED  400 (858)
T ss_pred             HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHH
Confidence            44556777887751      222777788889999887666569999999999999999999999999999999987655


Q ss_pred             -chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc---c-------------ccCC-----------------
Q 002658          114 -TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG---K-------------EENN-----------------  159 (896)
Q Consensus       114 -I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~---~-------------~e~~-----------------  159 (896)
                       +.++.++.+|.|+....|+.--|.+.+.|++|+|+.++..-   +             ..+.                 
T Consensus       401 ~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h  480 (858)
T COG5215         401 CLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDH  480 (858)
T ss_pred             HHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHh
Confidence             78899999999999999999999999999999999887541   0             0000                 


Q ss_pred             --------chhHhhhHHHHHHHHh------cC------------------------------------------------
Q 002658          160 --------GTVVGLFVKPLFEAMM------EQ------------------------------------------------  177 (896)
Q Consensus       160 --------~~~~~~lL~pL~eaL~------Eq------------------------------------------------  177 (896)
                              ...+..|.+.++.+|.      .+                                                
T Consensus       481 ~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~  560 (858)
T COG5215         481 IAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQI  560 (858)
T ss_pred             hhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                    0011111111222110      00                                                


Q ss_pred             --------CHhHHHHHHHHHHHHHHhcC------------------------------------------CCCchhHHHH
Q 002658          178 --------NKGVQSGAAMCMAKMVECAS------------------------------------------DPPVVAFQKL  207 (896)
Q Consensus       178 --------nk~VQ~gAasALAkIIE~a~------------------------------------------d~~~~yL~~L  207 (896)
                              -..+|.--+.-|+++|...+                                          +....|+++.
T Consensus       561 l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~f  640 (858)
T COG5215         561 LATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKF  640 (858)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                    12233344444555443321                                          1122356778


Q ss_pred             HHHHHHHhcCCchhhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHhcchHHHhh
Q 002658          208 CARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGST--DWATRKAAADALSALALHSSNLVIDG  284 (896)
Q Consensus       208 lPRL~kLLks~s~kaK~alL~aIgSLA~-vga~~~pyle~lLp~L~e~Lsdd--DW~lRKaA~EaLgsLA~avGe~L~Py  284 (896)
                      +|.|.+.|+...+.+-..++..||-++. .|..|.+|.+.+|..|.++|+++  +..++-+.+-+++-||.++|-.|.||
T Consensus       641 iPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~Y  720 (858)
T COG5215         641 IPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESY  720 (858)
T ss_pred             hHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHH
Confidence            8889999987888888888888888885 56889999999999999999985  56788899999999999999999999


Q ss_pred             HHHHHHHHH-hhhcC
Q 002658          285 ATSTLTVLE-ACRFD  298 (896)
Q Consensus       285 ~~~~I~~LE-~~RfD  298 (896)
                      ++.++-.+. .+..|
T Consensus       721 L~~im~L~qqas~~~  735 (858)
T COG5215         721 LDMIMMLFQQASELD  735 (858)
T ss_pred             HHHHHHHHHHHhccC
Confidence            999998876 33344

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.17  E-value=1.2e-09  Score=113.27  Aligned_cols=197  Identities=16%  Similarity=0.212  Sum_probs=142.8

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHh--ccc---chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002658           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELH--SEL---TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY  151 (896)
Q Consensus        77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~--~d~---I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~l  151 (896)
                      |..++..|.....+.+|..|.+++.-|..++.++  .+.   +.++|..++..|+..+.|..+.|-..+|.+++.|+..+
T Consensus         5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l   84 (228)
T PF12348_consen    5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL   84 (228)
T ss_dssp             -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            4455666655567788999999999999999999  233   45566667799999999999999999999999999999


Q ss_pred             hcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHH-HHHHHHHhcCCchhhHHHHHHHH
Q 002658          152 LNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKL-CARICKLLSNQNFMAKASLLPVV  230 (896)
Q Consensus       152 i~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~L-lPRL~kLLks~s~kaK~alL~aI  230 (896)
                      -.. +   ..+...++++|++.+++.++.+...|..||..+++...     |...+ .+.+...+++.+.++|..++.++
T Consensus        85 ~~~-~---~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l  155 (228)
T PF12348_consen   85 GSH-F---EPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWL  155 (228)
T ss_dssp             GGG-G---HHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred             hHh-H---HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            432 2   36688899999999999999999999999999999764     33455 77888889999999999999999


Q ss_pred             HHHHh-cc---ccCc--ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHH
Q 002658          231 GSLSQ-VG---AIAP--QSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVI  282 (896)
Q Consensus       231 gSLA~-vg---a~~~--pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~  282 (896)
                      ..++. .+   ..+.  ..++.+++.|..++.|.+..+|.+|-++|..+....|+...
T Consensus       156 ~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~  213 (228)
T PF12348_consen  156 AIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE  213 (228)
T ss_dssp             HHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred             HHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence            98864 33   2232  24688999999999999999999999999999999995433

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=3.1e-09  Score=123.46  Aligned_cols=250  Identities=16%  Similarity=0.172  Sum_probs=192.6

Q ss_pred             HHHHHHHHHHcCCC--hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhH
Q 002658           41 MKQKILTSLSKLAD--RDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHV  118 (896)
Q Consensus        41 Lk~rll~~L~KLsD--RDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~L  118 (896)
                      +..-+..+|.+.+|  ...++.|....+.+...+++..+..||+.+...+.+.+|+.+.+++.+||.++...++.+.-++
T Consensus       214 iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l  293 (569)
T KOG1242|consen  214 IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL  293 (569)
T ss_pred             HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH
Confidence            44445556666654  4488888999999999998877777777777776666999999999999999998889999999


Q ss_pred             HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh--c
Q 002658          119 TKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC--A  196 (896)
Q Consensus       119 pkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~--a  196 (896)
                      |.|+|.+...|.|..+.||.|+-.++-.+.+.+ +.      ..+..++|-|+++|.+++..+.+    |+..+...  .
T Consensus       294 p~iiP~lsevl~DT~~evr~a~~~~l~~~~svi-dN------~dI~~~ip~Lld~l~dp~~~~~e----~~~~L~~ttFV  362 (569)
T KOG1242|consen  294 PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI-DN------PDIQKIIPTLLDALADPSCYTPE----CLDSLGATTFV  362 (569)
T ss_pred             hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh-cc------HHHHHHHHHHHHHhcCcccchHH----HHHhhcceeee
Confidence            999999999999999999999999999999999 32      23778999999999988866664    23333322  1


Q ss_pred             CCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 002658          197 SDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS-QVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSAL  273 (896)
Q Consensus       197 ~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA-~vg--a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsL  273 (896)
                      .....+-|..|+|-|..-|+..+.-.|-.+...++=++ -+.  ....+|++.++|.|...+.+...++|-.|..+|+.+
T Consensus       363 ~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l  442 (569)
T KOG1242|consen  363 AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGAL  442 (569)
T ss_pred             eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence            33334678899999999998776666655455555443 243  456899999999999999999999999999999999


Q ss_pred             HHhcc-hHHHhhHHHHHHHHHhhhcCCCh
Q 002658          274 ALHSS-NLVIDGATSTLTVLEACRFDKIK  301 (896)
Q Consensus       274 A~avG-e~L~Py~~~~I~~LE~~RfDKvK  301 (896)
                      ...+| ..|..-.+.+.+.+..+..++.+
T Consensus       443 ~e~~g~~~f~d~~p~l~e~~~~~k~~~~~  471 (569)
T KOG1242|consen  443 LERLGEVSFDDLIPELSETLTSEKSLVDR  471 (569)
T ss_pred             HHHHHhhcccccccHHHHhhccchhhhhh
Confidence            99999 55532234444444444444433

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.12  E-value=8.4e-10  Score=126.98  Aligned_cols=215  Identities=15%  Similarity=0.158  Sum_probs=162.9

Q ss_pred             HHHHHHHHHHHHHhcCCC----CC-----HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 002658           57 THQIAIEDLEKTIQTLSQ----ES-----LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVK  127 (896)
Q Consensus        57 T~k~Aa~eLD~La~~L~p----d~-----Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~Ilr  127 (896)
                      -+++++...++++..|+-    +.     +..+|.++++...+.     .-.+-.|+++.-...-...|||+.|+++|++
T Consensus       537 ~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~-----~~il~~f~tv~vsl~~r~kp~l~~ivStiL~  611 (975)
T COG5181         537 YRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV-----GLILPCFSTVLVSLEFRGKPHLSMIVSTILK  611 (975)
T ss_pred             hhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccc-----cEEEecccceeeehhhccCcchHHHHHHHHH
Confidence            577888888888887752    11     444555555443321     2344556666665556679999999999999


Q ss_pred             hhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC-CCCchhHHH
Q 002658          128 RLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS-DPPVVAFQK  206 (896)
Q Consensus       128 rLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~-d~~~~yL~~  206 (896)
                      +|+.+.|.||..+++.+|.|+..+..++.   .+.+..+=..|+|.|++..+.|-.....|+..|....+ ....|-+..
T Consensus       612 ~L~~k~p~vR~~aadl~~sl~~vlk~c~e---~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~  688 (975)
T COG5181         612 LLRSKPPDVRIRAADLMGSLAKVLKACGE---TKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISG  688 (975)
T ss_pred             HhcCCCccHHHHHHHHHHHHHHHHHhcch---HHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhh
Confidence            99999999999999999999999955532   24566677789999999999998776666666665542 223456888


Q ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHH--HHHHHhhCCCCHHHHHHHHHHHHHHHHhcch
Q 002658          207 LCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLL--QSIHECLGSTDWATRKAAADALSALALHSSN  279 (896)
Q Consensus       207 LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lL--p~L~e~LsddDW~lRKaA~EaLgsLA~avGe  279 (896)
                      |+|+|.++|++.+-|+.+..+..+|.|...+....+.-+|.-  --|++.|.+.+.++|+.|.++||.|+.++|+
T Consensus       689 ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP  763 (975)
T COG5181         689 ILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP  763 (975)
T ss_pred             ccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH
Confidence            999999999999999999999999998765533333334433  2377788999999999999999999999994

>PRK09687 putative lyase; Provisional

Probab=99.10  E-value=6.2e-09  Score=113.13  Aligned_cols=184  Identities=11%  Similarity=0.090  Sum_probs=129.7

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHh-hcC
Q 002658           53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKR-LKD  131 (896)
Q Consensus        53 sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~Ilrr-LkD  131 (896)
                      .|...+..|+..|..+-   +++.++.+...    ..+.++.+|..++.+||.+..  .+..   ....++.+... ++|
T Consensus        35 ~d~~vR~~A~~aL~~~~---~~~~~~~l~~l----l~~~d~~vR~~A~~aLg~lg~--~~~~---~~~a~~~L~~l~~~D  102 (280)
T PRK09687         35 HNSLKRISSIRVLQLRG---GQDVFRLAIEL----CSSKNPIERDIGADILSQLGM--AKRC---QDNVFNILNNLALED  102 (280)
T ss_pred             CCHHHHHHHHHHHHhcC---cchHHHHHHHH----HhCCCHHHHHHHHHHHHhcCC--Cccc---hHHHHHHHHHHHhcC
Confidence            45557778887776443   23334444443    246679999999999998743  1111   45667777766 799


Q ss_pred             CChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 002658          132 SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARI  211 (896)
Q Consensus       132 pDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL  211 (896)
                      +++.||..++.+||.+.....        ...+.++..|..++.+.++.|+.+|+.||..+-    +      +..++-|
T Consensus       103 ~d~~VR~~A~~aLG~~~~~~~--------~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----~------~~ai~~L  164 (280)
T PRK09687        103 KSACVRASAINATGHRCKKNP--------LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN----D------EAAIPLL  164 (280)
T ss_pred             CCHHHHHHHHHHHhccccccc--------ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC----C------HHHHHHH
Confidence            999999999999998743221        113456777777888889999999999996442    1      2467888


Q ss_pred             HHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 002658          212 CKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSAL  273 (896)
Q Consensus       212 ~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsL  273 (896)
                      +.+|+++++.+|..++.++|.+ .      ..-+.+++.|...|.|.++.+|+.|+.+|+.+
T Consensus       165 ~~~L~d~~~~VR~~A~~aLg~~-~------~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        165 INLLKDPNGDVRNWAAFALNSN-K------YDNPDIREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             HHHhcCCCHHHHHHHHHHHhcC-C------CCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence            8888888888888888777775 1      11225677788888888888998888888854

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=7.9e-09  Score=121.72  Aligned_cols=263  Identities=14%  Similarity=0.151  Sum_probs=194.2

Q ss_pred             HHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhc--CCCChhhHHHHHHHHHHHHHHhccc------
Q 002658           44 KILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESS--NDPKPAVKKESVRLLALVCELHSEL------  113 (896)
Q Consensus        44 rll~~L~KL--sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~--ss~k~~vRKeAIllLG~IAeg~~d~------  113 (896)
                      ++++.|.+.  .|+..++.|-+.|+++..    ..|+.|+.+|.+-+  ...+...|..|++.|++....-...      
T Consensus         2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~----~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~   77 (859)
T KOG1241|consen    2 ELLELLEKTLSPDQNVRKRAEKQLEQAQS----QNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQ   77 (859)
T ss_pred             cHHHHHHHHcCCCcchHHHHHHHHHHHHh----ccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHH
Confidence            345666555  799999999999999886    24888888887664  3456789999999999875432211      


Q ss_pred             ------chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCC-HhHHHHHH
Q 002658          114 ------TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQN-KGVQSGAA  186 (896)
Q Consensus       114 ------I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqn-k~VQ~gAa  186 (896)
                            -..--.+|...|++.|+-|.|.++.+|.-+++.+|..=+-      ...||.|+..|.....+.. -.+.++++
T Consensus        78 qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP------~n~wp~li~~lv~nv~~~~~~~~k~~sl  151 (859)
T KOG1241|consen   78 QRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELP------QNQWPELIVTLVSNVGEEQASMVKESSL  151 (859)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCc------hhhCHHHHHHHHHhcccccchHHHHHHH
Confidence                  1233578899999999999999999999999999987632      2569999999999996544 46999999


Q ss_pred             HHHHHHHHhc-CCCCchhHHHHHHHHHHHhc-C-CchhhHHHHHHHH-HHHHhccccC--cccHHHHHHHHHHhhCCCCH
Q 002658          187 MCMAKMVECA-SDPPVVAFQKLCARICKLLS-N-QNFMAKASLLPVV-GSLSQVGAIA--PQSLEPLLQSIHECLGSTDW  260 (896)
Q Consensus       187 sALAkIIE~a-~d~~~~yL~~LlPRL~kLLk-s-~s~kaK~alL~aI-gSLA~vga~~--~pyle~lLp~L~e~LsddDW  260 (896)
                      .||.=+||+. ++......+.++--++.-.. . ++..+|-+++.|+ .|+--.++.|  ..--+-+|+...+.-..+|-
T Consensus       152 ealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~  231 (859)
T KOG1241|consen  152 EALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDE  231 (859)
T ss_pred             HHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcH
Confidence            9999999986 33333445555555554443 2 4666776666653 3442222333  22334578888999999999


Q ss_pred             HHHHHHHHHHHHHHHhcchHHHhhHHHHHHHH--HhhhcCCChhhHHHHHHHHHHHHHhccC
Q 002658          261 ATRKAAADALSALALHSSNLVIDGATSTLTVL--EACRFDKIKPVRDSMNEALQLWKKIAGK  320 (896)
Q Consensus       261 ~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~L--E~~RfDKvKpVRDaA~eALe~WK~la~~  320 (896)
                      ++|-+|.+||..|+...-+++.||+.+.+=.+  ...+-| ++   ++|++++|||..|+..
T Consensus       232 ~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~-~d---eValQaiEFWsticeE  289 (859)
T KOG1241|consen  232 EIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSD-ND---EVALQAIEFWSTICEE  289 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cH---HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998854433  344434 34   5999999999988854

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.94  E-value=8.6e-08  Score=118.95  Aligned_cols=240  Identities=18%  Similarity=0.188  Sum_probs=127.6

Q ss_pred             hhhhHhHHHHHHHHHHHHHcC---CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHH
Q 002658           32 LSSHLAMVEMKQKILTSLSKL---ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCE  108 (896)
Q Consensus        32 ~s~~~~~~~Lk~rll~~L~KL---sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAe  108 (896)
                      .+-..+++.|..-.+..|.+.   .|.++|+.|+..|-.+-   +++.++.+.    ..+.++++.+|..|+.+|+.+.+
T Consensus       609 ~~~~~~~~~l~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~---~~~~~~~L~----~aL~D~d~~VR~~Aa~aL~~l~~  681 (897)
T PRK13800        609 SPRILAVLALDAPSVAELAPYLADPDPGVRRTAVAVLTETT---PPGFGPALV----AALGDGAAAVRRAAAEGLRELVE  681 (897)
T ss_pred             hHHHHHHHhccchhHHHHHHHhcCCCHHHHHHHHHHHhhhc---chhHHHHHH----HHHcCCCHHHHHHHHHHHHHHHh
Confidence            334466677766655555444   56779999988887654   333344433    33456778888888888877754


Q ss_pred             Hhccc--chh---------------hHHHH----HHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhH
Q 002658          109 LHSEL--TST---------------HVTKI----ISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFV  167 (896)
Q Consensus       109 g~~d~--I~P---------------~LpkI----L~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL  167 (896)
                      .....  +..               .|..+    ...+++.|+|+|+.||.+++.+|+.+-     .            .
T Consensus       682 ~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~-----~------------~  744 (897)
T PRK13800        682 VLPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVD-----D------------V  744 (897)
T ss_pred             ccCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhccc-----C------------c
Confidence            22110  000               01111    123455666666666666666666431     0            1


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC-------
Q 002658          168 KPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIA-------  240 (896)
Q Consensus       168 ~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~-------  240 (896)
                      +.|..++.+.++.|+.+|+.+|..+-.....        -++.|..++++++..+|.+++.+++.+-......       
T Consensus       745 ~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~--------~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL  816 (897)
T PRK13800        745 ESVAGAATDENREVRIAVAKGLATLGAGGAP--------AGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAAL  816 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccccch--------hHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHh
Confidence            2345556667777777777777665432110        1334445555555555555444444321000000       


Q ss_pred             ---c-------------ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhH
Q 002658          241 ---P-------------QSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVR  304 (896)
Q Consensus       241 ---~-------------pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVR  304 (896)
                         .             -.-+..++.|..+|.|++|.+|+.|+.+|+.+   -+      -...+..|.....|.+..||
T Consensus       817 ~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~------~~~a~~~L~~al~D~d~~Vr  887 (897)
T PRK13800        817 RASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRW---PG------DPAARDALTTALTDSDADVR  887 (897)
T ss_pred             cCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhcc---CC------CHHHHHHHHHHHhCCCHHHH
Confidence               0             00013345566666666677777777666664   11      12234444455557788788


Q ss_pred             HHHHHHHH
Q 002658          305 DSMNEALQ  312 (896)
Q Consensus       305 DaA~eALe  312 (896)
                      ..|.+||+
T Consensus       888 ~~A~~aL~  895 (897)
T PRK13800        888 AYARRALA  895 (897)
T ss_pred             HHHHHHHh
Confidence            88777775

>PRK09687 putative lyase; Provisional

Probab=98.93  E-value=2.4e-08  Score=108.57  Aligned_cols=194  Identities=13%  Similarity=0.067  Sum_probs=144.2

Q ss_pred             CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002658           76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK  155 (896)
Q Consensus        76 ~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~  155 (896)
                      .+..++.+|.    +.+..+|..++.+|+.+..          +.+++.+.+.++|+++.||.+++++||+|...-    
T Consensus        24 ~~~~L~~~L~----d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~----   85 (280)
T PRK09687         24 NDDELFRLLD----DHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK----   85 (280)
T ss_pred             cHHHHHHHHh----CCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc----
Confidence            3556666664    6778999999999986653          556777888899999999999999999864311    


Q ss_pred             ccCCchhHhhhHHHHHHH-HhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 002658          156 EENNGTVVGLFVKPLFEA-MMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS  234 (896)
Q Consensus       156 ~e~~~~~~~~lL~pL~ea-L~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA  234 (896)
                           ......++.|... +.++++.|+..|+.+|..++....    .+...++..+..++.+++..+|..++.++|.+ 
T Consensus        86 -----~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~-  155 (280)
T PRK09687         86 -----RCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI-  155 (280)
T ss_pred             -----cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc-
Confidence                 0024566677766 478899999999999999865332    22456777788888888889998766666543 


Q ss_pred             hccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002658          235 QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL  313 (896)
Q Consensus       235 ~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~  313 (896)
                        +      -+..++.|..+|.+++|.+|..|+.+||.+....        +.++..|.....|.+..||..|..+|..
T Consensus       156 --~------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~  218 (280)
T PRK09687        156 --N------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLAL  218 (280)
T ss_pred             --C------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence              1      1357899999999999999999999999882211        2344444444579999999998887754

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.88  E-value=4.7e-08  Score=112.41  Aligned_cols=243  Identities=21%  Similarity=0.306  Sum_probs=156.7

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCC
Q 002658           53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS  132 (896)
Q Consensus        53 sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDp  132 (896)
                      .|-...+++.-.|..+... +++.+....+.|...+.++++.+|-.|+..|+.++      ....++.+++.|.+.|.|+
T Consensus        54 ~~~~~Krl~yl~l~~~~~~-~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~------~~~~~~~l~~~v~~ll~~~  126 (526)
T PF01602_consen   54 KDLELKRLGYLYLSLYLHE-DPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR------TPEMAEPLIPDVIKLLSDP  126 (526)
T ss_dssp             SSHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-------SHHHHHHHHHHHHHHHHSS
T ss_pred             CCHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc------ccchhhHHHHHHHHHhcCC
Confidence            5666888888888877762 34346667788877788999999999999998877      4455677899999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcccccCCchhHhh-hHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 002658          133 DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGL-FVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARI  211 (896)
Q Consensus       133 Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~-lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL  211 (896)
                      ++.||..|+-++..+.....+        ..+. +++.|...|.++++.|+.+|+.+|..+ ...++.....++.+..+|
T Consensus       127 ~~~VRk~A~~~l~~i~~~~p~--------~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L  197 (526)
T PF01602_consen  127 SPYVRKKAALALLKIYRKDPD--------LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRIL  197 (526)
T ss_dssp             SHHHHHHHHHHHHHHHHHCHC--------CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhccCHH--------HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHh
Confidence            999999999999999988622        2344 789999999999999999999999988 222111115567777777


Q ss_pred             HHHhcCCchhhHHHHHHHHHHHHhcc-----------------------------------ccCcccHHHHHHHHHHhhC
Q 002658          212 CKLLSNQNFMAKASLLPVVGSLSQVG-----------------------------------AIAPQSLEPLLQSIHECLG  256 (896)
Q Consensus       212 ~kLLks~s~kaK~alL~aIgSLA~vg-----------------------------------a~~~pyle~lLp~L~e~Ls  256 (896)
                      .+++..++.-.+..++.++..++...                                   ....+.+..+++.|..+|.
T Consensus       198 ~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~  277 (526)
T PF01602_consen  198 CQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLS  277 (526)
T ss_dssp             HHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHT
T ss_pred             hhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhh
Confidence            77766665544433333333322110                                   0111234455556666666


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658          257 STDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA  318 (896)
Q Consensus       257 ddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la  318 (896)
                      +++..+|-.|+++|..|+...++.+. +..-   .+..+++|.+..||..   +|+....+.
T Consensus       278 s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~---~~~~l~~~~d~~Ir~~---~l~lL~~l~  332 (526)
T PF01602_consen  278 SSDPNVRYIALDSLSQLAQSNPPAVF-NQSL---ILFFLLYDDDPSIRKK---ALDLLYKLA  332 (526)
T ss_dssp             SSSHHHHHHHHHHHHHHCCHCHHHHG-THHH---HHHHHHCSSSHHHHHH---HHHHHHHH-
T ss_pred             cccchhehhHHHHHHHhhcccchhhh-hhhh---hhheecCCCChhHHHH---HHHHHhhcc
Confidence            66666666666666666555532222 2221   2234445555555543   444444444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.81  E-value=1.3e-07  Score=108.90  Aligned_cols=219  Identities=20%  Similarity=0.200  Sum_probs=144.5

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCC
Q 002658           53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS  132 (896)
Q Consensus        53 sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDp  132 (896)
                      .+...+..|+..|-.+.   .++.++.+++.|.....+++|.+||.|++++..+...+++.+.+.   +++.+.+.|.|+
T Consensus        91 ~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~  164 (526)
T PF01602_consen   91 PNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDK  164 (526)
T ss_dssp             SSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHS
T ss_pred             CCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCC
Confidence            34457778887777776   466788889999888889999999999999999999988877654   578888889999


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcccccCCchhHh---------------------------------------hhHHHHHHH
Q 002658          133 DSGMKEACRDSIGSLSKLYLNGKEENNGTVVG---------------------------------------LFVKPLFEA  173 (896)
Q Consensus       133 Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~---------------------------------------~lL~pL~ea  173 (896)
                      ++.|+.+|+.++..+  .......   ....+                                       .++..+...
T Consensus       165 ~~~V~~~a~~~l~~i--~~~~~~~---~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~  239 (526)
T PF01602_consen  165 DPSVVSAALSLLSEI--KCNDDSY---KSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNL  239 (526)
T ss_dssp             SHHHHHHHHHHHHHH--HCTHHHH---TTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHH--ccCcchh---hhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHH
Confidence            999999999988888  1100000   01122                                       233333333


Q ss_pred             HhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHH
Q 002658          174 MMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHE  253 (896)
Q Consensus       174 L~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e  253 (896)
                      |...++.|...++.++..+..     ..+++..+++.|.++|.+++.-+|-.+|.+|..++.   ..++.+...-..++-
T Consensus       240 l~s~~~~V~~e~~~~i~~l~~-----~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~---~~~~~v~~~~~~~~~  311 (526)
T PF01602_consen  240 LQSSSPSVVYEAIRLIIKLSP-----SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQ---SNPPAVFNQSLILFF  311 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSS-----SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCC---HCHHHHGTHHHHHHH
T ss_pred             hhccccHHHHHHHHHHHHhhc-----chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhc---ccchhhhhhhhhhhe
Confidence            333333333333333332221     112677889999999998888888888888888754   224445433333443


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHH
Q 002658          254 CLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVL  292 (896)
Q Consensus       254 ~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~L  292 (896)
                      +..++|..+|+.+++.|..++..  +.+...+..+++++
T Consensus       312 l~~~~d~~Ir~~~l~lL~~l~~~--~n~~~Il~eL~~~l  348 (526)
T PF01602_consen  312 LLYDDDPSIRKKALDLLYKLANE--SNVKEILDELLKYL  348 (526)
T ss_dssp             HHCSSSHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHH
T ss_pred             ecCCCChhHHHHHHHHHhhcccc--cchhhHHHHHHHHH
Confidence            44589999999999999998863  34444455555554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=3.1e-07  Score=108.11  Aligned_cols=210  Identities=20%  Similarity=0.218  Sum_probs=158.8

Q ss_pred             HHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCch
Q 002658           82 NCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGT  161 (896)
Q Consensus        82 s~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~  161 (896)
                      +-+..-+++.+|++||-||++|=-+..-|++.+.|-.|++    ...|.||||.|.+||+.+|-.||+.-.+.       
T Consensus       147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL----~EkLeDpDp~V~SAAV~VICELArKnPkn-------  215 (877)
T KOG1059|consen  147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRL----VEKLEDPDPSVVSAAVSVICELARKNPQN-------  215 (877)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHH----HHhccCCCchHHHHHHHHHHHHHhhCCcc-------
Confidence            3344445788999999999999999999999999988765    56899999999999999999999887443       


Q ss_pred             hHhhhHHHHHHHH--hcCCHhHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-
Q 002658          162 VVGLFVKPLFEAM--MEQNKGVQSGAAMCMAKMVECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVG-  237 (896)
Q Consensus       162 ~~~~lL~pL~eaL--~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~-~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-  237 (896)
                       +-.+-|.+|..|  ..+|+..-.     |-++.-.. .+..|-|. +|+|.|+.++++  .-+...+|.||++++.+. 
T Consensus       216 -yL~LAP~ffkllttSsNNWmLIK-----iiKLF~aL-tplEPRLgKKLieplt~li~s--T~AmSLlYECvNTVVa~s~  286 (877)
T KOG1059|consen  216 -YLQLAPLFYKLLVTSSNNWVLIK-----LLKLFAAL-TPLEPRLGKKLIEPITELMES--TVAMSLLYECVNTVVAVSM  286 (877)
T ss_pred             -cccccHHHHHHHhccCCCeehHH-----HHHHHhhc-cccCchhhhhhhhHHHHHHHh--hHHHHHHHHHHHHheeehh
Confidence             334667778888  356665432     11222111 22335455 699999999984  456678999999997653 


Q ss_pred             -ccCcc---cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002658          238 -AIAPQ---SLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL  313 (896)
Q Consensus       238 -a~~~p---yle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~  313 (896)
                       ...+.   .+..+++-|..++.++|..+|=-.+-||+.|+...+..+..|.+=+++.|.    |++..+|-   +||++
T Consensus       287 s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~----DkD~SIRl---rALdL  359 (877)
T KOG1059|consen  287 SSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLD----DKDESIRL---RALDL  359 (877)
T ss_pred             ccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhc----cCCchhHH---HHHHH
Confidence             22333   444566667778999999999999999999999999999989887777666    99997774   68888


Q ss_pred             HHHhc
Q 002658          314 WKKIA  318 (896)
Q Consensus       314 WK~la  318 (896)
                      .-++.
T Consensus       360 l~gmV  364 (877)
T KOG1059|consen  360 LYGMV  364 (877)
T ss_pred             HHHHh
Confidence            76665

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.77  E-value=3.6e-07  Score=105.36  Aligned_cols=254  Identities=15%  Similarity=0.160  Sum_probs=190.6

Q ss_pred             hHHHHHHHHHHHHHhcCC-C---CCHHHHHHHH-hhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhc
Q 002658           56 DTHQIAIEDLEKTIQTLS-Q---ESLPMLLNCL-YESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLK  130 (896)
Q Consensus        56 DT~k~Aa~eLD~La~~L~-p---d~Lp~fLs~L-~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLk  130 (896)
                      +-++.|+-+|++++..+- .   +++.-++..| .+...++....||.++..+++++-+.+....+|+.+|++-|+.++.
T Consensus        15 ekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~   94 (675)
T KOG0212|consen   15 EKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFS   94 (675)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhcc
Confidence            468999999999998863 2   2377777744 4666778888899999999999888887777799999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCc-h-hHHHHH
Q 002658          131 DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPV-V-AFQKLC  208 (896)
Q Consensus       131 DpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~-~-yL~~Ll  208 (896)
                      |+|..||.-+|+++-.++...-..    .-.+++.++..|.....+.+..|+.| +.-|.+++.+...... . -|+.++
T Consensus        95 D~d~~vRyyACEsLYNiaKv~k~~----v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tFsL~~~i  169 (675)
T KOG0212|consen   95 DQDSQVRYYACESLYNIAKVAKGE----VLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTFSLPEFI  169 (675)
T ss_pred             CccceeeeHhHHHHHHHHHHhccC----cccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhccccccccCHHHHH
Confidence            999999999999999999988322    12456666666666667888899865 4558999987532222 2 377788


Q ss_pred             HHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-h-HHHhhH
Q 002658          209 ARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-N-LVIDGA  285 (896)
Q Consensus       209 PRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e-~L~Py~  285 (896)
                      |-|-.-+...+..+|..+++-|.-+-.+- -.+..|++.+++.|+.+|+|+..++|..+=-+|+.+...+. + ... -.
T Consensus       170 pLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~-d~  248 (675)
T KOG0212|consen  170 PLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM-DY  248 (675)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc-Cc
Confidence            88877777777888999999888874333 34678999999999999999999999888888888777766 2 221 23


Q ss_pred             HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658          286 TSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA  318 (896)
Q Consensus       286 ~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la  318 (896)
                      .+.++++-.-..-..+..+.-   ||.-..+|.
T Consensus       249 ~~~i~vlv~~l~ss~~~iq~~---al~Wi~efV  278 (675)
T KOG0212|consen  249 DDMINVLVPHLQSSEPEIQLK---ALTWIQEFV  278 (675)
T ss_pred             ccchhhccccccCCcHHHHHH---HHHHHHHHh
Confidence            566666665555556644444   444444443

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=1.5e-07  Score=109.02  Aligned_cols=253  Identities=14%  Similarity=0.185  Sum_probs=186.0

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcC--------CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc
Q 002658           40 EMKQKILTSLSKLADRDTHQIAIEDLEKTIQTL--------SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS  111 (896)
Q Consensus        40 ~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L--------~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~  111 (896)
                      ....+++.+|..-.+...+--|+=.|-.|+..-        +...+|.|+.++.    ++...+|+.|+-+||+++.-.+
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~----s~~~~v~eQavWALgNIagds~  184 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS----SPSADVREQAVWALGNIAGDSP  184 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc----CCcHHHHHHHHHHHhccccCCh
Confidence            455677777776655667778888888888631        2333777666666    6778999999999999986443


Q ss_pred             ---ccchhhHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHH
Q 002658          112 ---ELTSTHVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAM  187 (896)
Q Consensus       112 ---d~I~P~LpkIL~~IlrrLkDpDs-~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAas  187 (896)
                         +++..  ..++..++..|..+++ .....+.|+|..|++.- +|.  ...+....+|+.|+..|...++.|..=||.
T Consensus       185 ~~Rd~vl~--~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk-~P~--P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~W  259 (514)
T KOG0166|consen  185 DCRDYVLS--CGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK-NPS--PPFDVVAPILPALLRLLHSTDEEVLTDACW  259 (514)
T ss_pred             HHHHHHHh--hcchHHHHHHhccccchHHHHHHHHHHHHHHcCC-CCC--CcHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence               33332  3456677777777775 33445679999999887 332  233678889999999999999999999999


Q ss_pred             HHHHHHHhcCCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC-cc-cHHHHHHHHHHhhC-CCCHHHH
Q 002658          188 CMAKMVECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIA-PQ-SLEPLLQSIHECLG-STDWATR  263 (896)
Q Consensus       188 ALAkIIE~a~d~~~~yL~-~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~-~p-yle~lLp~L~e~Ls-ddDW~lR  263 (896)
                      ||.-+.+...+.+...++ .+||||+++|.++..+++..+|-+||-++...+.. .. .-..++|+|..+|+ +....+|
T Consensus       260 AlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ik  339 (514)
T KOG0166|consen  260 ALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIK  339 (514)
T ss_pred             HHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHH
Confidence            999999887666555555 59999999999999999988999999965322211 11 11246788888988 4555699


Q ss_pred             HHHHHHHHHHHHhcchHHHhh-----HHHHHHHHHhhhcCCCh
Q 002658          264 KAAADALSALALHSSNLVIDG-----ATSTLTVLEACRFDKIK  301 (896)
Q Consensus       264 KaA~EaLgsLA~avGe~L~Py-----~~~~I~~LE~~RfDKvK  301 (896)
                      |.||=+|+.|+..-.+.+.-.     ++.+|+.|+..-||--|
T Consensus       340 kEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rK  382 (514)
T KOG0166|consen  340 KEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRK  382 (514)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHH
Confidence            999999999998555555533     57778888888887666

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.69  E-value=1.8e-06  Score=104.01  Aligned_cols=222  Identities=16%  Similarity=0.172  Sum_probs=162.6

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHH-HHHHHH-HHHHHhcccchh
Q 002658           39 VEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKE-SVRLLA-LVCELHSELTST  116 (896)
Q Consensus        39 ~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKe-AIllLG-~IAeg~~d~I~P  116 (896)
                      .+++.-++.+|+--. -|....|..+|-.++-  +  .++.||++|++...++  +.|++ -+..|. ++.....+.+.|
T Consensus       856 ~e~~~~iieaf~sp~-edvksAAs~ALGsl~v--g--nl~~yLpfil~qi~sq--pk~QyLLLhSlkevi~~~svd~~~~  928 (1233)
T KOG1824|consen  856 NELKDTIIEAFNSPS-EDVKSAASYALGSLAV--G--NLPKYLPFILEQIESQ--PKRQYLLLHSLKEVIVSASVDGLKP  928 (1233)
T ss_pred             hhhHHHHHHHcCCCh-HHHHHHHHHHhhhhhc--C--chHhHHHHHHHHHhcc--hHhHHHHHHHHHHHHHHhccchhhh
Confidence            345555666665443 5677777777777664  2  4788888888777432  22333 223333 344444577899


Q ss_pred             hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002658          117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA  196 (896)
Q Consensus       117 ~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a  196 (896)
                      +.++|+..+.+...-.+-.+|...++++|.|+-.=  +         ..++|.|-..+....++....+.+|+--.|-+-
T Consensus       929 ~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~e--p---------esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~  997 (1233)
T KOG1824|consen  929 YVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIE--P---------ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQ  997 (1233)
T ss_pred             hHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCC--h---------HHHHHHHHHHhcCCCcchhhhhhheeeeeecCC
Confidence            99999999999999999999999999999887433  2         358888888887777777777777766556555


Q ss_pred             CCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHh------------------hCC
Q 002658          197 SDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHEC------------------LGS  257 (896)
Q Consensus       197 ~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~~pyle~lLp~L~e~------------------Lsd  257 (896)
                      +..+.+|+.+-+..+++++++|..++|..+|.+++|++.-. ......++.++|.|.+-                  ..|
T Consensus       998 p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VD 1077 (1233)
T KOG1824|consen  998 PQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVD 1077 (1233)
T ss_pred             CCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCcccccc
Confidence            66667899999999999999999999999999999988644 34455666777766442                  235


Q ss_pred             CCHHHHHHHHHHHHHHHHhcc
Q 002658          258 TDWATRKAAADALSALALHSS  278 (896)
Q Consensus       258 dDW~lRKaA~EaLgsLA~avG  278 (896)
                      +...+||+|.||++++...-=
T Consensus      1078 dgLd~RKaaFEcmytLLdscl 1098 (1233)
T KOG1824|consen 1078 DGLDLRKAAFECMYTLLDSCL 1098 (1233)
T ss_pred             chHHHHHHHHHHHHHHHHhhh
Confidence            679999999999999876543

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.68  E-value=1.9e-06  Score=99.62  Aligned_cols=278  Identities=15%  Similarity=0.135  Sum_probs=216.8

Q ss_pred             hHHHHHHHHHHHHHcC-CChh-HHHHHHHHHHHHHhcCCC-CC----HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH
Q 002658           37 AMVEMKQKILTSLSKL-ADRD-THQIAIEDLEKTIQTLSQ-ES----LPMLLNCLYESSNDPKPAVKKESVRLLALVCEL  109 (896)
Q Consensus        37 ~~~~Lk~rll~~L~KL-sDRD-T~k~Aa~eLD~La~~L~p-d~----Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg  109 (896)
                      +.+.....+..+|-|+ +|.| .-+-|++-||+++..+.. ++    ++.|++.|.+.+...++..|..-+.-|..+=..
T Consensus       118 ~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~  197 (675)
T KOG0212|consen  118 EVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV  197 (675)
T ss_pred             CcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC
Confidence            3345556667777777 4544 678899999999987632 22    899999999999888999999988888666554


Q ss_pred             hcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHH
Q 002658          110 HSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCM  189 (896)
Q Consensus       110 ~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasAL  189 (896)
                      -+-.+.-|+|.+++-+...|.|+...||..|-.+++.+-..+-..+ .  .-......+.|..-+.++++..|.-|..=+
T Consensus       198 P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P-~--s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi  274 (675)
T KOG0212|consen  198 PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP-S--SMDYDDMINVLVPHLQSSEPEIQLKALTWI  274 (675)
T ss_pred             CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc-c--ccCcccchhhccccccCCcHHHHHHHHHHH
Confidence            4344788999999999999999999999999999999999984322 1  113566777777888889999999998888


Q ss_pred             HHHHHhcCCCCchhHHHHHHHHHHHhcCCchh-hHHHHHHHH---HHHHhcc-ccCcccHHHHHHHHHHhhCCCCHHHHH
Q 002658          190 AKMVECASDPPVVAFQKLCARICKLLSNQNFM-AKASLLPVV---GSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRK  264 (896)
Q Consensus       190 AkIIE~a~d~~~~yL~~LlPRL~kLLks~s~k-aK~alL~aI---gSLA~vg-a~~~pyle~lLp~L~e~LsddDW~lRK  264 (896)
                      ..++.-.+....+|+..++..+++++.+...+ +|..+-..-   .++.... ..-.--+..+|..|...++++.-.+|.
T Consensus       275 ~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri  354 (675)
T KOG0212|consen  275 QEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRI  354 (675)
T ss_pred             HHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHH
Confidence            88887778888899999999999999876554 454333332   2222111 111123458999999999999999999


Q ss_pred             HHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhccC
Q 002658          265 AAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (896)
Q Consensus       265 aA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~~  320 (896)
                      +|.+=+..+-...|..+.-|..++...|....-|...   +++..+|++...|+..
T Consensus       355 ~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd---~vvl~~L~lla~i~~s  407 (675)
T KOG0212|consen  355 AVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSD---EVVLLALSLLASICSS  407 (675)
T ss_pred             HHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchh---HHHHHHHHHHHHHhcC
Confidence            9999999999999977777999998888888889888   8899999999999933

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=5e-07  Score=112.72  Aligned_cols=226  Identities=12%  Similarity=0.120  Sum_probs=175.5

Q ss_pred             HHHHHHHHHHhcCC-CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHH
Q 002658           60 IAIEDLEKTIQTLS-QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKE  138 (896)
Q Consensus        60 ~Aa~eLD~La~~L~-pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~  138 (896)
                      ...++|=.+|..|+ |+.+--||..-   ..+.-|..|+-|-.-||+|++-.++.+.||+++++|-+.|-=-||+..|++
T Consensus       940 sTYKELc~LASdl~qPdLVYKFM~LA---nh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~ 1016 (1702)
T KOG0915|consen  940 STYKELCNLASDLGQPDLVYKFMQLA---NHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQD 1016 (1702)
T ss_pred             hHHHHHHHHHhhcCChHHHHHHHHHh---hhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHH
Confidence            34678889999886 43344455432   245679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHHhcC
Q 002658          139 ACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD-PPVVAFQKLCARICKLLSN  217 (896)
Q Consensus       139 Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d-~~~~yL~~LlPRL~kLLks  217 (896)
                      +--..=++|...- +..   .+.++.++++-|+..|.....+|.+++|.||.-++..-+. .+.+.++++-..++...++
T Consensus      1017 aM~sIW~~Li~D~-k~~---vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDD 1092 (1702)
T KOG0915|consen 1017 AMTSIWNALITDS-KKV---VDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDD 1092 (1702)
T ss_pred             HHHHHHHHhccCh-HHH---HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence            8887777666442 111   3467889999999999999999999999999999997432 3345677777777777776


Q ss_pred             CchhhHHH---HHHHHHHHH-hcc-----ccCcccHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHH
Q 002658          218 QNFMAKAS---LLPVVGSLS-QVG-----AIAPQSLEPLLQSIHEC-LGSTDWATRKAAADALSALALHSSNLVIDGATS  287 (896)
Q Consensus       218 ~s~kaK~a---lL~aIgSLA-~vg-----a~~~pyle~lLp~L~e~-LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~  287 (896)
                      =+.-+|.+   +..+|+.+. ..+     +.....++.++|+|.+- ..++-.++|+.++-++..|+...|..+.||++.
T Consensus      1093 IKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~ 1172 (1702)
T KOG0915|consen 1093 IKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPK 1172 (1702)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhH
Confidence            55567765   444555552 222     34567888899998873 337788999999999999999999999999888


Q ss_pred             HHHHH
Q 002658          288 TLTVL  292 (896)
Q Consensus       288 ~I~~L  292 (896)
                      +|..|
T Consensus      1173 LIp~l 1177 (1702)
T KOG0915|consen 1173 LIPLL 1177 (1702)
T ss_pred             HHHHH
Confidence            77544

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.61  E-value=9.9e-07  Score=109.68  Aligned_cols=147  Identities=17%  Similarity=0.229  Sum_probs=96.4

Q ss_pred             HHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchh
Q 002658           83 CLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTV  162 (896)
Q Consensus        83 ~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~  162 (896)
                      .|.+.+.++++.+|+.|+..|+.+.          .+.+++.|++.|.|+++.||.+|+.+|+.|.....          
T Consensus       625 ~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------  684 (897)
T PRK13800        625 ELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----------  684 (897)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------
Confidence            3334445888999999999999764          25568889999999999999999999988865441          


Q ss_pred             HhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcc
Q 002658          163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQ  242 (896)
Q Consensus       163 ~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~p  242 (896)
                         -.+.|...|.++++.|+.+|+.+|..+--  .+         ...|+++|++++..+|..++.+++.+-.       
T Consensus       685 ---~~~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~---------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-------  743 (897)
T PRK13800        685 ---PAPALRDHLGSPDPVVRAAALDVLRALRA--GD---------AALFAAALGDPDHRVRIEAVRALVSVDD-------  743 (897)
T ss_pred             ---chHHHHHHhcCCCHHHHHHHHHHHHhhcc--CC---------HHHHHHHhcCCCHHHHHHHHHHHhcccC-------
Confidence               11345566666788888877777766421  01         1234556677777777666666555310       


Q ss_pred             cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 002658          243 SLEPLLQSIHECLGSTDWATRKAAADALSALAL  275 (896)
Q Consensus       243 yle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~  275 (896)
                           .+.|..+|.|+++.+|.+|+++|+.+..
T Consensus       744 -----~~~l~~~l~D~~~~VR~~aa~aL~~~~~  771 (897)
T PRK13800        744 -----VESVAGAATDENREVRIAVAKGLATLGA  771 (897)
T ss_pred             -----cHHHHHHhcCCCHHHHHHHHHHHHHhcc
Confidence                 0223445666666666666666665543

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.60  E-value=2.6e-07  Score=86.02  Aligned_cols=94  Identities=17%  Similarity=0.200  Sum_probs=81.3

Q ss_pred             hHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH
Q 002658           95 VKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM  174 (896)
Q Consensus        95 vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL  174 (896)
                      .|+.++..|..++.+.+..+.+|+++|++.|+..+.|+|+.||..||+++..++...-..    .-.++++++..|+..+
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~----~l~~f~~IF~~L~kl~   77 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE----ILPYFNEIFDALCKLS   77 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            599999999999999999999999999999999999999999999999999999988322    2245777888888888


Q ss_pred             hcCCHhHHHHHHHHHHHHH
Q 002658          175 MEQNKGVQSGAAMCMAKMV  193 (896)
Q Consensus       175 ~Eqnk~VQ~gAasALAkII  193 (896)
                      .|+++.||.||.. |.+++
T Consensus        78 ~D~d~~Vr~~a~~-Ld~ll   95 (97)
T PF12755_consen   78 ADPDENVRSAAEL-LDRLL   95 (97)
T ss_pred             cCCchhHHHHHHH-HHHHh
Confidence            9999999998854 45443

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.60  E-value=1.3e-06  Score=90.69  Aligned_cols=174  Identities=16%  Similarity=0.204  Sum_probs=127.8

Q ss_pred             CChhHHHHHHHHHHHHHhcC-CCCCHHHHHH-------HHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHH
Q 002658           53 ADRDTHQIAIEDLEKTIQTL-SQESLPMLLN-------CLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISH  124 (896)
Q Consensus        53 sDRDT~k~Aa~eLD~La~~L-~pd~Lp~fLs-------~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~  124 (896)
                      .|=+.+.-|+..|..++..- +.+..+.|+.       .|.....+..+.+-+.|+.+++.++...+..+.||++.++|.
T Consensus        19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~   98 (228)
T PF12348_consen   19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPP   98 (228)
T ss_dssp             SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence            56668889999999998754 2233344433       444556778888999999999999999999999999999999


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhh-HHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC---CCC
Q 002658          125 IVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLF-VKPLFEAMMEQNKGVQSGAAMCMAKMVECAS---DPP  200 (896)
Q Consensus       125 IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~l-L~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~---d~~  200 (896)
                      |++++.|+...||.+|..++..|+.++.         ..+.+ +..+...+.+.|+.+...++.+|..+++..+   ...
T Consensus        99 Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   99 LLKKLGDSKKFIREAANNALDAIIESCS---------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHGGG---HHHHHHHHHHHHHHHTTS----------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHccccHHHHHHHHHHHHHHHHHCC---------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            9999999999999999999999999881         12345 6666667788999999999999999999876   211


Q ss_pred             c--hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 002658          201 V--VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ  235 (896)
Q Consensus       201 ~--~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~  235 (896)
                      .  ..++.+++-+.+++.+++..+|.++-.++..+..
T Consensus       170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            1  2468899999999999999999998888888753

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=98.57  E-value=4.4e-06  Score=109.24  Aligned_cols=256  Identities=18%  Similarity=0.126  Sum_probs=172.7

Q ss_pred             CCChhHHHHHHHHHHHHHhc-------C-CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc---chhhHHH
Q 002658           52 LADRDTHQIAIEDLEKTIQT-------L-SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL---TSTHVTK  120 (896)
Q Consensus        52 LsDRDT~k~Aa~eLD~La~~-------L-~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~---I~P~Lpk  120 (896)
                      ..+.|.+..++..|..+...       + ....++.|+.+|.    +.+...++.++.+|++++.+..+.   +..  .-
T Consensus       415 ~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~----s~s~~iQ~~A~~~L~nLa~~ndenr~aIie--aG  488 (2102)
T PLN03200        415 MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLG----LSSEQQQEYAVALLAILTDEVDESKWAITA--AG  488 (2102)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHc----CCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CC
Confidence            35678999999888777642       0 1113555555444    567889999999999999866542   222  34


Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhH--hhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC
Q 002658          121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVV--GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD  198 (896)
Q Consensus       121 IL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~--~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d  198 (896)
                      .+|.+++.|..+++.++..|+|+|+.|+.+-.+     ....+  ...+++|++.|...++.+|.-|+.+|..++.....
T Consensus       489 aIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~q-----ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~  563 (2102)
T PLN03200        489 GIPPLVQLLETGSQKAKEDSATVLWNLCCHSED-----IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA  563 (2102)
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHH-----HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch
Confidence            678888999999999999999999999863210     01112  24789999999888999999999999999754321


Q ss_pred             CCc-hh------------------H-------------------HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-cc
Q 002658          199 PPV-VA------------------F-------------------QKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AI  239 (896)
Q Consensus       199 ~~~-~y------------------L-------------------~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~  239 (896)
                      ... ++                  |                   +.-+|.|..+|++++...|..+..+|..++... ..
T Consensus       564 ~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~  643 (2102)
T PLN03200        564 ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDL  643 (2102)
T ss_pred             hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHH
Confidence            100 00                  0                   124677788888877777777777777775422 11


Q ss_pred             -CcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhh-HHHHHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 002658          240 -APQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDG-ATSTLTVLEACRFDKIKPVRDSMNEALQLWKK  316 (896)
Q Consensus       240 -~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py-~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~  316 (896)
                       -.-.....+|+|...|.+.+..+|+.|+-+|+.++.... +...-+ ...+|..|-...-+.+..+++.+.+||...-.
T Consensus       644 ~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~  723 (2102)
T PLN03200        644 CESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS  723 (2102)
T ss_pred             HHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc
Confidence             112334567889999999999999999999999997444 222222 23456666555556776677777666666544


Q ss_pred             hc
Q 002658          317 IA  318 (896)
Q Consensus       317 la  318 (896)
                      -+
T Consensus       724 ~~  725 (2102)
T PLN03200        724 DP  725 (2102)
T ss_pred             Cc
Confidence            33

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.52  E-value=9.7e-06  Score=94.99  Aligned_cols=262  Identities=16%  Similarity=0.224  Sum_probs=179.5

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhH--HHH
Q 002658           45 ILTSLSKLADRDTHQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHV--TKI  121 (896)
Q Consensus        45 ll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~-Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~L--pkI  121 (896)
                      +..||+. .+++....+..-|+++...+.+.. ++.+.+.|..-+.++++.+|+-++..++.+++.. +....-+  +.+
T Consensus        43 lf~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l  120 (503)
T PF10508_consen   43 LFDCLNT-SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNEL  120 (503)
T ss_pred             HHHHHhh-cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccH
Confidence            4555653 478888999999999999887766 8889999999999999999999999999988643 3322222  567


Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHh-hhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC
Q 002658          122 ISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVG-LFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP  200 (896)
Q Consensus       122 L~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~-~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~  200 (896)
                      ++.|+..|.|+|..|..+|..+|..|+.+-  .+.   ...++ .++..|...+...+..+..-+..++..+....++. 
T Consensus       121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~---~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~-  194 (503)
T PF10508_consen  121 LPLIIQCLRDPDLSVAKAAIKALKKLASHP--EGL---EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA-  194 (503)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhH---HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH-
Confidence            999999999999999999999999998743  110   01111 12455555555557777777777766666543322 


Q ss_pred             chhHHH--HHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHH--HHHHHHHHhhCCC--CH---HHH-HHHHHHH
Q 002658          201 VVAFQK--LCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLE--PLLQSIHECLGST--DW---ATR-KAAADAL  270 (896)
Q Consensus       201 ~~yL~~--LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle--~lLp~L~e~Lsdd--DW---~lR-KaA~EaL  270 (896)
                      ..++..  +++.+++.|++.+.-+|..+++++..++... ....|+.  .+++.|.+.+.+.  |.   .+. -..+..+
T Consensus       195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~-~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~  273 (503)
T PF10508_consen  195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP-HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF  273 (503)
T ss_pred             HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh-hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence            244444  8999999999999999999999999997521 1122222  2455555555431  22   111 2233566


Q ss_pred             HHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658          271 SALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA  318 (896)
Q Consensus       271 gsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la  318 (896)
                      +.|+...+..+....+.++..+..+-...+...+.+   |++.|..|+
T Consensus       274 g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~---A~dtlg~ig  318 (503)
T PF10508_consen  274 GNLARVSPQEVLELYPAFLERLFSMLESQDPTIREV---AFDTLGQIG  318 (503)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHH---HHHHHHHHh
Confidence            778877554444445667777766655667767777   677777777

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=98.51  E-value=9.4e-06  Score=106.30  Aligned_cols=256  Identities=15%  Similarity=0.194  Sum_probs=184.6

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc-chhh---HHHHHHHHHHh
Q 002658           53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-TSTH---VTKIISHIVKR  128 (896)
Q Consensus        53 sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~-I~P~---LpkIL~~Ilrr  128 (896)
                      +|.++++.|+..|-.++..-+++.++.++..|.    ++++..+..++.+||.+....... +...   -...++.|+..
T Consensus       542 gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl----sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L  617 (2102)
T PLN03200        542 GGPKGQEIAAKTLTKLVRTADAATISQLTALLL----GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL  617 (2102)
T ss_pred             CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhc----CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH
Confidence            678899999999999987655556777665543    556788888999999997744432 1111   13578899999


Q ss_pred             hcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCC-CchhHHH-
Q 002658          129 LKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDP-PVVAFQK-  206 (896)
Q Consensus       129 LkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~-~~~yL~~-  206 (896)
                      |+.++..++..|+|+|..|+..-.+..   ..-.....++||+..|...+..++..||.||..+..+.... ...++.. 
T Consensus       618 L~sgs~~ikk~Aa~iLsnL~a~~~d~~---~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~G  694 (2102)
T PLN03200        618 LSSSKEETQEKAASVLADIFSSRQDLC---ESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAED  694 (2102)
T ss_pred             HcCCCHHHHHHHHHHHHHHhcCChHHH---HHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcC
Confidence            999999999999999999986331110   01223457899999999889999999999999999754332 2234443 


Q ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC-cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHh
Q 002658          207 LCARICKLLSNQNFMAKASLLPVVGSLSQVGAIA-PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS--NLVID  283 (896)
Q Consensus       207 LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~-~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG--e~L~P  283 (896)
                      .+|.|+++|++.+..++..++.+|..++..+... .-.-...++.|.++|.+.+...|+.|+-+|..|+...+  +.|..
T Consensus       695 aV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~  774 (2102)
T PLN03200        695 AIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKD  774 (2102)
T ss_pred             CHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHH
Confidence            7899999999999999999999999998654111 11123458999999999999999999999999999988  44766


Q ss_pred             hHHHH------HHHHHhhhcCCChhhHHHHHHHHHHHHHhccC
Q 002658          284 GATST------LTVLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (896)
Q Consensus       284 y~~~~------I~~LE~~RfDKvKpVRDaA~eALe~WK~la~~  320 (896)
                      |+..+      +.+|..-.+|.+.     ..+||+....++..
T Consensus       775 ~~~~~g~v~~l~~~L~~~~~~~~~-----~~~al~~l~~l~~~  812 (2102)
T PLN03200        775 SVQCRGTVLALVDLLNSTDLDSSA-----TSEALEALALLART  812 (2102)
T ss_pred             HHHHhCcHHHHHHHHhcCCcchhh-----HHHHHHHHHHHHhh
Confidence            65444      4444444444322     23566666666654

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.48  E-value=1.1e-07  Score=78.17  Aligned_cols=55  Identities=22%  Similarity=0.401  Sum_probs=53.1

Q ss_pred             hhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 002658           93 PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSL  147 (896)
Q Consensus        93 ~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~L  147 (896)
                      |.+|+.|+.+||.+++.+++.+.||++++++.++..|+|+++.||.+|+++||+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            7899999999999999999999999999999999999999999999999999975

...

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.47  E-value=3.6e-05  Score=93.26  Aligned_cols=238  Identities=13%  Similarity=0.151  Sum_probs=184.3

Q ss_pred             HHHHHHHHhhhc--CCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002658           77 LPMLLNCLYESS--NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG  154 (896)
Q Consensus        77 Lp~fLs~L~es~--ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~  154 (896)
                      ++.|++.+.+.+  +.+...+|=+++-.++-+...+|+.+.++=..|+-+++..|.-+...||.-++.+||.++..+-  
T Consensus       129 ~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~--  206 (1233)
T KOG1824|consen  129 CKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN--  206 (1233)
T ss_pred             HHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC--
Confidence            556666666554  3455668889999999999999999999999999999999999999999999999999999982  


Q ss_pred             cccCCchhHhhhHHHHHHHHhcCCHhHH-HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh---cCCchhhHHHHHHHH
Q 002658          155 KEENNGTVVGLFVKPLFEAMMEQNKGVQ-SGAAMCMAKMVECASDPPVVAFQKLCARICKLL---SNQNFMAKASLLPVV  230 (896)
Q Consensus       155 ~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ-~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLL---ks~s~kaK~alL~aI  230 (896)
                           ...+..+..-|+..|.......+ -.-..||+.+|..++.....++++++|-+....   +..+-..|+.+|.++
T Consensus       207 -----~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQal  281 (1233)
T KOG1824|consen  207 -----RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQAL  281 (1233)
T ss_pred             -----HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHH
Confidence                 24566777777777754433333 457889999999998888889999999999888   667788999999999


Q ss_pred             HHHHhcc-ccCcccHHHHHHHHHHhhC-------------------C-------------C--CHHHHHHHHHHHHHHHH
Q 002658          231 GSLSQVG-AIAPQSLEPLLQSIHECLG-------------------S-------------T--DWATRKAAADALSALAL  275 (896)
Q Consensus       231 gSLA~vg-a~~~pyle~lLp~L~e~Ls-------------------d-------------d--DW~lRKaA~EaLgsLA~  275 (896)
                      +++..-. ....||.+.++..+.++++                   +             +  .|-+|++|+.||.++-.
T Consensus       282 e~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~Is  361 (1233)
T KOG1824|consen  282 ESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVIS  361 (1233)
T ss_pred             HHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHh
Confidence            9997544 4567888888888777641                   0             0  39999999999999999


Q ss_pred             hcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHH-HHHHHHhccCC
Q 002658          276 HSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEA-LQLWKKIAGKV  321 (896)
Q Consensus       276 avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eA-Le~WK~la~~~  321 (896)
                      ...+.+..+.+.+-.++-..-.+.-+.||--+.++ +.+++.++.+-
T Consensus       362 SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~  408 (1233)
T KOG1824|consen  362 SRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVI  408 (1233)
T ss_pred             ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCc
Confidence            88888887776666665544445556677555555 45566666553

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.44  E-value=2.6e-05  Score=89.15  Aligned_cols=224  Identities=14%  Similarity=0.184  Sum_probs=168.3

Q ss_pred             hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHHHhcccc
Q 002658           37 AMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES-LPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHSELT  114 (896)
Q Consensus        37 ~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~-Lp~fLs~L~es~-ss~k~~vRKeAIllLG~IAeg~~d~I  114 (896)
                      .+.++.++++.......+...+..+.+.|-.+++.++.+. +..+|..+.... .......|..++.++.-++.+.--.-
T Consensus       186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~  265 (415)
T PF12460_consen  186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG  265 (415)
T ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence            5566888888888888888888888999999998876544 778888887766 55667788888888877777766555


Q ss_pred             hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002658          115 STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE  194 (896)
Q Consensus       115 ~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE  194 (896)
                      .|.-.+++..++..|.|  +.+...++.+++.|.... +...   ...+...+++|+.                      
T Consensus       266 ~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~-~~~l---~~~~~a~vklLyk----------------------  317 (415)
T PF12460_consen  266 HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDS-DDVL---NKENHANVKLLYK----------------------  317 (415)
T ss_pred             CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCc-HHhc---CccccchhhhHHh----------------------
Confidence            56666777778888877  556666776666666553 1100   0001111111111                      


Q ss_pred             hcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002658          195 CASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSA  272 (896)
Q Consensus       195 ~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vg-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgs  272 (896)
                            .-++..++|+|+..++..+...|...|.++..+.. +- ....++++.++|.|++.|+.+|..+|.+++++|..
T Consensus       318 ------QR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~  391 (415)
T PF12460_consen  318 ------QRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKM  391 (415)
T ss_pred             ------HHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                  13577889999999988766688888989988864 33 56789999999999999999999999999999999


Q ss_pred             HHHhcchHHHhhHHHHHHHHHh
Q 002658          273 LALHSSNLVIDGATSTLTVLEA  294 (896)
Q Consensus       273 LA~avGe~L~Py~~~~I~~LE~  294 (896)
                      +...-++.+.+|+..+|..|..
T Consensus       392 ~l~~~~~~i~~hl~sLI~~LL~  413 (415)
T PF12460_consen  392 ILEEAPELISEHLSSLIPRLLK  413 (415)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999987753

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.43  E-value=3.6e-05  Score=89.33  Aligned_cols=272  Identities=17%  Similarity=0.180  Sum_probs=191.2

Q ss_pred             hHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhc-CCCCCHHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHHHhc-
Q 002658           35 HLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQT-LSQESLPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHS-  111 (896)
Q Consensus        35 ~~~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~-L~pd~Lp~fLs~L~es~-ss~k~~vRKeAIllLG~IAeg~~-  111 (896)
                      |+.--+.|-..++.|... ......+|++.|-.|+.. |+....|.|+..+.... ..+....+.+++..+|++++... 
T Consensus        89 ~E~k~qvK~~al~aL~s~-epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P  167 (858)
T COG5215          89 HESKEQVKGMALRALKSP-EPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP  167 (858)
T ss_pred             HHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH
Confidence            344444555555555433 344778889999999964 77778999999888765 44556688999999999999765 


Q ss_pred             ccchhhHHHHHHHHHHh-hcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHH
Q 002658          112 ELTSTHVTKIISHIVKR-LKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCM  189 (896)
Q Consensus       112 d~I~P~LpkIL~~Ilrr-LkD-pDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasAL  189 (896)
                      +.+...-.-|+-.|+.+ ++. +++.||-|+..++..-...+ +..+. .+....-|+....++-..++..+|.+|+.||
T Consensus       168 e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv-~~nf~-~E~erNy~mqvvceatq~~d~e~q~aafgCl  245 (858)
T COG5215         168 EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFV-QGNFC-YEEERNYFMQVVCEATQGNDEELQHAAFGCL  245 (858)
T ss_pred             HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH-HHhhc-chhhhchhheeeehhccCCcHHHHHHHHHHH
Confidence            34544455555555555 554 67899999888877633333 22111 1123455677777777888999999999999


Q ss_pred             HHHHHhcCCCCchhHHH-HHHHHHHHhcCCchhhHHHHHHHHHHHHh----cc---ccCc-----------ccHHHHHHH
Q 002658          190 AKMVECASDPPVVAFQK-LCARICKLLSNQNFMAKASLLPVVGSLSQ----VG---AIAP-----------QSLEPLLQS  250 (896)
Q Consensus       190 AkIIE~a~d~~~~yL~~-LlPRL~kLLks~s~kaK~alL~aIgSLA~----vg---a~~~-----------pyle~lLp~  250 (896)
                      -++.----+.+.+|+++ |...+...+++++.+++..++..-+++..    ++   ..++           ..+..++|.
T Consensus       246 ~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~  325 (858)
T COG5215         246 NKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPE  325 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHH
Confidence            99986444444577776 45566677799999999888888877642    11   1122           225568899


Q ss_pred             HHHhhCC-------CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 002658          251 IHECLGS-------TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQ  312 (896)
Q Consensus       251 L~e~Lsd-------dDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe  312 (896)
                      |+..|..       +||..-++|.-||.-.|...|+++.   .+++...|..-....-.-||++.-|+.
T Consensus       326 lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~---~pVl~FvEqni~~~~w~nreaavmAfG  391 (858)
T COG5215         326 LLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIM---RPVLGFVEQNIRSESWANREAAVMAFG  391 (858)
T ss_pred             HHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhH---HHHHHHHHHhccCchhhhHHHHHHHhh
Confidence            9988754       6899999999999999999998654   457888886666667778888655543

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=3.6e-06  Score=97.81  Aligned_cols=262  Identities=16%  Similarity=0.115  Sum_probs=182.2

Q ss_pred             CChhHHHHHHHHHHHHHhcC--------CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-ccchhhHHHHHH
Q 002658           53 ADRDTHQIAIEDLEKTIQTL--------SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTSTHVTKIIS  123 (896)
Q Consensus        53 sDRDT~k~Aa~eLD~La~~L--------~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~-d~I~P~LpkIL~  123 (896)
                      .+.+.+.+|+-.|-.++..=        ....+.++|..|....   +-...+.+.-+|.++|++.. -.....+..++|
T Consensus       164 ~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~---~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp  240 (514)
T KOG0166|consen  164 PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSD---KLSMLRNATWTLSNLCRGKNPSPPFDVVAPILP  240 (514)
T ss_pred             CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcccc---chHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence            45668888888887777531        2334667777666433   23567788899999999874 334567999999


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchh
Q 002658          124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVA  203 (896)
Q Consensus       124 ~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~y  203 (896)
                      .|.+.|.+.|+.|..=+||+|+-|+..--+..   ..-.-..+++.|.+.|......|+..|..++-.|+-+.+.+....
T Consensus       241 ~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~i---q~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~v  317 (514)
T KOG0166|consen  241 ALLRLLHSTDEEVLTDACWALSYLTDGSNEKI---QMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVV  317 (514)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcCChHHH---HHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHH
Confidence            99999999999999999999998875441110   001223478899999999999999888888888776655544444


Q ss_pred             HH-HHHHHHHHHhc-CCchhhHHHHHHHHHHHHhcc--ccCcccHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002658          204 FQ-KLCARICKLLS-NQNFMAKASLLPVVGSLSQVG--AIAPQSLE-PLLQSIHECLGSTDWATRKAAADALSALALHSS  278 (896)
Q Consensus       204 L~-~LlPRL~kLLk-s~s~kaK~alL~aIgSLA~vg--a~~~pyle-~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG  278 (896)
                      ++ .++|.|..+|. ++.-++|..+.=.|+=|. +|  ......++ .++|.|..+|+..+..+||.|+=+++.++..--
T Consensus       318 i~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNIt-AG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~  396 (514)
T KOG0166|consen  318 INSGALPVLSNLLSSSPKESIKKEACWTISNIT-AGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT  396 (514)
T ss_pred             HhcChHHHHHHHhccCcchhHHHHHHHHHHHhh-cCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence            44 58899999998 565555553333444432 23  22222222 688999999999999999999999999887766


Q ss_pred             hHHHhhH--HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhccCC
Q 002658          279 NLVIDGA--TSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKV  321 (896)
Q Consensus       279 e~L~Py~--~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~~~  321 (896)
                      ..-..|+  ..||+.|.....=++..+-.+++.+|+....++..+
T Consensus       397 ~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~  441 (514)
T KOG0166|consen  397 PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAE  441 (514)
T ss_pred             HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHh
Confidence            6566675  456776654443333333467888888888887553

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.42  E-value=1.7e-05  Score=92.90  Aligned_cols=169  Identities=13%  Similarity=0.185  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc
Q 002658           97 KESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME  176 (896)
Q Consensus        97 KeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E  176 (896)
                      ..++.+|+.+.....  +..-++.+.+++.++|..|++.||.-|++.|++++.+-.... +  --.-..+++.++.+|.+
T Consensus        56 ~~~~~iL~~~l~~~~--~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~-~--~~~~~~l~~~i~~~L~~  130 (503)
T PF10508_consen   56 ELICDILKRLLSALS--PDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAA-Q--LLVDNELLPLIIQCLRD  130 (503)
T ss_pred             HHHHHHHHHHHhccC--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHH-H--HhcCccHHHHHHHHHcC
Confidence            344445555444322  222388999999999999999999999999998875431100 0  00124578899999999


Q ss_pred             CCHhHHHHHHHHHHHHHHhcCCCCchhHHHH-----HHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHH--HHH
Q 002658          177 QNKGVQSGAAMCMAKMVECASDPPVVAFQKL-----CARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEP--LLQ  249 (896)
Q Consensus       177 qnk~VQ~gAasALAkIIE~a~d~~~~yL~~L-----lPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~--lLp  249 (896)
                      .+..|...|+.+|.++....     ++++.|     ++.|..++.+.+..+|.-+|+++..++........++..  +++
T Consensus       131 ~d~~Va~~A~~~L~~l~~~~-----~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~  205 (503)
T PF10508_consen  131 PDLSVAKAAIKALKKLASHP-----EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLD  205 (503)
T ss_pred             CcHHHHHHHHHHHHHHhCCc-----hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHH
Confidence            99999999999999999642     233334     888999998867777777899888887655322334443  888


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHHHH
Q 002658          250 SIHECLGSTDWATRKAAADALSALAL  275 (896)
Q Consensus       250 ~L~e~LsddDW~lRKaA~EaLgsLA~  275 (896)
                      .++..|.++|--+|..|+|+|+.||.
T Consensus       206 ~ll~eL~~dDiLvqlnalell~~La~  231 (503)
T PF10508_consen  206 LLLKELDSDDILVQLNALELLSELAE  231 (503)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PTZ00429 beta-adaptin; Provisional

Probab=98.40  E-value=0.00011  Score=90.04  Aligned_cols=240  Identities=16%  Similarity=0.161  Sum_probs=148.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHH
Q 002658           57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM  136 (896)
Q Consensus        57 T~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~V  136 (896)
                      .+|+..--|..++.. .|+..-..++.|.....++++.+|--|++.|+.+      .+...++.++..|.+.|.|++|.|
T Consensus        84 lKKLvYLYL~~ya~~-~pelalLaINtl~KDl~d~Np~IRaLALRtLs~I------r~~~i~e~l~~~lkk~L~D~~pYV  156 (746)
T PTZ00429         84 LKKLVYLYVLSTARL-QPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI------RVSSVLEYTLEPLRRAVADPDPYV  156 (746)
T ss_pred             HHHHHHHHHHHHccc-ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHHhcCCCHHH
Confidence            444444444444331 2332323345555555566666666666655432      234456778999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhc
Q 002658          137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS  216 (896)
Q Consensus       137 R~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLk  216 (896)
                      |.+|+-++..+.....+-.      .-..+++.|.+.|.|+++.|+..|+.+|..+++..++. .......+.+|+..|.
T Consensus       157 RKtAalai~Kly~~~pelv------~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~  229 (746)
T PTZ00429        157 RKTAAMGLGKLFHDDMQLF------YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLP  229 (746)
T ss_pred             HHHHHHHHHHHHhhCcccc------cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhh
Confidence            9999999999866441110      01236677888889999999999999999999865543 2445566777777776


Q ss_pred             CCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhh
Q 002658          217 NQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEAC  295 (896)
Q Consensus       217 s~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~~~~I~~LE~~  295 (896)
                      .-+.-.+..+|+++....   .....-...+|..+..+|.+.+..+--.|+.++..+..... +.+......+...+-..
T Consensus       230 e~~EW~Qi~IL~lL~~y~---P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L  306 (746)
T PTZ00429        230 ECNEWGQLYILELLAAQR---PSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL  306 (746)
T ss_pred             cCChHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh
Confidence            545545556677664421   11223356788888888888888898888888888775543 32222222222222222


Q ss_pred             hcCCChhhHHHHHHHHHHH
Q 002658          296 RFDKIKPVRDSMNEALQLW  314 (896)
Q Consensus       296 RfDKvKpVRDaA~eALe~W  314 (896)
                       ..+...+|=++++.+...
T Consensus       307 -~ss~~eiqyvaLr~I~~i  324 (746)
T PTZ00429        307 -SRRDAETQYIVCKNIHAL  324 (746)
T ss_pred             -hCCCccHHHHHHHHHHHH
Confidence             223444555555555433

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=6.3e-05  Score=93.22  Aligned_cols=250  Identities=13%  Similarity=0.153  Sum_probs=194.5

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhc-----CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHH
Q 002658           45 ILTSLSKLADRDTHQIAIEDLEKTIQT-----LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT  119 (896)
Q Consensus        45 ll~~L~KLsDRDT~k~Aa~eLD~La~~-----L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~Lp  119 (896)
                      +..-+.+-++.-+|+-+.+-|+.+...     +....+.-+.+.|.+.+++.....|+..+.+|..+.+.|+......++
T Consensus       658 v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~  737 (1176)
T KOG1248|consen  658 VDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP  737 (1176)
T ss_pred             hhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            333344445677999999999999876     222236667778888888889999999999999999999977777889


Q ss_pred             HHHHHHHHhhcCCChHHHHHHHHHHHHHH--HHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc-
Q 002658          120 KIISHIVKRLKDSDSGMKEACRDSIGSLS--KLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA-  196 (896)
Q Consensus       120 kIL~~IlrrLkDpDs~VR~Ac~~aLG~LA--~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a-  196 (896)
                      +.|+-++=.+++-+-.-|+.+-.+|-.|.  ...++.+.+.....+..|+..|.+.+......+-.....|+..++..- 
T Consensus       738 k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~  817 (1176)
T KOG1248|consen  738 KLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK  817 (1176)
T ss_pred             HHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence            99998888889998877777777665555  333344433335688899999999886555555555477888888664 


Q ss_pred             CCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002658          197 SDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALA  274 (896)
Q Consensus       197 ~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg--a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA  274 (896)
                      .....+++++|+..++-.|.+.+.++..+++..|..++..-  ....+|++.+||.++..+.+..-.+|+.+--.|-.|.
T Consensus       818 ~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi  897 (1176)
T KOG1248|consen  818 NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI  897 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            44556899999999999999999998888898888887532  4578999999999999888888899999999999999


Q ss_pred             Hhcc-hHHHhhHHHH-HHHHHh
Q 002658          275 LHSS-NLVIDGATST-LTVLEA  294 (896)
Q Consensus       275 ~avG-e~L~Py~~~~-I~~LE~  294 (896)
                      .-.| +.+.+|++.. .+.|.+
T Consensus       898 rkfg~~eLe~~~pee~~klL~n  919 (1176)
T KOG1248|consen  898 RKFGAEELESFLPEEDMKLLTN  919 (1176)
T ss_pred             HHhCHHHHHhhCHHHHHHHHHH
Confidence            9999 8888887644 334443

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=98.39  E-value=1.3e-05  Score=98.14  Aligned_cols=200  Identities=16%  Similarity=0.164  Sum_probs=169.3

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002658           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK  155 (896)
Q Consensus        77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~-d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~  155 (896)
                      ++.+-..+...+.+.+|..|++|+..|..+.+-.. +....|..-+...+-.+++|.+..|-..+...|..|+..+ ...
T Consensus       251 ~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~l-r~~  329 (815)
T KOG1820|consen  251 LSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKL-RPL  329 (815)
T ss_pred             hhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhc-chh
Confidence            66666677777889999999999999999998777 5677888888889999999999999999999999999988 322


Q ss_pred             ccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 002658          156 EENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ  235 (896)
Q Consensus       156 ~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~  235 (896)
                      +   ..+...+++.||+.+.+....+-.++..|+.++++.      -.|..+.+-++.++++.+.++|.-+...++....
T Consensus       330 ~---~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~  400 (815)
T KOG1820|consen  330 F---RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLR  400 (815)
T ss_pred             h---HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence            2   356677889999999999999999999999999983      2367899999999999999999998888887754


Q ss_pred             -ccc--cCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHH
Q 002658          236 -VGA--IAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGAT  286 (896)
Q Consensus       236 -vga--~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~~  286 (896)
                       .+.  .+..-+..++|.+.....|.+.++|++|.++++.|...+| +.|.-|+.
T Consensus       401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~  455 (815)
T KOG1820|consen  401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLK  455 (815)
T ss_pred             hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence             342  3567788899999999999999999999999999999999 44444433

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.30  E-value=4.6e-06  Score=77.70  Aligned_cols=84  Identities=17%  Similarity=0.198  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHH-hccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChh
Q 002658          224 ASLLPVVGSLS-QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKP  302 (896)
Q Consensus       224 ~alL~aIgSLA-~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKp  302 (896)
                      ...|-++.+++ +.+.....|++.+||+++.++.|+||.+|-.|||+|+.|+...++.+.+|+..+..+|-..-.|.++.
T Consensus         4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~   83 (97)
T PF12755_consen    4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN   83 (97)
T ss_pred             hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence            34455555553 45556889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHH
Q 002658          303 VRDSM  307 (896)
Q Consensus       303 VRDaA  307 (896)
                      ||..|
T Consensus        84 Vr~~a   88 (97)
T PF12755_consen   84 VRSAA   88 (97)
T ss_pred             HHHHH
Confidence            99875

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=9.7e-05  Score=85.01  Aligned_cols=259  Identities=17%  Similarity=0.217  Sum_probs=193.1

Q ss_pred             HcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccch---hhHHHHHHHHH
Q 002658           50 SKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS---THVTKIISHIV  126 (896)
Q Consensus        50 ~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~---P~LpkIL~~Il  126 (896)
                      ..++|.++++.++..|...+..-.+-.++-+|..+...+.+.+|..|-..+-   .+++.-+..+.   +-|..++-.+.
T Consensus       188 ~qls~~~~h~~g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~A---f~ael~~~~~l~~~~lL~s~~~~la  264 (533)
T KOG2032|consen  188 SQLSDNDIHRVGLTRLQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIA---FFAELKRPKELDKTGLLGSVLLSLA  264 (533)
T ss_pred             hhcccCcccHHHHHHHHHHHHhhCCccHHHHHhhcccccchhcccchHHHHH---HHHHHhCcccccccccHHHHHHHHH
Confidence            3457889999999999988876655468888888888888888877765544   45555555533   56888888999


Q ss_pred             HhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhc-CCCCchhH
Q 002658          127 KRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECA-SDPPVVAF  204 (896)
Q Consensus       127 rrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a-~d~~~~yL  204 (896)
                      .+..||+..+|.-|+..||..++.+.+.    ...+.+.++..++..| +..|+.||--|..||..+.|-. .+...+|+
T Consensus       265 ~ka~dp~a~~r~~a~r~L~~~as~~P~k----v~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~  340 (533)
T KOG2032|consen  265 NKATDPSAKSRGMACRGLGNTASGAPDK----VRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYL  340 (533)
T ss_pred             HhccCchhHHHHHHHHHHHHHhccCcHH----HHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhc
Confidence            9999999999999999999999886332    3466788888888888 4568999999999999999986 55667899


Q ss_pred             HHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc---c-cCc------------------c-------------------
Q 002658          205 QKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG---A-IAP------------------Q-------------------  242 (896)
Q Consensus       205 ~~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vg---a-~~~------------------p-------------------  242 (896)
                      -.+.-|+..++++-..++|.+++.+.|.++. .|   . .|.                  |                   
T Consensus       341 l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~r  420 (533)
T KOG2032|consen  341 LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVR  420 (533)
T ss_pred             hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHH
Confidence            9999999999999999999988888888863 22   1 111                  1                   


Q ss_pred             -----cHH----HHHHHH---------------HH---h-h------CCCCH-HHHHHHHHHHHHHHHhcchHHHhhH--
Q 002658          243 -----SLE----PLLQSI---------------HE---C-L------GSTDW-ATRKAAADALSALALHSSNLVIDGA--  285 (896)
Q Consensus       243 -----yle----~lLp~L---------------~e---~-L------sddDW-~lRKaA~EaLgsLA~avGe~L~Py~--  285 (896)
                           |+.    ..++..               .+   + +      -+..| .+|-+|.-.-..+...+-+..-++.  
T Consensus       421 ke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~  500 (533)
T KOG2032|consen  421 KELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADG  500 (533)
T ss_pred             HHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhH
Confidence                 111    111100               00   0 1      11357 6777777777777776666666665  


Q ss_pred             HHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 002658          286 TSTLTVLEACRFDKIKPVRDSMNEALQLWK  315 (896)
Q Consensus       286 ~~~I~~LE~~RfDKvKpVRDaA~eALe~WK  315 (896)
                      ..+...+...++|.-..|++.+.+|++...
T Consensus       501 ~qL~~~ls~l~~dp~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  501 LQLRSSLSTLWRDPRPEVTDSARKALDLLS  530 (533)
T ss_pred             HHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence            445778999999999999999999998754

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=0.00013  Score=92.10  Aligned_cols=248  Identities=17%  Similarity=0.154  Sum_probs=168.0

Q ss_pred             hHhHHHHHHHHHHHHHcC-CChh-HHHHHHHHHHHHHhcCCCCC---HHHH----HHHHhhhcCCCChhhHHHHHHHHHH
Q 002658           35 HLAMVEMKQKILTSLSKL-ADRD-THQIAIEDLEKTIQTLSQES---LPML----LNCLYESSNDPKPAVKKESVRLLAL  105 (896)
Q Consensus        35 ~~~~~~Lk~rll~~L~KL-sDRD-T~k~Aa~eLD~La~~L~pd~---Lp~f----Ls~L~es~ss~k~~vRKeAIllLG~  105 (896)
                      .+.+.+.-.+++--|=++ -|.| ..+.|+   ..|=..|.+|.   +.-|    |.-|+..+.+..|.+|+++.++|.-
T Consensus       989 ~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM---~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~d 1065 (1702)
T KOG0915|consen  989 GEKLEPYLKKLIPRLYRYQYDPDKKVQDAM---TSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALAD 1065 (1702)
T ss_pred             HHhhhhHHHHhhHHHhhhccCCcHHHHHHH---HHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            334444444455555445 4554 333344   33444443431   4444    4445555688899999999999999


Q ss_pred             HHHHhc-ccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc----ccCCchhHhhhHHHHHHHH-hcCCH
Q 002658          106 VCELHS-ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK----EENNGTVVGLFVKPLFEAM-MEQNK  179 (896)
Q Consensus       106 IAeg~~-d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~----~e~~~~~~~~lL~pL~eaL-~Eqnk  179 (896)
                      +..|++ +.+..+||+|+-.+.|..-|-.-.||.|+-.+...|+..+++-+    ...+.+....+||-|++-= ...-+
T Consensus      1066 Ll~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~ 1145 (1702)
T KOG0915|consen 1066 LLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVN 1145 (1702)
T ss_pred             HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchH
Confidence            999999 55899999999999999999999999999888888777776632    1122344555555554421 34567


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhh-------------------------------------
Q 002658          180 GVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMA-------------------------------------  222 (896)
Q Consensus       180 ~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~ka-------------------------------------  222 (896)
                      .|-..+...+-.++..++..+.||+++|+|-|+.++.....++                                     
T Consensus      1146 evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci 1225 (1702)
T KOG0915|consen 1146 EVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCI 1225 (1702)
T ss_pred             HHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHH
Confidence            7778888888888888888888999999999988887542211                                     


Q ss_pred             ---------------------------HHHHHHHHHHHH-hccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002658          223 ---------------------------KASLLPVVGSLS-QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALA  274 (896)
Q Consensus       223 ---------------------------K~alL~aIgSLA-~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA  274 (896)
                                                 |..+-..|..++ ..|....||...+|..|+..+.|.+-.+||+-+-++|.|+
T Consensus      1226 ~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~ 1305 (1702)
T KOG0915|consen 1226 NYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLA 1305 (1702)
T ss_pred             HhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence                                       011111122221 1222345888888888888888988999999999999988


Q ss_pred             Hhcc-hHHHhhH
Q 002658          275 LHSS-NLVIDGA  285 (896)
Q Consensus       275 ~avG-e~L~Py~  285 (896)
                      .... +.+.-++
T Consensus      1306 k~Ss~dq~qKLi 1317 (1702)
T KOG0915|consen 1306 KFSSPDQMQKLI 1317 (1702)
T ss_pred             hcCChHHHHHHH
Confidence            8777 3444443

>PTZ00429 beta-adaptin; Provisional

Probab=98.20  E-value=0.00024  Score=87.05  Aligned_cols=251  Identities=14%  Similarity=0.135  Sum_probs=150.7

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCCh
Q 002658           55 RDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDS  134 (896)
Q Consensus        55 RDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs  134 (896)
                      .-.|..|+..|-.|.   .++.++.++..|.....+.+|.|||.|++++..+-..+++.+..  ..+++.+...|.|+++
T Consensus       119 p~IRaLALRtLs~Ir---~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~~~~~~L~~LL~D~dp  193 (746)
T PTZ00429        119 PVVRALAVRTMMCIR---VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--QDFKKDLVELLNDNNP  193 (746)
T ss_pred             HHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--cchHHHHHHHhcCCCc
Confidence            335666665554443   35567778888888888999999999999999998887776431  1234455566899999


Q ss_pred             HHHHHHHHHHHHHHHHH--------------hc---c----------------cccCCchhHhhhHHHHHHHHhcCCHhH
Q 002658          135 GMKEACRDSIGSLSKLY--------------LN---G----------------KEENNGTVVGLFVKPLFEAMMEQNKGV  181 (896)
Q Consensus       135 ~VR~Ac~~aLG~LA~~l--------------i~---~----------------~~e~~~~~~~~lL~pL~eaL~Eqnk~V  181 (896)
                      +|...|..++-.+....              +.   .                .++ .......++..+...|...|+.|
T Consensus       194 ~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~-~~~e~~~il~~l~~~Lq~~N~AV  272 (746)
T PTZ00429        194 VVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPS-DKESAETLLTRVLPRMSHQNPAV  272 (746)
T ss_pred             cHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHhcCCCHHH
Confidence            99888877766664321              00   0                000 01112334455555555678888


Q ss_pred             HHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcc-----------------
Q 002658          182 QSGAAMCMAKMVECAS-DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQ-----------------  242 (896)
Q Consensus       182 Q~gAasALAkIIE~a~-d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~~p-----------------  242 (896)
                      .-+|+.++-.+..... +....++.+|.+-|+.++. ...-+|-.+|..|..++... ..|.+                 
T Consensus       273 Vl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s-s~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~  351 (746)
T PTZ00429        273 VMGAIKVVANLASRCSQELIERCTVRVNTALLTLSR-RDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKL  351 (746)
T ss_pred             HHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC-CCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHH
Confidence            8777777776654321 1111233334444455543 33456666666666554322 22222                 


Q ss_pred             -------------cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHH
Q 002658          243 -------------SLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNE  309 (896)
Q Consensus       243 -------------yle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~e  309 (896)
                                   .++.++.-|.+++++.|-+.++.++.+|+.+|...+..    ...|++.|...-.++..    ++.+
T Consensus       352 ~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~----a~~cV~~Ll~ll~~~~~----~v~e  423 (746)
T PTZ00429        352 EKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV----APDCANLLLQIVDRRPE----LLPQ  423 (746)
T ss_pred             HHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCch----hHHH
Confidence                         23445556777888889999999999999999877654    45555554433334443    2334


Q ss_pred             HHHHHHHhccC
Q 002658          310 ALQLWKKIAGK  320 (896)
Q Consensus       310 ALe~WK~la~~  320 (896)
                      ++...+.|-..
T Consensus       424 ~i~vik~Ilrk  434 (746)
T PTZ00429        424 VVTAAKDIVRK  434 (746)
T ss_pred             HHHHHHHHHHH
Confidence            55555555433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.15  E-value=6e-05  Score=93.23  Aligned_cols=229  Identities=18%  Similarity=0.220  Sum_probs=159.0

Q ss_pred             hhhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc
Q 002658           33 SSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS  111 (896)
Q Consensus        33 s~~~~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~-Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~  111 (896)
                      -.+.-++-+.--|..|+.-+.-+++..-|++.|..++..++.+. |..+|+++.--..++...||-.|+..|..+...-.
T Consensus       415 ~~~~ga~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr  494 (1431)
T KOG1240|consen  415 PKEEGAVLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR  494 (1431)
T ss_pred             ccccceeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc
Confidence            34455666677788899999888899999999999999886654 77778887766778889999999988776655433


Q ss_pred             cc----chhhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHH--HhcCCH-hHH-
Q 002658          112 EL----TSTHVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEA--MMEQNK-GVQ-  182 (896)
Q Consensus       112 d~----I~P~LpkIL~~IlrrLkD-pDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~ea--L~Eqnk-~VQ-  182 (896)
                      +.    ..=|-+||+|.|...+.| ....||-|-+..|+.||.-..+         +-++-..+-.+  +.+.|- ..+ 
T Consensus       495 ~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r---------Fle~~q~~~~~g~~n~~nset~~~  565 (1431)
T KOG1240|consen  495 DIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR---------FLELTQELRQAGMLNDPNSETAPE  565 (1431)
T ss_pred             CCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH---------HHHHHHHHHhcccccCcccccccc
Confidence            22    233678889999999999 6779999999999999987732         22222222222  122211 111 


Q ss_pred             ---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hccccCcccHHHHHHHHHHhhCCC
Q 002658          183 ---SGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS-QVGAIAPQSLEPLLQSIHECLGST  258 (896)
Q Consensus       183 ---~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA-~vga~~~pyle~lLp~L~e~Lsdd  258 (896)
                         .+-..+|-..||              ..+..+|..+...+|.++|..|+-+- -.|.  ...=+.+|+.|.-+|.|.
T Consensus       566 ~~~~~~~~~L~~~V~--------------~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk--~ksND~iLshLiTfLNDk  629 (1431)
T KOG1240|consen  566 QNYNTELQALHHTVE--------------QMVSSLLSDSPPIVKRALLESIIPLCVFFGK--EKSNDVILSHLITFLNDK  629 (1431)
T ss_pred             cccchHHHHHHHHHH--------------HHHHHHHcCCchHHHHHHHHHHHHHHHHhhh--cccccchHHHHHHHhcCc
Confidence               111222222222              33455667777789999999988773 2341  112246889999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcch-----HHHhhHH
Q 002658          259 DWATRKAAADALSALALHSSN-----LVIDGAT  286 (896)
Q Consensus       259 DW~lRKaA~EaLgsLA~avGe-----~L~Py~~  286 (896)
                      ||.+|.+=.|.|..|+..+|.     .+.|++.
T Consensus       630 Dw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~  662 (1431)
T KOG1240|consen  630 DWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQ  662 (1431)
T ss_pred             cHHHHHHHHhhccceEEEEeeeeHHHHHHHHHH
Confidence            999999999999999999983     4555543

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.12  E-value=0.00026  Score=84.29  Aligned_cols=206  Identities=13%  Similarity=0.215  Sum_probs=155.1

Q ss_pred             CChhHHHHHHHHHHHHHhcCC------C--CCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccch-hhHHHHHH
Q 002658           53 ADRDTHQIAIEDLEKTIQTLS------Q--ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS-THVTKIIS  123 (896)
Q Consensus        53 sDRDT~k~Aa~eLD~La~~L~------p--d~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~-P~LpkIL~  123 (896)
                      .+.++.-..+.+|..|.+.++      |  +.||.+++.|.    +..-.+-..||.++|.||...++++. --+=+|.=
T Consensus       853 eypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILk----nrheKVqen~IdLvg~IadrgpE~v~aREWMRIcf  928 (1172)
T KOG0213|consen  853 EYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILK----NRHEKVQENCIDLVGTIADRGPEYVSAREWMRICF  928 (1172)
T ss_pred             ccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhh----hhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHH
Confidence            367788888899999887652      3  12444444444    33345667899999999999999864 35667777


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchh
Q 002658          124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVA  203 (896)
Q Consensus       124 ~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~y  203 (896)
                      -++..|+-..-.+|.++.+++|-|+..+   ++       ..+|..|++.|.-+...-..+...|++-+-|.+..-    
T Consensus       929 eLlelLkahkK~iRRaa~nTfG~IakaI---GP-------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----  994 (1172)
T KOG0213|consen  929 ELLELLKAHKKEIRRAAVNTFGYIAKAI---GP-------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----  994 (1172)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHhc---CH-------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----
Confidence            8999999999999999999999999998   43       357777777775443333334445555555654321    


Q ss_pred             HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002658          204 FQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS  278 (896)
Q Consensus       204 L~~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG  278 (896)
                        .++|-|..=-..|..-+++.+|.++.-++. .|.....|+-.+.|.|.+.|+|.|.--|..|+.++..|+..+.
T Consensus       995 --tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen  995 --TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred             --hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC
Confidence              266777766777888888999999988875 6777788999999999999999999999999999999887654

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=98.09  E-value=0.00017  Score=82.65  Aligned_cols=202  Identities=14%  Similarity=0.134  Sum_probs=143.2

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHH-HHHHHHHHhcccchhhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcc
Q 002658           77 LPMLLNCLYESSNDPKPAVKKESVR-LLALVCELHSELTSTHVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNG  154 (896)
Q Consensus        77 Lp~fLs~L~es~ss~k~~vRKeAIl-lLG~IAeg~~d~I~P~LpkIL~~IlrrLkD-pDs~VR~Ac~~aLG~LA~~li~~  154 (896)
                      .......|.+...+.+...|++|+. +.+.++++--.-=..|..+|+-.++..|.| .+..++.-|...|+-+...=..-
T Consensus       285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~  364 (516)
T KOG2956|consen  285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR  364 (516)
T ss_pred             hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence            4444444444455668889999998 888888865444578999999999999999 67788888888877766554221


Q ss_pred             cccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 002658          155 KEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS  234 (896)
Q Consensus       155 ~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA  234 (896)
                      -+    +.....+.-++++-.+..+.|-..|..|..+++-.  ..+...+-.++|.++.    ..++.-.++|.++--++
T Consensus       365 l~----DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las--~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~  434 (516)
T KOG2956|consen  365 LF----DSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS--HLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLF  434 (516)
T ss_pred             hh----chHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh--hCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHH
Confidence            11    22333444555555556666666666665555542  2233455566676664    45665557777777766


Q ss_pred             h-cc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHH
Q 002658          235 Q-VG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATST  288 (896)
Q Consensus       235 ~-vg-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~~~~  288 (896)
                      . +- +...+.++.++|++++...+..-.+||.|+=||++|...+| +.+.||+.++
T Consensus       435 e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L  491 (516)
T KOG2956|consen  435 ERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL  491 (516)
T ss_pred             hhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence            3 33 45678899999999999999999999999999999999999 9999998766

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.05  E-value=0.0017  Score=80.99  Aligned_cols=243  Identities=17%  Similarity=0.180  Sum_probs=177.1

Q ss_pred             HHHHHHHHHH---hcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH--hcccchhhHHHHHHHHHHhhcCCCh
Q 002658           60 IAIEDLEKTI---QTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCEL--HSELTSTHVTKIISHIVKRLKDSDS  134 (896)
Q Consensus        60 ~Aa~eLD~La---~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg--~~d~I~P~LpkIL~~IlrrLkDpDs  134 (896)
                      ..+..||.++   ...+.+.+..++.......++..+.+++-+..+|+.++.+  +..+...++..|...+...+++...
T Consensus       632 ~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~  711 (1176)
T KOG1248|consen  632 KTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSS  711 (1176)
T ss_pred             HHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccch
Confidence            3344455444   3344555777774554545666788999999999999998  4445788999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHH--Hhc----CCCCchhHHHHH
Q 002658          135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV--ECA----SDPPVVAFQKLC  208 (896)
Q Consensus       135 ~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkII--E~a----~d~~~~yL~~Ll  208 (896)
                      .+|...+.++-.|...+-.+    +-..++..++-++=.+.+.|...-..|+.||.-++  ...    .++....|+..+
T Consensus       712 ~~~~~rl~~L~~L~~~~~~e----~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl  787 (1176)
T KOG1248|consen  712 PAQASRLKCLKRLLKLLSAE----HCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFL  787 (1176)
T ss_pred             HHHHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHH
Confidence            99999999999998887211    11223333333333335667777778999998888  332    222244788888


Q ss_pred             HHHHHHhcCCchhhHHHHHHHHHHHHh-cc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhH
Q 002658          209 ARICKLLSNQNFMAKASLLPVVGSLSQ-VG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGA  285 (896)
Q Consensus       209 PRL~kLLks~s~kaK~alL~aIgSLA~-vg-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~  285 (896)
                      +.+...|-+.....++.-|-+|+.+.. .+ -...+++..++..+.-+|.....++|++|+..+..+....+ ..+.||.
T Consensus       788 ~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~  867 (1176)
T KOG1248|consen  788 SIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL  867 (1176)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH
Confidence            888888776666655554777777753 33 34578888999999999999999999999999999999999 8899999


Q ss_pred             HHHHHHHHhhhcCCChhhHHH
Q 002658          286 TSTLTVLEACRFDKIKPVRDS  306 (896)
Q Consensus       286 ~~~I~~LE~~RfDKvKpVRDa  306 (896)
                      +.++..+.....|+--.+|-.
T Consensus       868 ~~LL~sll~ls~d~k~~~r~K  888 (1176)
T KOG1248|consen  868 EELLPSLLALSHDHKIKVRKK  888 (1176)
T ss_pred             HHHHHHHHHHHHhhhHHHHHH
Confidence            999998877777744444443

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=98.04  E-value=0.00068  Score=75.25  Aligned_cols=202  Identities=14%  Similarity=0.142  Sum_probs=134.8

Q ss_pred             CCChhhHHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhH
Q 002658           90 DPKPAVKKESVRLLALVCELHS--ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFV  167 (896)
Q Consensus        90 s~k~~vRKeAIllLG~IAeg~~--d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL  167 (896)
                      +.+...|.+++..|-.+...+.  +.+..+...|+..+++.|+=..+.=+..++.+++-|+-.+-  ......+++..+.
T Consensus        54 eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg--~g~~~~ei~~~~~  131 (309)
T PF05004_consen   54 EKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLG--AGEDSEEIFEELK  131 (309)
T ss_pred             hcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcC--CCccHHHHHHHHH
Confidence            4457889999999888877655  66888899999999999998887667777888888887761  1233457788888


Q ss_pred             HHHHHHHhcCCH--hHHHHHHHHHHHHHHhcCCCCchhH--HHHHHHHH--HHhcCC----------chhhHHHHHHHHH
Q 002658          168 KPLFEAMMEQNK--GVQSGAAMCMAKMVECASDPPVVAF--QKLCARIC--KLLSNQ----------NFMAKASLLPVVG  231 (896)
Q Consensus       168 ~pL~eaL~Eqnk--~VQ~gAasALAkIIE~a~d~~~~yL--~~LlPRL~--kLLks~----------s~kaK~alL~aIg  231 (896)
                      ++|...+.+...  .+..+++.||+-++=-.......+.  -..|.-++  -+++..          ...+..++|.+-+
T Consensus       132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~  211 (309)
T PF05004_consen  132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWA  211 (309)
T ss_pred             HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHH
Confidence            888888865543  4434455566665543222222222  13334222  222221          2345667777777


Q ss_pred             HHHh-cc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcch----HHHhhHHHHHHHHH
Q 002658          232 SLSQ-VG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSN----LVIDGATSTLTVLE  293 (896)
Q Consensus       232 SLA~-vg-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe----~L~Py~~~~I~~LE  293 (896)
                      -++. +. ..+..+++..+|.|.++|.++|-.+|.+|-++|+.|.....+    ...+....+++.|.
T Consensus       212 lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~  279 (309)
T PF05004_consen  212 LLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLR  279 (309)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHH
Confidence            6653 22 224467788999999999999999999999999988776662    23344555555554

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=97.99  E-value=1.4e-05  Score=72.85  Aligned_cols=111  Identities=18%  Similarity=0.184  Sum_probs=86.1

Q ss_pred             CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002658           76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT-KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG  154 (896)
Q Consensus        76 ~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~Lp-kIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~  154 (896)
                      .++.++.++.    +.++.+|+.++.+|++++....+.....+. .+++.+++.|.|+++.|+..|+++++.|+......
T Consensus         8 ~i~~l~~~l~----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~   83 (120)
T cd00020           8 GLPALVSLLS----SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN   83 (120)
T ss_pred             ChHHHHHHHH----cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH
Confidence            3566666665    445899999999999999875555444455 88999999999999999999999999998654110


Q ss_pred             cccCCchhH-hhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002658          155 KEENNGTVV-GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE  194 (896)
Q Consensus       155 ~~e~~~~~~-~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE  194 (896)
                          ....+ ..+++.|++.|.+.+..++..|+.+|..+++
T Consensus        84 ----~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          84 ----KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             ----HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence                01112 2378899999988899999999999998875

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.93  E-value=0.00038  Score=70.87  Aligned_cols=93  Identities=16%  Similarity=0.268  Sum_probs=76.4

Q ss_pred             ChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHH
Q 002658           92 KPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLF  171 (896)
Q Consensus        92 k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~  171 (896)
                      +|.+|..++.++|-++-.|+..+.||+    +.+..+|+|+++.||..|.-++..|...-.       -..-..++..++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~----~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-------ik~k~~l~~~~l   69 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVEPYL----PNLYKCLRDEDPLVRKTALLVLSHLILEDM-------IKVKGQLFSRIL   69 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHHhHH----HHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-------eeehhhhhHHHH
Confidence            478999999999999999988888776    556689999999999999999888765421       122445667777


Q ss_pred             HHHhcCCHhHHHHHHHHHHHHHHh
Q 002658          172 EAMMEQNKGVQSGAAMCMAKMVEC  195 (896)
Q Consensus       172 eaL~Eqnk~VQ~gAasALAkIIE~  195 (896)
                      .+|.|.++.|+..|..+|..+...
T Consensus        70 ~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   70 KLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHh
Confidence            888999999999999999999886

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=97.92  E-value=3e-05  Score=70.76  Aligned_cols=109  Identities=18%  Similarity=0.132  Sum_probs=87.9

Q ss_pred             hHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhccc-cCccc
Q 002658          166 FVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVGA-IAPQS  243 (896)
Q Consensus       166 lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~-~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga-~~~py  243 (896)
                      +++.|++.|.+.++.+...|+.||..++...+.....++. .++|.|+++|++++.+++..++.+++.++.... ....+
T Consensus         8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   87 (120)
T cd00020           8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV   87 (120)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence            7888999998889999999999999999865333334555 689999999999999999999999999875331 11111


Q ss_pred             H-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002658          244 L-EPLLQSIHECLGSTDWATRKAAADALSALA  274 (896)
Q Consensus       244 l-e~lLp~L~e~LsddDW~lRKaA~EaLgsLA  274 (896)
                      . ..+++.|.+++.+.+..+|+.|+.+|..|+
T Consensus        88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            2 237889999999999999999999999876

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.88  E-value=0.00017  Score=79.30  Aligned_cols=174  Identities=17%  Similarity=0.165  Sum_probs=131.9

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc
Q 002658           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE  156 (896)
Q Consensus        77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~  156 (896)
                      -..-|...+..+.+.+|...=.++..+-.+++.|.+.+.+.|.+++-+|++.++.+.+.|-.++|-|++.|+..+-.   
T Consensus        86 p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~---  162 (334)
T KOG2933|consen   86 PEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN---  162 (334)
T ss_pred             HHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---
Confidence            44556666667788999999999999999999999999999999999999999999999999999999999999932   


Q ss_pred             cCCchhHhhhHHHHHHHH----hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHH-HH
Q 002658          157 ENNGTVVGLFVKPLFEAM----MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPV-VG  231 (896)
Q Consensus       157 e~~~~~~~~lL~pL~eaL----~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~a-Ig  231 (896)
                           ....-+..|+..|    .+.|..|-+.|--||-+++.....      .++++.|+.+++|.+..++...--| .+
T Consensus       163 -----~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~  231 (334)
T KOG2933|consen  163 -----SIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSR  231 (334)
T ss_pred             -----HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccc
Confidence                 2344666666666    355788999999999999986532      2477778888887666655432223 23


Q ss_pred             HHHhcc--ccCcccHHHHHHHHHHhhCCCCHHHHH
Q 002658          232 SLSQVG--AIAPQSLEPLLQSIHECLGSTDWATRK  264 (896)
Q Consensus       232 SLA~vg--a~~~pyle~lLp~L~e~LsddDW~lRK  264 (896)
                      .+...|  ....+|...+++.+.+-+.+.=..+|+
T Consensus       232 ~v~rl~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~  266 (334)
T KOG2933|consen  232 CVIRLGVLPVLLQGSCDLSRAAQEQGSDKLPELRE  266 (334)
T ss_pred             cceeccccchhhHhHHHHHHHHHhhhccccccccc
Confidence            333333  445677778888888877775544443

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.84  E-value=0.00012  Score=64.49  Aligned_cols=78  Identities=24%  Similarity=0.409  Sum_probs=63.7

Q ss_pred             CCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHH
Q 002658           89 NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK  168 (896)
Q Consensus        89 ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~  168 (896)
                      +++++.+|..++.+||.+.          -++.++.++..|+|+++.||.++++++|.+.              -+..++
T Consensus        10 ~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------------~~~~~~   65 (88)
T PF13646_consen   10 NDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG--------------DPEAIP   65 (88)
T ss_dssp             TSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------------HHHTHH
T ss_pred             cCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------------CHHHHH
Confidence            5788999999999999331          2477899999999999999999999999763              244778


Q ss_pred             HHHHHHhc-CCHhHHHHHHHHHH
Q 002658          169 PLFEAMME-QNKGVQSGAAMCMA  190 (896)
Q Consensus       169 pL~eaL~E-qnk~VQ~gAasALA  190 (896)
                      .|.+.|.+ .+..|+..|+.+|+
T Consensus        66 ~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   66 ALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcHHHHHHHHhhcC
Confidence            88888854 57788999999885

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.83  E-value=0.0011  Score=77.84  Aligned_cols=273  Identities=14%  Similarity=0.147  Sum_probs=155.8

Q ss_pred             HHHHHHcC--CChhHHHHHHHHHHHHHhcCC---CCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-ccchhh
Q 002658           45 ILTSLSKL--ADRDTHQIAIEDLEKTIQTLS---QES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTSTH  117 (896)
Q Consensus        45 ll~~L~KL--sDRDT~k~Aa~eLD~La~~L~---pd~-Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~-d~I~P~  117 (896)
                      |-++|..|  .-.+.+..|+...-.++..|.   ... +.-+=..|++++....|.+=-..+.++..|...|. +.+.|-
T Consensus       606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpP  685 (975)
T COG5181         606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPP  685 (975)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCc
Confidence            33445444  346677777776666554442   112 32323334566655555554444444444444454 346666


Q ss_pred             HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC
Q 002658          118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS  197 (896)
Q Consensus       118 LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~  197 (896)
                      +..|+|.|..-|+.....|..-+...+|.++.....-   -+...|--++=-|++.|...||...-.|-..+.-|-+..+
T Consensus       686 i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pey---i~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG  762 (975)
T COG5181         686 ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEY---IGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG  762 (975)
T ss_pred             hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCccc---CCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC
Confidence            6666666666666666666555555555555444110   0113344455555555555555554433322222222110


Q ss_pred             CCC---------------------------chh--HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-ccccCcccHHHH
Q 002658          198 DPP---------------------------VVA--FQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAPQSLEPL  247 (896)
Q Consensus       198 d~~---------------------------~~y--L~~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vga~~~pyle~l  247 (896)
                      .++                           .+|  .=.++|-|..=...|..-+++.+|.++.-++. .|.....|+-.+
T Consensus       763 PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~i  842 (975)
T COG5181         763 PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSI  842 (975)
T ss_pred             HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            000                           001  11256666666667777778888888877764 666777899999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhccC
Q 002658          248 LQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (896)
Q Consensus       248 Lp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~~  320 (896)
                      .|-|.+.|+|.|.--|..|+..+..|+...+ ---...+--++++|-..-++..++|-.+..|-++.+...-|+
T Consensus       843 tPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~  916 (975)
T COG5181         843 TPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS  916 (975)
T ss_pred             hHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999998887644 111112233455555666677777777766666666655533

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.80  E-value=0.002  Score=70.78  Aligned_cols=154  Identities=23%  Similarity=0.290  Sum_probs=92.5

Q ss_pred             HHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCc
Q 002658           81 LNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNG  160 (896)
Q Consensus        81 Ls~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~  160 (896)
                      ...+.....+.++.+|..+...++.+..          ...++.+...|.|.++.||..+..++|.+-            
T Consensus        45 ~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~------------  102 (335)
T COG1413          45 ADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELG------------  102 (335)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC------------
Confidence            3334444445578888888877655543          456777888888888888888888666332            


Q ss_pred             hhHhhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCch------------hhHHHHH
Q 002658          161 TVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNF------------MAKASLL  227 (896)
Q Consensus       161 ~~~~~lL~pL~eaL~-Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~------------kaK~alL  227 (896)
                        .+..+++|.+.|. +.+..|...|+.+|.++-+..          -+..++.++++...            .+|.+++
T Consensus       103 --~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~  170 (335)
T COG1413         103 --DPEAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAA  170 (335)
T ss_pred             --ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence              3446777777776 688888888888888776531          13334444444331            1222222


Q ss_pred             HHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002658          228 PVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS  277 (896)
Q Consensus       228 ~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~av  277 (896)
                      .+++.+         .-+..++.|.+.+.+.+..+|.+|+.+|+.+....
T Consensus       171 ~~l~~~---------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~  211 (335)
T COG1413         171 EALGEL---------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN  211 (335)
T ss_pred             HHHHHc---------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence            222211         12244555666666666667777777666655543

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.79  E-value=0.0046  Score=76.21  Aligned_cols=181  Identities=11%  Similarity=0.181  Sum_probs=130.3

Q ss_pred             HHHHHhcCCCCCHHHHHHHHhhhcC--------CCChhhHHHHHHHHHHHHHHhccc--chhhHHHH-HHHHHHhhcCCC
Q 002658           65 LEKTIQTLSQESLPMLLNCLYESSN--------DPKPAVKKESVRLLALVCELHSEL--TSTHVTKI-ISHIVKRLKDSD  133 (896)
Q Consensus        65 LD~La~~L~pd~Lp~fLs~L~es~s--------s~k~~vRKeAIllLG~IAeg~~d~--I~P~LpkI-L~~IlrrLkDpD  133 (896)
                      |-.++..=..+.|+.+|+++.+-+.        ..++..+.-|++++|.+++.-.+.  ....+++| +++|.+.+++|-
T Consensus       396 l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~  475 (1010)
T KOG1991|consen  396 LTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY  475 (1010)
T ss_pred             HHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch
Confidence            4444443356668888888876543        334556666999999999877644  34566665 468999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCC---CchhHHHHHH
Q 002658          134 SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDP---PVVAFQKLCA  209 (896)
Q Consensus       134 s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~-Eqnk~VQ~gAasALAkIIE~a~d~---~~~yL~~LlP  209 (896)
                      -.+|.-+||+++++++.=++.     ...+...+.....+|. ++.-.|+.-|+.||..++++....   +.+.++.+|.
T Consensus       476 g~Lrarac~vl~~~~~~df~d-----~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq  550 (1010)
T KOG1991|consen  476 GYLRARACWVLSQFSSIDFKD-----PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQ  550 (1010)
T ss_pred             hHHHHHHHHHHHHHHhccCCC-----hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHH
Confidence            999999999999999543332     2457788888888886 777789999999999999986533   5678999999


Q ss_pred             HHHHHhcCCchhhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHH
Q 002658          210 RICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHE  253 (896)
Q Consensus       210 RL~kLLks~s~kaK~alL~aIgSLA~-vga~~~pyle~lLp~L~e  253 (896)
                      .|+++.+.-...   .+-.++-.++. .+....||...+++.|.+
T Consensus       551 ~lL~L~ne~End---~Lt~vme~iV~~fseElsPfA~eL~q~La~  592 (1010)
T KOG1991|consen  551 ELLKLSNEVEND---DLTNVMEKIVCKFSEELSPFAVELCQNLAE  592 (1010)
T ss_pred             HHHHHHHhcchh---HHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Confidence            999998853222   23334444432 334566777777776655

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.77  E-value=0.0019  Score=71.09  Aligned_cols=182  Identities=20%  Similarity=0.318  Sum_probs=119.6

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhc-CCC
Q 002658           55 RDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLK-DSD  133 (896)
Q Consensus        55 RDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLk-DpD  133 (896)
                      ..++..|+..|-.+-.   .+.++.+...+    .+..+.+|..++.+||.+-.          +.-++.+++.|. |++
T Consensus        57 ~~vr~~aa~~l~~~~~---~~av~~l~~~l----~d~~~~vr~~a~~aLg~~~~----------~~a~~~li~~l~~d~~  119 (335)
T COG1413          57 LLVRLSAAVALGELGS---EEAVPLLRELL----SDEDPRVRDAAADALGELGD----------PEAVPPLVELLENDEN  119 (335)
T ss_pred             HHHHHHHHHHHhhhch---HHHHHHHHHHh----cCCCHHHHHHHHHHHHccCC----------hhHHHHHHHHHHcCCc
Confidence            4455555555333221   22244444444    46678999999997766542          334556666666 899


Q ss_pred             hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHh------------HHHHHHHHHHHHHHhcCCCCc
Q 002658          134 SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKG------------VQSGAAMCMAKMVECASDPPV  201 (896)
Q Consensus       134 s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~------------VQ~gAasALAkIIE~a~d~~~  201 (896)
                      ..||..|.++++.+-..-              .+.+|++.+.+....            ++.++..+|..+-+       
T Consensus       120 ~~vR~~aa~aL~~~~~~~--------------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~-------  178 (335)
T COG1413         120 EGVRAAAARALGKLGDER--------------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD-------  178 (335)
T ss_pred             HhHHHHHHHHHHhcCchh--------------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC-------
Confidence            999999999999653322              477888888765532            33444444433322       


Q ss_pred             hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hH
Q 002658          202 VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NL  280 (896)
Q Consensus       202 ~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~  280 (896)
                         +..++-+..++.+...-+|..+..+++.+..-.       ..+.+.+...+.+++|.+|+.++.+|+.+...-. ..
T Consensus       179 ---~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~~~~  248 (335)
T COG1413         179 ---PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------VEAADLLVKALSDESLEVRKAALLALGEIGDEEAVDA  248 (335)
T ss_pred             ---hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchhHHH
Confidence               235666777777777778888788877764311       5677888899999999999999999998766555 44


Q ss_pred             HHhh
Q 002658          281 VIDG  284 (896)
Q Consensus       281 L~Py  284 (896)
                      +..+
T Consensus       249 l~~~  252 (335)
T COG1413         249 LAKA  252 (335)
T ss_pred             HHHH
Confidence            4444

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=97.77  E-value=8.8e-05  Score=82.18  Aligned_cols=214  Identities=14%  Similarity=0.191  Sum_probs=147.9

Q ss_pred             CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHH---HHhcccchh--hHHHHHHHHHHhhcCCC---hHHHHHHHHHHHHH
Q 002658           76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVC---ELHSELTST--HVTKIISHIVKRLKDSD---SGMKEACRDSIGSL  147 (896)
Q Consensus        76 ~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IA---eg~~d~I~P--~LpkIL~~IlrrLkDpD---s~VR~Ac~~aLG~L  147 (896)
                      .+|.|+..|.    +.+-.+|+.++-+||++|   ++|-|++..  .|..++..+.    .+.   +++|++ -|++..|
T Consensus       158 AVPlfiqlL~----s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~----ss~~~ismlRn~-TWtLSNl  228 (526)
T COG5064         158 AVPLFIQLLS----STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLL----SSAIHISMLRNA-TWTLSNL  228 (526)
T ss_pred             chHHHHHHHc----CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHH----hccchHHHHHHh-HHHHHHh
Confidence            4666666665    455679999999999996   566666533  3555555444    322   567765 4788877


Q ss_pred             HHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHH-HHHHHHHHhcCCchhhHHHH
Q 002658          148 SKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQK-LCARICKLLSNQNFMAKASL  226 (896)
Q Consensus       148 A~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~-LlPRL~kLLks~s~kaK~al  226 (896)
                      ++-= .|  +..-..+...++.|+..+-.-++.|-.-||-|+.-+.+...+.+...|+. +.+||+++|.|++.++..-+
T Consensus       229 cRGk-nP--~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPa  305 (526)
T COG5064         229 CRGK-NP--PPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPA  305 (526)
T ss_pred             hCCC-CC--CCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHH
Confidence            7654 22  22346677889999999988899999999999999988765555556663 78999999999999998888


Q ss_pred             HHHHHHHHhcc-ccCcccH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhh-----HHHHHHHHHhhhcCC
Q 002658          227 LPVVGSLSQVG-AIAPQSL-EPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDG-----ATSTLTVLEACRFDK  299 (896)
Q Consensus       227 L~aIgSLA~vg-a~~~pyl-e~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py-----~~~~I~~LE~~RfDK  299 (896)
                      |..+|-++... ......+ -.+++.+...|++..-.+||.||=+|+.|...--+.+.-.     ++++|+.|....|--
T Consensus       306 lR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~  385 (526)
T COG5064         306 LRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKI  385 (526)
T ss_pred             HHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            88888875322 1111011 1234555556888777999999999998865544544422     467788887666653


Q ss_pred             Ch
Q 002658          300 IK  301 (896)
Q Consensus       300 vK  301 (896)
                      -|
T Consensus       386 kK  387 (526)
T COG5064         386 KK  387 (526)
T ss_pred             HH
Confidence            34

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.76  E-value=0.0018  Score=79.30  Aligned_cols=229  Identities=17%  Similarity=0.114  Sum_probs=170.5

Q ss_pred             CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002658           76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG  154 (896)
Q Consensus        76 ~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~-d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~  154 (896)
                      .+..+++.+....++..+.+|-.-+..+..+-..-. ..+..+....+|.|...-.|..-.||.+..+.+-+++..+   
T Consensus       434 ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~---  510 (759)
T KOG0211|consen  434 TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQL---  510 (759)
T ss_pred             CccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhh---
Confidence            377777777776777778888887755533322222 3366777888999998888888899999999999999888   


Q ss_pred             cccCCchhHhhhHHHHHH-HHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 002658          155 KEENNGTVVGLFVKPLFE-AMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSL  233 (896)
Q Consensus       155 ~~e~~~~~~~~lL~pL~e-aL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSL  233 (896)
                      +.    .++...+.+|+. -|.+..-.++.||+.+|.++++..+  ..-+...++|+++.+..+++|..|...+.+|..+
T Consensus       511 ~~----~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~l  584 (759)
T KOG0211|consen  511 GV----EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHEL  584 (759)
T ss_pred             hh----HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHH
Confidence            21    223333333332 2344556799999999999999765  2245778999999999999999999999999999


Q ss_pred             HhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 002658          234 SQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQ  312 (896)
Q Consensus       234 A~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe  312 (896)
                      +.+. .-.-+.+.++|.+.++..|....+|..|+..|..+...+. +...   ..+..+++....|...-||-.|+.|+.
T Consensus       585 a~v~-g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~---~~v~pll~~L~~d~~~dvr~~a~~a~~  660 (759)
T KOG0211|consen  585 AEVL-GQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD---EEVLPLLETLSSDQELDVRYRAILAFG  660 (759)
T ss_pred             HHHh-ccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH---HHHHHHHHHhccCcccchhHHHHHHHH
Confidence            8754 1233567899999999999999999999999998888777 4333   334445555566888888888887777


Q ss_pred             HHHHh
Q 002658          313 LWKKI  317 (896)
Q Consensus       313 ~WK~l  317 (896)
                      .....
T Consensus       661 ~i~l~  665 (759)
T KOG0211|consen  661 SIELS  665 (759)
T ss_pred             HHHHH
Confidence            65543

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=0.0051  Score=74.90  Aligned_cols=221  Identities=18%  Similarity=0.127  Sum_probs=164.1

Q ss_pred             cCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhH
Q 002658           88 SNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFV  167 (896)
Q Consensus        88 ~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL  167 (896)
                      ..++.++.|-.+++-|.-++|-....-.-+..+++...+..|+|.|+-|.--|...+..|++.+-           ..++
T Consensus       736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----------e~il  804 (982)
T KOG4653|consen  736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----------EDIL  804 (982)
T ss_pred             hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----------hhhH
Confidence            45678999999999999999965444555678999999999999999999999999999999982           2366


Q ss_pred             HHHHH-HHhcCCHh-----HHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccc-cC
Q 002658          168 KPLFE-AMMEQNKG-----VQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGA-IA  240 (896)
Q Consensus       168 ~pL~e-aL~Eqnk~-----VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga-~~  240 (896)
                      +-|.+ ...+.++.     ...|  .|+-++++..++....|+..|+..++..++.|...-|+..+..+|-+-..-+ ..
T Consensus       805 ~dL~e~Y~s~k~k~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v  882 (982)
T KOG4653|consen  805 PDLSEEYLSEKKKLQTDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV  882 (982)
T ss_pred             HHHHHHHHhcccCCCccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence            66666 33333222     3334  8889999998998889999999999999999988788887777777643211 11


Q ss_pred             cccHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHHhcchHHHhhH-----HHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002658          241 PQSLEPLLQSIHECL-GSTDWATRKAAADALSALALHSSNLVIDGA-----TSTLTVLEACRFDKIKPVRDSMNEALQLW  314 (896)
Q Consensus       241 ~pyle~lLp~L~e~L-sddDW~lRKaA~EaLgsLA~avGe~L~Py~-----~~~I~~LE~~RfDKvKpVRDaA~eALe~W  314 (896)
                      ...|-.++..+.... +|....+|++|+..+..+....|+.+.|+.     +-....+...|.+...-+|=-+..+++..
T Consensus       883 sd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei  962 (982)
T KOG4653|consen  883 SDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI  962 (982)
T ss_pred             hHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            225556666666654 456789999999999999999997777754     22233445666666666776767777777


Q ss_pred             HHhccCC
Q 002658          315 KKIAGKV  321 (896)
Q Consensus       315 K~la~~~  321 (896)
                      ..+...+
T Consensus       963 ~a~l~n~  969 (982)
T KOG4653|consen  963 QAALEND  969 (982)
T ss_pred             HHHHHhc
Confidence            6666543

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=97.61  E-value=0.0015  Score=75.23  Aligned_cols=195  Identities=15%  Similarity=0.188  Sum_probs=141.6

Q ss_pred             HHHHHHcCC---ChhHHHHHHHHHHHHHhc--CC--CCCHHHHHHHHhhhcCC-CChhhHHHHHHHHHHHHHHhcccchh
Q 002658           45 ILTSLSKLA---DRDTHQIAIEDLEKTIQT--LS--QESLPMLLNCLYESSND-PKPAVKKESVRLLALVCELHSELTST  116 (896)
Q Consensus        45 ll~~L~KLs---DRDT~k~Aa~eLD~La~~--L~--pd~Lp~fLs~L~es~ss-~k~~vRKeAIllLG~IAeg~~d~I~P  116 (896)
                      +...|.++.   --+-++.|+.+|-.+...  ++  .+-|.-+|..+++.+.+ .+...|+.|+++|.-+++..+..+..
T Consensus       288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D  367 (516)
T KOG2956|consen  288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD  367 (516)
T ss_pred             HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence            344455552   345788899989888862  11  11277778888888766 67888999999999999999999999


Q ss_pred             hHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002658          117 HVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC  195 (896)
Q Consensus       117 ~LpkIL~~IlrrLkDpDs-~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~  195 (896)
                      +-+-.+..++..-+|++. .+|.|.-+++..++.+.   +.    .-+..+.+.|+.   +..|. -.++.-++.+++|.
T Consensus       368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~---P~----~~I~~i~~~Ilt---~D~~~-~~~~iKm~Tkl~e~  436 (516)
T KOG2956|consen  368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL---PL----QCIVNISPLILT---ADEPR-AVAVIKMLTKLFER  436 (516)
T ss_pred             hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC---ch----hHHHHHhhHHhc---CcchH-HHHHHHHHHHHHhh
Confidence            988888999999999877 55777777788888887   32    123333333322   33333 23456699999998


Q ss_pred             cC-CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hcc-ccCcccHHHHHHH
Q 002658          196 AS-DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS-QVG-AIAPQSLEPLLQS  250 (896)
Q Consensus       196 a~-d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA-~vg-a~~~pyle~lLp~  250 (896)
                      .. +.....++.++|-+++..++.+.-+|..++=|+-++. .+| ..+.||++.+=..
T Consensus       437 l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~s  494 (516)
T KOG2956|consen  437 LSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSS  494 (516)
T ss_pred             cCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHH
Confidence            64 3445789999999999999998888887777777774 688 7888998876443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.61  E-value=0.007  Score=75.80  Aligned_cols=258  Identities=17%  Similarity=0.218  Sum_probs=169.5

Q ss_pred             CChhHHHHHHHHHHHHHh---cCCCCCHHHHHHHHhhhc----CC-CChhhHHHHHHHHHHHHHHhcccc----------
Q 002658           53 ADRDTHQIAIEDLEKTIQ---TLSQESLPMLLNCLYESS----ND-PKPAVKKESVRLLALVCELHSELT----------  114 (896)
Q Consensus        53 sDRDT~k~Aa~eLD~La~---~L~pd~Lp~fLs~L~es~----ss-~k~~vRKeAIllLG~IAeg~~d~I----------  114 (896)
                      ++.+.|..|+..|-++..   .+++..-..|-.+|+..+    .+ ....+|-+.-..|+.+|.....++          
T Consensus       474 s~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g  553 (1431)
T KOG1240|consen  474 SEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAG  553 (1431)
T ss_pred             chHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            345678888887776654   456655455555554443    33 556677775555555555422110          


Q ss_pred             ---------------hhh---HHHHHH-HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh
Q 002658          115 ---------------STH---VTKIIS-HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM  175 (896)
Q Consensus       115 ---------------~P~---LpkIL~-~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~  175 (896)
                                     ..+   |.+++. .+...|.|+++.||.+-.+.|+.|+....+..      .-+.+|.-|+..|.
T Consensus       554 ~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k------sND~iLshLiTfLN  627 (1431)
T KOG1240|consen  554 MLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK------SNDVILSHLITFLN  627 (1431)
T ss_pred             cccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc------cccchHHHHHHHhc
Confidence                           012   333333 45566999999999999999999999996542      24568899999999


Q ss_pred             cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhh
Q 002658          176 EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECL  255 (896)
Q Consensus       176 Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~L  255 (896)
                      +.++..-.+=+-.+.-++=..+..  ..=+.|+|-|...|.++-.-+-..+|.|+..++..|-.-.+++-.++.....+|
T Consensus       628 DkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL  705 (1431)
T KOG1240|consen  628 DKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLL  705 (1431)
T ss_pred             CccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhhe
Confidence            888888754443333322222221  112357888888888876666666777888888777666889999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcc--h-------HHHhhHHHHH------HHHHhhhcCCChhhHHHHHHHH-------HH
Q 002658          256 GSTDWATRKAAADALSALALHSS--N-------LVIDGATSTL------TVLEACRFDKIKPVRDSMNEAL-------QL  313 (896)
Q Consensus       256 sddDW~lRKaA~EaLgsLA~avG--e-------~L~Py~~~~I------~~LE~~RfDKvKpVRDaA~eAL-------e~  313 (896)
                      -.++.=+|.++|..|.+++..++  |       .+.||+..-+      +.|..|..+-+.  |.+-+..|       .|
T Consensus       706 ~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~~~v~~i~s~~~LlsclkpPVs--Rsv~~~l~r~~~ens~f  783 (1431)
T KOG1240|consen  706 CHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLERPVIQIESKEVLLSCLKPPVS--RSVFNQLLRWSDENSSF  783 (1431)
T ss_pred             eCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhhccHhhhcchHHHHHHhcCCCc--HHHHHHHHHHhhcchHH
Confidence            99887799999999999998877  2       4556654332      234566655553  44433333       46


Q ss_pred             HHHhccC
Q 002658          314 WKKIAGK  320 (896)
Q Consensus       314 WK~la~~  320 (896)
                      |+.+-..
T Consensus       784 ~k~l~~~  790 (1431)
T KOG1240|consen  784 WKKLLER  790 (1431)
T ss_pred             HHHHHHH
Confidence            7766544

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=97.60  E-value=0.00081  Score=69.56  Aligned_cols=142  Identities=15%  Similarity=0.218  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHHHHhc-ccchhhHHHHHHHH------------HHhhcCCChHHHHHHHHHHHHHHHHHhcc------c
Q 002658           95 VKKESVRLLALVCELHS-ELTSTHVTKIISHI------------VKRLKDSDSGMKEACRDSIGSLSKLYLNG------K  155 (896)
Q Consensus        95 vRKeAIllLG~IAeg~~-d~I~P~LpkIL~~I------------lrrLkDpDs~VR~Ac~~aLG~LA~~li~~------~  155 (896)
                      +|-.|+.+|..+++... ..+-.|++.++|..            .-.|+||++.||.+++.++..|-+.. ++      .
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs-k~~L~~Ae~   80 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS-KPFLAQAEE   80 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc-HHHHHHHHh
Confidence            57777777777777733 44666777776644            44588999999999999999887654 21      1


Q ss_pred             ccCCc-----------hhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHHhcCCchh
Q 002658          156 EENNG-----------TVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASD--PPVVAFQKLCARICKLLSNQNFM  221 (896)
Q Consensus       156 ~e~~~-----------~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a~d--~~~~yL~~LlPRL~kLLks~s~k  221 (896)
                      ..+..           ..+-++=..|+.+| .|++..+....+-||+.+|++.+.  ...+++.+++..+.+++.+.+..
T Consensus        81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~  160 (182)
T PF13251_consen   81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN  160 (182)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence            11000           12333334455555 477888999999999999999854  44578999999999999998888


Q ss_pred             hHHHHHHHHHHHHhcc
Q 002658          222 AKASLLPVVGSLSQVG  237 (896)
Q Consensus       222 aK~alL~aIgSLA~vg  237 (896)
                      ++.+++.|+|+++.+.
T Consensus       161 v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  161 VRVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9999999999997654

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.53  E-value=0.002  Score=78.72  Aligned_cols=248  Identities=15%  Similarity=0.155  Sum_probs=168.8

Q ss_pred             HHHHHHhcC-CCCCHHHHHHHHhhhcCCC-----ChhhHHHHHHHHHHHH-----HHhcccchhhHHHHHHHHHHhhcCC
Q 002658           64 DLEKTIQTL-SQESLPMLLNCLYESSNDP-----KPAVKKESVRLLALVC-----ELHSELTSTHVTKIISHIVKRLKDS  132 (896)
Q Consensus        64 eLD~La~~L-~pd~Lp~fLs~L~es~ss~-----k~~vRKeAIllLG~IA-----eg~~d~I~P~LpkIL~~IlrrLkDp  132 (896)
                      .+..+++.. ..+.+..++...+-+-...     ....+..++-.+.-+-     +.|++..     .|-..++..|++|
T Consensus       753 ~~k~~~~~~~~~~~~~~l~~~~~vs~~~v~~y~gs~dls~~al~~l~Wv~KaLl~R~~~~s~-----~ia~klld~Ls~~  827 (1030)
T KOG1967|consen  753 ALKTTANLKLKEEAIRQLFSAKFVSEKKVENYCGSLDLSEIALTVLAWVTKALLLRNHPESS-----EIAEKLLDLLSGP  827 (1030)
T ss_pred             chhhhhhhhcccHHHHHHHHHHhhhhHhHhhccCCcchhhHHHHHHHHHHHHHHHcCCcccc-----hHHHHHHHhcCCc
Confidence            334444432 2334666666655332100     1223555555554443     3344432     2334456667664


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcc-cccCC--------chhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCC-Cch
Q 002658          133 DSGMKEACRDSIGSLSKLYLNG-KEENN--------GTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDP-PVV  202 (896)
Q Consensus       133 Ds~VR~Ac~~aLG~LA~~li~~-~~e~~--------~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~-~~~  202 (896)
                        .+-..+.+++..++...... ...++        ...+..++|.|.+......-.+.--=..+|..++-+.+.+ ..|
T Consensus       828 --~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp  905 (1030)
T KOG1967|consen  828 --STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLP  905 (1030)
T ss_pred             --cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhcc
Confidence              45566666666665544221 00011        1235556666666664222222222356788888877654 357


Q ss_pred             hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHhcc
Q 002658          203 AFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGSTD---WATRKAAADALSALALHSS  278 (896)
Q Consensus       203 yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vga~~~pyle~lLp~L~e~LsddD---W~lRKaA~EaLgsLA~avG  278 (896)
                      .++.|+|-|++.|.-++.-+|...+.+|..+.. .+.....|++.++|.++..=.+.|   ..+|..|++||+.|...+|
T Consensus       906 ~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P  985 (1030)
T KOG1967|consen  906 QFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLP  985 (1030)
T ss_pred             chhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCC
Confidence            899999999999999999999999999988754 446678999999999999877655   7899999999999999999


Q ss_pred             -hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658          279 -NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA  318 (896)
Q Consensus       279 -e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la  318 (896)
                       ..+.||.+.+|++|.-+.-||-+-||.-|..+=+-|-.+.
T Consensus       986 ~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l~ 1026 (1030)
T KOG1967|consen  986 TKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYMLG 1026 (1030)
T ss_pred             CcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhcc
Confidence             8899999999999999999999999999999999998876

>TIGR02270 conserved hypothetical protein

Probab=97.50  E-value=0.0014  Score=75.46  Aligned_cols=151  Identities=18%  Similarity=0.126  Sum_probs=98.7

Q ss_pred             HHHHHHHHHhh-cCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC
Q 002658          119 TKIISHIVKRL-KDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS  197 (896)
Q Consensus       119 pkIL~~IlrrL-kDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~  197 (896)
                      +..++.++..| .|+++.|+.+|+.++...     +         -+..+..|+++|.+.++.|..+++.+|..+-.   
T Consensus        53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~-----~---------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~---  115 (410)
T TIGR02270        53 KAATELLVSALAEADEPGRVACAALALLAQ-----E---------DALDLRSVLAVLQAGPEGLCAGIQAALGWLGG---  115 (410)
T ss_pred             HhHHHHHHHHHhhCCChhHHHHHHHHHhcc-----C---------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc---
Confidence            34467778888 577788877666555311     0         11247788888888888888888888875332   


Q ss_pred             CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002658          198 DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS  277 (896)
Q Consensus       198 d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~av  277 (896)
                             +...+.|+++|++.+..+|.+++.+++-.   +.       ...+.|..+|.+.+..+|..|+.+|+.|....
T Consensus       116 -------~~a~~~L~~~L~~~~p~vR~aal~al~~r---~~-------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~  178 (410)
T TIGR02270       116 -------RQAEPWLEPLLAASEPPGRAIGLAALGAH---RH-------DPGPALEAALTHEDALVRAAALRALGELPRRL  178 (410)
T ss_pred             -------hHHHHHHHHHhcCCChHHHHHHHHHHHhh---cc-------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc
Confidence                   34677788888888888887766555542   10       12345666677888888888888888766432


Q ss_pred             chHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002658          278 SNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL  313 (896)
Q Consensus       278 Ge~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~  313 (896)
                      .          +..|...+.|.++.||..|+.++-.
T Consensus       179 a----------~~~L~~al~d~~~~VR~aA~~al~~  204 (410)
T TIGR02270       179 S----------ESTLRLYLRDSDPEVRFAALEAGLL  204 (410)
T ss_pred             c----------hHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            1          1112233668888888888777733

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.48  E-value=0.0014  Score=73.45  Aligned_cols=227  Identities=19%  Similarity=0.182  Sum_probs=148.1

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhc------CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhh-
Q 002658           45 ILTSLSKLADRDTHQIAIEDLEKTIQT------LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTH-  117 (896)
Q Consensus        45 ll~~L~KLsDRDT~k~Aa~eLD~La~~------L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~-  117 (896)
                      ++-.|.+.+|.|.+-.++..|-.|+-.      |-. .=|.+++.|.+-+.+..+.++=.|.++|++++.-. ++..|- 
T Consensus       212 vLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv  289 (550)
T KOG4224|consen  212 VLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQ-AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIV  289 (550)
T ss_pred             hhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHh-cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHH
Confidence            455677889999988888877665531      211 12344555655566777889999999999998632 222221 


Q ss_pred             HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhc
Q 002658          118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECA  196 (896)
Q Consensus       118 LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~-Eqnk~VQ~gAasALAkIIE~a  196 (896)
                      -.-=+|.+++.|++|--..--+.+.+|..|+-+=..+..    =.-.-||+||...|. ..|..+|-+|...|-.+--..
T Consensus       290 ~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~l----I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass  365 (550)
T KOG4224|consen  290 EAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVL----IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS  365 (550)
T ss_pred             hcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccc----eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh
Confidence            112256777888887654444555556555544322211    112348999999995 568889999999888776544


Q ss_pred             CCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccH-H-HHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 002658          197 SDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSL-E-PLLQSIHECLGSTDWATRKAAADALSAL  273 (896)
Q Consensus       197 ~d~~~~yL~-~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyl-e-~lLp~L~e~LsddDW~lRKaA~EaLgsL  273 (896)
                      ..-...+.+ --+|++..++-+....++.-+-.||..++-.. .+..|| + .++|.|++.+.+.+-++|.-|+++|+.+
T Consensus       366 e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nl  444 (550)
T KOG4224|consen  366 EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINL  444 (550)
T ss_pred             hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhh
Confidence            333333333 26788899888776666766666777665322 122222 1 3678888899999999999999999998


Q ss_pred             HHhcc
Q 002658          274 ALHSS  278 (896)
Q Consensus       274 A~avG  278 (896)
                      ..-+.
T Consensus       445 ss~v~  449 (550)
T KOG4224|consen  445 SSDVE  449 (550)
T ss_pred             hhhhH
Confidence            87664

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.47  E-value=0.00057  Score=60.24  Aligned_cols=86  Identities=17%  Similarity=0.300  Sum_probs=67.8

Q ss_pred             HHHHHHhh-cCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC
Q 002658          122 ISHIVKRL-KDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP  200 (896)
Q Consensus       122 L~~IlrrL-kDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~  200 (896)
                      |+.+++.| +|+++.||..+++++|.+       +       .+.+++.|++.+.++++.|+..|+.+|..+=       
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-------~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL-------G-------DPEAIPALIELLKDEDPMVRRAAARALGRIG-------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC-------T-------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc-------C-------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------
Confidence            57788888 999999999999999922       1       3468889999999999999999999999772       


Q ss_pred             chhHHHHHHHHHHHhcCC-chhhHHHHHHHHH
Q 002658          201 VVAFQKLCARICKLLSNQ-NFMAKASLLPVVG  231 (896)
Q Consensus       201 ~~yL~~LlPRL~kLLks~-s~kaK~alL~aIg  231 (896)
                         -+..++.|.+++.++ ...+|..++.+||
T Consensus        60 ---~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 ---DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ---HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence               245778888888774 4556777777765

>TIGR02270 conserved hypothetical protein

Probab=97.46  E-value=0.0051  Score=70.97  Aligned_cols=163  Identities=12%  Similarity=0.077  Sum_probs=114.2

Q ss_pred             HHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 002658           65 LEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSI  144 (896)
Q Consensus        65 LD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aL  144 (896)
                      ||-+... ++..+..++..|.+   +..+.++..+.++|.....          +..+..++..|.|+++.||.++..++
T Consensus        45 LdgL~~~-G~~a~~~L~~aL~~---d~~~ev~~~aa~al~~~~~----------~~~~~~L~~~L~d~~~~vr~aaa~AL  110 (410)
T TIGR02270        45 VDGLVLA-GKAATELLVSALAE---ADEPGRVACAALALLAQED----------ALDLRSVLAVLQAGPEGLCAGIQAAL  110 (410)
T ss_pred             HHHHHHh-hHhHHHHHHHHHhh---CCChhHHHHHHHHHhccCC----------hHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            5554431 34446666666642   3446677766665532211          11377889999999999999999999


Q ss_pred             HHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHH
Q 002658          145 GSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKA  224 (896)
Q Consensus       145 G~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~  224 (896)
                      |.    +   +       .+.....|...|.+.++.|+.++..++......           -.+.+.++|++.++.++.
T Consensus       111 g~----i---~-------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-----------~~~~L~~~L~d~d~~Vra  165 (410)
T TIGR02270       111 GW----L---G-------GRQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-----------PGPALEAALTHEDALVRA  165 (410)
T ss_pred             hc----C---C-------chHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-----------hHHHHHHHhcCCCHHHHH
Confidence            83    2   1       345677888888888999998887776663221           235678888999999999


Q ss_pred             HHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 002658          225 SLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALAL  275 (896)
Q Consensus       225 alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~  275 (896)
                      .++.++|.+-..         ..++.|...+.+.+..+|.+|+.+|+.+..
T Consensus       166 ~A~raLG~l~~~---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~  207 (410)
T TIGR02270       166 AALRALGELPRR---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS  207 (410)
T ss_pred             HHHHHHHhhccc---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence            999999887321         334556677999999999999999977643

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.41  E-value=0.053  Score=59.64  Aligned_cols=133  Identities=22%  Similarity=0.243  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHhcCCCCC-HHHHHHHH-hhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHH
Q 002658           60 IAIEDLEKTIQTLSQES-LPMLLNCL-YESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMK  137 (896)
Q Consensus        60 ~Aa~eLD~La~~L~pd~-Lp~fLs~L-~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR  137 (896)
                      ++...|+.+...+.+.. +..++..| .....+.++.+|+.|+.+||..+-...+....|++-++..+.+    .+..|+
T Consensus         6 i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~----~~~~v~   81 (298)
T PF12719_consen    6 ITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK----DDEEVK   81 (298)
T ss_pred             HHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh----CCHHHH
Confidence            34445666655555533 55666544 5777888999999999999999998888888888776666522    388999


Q ss_pred             HHHHHHHHHHHHHHhcccccCC-----chhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002658          138 EACRDSIGSLSKLYLNGKEENN-----GTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA  196 (896)
Q Consensus       138 ~Ac~~aLG~LA~~li~~~~e~~-----~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a  196 (896)
                      .+|..++.-+.-..-...++..     ......+++.+...|...++.+|..|+.+|+|+.=.-
T Consensus        82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~  145 (298)
T PF12719_consen   82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG  145 (298)
T ss_pred             HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence            9999998888876622111111     1224568888888997779999999999999998764

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.39  E-value=0.015  Score=71.27  Aligned_cols=239  Identities=18%  Similarity=0.149  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccch---
Q 002658           41 MKQKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS---  115 (896)
Q Consensus        41 Lk~rll~~L~KL--sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~---  115 (896)
                      +|+.++.+|..+  +|..++.+|-..|..+-.   ++.|-..|.-+.-.. ...-+.|+.|+..|....+.|+-...   
T Consensus         2 ~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~---~~~f~~aL~~va~~~-~~sl~lRQ~A~v~L~~yie~hW~~~~E~f   77 (1005)
T KOG2274|consen    2 VKQAIIELLSGSLSADQNVRSQAETQLKQLEL---TEGFGVALAEVAANK-DASLPLRQIALVLLKRYIEKHWSPNFEAF   77 (1005)
T ss_pred             cHHHHHHHHHhhcCCChhHHHHHHHHHhcccc---chHHHHHHHHHHhCc-ccCchHHHHHHHHHHHHHHHhCCChHhhc
Confidence            578899999877  788888888877775543   333444444443222 23456789999999999999884321   


Q ss_pred             --h------hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHH
Q 002658          116 --T------HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAM  187 (896)
Q Consensus       116 --P------~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAas  187 (896)
                        |      --..|...++..|-|+...+|.++..++..++.+-.-       +.|+++++.++++|...|.+.--||..
T Consensus        78 r~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~P-------d~WpElv~~i~~~l~~~n~n~i~~am~  150 (1005)
T KOG2274|consen   78 RYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYP-------DEWPELVPFILKLLSSGNENSIHGAMR  150 (1005)
T ss_pred             cCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCc-------hhhHHHHHHHHHHHhccchhhhhhHHH
Confidence              1      1234555667777799999999999999999998732       449999999999998888888899999


Q ss_pred             HHHHHHHhcC-CCC---chhHHHHHHHHHHHhcCCchhhHH--HHHHHHHHH---Hh-cc----ccCcccHHHHHHHHHH
Q 002658          188 CMAKMVECAS-DPP---VVAFQKLCARICKLLSNQNFMAKA--SLLPVVGSL---SQ-VG----AIAPQSLEPLLQSIHE  253 (896)
Q Consensus       188 ALAkIIE~a~-d~~---~~yL~~LlPRL~kLLks~s~kaK~--alL~aIgSL---A~-vg----a~~~pyle~lLp~L~e  253 (896)
                      ||+.+..... +.+   .+..-.=|-+++++....+...+.  +.+....++   +. .+    +.....+..+|+...+
T Consensus       151 vL~el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~  230 (1005)
T KOG2274|consen  151 VLAELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMD  230 (1005)
T ss_pred             HHHHHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999997742 111   122112234556666655444333  322222222   21 12    1223344444444444


Q ss_pred             hhCC-------CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH
Q 002658          254 CLGS-------TDWATRKAAADALSALALHSSNLVIDGATSTLT  290 (896)
Q Consensus       254 ~Lsd-------dDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~  290 (896)
                      .+..       .+|.+|...+.++..+....+..+.||+.....
T Consensus       231 ~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~  274 (1005)
T KOG2274|consen  231 ILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFS  274 (1005)
T ss_pred             HHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhh
Confidence            3322       579999999999999999999888888765544

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.38  E-value=0.016  Score=68.32  Aligned_cols=239  Identities=20%  Similarity=0.228  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHhc-CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccch---hhHHHHH-------------
Q 002658           60 IAIEDLEKTIQT-LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS---THVTKII-------------  122 (896)
Q Consensus        60 ~Aa~eLD~La~~-L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~---P~LpkIL-------------  122 (896)
                      -++..+-.++.. +.++.+.+..+.|...+.++....|-+|++.|..++-.++..+.   +.++.++             
T Consensus       283 E~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAIT  362 (898)
T COG5240         283 EAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAIT  362 (898)
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHH
Confidence            334444444433 46666888888888888888999999999999999988776532   2233332             


Q ss_pred             ---------------HHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh-cCCHhHHHHHH
Q 002658          123 ---------------SHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAA  186 (896)
Q Consensus       123 ---------------~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~-Eqnk~VQ~gAa  186 (896)
                                     ..|...+.|-.-...-++.+++..|+-...        ..|..++.-|...|. +-.-.-..++.
T Consensus       363 tLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp--------~k~~s~l~FL~~~L~~eGg~eFK~~~V  434 (898)
T COG5240         363 TLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFP--------SKKLSYLDFLGSSLLQEGGLEFKKYMV  434 (898)
T ss_pred             HHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCc--------HHHHHHHHHHHHHHHhcccchHHHHHH
Confidence                           222222222222222233333443333331        224555555555552 22333344455


Q ss_pred             HHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHH
Q 002658          187 MCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAA  266 (896)
Q Consensus       187 sALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA  266 (896)
                      -|+..+++..++.-.-.|..||.    .+.+--|  -..++..++-+-.-|... +.=..++..+.+.+.-++--+|.+|
T Consensus       435 daisd~~~~~p~skEraLe~LC~----fIEDcey--~~I~vrIL~iLG~EgP~a-~~P~~yvrhIyNR~iLEN~ivRsaA  507 (898)
T COG5240         435 DAISDAMENDPDSKERALEVLCT----FIEDCEY--HQITVRILGILGREGPRA-KTPGKYVRHIYNRLILENNIVRSAA  507 (898)
T ss_pred             HHHHHHHhhCchHHHHHHHHHHH----HHhhcch--hHHHHHHHHHhcccCCCC-CCcchHHHHHHHHHHHhhhHHHHHH
Confidence            56666666544332223333433    3332222  223444444443223111 1112345555566666677899999


Q ss_pred             HHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 002658          267 ADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWK  315 (896)
Q Consensus       267 ~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK  315 (896)
                      +.||...|....+.+.|  .++..+|..|..|++++|||-|.=++.+..
T Consensus       508 v~aLskf~ln~~d~~~~--~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         508 VQALSKFALNISDVVSP--QSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             HHHHHHhccCccccccH--HHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            99999999998886654  567778999999999999998766666654

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.36  E-value=0.022  Score=63.36  Aligned_cols=199  Identities=20%  Similarity=0.179  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHhhcCCChHHHHHHHHHHHHHH-HHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002658          118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLS-KLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA  196 (896)
Q Consensus       118 LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA-~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a  196 (896)
                      +..-+.-.+..|.|.....|.++...|-.+. .++..   +........++..+...|.-....-|.-|+.+++-++=..
T Consensus        41 ~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~---d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl  117 (309)
T PF05004_consen   41 LEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLP---DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL  117 (309)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc
Confidence            3444556777888999999999999876665 33311   1223446667777777773333355666666666665443


Q ss_pred             --CCCCchhHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhccccCcccHHHHHHHHH---H--hhCC----------
Q 002658          197 --SDPPVVAFQKLCARICKLLSNQ--NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIH---E--CLGS----------  257 (896)
Q Consensus       197 --~d~~~~yL~~LlPRL~kLLks~--s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~---e--~Lsd----------  257 (896)
                        +.....++..+.|.|.+++.+.  +.++|.+++.|++-+.-++..-..-+..+|.+|.   .  +++.          
T Consensus       118 g~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~  197 (309)
T PF05004_consen  118 GAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAE  197 (309)
T ss_pred             CCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCC
Confidence              3445578999999999999875  4577888888888875444222333443333332   2  2222          


Q ss_pred             CCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhcc
Q 002658          258 TDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAG  319 (896)
Q Consensus       258 dDW~lRKaA~EaLgsLA~avG-e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~  319 (896)
                      ++..+..+|+.+.+.|+..++ ..+..+....+..|-.+..-.+..||-+|=|+|-+.=++..
T Consensus       198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~  260 (309)
T PF05004_consen  198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR  260 (309)
T ss_pred             CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence            246799999999999999999 45777777788877766666777899999999998877775

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.35  E-value=0.0096  Score=60.73  Aligned_cols=110  Identities=19%  Similarity=0.200  Sum_probs=83.4

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChH
Q 002658           56 DTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSG  135 (896)
Q Consensus        56 DT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~  135 (896)
                      ..+.-++-.|--+...+ |..+.++++.|...+.++++.+|+.|+.+|..+.....-.+.   +.++..++..|.|+++.
T Consensus         3 ~vR~n~i~~l~DL~~r~-~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~D~~~~   78 (178)
T PF12717_consen    3 SVRNNAIIALGDLCIRY-PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLVDENPE   78 (178)
T ss_pred             HHHHHHHHHHHHHHHhC-cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHcCCCHH
Confidence            44555666666555555 447889999999999999999999999999998875443444   44477778888999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc
Q 002658          136 MKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME  176 (896)
Q Consensus       136 VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E  176 (896)
                      ||+.|...+..+.... .+      ..+...++.++-.|..
T Consensus        79 Ir~~A~~~~~e~~~~~-~~------~~i~~~~~e~i~~l~~  112 (178)
T PF12717_consen   79 IRSLARSFFSELLKKR-NP------NIIYNNFPELISSLNN  112 (178)
T ss_pred             HHHHHHHHHHHHHHhc-cc------hHHHHHHHHHHHHHhC
Confidence            9999999999988885 11      3356677777777754

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.35  E-value=0.0084  Score=73.65  Aligned_cols=253  Identities=16%  Similarity=0.214  Sum_probs=157.1

Q ss_pred             HHHHHHHHcC-CChhH--HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHH-HHHHHHHHHHHHhcccchhhH
Q 002658           43 QKILTSLSKL-ADRDT--HQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKK-ESVRLLALVCELHSELTSTHV  118 (896)
Q Consensus        43 ~rll~~L~KL-sDRDT--~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRK-eAIllLG~IAeg~~d~I~P~L  118 (896)
                      .-++..|-.+ .+.+|  ++-+++.|-.++..++.+.+--.+..+.......+|...+ .+.-+++...-...+  .+--
T Consensus       158 ~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~--~~vk  235 (759)
T KOG0211|consen  158 HMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPD--DAVK  235 (759)
T ss_pred             HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCCh--HHHH
Confidence            3344444444 23443  5555556655555554433222222222222122333222 222333333332221  1122


Q ss_pred             HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC
Q 002658          119 TKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD  198 (896)
Q Consensus       119 pkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d  198 (896)
                      ..+.+.....-+|-+++||.+++.-+|.++..+.+.      .....+++-+...+.|....|+++|..++..+.+....
T Consensus       236 ~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~------~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~  309 (759)
T KOG0211|consen  236 RELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESE------IVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDD  309 (759)
T ss_pred             HHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHH------HHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCC
Confidence            344555556667888999999999999999999542      33555555555555777788999999999999987655


Q ss_pred             CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002658          199 PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS-QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS  277 (896)
Q Consensus       199 ~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA-~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~av  277 (896)
                      .. +..+.+++.++++.+.++-.++.+.......+. .+|.  ..+-....++....+.+..|..|.+++.-...++...
T Consensus       310 ~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l  386 (759)
T KOG0211|consen  310 DD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL  386 (759)
T ss_pred             ch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc
Confidence            44 677789999999999998888876655544443 3442  2233355677778899999999988887777777666


Q ss_pred             c-hHHHh-hHHHHHHHHHhhhcCCChhhHHH
Q 002658          278 S-NLVID-GATSTLTVLEACRFDKIKPVRDS  306 (896)
Q Consensus       278 G-e~L~P-y~~~~I~~LE~~RfDKvKpVRDa  306 (896)
                      . +.+.. ....++.+++.+-.|....||.+
T Consensus       387 ~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a  417 (759)
T KOG0211|consen  387 NASCYPNIPDSSILPEVQVLVLDNALHVRSA  417 (759)
T ss_pred             CcccccccchhhhhHHHHHHHhcccchHHHH
Confidence            6 22111 23555678888888999999975

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.33  E-value=0.015  Score=71.19  Aligned_cols=176  Identities=18%  Similarity=0.213  Sum_probs=131.9

Q ss_pred             CCCCCHHHHHHHHhhhcCC----CC-hhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHh-hcCCChHHHHHHHHHHH
Q 002658           72 LSQESLPMLLNCLYESSND----PK-PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKR-LKDSDSGMKEACRDSIG  145 (896)
Q Consensus        72 L~pd~Lp~fLs~L~es~ss----~k-~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~Ilrr-LkDpDs~VR~Ac~~aLG  145 (896)
                      |+...+..|..-|.+...+    +. |..=++|+..+-.+++-.++.-.+.+++.+.++..- +.-+.+..-..|.++||
T Consensus       455 lgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~ig  534 (982)
T KOG2022|consen  455 LGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIG  534 (982)
T ss_pred             HhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHH
Confidence            4443466666666555433    33 556667999999999988888899999988876654 55568889999999999


Q ss_pred             HHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh--hH
Q 002658          146 SLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM--AK  223 (896)
Q Consensus       146 ~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~k--aK  223 (896)
                      .++.|+.+++     .+++..++.||.+|+.....+|  |...|.++||.++....+|.+.++.-.-.++...+++  .+
T Consensus       535 s~s~~l~e~P-----~~ln~sl~~L~~~Lh~sk~s~q--~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~  607 (982)
T KOG2022|consen  535 SLSNWLGEHP-----MYLNPSLPLLFQGLHNSKESEQ--AISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDR  607 (982)
T ss_pred             HHHHHHhcCC-----cccCchHHHHHHHhcCchHHHH--HHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHH
Confidence            9999995543     5688899999999973333444  5566999999999988999999888888888765443  46


Q ss_pred             HHHHHHHHHHHhc-c-ccCcccHHHHHHHHHHh
Q 002658          224 ASLLPVVGSLSQV-G-AIAPQSLEPLLQSIHEC  254 (896)
Q Consensus       224 ~alL~aIgSLA~v-g-a~~~pyle~lLp~L~e~  254 (896)
                      ..++.+||-+.+. . +..+.|+..++.+++.-
T Consensus       608 ~klm~sIGyvls~~~pEe~~kyl~~lin~il~q  640 (982)
T KOG2022|consen  608 LKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQ  640 (982)
T ss_pred             HHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHH
Confidence            6889999998642 2 44567888888766654

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=97.26  E-value=0.11  Score=56.79  Aligned_cols=229  Identities=12%  Similarity=0.091  Sum_probs=155.2

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCC-----CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 002658           53 ADRDTHQIAIEDLEKTIQTLSQE-----SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVK  127 (896)
Q Consensus        53 sDRDT~k~Aa~eLD~La~~L~pd-----~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~Ilr  127 (896)
                      .|..+|.-|+.-|-.+...++++     ++..++.++.+.+.+  +..=..++..+-.++. +.........+|+..|.+
T Consensus        11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~-~~~~~~~~~~~i~~~l~~   87 (262)
T PF14500_consen   11 EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD--HACVQPALKGLLALVK-MKNFSPESAVKILRSLFQ   87 (262)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHh-CcCCChhhHHHHHHHHHH
Confidence            57778889999999999888743     477888888888743  3333444777777773 344445556777777776


Q ss_pred             hhcCC--ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhH
Q 002658          128 RLKDS--DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAF  204 (896)
Q Consensus       128 rLkDp--Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL  204 (896)
                      ...-+  -..+|..+-..+-.|........    ...-..|+..+++.+ +|.+|+--.-++.-+..++..-+  +.++.
T Consensus        88 ~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l----~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~~  161 (262)
T PF14500_consen   88 NVDVQSLPQSTRYAVYQLLDSLLENHREAL----QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEFA  161 (262)
T ss_pred             hCChhhhhHHHHHHHHHHHHHHHHHhHHHH----HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchhH
Confidence            54433  25778888888888877763211    233467888899988 78999988888888888877543  13333


Q ss_pred             HHHHHHHHHHh----cCC---chh-hHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002658          205 QKLCARICKLL----SNQ---NFM-AKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALH  276 (896)
Q Consensus       205 ~~LlPRL~kLL----ks~---s~k-aK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~a  276 (896)
                      +.|..-+.-.+    +.|   .++ .+..+-.++.....   ..+-+.+.++|.|++.|.++...++.-++++|..-...
T Consensus       162 e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~---s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~  238 (262)
T PF14500_consen  162 EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS---STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN  238 (262)
T ss_pred             HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc---CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            33322222111    221   122 22333333333221   23445678999999999999999999999999999999


Q ss_pred             cc-hHHHhhHHHHHHHHH
Q 002658          277 SS-NLVIDGATSTLTVLE  293 (896)
Q Consensus       277 vG-e~L~Py~~~~I~~LE  293 (896)
                      .| +.+.||...+-..|.
T Consensus       239 y~~~~~~~~~~~iw~~lk  256 (262)
T PF14500_consen  239 YGADSLSPHWSTIWNALK  256 (262)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            99 889999999988775

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.25  E-value=0.0053  Score=69.05  Aligned_cols=258  Identities=13%  Similarity=0.056  Sum_probs=164.9

Q ss_pred             HHHHcCCChhHHHHHHHHHHHHHhcCCCCC-HH--HHHHHHhhhcCCCChhhHHHHHHHHHHHHHH--hcccchhhHHHH
Q 002658           47 TSLSKLADRDTHQIAIEDLEKTIQTLSQES-LP--MLLNCLYESSNDPKPAVKKESVRLLALVCEL--HSELTSTHVTKI  121 (896)
Q Consensus        47 ~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~-Lp--~fLs~L~es~ss~k~~vRKeAIllLG~IAeg--~~d~I~P~LpkI  121 (896)
                      +-|+|..|--.++.|+..|-.+.......+ +.  .-++.|.+...+.++.+|..|-.++++|+-.  +-+.+..-=|++
T Consensus       173 trLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~l  252 (550)
T KOG4224|consen  173 TRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKL  252 (550)
T ss_pred             HhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccch
Confidence            336777777799999999988876432211 11  1133344444466788999999999998754  445577778899


Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHHHHHH--hcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh--cC
Q 002658          122 ISHIVKRLKDSDSGMKEACRDSIGSLSKLY--LNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC--AS  197 (896)
Q Consensus       122 L~~IlrrLkDpDs~VR~Ac~~aLG~LA~~l--i~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~--a~  197 (896)
                      +|.++....|+++.|.-.+..+++.|+...  +.+..      -..-+|.|++.|.++.-..-.+...|+-.+-=.  ..
T Consensus       253 v~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv------~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe  326 (550)
T KOG4224|consen  253 VPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV------EAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE  326 (550)
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH------hcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc
Confidence            999999999999999999999999998754  11111      112356667777555444445556666433211  11


Q ss_pred             CCC--chhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhc-cccCccc-HHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002658          198 DPP--VVAFQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQV-GAIAPQS-LEPLLQSIHECLGSTDWATRKAAADALSA  272 (896)
Q Consensus       198 d~~--~~yL~~LlPRL~kLLks~-s~kaK~alL~aIgSLA~v-ga~~~py-le~lLp~L~e~LsddDW~lRKaA~EaLgs  272 (896)
                      -++  ..+|.+|    ..+|.-. +..+|.++.+.+.-+++. ....... -...+|-|.+.+-|..-.+|..-.-||..
T Consensus       327 ~lI~dagfl~pL----VrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~  402 (550)
T KOG4224|consen  327 VLIADAGFLRPL----VRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ  402 (550)
T ss_pred             cceecccchhHH----HHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence            121  1345444    4455543 455777888888777642 2111111 12356778888888776676666667777


Q ss_pred             HHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002658          273 LALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLW  314 (896)
Q Consensus       273 LA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~W  314 (896)
                      +|..--++..-.-..++.+|-...++...+||+-+.+||.-+
T Consensus       403 Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nl  444 (550)
T KOG4224|consen  403 LALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINL  444 (550)
T ss_pred             HHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhh
Confidence            776655433322356788888888999999998877776543

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=97.22  E-value=0.0096  Score=64.65  Aligned_cols=191  Identities=16%  Similarity=0.172  Sum_probs=132.4

Q ss_pred             CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 002658           72 LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS--ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSK  149 (896)
Q Consensus        72 L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~--d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~  149 (896)
                      ++++.|..++.+|.   .+.+|..++.+..++++.+..-.  +.+..  --.++.|...|.+|++.||.-+.+++..++.
T Consensus         9 l~~~~l~~Ll~lL~---~t~dp~i~e~al~al~n~aaf~~nq~~Ir~--~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~   83 (254)
T PF04826_consen    9 LEAQELQKLLCLLE---STEDPFIQEKALIALGNSAAFPFNQDIIRD--LGGISLIGSLLNDPNPSVREKALNALNNLSV   83 (254)
T ss_pred             cCHHHHHHHHHHHh---cCCChHHHHHHHHHHHhhccChhHHHHHHH--cCCHHHHHHHcCCCChHHHHHHHHHHHhcCC
Confidence            56667888777776   24579999999999999765221  22222  2457889999999999999999999998877


Q ss_pred             HHhcccccCCchhHhhhHHHHHHHHhc--CCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHH
Q 002658          150 LYLNGKEENNGTVVGLFVKPLFEAMME--QNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLL  227 (896)
Q Consensus       150 ~li~~~~e~~~~~~~~lL~pL~eaL~E--qnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL  227 (896)
                      ..-      .......+++.+.+.+..  -|-.+|.++..+|..+.=  .+.....+..-+|.|+.+|...+.++|..+|
T Consensus        84 ~~e------n~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv--~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vL  155 (254)
T PF04826_consen   84 NDE------NQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV--TNDYHHMLANYIPDLLSLLSSGSEKTKVQVL  155 (254)
T ss_pred             Chh------hHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC--CcchhhhHHhhHHHHHHHHHcCChHHHHHHH
Confidence            661      123456677777776633  378999988888888742  2222344666788899999999999999999


Q ss_pred             HHHHHHHhcc----ccCcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcc
Q 002658          228 PVVGSLSQVG----AIAPQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSS  278 (896)
Q Consensus       228 ~aIgSLA~vg----a~~~pyle~lLp~L~e~Lsd-dDW~lRKaA~EaLgsLA~avG  278 (896)
                      .++.-++.-.    ..+..   ..+..+...+.. .+.++...++..+..|-..+.
T Consensus       156 k~L~nLS~np~~~~~Ll~~---q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~  208 (254)
T PF04826_consen  156 KVLVNLSENPDMTRELLSA---QVLSSFLSLFNSSESKENLLRVLTFFENINENIK  208 (254)
T ss_pred             HHHHHhccCHHHHHHHHhc---cchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence            9988886311    11111   223444454544 356777777778888866666

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.18  E-value=0.0026  Score=77.81  Aligned_cols=213  Identities=13%  Similarity=0.158  Sum_probs=154.7

Q ss_pred             CChhHHHHHHHHHHHHHhcC----CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc------c-------h
Q 002658           53 ADRDTHQIAIEDLEKTIQTL----SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL------T-------S  115 (896)
Q Consensus        53 sDRDT~k~Aa~eLD~La~~L----~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~------I-------~  115 (896)
                      +..|-+.+|.+-|-=+...|    .|+..+.. ..+.+.+++  +.+-..+..+|..+..-+...      .       .
T Consensus       786 gs~dls~~al~~l~Wv~KaLl~R~~~~s~~ia-~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQ  862 (1030)
T KOG1967|consen  786 GSLDLSEIALTVLAWVTKALLLRNHPESSEIA-EKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQ  862 (1030)
T ss_pred             CCcchhhHHHHHHHHHHHHHHHcCCcccchHH-HHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHH
Confidence            44445666666554444332    34443332 223333333  334456666776665443321      1       1


Q ss_pred             hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002658          116 THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC  195 (896)
Q Consensus       116 P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~  195 (896)
                      -+...|+|.++..+.-.+..++.--..++.....++..+   .....++.++|.|+++|+=++..||..+..||..++..
T Consensus       863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~---vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~  939 (1030)
T KOG1967|consen  863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQ---VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE  939 (1030)
T ss_pred             HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHH---hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh
Confidence            256778999999998666677777777766666665332   23356889999999999999999999999999999998


Q ss_pred             cCCCCchhHHHHHHHHHHHhcCCch---hhHHHHHHHHHHHHhc-c-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002658          196 ASDPPVVAFQKLCARICKLLSNQNF---MAKASLLPVVGSLSQV-G-AIAPQSLEPLLQSIHECLGSTDWATRKAAADAL  270 (896)
Q Consensus       196 a~d~~~~yL~~LlPRL~kLLks~s~---kaK~alL~aIgSLA~v-g-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaL  270 (896)
                      .+....+|++.++|.++.+=.++++   -+|..+|.|++++... - ....+|-+.++..|..+|.|...-+|+.|+++=
T Consensus       940 ~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen  940 SETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred             ccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence            8888889999999999999887764   4889999999999763 3 457899999999999999999999999999984


Q ss_pred             H
Q 002658          271 S  271 (896)
Q Consensus       271 g  271 (896)
                      .
T Consensus      1020 ~ 1020 (1030)
T KOG1967|consen 1020 Q 1020 (1030)
T ss_pred             h
Confidence            4

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.18  E-value=0.11  Score=59.82  Aligned_cols=249  Identities=14%  Similarity=0.166  Sum_probs=163.0

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcC----------CCC---hhhHHHHHHHHHHHHHHhcccchhhHHHH
Q 002658           55 RDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSN----------DPK---PAVKKESVRLLALVCELHSELTSTHVTKI  121 (896)
Q Consensus        55 RDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~s----------s~k---~~vRKeAIllLG~IAeg~~d~I~P~LpkI  121 (896)
                      ...-..+..-+..++..++++.=..++..+....-          ...   +..++..++..+.++....+-..|.+..+
T Consensus       111 ~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~l  190 (415)
T PF12460_consen  111 DRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEEL  190 (415)
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHH
Confidence            34555666677777777776543333333332111          111   23445555666667776667777788888


Q ss_pred             HHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhc--C
Q 002658          122 ISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECA--S  197 (896)
Q Consensus       122 L~~IlrrLkD-pDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a--~  197 (896)
                      +..++..... .++.+|.+++..++.|+-.+.+.      +.+..++..++..+ ....+.....+...+.-+.-+.  +
T Consensus       191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~------~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R  264 (415)
T PF12460_consen  191 LQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD------DDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMR  264 (415)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh------hhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc
Confidence            8888887554 45899999999999999887321      35677777777777 3344444445555555555542  2


Q ss_pred             CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc--------c-cc-----CcccHHHHHHHHHHhhCCCCHHHH
Q 002658          198 DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQV--------G-AI-----APQSLEPLLQSIHECLGSTDWATR  263 (896)
Q Consensus       198 d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~v--------g-a~-----~~pyle~lLp~L~e~LsddDW~lR  263 (896)
                      ..  +.-..++.+|+.+|.++..  ...+-.+++-+..-        . +.     -.-+|..++|.|.+.....+-..|
T Consensus       265 ~~--~~~~~~~~~L~~lL~~~~~--g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k  340 (415)
T PF12460_consen  265 GH--PLATELLDKLLELLSSPEL--GQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIK  340 (415)
T ss_pred             CC--chHHHHHHHHHHHhCChhh--HHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhH
Confidence            21  3456788889999998543  33344444444311        0 11     146788899999999888666688


Q ss_pred             HHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002658          264 KAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL  313 (896)
Q Consensus       264 KaA~EaLgsLA~avG-e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~  313 (896)
                      -.-.-+|..|...+| +.+.++++.++..+-.+---.+..||.++++.|..
T Consensus       341 ~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~  391 (415)
T PF12460_consen  341 SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKM  391 (415)
T ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            888999999999999 89999999999977655544555588885555544

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.09  E-value=0.023  Score=72.71  Aligned_cols=151  Identities=17%  Similarity=0.298  Sum_probs=116.1

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCC
Q 002658           53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS  132 (896)
Q Consensus        53 sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDp  132 (896)
                      .|+++.+.++..|-..-. |. ..|.+||..|.-...++...+|--|+++|..+++.-+.-+.  .+.|...|..++.|.
T Consensus       792 ~d~~~a~li~~~la~~r~-f~-~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~Ds  867 (1692)
T KOG1020|consen  792 ADDDDAKLIVFYLAHARS-FS-QSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDS  867 (1692)
T ss_pred             ccchhHHHHHHHHHhhhH-HH-HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccc
Confidence            355666666655543322 21 14899999999888889999999999999999996544332  477888999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 002658          133 DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARIC  212 (896)
Q Consensus       133 Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~  212 (896)
                      ...||+|+++.+|+++-..        .+...+|...+.+.+.+..-.|-..+.-=|..+|+.-++.  +.+..+|-|++
T Consensus       868 sasVREAaldLvGrfvl~~--------~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakml  937 (1692)
T KOG1020|consen  868 SASVREAALDLVGRFVLSI--------PELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKML  937 (1692)
T ss_pred             hhHHHHHHHHHHhhhhhcc--------HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHH
Confidence            9999999999999988776        2557788888889999999999999999999999976553  34455555555


Q ss_pred             HHhcC
Q 002658          213 KLLSN  217 (896)
Q Consensus       213 kLLks  217 (896)
                      .-.++
T Consensus       938 rRv~D  942 (1692)
T KOG1020|consen  938 RRVND  942 (1692)
T ss_pred             HHhcc
Confidence            55444

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.00  E-value=0.17  Score=61.94  Aligned_cols=229  Identities=17%  Similarity=0.173  Sum_probs=146.2

Q ss_pred             HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhh
Q 002658           38 MVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTH  117 (896)
Q Consensus        38 ~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~  117 (896)
                      .+.+-.-|-.|.+..++. .|+.|+.+|-++-. |++++-..++.+|..-+.+..|.|=-.|+++|..+|--+-+.|-+|
T Consensus       141 aPI~llAIk~~~~D~s~y-VRk~AA~AIpKLYs-Ld~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHkn  218 (968)
T KOG1060|consen  141 APIMLLAIKKAVTDPSPY-VRKTAAHAIPKLYS-LDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKN  218 (968)
T ss_pred             HHHHHHHHHHHhcCCcHH-HHHHHHHhhHHHhc-CChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHH
Confidence            344444455555555544 88999988887764 6788888888888877888889999999999998887777778777


Q ss_pred             HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc-c-----c-------------------CCchhHhhhHHHHHH
Q 002658          118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK-E-----E-------------------NNGTVVGLFVKPLFE  172 (896)
Q Consensus       118 LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~-~-----e-------------------~~~~~~~~lL~pL~e  172 (896)
                      ..++.    +.|.|-|.==+-....+|.++|++.+-.+ .     +                   .+..-+..||..+=-
T Consensus       219 yrklC----~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkp  294 (968)
T KOG1060|consen  219 YRKLC----RLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKP  294 (968)
T ss_pred             HHHHH----hhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccH
Confidence            76654    45555554334456677888887765321 0     0                   011223444444333


Q ss_pred             HHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHH-----
Q 002658          173 AMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEP-----  246 (896)
Q Consensus       173 aL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~~pyle~-----  246 (896)
                      .|...|+.|-.++|.++.-+-   +.   .-..+++.-|+.+|.++ ..+|..+|.+|..++... ..|.||++.     
T Consensus       295 Ll~S~n~sVVmA~aql~y~lA---P~---~~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~s  367 (968)
T KOG1060|consen  295 LLQSRNPSVVMAVAQLFYHLA---PK---NQVTKIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRS  367 (968)
T ss_pred             HHhcCCcHHHHHHHhHHHhhC---CH---HHHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeec
Confidence            445668888777777655432   11   12334555566666653 335667777887775433 556666654     


Q ss_pred             -------------------------HHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcch
Q 002658          247 -------------------------LLQSIHECLGSTDWATRKAAADALSALALHSSN  279 (896)
Q Consensus       247 -------------------------lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe  279 (896)
                                               +++-++.+..+.|.++=.+|+++||.-|..++.
T Consensus       368 sDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s  425 (968)
T KOG1060|consen  368 SDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS  425 (968)
T ss_pred             CCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc
Confidence                                     233344455666777888888999988888875

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.00  E-value=0.02  Score=69.54  Aligned_cols=105  Identities=15%  Similarity=0.174  Sum_probs=65.7

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc
Q 002658           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE  156 (896)
Q Consensus        77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~  156 (896)
                      +-.+.++|..-+++.+-.+--.|+.+||   ..|..-+   .+-+.|-|.+.|+.+++.||.=|.-+..++.+...    
T Consensus       105 llLltNslknDL~s~nq~vVglAL~alg---~i~s~Em---ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P----  174 (866)
T KOG1062|consen  105 LLLLTNSLKNDLNSSNQYVVGLALCALG---NICSPEM---ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP----  174 (866)
T ss_pred             HHHHHHHHHhhccCCCeeehHHHHHHhh---ccCCHHH---hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc----
Confidence            3334455555555555554444444444   4444333   34557888888999999999888888777766651    


Q ss_pred             cCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002658          157 ENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC  195 (896)
Q Consensus       157 e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~  195 (896)
                          +....|+++--..|.+.+..|-.++.--+..+|+.
T Consensus       175 ----~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~  209 (866)
T KOG1062|consen  175 ----DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKI  209 (866)
T ss_pred             ----hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhc
Confidence                34666777777777777777766554444555544

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.96  E-value=0.0014  Score=53.91  Aligned_cols=53  Identities=30%  Similarity=0.137  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 002658          260 WATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQ  312 (896)
Q Consensus       260 W~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe  312 (896)
                      |.+|.+|+.+|+.++...++.+.||...++..|..+..|....||..|..||.
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg   53 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG   53 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999887774

...

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=96.94  E-value=0.03  Score=69.49  Aligned_cols=192  Identities=12%  Similarity=0.036  Sum_probs=153.2

Q ss_pred             hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHh
Q 002658          117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVEC  195 (896)
Q Consensus       117 ~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~  195 (896)
                      -+++|-+.+...+.|++-.=|..+.+.+......-...    .......++..++... .+.|..|-.-|+.||..+.-.
T Consensus       250 i~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~----~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~  325 (815)
T KOG1820|consen  250 ILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKE----IVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK  325 (815)
T ss_pred             hhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccc----cccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence            48889999999999999999998888877666655211    1223444555666655 577888888899999999999


Q ss_pred             cCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 002658          196 ASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALAL  275 (896)
Q Consensus       196 a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~  275 (896)
                      ++....+|...+.|.|+.-|+.....++.+++.|+-++..     ...+..+++.+.+++.+.+.+.|......|.....
T Consensus       326 lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n-----s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~  400 (815)
T KOG1820|consen  326 LRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN-----STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLR  400 (815)
T ss_pred             cchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence            9888889999999999999999888888888888888754     34577888999999999999999998888888777


Q ss_pred             hcch--HHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHh
Q 002658          276 HSSN--LVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKI  317 (896)
Q Consensus       276 avGe--~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~l  317 (896)
                      -.+.  ....-...++..+-..-.|+.++||.++.+++-....+
T Consensus       401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~  444 (815)
T KOG1820|consen  401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV  444 (815)
T ss_pred             hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence            7773  23333677777888888899999999999988766553

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.089  Score=65.91  Aligned_cols=264  Identities=17%  Similarity=0.219  Sum_probs=157.8

Q ss_pred             HHHHHHHHHHH--HcC--CChhHHHHHHHHHHHHHhcCC----CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHh
Q 002658           39 VEMKQKILTSL--SKL--ADRDTHQIAIEDLEKTIQTLS----QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELH  110 (896)
Q Consensus        39 ~~Lk~rll~~L--~KL--sDRDT~k~Aa~eLD~La~~L~----pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~  110 (896)
                      ..++..++.-|  +|+  =|..++..|+..|.++...-+    ..-|+++|+++.    +.+..-|.-+.++.|-+.-.+
T Consensus       538 ~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~l----s~~~~~r~g~~la~~ev~~~~  613 (1133)
T KOG1943|consen  538 SGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTL----SKDASMRHGVFLAAGEVIGAL  613 (1133)
T ss_pred             hhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhc----CCChHHhhhhHHHHHHHHHHh
Confidence            44566666644  456  488899999999999776432    122556555554    455666777666666665433


Q ss_pred             ccc--chhh--------HHHHHH--------------------------------------------HHHHhhcCCChHH
Q 002658          111 SEL--TSTH--------VTKIIS--------------------------------------------HIVKRLKDSDSGM  136 (896)
Q Consensus       111 ~d~--I~P~--------LpkIL~--------------------------------------------~IlrrLkDpDs~V  136 (896)
                      ...  +.++        ++.|++                                            .|.+.+.+|+ .+
T Consensus       614 ~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i  692 (1133)
T KOG1943|consen  614 RKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QI  692 (1133)
T ss_pred             hhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HH
Confidence            211  1110        000010                                            1112223344 67


Q ss_pred             HHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcC-CHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh
Q 002658          137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLL  215 (896)
Q Consensus       137 R~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eq-nk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLL  215 (896)
                      |+++.++++.++.-+....  +...  ..++...+..+.+. +..+-.|..+++..+.-.+  ...++-+.||-.++..+
T Consensus       693 ~~~av~av~~l~s~y~~~d--~~~~--~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~--i~~~~q~~lc~~~l~~~  766 (1133)
T KOG1943|consen  693 RDAAVSAVSDLVSTYVKAD--EGEE--APLITRYLSRLTKCSEERIRRGLILALGVLPSEL--IHRHLQEKLCKLVLELL  766 (1133)
T ss_pred             HHHHHHHHHHHHHHHHhcC--chhh--hHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHh--hchHHHHHHHHHHhccC
Confidence            8888999999888775521  1111  13444555555444 5556666666655544321  11245667777777777


Q ss_pred             cCC-chhhHHHHHHHHHHHHh-cc-ccC----cccHHHHHHHHHHhhCCC--C--HHHHHHHHHHHHHHHHhcc--hHHH
Q 002658          216 SNQ-NFMAKASLLPVVGSLSQ-VG-AIA----PQSLEPLLQSIHECLGST--D--WATRKAAADALSALALHSS--NLVI  282 (896)
Q Consensus       216 ks~-s~kaK~alL~aIgSLA~-vg-a~~----~pyle~lLp~L~e~Lsdd--D--W~lRKaA~EaLgsLA~avG--e~L~  282 (896)
                      -.. ...+|...+.++..+.. ++ ..+    ..+++.++.+|-++..|.  |  -=+|++|+-+|..+.....  ++|.
T Consensus       767 p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld  846 (1133)
T KOG1943|consen  767 PSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLD  846 (1133)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCccccc
Confidence            666 66677777777776643 33 334    444555555555555543  2  3389999999999887765  6777


Q ss_pred             hh-HHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002658          283 DG-ATSTLTVLEACRFDKIKPVRDSMNEALQL  313 (896)
Q Consensus       283 Py-~~~~I~~LE~~RfDKvKpVRDaA~eALe~  313 (896)
                      ++ +.+|+.+|-..-.||++-.|+.+..++..
T Consensus       847 ~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~q  878 (1133)
T KOG1943|consen  847 EDSINRIIRYFVQQAVEKIDRLRELAASALNQ  878 (1133)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence            77 57778889999999999999985555443

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=96.92  E-value=0.04  Score=64.20  Aligned_cols=203  Identities=14%  Similarity=0.155  Sum_probs=118.7

Q ss_pred             CCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHH
Q 002658           90 DPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS-DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK  168 (896)
Q Consensus        90 s~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDp-Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~  168 (896)
                      .++..+=|..++.+.++-+.........+++++..+....++| +|..-+-+-++||.+.+...+...+.....-..++|
T Consensus        41 ~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P  120 (435)
T PF03378_consen   41 AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP  120 (435)
T ss_dssp             TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence            3444444445555444444433333344555555555555665 589999999999999999754221112234445555


Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHH-HHhcCCchhhHHHHHHHHHHHHhcc-ccC--ccc
Q 002658          169 PLFEAMMEQNKGVQSGAAMCMAKMVECAS-DPPVVAFQKLCARIC-KLLSNQNFMAKASLLPVVGSLSQVG-AIA--PQS  243 (896)
Q Consensus       169 pL~eaL~Eqnk~VQ~gAasALAkIIE~a~-d~~~~yL~~LlPRL~-kLLks~s~kaK~alL~aIgSLA~vg-a~~--~py  243 (896)
                      ++...|.+.-....--++.=|+-++|..+ ..+.+....|+|.|+ ..+=...--+ +++..++.+++..+ ..+  ..+
T Consensus       121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~  199 (435)
T PF03378_consen  121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQ  199 (435)
T ss_dssp             HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhh
Confidence            65555555545566667888899999876 333333334444443 2221111111 47777888887544 322  578


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhh
Q 002658          244 LEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEAC  295 (896)
Q Consensus       244 le~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~~~~I~~LE~~  295 (896)
                      ++.++...+.++.+..-+  -.+.+.|.+|...++ +.+.||+..++.+|-..
T Consensus       200 l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~R  250 (435)
T PF03378_consen  200 LEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTR  250 (435)
T ss_dssp             CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence            889998888888874322  357899999999999 89999999999876533

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.91  E-value=0.018  Score=68.81  Aligned_cols=219  Identities=17%  Similarity=0.186  Sum_probs=138.0

Q ss_pred             HHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc--cccC
Q 002658           81 LNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG--KEEN  158 (896)
Q Consensus        81 Ls~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~--~~e~  158 (896)
                      ..+|.....+.++.||.+|+..|=++.+|..=.     .-+....++.|+|.+..||.+|...+..++..+.-+  ....
T Consensus       200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~-----~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~  274 (823)
T KOG2259|consen  200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLS-----KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE  274 (823)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHhhccccccc-----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence            333555556778889999888887777744211     113456788899999999999999988888877322  1112


Q ss_pred             CchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHH-HHHHH--------------------------
Q 002658          159 NGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQK-LCARI--------------------------  211 (896)
Q Consensus       159 ~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~-LlPRL--------------------------  211 (896)
                      ........+..+.+++.+-.-.|-.-|+-+|..+.....+.+...|++ ||-++                          
T Consensus       275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~  354 (823)
T KOG2259|consen  275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWN  354 (823)
T ss_pred             hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccc
Confidence            234566777788888866554444445666655554443333333432 44411                          


Q ss_pred             ------------------------HHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHH
Q 002658          212 ------------------------CKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAA  267 (896)
Q Consensus       212 ------------------------~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~  267 (896)
                                              +--|.+.-+.+|.+++..+++++.   ..+.+....+-.|.+.+.|+.-.+|.-|+
T Consensus       355 advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~---ssP~FA~~aldfLvDMfNDE~~~VRL~ai  431 (823)
T KOG2259|consen  355 ADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLAT---SSPGFAVRALDFLVDMFNDEIEVVRLKAI  431 (823)
T ss_pred             ccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHhccHHHHHHHHHH
Confidence                                    111111123456677777777764   34556667788888999999999999999


Q ss_pred             HHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 002658          268 DALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQ  312 (896)
Q Consensus       268 EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe  312 (896)
                      -+|..|+..+- .=..++..+++.|+    |....||+.+.+.|.
T Consensus       432 ~aL~~Is~~l~-i~eeql~~il~~L~----D~s~dvRe~l~elL~  471 (823)
T KOG2259|consen  432 FALTMISVHLA-IREEQLRQILESLE----DRSVDVREALRELLK  471 (823)
T ss_pred             HHHHHHHHHhe-ecHHHHHHHHHHHH----hcCHHHHHHHHHHHH
Confidence            99999888743 11133444444444    777778887655554

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=96.87  E-value=0.011  Score=61.33  Aligned_cols=117  Identities=18%  Similarity=0.163  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh--ccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH---HHhcc
Q 002658          204 FQKLCARICKLLSNQNFMAKASLLPVVGSLSQ--VGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSAL---ALHSS  278 (896)
Q Consensus       204 L~~LlPRL~kLLks~s~kaK~alL~aIgSLA~--vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsL---A~avG  278 (896)
                      ++.++|-|+.-|......-+-.+...+.-+..  .+....|.+..+++.|...|...|.++..+++++|..|   ...+|
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG  115 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG  115 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence            45677888877765433333333333333332  23567899999999999999999999999999999999   88899


Q ss_pred             hHHHhhHHHHHHHHH---hhh--------cCCChhhHHHHHHHHHHHHHhccC
Q 002658          279 NLVIDGATSTLTVLE---ACR--------FDKIKPVRDSMNEALQLWKKIAGK  320 (896)
Q Consensus       279 e~L~Py~~~~I~~LE---~~R--------fDKvKpVRDaA~eALe~WK~la~~  320 (896)
                      +.|.||..+++..+.   +++        +.+.+.++|.+.++|+..-.-+|.
T Consensus       116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~  168 (183)
T PF10274_consen  116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGP  168 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcCh
Confidence            999999998887776   333        245577899999999998887765

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.85  E-value=0.0013  Score=48.74  Aligned_cols=31  Identities=13%  Similarity=0.453  Sum_probs=27.9

Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002658          121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLY  151 (896)
Q Consensus       121 IL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~l  151 (896)
                      |+|.+++.|+|+++.||.+|+.++|.|++++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~   31 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC   31 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence            6899999999999999999999999998763

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.80  E-value=0.14  Score=62.68  Aligned_cols=228  Identities=15%  Similarity=0.134  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHH
Q 002658           57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM  136 (896)
Q Consensus        57 T~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~V  136 (896)
                      ..-.|+-.|=.|.   ++|..+-+++-+.+-+++.++.+||-|+++.--+.+.-++.+    +.+++...+.|.|.+..|
T Consensus       123 vVglAL~alg~i~---s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~----e~f~~~~~~lL~ek~hGV  195 (866)
T KOG1062|consen  123 VVGLALCALGNIC---SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV----EHFVIAFRKLLCEKHHGV  195 (866)
T ss_pred             ehHHHHHHhhccC---CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH----HHhhHHHHHHHhhcCCce
Confidence            3344544444443   687888899999988899999999999999877777665554    344566777888888776


Q ss_pred             HHHHHHHHHHHHHHH---------------------hcc----ccc--C-CchhHhhhHHHHHHHHhcCCHhHHHHHHHH
Q 002658          137 KEACRDSIGSLSKLY---------------------LNG----KEE--N-NGTVVGLFVKPLFEAMMEQNKGVQSGAAMC  188 (896)
Q Consensus       137 R~Ac~~aLG~LA~~l---------------------i~~----~~e--~-~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasA  188 (896)
                      --+....+..++..-                     +..    +.+  + ....++.=+-.|+..|+..+++.-+..+.-
T Consensus       196 L~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~Di  275 (866)
T KOG1062|consen  196 LIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDI  275 (866)
T ss_pred             eeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            655555544444431                     000    000  0 001111112223333444455555555555


Q ss_pred             HHHHHHhcC---CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC----------------cccHHHHHH
Q 002658          189 MAKMVECAS---DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIA----------------PQSLEPLLQ  249 (896)
Q Consensus       189 LAkIIE~a~---d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~----------------~pyle~lLp  249 (896)
                      |+.++.+.+   +.--..|=+-+..+.-+..  +...|..++.+||-+.......                +..+..=-.
T Consensus       276 LaqvatntdsskN~GnAILYE~V~TI~~I~~--~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~  353 (866)
T KOG1062|consen  276 LAQVATNTDSSKNAGNAILYECVRTIMDIRS--NSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRS  353 (866)
T ss_pred             HHHHHhcccccccchhHHHHHHHHHHHhccC--CchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHH
Confidence            555554431   1101122222222222222  2233444555555543211111                112222223


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhh
Q 002658          250 SIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEAC  295 (896)
Q Consensus       250 ~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~  295 (896)
                      .+++||.|.|-.+|+.|+|.+..|...  ..+...+...|.+|+.+
T Consensus       354 tIleCL~DpD~SIkrralELs~~lvn~--~Nv~~mv~eLl~fL~~~  397 (866)
T KOG1062|consen  354 TILECLKDPDVSIKRRALELSYALVNE--SNVRVMVKELLEFLESS  397 (866)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhc
Confidence            588999999999999999999987654  45556678888888877

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.79  E-value=0.17  Score=62.35  Aligned_cols=156  Identities=17%  Similarity=0.188  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHH
Q 002658           40 EMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT  119 (896)
Q Consensus        40 ~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~Lp  119 (896)
                      .|-..|+.... .-|-+..|.----|..+++. .|+..-..++.+...++++++..|-.|++.++.+=      +...++
T Consensus        55 sLf~dViK~~~-trd~ElKrL~ylYl~~yak~-~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~------~~el~~  126 (757)
T COG5096          55 SLFPDVIKNVA-TRDVELKRLLYLYLERYAKL-KPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLR------VKELLG  126 (757)
T ss_pred             HHHHHHHHHHH-hcCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC------hHHHHH
Confidence            33333444344 45666777777777777763 34344345677777788999999999999887653      345677


Q ss_pred             HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhh-hHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC
Q 002658          120 KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGL-FVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD  198 (896)
Q Consensus       120 kIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~-lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d  198 (896)
                      .+++.|.+.|.|+.+.||..|..+|+-|-+.=-+       -.+.. ++..+-+.+.|.+|.|-..|..+|..+.+.   
T Consensus       127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~-------l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e---  196 (757)
T COG5096         127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD-------LYHELGLIDILKELVADSDPIVIANALASLAEIDPE---  196 (757)
T ss_pred             HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh-------hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh---
Confidence            8899999999999999999999998877643210       11223 344455555799999999999999888875   


Q ss_pred             CCchhHHHHHHHHHH
Q 002658          199 PPVVAFQKLCARICK  213 (896)
Q Consensus       199 ~~~~yL~~LlPRL~k  213 (896)
                      ...+|+..++.++-.
T Consensus       197 ~a~~~~~~~~~~i~~  211 (757)
T COG5096         197 LAHGYSLEVILRIPQ  211 (757)
T ss_pred             hhhhHHHHHHHHhhh
Confidence            344666655544443

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.69  E-value=0.097  Score=63.88  Aligned_cols=253  Identities=13%  Similarity=0.115  Sum_probs=161.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhc--------CCCChhhHHHHHH-HHHHHHHHhcccchhhHHHHHHHHHHh
Q 002658           58 HQIAIEDLEKTIQTLSQESLPMLLNCLYESS--------NDPKPAVKKESVR-LLALVCELHSELTSTHVTKIISHIVKR  128 (896)
Q Consensus        58 ~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~--------ss~k~~vRKeAIl-lLG~IAeg~~d~I~P~LpkIL~~Ilrr  128 (896)
                      |-||-.-..-+...++.=..|+++..|....        .+.+...+|.|+. ++|..+--. -.+.++=.-+...++.-
T Consensus       414 RPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l-~~~~dF~~Wl~~~llpE  492 (978)
T KOG1993|consen  414 RPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYEL-SNILDFDKWLQEALLPE  492 (978)
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHhhCHH
Confidence            3345444555555554434777888885543        2334566666554 555554433 33333322223333333


Q ss_pred             hcC--C-ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcC-CHhHHHHHHHHHHHHHHhc---CCCCc
Q 002658          129 LKD--S-DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKMVECA---SDPPV  201 (896)
Q Consensus       129 LkD--p-Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eq-nk~VQ~gAasALAkIIE~a---~d~~~  201 (896)
                      |..  + --.+|.-..|.+|+.++.=      ...+.-+.+...++..|.++ +..|--+++.+|..++++.   ++...
T Consensus       493 l~~~~~~~RiiRRRVa~ilg~Wvsvq------~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFl  566 (978)
T KOG1993|consen  493 LANDHGNSRIIRRRVAWILGQWVSVQ------QKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFL  566 (978)
T ss_pred             hhhcccchhHHHHHHHHHHhhhhhee------chHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhh
Confidence            332  1 2356777777777766622      12345566666777777666 7788899999999999984   66777


Q ss_pred             hhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHH-hccccCcccHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHhc
Q 002658          202 VAFQKLCARICKLLSN-QNFMAKASLLPVVGSLS-QVGAIAPQSLEPLLQSIHECL--GSTDWATRKAAADALSALALHS  277 (896)
Q Consensus       202 ~yL~~LlPRL~kLLks-~s~kaK~alL~aIgSLA-~vga~~~pyle~lLp~L~e~L--sddDW~lRKaA~EaLgsLA~av  277 (896)
                      +|++.+-.-++++|+. ..+.+|..+|+.++.++ .++....||.-.+++.|-..-  ..+..-+|-+.+-+|-.+..++
T Consensus       567 p~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~al  646 (978)
T KOG1993|consen  567 PYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNAL  646 (978)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHh
Confidence            8998888888888875 46778999999999996 466666688877776655542  2245678999999999999999


Q ss_pred             c---hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhccC
Q 002658          278 S---NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (896)
Q Consensus       278 G---e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~~  320 (896)
                      |   ..+-|++=++|++.-.  -....+|- ..-.++++|..+-.-
T Consensus       647 g~qS~~~~~fL~pVIel~~D--~~sP~hv~-L~EDgmeLW~~~L~n  689 (978)
T KOG1993|consen  647 GAQSFEFYPFLYPVIELSTD--PSSPEHVY-LLEDGMELWLTTLMN  689 (978)
T ss_pred             ccCCccchHHHHHHHHHhcC--CCCCceee-hhhhHHHHHHHHHhc
Confidence            9   4566777666665431  11222222 223589999987743

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.1  Score=65.44  Aligned_cols=234  Identities=16%  Similarity=0.158  Sum_probs=149.9

Q ss_pred             hHHHHHHHHHH-HHHcCC--ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh----cCCCChhhHHHHHHHHHHHHHH
Q 002658           37 AMVEMKQKILT-SLSKLA--DRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYES----SNDPKPAVKKESVRLLALVCEL  109 (896)
Q Consensus        37 ~~~~Lk~rll~-~L~KLs--DRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es----~ss~k~~vRKeAIllLG~IAeg  109 (896)
                      +.++..-.++. .|..+.  |...+-.|++.+-+++..+|++...-.+.-+.+-    -.+.-|   .-++++|+.+|. 
T Consensus       334 dv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aW---HgacLaLAELA~-  409 (1133)
T KOG1943|consen  334 DVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAW---HGACLALAELAL-  409 (1133)
T ss_pred             ccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHH---HHHHHHHHHHHh-
Confidence            34444444444 345554  4457889999999999999865533334444331    122223   368888877775 


Q ss_pred             hcccchhhHHHHHHHHHHhhcCCC--------hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH-----hc
Q 002658          110 HSELTSTHVTKIISHIVKRLKDSD--------SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-----ME  176 (896)
Q Consensus       110 ~~d~I~P~LpkIL~~IlrrLkDpD--------s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL-----~E  176 (896)
                      .|=.+..-++.|+|.|++.|.-.+        .+||+|||..+=++++-+ .+      ..+..++..|+.+|     =|
T Consensus       410 rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ray-s~------~~l~p~l~~L~s~LL~~AlFD  482 (1133)
T KOG1943|consen  410 RGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAY-SP------SDLKPVLQSLASALLIVALFD  482 (1133)
T ss_pred             cCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcC-Ch------hhhhHHHHHHHHHHHHHHhcC
Confidence            333344568999999999987654        589999999999999988 22      11233444444444     36


Q ss_pred             CCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh---hHHHHHHHHHHHHhccccCcccHHHHHHHHHH
Q 002658          177 QNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM---AKASLLPVVGSLSQVGAIAPQSLEPLLQSIHE  253 (896)
Q Consensus       177 qnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~k---aK~alL~aIgSLA~vga~~~pyle~lLp~L~e  253 (896)
                      ..-++--||+.||...+---++.+         .=+.++.+-+|-   .+..++..|.-.+   +.++.|.+.++..|+-
T Consensus       483 revncRRAAsAAlqE~VGR~~n~p---------~Gi~Lis~~dy~sV~~rsNcy~~l~~~i---a~~~~y~~~~f~~L~t  550 (1133)
T KOG1943|consen  483 REVNCRRAASAALQENVGRQGNFP---------HGISLISTIDYFSVTNRSNCYLDLCVSI---AEFSGYREPVFNHLLT  550 (1133)
T ss_pred             chhhHhHHHHHHHHHHhccCCCCC---------CchhhhhhcchhhhhhhhhHHHHHhHHH---HhhhhHHHHHHHHHHh
Confidence            777888899988887775432221         002223333332   2334444443332   4677777777766655


Q ss_pred             h-hCCCCHHHHHHHHHHHHHHHHhcchHHH-hhHHHHHHHHH
Q 002658          254 C-LGSTDWATRKAAADALSALALHSSNLVI-DGATSTLTVLE  293 (896)
Q Consensus       254 ~-LsddDW~lRKaA~EaLgsLA~avGe~L~-Py~~~~I~~LE  293 (896)
                      . +.+=|..+|-.|+.+|..|....++.+. -|+.++|....
T Consensus       551 ~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~l  592 (1133)
T KOG1943|consen  551 KKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTL  592 (1133)
T ss_pred             cccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhc
Confidence            4 6676888999999999999999998877 44677777654

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=96.62  E-value=0.027  Score=63.15  Aligned_cols=260  Identities=15%  Similarity=0.125  Sum_probs=160.5

Q ss_pred             CChhHHHHHHHHHHHHHhc--------CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc-chhhHHHHHH
Q 002658           53 ADRDTHQIAIEDLEKTIQT--------LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-TSTHVTKIIS  123 (896)
Q Consensus        53 sDRDT~k~Aa~eLD~La~~--------L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~-I~P~LpkIL~  123 (896)
                      +..|.+.+|+=+|-.++..        |....+.++|..|.+.-.+ -..+ +-+--.|.++|+|-... --..+.+.+|
T Consensus       169 ~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~-isml-Rn~TWtLSNlcRGknP~P~w~~isqalp  246 (526)
T COG5064         169 TEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIH-ISML-RNATWTLSNLCRGKNPPPDWSNISQALP  246 (526)
T ss_pred             chHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccch-HHHH-HHhHHHHHHhhCCCCCCCchHHHHHHHH
Confidence            3456777777777666642        1233477888888743221 1233 34556678888875433 2446888899


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHh-hhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCch
Q 002658          124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVG-LFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVV  202 (896)
Q Consensus       124 ~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~-~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~  202 (896)
                      .+.+.+---|+.|-.-|||+|.-|+.---..    ...++. -+.+.|+++|...+..+|.-|.-+...++-+.+++..-
T Consensus       247 iL~KLiys~D~evlvDA~WAiSYlsDg~~E~----i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqv  322 (526)
T COG5064         247 ILAKLIYSRDPEVLVDACWAISYLSDGPNEK----IQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQV  322 (526)
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHhccCcHHH----HHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceeh
Confidence            9999998889989889999998766433111    111121 14467999998888999999998888888766554433


Q ss_pred             hHH-HHHHHHHHHhcCCchhhH-HHHHHHHHHHHhcc--ccCcccHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002658          203 AFQ-KLCARICKLLSNQNFMAK-ASLLPVVGSLSQVG--AIAPQSLE-PLLQSIHECLGSTDWATRKAAADALSALALHS  277 (896)
Q Consensus       203 yL~-~LlPRL~kLLks~s~kaK-~alL~aIgSLA~vg--a~~~pyle-~lLp~L~e~LsddDW~lRKaA~EaLgsLA~av  277 (896)
                      .++ -.++-|-.+|.++.-.+| ++|-.. +-+ .+|  ......++ .++|.|...|+.-+..+||.||=++......-
T Consensus       323 iI~~G~L~a~~~lLs~~ke~irKEaCWTi-SNI-TAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg  400 (526)
T COG5064         323 IINCGALKAFRSLLSSPKENIRKEACWTI-SNI-TAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGG  400 (526)
T ss_pred             heecccHHHHHHHhcChhhhhhhhhheee-ccc-ccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            332 134555666888765544 444332 221 222  22222233 46799999999999999999999988765543


Q ss_pred             c--hHHHhhH--HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhccC
Q 002658          278 S--NLVIDGA--TSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (896)
Q Consensus       278 G--e~L~Py~--~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~~  320 (896)
                      -  +.+.-|+  +.+|+.|+...--.+-.+-++++.+++-...+...
T Consensus       401 ~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~  447 (526)
T COG5064         401 LNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQ  447 (526)
T ss_pred             cCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhH
Confidence            2  3333353  55677665332221222447877777776665533

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.60  E-value=0.13  Score=62.87  Aligned_cols=209  Identities=17%  Similarity=0.226  Sum_probs=115.6

Q ss_pred             HHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCc
Q 002658           81 LNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNG  160 (896)
Q Consensus        81 Ls~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~  160 (896)
                      ++.++..+.++++.+|-.|+++|.-|   .--.|   -|-|+-.|.+...|+.+.||..|+.+|--|=+.=        .
T Consensus       110 IntfQk~L~DpN~LiRasALRvlSsI---Rvp~I---aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd--------~  175 (968)
T KOG1060|consen  110 INTFQKALKDPNQLIRASALRVLSSI---RVPMI---APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD--------P  175 (968)
T ss_pred             HHHHHhhhcCCcHHHHHHHHHHHHhc---chhhH---HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC--------h
Confidence            34455555667777777777666322   11112   2344667777777888888887777766443221        1


Q ss_pred             hhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc---
Q 002658          161 TVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG---  237 (896)
Q Consensus       161 ~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg---  237 (896)
                      +..++++..+=..|.+..+-|-.+|.+|+..+|-+--++    +++=..|||.+|.+-..=-+..+|..+---|.-+   
T Consensus       176 e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldL----IHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~  251 (968)
T KOG1060|consen  176 EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDL----IHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPD  251 (968)
T ss_pred             hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHH----hhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCC
Confidence            334566666666678899999999999988888542223    3333444455554322212223333333222111   


Q ss_pred             c---------------------------cCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH
Q 002658          238 A---------------------------IAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLT  290 (896)
Q Consensus       238 a---------------------------~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~  290 (896)
                      .                           ...+=+..+++++..+|.+.+..+=-++|+++..||--..  ..-.+..++.
T Consensus       252 P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~--~~~i~kaLvr  329 (968)
T KOG1060|consen  252 PTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ--VTKIAKALVR  329 (968)
T ss_pred             ccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH--HHHHHHHHHH
Confidence            0                           0122345667777777777777777788888777765432  1111233333


Q ss_pred             HHHhhhcCCChhhHHHHHHHHHHH
Q 002658          291 VLEACRFDKIKPVRDSMNEALQLW  314 (896)
Q Consensus       291 ~LE~~RfDKvKpVRDaA~eALe~W  314 (896)
                      .|.     ..+.|+.++++.+.+.
T Consensus       330 LLr-----s~~~vqyvvL~nIa~~  348 (968)
T KOG1060|consen  330 LLR-----SNREVQYVVLQNIATI  348 (968)
T ss_pred             HHh-----cCCcchhhhHHHHHHH
Confidence            222     3344666666655544

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.33  Score=59.20  Aligned_cols=168  Identities=11%  Similarity=0.106  Sum_probs=116.8

Q ss_pred             CHHHHHHHHhhhc-------CC-CChhhHHHHHHHHHHHHHHhcccc---hhhHH-HHHHHHHHhhcCCChHHHHHHHHH
Q 002658           76 SLPMLLNCLYESS-------ND-PKPAVKKESVRLLALVCELHSELT---STHVT-KIISHIVKRLKDSDSGMKEACRDS  143 (896)
Q Consensus        76 ~Lp~fLs~L~es~-------ss-~k~~vRKeAIllLG~IAeg~~d~I---~P~Lp-kIL~~IlrrLkDpDs~VR~Ac~~a  143 (896)
                      .|.++|+++.+.+       .+ .++...+.|+++|+.+.. .-...   +..+. -|++++++.++++---++.-+|+.
T Consensus       405 TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s-~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~  483 (970)
T COG5656         405 TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS-FITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEF  483 (970)
T ss_pred             hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH-HhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHH
Confidence            4777777776654       12 345566669999999988 33332   33333 357889999999999999999999


Q ss_pred             HHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHHHhcCCchh
Q 002658          144 IGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA--SDPPVVAFQKLCARICKLLSNQNFM  221 (896)
Q Consensus       144 LG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a--~d~~~~yL~~LlPRL~kLLks~s~k  221 (896)
                      +..+.....+.      ...-+++...+.+|..+.-.|+.-||.||..++-+.  .+...+.++.+|.+|+.+-+.-...
T Consensus       484 is~~eeDfkd~------~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD  557 (970)
T COG5656         484 ISTIEEDFKDN------GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEID  557 (970)
T ss_pred             HHHHHHhcccc------hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccch
Confidence            99997777433      346667788888888888899999999999999764  3444567888899988887753333


Q ss_pred             hHHHHHHH-HHHHHhccccCcccHHHHHHHHHH
Q 002658          222 AKASLLPV-VGSLSQVGAIAPQSLEPLLQSIHE  253 (896)
Q Consensus       222 aK~alL~a-IgSLA~vga~~~pyle~lLp~L~e  253 (896)
                      +=..+++. ++.++   ....||...++..|.+
T Consensus       558 ~LS~vMe~fVe~fs---eELspfa~eLa~~Lv~  587 (970)
T COG5656         558 PLSMVMESFVEYFS---EELSPFAPELAGSLVR  587 (970)
T ss_pred             HHHHHHHHHHHHhH---HhhchhHHHHHHHHHH
Confidence            22233322 22222   3456777777766655

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.43  E-value=0.12  Score=63.09  Aligned_cols=220  Identities=18%  Similarity=0.249  Sum_probs=149.7

Q ss_pred             chhhhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCC-CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH
Q 002658           31 SLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLS-QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCEL  109 (896)
Q Consensus        31 ~~s~~~~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~-pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg  109 (896)
                      ++.++.+.+++|.++...-.     +.++-|+   .+++..+. ..++..+++-+...++..+-..+|-+.+-+.+-+.+
T Consensus         8 ~~~~k~ei~elks~l~s~~~-----~kr~~a~---kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~   79 (734)
T KOG1061|consen    8 STDKKGEIPELKSQLNSQSK-----EKRKDAV---KKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKG   79 (734)
T ss_pred             CcchhhhchHHHHHhhhhhh-----hhHHHHH---HHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhcc
Confidence            44558899999999933333     5566655   45555442 235556666666566667788999999999999999


Q ss_pred             hcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHH
Q 002658          110 HSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCM  189 (896)
Q Consensus       110 ~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasAL  189 (896)
                      +++.-.-    -+.++++-..|+++.+|..|..++|.+-          ....+..++.||..++.+.++.|+..|+.|.
T Consensus        80 ~P~~a~~----avnt~~kD~~d~np~iR~lAlrtm~~l~----------v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~v  145 (734)
T KOG1061|consen   80 KPDLAIL----AVNTFLKDCEDPNPLIRALALRTMGCLR----------VDKITEYLCDPLLKCLKDDDPYVRKTAAVCV  145 (734)
T ss_pred             CchHHHh----hhhhhhccCCCCCHHHHHHHhhceeeEe----------ehHHHHHHHHHHHHhccCCChhHHHHHHHHH
Confidence            9876221    1678999999999999999888776431          2255777899999999999999999999999


Q ss_pred             HHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccc--cCcccHHHHHHHHHHhhCC-CCHHHHHHH
Q 002658          190 AKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGA--IAPQSLEPLLQSIHECLGS-TDWATRKAA  266 (896)
Q Consensus       190 AkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga--~~~pyle~lLp~L~e~Lsd-dDW~lRKaA  266 (896)
                      +++-...++...  -.-+++.|-.++.+.+..+-+.++.++.-+.....  ........++..+++.+.. +.|..    
T Consensus       146 akl~~~~~~~~~--~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~q----  219 (734)
T KOG1061|consen  146 AKLFDIDPDLVE--DSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQ----  219 (734)
T ss_pred             HHhhcCChhhcc--ccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhH----
Confidence            998764332211  12367777778888888887888888877753221  1111122333334444433 45764    


Q ss_pred             HHHHHHHHHhcc
Q 002658          267 ADALSALALHSS  278 (896)
Q Consensus       267 ~EaLgsLA~avG  278 (896)
                      +..|..++..++
T Consensus       220 i~IL~~l~~y~p  231 (734)
T KOG1061|consen  220 IFILDCLAEYVP  231 (734)
T ss_pred             HHHHHHHHhcCC
Confidence            566777777777

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.39  E-value=0.0059  Score=45.27  Aligned_cols=30  Identities=37%  Similarity=0.439  Sum_probs=26.9

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002658          247 LLQSIHECLGSTDWATRKAAADALSALALH  276 (896)
Q Consensus       247 lLp~L~e~LsddDW~lRKaA~EaLgsLA~a  276 (896)
                      +||.+++.+.|++|.+|.+|+.+|+.|+..
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            689999999999999999999999999864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=96.35  E-value=0.027  Score=58.57  Aligned_cols=116  Identities=12%  Similarity=0.124  Sum_probs=91.4

Q ss_pred             HhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh-cCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH----hcc
Q 002658          163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC-ASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS----QVG  237 (896)
Q Consensus       163 ~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~-a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA----~vg  237 (896)
                      +..+|+.+++.|.|....-.--|..++..+++. .++.+.++|++|++-|-..|++.+..+..++|.+|..++    .+|
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG  115 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG  115 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence            567999999999887666666677778888887 777888999999999999999999999999999999883    356


Q ss_pred             ccCcccHHHHHHHHHHhhCCC-----------CHHHHHHHHHHHHHHHHhcc
Q 002658          238 AIAPQSLEPLLQSIHECLGST-----------DWATRKAAADALSALALHSS  278 (896)
Q Consensus       238 a~~~pyle~lLp~L~e~Lsdd-----------DW~lRKaA~EaLgsLA~avG  278 (896)
                      ....||+..++|.+--+....           ...++-...|+|..+-..-|
T Consensus       116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG  167 (183)
T PF10274_consen  116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGG  167 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcC
Confidence            778999999999987554322           24455556666666666666

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.33  E-value=0.08  Score=65.10  Aligned_cols=152  Identities=17%  Similarity=0.248  Sum_probs=113.3

Q ss_pred             HHHHHhcC-CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHH
Q 002658           65 LEKTIQTL-SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDS  143 (896)
Q Consensus        65 LD~La~~L-~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~a  143 (896)
                      +.+++..+ -.+.++-|++.+.....+.+...||-+-+=|-..++.+++...    --+.++.+-|+||++.+|..|..+
T Consensus        40 mK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l----LavNti~kDl~d~N~~iR~~AlR~  115 (757)
T COG5096          40 MKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL----LAVNTIQKDLQDPNEEIRGFALRT  115 (757)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHhhccCCCHHHHHHHHHH
Confidence            34455443 3446888988888777688899999999999999999985421    127789999999999999999988


Q ss_pred             HHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHH-HHHHHHHHhcCCchhh
Q 002658          144 IGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQK-LCARICKLLSNQNFMA  222 (896)
Q Consensus       144 LG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~-LlPRL~kLLks~s~ka  222 (896)
                      ++.|=          ..+.+..+++|+.+++.+.++.|-..|+.|+.++-+-.++.   |.+. ++.-+..++.+.+..+
T Consensus       116 ls~l~----------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~~~~g~~~~l~~l~~D~dP~V  182 (757)
T COG5096         116 LSLLR----------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL---YHELGLIDILKELVADSDPIV  182 (757)
T ss_pred             HHhcC----------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh---hhcccHHHHHHHHhhCCCchH
Confidence            87442          13568889999999999999999999999999998754332   2222 4555566666667776


Q ss_pred             HHHHHHHHHHH
Q 002658          223 KASLLPVVGSL  233 (896)
Q Consensus       223 K~alL~aIgSL  233 (896)
                      .++++.++..+
T Consensus       183 i~nAl~sl~~i  193 (757)
T COG5096         183 IANALASLAEI  193 (757)
T ss_pred             HHHHHHHHHHh
Confidence            66655554443

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.28  E-value=0.4  Score=59.28  Aligned_cols=223  Identities=12%  Similarity=0.134  Sum_probs=151.9

Q ss_pred             HHHHHHcCCChh--HHHHHHHHHHHHHhcCCCCC---HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHH
Q 002658           45 ILTSLSKLADRD--THQIAIEDLEKTIQTLSQES---LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT  119 (896)
Q Consensus        45 ll~~L~KLsDRD--T~k~Aa~eLD~La~~L~pd~---Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~Lp  119 (896)
                      +-..+..+.|..  ++..|+.+|..+++.=.+..   -..+|..+.++..+.++++-=.||..+..+|+.+++.+.|-| 
T Consensus       729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL-  807 (982)
T KOG4653|consen  729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDL-  807 (982)
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHH-
Confidence            444556665554  78899999999998432222   345577778888899999999999999999999888776544 


Q ss_pred             HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH----hcCCHhHHHHHHHHHHHHHHh
Q 002658          120 KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM----MEQNKGVQSGAAMCMAKMVEC  195 (896)
Q Consensus       120 kIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL----~Eqnk~VQ~gAasALAkIIE~  195 (896)
                        ..+....=+-+.+.-|--.+++++.++...   +     +.+..+..+|+...    .|++-..-+.++..|..+|.-
T Consensus       808 --~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~---G-----el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~  877 (982)
T KOG4653|consen  808 --SEEYLSEKKKLQTDYRLKVGEAILKVAQAL---G-----ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQL  877 (982)
T ss_pred             --HHHHHhcccCCCccceehHHHHHHHHHHHh---c-----cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence              444444433343445555678888888887   2     34555555555554    456555678899999999998


Q ss_pred             cCCCCchhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHH-hccccCcc----cHHHHHHHHHHhh-CCCCHHHHHHHHH
Q 002658          196 ASDPPVVAFQKLCARICKLLSN-QNFMAKASLLPVVGSLS-QVGAIAPQ----SLEPLLQSIHECL-GSTDWATRKAAAD  268 (896)
Q Consensus       196 a~d~~~~yL~~LlPRL~kLLks-~s~kaK~alL~aIgSLA-~vga~~~p----yle~lLp~L~e~L-sddDW~lRKaA~E  268 (896)
                      ..-.....+..+...++.+... ..+.+|-+++.+|..+- +.|....|    |+-.+...+.... .++|-.+|..||.
T Consensus       878 ~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql  957 (982)
T KOG4653|consen  878 LAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQL  957 (982)
T ss_pred             HhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            6555556888888888888875 57788989999988875 34533333    2223333333332 3456678888888


Q ss_pred             HHHHHHHhcc
Q 002658          269 ALSALALHSS  278 (896)
Q Consensus       269 aLgsLA~avG  278 (896)
                      ||-.|-.+..
T Consensus       958 ~leei~a~l~  967 (982)
T KOG4653|consen  958 CLEEIQAALE  967 (982)
T ss_pred             HHHHHHHHHH
Confidence            8877766655

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=96.26  E-value=0.11  Score=52.74  Aligned_cols=136  Identities=14%  Similarity=0.128  Sum_probs=96.7

Q ss_pred             CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHh-cccchhhHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhc
Q 002658           76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELH-SELTSTHVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLN  153 (896)
Q Consensus        76 ~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~-~d~I~P~LpkIL~~IlrrLkDpDs-~VR~Ac~~aLG~LA~~li~  153 (896)
                      .+.-+...|..-.++..+..|-.++.+++++++-| ++.+..|-..-+..++..|+.+++ .+..+|+.+++.|...+.+
T Consensus        22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~  101 (165)
T PF08167_consen   22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG  101 (165)
T ss_pred             HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            35666666666677888999999999999999998 577777778888888888888775 7799999999999998844


Q ss_pred             cc-c--cCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 002658          154 GK-E--ENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICK  213 (896)
Q Consensus       154 ~~-~--e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~k  213 (896)
                      -. .  +......+.++..|+..+.+  ..+...+..+|..++..-+....++..++-..+..
T Consensus       102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~  162 (165)
T PF08167_consen  102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLS  162 (165)
T ss_pred             CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHH
Confidence            21 0  00113355555555555543  56667788888888877666666665555444443

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=96.26  E-value=0.075  Score=57.85  Aligned_cols=184  Identities=15%  Similarity=0.198  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhc-CCCCCHHH--HHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcc--
Q 002658           38 MVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQT-LSQESLPM--LLNCLYESSNDPKPAVKKESVRLLALVCELHSE--  112 (896)
Q Consensus        38 ~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~-L~pd~Lp~--fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d--  112 (896)
                      ..+| ++++..|....|...+..|+-.|-..+.. ...+.+.-  -++.|...++++++.+|..|+.+|.+++.....  
T Consensus        11 ~~~l-~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~   89 (254)
T PF04826_consen   11 AQEL-QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE   89 (254)
T ss_pred             HHHH-HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence            3445 78888888889999999999888876642 11111222  255566666788999999999999988776553  


Q ss_pred             cchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 002658          113 LTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM  192 (896)
Q Consensus       113 ~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkI  192 (896)
                      .+..|+++|+..++..  .-++.++.++...|+.|+  +...    ....+...++.|+..|...+..+|.-+.-+|..+
T Consensus        90 ~Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLt--v~~~----~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   90 QIKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLT--VTND----YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             HHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccC--CCcc----hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            3677888888776653  247788888888888775  2111    1244666888889888888888988888888888


Q ss_pred             HHhcCCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 002658          193 VECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSL  233 (896)
Q Consensus       193 IE~a~d~~~~yL~-~LlPRL~kLLks~s~kaK~alL~aIgSL  233 (896)
                      -++. +...++|. +.+..|+.+|+...  .+..++.+|--+
T Consensus       162 S~np-~~~~~Ll~~q~~~~~~~Lf~~~~--~~~~l~~~l~~~  200 (254)
T PF04826_consen  162 SENP-DMTRELLSAQVLSSFLSLFNSSE--SKENLLRVLTFF  200 (254)
T ss_pred             ccCH-HHHHHHHhccchhHHHHHHccCC--ccHHHHHHHHHH
Confidence            7752 11112222 46678888887542  234444444433

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.18  E-value=0.051  Score=68.50  Aligned_cols=168  Identities=17%  Similarity=0.200  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHhcc-cccCCchhHhhhHHHHHHHHh----cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 002658          140 CRDSIGSLSKLYLNG-KEENNGTVVGLFVKPLFEAMM----EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKL  214 (896)
Q Consensus       140 c~~aLG~LA~~li~~-~~e~~~~~~~~lL~pL~eaL~----Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kL  214 (896)
                      +-+.+.-+...+.+. -.-+-...+..|+|.+.+.+.    -++|..|.+|..||.+++=    ....|...=+|-|+.+
T Consensus       893 seDd~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~----iSa~fces~l~llfti  968 (1251)
T KOG0414|consen  893 SEDDLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC----ISAEFCESHLPLLFTI  968 (1251)
T ss_pred             cchhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHH
Confidence            344455555555331 111114667788888888883    4589999999999999873    1235677778889999


Q ss_pred             hc-CCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHH
Q 002658          215 LS-NQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLE  293 (896)
Q Consensus       215 Lk-s~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE  293 (896)
                      +. +|+..+|..++-++|-++-   .|+..++..-+.|...|.|++..+||.|.-+|..|-..-==++.-|+    .-|-
T Consensus       969 meksp~p~IRsN~VvalgDlav---~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql----~eMA 1041 (1251)
T KOG0414|consen  969 MEKSPSPRIRSNLVVALGDLAV---RFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQL----SEMA 1041 (1251)
T ss_pred             HhcCCCceeeecchheccchhh---hcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccH----HHHH
Confidence            96 8999999988877777753   57888899999999999999999999999999876543322222232    2334


Q ss_pred             hhhcCCChhhHHHHHHHHHHHHHhccCC
Q 002658          294 ACRFDKIKPVRDSMNEALQLWKKIAGKV  321 (896)
Q Consensus       294 ~~RfDKvKpVRDaA~eALe~WK~la~~~  321 (896)
                      -|--|.+..+|+.   |=.|+++++..+
T Consensus      1042 ~cl~D~~~~Isdl---Ak~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1042 LCLEDPNAEISDL---AKSFFKELSSKG 1066 (1251)
T ss_pred             HHhcCCcHHHHHH---HHHHHHHhhhcc
Confidence            5556999989988   788999999664

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=96.07  E-value=1.2  Score=55.64  Aligned_cols=215  Identities=16%  Similarity=0.135  Sum_probs=141.0

Q ss_pred             HHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002658           77 LPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK  155 (896)
Q Consensus        77 Lp~fLs~L~es~-ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~  155 (896)
                      +..||....... -+..+++|-.+++++.-.+  -..-+.|.+|.|+-.|+....+....|-....++|...+..=  +.
T Consensus       488 ~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~d--pe  563 (1005)
T KOG2274|consen  488 LQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLD--PE  563 (1005)
T ss_pred             HHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccC--hh
Confidence            444444444332 4566778888888775444  224479999999999999999999999999998888776654  22


Q ss_pred             ccCCchhHhhhHHHHHHHH--hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh----hHHHHHHH
Q 002658          156 EENNGTVVGLFVKPLFEAM--MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM----AKASLLPV  229 (896)
Q Consensus       156 ~e~~~~~~~~lL~pL~eaL--~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~k----aK~alL~a  229 (896)
                      +.  ...-..++|-++...  ...+|.|-.-+--|+.++++.+.. -.++...++|-|+.+|+.+.-+    .-..+++.
T Consensus       564 f~--as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~-~g~m~e~~iPslisil~~~~~~~~~~l~~~aidv  640 (1005)
T KOG2274|consen  564 FA--ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAAN-YGPMQERLIPSLISVLQLNADKAPAGLCAIAIDV  640 (1005)
T ss_pred             hh--hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHcCcccccCchhhHHHHHH
Confidence            11  122222333333333  245666666688888888886432 2367888999999999987633    34578888


Q ss_pred             HHHHHhcc--ccCcccHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHHhcchHHHhh-------HHHHHHHHHhhhcCC
Q 002658          230 VGSLSQVG--AIAPQSLEPLLQSIHEC-LGSTDWATRKAAADALSALALHSSNLVIDG-------ATSTLTVLEACRFDK  299 (896)
Q Consensus       230 IgSLA~vg--a~~~pyle~lLp~L~e~-LsddDW~lRKaA~EaLgsLA~avGe~L~Py-------~~~~I~~LE~~RfDK  299 (896)
                      |..+...+  ....-.+..+.|++.+| |.++|-.+--.+-|||.++.....+.+..+       +..+|+++. ..+|+
T Consensus       641 Lttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~s-qLLdp  719 (1005)
T KOG2274|consen  641 LTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLS-QLLDP  719 (1005)
T ss_pred             HHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHH-HHcCC
Confidence            88887644  22233444556777776 566788899999999999887765544433       225555554 44443

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=96.02  E-value=0.088  Score=57.51  Aligned_cols=201  Identities=18%  Similarity=0.245  Sum_probs=107.4

Q ss_pred             CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002658           76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK  155 (896)
Q Consensus        76 ~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~  155 (896)
                      .++.+..-+.  +.++.|.+|.+|..+||.+..          +.+++++-+-.+||...||..|--++.++-..- .  
T Consensus        68 Av~~l~~vl~--desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~-~--  132 (289)
T KOG0567|consen   68 AVPVLVEVLL--DESQEPMVRHEAAEALGAIGD----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKD-I--  132 (289)
T ss_pred             hhHHHHHHhc--ccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhh-c--
Confidence            3655555555  345679999999999998762          223444455558999999999888887764322 1  


Q ss_pred             ccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 002658          156 EENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ  235 (896)
Q Consensus       156 ~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~  235 (896)
                      .+   .. ..  ...+.. .++.+..-.....-|...+=   +.-.+    +..|-..+|.=.+.....++...+-++..
T Consensus       133 ~~---~~-~~--~~p~~S-vdPa~p~~~ssv~~lr~~ll---d~t~~----l~~Ry~amF~LRn~g~EeaI~al~~~l~~  198 (289)
T KOG0567|consen  133 ID---KI-AN--SSPYIS-VDPAPPANLSSVHELRAELL---DETKP----LFERYRAMFYLRNIGTEEAINALIDGLAD  198 (289)
T ss_pred             cc---cc-cc--cCcccc-CCCCCccccccHHHHHHHHH---hcchh----HHHHHhhhhHhhccCcHHHHHHHHHhccc
Confidence            00   00 00  000011 23333311111222222221   11111    22222222221111112222222222210


Q ss_pred             ccccCccc---------HHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhH
Q 002658          236 VGAIAPQS---------LEPLLQSIHECLGS--TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVR  304 (896)
Q Consensus       236 vga~~~py---------le~lLp~L~e~Lsd--dDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVR  304 (896)
                      -.+.|..-         -+..+|.|.+.|.+  +...+|--|+++||.||.          +.|+++|...--|..+-||
T Consensus       199 ~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~  268 (289)
T KOG0567|consen  199 DSALFRHEVAFVFGQLQSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVR  268 (289)
T ss_pred             chHHHHHHHHHHHhhccchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHH
Confidence            00112100         12347788887766  578899999999999987          6899999999999999899


Q ss_pred             HHHHHHHHHHH
Q 002658          305 DSMNEALQLWK  315 (896)
Q Consensus       305 DaA~eALe~WK  315 (896)
                      +...-||+...
T Consensus       269 esc~valdm~e  279 (289)
T KOG0567|consen  269 ESCEVALDMLE  279 (289)
T ss_pred             HHHHHHHHHHH
Confidence            87777776654

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=95.95  E-value=0.35  Score=57.53  Aligned_cols=203  Identities=17%  Similarity=0.173  Sum_probs=128.4

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002658           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT-STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK  155 (896)
Q Consensus        77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I-~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~  155 (896)
                      +..+-++|..-..+.--.+--++-+++-.+++   +.+ ..++...++.+...|+-+....|-+|..+|.+|+....+  
T Consensus       262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~---~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~--  336 (898)
T COG5240         262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSE---ENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ--  336 (898)
T ss_pred             HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHH---hccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc--
Confidence            55666666655555444455555555544444   344 446778888888899999999999999999999988832  


Q ss_pred             ccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 002658          156 EENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS  234 (896)
Q Consensus       156 ~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA  234 (896)
                             ...++.+=++.| .+.|+.+-   .+|+..++..-.   .+-++.|+-.+..++.+-+--.|-.++++|.++.
T Consensus       337 -------kv~vcN~evEsLIsd~Nr~Is---tyAITtLLKTGt---~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLs  403 (898)
T COG5240         337 -------KVSVCNKEVESLISDENRTIS---TYAITTLLKTGT---EETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLS  403 (898)
T ss_pred             -------eeeecChhHHHHhhcccccch---HHHHHHHHHcCc---hhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHH
Confidence                   223455555555 56677664   455555554322   2345556655555555432223447788888885


Q ss_pred             hccccCcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCC
Q 002658          235 QVGAIAPQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKI  300 (896)
Q Consensus       235 ~vga~~~pyle~lLp~L~e~Lsd-dDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKv  300 (896)
                      -   .|+.--..++..|...|.+ ....-++.++|+|..+....|+-=.--+..+-.++|.|.|.++
T Consensus       404 l---~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I  467 (898)
T COG5240         404 L---LFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQI  467 (898)
T ss_pred             h---hCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHH
Confidence            3   4555555666666665544 4678888999999988888874322233444455566666655

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.94  E-value=0.06  Score=54.55  Aligned_cols=141  Identities=11%  Similarity=0.146  Sum_probs=86.6

Q ss_pred             HHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcC-----CChHHHHHHHHHHHHHHHH
Q 002658           77 LPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKD-----SDSGMKEACRDSIGSLSKL  150 (896)
Q Consensus        77 Lp~fLs~L~es~-ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkD-----pDs~VR~Ac~~aLG~LA~~  150 (896)
                      +|.+|..|..-+ .+..+..|++++++||.+..     +-||.-|.   +.+.+.+     ......+...     +...
T Consensus         8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-----LDP~~~k~---~~~~~~~~~~~~~~~~~~~~~l-----~~~~   74 (160)
T PF11865_consen    8 YPELLDILLNILKTEQSQSIRREALRVLGILGA-----LDPYKHKS---IQKSLDSKSSENSNDESTDISL-----PMMG   74 (160)
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-----cCcHHHhc---ccccCCccccccccccchhhHH-----hhcc
Confidence            555555555443 23459999999999998854     56666552   2222221     1112222211     1111


Q ss_pred             HhcccccCCchhH-hhhHHHHHHHHhcCC-HhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHH
Q 002658          151 YLNGKEENNGTVV-GLFVKPLFEAMMEQN-KGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLP  228 (896)
Q Consensus       151 li~~~~e~~~~~~-~~lL~pL~eaL~Eqn-k~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~  228 (896)
                      + .+   ..++++ ..++..|+..|.|+. .....++..|+-.++...+....+||++++|.++..+++-....++.++.
T Consensus        75 ~-~~---~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~  150 (160)
T PF11865_consen   75 I-SP---SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQ  150 (160)
T ss_pred             C-CC---chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHH
Confidence            1 00   112333 335577777776653 34445788888888877777778999999999999999755577887777


Q ss_pred             HHHHHH
Q 002658          229 VVGSLS  234 (896)
Q Consensus       229 aIgSLA  234 (896)
                      -++.++
T Consensus       151 qL~~lv  156 (160)
T PF11865_consen  151 QLADLV  156 (160)
T ss_pred             HHHHHH
Confidence            777765

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=95.89  E-value=1.1  Score=48.15  Aligned_cols=194  Identities=16%  Similarity=0.145  Sum_probs=118.9

Q ss_pred             HHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHh
Q 002658           49 LSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKR  128 (896)
Q Consensus        49 L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~Ilrr  128 (896)
                      +.+-.+...+...+..|-.++.+=. ...++++..|..-....+...+--+++++-.+.. ..+..-|+|..++-....+
T Consensus         9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~-~~~r~f~~L~~~L~~~~~r   86 (234)
T PF12530_consen    9 LGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWK-ANDRHFPFLQPLLLLLILR   86 (234)
T ss_pred             hcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHhh
Confidence            5555677777777777777776322 3466777766655555445455567777766666 3344458887777664433


Q ss_pred             ----hcCCCh--HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCc
Q 002658          129 ----LKDSDS--GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPV  201 (896)
Q Consensus       129 ----LkDpDs--~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a~d~~~  201 (896)
                          ..+.+.  .+.-++..++..++...   +     ..+..+++.|...| .+.++.+|.-|..+|+.+|+..--.+.
T Consensus        87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~~---p-----~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~  158 (234)
T PF12530_consen   87 IPSSFSSKDEFWECLISIAASIRDICCSR---P-----DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFY  158 (234)
T ss_pred             cccccCCCcchHHHHHHHHHHHHHHHHhC---h-----hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHH
Confidence                222232  22333344555555544   1     35888999999999 788999999999999999975322222


Q ss_pred             hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh---cc----ccCcccHHHHHHHHHHhhCCCC
Q 002658          202 VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ---VG----AIAPQSLEPLLQSIHECLGSTD  259 (896)
Q Consensus       202 ~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~---vg----a~~~pyle~lLp~L~e~LsddD  259 (896)
                      ....-|.++|       ....++.++..+.++..   -+    +........++..|-++....+
T Consensus       159 s~w~vl~~~l-------~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~  216 (234)
T PF12530_consen  159 SAWKVLQKKL-------SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD  216 (234)
T ss_pred             HHHHHHHHhc-------CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence            3344455555       33345566666666642   11    2345556677777778777765

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=95.87  E-value=0.071  Score=60.28  Aligned_cols=133  Identities=20%  Similarity=0.258  Sum_probs=89.4

Q ss_pred             hHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC-------chhhHHHHHHHHHHHH
Q 002658          162 VVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ-------NFMAKASLLPVVGSLS  234 (896)
Q Consensus       162 ~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~-------s~kaK~alL~aIgSLA  234 (896)
                      ....|+.-+.+++...+......|..+|.       .  .+.|+.|+|+|+..+...       +...-..++.++.++.
T Consensus       175 Elq~yf~~It~a~~~~~~~~r~~aL~sL~-------t--D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl  245 (343)
T cd08050         175 ELQLYFEEITEALVGSNEEKRREALQSLR-------T--DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL  245 (343)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHhc-------c--CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh
Confidence            36677788888886666655554443321       1  135677888888777543       1222224555666665


Q ss_pred             hccc-cCcccHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhh
Q 002658          235 QVGA-IAPQSLEPLLQSIHECL----------GSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPV  303 (896)
Q Consensus       235 ~vga-~~~pyle~lLp~L~e~L----------sddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpV  303 (896)
                      .-.. ...+|+-.+||+++.|+          .++.|.+|.-|+.+|+.|+...+....-...++++.+...-+|..++.
T Consensus       246 ~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~  325 (343)
T cd08050         246 DNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPL  325 (343)
T ss_pred             cCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCc
Confidence            4322 34899999999999986          235699999999999999999995544445667777777777877754

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.86  E-value=0.85  Score=57.23  Aligned_cols=224  Identities=13%  Similarity=0.118  Sum_probs=142.9

Q ss_pred             HHHHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccc-----
Q 002658           42 KQKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT-----  114 (896)
Q Consensus        42 k~rll~~L~KL--sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I-----  114 (896)
                      .+.+++||...  +|.+.|+.|=+.|.++-.  .| .|...|..|.- ..+..-++|.+|..-|++.+..++...     
T Consensus         3 ~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K--~p-gFv~~lLqIi~-~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~   78 (1010)
T KOG1991|consen    3 LQSLLQIFRATIDSDAKERKAAEQQLNQLEK--QP-GFVSSLLQIIM-DDGVPLPVRQAAAIYLKNKITKSWSSHEAPGR   78 (1010)
T ss_pred             hHHHHHHHHHhcCCChHHHHHHHHHHHHhhc--CC-cHHHHHHHHHH-ccCCchhHHHHHHHHHHHHHHhcCCccCCCCC
Confidence            36788888776  677899999988888776  34 33333333332 223456689999999999998877544     


Q ss_pred             -----hhhHHHHHHHHHHhhcCCChHHHHHHHHHH-HHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHH
Q 002658          115 -----STHVTKIISHIVKRLKDSDSGMKEACRDSI-GSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMC  188 (896)
Q Consensus       115 -----~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aL-G~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasA  188 (896)
                           ..--+.|...|+..+-.....+|-+-..++ +.|....        .+.|+.+++..-..|..++.+.--||..|
T Consensus        79 ~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~--------p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~  150 (1010)
T KOG1991|consen   79 PFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADY--------PEQWPGLLDKIKNLLQSQDANHVYGALLC  150 (1010)
T ss_pred             cCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCC--------cccchhHHHHHHHHhcCcchhhHHHHHHH
Confidence                 112344555666665555777887766666 3333333        15699999999999999999999999999


Q ss_pred             HHHHHHhcC-------CCCc----hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH----Hhcc--------ccCcccHH
Q 002658          189 MAKMVECAS-------DPPV----VAFQKLCARICKLLSNQNFMAKASLLPVVGSL----SQVG--------AIAPQSLE  245 (896)
Q Consensus       189 LAkIIE~a~-------d~~~----~yL~~LlPRL~kLLks~s~kaK~alL~aIgSL----A~vg--------a~~~pyle  245 (896)
                      |..++..-+       .++.    .+++.|+.++..+|...+++.-. ++..|-.+    +.-.        ..|.+.+.
T Consensus       151 l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~e-l~klIlKifks~~~~~LP~~L~~~~~f~~W~~  229 (1010)
T KOG1991|consen  151 LYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVE-LQKLILKIFKSLIYYELPLELSAPETFTSWME  229 (1010)
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHH-HHHHHHHHHHHHHHHhCCHHhhCchhHHHHHH
Confidence            999997641       1111    24555556666666666776322 22233332    2111        23444444


Q ss_pred             HHHHHHHHhhC------C-------CCHHHHHHHHHHHHHHHHhcc
Q 002658          246 PLLQSIHECLG------S-------TDWATRKAAADALSALALHSS  278 (896)
Q Consensus       246 ~lLp~L~e~Ls------d-------dDW~lRKaA~EaLgsLA~avG  278 (896)
                      .++..+..-+.      |       .=|..+|=|+-.|..+-...|
T Consensus       230 l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg  275 (1010)
T KOG1991|consen  230 LFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYG  275 (1010)
T ss_pred             HHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhC
Confidence            44444332211      1       128899999999999998888

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.74  E-value=1  Score=55.19  Aligned_cols=198  Identities=13%  Similarity=0.133  Sum_probs=123.2

Q ss_pred             CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHH--------HHH
Q 002658           74 QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRD--------SIG  145 (896)
Q Consensus        74 pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~--------aLG  145 (896)
                      |+.+.+|++.|.+.+.+..++|||-|+++++.|=.- .+.+.|--|.++...+-+=+||. .-|+|-.-        ++.
T Consensus       129 ~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~~e~Dps-CkRNAFi~L~~~D~ErAl~  206 (948)
T KOG1058|consen  129 PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLLTEQDPS-CKRNAFLMLFTTDPERALN  206 (948)
T ss_pred             HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHHhccCch-hHHHHHHHHHhcCHHHHHH
Confidence            667999999999999999999999999999988775 45566667777877776666664 12222111        111


Q ss_pred             HHHHHHhc------------------ccccCCchhHhhhHHHHHHHHhc-----------------CCHhHHHHHHHHHH
Q 002658          146 SLSKLYLN------------------GKEENNGTVVGLFVKPLFEAMME-----------------QNKGVQSGAAMCMA  190 (896)
Q Consensus       146 ~LA~~li~------------------~~~e~~~~~~~~lL~pL~eaL~E-----------------qnk~VQ~gAasALA  190 (896)
                      -|...+.+                  .+. .....-..+++.++..|..                 ++|.+-.+|+.|+-
T Consensus       207 Yl~~~idqi~~~~~~LqlViVE~Irkv~~-~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i  285 (948)
T KOG1058|consen  207 YLLSNIDQIPSFNDSLQLVIVELIRKVCL-ANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYI  285 (948)
T ss_pred             HHHhhHhhccCccHHHHHHHHHHHHHHHh-cCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHH
Confidence            11111110                  000 0012233455666666632                 46778888999888


Q ss_pred             HHHHhcCC----CCc------------hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHh
Q 002658          191 KMVECASD----PPV------------VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHEC  254 (896)
Q Consensus       191 kIIE~a~d----~~~------------~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~  254 (896)
                      .+++...+    ++.            ..+..|+--++.+|.+++..+|.-+|+.+--++.     ...++.++..|..-
T Consensus       286 ~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvs-----srNvediv~~Lkke  360 (948)
T KOG1058|consen  286 DLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVS-----SRNVEDIVQFLKKE  360 (948)
T ss_pred             HHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhh-----hccHHHHHHHHHHH
Confidence            88876422    111            1255667777788888888777766666555432     23566666666554


Q ss_pred             hC-------CCCHHHHHHHHHHHHHHHHhcch
Q 002658          255 LG-------STDWATRKAAADALSALALHSSN  279 (896)
Q Consensus       255 Ls-------ddDW~lRKaA~EaLgsLA~avGe  279 (896)
                      +.       ++.-.-|..-+++|.+.|...++
T Consensus       361 ~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~  392 (948)
T KOG1058|consen  361 VMKTHNEESDDNGKYRQLLIKTIHACAVKFPE  392 (948)
T ss_pred             HHhccccccccchHHHHHHHHHHHHHhhcChH
Confidence            32       23455688888888888877765

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.67  E-value=0.39  Score=58.82  Aligned_cols=65  Identities=23%  Similarity=0.242  Sum_probs=47.2

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 002658          247 LLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWK  315 (896)
Q Consensus       247 lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK  315 (896)
                      .+..+.+.+.-++.-+|.+|..||+.++ +-.+.+.   +++.-.|..|.+|++..|||.|.-+|....
T Consensus       467 yir~iyNRviLEn~ivRaaAv~alaKfg-~~~~~l~---~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  467 YIRFIYNRVILENAIVRAAAVSALAKFG-AQDVVLL---PSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             hhHHHhhhhhhhhhhhHHHHHHHHHHHh-cCCCCcc---ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            3334444444567789999999999988 2223333   566778889999999999999877777765

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.65  E-value=0.85  Score=59.50  Aligned_cols=215  Identities=18%  Similarity=0.143  Sum_probs=144.4

Q ss_pred             HHHHHHHHHHHHcCC--ChhHHHHHHHHHHHHHhcCCCCCHHHHHHH---Hhhh-cCCCChhhHHHHHHHHHHHHHHhcc
Q 002658           39 VEMKQKILTSLSKLA--DRDTHQIAIEDLEKTIQTLSQESLPMLLNC---LYES-SNDPKPAVKKESVRLLALVCELHSE  112 (896)
Q Consensus        39 ~~Lk~rll~~L~KLs--DRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~---L~es-~ss~k~~vRKeAIllLG~IAeg~~d  112 (896)
                      .++..++-.++.|++  |-.|.--|+++|-.++...+-+.+-.+|++   ++.. .-+.+..+|......+..+...+.+
T Consensus        37 ~~~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk  116 (1312)
T KOG0803|consen   37 LELDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKK  116 (1312)
T ss_pred             hccCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence            448889999999994  666999999999999987654443333333   3333 4678899999999999999999999


Q ss_pred             cchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH------------------
Q 002658          113 LTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM------------------  174 (896)
Q Consensus       113 ~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL------------------  174 (896)
                      .++|||..++|.++-...|.+..|..++-.+.......--+      ...|..+-+.++..+                  
T Consensus       117 ~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~------~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~  190 (1312)
T KOG0803|consen  117 KLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKD------RHVWFKCDPEIFYLVTEILVKETPDSLSDLRTL  190 (1312)
T ss_pred             HhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhh------HHHHHHhhHHHHHHHHHHHhccCccccchhhhc
Confidence            99999999999999999999988888887765443321100      011111111111111                  


Q ss_pred             -----hcCCHhHHHHHHHHHHHHHHh-cCCCCch---h-HH--HHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cccc-C
Q 002658          175 -----MEQNKGVQSGAAMCMAKMVEC-ASDPPVV---A-FQ--KLCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAI-A  240 (896)
Q Consensus       175 -----~Eqnk~VQ~gAasALAkIIE~-a~d~~~~---y-L~--~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vga~-~  240 (896)
                           ....++|-..+..+|.++... ..+....   + +.  .--..+-++++++...+|.++++++-++.+ +-.. .
T Consensus       191 s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~  270 (1312)
T KOG0803|consen  191 SSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVM  270 (1312)
T ss_pred             chHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcc
Confidence                 113466777788888888844 3222211   1 11  234677888899998999999999999875 2222 3


Q ss_pred             cccHHHHHHHHHHhhCCCC
Q 002658          241 PQSLEPLLQSIHECLGSTD  259 (896)
Q Consensus       241 ~pyle~lLp~L~e~LsddD  259 (896)
                      ++....+.+.+.....+.+
T Consensus       271 ~~~~~~l~~~~~~~~~~~d  289 (1312)
T KOG0803|consen  271 ESEKNYLKPVLLGSIDSLD  289 (1312)
T ss_pred             hhhhhHhhHHHHccccccc
Confidence            4444455566666655555

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=95.64  E-value=0.18  Score=52.55  Aligned_cols=141  Identities=18%  Similarity=0.164  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHH-----------HHHHHH-hcCCHhHHHHHHHHHHHHHHhc------
Q 002658          135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK-----------PLFEAM-MEQNKGVQSGAAMCMAKMVECA------  196 (896)
Q Consensus       135 ~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~-----------pL~eaL-~Eqnk~VQ~gAasALAkIIE~a------  196 (896)
                      .||.++..++..++..+-...   --.+|+.|+|           .|+..+ .|+++.|..+|+.+|+.++|+.      
T Consensus         1 kvR~~Al~~L~al~k~~~~r~---l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~   77 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRS---LFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQ   77 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCce---eHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHH
Confidence            389999999999999962211   1245666554           445555 6899999999999999999986      


Q ss_pred             -C--C----CCchh-------HHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhcc---ccCcccHHHHHHHHHHhhCCC
Q 002658          197 -S--D----PPVVA-------FQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQVG---AIAPQSLEPLLQSIHECLGST  258 (896)
Q Consensus       197 -~--d----~~~~y-------L~~LlPRL~kLLks~-s~kaK~alL~aIgSLA~vg---a~~~pyle~lLp~L~e~Lsdd  258 (896)
                       .  .    -..++       +-.|=-.|+.+|.+. +..+-..++.|+..++.+-   ..-..++..++..+..++.+.
T Consensus        78 Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~  157 (182)
T PF13251_consen   78 AEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHR  157 (182)
T ss_pred             HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcC
Confidence             1  1    11111       333445566666653 5556668899999987543   233677888888889999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcc
Q 002658          259 DWATRKAAADALSALALHSS  278 (896)
Q Consensus       259 DW~lRKaA~EaLgsLA~avG  278 (896)
                      |..+|-++.-||+.+....+
T Consensus       158 d~~v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  158 DPNVRVAALSCLGALLSVQP  177 (182)
T ss_pred             CCcHHHHHHHHHHHHHcCCC
Confidence            99999999999999887654

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=95.60  E-value=0.098  Score=48.66  Aligned_cols=79  Identities=23%  Similarity=0.284  Sum_probs=65.5

Q ss_pred             hhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHh
Q 002658           85 YESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVG  164 (896)
Q Consensus        85 ~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~  164 (896)
                      ....+++.+++|-+++..|..+++... .....+++|+..++..|+|+|+-|--.|..+++.|+....           .
T Consensus         9 l~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-----------~   76 (92)
T PF10363_consen    9 LSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-----------D   76 (92)
T ss_pred             HHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-----------H
Confidence            334567889999999999999999777 5556789999999999999999999999999999999982           2


Q ss_pred             hhHHHHHHHHh
Q 002658          165 LFVKPLFEAMM  175 (896)
Q Consensus       165 ~lL~pL~eaL~  175 (896)
                      .+++.|++.-.
T Consensus        77 ~vl~~L~~~y~   87 (92)
T PF10363_consen   77 EVLPILLDEYA   87 (92)
T ss_pred             HHHHHHHHHHh
Confidence            36666666553

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.60  E-value=1.1  Score=54.71  Aligned_cols=197  Identities=17%  Similarity=0.189  Sum_probs=120.9

Q ss_pred             HHHHHHHHhcC---CC--CCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHH
Q 002658           62 IEDLEKTIQTL---SQ--ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM  136 (896)
Q Consensus        62 a~eLD~La~~L---~p--d~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~V  136 (896)
                      +.-|.+++..|   ++  +.+..++.+|+....+.+-.||.-++.+|..+...-.+--.....+++..+..||.|-.|.|
T Consensus        63 l~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~V  142 (892)
T KOG2025|consen   63 LSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNV  142 (892)
T ss_pred             HHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchH
Confidence            33444555544   33  23788899999888888899999999999888873333334567888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHH-------HHHHhcCCCCch----hH
Q 002658          137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMA-------KMVECASDPPVV----AF  204 (896)
Q Consensus       137 R~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALA-------kIIE~a~d~~~~----yL  204 (896)
                      |-.|+.++.+|=..-.++       .. .+...|...+ .++++.|..+|.+|+.       .++|-+.|....    ..
T Consensus       143 RiqAv~aLsrlQ~d~~de-------e~-~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY  214 (892)
T KOG2025|consen  143 RIQAVLALSRLQGDPKDE-------EC-PVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVY  214 (892)
T ss_pred             HHHHHHHHHHHhcCCCCC-------cc-cHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHH
Confidence            999999988775422111       12 2344444444 5889999999988764       566665543321    13


Q ss_pred             HHHHHHH--------------HHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCC-CHHHHHHHHHH
Q 002658          205 QKLCARI--------------CKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGST-DWATRKAAADA  269 (896)
Q Consensus       205 ~~LlPRL--------------~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~Lsdd-DW~lRKaA~Ea  269 (896)
                      ..++|++              ..-|++..+-+|.++.++|.+=      ...+.+.=++-|++.|.-+ ...++-.|+++
T Consensus       215 ~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~------Wl~~~dgni~ElL~~ldvsnss~vavk~lea  288 (892)
T KOG2025|consen  215 ERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSG------WLRFSDGNILELLERLDVSNSSEVAVKALEA  288 (892)
T ss_pred             HHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH------HhhhccccHHHHHHHhccccchHHHHHHHHH
Confidence            3344443              2334445666666666666551      0011112233333444433 23556666666


Q ss_pred             HHH
Q 002658          270 LSA  272 (896)
Q Consensus       270 Lgs  272 (896)
                      |-.
T Consensus       289 lf~  291 (892)
T KOG2025|consen  289 LFS  291 (892)
T ss_pred             HHH
Confidence            555

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=95.57  E-value=0.28  Score=49.87  Aligned_cols=137  Identities=9%  Similarity=0.078  Sum_probs=102.0

Q ss_pred             chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc-CCHhHHHHHHHHHHHH
Q 002658          114 TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME-QNKGVQSGAAMCMAKM  192 (896)
Q Consensus       114 I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E-qnk~VQ~gAasALAkI  192 (896)
                      ....+.+.+..|...|+++++.-|-+.+..++.++++.--+.+.   ......+..|+..|.. ..+.+-+.|+.+|..+
T Consensus        19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~---~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l   95 (165)
T PF08167_consen   19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILL---SHGSQWLRALLSILEKPDPPSVLEAAIITLTRL   95 (165)
T ss_pred             CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999988886211221   2344566667777744 4567889999999999


Q ss_pred             HHhcCC-------CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhh
Q 002658          193 VECASD-------PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECL  255 (896)
Q Consensus       193 IE~a~d-------~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~~pyle~lLp~L~e~L  255 (896)
                      ++....       ...+.++.+++-++++++.  ......+++++..+...- ..|.||...+-..+..++
T Consensus        96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll  164 (165)
T PF08167_consen   96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL  164 (165)
T ss_pred             HHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence            998622       2246788888888888885  345567888998887643 678888888777776654

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=95.56  E-value=0.49  Score=56.49  Aligned_cols=165  Identities=10%  Similarity=0.098  Sum_probs=98.8

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH-hccc-------chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 002658           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCEL-HSEL-------TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLS  148 (896)
Q Consensus        77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg-~~d~-------I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA  148 (896)
                      +..++..+........+..|..|++++|.++.. |.+.       +..+++++...+-....+.+...+..+..+||.+.
T Consensus       395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g  474 (574)
T smart00638      395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG  474 (574)
T ss_pred             HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence            444444444333345678999999999999984 4333       13466666666666666677778888888888554


Q ss_pred             HHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC--chhhHHHH
Q 002658          149 KLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ--NFMAKASL  226 (896)
Q Consensus       149 ~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~--s~kaK~al  226 (896)
                      ..-           .-.++.+++..=......++.+|+.||.++.+..+..       +-+.|++++.+.  +..+|.++
T Consensus       475 ~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~-------v~~~l~~i~~n~~e~~EvRiaA  536 (574)
T smart00638      475 HPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK-------VQEVLLPIYLNRAEPPEVRMAA  536 (574)
T ss_pred             Chh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH-------HHHHHHHHHcCCCCChHHHHHH
Confidence            333           1123333333112346678999999999988755443       566777777764  55677655


Q ss_pred             HHHHHHHHhccccCcccHHHHHHHHHHhh-CCCCHHHHHHHH
Q 002658          227 LPVVGSLSQVGAIAPQSLEPLLQSIHECL-GSTDWATRKAAA  267 (896)
Q Consensus       227 L~aIgSLA~vga~~~pyle~lLp~L~e~L-sddDW~lRKaA~  267 (896)
                      +.++-..       .|-. ..|..+.+.+ .+.+.+++..+.
T Consensus       537 ~~~lm~t-------~P~~-~~l~~ia~~l~~E~~~QV~sfv~  570 (574)
T smart00638      537 VLVLMET-------KPSV-ALLQRIAELLNKEPNLQVASFVY  570 (574)
T ss_pred             HHHHHhc-------CCCH-HHHHHHHHHHhhcCcHHHHHHhH
Confidence            5443321       1222 2333333433 445677765544

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.54  E-value=2.3  Score=52.13  Aligned_cols=243  Identities=12%  Similarity=0.144  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHcCCChhHHH--HHHHHHHHHHhc-C---CCCC---HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH
Q 002658           39 VEMKQKILTSLSKLADRDTHQ--IAIEDLEKTIQT-L---SQES---LPMLLNCLYESSNDPKPAVKKESVRLLALVCEL  109 (896)
Q Consensus        39 ~~Lk~rll~~L~KLsDRDT~k--~Aa~eLD~La~~-L---~pd~---Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg  109 (896)
                      +.|..+|+.-|+.+-.+ |.+  .-.+.+..++.. +   -++.   +...+.-|.....+.++..|--++++++-|+..
T Consensus       251 PRLgKKLieplt~li~s-T~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~kt  329 (877)
T KOG1059|consen  251 PRLGKKLIEPITELMES-TVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT  329 (877)
T ss_pred             chhhhhhhhHHHHHHHh-hHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh
Confidence            56777777777777422 322  233344444432 1   1223   444444455556778888999999999999999


Q ss_pred             hcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHH
Q 002658          110 HSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCM  189 (896)
Q Consensus       110 ~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasAL  189 (896)
                      |+..+..|.    ..|+++|.|.|..||--|.+.+-.++..          +.+.++++.|+..+.......-  --.-|
T Consensus       330 Hp~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl~gmVsk----------kNl~eIVk~LM~~~~~ae~t~y--rdell  393 (877)
T KOG1059|consen  330 HPKAVQAHK----DLILRCLDDKDESIRLRALDLLYGMVSK----------KNLMEIVKTLMKHVEKAEGTNY--RDELL  393 (877)
T ss_pred             CHHHHHHhH----HHHHHHhccCCchhHHHHHHHHHHHhhh----------hhHHHHHHHHHHHHHhccchhH--HHHHH
Confidence            999998876    5678999999999999888876554432          3367788888887732221000  00112


Q ss_pred             HHHHHhc---CCCCchhHHHHHHHHHHHhcCCchh----hHHHHHHHHHHHHhccccCcccHHHHHHHHHH-hhCCCCHH
Q 002658          190 AKMVECA---SDPPVVAFQKLCARICKLLSNQNFM----AKASLLPVVGSLSQVGAIAPQSLEPLLQSIHE-CLGSTDWA  261 (896)
Q Consensus       190 AkIIE~a---~d~~~~yL~~LlPRL~kLLks~s~k----aK~alL~aIgSLA~vga~~~pyle~lLp~L~e-~LsddDW~  261 (896)
                      .++|+-+   ......-++=.+--|..+.+=++..    +-+.+++.-   +.| ....++.-..|-.|+. .+...+.+
T Consensus       394 ~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~---iRV-~~iR~fsV~~m~~Ll~~~~~~~s~q  469 (877)
T KOG1059|consen  394 TRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVA---IRV-PSIRPFSVSQMSALLDDPLLAGSAQ  469 (877)
T ss_pred             HHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHh---eec-hhhhHhHHHHHHHHHhchhhccchh
Confidence            3333322   1111110111112222222211111    111111110   111 1122222222222222 22233556


Q ss_pred             HHHHHHHHHHHHHHhcchH--HHhhHHHHHHHHHhhhcCCChh
Q 002658          262 TRKAAADALSALALHSSNL--VIDGATSTLTVLEACRFDKIKP  302 (896)
Q Consensus       262 lRKaA~EaLgsLA~avGe~--L~Py~~~~I~~LE~~RfDKvKp  302 (896)
                      .+..-|+.|.+.|=..|++  |...-..++++|..-++|..++
T Consensus       470 ~n~~l~eVL~AaaWi~GEyse~ven~~~~leamlrpr~~~lp~  512 (877)
T KOG1059|consen  470 INSQLCEVLYAAAWILGEYSEFVENPNDTLEAMLRPRSDLLPG  512 (877)
T ss_pred             hccchhHHHHHHHHHHHHHHHHhhCHHHHHHHHhcCccccCch
Confidence            6777788888888888854  2233466777777777766543

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=95.52  E-value=1.8  Score=49.15  Aligned_cols=212  Identities=12%  Similarity=0.168  Sum_probs=130.4

Q ss_pred             HHHhhhcCCCChhhHHHHHHHHHHHHHHhccc--------chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhc
Q 002658           82 NCLYESSNDPKPAVKKESVRLLALVCELHSEL--------TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLN  153 (896)
Q Consensus        82 s~L~es~ss~k~~vRKeAIllLG~IAeg~~d~--------I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~  153 (896)
                      ..|...+...+...||.+..+++++.+...+.        +..|.|.|+..++++-.+|+..+      ..|.+.+.+++
T Consensus        79 ~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial------~~g~mlRec~k  152 (335)
T PF08569_consen   79 YLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL------NCGDMLRECIK  152 (335)
T ss_dssp             HHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH------HHHHHHHHHTT
T ss_pred             HHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc------hHHHHHHHHHh
Confidence            33444445677889999999999998876433        33344899999999999998322      23333333333


Q ss_pred             ccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchh----HHHHHHHHHHHhcCCchhhHHHHHHH
Q 002658          154 GKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVA----FQKLCARICKLLSNQNFMAKASLLPV  229 (896)
Q Consensus       154 ~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~y----L~~LlPRL~kLLks~s~kaK~alL~a  229 (896)
                      ...-..--.....+-.+|+.+..++=.|..-|+..+..+.-.-+....+|    ++.....+.++|.+.+|-+|-..|.+
T Consensus       153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL  232 (335)
T PF08569_consen  153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL  232 (335)
T ss_dssp             SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred             hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence            10000000011233347777777777888778887777765433333344    55677889999999999999999999


Q ss_pred             HHHHHh--cc-ccCcccHH--HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc--h----HHHhhHHHHHHHHHhhhcC
Q 002658          230 VGSLSQ--VG-AIAPQSLE--PLLQSIHECLGSTDWATRKAAADALSALALHSS--N----LVIDGATSTLTVLEACRFD  298 (896)
Q Consensus       230 IgSLA~--vg-a~~~pyle--~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG--e----~L~Py~~~~I~~LE~~RfD  298 (896)
                      +|-+.-  .. ..+.-|+.  ..|-.+...|.+....++-.|...+-.....-.  +    .+..-.+.+|++|.....|
T Consensus       233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~  312 (335)
T PF08569_consen  233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHTD  312 (335)
T ss_dssp             HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT
T ss_pred             HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999962  22 22233332  334455678899999999888888766544322  2    2333357889999888888


Q ss_pred             C
Q 002658          299 K  299 (896)
Q Consensus       299 K  299 (896)
                      +
T Consensus       313 ~  313 (335)
T PF08569_consen  313 R  313 (335)
T ss_dssp             -
T ss_pred             C
Confidence            7

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.48  E-value=0.58  Score=55.00  Aligned_cols=57  Identities=23%  Similarity=0.237  Sum_probs=51.5

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCC
Q 002658           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD  133 (896)
Q Consensus        77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpD  133 (896)
                      +..++-.+.....+++...|..|++.||+.++++++.+..|-++|+-.|+++|-|++
T Consensus       256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~  312 (533)
T KOG2032|consen  256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDL  312 (533)
T ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCC
Confidence            666777777777788889999999999999999999999999999999999999986

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.47  E-value=2.4  Score=51.91  Aligned_cols=200  Identities=14%  Similarity=0.163  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHhccc--chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc
Q 002658           99 SVRLLALVCELHSEL--TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME  176 (896)
Q Consensus        99 AIllLG~IAeg~~d~--I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E  176 (896)
                      .+..++..++..++.  -...+.+++-+|+|+..-++-.||--||..|..++..... .   .+..+..+...|...|-+
T Consensus        62 Il~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-i---dd~vfn~l~e~l~~Rl~D  137 (892)
T KOG2025|consen   62 ILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-I---DDDVFNKLNEKLLIRLKD  137 (892)
T ss_pred             HHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-c---CHHHHHHHHHHHHHHHhc
Confidence            444455555544433  2457889999999999999999999999999999885522 1   236678888888888888


Q ss_pred             CCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh-cCCchhhHHHHHHHHHH-------HH----hcc-ccCc--
Q 002658          177 QNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLL-SNQNFMAKASLLPVVGS-------LS----QVG-AIAP--  241 (896)
Q Consensus       177 qnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLL-ks~s~kaK~alL~aIgS-------LA----~vg-a~~~--  241 (896)
                      ..|.|..-|..||.++-++..+..-+.    ..-+..++ ++|+..+|-++|.+|.-       +.    .+. +.-.  
T Consensus       138 rep~VRiqAv~aLsrlQ~d~~dee~~v----~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlv  213 (892)
T KOG2025|consen  138 REPNVRIQAVLALSRLQGDPKDEECPV----VNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLV  213 (892)
T ss_pred             cCchHHHHHHHHHHHHhcCCCCCcccH----HHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHH
Confidence            889999889999999997654443333    33334444 45788888887776542       11    000 0000  


Q ss_pred             ------------ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHH
Q 002658          242 ------------QSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNE  309 (896)
Q Consensus       242 ------------pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~e  309 (896)
                                  -.++..+..|...|.|.+..+|+++.++|..      +.+.-.-..+++.|+..---...   +++..
T Consensus       214 Y~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~------~Wl~~~dgni~ElL~~ldvsnss---~vavk  284 (892)
T KOG2025|consen  214 YERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILS------GWLRFSDGNILELLERLDVSNSS---EVAVK  284 (892)
T ss_pred             HHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH------HHhhhccccHHHHHHHhccccch---HHHHH
Confidence                        0111222234445667777788777777652      22222235566666644333333   34455


Q ss_pred             HHHHHH
Q 002658          310 ALQLWK  315 (896)
Q Consensus       310 ALe~WK  315 (896)
                      ||+++-
T Consensus       285 ~lealf  290 (892)
T KOG2025|consen  285 ALEALF  290 (892)
T ss_pred             HHHHHH
Confidence            555543

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.41  E-value=6  Score=49.68  Aligned_cols=265  Identities=14%  Similarity=0.125  Sum_probs=155.2

Q ss_pred             HHHHHHHHHHcC--C--ChhHHHHHHHHHHHHHhcCC--CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccc
Q 002658           41 MKQKILTSLSKL--A--DRDTHQIAIEDLEKTIQTLS--QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT  114 (896)
Q Consensus        41 Lk~rll~~L~KL--s--DRDT~k~Aa~eLD~La~~L~--pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I  114 (896)
                      +-+++++.....  +  ..+..+.+.+.+..+..-|.  |-.+++.|+.|.+.+..  +..-.+++.-|..+|+.|...+
T Consensus       505 ~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~--sk~s~q~i~tl~tlC~~C~~~L  582 (982)
T KOG2022|consen  505 WIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHN--SKESEQAISTLKTLCETCPESL  582 (982)
T ss_pred             HHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcC--chHHHHHHHHHHHHHHhhhhhC
Confidence            455566555433  3  77888888999998887773  54599999999988753  3334578888999999999999


Q ss_pred             hhhHHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh---c---CCHh------
Q 002658          115 STHVTKIISHIVKRLKDS--DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM---E---QNKG------  180 (896)
Q Consensus       115 ~P~LpkIL~~IlrrLkDp--Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~---E---qnk~------  180 (896)
                      .||+..++.++...|.-.  ...+|-....+||-+...+ +  .++..++...++.|++.-|.   .   +++.      
T Consensus       583 ~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~-~--pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~  659 (982)
T KOG2022|consen  583 DPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRL-K--PEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIA  659 (982)
T ss_pred             chHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhc-c--HHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence            999999999888877553  3567888888888888877 3  33344666777777777772   1   1222      


Q ss_pred             HHHHHHHHHHHHHHhcC-----C------------CCchhHHHHHHHHHHHhcCCchhhHH-HHHHHHHHHHh-----cc
Q 002658          181 VQSGAAMCMAKMVECAS-----D------------PPVVAFQKLCARICKLLSNQNFMAKA-SLLPVVGSLSQ-----VG  237 (896)
Q Consensus       181 VQ~gAasALAkIIE~a~-----d------------~~~~yL~~LlPRL~kLLks~s~kaK~-alL~aIgSLA~-----vg  237 (896)
                      .|..+.++|..-.-...     +            .+...+.+++|-+-+++.-   -.+. ..++++..+..     ++
T Consensus       660 ~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~---~~~~s~vve~~C~i~~~~v~~~~  736 (982)
T KOG2022|consen  660 FQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSM---WLGLSDVVEASCIIMVKGVRSLL  736 (982)
T ss_pred             HHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHH---HhcchhHHHHHHHHHHhcccccc
Confidence            33345555544332210     0            1112355666666666651   1111 23333333322     22


Q ss_pred             ccC-cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh----------cchHHHhhHHHHHHHHHhhhcCCChhhHHH
Q 002658          238 AIA-PQSLEPLLQSIHECLGSTDWATRKAAADALSALALH----------SSNLVIDGATSTLTVLEACRFDKIKPVRDS  306 (896)
Q Consensus       238 a~~-~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~a----------vGe~L~Py~~~~I~~LE~~RfDKvKpVRDa  306 (896)
                      ..| .|++..+++.+..+++..--    .+++...+++.+          ++..|...++..+.+++.--|-.+.   |.
T Consensus       737 ~sF~~p~l~~l~~Fi~r~~~~~~a----~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~---Di  809 (982)
T KOG2022|consen  737 TSFPEPMLPSLCPFIVRFLTSCLA----VTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQP---DI  809 (982)
T ss_pred             ccchhhhHHHHHHHHHHhccchHH----HHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCc---hH
Confidence            335 66666666666665554221    112221111111          1123334456666677755555554   44


Q ss_pred             HHHHH----HHHHHhccC
Q 002658          307 MNEAL----QLWKKIAGK  320 (896)
Q Consensus       307 A~eAL----e~WK~la~~  320 (896)
                      +.+-+    +.||.+|+.
T Consensus       810 ~~~~~~~v~~ilkk~P~~  827 (982)
T KOG2022|consen  810 YLQLIGFVRQILKKIPKF  827 (982)
T ss_pred             HHHHHHHHHHHHHhCcCc
Confidence            44444    446666655

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.39  E-value=0.63  Score=57.39  Aligned_cols=256  Identities=13%  Similarity=0.100  Sum_probs=155.8

Q ss_pred             CChhHHHHHH-HHHHHHHhcCCCCCHHHHHHHHhhh------cCCCChhhHHHHHHHHHHHHHH-----hc----ccchh
Q 002658           53 ADRDTHQIAI-EDLEKTIQTLSQESLPMLLNCLYES------SNDPKPAVKKESVRLLALVCEL-----HS----ELTST  116 (896)
Q Consensus        53 sDRDT~k~Aa-~eLD~La~~L~pd~Lp~fLs~L~es------~ss~k~~vRKeAIllLG~IAeg-----~~----d~I~P  116 (896)
                      +|-|||+-|+ +-+.-+...+.....+.|..++...      ..+.+|..+..++.++..++--     ||    ..+.+
T Consensus       373 sDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvd  452 (960)
T KOG1992|consen  373 SDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVD  452 (960)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeecccccc
Confidence            6888877554 5555566666443344444443322      2477899899999999888754     22    12344


Q ss_pred             hHHHHHHHHHHhhcCC----ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 002658          117 HVTKIISHIVKRLKDS----DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM  192 (896)
Q Consensus       117 ~LpkIL~~IlrrLkDp----Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkI  192 (896)
                      ........|++-|.-|    .|.++..+.+=+-.+=.++       +..+.-.++|.|+..|......|-.-||.|+.++
T Consensus       453 v~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql-------~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEki  525 (960)
T KOG1992|consen  453 VVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQL-------GKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKL  525 (960)
T ss_pred             HHHHHHHHhhHHhccCccccccchhhcccceeeeecccC-------ChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhc
Confidence            4444455555555553    4777776665554444444       2356777889999999888888999999999987


Q ss_pred             HHhc---------CCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCC-----
Q 002658          193 VECA---------SDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGS-----  257 (896)
Q Consensus       193 IE~a---------~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~~pyle~lLp~L~e~Lsd-----  257 (896)
                      .=..         ...+.+|+..++..|++.++.|.-.--+.++.||-.++.+- ....|++..+++.|.+++..     
T Consensus       526 l~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNP  605 (960)
T KOG1992|consen  526 LTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNP  605 (960)
T ss_pred             cccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCC
Confidence            6322         23345677788888888887764432346788888887665 45678899999888887543     


Q ss_pred             CCHHHHHHHHHHHHHHHHhcc----hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658          258 TDWATRKAAADALSALALHSS----NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA  318 (896)
Q Consensus       258 dDW~lRKaA~EaLgsLA~avG----e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la  318 (896)
                      .+..-=---.|+++.+-...+    ..+..+-..++.+++.--...+.   |.+==++++...+.
T Consensus       606 s~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~---EfiPYvfQlla~lv  667 (960)
T KOG1992|consen  606 SNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQ---EFIPYVFQLLAVLV  667 (960)
T ss_pred             CCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            233333334455555444333    33444445555444433333333   44444566655555

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=95.34  E-value=0.14  Score=49.07  Aligned_cols=73  Identities=15%  Similarity=0.196  Sum_probs=61.2

Q ss_pred             HHHHHHHHhhhcCCCC----hhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002658           77 LPMLLNCLYESSNDPK----PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY  151 (896)
Q Consensus        77 Lp~fLs~L~es~ss~k----~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~l  151 (896)
                      +-.++..+.+.+.+.+    -..|+.++++++.+.+.++..+..++|+|+.++...|..++  +|..|+.+-..+...+
T Consensus         9 ~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~L   85 (107)
T smart00802        9 FLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKTL   85 (107)
T ss_pred             HHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHhC
Confidence            4455666665554433    34689999999999999999999999999999999998665  9999999999999999

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=95.31  E-value=7  Score=44.80  Aligned_cols=188  Identities=16%  Similarity=0.138  Sum_probs=115.8

Q ss_pred             hHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH
Q 002658           95 VKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM  174 (896)
Q Consensus        95 vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL  174 (896)
                      +=.+.+.++..+..-+++.+..+...=++.++..+-+....||..| .+++..+...+.                     
T Consensus       150 i~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a-~~l~~~~~~~l~---------------------  207 (372)
T PF12231_consen  150 IISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKA-ISLLLEAKKCLG---------------------  207 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHhC---------------------
Confidence            4456777888888888888888888888888888888888888874 344444333322                     


Q ss_pred             hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHH
Q 002658          175 MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSN-QNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIH  252 (896)
Q Consensus       175 ~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks-~s~kaK~alL~aIgSLA~vg-a~~~pyle~lLp~L~  252 (896)
                        +++.+...    +..+.+..-.. ..|.+.+++||.+++.+ .+++.=..+=.++-.+.+.. -..-.++...+....
T Consensus       208 --~~~~~s~~----~~~~~~~~~~~-~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e  280 (372)
T PF12231_consen  208 --PNKELSKS----VLEDLQRSLEN-GKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPE  280 (372)
T ss_pred             --hhHHHHHH----HHHHhcccccc-ccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHH
Confidence              12222111    11111111111 15788899999999998 55542222222222222111 123678999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHhh-----HHHHHHHHHhhhcCCCh-hhHHHHHHHH
Q 002658          253 ECLGSTDWATRKAAADALSALALHSS--NLVIDG-----ATSTLTVLEACRFDKIK-PVRDSMNEAL  311 (896)
Q Consensus       253 e~LsddDW~lRKaA~EaLgsLA~avG--e~L~Py-----~~~~I~~LE~~RfDKvK-pVRDaA~eAL  311 (896)
                      .|+.+.|..+|.+|..+-..+.....  +.-.+-     ..+++..++....++.+ .+|+.++..+
T Consensus       281 ~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l  347 (372)
T PF12231_consen  281 KCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSL  347 (372)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHH
Confidence            99999999999999999888877665  222122     24444444555555555 6777754433

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.30  E-value=0.49  Score=61.41  Aligned_cols=168  Identities=14%  Similarity=0.185  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 002658          135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKL  214 (896)
Q Consensus       135 ~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kL  214 (896)
                      .-++.+++.+-.|+..-   .+   ...+..+|+-++..|+++...+-.-|.-||..++|.-+..  -..+.+-..+..-
T Consensus       792 ~d~~~a~li~~~la~~r---~f---~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v--L~~~dvq~~Vh~R  863 (1692)
T KOG1020|consen  792 ADDDDAKLIVFYLAHAR---SF---SQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV--LSRPDVQEAVHGR  863 (1692)
T ss_pred             ccchhHHHHHHHHHhhh---HH---HHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh--hcCHHHHHHHHHh
Confidence            44677777666555544   22   1347889999999999999999999999999999964332  1223344444555


Q ss_pred             hcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHh
Q 002658          215 LSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEA  294 (896)
Q Consensus       215 Lks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~  294 (896)
                      +.+.+..+|.++++++|.++-   ..+.++..+-..+.+...|+.-.+||.|+..|--|....+++-. ...-|.++|- 
T Consensus       864 ~~DssasVREAaldLvGrfvl---~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-i~~~cakmlr-  938 (1692)
T KOG1020|consen  864 LNDSSASVREAALDLVGRFVL---SIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK-IVDMCAKMLR-  938 (1692)
T ss_pred             hccchhHHHHHHHHHHhhhhh---ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-HHHHHHHHHH-
Confidence            567788999999999999874   33445555555666888899999999999999999999985321 2233444443 


Q ss_pred             hhcCCChhhHHHHHHHH-HHHH
Q 002658          295 CRFDKIKPVRDSMNEAL-QLWK  315 (896)
Q Consensus       295 ~RfDKvKpVRDaA~eAL-e~WK  315 (896)
                      .-.|.-..|.+.+.+.+ .+|=
T Consensus       939 Rv~DEEg~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  939 RVNDEEGNIKKLVRETFLKLWF  960 (1692)
T ss_pred             HhccchhHHHHHHHHHHHHHhc
Confidence            33343333667766655 4563

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=95.26  E-value=0.17  Score=48.03  Aligned_cols=73  Identities=16%  Similarity=0.181  Sum_probs=61.9

Q ss_pred             HHHHHHHHhhhcCC----CChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002658           77 LPMLLNCLYESSND----PKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY  151 (896)
Q Consensus        77 Lp~fLs~L~es~ss----~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~l  151 (896)
                      +-.++.++-+.+.+    ..-..|+.++.+++.+.+.++.++.+++|+|+.++...|..+  .+|..|+.+-..+...+
T Consensus         9 ~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L   85 (107)
T PF08064_consen    9 ILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTL   85 (107)
T ss_pred             HHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHC
Confidence            44555555555433    456689999999999999999999999999999999999888  79999999999999999

; GO: 0004674 protein serine/threonine kinase activity

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=95.17  E-value=0.93  Score=55.33  Aligned_cols=140  Identities=18%  Similarity=0.191  Sum_probs=92.2

Q ss_pred             chhhHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 002658          114 TSTHVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM  192 (896)
Q Consensus       114 I~P~LpkIL~~IlrrLkDpDs-~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkI  192 (896)
                      ...|-++|+|.|..-++-+++ .++-...+-+-.|.+.+-      .++....+|+-|+.++.+....+|+.+...+..+
T Consensus       343 ~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~------~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv  416 (700)
T KOG2137|consen  343 QNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTP------PEEVKEKILPLLYRSLEDSDVQIQELALQILPTV  416 (700)
T ss_pred             hhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC------hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHH
Confidence            445667777777777765554 334333444444444441      2366788999999999999999999999999999


Q ss_pred             HHhcCCCCchhHHHHHHHHHHHh-cCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHH
Q 002658          193 VECASDPPVVAFQKLCARICKLL-SNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATR  263 (896)
Q Consensus       193 IE~a~d~~~~yL~~LlPRL~kLL-ks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lR  263 (896)
                      .|.++..  -.=+.|+|||-.+. ++.+..+|..+|.|++.+++.-+ ....+ ..+.+++.+....|..+-
T Consensus       417 ~e~iD~~--~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD-~~~v~-d~~lpi~~~~~~~dp~iv  484 (700)
T KOG2137|consen  417 AESIDVP--FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD-KAAVL-DELLPILKCIKTRDPAIV  484 (700)
T ss_pred             HHhccHH--HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH-HHHhH-HHHHHHHHHhcCCCcHHH
Confidence            9876421  23446889988774 45677789999999999985221 12233 344455566655555543

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=95.10  E-value=0.25  Score=54.99  Aligned_cols=127  Identities=18%  Similarity=0.200  Sum_probs=80.2

Q ss_pred             HhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh---hH---HHHHHHHHHHHh
Q 002658          163 VGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM---AK---ASLLPVVGSLSQ  235 (896)
Q Consensus       163 ~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~k---aK---~alL~aIgSLA~  235 (896)
                      +..++..++.+| +|.+.....+|..||.       +.  +-|++|+|.|+..++....+   -.   ..++..+.|+..
T Consensus       195 Lq~YF~kvisal~dEs~~~~r~aAl~sLr-------~d--sGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~  265 (450)
T COG5095         195 LQMYFDKVISALLDESDEQTRDAALESLR-------ND--SGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLK  265 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cC--ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhc
Confidence            445555666666 4455555556665542       22  45889999999888754222   11   133444445443


Q ss_pred             ccccC-cccHHHHHHHHHHhhC-----C-----CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcC
Q 002658          236 VGAIA-PQSLEPLLQSIHECLG-----S-----TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFD  298 (896)
Q Consensus       236 vga~~-~pyle~lLp~L~e~Ls-----d-----dDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfD  298 (896)
                      --.+| .||+..+||+++-||-     +     +-..+|+-|++.|..+....+......++++++-+...-+|
T Consensus       266 N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD  339 (450)
T COG5095         266 NKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLD  339 (450)
T ss_pred             CCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHh
Confidence            23444 8999999999988852     2     12569999999999999998876665556555544333334

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=95.03  E-value=0.51  Score=56.05  Aligned_cols=130  Identities=22%  Similarity=0.264  Sum_probs=90.1

Q ss_pred             HhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC---c-----hhhHHHHHHHHHHHH
Q 002658          163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ---N-----FMAKASLLPVVGSLS  234 (896)
Q Consensus       163 ~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~---s-----~kaK~alL~aIgSLA  234 (896)
                      +..|++-+.+++...++..-..|..+|.       .  .+-|+.|+|+|+.++...   +     ...=..++..+.|+.
T Consensus       205 lQlYy~~It~a~~g~~~~~r~eAL~sL~-------T--DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl  275 (576)
T KOG2549|consen  205 LQLYYKEITEACTGSDEPLRQEALQSLE-------T--DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL  275 (576)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhhc-------c--CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh
Confidence            5678888888886666655555555442       1  145888999999888643   1     111123444555554


Q ss_pred             hcccc-CcccHHHHHHHHHHhhC----------CCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCCh
Q 002658          235 QVGAI-APQSLEPLLQSIHECLG----------STDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIK  301 (896)
Q Consensus       235 ~vga~-~~pyle~lLp~L~e~Ls----------ddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvK  301 (896)
                      .--.+ ..+|+-.+||+|+-|+-          |+.|.+|.-|+..+..|....++...-...++++.+...-.|..+
T Consensus       276 ~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~  353 (576)
T KOG2549|consen  276 DNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKK  353 (576)
T ss_pred             cCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCC
Confidence            43344 48999999999999853          346999999999999999999977666667777777666666544

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.02  E-value=0.61  Score=56.41  Aligned_cols=186  Identities=17%  Similarity=0.202  Sum_probs=121.1

Q ss_pred             hhHHHHHHH-HHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002658          116 THVTKIISH-IVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE  194 (896)
Q Consensus       116 P~LpkIL~~-IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE  194 (896)
                      +|-++-+.- ++.-..|.|+.||.+|.+++=+|..-+ +        ..........+.|.+.+..|-.+|...+--.-.
T Consensus       193 ~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-k--------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn  263 (823)
T KOG2259|consen  193 THDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF-K--------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGN  263 (823)
T ss_pred             cccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc-c--------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence            344444443 777788999999999999988888733 3        245566777788888888888877554433332


Q ss_pred             hcC--C----CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHH----------------------
Q 002658          195 CAS--D----PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLE----------------------  245 (896)
Q Consensus       195 ~a~--d----~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~~pyle----------------------  245 (896)
                      -.+  .    ......+...-+++..+.+-...+|..+-.++|.+-++. ....+-++                      
T Consensus       264 ~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s  343 (823)
T KOG2259|consen  264 RCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYS  343 (823)
T ss_pred             cCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHh
Confidence            221  1    111346667777777777777666665555666543222 11111111                      


Q ss_pred             ------------------------HHHH-----HHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhh
Q 002658          246 ------------------------PLLQ-----SIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACR  296 (896)
Q Consensus       246 ------------------------~lLp-----~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~R  296 (896)
                                              .++|     .+...|.|+-.++|++|.+.|+.||...+.    |...++.+|-..-
T Consensus       344 ~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMf  419 (823)
T KOG2259|consen  344 SGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMF  419 (823)
T ss_pred             cCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHh
Confidence                                    1222     133346667789999999999999999886    6677888887788


Q ss_pred             cCCChhhHHHHHHHHHHH
Q 002658          297 FDKIKPVRDSMNEALQLW  314 (896)
Q Consensus       297 fDKvKpVRDaA~eALe~W  314 (896)
                      .|.+..||--++-||-..
T Consensus       420 NDE~~~VRL~ai~aL~~I  437 (823)
T KOG2259|consen  420 NDEIEVVRLKAIFALTMI  437 (823)
T ss_pred             ccHHHHHHHHHHHHHHHH
Confidence            899998887766655443

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=94.99  E-value=2.2  Score=51.23  Aligned_cols=193  Identities=20%  Similarity=0.156  Sum_probs=101.5

Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHH
Q 002658           62 IEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACR  141 (896)
Q Consensus        62 a~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~  141 (896)
                      +..|-.++..++-++|..+...+....  .+...|+.-+-+|..+...      +-+..    |...+...+-.-- -+.
T Consensus       349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~------~av~~----i~~~I~~~~~~~~-ea~  415 (618)
T PF01347_consen  349 FSRLVRLLRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTN------PAVKF----IKDLIKSKKLTDD-EAA  415 (618)
T ss_dssp             HHHHHHHHTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SH------HHHHH----HHHHHHTT-S-HH-HHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCH------HHHHH----HHHHHHcCCCCHH-HHH
Confidence            677777888777656666666555322  3456677666666554331      12222    3333333221111 134


Q ss_pred             HHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh----cCCHhHHHHHHHHHHHHHHhc-CCC---------C----chh
Q 002658          142 DSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM----EQNKGVQSGAAMCMAKMVECA-SDP---------P----VVA  203 (896)
Q Consensus       142 ~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~----Eqnk~VQ~gAasALAkIIE~a-~d~---------~----~~y  203 (896)
                      ..+..|......|        -.+++.-|++.+.    ..++.+..+|+.+++.++... ...         .    ..|
T Consensus       416 ~~l~~l~~~~~~P--------t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~  487 (618)
T PF01347_consen  416 QLLASLPFHVRRP--------TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKY  487 (618)
T ss_dssp             HHHHHHHHT-------------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGG
T ss_pred             HHHHHHHhhcCCC--------CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHH
Confidence            5566666655333        2456666666662    457788899999999998753 221         1    235


Q ss_pred             HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHHHHhcchH
Q 002658          204 FQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGST---DWATRKAAADALSALALHSSNL  280 (896)
Q Consensus       204 L~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~Lsdd---DW~lRKaA~EaLgsLA~avGe~  280 (896)
                      ++.|...|.......+...+...|.+||=+   |      ....++.|..++.+.   ...+|.+|+.+|..++...++.
T Consensus       488 ~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~---g------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~  558 (618)
T PF01347_consen  488 VPYLEQELKEAVSRGDEEEKIVYLKALGNL---G------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK  558 (618)
T ss_dssp             THHHHHHHHHHHHTT-HHHHHHHHHHHHHH---T-------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH
T ss_pred             HHHHHHHHHHHhhccCHHHHHHHHHHhhcc---C------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH
Confidence            555555555555555556666667776654   2      113455555555554   5678888888888776666654


Q ss_pred             HHhh
Q 002658          281 VIDG  284 (896)
Q Consensus       281 L~Py  284 (896)
                      +.+.
T Consensus       559 v~~~  562 (618)
T PF01347_consen  559 VREI  562 (618)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=94.89  E-value=2.7  Score=47.19  Aligned_cols=189  Identities=13%  Similarity=0.233  Sum_probs=117.2

Q ss_pred             hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHH-HHHHHHHHHHHhcccch
Q 002658           37 AMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKE-SVRLLALVCELHSELTS  115 (896)
Q Consensus        37 ~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKe-AIllLG~IAeg~~d~I~  115 (896)
                      .+.-+|+.++..+...-++      +..++.+..++    +++++..++..-.+..|..|.. .+.+++++++..++.+.
T Consensus        39 ~lr~iKkeIL~Li~t~i~~------~~~~~~v~~~~----i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~  108 (319)
T PF08767_consen   39 LLRTIKKEILKLIETFISK------AEDPEEVANNF----IPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQ  108 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-------S-HHHHHHHT----HHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHhc------cCCHHHHHHHH----HHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhh
Confidence            4556666666666555211      11233333322    6777776653333345677766 77788889999889888


Q ss_pred             hhHHHHHHHHHHh----hcC---CChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHH
Q 002658          116 THVTKIISHIVKR----LKD---SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMC  188 (896)
Q Consensus       116 P~LpkIL~~Ilrr----LkD---pDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasA  188 (896)
                      ++++.|+..+...    +.+   .-|..|..--.-+..+..++..--..-..+.+..++..+.-++..++..+.+.++.+
T Consensus       109 ~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~  188 (319)
T PF08767_consen  109 PQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNI  188 (319)
T ss_dssp             CCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            9988888876655    333   238999999999999998875421111234566677777777778999999999999


Q ss_pred             HHHHHHhcCCCCc--------hhHHHHHHHHHHHhcCC----chhhHHHHHHHHHHHHh
Q 002658          189 MAKMVECASDPPV--------VAFQKLCARICKLLSNQ----NFMAKASLLPVVGSLSQ  235 (896)
Q Consensus       189 LAkIIE~a~d~~~--------~yL~~LlPRL~kLLks~----s~kaK~alL~aIgSLA~  235 (896)
                      |..+++.......        .|+-.++.-++.++-+.    .++....+|..+-.++.
T Consensus       189 l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve  247 (319)
T PF08767_consen  189 LLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVE  247 (319)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHH
Confidence            9999998633111        23445666666666554    23333344444444433

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.81  E-value=0.82  Score=56.20  Aligned_cols=203  Identities=13%  Similarity=0.193  Sum_probs=135.2

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc
Q 002658           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE  156 (896)
Q Consensus        77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~  156 (896)
                      ..+++.+|..-..+..-.+=-++.+++-.+....+..+.|    -++.+...|.-|.+.+|.++..+|-.+|.....   
T Consensus       243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~---  315 (865)
T KOG1078|consen  243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ---  315 (865)
T ss_pred             hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc---
Confidence            5566666666555544455556666666666655555666    677777888889999999999999999988732   


Q ss_pred             cCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 002658          157 ENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ  235 (896)
Q Consensus       157 e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~  235 (896)
                            ....+.+=++.| .+.|..+-.   .|++.+...-.+   .-++.|+-.+.....+-+-.-|-..+++|.++..
T Consensus       316 ------~v~~cN~elE~lItd~NrsIat---~AITtLLKTG~e---~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~  383 (865)
T KOG1078|consen  316 ------AVTVCNLDLESLITDSNRSIAT---LAITTLLKTGTE---SSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCL  383 (865)
T ss_pred             ------cccccchhHHhhhcccccchhH---HHHHHHHHhcch---hHHHHHHHHHHHHHHhccccceEEeHHHHHHHHh
Confidence                  222333333333 566766543   444444432211   2345566666665554333334467778887753


Q ss_pred             ccccCcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCCh
Q 002658          236 VGAIAPQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIK  301 (896)
Q Consensus       236 vga~~~pyle~lLp~L~e~Lsd-dDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvK  301 (896)
                         .|+---..+|..|...|.+ ....-+++.+|++..++...++.=.+-+..+..++|.|.|..+-
T Consensus       384 ---~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~  447 (865)
T KOG1078|consen  384 ---KFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIA  447 (865)
T ss_pred             ---hccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHH
Confidence               4555555677888887765 45788999999999999999876667788888999999988543

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=94.73  E-value=8.5  Score=46.61  Aligned_cols=97  Identities=20%  Similarity=0.309  Sum_probs=66.9

Q ss_pred             HHHcC-CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 002658           48 SLSKL-ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIV  126 (896)
Q Consensus        48 ~L~KL-sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~Il  126 (896)
                      +|.-. ++..+.+.|++-+-++...+|. .-..-+.++++-..+.+..+|+.||+.|-.+|...    ..|+++|.-++.
T Consensus        28 il~~~kg~~k~K~Laaq~I~kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~----~~~v~kvaDvL~  102 (556)
T PF05918_consen   28 ILDGVKGSPKEKRLAAQFIPKFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN----PEHVSKVADVLV  102 (556)
T ss_dssp             HHHGGGS-HHHHHHHHHHHHHHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHH
T ss_pred             HHHHccCCHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH----HHHHhHHHHHHH
Confidence            44434 6788999999999999998853 44455666666556788999999999998888753    457889999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHHHH
Q 002658          127 KRLKDSDSGMKEACRDSIGSLSK  149 (896)
Q Consensus       127 rrLkDpDs~VR~Ac~~aLG~LA~  149 (896)
                      +.|.-.++..+.++-++|..|..
T Consensus       103 QlL~tdd~~E~~~v~~sL~~ll~  125 (556)
T PF05918_consen  103 QLLQTDDPVELDAVKNSLMSLLK  125 (556)
T ss_dssp             HHTT---HHHHHHHHHHHHHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHHHHh
Confidence            99999998888888887744433

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=94.69  E-value=2.8  Score=46.92  Aligned_cols=192  Identities=18%  Similarity=0.169  Sum_probs=106.8

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc
Q 002658           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE  156 (896)
Q Consensus        77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~  156 (896)
                      +..|++++..   +.+.....+.+.+|+.........+.   +.++.++.++|+|..+.||.+-...+|.+..   ....
T Consensus        24 ~~~l~~~~~K---E~nE~aL~~~l~al~~~~~~~~~~~~---~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~---~~~~   94 (339)
T PF12074_consen   24 VQGLSPLLSK---ESNEAALSALLSALFKHLFFLSSELP---KKVVDAFKKGLKDKKPPVRRAWLLCLGEALW---ESPN   94 (339)
T ss_pred             HHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHhCcCCC---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh---hccC
Confidence            3444555542   34456667777777776665533333   6779999999999999999999999998876   1111


Q ss_pred             cCCchhHhhhHHHHHHHHh----cCCHhHHH---HHHHHHHHHHHhc---------------CCCCchhHHHHHHHHHHH
Q 002658          157 ENNGTVVGLFVKPLFEAMM----EQNKGVQS---GAAMCMAKMVECA---------------SDPPVVAFQKLCARICKL  214 (896)
Q Consensus       157 e~~~~~~~~lL~pL~eaL~----Eqnk~VQ~---gAasALAkIIE~a---------------~d~~~~yL~~LlPRL~kL  214 (896)
                      .........|+++|++.+.    .+.+.+|.   .+++++..+....               -+....+  .+=+|+..-
T Consensus        95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~--ll~~kvysk  172 (339)
T PF12074_consen   95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSF--LLSEKVYSK  172 (339)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcch--hcCHHHHhc
Confidence            1122446667778887773    33445552   2444444311100               0000011  122333333


Q ss_pred             hcCCchhhHHHHHHHHHHHHh-ccccCccc-HHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHhcchHH
Q 002658          215 LSNQNFMAKASLLPVVGSLSQ-VGAIAPQS-LEPLLQSIHECLGST--DWATRKAAADALSALALHSSNLV  281 (896)
Q Consensus       215 Lks~s~kaK~alL~aIgSLA~-vga~~~py-le~lLp~L~e~Lsdd--DW~lRKaA~EaLgsLA~avGe~L  281 (896)
                      |.+.  .--.-++.++-+++. ........ ...+-..++-++.+.  .|.+|+.|+++|..+....+..+
T Consensus       173 l~~~--~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l  241 (339)
T PF12074_consen  173 LASE--EDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELL  241 (339)
T ss_pred             cCCH--hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHH
Confidence            2111  111133444444432 11111111 345556666777777  89999999999999998888653

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=94.68  E-value=6.3  Score=44.83  Aligned_cols=114  Identities=16%  Similarity=0.196  Sum_probs=86.5

Q ss_pred             hHHHHHHHHHHHHHc--C------CChhHHHHHHHHHHHHHhcCC-CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002658           37 AMVEMKQKILTSLSK--L------ADRDTHQIAIEDLEKTIQTLS-QESLPMLLNCLYESSNDPKPAVKKESVRLLALVC  107 (896)
Q Consensus        37 ~~~~Lk~rll~~L~K--L------sDRDT~k~Aa~eLD~La~~L~-pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IA  107 (896)
                      -+|+|.|+....=..  +      .-|++...-+..|+++.+... ....++|++-|+--+-.++..++--+..-+|.+.
T Consensus        31 dlfeLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcil  110 (524)
T KOG4413|consen   31 DLFELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCIL  110 (524)
T ss_pred             ccchhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHH
Confidence            346777665443222  1      235566677888999888754 4458999999998887888899999999999999


Q ss_pred             HHhccc-chhhH----HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 002658          108 ELHSEL-TSTHV----TKIISHIVKRLKDSDSGMKEACRDSIGSLSKL  150 (896)
Q Consensus       108 eg~~d~-I~P~L----pkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~  150 (896)
                      |-|... +...+    ..|++.|+..+...|-.|-.|+.++|.+|+..
T Consensus       111 EdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf  158 (524)
T KOG4413|consen  111 EDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF  158 (524)
T ss_pred             hcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc
Confidence            998833 44433    46888899999999999999999999998754

>PF05536 Neurochondrin: Neurochondrin

Probab=94.61  E-value=6.4  Score=47.55  Aligned_cols=194  Identities=12%  Similarity=0.090  Sum_probs=128.8

Q ss_pred             HHHHHHhhhcCCCC-hhhHHHHHHHHHHHHHHhccc-c--hhhHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhc
Q 002658           79 MLLNCLYESSNDPK-PAVKKESVRLLALVCELHSEL-T--STHVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLN  153 (896)
Q Consensus        79 ~fLs~L~es~ss~k-~~vRKeAIllLG~IAeg~~d~-I--~P~LpkIL~~IlrrLkDpDs-~VR~Ac~~aLG~LA~~li~  153 (896)
                      .||.-|+.+...+. .......-+++..++..|.+. +  .|.+-.-+|.++..+...+. .+-.=|..++..++   ..
T Consensus        53 ~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia---s~  129 (543)
T PF05536_consen   53 KFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA---SS  129 (543)
T ss_pred             hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH---cC
Confidence            46666665543322 233344445556666666633 3  57788889999999988776 55555555555555   22


Q ss_pred             ccccCCchh--HhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC-C---CchhHHHHHHHHHHHhcCCchhhHHHHH
Q 002658          154 GKEENNGTV--VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD-P---PVVAFQKLCARICKLLSNQNFMAKASLL  227 (896)
Q Consensus       154 ~~~e~~~~~--~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d-~---~~~yL~~LlPRL~kLLks~s~kaK~alL  227 (896)
                      +.   +...  -...++.|++.+.. .+..++-|...|..++-.... .   ....+..+++++...+...+...|-.++
T Consensus       130 ~~---G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell  205 (543)
T PF05536_consen  130 PE---GAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELL  205 (543)
T ss_pred             cH---hHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence            11   1122  22367788888865 556667777777777766432 1   1235778999999999988777788889


Q ss_pred             HHHHHHHh-cc------ccCcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcch
Q 002658          228 PVVGSLSQ-VG------AIAPQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSSN  279 (896)
Q Consensus       228 ~aIgSLA~-vg------a~~~pyle~lLp~L~e~Lsd-dDW~lRKaA~EaLgsLA~avGe  279 (896)
                      ..++.+.. ..      ...+.....+...|..+|.+ ....-|..|+...+.|..+.|.
T Consensus       206 ~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~  265 (543)
T PF05536_consen  206 EFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGP  265 (543)
T ss_pred             HHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Confidence            99999853 21      12345666777778888877 3677899999999999999994

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=94.61  E-value=1.4  Score=56.67  Aligned_cols=175  Identities=13%  Similarity=0.107  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH----hcCCHhHH-HHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 002658          137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM----MEQNKGVQ-SGAAMCMAKMVECASDPPVVAFQKLCARI  211 (896)
Q Consensus       137 R~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL----~Eqnk~VQ-~gAasALAkIIE~a~d~~~~yL~~LlPRL  211 (896)
                      |.-|--++-.|+..+...-+    +..+.+-..|++.|    ..++..+- -..+.+++...+.   ...+ +-.++|++
T Consensus       750 rrgael~L~~l~~~fg~sl~----~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s---~l~~-~~~~l~~l  821 (1549)
T KOG0392|consen  750 RRGAELFLKILSKMFGGSLA----AKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHS---FLHP-LGSLLPRL  821 (1549)
T ss_pred             hhhHHHHHHHHHHHhhHHHH----HhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhh---hhhh-hhhhhhHH
Confidence            55666677777777622111    12223333344444    22222211 1233333333332   2222 56788999


Q ss_pred             HHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHH
Q 002658          212 CKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLT  290 (896)
Q Consensus       212 ~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~~~~I~  290 (896)
                      +.++.+.+.-+|.++..||+.++..+  ...-+..++..+...+.+-+.-.|+..++++..+..... -.+.||..=++.
T Consensus       822 ~~~~~s~~~a~r~~~ar~i~~~~k~~--~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~  899 (1549)
T KOG0392|consen  822 FFFVRSIHIAVRYAAARCIGTMFKSA--TRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVV  899 (1549)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehh
Confidence            99999999999999999999997644  111222333333344555556678888888777777777 667788888888


Q ss_pred             HHHhhhcCCChhhHHHHHHHHHHHHHhccCC
Q 002658          291 VLEACRFDKIKPVRDSMNEALQLWKKIAGKV  321 (896)
Q Consensus       291 ~LE~~RfDKvKpVRDaA~eALe~WK~la~~~  321 (896)
                      .|..+.-|.+..||+++.+++-...-+.+..
T Consensus       900 pllr~msd~~d~vR~aat~~fa~lip~~~le  930 (1549)
T KOG0392|consen  900 PLLRRMSDQIDSVREAATKVFAKLIPLLPLE  930 (1549)
T ss_pred             hhhcccccchHHHHHHHHHHHHHHhcccccc
Confidence            8889999999999999988888766666553

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=94.60  E-value=5.1  Score=47.97  Aligned_cols=219  Identities=18%  Similarity=0.149  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHH
Q 002658           59 QIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKE  138 (896)
Q Consensus        59 k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~  138 (896)
                      ...+..|-.+...++.++|..++..+.. ..   +..|+.-+-+|..+..      .+.+    .+|...++..+-.- .
T Consensus       310 ~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT------~~a~----~~i~~~i~~~~~~~-~  374 (574)
T smart00638      310 AAKFLRLVRLLRTLSEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGT------PPAL----KFIKQWIKNKKITP-L  374 (574)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCC------HHHH----HHHHHHHHcCCCCH-H
Confidence            3445566777777777777777777653 21   4555555555544332      1222    23333333333111 2


Q ss_pred             HHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc----CCHhHHHHHHHHHHHHHHh-cCCCC-------chhHHH
Q 002658          139 ACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME----QNKGVQSGAAMCMAKMVEC-ASDPP-------VVAFQK  206 (896)
Q Consensus       139 Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E----qnk~VQ~gAasALAkIIE~-a~d~~-------~~yL~~  206 (896)
                      -+...+..+...+..+        -.+++.-|++.+..    +.+.+..+|..+++.++.. +.+..       ..|++.
T Consensus       375 ea~~~~~~~~~~~~~P--------t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~  446 (574)
T smart00638      375 EAAQLLAVLPHTARYP--------TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKY  446 (574)
T ss_pred             HHHHHHHHHHHhhhcC--------CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence            3455566666666444        24577777777742    3566778899999988874 32221       234444


Q ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHH
Q 002658          207 LCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGAT  286 (896)
Q Consensus       207 LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~  286 (896)
                      |...|....+..+...+...|.+||=   +|  .+..+..+.|.+. .-......+|.+|+.+|..++...++.+.+.+-
T Consensus       447 l~~~l~~~~~~~~~~~~~~~LkaLGN---~g--~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~  520 (574)
T smart00638      447 LHELLQQAVSKGDEEEIQLYLKALGN---AG--HPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLL  520 (574)
T ss_pred             HHHHHHHHHhcCCchheeeHHHhhhc---cC--ChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            44444444444444434445555553   23  1212222333332 112245789999999999999888876665433


Q ss_pred             HHHHHHHhhhcCCChhhHHHHHHHH
Q 002658          287 STLTVLEACRFDKIKPVRDSMNEAL  311 (896)
Q Consensus       287 ~~I~~LE~~RfDKvKpVRDaA~eAL  311 (896)
                      ++   +.  ..+...+||=+|.-+|
T Consensus       521 ~i---~~--n~~e~~EvRiaA~~~l  540 (574)
T smart00638      521 PI---YL--NRAEPPEVRMAAVLVL  540 (574)
T ss_pred             HH---Hc--CCCCChHHHHHHHHHH
Confidence            33   32  2224445776654433

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=94.57  E-value=0.14  Score=49.05  Aligned_cols=125  Identities=15%  Similarity=0.118  Sum_probs=85.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC---CCc---------
Q 002658          134 SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD---PPV---------  201 (896)
Q Consensus       134 s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d---~~~---------  201 (896)
                      +.||...+.+++.|+.+..   +    +.|+.+++.++..+.. ++.........|..+.|+..+   ...         
T Consensus         2 ~~i~~kl~~~l~~i~~~~~---P----~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~   73 (148)
T PF08389_consen    2 PFIRNKLAQVLAEIAKRDW---P----QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELK   73 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHT---T----TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHC---h----hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHH
Confidence            4678888899999988873   1    4599999999999875 577777888899999988632   111         


Q ss_pred             ----hhHHHHHHHHHHHhcCCc----hhhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002658          202 ----VAFQKLCARICKLLSNQN----FMAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADAL  270 (896)
Q Consensus       202 ----~yL~~LlPRL~kLLks~s----~kaK~alL~aIgSLA~vg--a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaL  270 (896)
                          ..++.++.-+.++|....    ......+|.|+++.+.-.  ..+..  ..+++.++++|.+++  +|.+|+|||
T Consensus        74 ~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l~~~~--~~~~A~~cl  148 (148)
T PF08389_consen   74 DALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLLQSPE--LREAAAECL  148 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHcCCHH--HHHHHHHhC
Confidence                113445555555555432    455668888888886522  11111  137888888886655  489999987

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.54  E-value=8.4  Score=48.14  Aligned_cols=243  Identities=15%  Similarity=0.186  Sum_probs=137.4

Q ss_pred             CChhHHHHHHHHHHHHHh--------cCCCCCHHHH----HHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHH
Q 002658           53 ADRDTHQIAIEDLEKTIQ--------TLSQESLPML----LNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTK  120 (896)
Q Consensus        53 sDRDT~k~Aa~eLD~La~--------~L~pd~Lp~f----Ls~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~Lpk  120 (896)
                      ..+-.+..|+-.++++..        .+.++.+++|    |..|..+.+.+....-+.-++++-.+.....+.+.||.+.
T Consensus       510 ~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~  589 (960)
T KOG1992|consen  510 ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPE  589 (960)
T ss_pred             cchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhH
Confidence            356688999999998864        1234455553    4444444433333333334444444444455555555554


Q ss_pred             HHHHH----HHhhcCC-ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHH
Q 002658          121 IISHI----VKRLKDS-DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVE  194 (896)
Q Consensus       121 IL~~I----lrrLkDp-Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE  194 (896)
                      ++..+    ...-+.| +|..-+-.-+++|.+.....+.+.... ..|..-|-|+|+.+ .+.-...--.++.-|+-++|
T Consensus       590 ~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~v-s~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve  668 (960)
T KOG1992|consen  590 LLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAV-SSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVE  668 (960)
T ss_pred             HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44433    3334555 456667777889988888854321111 22444444555555 33333344467888899999


Q ss_pred             hcCCCCchhHHHHHHHHHHHhcCCchhhH---HHHHHHHHHHHhcc-ccCc--ccHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002658          195 CASDPPVVAFQKLCARICKLLSNQNFMAK---ASLLPVVGSLSQVG-AIAP--QSLEPLLQSIHECLGSTDWATRKAAAD  268 (896)
Q Consensus       195 ~a~d~~~~yL~~LlPRL~kLLks~s~kaK---~alL~aIgSLA~vg-a~~~--pyle~lLp~L~e~LsddDW~lRKaA~E  268 (896)
                      .....+.+.+-.|+|   .+|.-.--+.+   ++++.++.+++..| ..+.  ..+..++..+.....+...+  -...+
T Consensus       669 ~~~~~ip~~~~~l~~---~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~D--h~GF~  743 (960)
T KOG1992|consen  669 HSSGTIPDSYSPLFP---PLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKAND--HHGFY  743 (960)
T ss_pred             hcCCCCchhHHHHHH---HhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccc--hhHHH
Confidence            864432222222222   22222222222   37788888888877 4444  45667777777766542211  23567


Q ss_pred             HHHHHHHhcc-hHHHhhHHHHHHH-HHhhhcCCCh
Q 002658          269 ALSALALHSS-NLVIDGATSTLTV-LEACRFDKIK  301 (896)
Q Consensus       269 aLgsLA~avG-e~L~Py~~~~I~~-LE~~RfDKvK  301 (896)
                      .|..|...++ ..+.||+..+... ++..+.-|.+
T Consensus       744 LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~  778 (960)
T KOG1992|consen  744 LLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTE  778 (960)
T ss_pred             HHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcH
Confidence            8888888888 7789999999764 4555555655

>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans

Probab=94.51  E-value=0.86  Score=49.47  Aligned_cols=169  Identities=14%  Similarity=0.211  Sum_probs=120.2

Q ss_pred             hhhHHHHHHHHHHHHHHhc-------cc-chhhHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHHhcccccCCchhH
Q 002658           93 PAVKKESVRLLALVCELHS-------EL-TSTHVTKIISHIVKRLKDS-DSGMKEACRDSIGSLSKLYLNGKEENNGTVV  163 (896)
Q Consensus        93 ~~vRKeAIllLG~IAeg~~-------d~-I~P~LpkIL~~IlrrLkDp-Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~  163 (896)
                      |..=|++-.+|+.+++.+.       .. -..++.+|-.+++..|..- ...+=.++..++..+++.+...........-
T Consensus        61 Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP  140 (255)
T PF10350_consen   61 WRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELP  140 (255)
T ss_pred             HHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhH
Confidence            6667899999999997652       12 3567888888888877654 3466778888899999999743221122334


Q ss_pred             hhhHHHHHHHHhcCCH------hHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCch--------hhHHHHHHH
Q 002658          164 GLFVKPLFEAMMEQNK------GVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNF--------MAKASLLPV  229 (896)
Q Consensus       164 ~~lL~pL~eaL~Eqnk------~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~--------kaK~alL~a  229 (896)
                      ...|..+++.+..++.      +=-+|--.++.+++...+....+.|+..+.+|+++.+.+..        -.+.+++++
T Consensus       141 ~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNi  220 (255)
T PF10350_consen  141 EEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNI  220 (255)
T ss_pred             HHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHH
Confidence            4466677777754411      11256777888888775443337899999999999998754        356788999


Q ss_pred             HHHHHh---ccccCcccHHHHHHHHHHhhCCCCHH
Q 002658          230 VGSLSQ---VGAIAPQSLEPLLQSIHECLGSTDWA  261 (896)
Q Consensus       230 IgSLA~---vga~~~pyle~lLp~L~e~LsddDW~  261 (896)
                      +.+|+.   .+....+|++..+..-++.+.+++|.
T Consensus       221 Lr~if~ds~L~~~~~~yi~~~l~lai~~f~s~~Wa  255 (255)
T PF10350_consen  221 LRAIFRDSKLSEDVSPYIEDALILAIKGFSSPDWA  255 (255)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence            999873   23567889999999999999999884

Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.48  E-value=0.66  Score=51.94  Aligned_cols=148  Identities=13%  Similarity=0.172  Sum_probs=100.8

Q ss_pred             hHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHH
Q 002658          166 FVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLE  245 (896)
Q Consensus       166 lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle  245 (896)
                      ++..+...|....-.|-.+||+|++.+.+...+.+..-++.++-.|..--...+--+++.+..++.++...  ..   -.
T Consensus       130 vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~--vt---p~  204 (334)
T KOG2933|consen  130 VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNH--VT---PQ  204 (334)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc--cC---hH
Confidence            33344444433344567789999999999875544333333332222211222333577777777777531  11   12


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658          246 PLLQSIHECLGSTDWATRKAAADALSALALHSS--NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA  318 (896)
Q Consensus       246 ~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG--e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la  318 (896)
                      .+++.|+.++......+|..++-|+......+|  ....+|....+..+...-.|+...+|+++.-++.-.+.+-
T Consensus       205 ~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~v~  279 (334)
T KOG2933|consen  205 KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQGSDKLPELREAARFVRLELKEVL  279 (334)
T ss_pred             HHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhhcccccccccchhHHHHhHHHHH
Confidence            577888888999899999999999988777777  7777888899999999999999989988777766666554

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=94.45  E-value=0.71  Score=59.12  Aligned_cols=176  Identities=11%  Similarity=0.177  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHH
Q 002658           57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM  136 (896)
Q Consensus        57 T~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~V  136 (896)
                      .+..-++.|..+..++.+..+-.++.++......+.|..|.-.++.+........+.+...+++++.+++..|.|.+-.|
T Consensus       145 Vre~caq~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv  224 (1549)
T KOG0392|consen  145 VREACAQALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDV  224 (1549)
T ss_pred             hHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHH
Confidence            34555677888888888878888888888877777999999999999988888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHH---HHHHHHHHHHhcC--CCCc-hhH-HHHHH
Q 002658          137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSG---AAMCMAKMVECAS--DPPV-VAF-QKLCA  209 (896)
Q Consensus       137 R~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~g---AasALAkIIE~a~--d~~~-~yL-~~LlP  209 (896)
                      |..++.++..++....+-..    ..+..++..|...|.+=.- .-.+   ...-|+++|-...  +... .-+ ..|+|
T Consensus       225 ~~~aa~~l~~~~s~~v~l~~----~~i~~lv~~l~~~l~~ldd-l~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp  299 (1549)
T KOG0392|consen  225 RSVAAQFLVPAPSIQVKLMV----QKIAKLVHTLWSFLLELDD-LSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVP  299 (1549)
T ss_pred             HHHHHHHhhhhhHHHHhhhH----hHHHHHHHHHHHHHHHhhh-cchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccch
Confidence            99999988777776643221    2244444444444421111 1111   1111222222110  0000 012 36899


Q ss_pred             HHHHHhcCCchhhHHHHHHHHHHHHhcc
Q 002658          210 RICKLLSNQNFMAKASLLPVVGSLSQVG  237 (896)
Q Consensus       210 RL~kLLks~s~kaK~alL~aIgSLA~vg  237 (896)
                      ++...+.|.-+.++.++++.+-.+..+.
T Consensus       300 ~~~p~l~~~i~sv~~a~l~~l~~lle~~  327 (1549)
T KOG0392|consen  300 RLWPFLRHTISSVRRAALETLAMLLEAD  327 (1549)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999998886554

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.19  E-value=6.7  Score=48.81  Aligned_cols=212  Identities=12%  Similarity=0.122  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHcC-CCh-h--HHHHHHHHHHHHHhc--CCCCCHHHHHHHHhhhc-----CCCChhhHHHHHHHHHHHH
Q 002658           39 VEMKQKILTSLSKL-ADR-D--THQIAIEDLEKTIQT--LSQESLPMLLNCLYESS-----NDPKPAVKKESVRLLALVC  107 (896)
Q Consensus        39 ~~Lk~rll~~L~KL-sDR-D--T~k~Aa~eLD~La~~--L~pd~Lp~fLs~L~es~-----ss~k~~vRKeAIllLG~IA  107 (896)
                      .++|..+..++.++ .|. |  ++=.+++.|..++..  +.++.|-+|++.+....     .-..-..|-..+.+|+.+.
T Consensus       521 ~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI  600 (978)
T KOG1993|consen  521 LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLI  600 (978)
T ss_pred             HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            35555555555555 444 2  666777888888875  45767777776655442     1112335778899999999


Q ss_pred             HHhcccchhhHHHHHHHHHHh--hcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcC-CHhHH--
Q 002658          108 ELHSELTSTHVTKIISHIVKR--LKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ-NKGVQ--  182 (896)
Q Consensus       108 eg~~d~I~P~LpkIL~~Ilrr--LkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eq-nk~VQ--  182 (896)
                      +.-++.|.||..+|+.++-..  -...++.+|.|...++-.|+.-+-..    ....++ |+-|+++.-.+. .|..+  
T Consensus       601 ~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~q----S~~~~~-fL~pVIel~~D~~sP~hv~L  675 (978)
T KOG1993|consen  601 ERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQ----SFEFYP-FLYPVIELSTDPSSPEHVYL  675 (978)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccC----CccchH-HHHHHHHHhcCCCCCceeeh
Confidence            999999999999999977554  34467899999999999999999322    223454 555666665443 34333  


Q ss_pred             -HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh--ccccCcccHHHHHHHHHHhhCC
Q 002658          183 -SGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ--VGAIAPQSLEPLLQSIHECLGS  257 (896)
Q Consensus       183 -~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~--vga~~~pyle~lLp~L~e~Lsd  257 (896)
                       +-+..-...++++.+.. .|-|-.|+|.|..++....... ..++..|.|-+-  .+.....|+..+...+.+.+.+
T Consensus       676 ~EDgmeLW~~~L~n~~~l-~p~ll~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~d  751 (978)
T KOG1993|consen  676 LEDGMELWLTTLMNSQKL-TPELLLLFPHLLYIIEQSTENL-PTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDD  751 (978)
T ss_pred             hhhHHHHHHHHHhccccc-CHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence             44555566777776443 3445567788887776433322 245666666642  1233456666666666665554

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=94.18  E-value=1.7  Score=47.81  Aligned_cols=136  Identities=10%  Similarity=0.068  Sum_probs=95.7

Q ss_pred             CchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC---c---hhHHHHHHHHHHHhc--------CCchhhHH
Q 002658          159 NGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP---V---VAFQKLCARICKLLS--------NQNFMAKA  224 (896)
Q Consensus       159 ~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~---~---~yL~~LlPRL~kLLk--------s~s~kaK~  224 (896)
                      .+++|+.++|+++..+++..+.+..-+|.||..+++..+...   .   .+.+-+-+-|.++|-        ......=.
T Consensus       113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~  192 (282)
T PF10521_consen  113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQ  192 (282)
T ss_pred             HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHH
Confidence            457899999999999999999999999999999999875444   1   234444455555555        23444445


Q ss_pred             HHHHHHHHHHhcc--ccCcccHHHHHHH----HHHhhCC----CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHh
Q 002658          225 SLLPVVGSLSQVG--AIAPQSLEPLLQS----IHECLGS----TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEA  294 (896)
Q Consensus       225 alL~aIgSLA~vg--a~~~pyle~lLp~----L~e~Lsd----dDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~  294 (896)
                      .++.|+-+++.+-  ....++...+-..    ++..+..    +...+|...++.|..+...+|-...-|+.+++..|.+
T Consensus       193 ~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~  272 (282)
T PF10521_consen  193 AAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQ  272 (282)
T ss_pred             HHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            7788888886542  2222333333333    3332221    2589999999999999999998888899999988764

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.10  E-value=0.53  Score=54.10  Aligned_cols=135  Identities=17%  Similarity=0.192  Sum_probs=108.8

Q ss_pred             HHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCC
Q 002658           80 LLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENN  159 (896)
Q Consensus        80 fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~  159 (896)
                      .|.-|+..+.+.+..+|+.|+.-|..+...|+..+.-|+-.+++-+..++.|-+..||++....+--+...+..   +..
T Consensus        59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~---e~~  135 (393)
T KOG2149|consen   59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACK---EDQ  135 (393)
T ss_pred             cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcch---hhh
Confidence            36666677778999999999999999999999999999999999999999999999999999888877777732   224


Q ss_pred             chhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC
Q 002658          160 GTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSN  217 (896)
Q Consensus       160 ~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks  217 (896)
                      +.++..+++-+..+|..-.+.+|+-++.-|.-+++..++....+.-.+++-+..+++.
T Consensus       136 sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~  193 (393)
T KOG2149|consen  136 SPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISK  193 (393)
T ss_pred             cchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            4667888888888888889999999999999999987665444444455555544443

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.04  E-value=2.1  Score=48.75  Aligned_cols=175  Identities=14%  Similarity=0.180  Sum_probs=117.7

Q ss_pred             HHHHHHcC-CChhHHHHHHHHHHHHHhcCCCC-------CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc---
Q 002658           45 ILTSLSKL-ADRDTHQIAIEDLEKTIQTLSQE-------SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL---  113 (896)
Q Consensus        45 ll~~L~KL-sDRDT~k~Aa~eLD~La~~L~pd-------~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~---  113 (896)
                      ....++.. .|-+.+.-|++.|.-++++++..       .+.+++.    ..++.++.+|+.|...+|.++.--+..   
T Consensus        86 ~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~----~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~  161 (342)
T KOG2160|consen   86 PIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG----YLENSDAELRELAARVIGTAVQNNPKSQEQ  161 (342)
T ss_pred             hhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH----HhcCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            45556655 58889999999999999987531       1333333    556788999999999999999876543   


Q ss_pred             c--hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhh-----HHHHHHHHhc--CCHhHHHH
Q 002658          114 T--STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLF-----VKPLFEAMME--QNKGVQSG  184 (896)
Q Consensus       114 I--~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~l-----L~pL~eaL~E--qnk~VQ~g  184 (896)
                      +  .-.|.+++..+.   +|.+-.||..+..+++.|.++- .++       ...|     ..-|.++|..  .++..|.-
T Consensus       162 v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~-~~g-------~~~fl~~~G~~~L~~vl~~~~~~~~lkrK  230 (342)
T KOG2160|consen  162 VIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNN-KPG-------QDEFLKLNGYQVLRDVLQSNNTSVKLKRK  230 (342)
T ss_pred             HHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcC-cHH-------HHHHHhcCCHHHHHHHHHcCCcchHHHHH
Confidence            2  124555555443   4555688899999999988877 322       1222     3467777866  56778888


Q ss_pred             HHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHH
Q 002658          185 AAMCMAKMVECASDPPVVAFQKLCARICKLLSN-QNFMAKASLLPVVGSLS  234 (896)
Q Consensus       185 AasALAkIIE~a~d~~~~yL~~LlPRL~kLLks-~s~kaK~alL~aIgSLA  234 (896)
                      |+.-++.+++.........-..+.++....+.. .++.++..++.++.++.
T Consensus       231 ~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l  281 (342)
T KOG2160|consen  231 ALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL  281 (342)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence            888899999875322222333455555555543 46677778888777765

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.02  E-value=1.4  Score=52.69  Aligned_cols=165  Identities=13%  Similarity=0.103  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHcC----CChh-----------HHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHH
Q 002658           38 MVEMKQKILTSLSKL----ADRD-----------THQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVR  101 (896)
Q Consensus        38 ~~~Lk~rll~~L~KL----sDRD-----------T~k~Aa~eLD~La~~L~pd~-Lp~fLs~L~es~ss~k~~vRKeAIl  101 (896)
                      -....+|++.+|-.-    +|++           .+--..+.|.-++--++.+. +.....-+.+  ++..|..=++++.
T Consensus       334 frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF  411 (559)
T KOG2081|consen  334 FRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALF  411 (559)
T ss_pred             hHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHH
Confidence            345667777777332    2222           33334444444444455433 4444444443  4567999999999


Q ss_pred             HHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH--hcCCH
Q 002658          102 LLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM--MEQNK  179 (896)
Q Consensus       102 lLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL--~Eqnk  179 (896)
                      .|.+++.-....-.+-||+|+..|.+.  +....||.+++-.+|.|.+|+-         .+++++.++.+.+  +-+.+
T Consensus       412 ~l~~~~~~~~~~e~~i~pevl~~i~nl--p~Q~~~~~ts~ll~g~~~ew~~---------~~p~~le~v~~~~~~~~~~~  480 (559)
T KOG2081|consen  412 ILRAVAKNVSPEENTIMPEVLKLICNL--PEQAPLRYTSILLLGEYSEWVE---------QHPELLEPVLRYIRQGLQLK  480 (559)
T ss_pred             HHHHHhccCCccccchHHHHHHHHhCC--ccchhHHHHHHHHHHHHHHHHH---------hCcHHHHHHHHHHHHHhhhc
Confidence            998888654444444455555544332  1234599999999999999993         3566777777666  23445


Q ss_pred             hHHHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHh
Q 002658          180 GVQSGAAMCMAKMVECASDPP---VVAFQKLCARICKLL  215 (896)
Q Consensus       180 ~VQ~gAasALAkIIE~a~d~~---~~yL~~LlPRL~kLL  215 (896)
                      ..+.+|+.|+..+|..+....   .+++..|+--|...+
T Consensus       481 ~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~  519 (559)
T KOG2081|consen  481 RLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQ  519 (559)
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence            589999999999998864433   244444444444333

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=93.92  E-value=6.9  Score=43.24  Aligned_cols=131  Identities=15%  Similarity=0.154  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHhcccchh--hHHHHHHHHH-HhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh
Q 002658           99 SVRLLALVCELHSELTST--HVTKIISHIV-KRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM  175 (896)
Q Consensus        99 AIllLG~IAeg~~d~I~P--~LpkIL~~Il-rrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~  175 (896)
                      |+..+..+.+-....+.|  .|..|+..|+ +.++.+++.||..+..++|-++-.-.        +.....++.++..+.
T Consensus         3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--------~~a~~~l~l~~~~~~   74 (298)
T PF12719_consen    3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--------ELAKEHLPLFLQALQ   74 (298)
T ss_pred             HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--------HHHHHHHHHHHHHHH
Confidence            444555555555544544  5668886555 99999999999999999997765441        335566777777775


Q ss_pred             cCCHhHHHHHHHHHHHHHHhcCCCCc---------hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc
Q 002658          176 EQNKGVQSGAAMCMAKMVECASDPPV---------VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG  237 (896)
Q Consensus       176 Eqnk~VQ~gAasALAkIIE~a~d~~~---------~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg  237 (896)
                      .....++..|+.|+--++---+....         ..-..++.-|.+.|.+.+..++..+...+.-+.-.|
T Consensus        75 ~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~  145 (298)
T PF12719_consen   75 KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG  145 (298)
T ss_pred             hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence            55888998887777666543221111         123467778888888888788888888888876544

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=93.91  E-value=2.7  Score=49.45  Aligned_cols=222  Identities=15%  Similarity=0.190  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHH-HHhhhcCCCChhhHHHHHHHHHHHHHHhccc-chhhHHHHHHHHHHhhcCCC-
Q 002658           57 THQIAIEDLEKTIQTLSQESLPMLLN-CLYESSNDPKPAVKKESVRLLALVCELHSEL-TSTHVTKIISHIVKRLKDSD-  133 (896)
Q Consensus        57 T~k~Aa~eLD~La~~L~pd~Lp~fLs-~L~es~ss~k~~vRKeAIllLG~IAeg~~d~-I~P~LpkIL~~IlrrLkDpD-  133 (896)
                      ++-.|+..|=.+...++.+.+..++. .|...+++.-...|-.+.+++..-+..+... ..+..+.+.+.+...|.++. 
T Consensus       103 ~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~~~  182 (441)
T PF12054_consen  103 ARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENPEP  182 (441)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCCCC
Confidence            56678888888888887666767766 4777777877888888888888888877644 22224555666666666443 


Q ss_pred             ----------hHHHHHHHHHHHHHHHHHh-------------c--cc---------------------------------
Q 002658          134 ----------SGMKEACRDSIGSLSKLYL-------------N--GK---------------------------------  155 (896)
Q Consensus       134 ----------s~VR~Ac~~aLG~LA~~li-------------~--~~---------------------------------  155 (896)
                                ..||.-|...+..+..+..             +  +.                                 
T Consensus       183 ~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~~~k~~  262 (441)
T PF12054_consen  183 PYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSPSQKLS  262 (441)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCCcccch
Confidence                      3556666666666666554             1  00                                 


Q ss_pred             ----------------------------------------ccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHH
Q 002658          156 ----------------------------------------EENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVE  194 (896)
Q Consensus       156 ----------------------------------------~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE  194 (896)
                                                              +....+.+..+++||++.+ .|.|...|.-||.+|+.+|+
T Consensus       263 a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~  342 (441)
T PF12054_consen  263 ALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDSIKREENELLQQRSAESLARLIQ  342 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence                                                    0000023677888888888 68899999999999999998


Q ss_pred             hcCCCCchhHHHHHHHHHHHhcC-----CchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002658          195 CASDPPVVAFQKLCARICKLLSN-----QNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADA  269 (896)
Q Consensus       195 ~a~d~~~~yL~~LlPRL~kLLks-----~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~Ea  269 (896)
                      -+-..-..--++|+-.|+.+|=.     |.|.......+-|-++..-..... ..   ...-.+--...-.=.|+.|..+
T Consensus       343 ~~~~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~~-~~---~~~~~~~~~~~a~I~RrGA~~a  418 (441)
T PF12054_consen  343 LCVDRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDKAD-HA---DAASEEREQKEARIQRRGAELA  418 (441)
T ss_pred             HHhCCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhccccc-cc---ccccchhhhhhhHHHhcCHHHH
Confidence            75432223456777777777732     233322223333444432110000 00   0000000111123368899999


Q ss_pred             HHHHHHhcchHHH
Q 002658          270 LSALALHSSNLVI  282 (896)
Q Consensus       270 LgsLA~avGe~L~  282 (896)
                      |..|+...|+.+-
T Consensus       419 L~~l~~~FG~~Lf  431 (441)
T PF12054_consen  419 LEQLAKRFGSSLF  431 (441)
T ss_pred             HHHHHHHHhHHHH
Confidence            9999999995443

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=93.87  E-value=1.8  Score=48.54  Aligned_cols=212  Identities=14%  Similarity=0.167  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC----HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccc
Q 002658           39 VEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES----LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT  114 (896)
Q Consensus        39 ~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~----Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I  114 (896)
                      ..+=+|+-+||+-.-=.-.++-|++.-+.|-+.++++.    ++.|++-|+..++.....+|...+.++....---+..+
T Consensus        53 ~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L  132 (307)
T PF04118_consen   53 LQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPAL  132 (307)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHH
Confidence            34567888999766323388889998888888887544    77777777777777778899999999988877666778


Q ss_pred             hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002658          115 STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE  194 (896)
Q Consensus       115 ~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE  194 (896)
                      .|.++-++..++.+|.|..+.+-+-+...+-.+...+   +       -..|...|+.++. .++.+-.+|..-|.+-.-
T Consensus       133 ~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v---~-------~~~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~  201 (307)
T PF04118_consen  133 RPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAV---G-------DKYFWQCLWLCII-TSPSRRLGALNYLLRRLP  201 (307)
T ss_pred             HHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhc---C-------hhHHHHHHHHHHh-cCcchhHHHHHHHHHhCC
Confidence            9999999999999999999999999999999998887   2       1246677777775 455555444443333222


Q ss_pred             hcC------------CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-c-----cCcccHHHHHHHHHHhhC
Q 002658          195 CAS------------DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-A-----IAPQSLEPLLQSIHECLG  256 (896)
Q Consensus       195 ~a~------------d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a-----~~~pyle~lLp~L~e~Ls  256 (896)
                      ...            ....+--.-|+.-|+..|++.+.-++-..|+.+-+-.... .     ........++......+-
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~PL~s~~~~~~~~~~d~~~Lv~a~l~~~l  281 (307)
T PF04118_consen  202 KFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFPLDSPVLQSLLSPEDKELLVMAALKVVL  281 (307)
T ss_pred             cccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCCCCCcchhhhCCHHHHHHHHHHHHHHHh
Confidence            111            0001113347777888888888888888888877765433 1     124444455544444443


Q ss_pred             CCCHH
Q 002658          257 STDWA  261 (896)
Q Consensus       257 ddDW~  261 (896)
                      -.|+.
T Consensus       282 rrDmS  286 (307)
T PF04118_consen  282 RRDMS  286 (307)
T ss_pred             Hhhhh
Confidence            34443

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=93.72  E-value=1.8  Score=47.60  Aligned_cols=158  Identities=13%  Similarity=0.177  Sum_probs=106.2

Q ss_pred             HHHHHHHHHhc--ccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc---ccCCchhHhhhHHHHHHHHh
Q 002658          101 RLLALVCELHS--ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK---EENNGTVVGLFVKPLFEAMM  175 (896)
Q Consensus       101 llLG~IAeg~~--d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~---~e~~~~~~~~lL~pL~eaL~  175 (896)
                      ..|.-++..+-  ..+..|++-|+|.|+..+-|.++.+|-..|.++..|...+....   .. .......|-+.|+..|.
T Consensus        98 ~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~-~tGl~~v~~~al~~~L~  176 (282)
T PF10521_consen   98 HVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILR-RTGLFSVFEDALFPCLY  176 (282)
T ss_pred             HHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHH-HcChHHHHHHHHHHHhh
Confidence            45555555333  34889999999999999999999999999999999998772211   00 00124444555555554


Q ss_pred             --------cCCHhHHHHHHHHHHHHHHhcCC-CC---chhHHHHHHH-HHHHhcCC----chhhHHHHHHHHHHHHh-cc
Q 002658          176 --------EQNKGVQSGAAMCMAKMVECASD-PP---VVAFQKLCAR-ICKLLSNQ----NFMAKASLLPVVGSLSQ-VG  237 (896)
Q Consensus       176 --------Eqnk~VQ~gAasALAkIIE~a~d-~~---~~yL~~LlPR-L~kLLks~----s~kaK~alL~aIgSLA~-vg  237 (896)
                              ++...+...|.-||..++..... ..   ...+.+++-. ++.-+.+.    +..+...++..+..++. .|
T Consensus       177 ~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG  256 (282)
T PF10521_consen  177 YLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG  256 (282)
T ss_pred             cCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc
Confidence                    45667777888888888765311 11   1234444433 44444432    46667788888888864 56


Q ss_pred             ccCcccHHHHHHHHHHhhCCCC
Q 002658          238 AIAPQSLEPLLQSIHECLGSTD  259 (896)
Q Consensus       238 a~~~pyle~lLp~L~e~LsddD  259 (896)
                      -....|+..++|.|.+.+.+.+
T Consensus       257 i~~~~hL~rii~~l~~~l~npf  278 (282)
T PF10521_consen  257 ISSVKHLQRIIPVLSQILENPF  278 (282)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCC
Confidence            5667899999999999988754

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=93.58  E-value=1.2  Score=49.51  Aligned_cols=216  Identities=13%  Similarity=0.103  Sum_probs=118.6

Q ss_pred             HHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHH-------HHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 002658           78 PMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT-------KIISHIVKRLKDSDSGMKEACRDSIGSLSKL  150 (896)
Q Consensus        78 p~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~Lp-------kIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~  150 (896)
                      ..|+..|...  +.+..+.+..+-+++.+....+....-++.       .....+++.|.-+|..+...++..++.|+.+
T Consensus        58 ~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   58 SLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             ----HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence            3444444433  456778888888888888877644221111       2556677788889999999999999999888


Q ss_pred             HhcccccCCchhHhhhHHHHHHHHhc----CCHhHHHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHHHh------c-C
Q 002658          151 YLNGKEENNGTVVGLFVKPLFEAMME----QNKGVQSGAAMCMAKMVECA--SDPPVVAFQKLCARICKLL------S-N  217 (896)
Q Consensus       151 li~~~~e~~~~~~~~lL~pL~eaL~E----qnk~VQ~gAasALAkIIE~a--~d~~~~yL~~LlPRL~kLL------k-s  217 (896)
                      .....    ......+++.++..|..    .+..+|..|+.||+.+...-  +.....  ...++.|..+|      . .
T Consensus       136 ~~~~~----~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~~~~  209 (312)
T PF03224_consen  136 GPKRS----EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATNSNS  209 (312)
T ss_dssp             TTT------HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH--------
T ss_pred             CCccc----cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhcccCCC
Confidence            73221    12224678888888854    34567889999999998642  111111  35666667777      2 2


Q ss_pred             CchhhHHHHHHHHHHHH-h---ccccCcccHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHhcchHHHhh-----HHH
Q 002658          218 QNFMAKASLLPVVGSLS-Q---VGAIAPQSLEPLLQSIHECLGST-DWATRKAAADALSALALHSSNLVIDG-----ATS  287 (896)
Q Consensus       218 ~s~kaK~alL~aIgSLA-~---vga~~~pyle~lLp~L~e~Lsdd-DW~lRKaA~EaLgsLA~avGe~L~Py-----~~~  287 (896)
                      .+++..-.++-|+=-+. .   ++.....|   ++|.|.+.+... .-.+=+.++-+|..++....+.+.+-     +..
T Consensus       210 ~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~  286 (312)
T PF03224_consen  210 SGIQLQYQALLCLWLLSFEPEIAEELNKKY---LIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLK  286 (312)
T ss_dssp             -HHHHHHHHHHHHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHH
T ss_pred             CchhHHHHHHHHHHHHhcCHHHHHHHhccc---hHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHH
Confidence            35555555555555442 1   11222334   888888887653 22344455666777766666434433     345


Q ss_pred             HHHHHHhhhcCCChhhHH
Q 002658          288 TLTVLEACRFDKIKPVRD  305 (896)
Q Consensus       288 ~I~~LE~~RfDKvKpVRD  305 (896)
                      +++.|+..++ .++.+.|
T Consensus       287 ~l~~L~~rk~-~Dedl~e  303 (312)
T PF03224_consen  287 TLQNLSERKW-SDEDLTE  303 (312)
T ss_dssp             HHHHHHSS---SSHHHHH
T ss_pred             HHHHHhcCCC-CCHHHHH
Confidence            5666666666 4443443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=93.55  E-value=2.8  Score=49.49  Aligned_cols=270  Identities=16%  Similarity=0.140  Sum_probs=160.9

Q ss_pred             CcchhhhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC-----HHHHHHHHhhhcCCCChhhHHHHHHHH
Q 002658           29 SSSLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES-----LPMLLNCLYESSNDPKPAVKKESVRLL  103 (896)
Q Consensus        29 ~~~~s~~~~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~-----Lp~fLs~L~es~ss~k~~vRKeAIllL  103 (896)
                      +-+.+..-...++-+-++.+|..=....+-.+.+..|..+++.-|=++     +--|..+|...+.+.++.+|-.++.++
T Consensus        95 pf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~  174 (728)
T KOG4535|consen   95 PFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLL  174 (728)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHH
Confidence            455566666778888888888666556688888889999988654333     334456666667888999999999999


Q ss_pred             HHHHHHhcccc----------------hhhHHHHHHHHHHhhcCCC----------------------------------
Q 002658          104 ALVCELHSELT----------------STHVTKIISHIVKRLKDSD----------------------------------  133 (896)
Q Consensus       104 G~IAeg~~d~I----------------~P~LpkIL~~IlrrLkDpD----------------------------------  133 (896)
                      |+++..|.-..                .||+..  +---+.|.|.+                                  
T Consensus       175 ~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~--~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s  252 (728)
T KOG4535|consen  175 GAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSP--PDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDS  252 (728)
T ss_pred             HHHHhcCCCCHHHHHHhcCCCccccccCCCCCC--hHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccc
Confidence            99988754210                011100  01111122211                                  


Q ss_pred             ----------------hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC
Q 002658          134 ----------------SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS  197 (896)
Q Consensus       134 ----------------s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~  197 (896)
                                      +.||--|..++..++.++   +.  -..++.++...+...+.+..+.+|..++.||.++...+.
T Consensus       253 ~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~---~~--~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv  327 (728)
T KOG4535|consen  253 CSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYF---SM--TQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLI  327 (728)
T ss_pred             cchhhHHhhhcCccCCchhHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHh
Confidence                            578888999999999998   21  123456666677777788999999999999999987752


Q ss_pred             --CCCc---hhHHHHHHHHHHHhc--------CCchhhHHHHHHHHHHHHhcc-ccCcccHH-HHHHHHHHhhCCCCHHH
Q 002658          198 --DPPV---VAFQKLCARICKLLS--------NQNFMAKASLLPVVGSLSQVG-AIAPQSLE-PLLQSIHECLGSTDWAT  262 (896)
Q Consensus       198 --d~~~---~yL~~LlPRL~kLLk--------s~s~kaK~alL~aIgSLA~vg-a~~~pyle-~lLp~L~e~LsddDW~l  262 (896)
                        +.+.   .-+..=+-+++-+.+        +.++..+.++-+++..+.... ..++..-. ..+..+..|-.+++.-+
T Consensus       328 ~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv  407 (728)
T KOG4535|consen  328 QQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLV  407 (728)
T ss_pred             hhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHH
Confidence              2221   112222223332222        223333443333333322111 12222121 23334555665556667


Q ss_pred             HHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHH
Q 002658          263 RKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRD  305 (896)
Q Consensus       263 RKaA~EaLgsLA~avG-e~L~Py~~~~I~~LE~~RfDKvKpVRD  305 (896)
                      |.+|+.+++.+..+-+ -.-.-|...|.+.+....+||.=-+|+
T Consensus       408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~  451 (728)
T KOG4535|consen  408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRA  451 (728)
T ss_pred             HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHH
Confidence            7777777776666666 444556677777776777775544443

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.48  E-value=2.7  Score=51.48  Aligned_cols=156  Identities=8%  Similarity=0.145  Sum_probs=111.1

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-ccchh----hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002658           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTST----HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY  151 (896)
Q Consensus        77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~-d~I~P----~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~l  151 (896)
                      +..+=++|...++-.+..||..|..+|=..--.-+ |.-..    -|.+=.-.+...|.|+-|+||+.+...+-.+...+
T Consensus       172 ~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f  251 (1005)
T KOG1949|consen  172 YRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF  251 (1005)
T ss_pred             HHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            34445677777788899999998888754432222 22223    34444457888899999999999988777666544


Q ss_pred             hcccccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHH
Q 002658          152 LNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVV  230 (896)
Q Consensus       152 i~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aI  230 (896)
                      -.-.+   ..++..+|.-+++.| .|..-.|.-+.+.||..+..+  .+..+.|..++|++-..|.+.+.++|.+.++.|
T Consensus       252 We~iP---~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~l  326 (1005)
T KOG1949|consen  252 WEMIP---PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDML  326 (1005)
T ss_pred             HHHcC---HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--ccchhHHHHHHHhcchhhhccchhHHHHHHHHH
Confidence            22111   255677777788877 355667888888888888764  334578999999999999999999999999988


Q ss_pred             HHHHhcc
Q 002658          231 GSLSQVG  237 (896)
Q Consensus       231 gSLA~vg  237 (896)
                      .-+-.+.
T Consensus       327 l~ik~vr  333 (1005)
T KOG1949|consen  327 LKIKAVR  333 (1005)
T ss_pred             HHHHhhh
Confidence            7764333

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.38  E-value=6.2  Score=45.02  Aligned_cols=179  Identities=17%  Similarity=0.160  Sum_probs=116.3

Q ss_pred             hhhHHHHHHHHHHHHHHhcccchh--hHHHHHHH-HHHhhcCC--ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhH
Q 002658           93 PAVKKESVRLLALVCELHSELTST--HVTKIISH-IVKRLKDS--DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFV  167 (896)
Q Consensus        93 ~~vRKeAIllLG~IAeg~~d~I~P--~LpkIL~~-IlrrLkDp--Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL  167 (896)
                      ...|+....++....+..-+.+.+  ....++.. ....+.++  +..=+..|.+-|--+++.+ +...   .-+--..+
T Consensus        51 ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~i-DnAn---dl~~~ggl  126 (342)
T KOG2160|consen   51 KEDRKWLQELMQAHTEDQKDFVEDMKVISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDI-DNAN---DLISLGGL  126 (342)
T ss_pred             ccchHHHHHHHHHhhhhhhhhcccchhHHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhh-hhHH---hHhhccCH
Confidence            455677777777766655544322  12222222 34444444  4556889999999999998 4211   01112356


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHHhcC-CchhhHHHHHHHHHHHHhccccCcccHH
Q 002658          168 KPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQ-KLCARICKLLSN-QNFMAKASLLPVVGSLSQVGAIAPQSLE  245 (896)
Q Consensus       168 ~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~-~LlPRL~kLLks-~s~kaK~alL~aIgSLA~vga~~~pyle  245 (896)
                      .+|+..|...+..+-+.|+..|.+++++-+..-...++ .-+++|+++|.+ +...+|..+|-||++++.   .+.|...
T Consensus       127 ~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIR---n~~~g~~  203 (342)
T KOG2160|consen  127 VPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIR---NNKPGQD  203 (342)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHh---cCcHHHH
Confidence            77777888889999999999999999976332111222 145777777765 466678889999999984   2222233


Q ss_pred             HHH-----HHHHHhhCC--CCHHHHHHHHHHHHHHHHhcc
Q 002658          246 PLL-----QSIHECLGS--TDWATRKAAADALSALALHSS  278 (896)
Q Consensus       246 ~lL-----p~L~e~Lsd--dDW~lRKaA~EaLgsLA~avG  278 (896)
                      .++     .+|.+++.+  .+..++.-|+..+..++....
T Consensus       204 ~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~  243 (342)
T KOG2160|consen  204 EFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK  243 (342)
T ss_pred             HHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence            332     456677777  678888889999999988877

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=93.22  E-value=4.3  Score=49.85  Aligned_cols=172  Identities=12%  Similarity=0.104  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchh
Q 002658           38 MVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST  116 (896)
Q Consensus        38 ~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~-Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P  116 (896)
                      -..+.-.|.-+++.....++.-+.++-+|.|++.++++. ...+|+.|+....+....+.+.++..+..+++.-..... 
T Consensus       347 ~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~v-  425 (700)
T KOG2137|consen  347 GPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFV-  425 (700)
T ss_pred             hhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHH-
Confidence            344555566666665566788899999999999987765 788899999888888899999999999999996652211 


Q ss_pred             hHHHHHHHHHH-hhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002658          117 HVTKIISHIVK-RLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC  195 (896)
Q Consensus       117 ~LpkIL~~Ilr-rLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~  195 (896)
                       -..|+|.|-. .++.....|+..|..+++.++..+-+.      . .-..+.|+++.+...++.+-.+-....++++=.
T Consensus       426 -k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~------~-v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~  497 (700)
T KOG2137|consen  426 -KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA------A-VLDELLPILKCIKTRDPAIVMGFLRIYEALALI  497 (700)
T ss_pred             -HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH------H-hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence             1223333332 466677899999999999999777221      2 333555777777656666554433333332221


Q ss_pred             cCCCCchhHHHHHHHHHHHhcCC
Q 002658          196 ASDPPVVAFQKLCARICKLLSNQ  218 (896)
Q Consensus       196 a~d~~~~yL~~LlPRL~kLLks~  218 (896)
                      ......-..+.+||.++.+...+
T Consensus       498 ~~~g~ev~~~~VlPlli~ls~~~  520 (700)
T KOG2137|consen  498 IYSGVEVMAENVLPLLIPLSVAP  520 (700)
T ss_pred             cccceeeehhhhhhhhhhhhhcc
Confidence            12211113455677777555543

>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]

Probab=93.11  E-value=4  Score=47.03  Aligned_cols=209  Identities=16%  Similarity=0.097  Sum_probs=127.6

Q ss_pred             CChhhHHHHHHHHHHH--HHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHH
Q 002658           91 PKPAVKKESVRLLALV--CELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK  168 (896)
Q Consensus        91 ~k~~vRKeAIllLG~I--Aeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~  168 (896)
                      ...-.|.+++.-+.+.  ++..++++.+....+...+.+.|+-|.+.=.-.+.-.+|.++-.+.  +++.+++......+
T Consensus        72 k~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg--~~q~~ee~~~t~~~  149 (427)
T KOG2842|consen   72 KSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAG--PGQEEEEWTKTLGP  149 (427)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhcc--CcchhhHHHhccch
Confidence            3455688877665544  5667788999888999999999999998777777777887777772  23344455555666


Q ss_pred             HHHHHHhcCCHhHH--HHHHHHHHHHHHhc-CCCCchhHHHHHHHHHH----HhcCC-----chhhHHHHHHHHHHHH--
Q 002658          169 PLFEAMMEQNKGVQ--SGAAMCMAKMVECA-SDPPVVAFQKLCARICK----LLSNQ-----NFMAKASLLPVVGSLS--  234 (896)
Q Consensus       169 pL~eaL~Eqnk~VQ--~gAasALAkIIE~a-~d~~~~yL~~LlPRL~k----LLks~-----s~kaK~alL~aIgSLA--  234 (896)
                      .++-.+.+++..++  ..+|.||+..|-.+ .+.+.-+.-.+|-.+.-    +....     ..+.-..++.|+.+=+  
T Consensus       150 ~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~  229 (427)
T KOG2842|consen  150 FLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLLLTCLTAWSLL  229 (427)
T ss_pred             HHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHHHHHHHHHHHH
Confidence            66666677766666  46777888777654 33222222222222211    22221     1111122233222211  


Q ss_pred             ---hccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc----hHHHhhHHHHHHHHHhhhcCCCh
Q 002658          235 ---QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS----NLVIDGATSTLTVLEACRFDKIK  301 (896)
Q Consensus       235 ---~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG----e~L~Py~~~~I~~LE~~RfDKvK  301 (896)
                         ...+..........|.|-.+|..+.-..|.++.+++..+.....    +.+.|-++.+...|.....|..|
T Consensus       230 Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~latdssK  303 (427)
T KOG2842|consen  230 LTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDLATDSSK  303 (427)
T ss_pred             HHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHHHHhhhh
Confidence               10011111222245778888888888899999888887766554    66778889998888877777543

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=93.03  E-value=17  Score=45.35  Aligned_cols=214  Identities=17%  Similarity=0.140  Sum_probs=131.2

Q ss_pred             HHHHHHHcC-CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH-hcccchhhHHHH
Q 002658           44 KILTSLSKL-ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCEL-HSELTSTHVTKI  121 (896)
Q Consensus        44 rll~~L~KL-sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg-~~d~I~P~LpkI  121 (896)
                      +.+.+++.- .|.++.++|++-+.+|-.  +|+....+...+....  .++.+|--|+..|.-..+- +++.-...+..|
T Consensus         7 qav~a~ndp~vdsa~KqqA~~y~~qiKs--Sp~aw~Icie~l~~~t--s~d~vkf~clqtL~e~vrekyne~nl~elqlv   82 (980)
T KOG2021|consen    7 QAVNAVNDPRVDSATKQQAIEYLNQIKS--SPNAWEICIELLINET--SNDLVKFYCLQTLIELVREKYNEANLNELQLV   82 (980)
T ss_pred             HHHHhhCCCcccHHHHHHHHHHHHhhcC--CccHHHHHHHHHHhhc--ccchhhhhhHHHHHHHHHHhhccCCHHHHHHH
Confidence            344444444 789999999999999987  6777888888887544  5688999999988777654 444434344444


Q ss_pred             HHHHHHh-----hcCC----ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc--CC--HhHHHHHHHH
Q 002658          122 ISHIVKR-----LKDS----DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME--QN--KGVQSGAAMC  188 (896)
Q Consensus       122 L~~Ilrr-----LkDp----Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E--qn--k~VQ~gAasA  188 (896)
                      --.|..-     |.+.    -+-|++.+..+++.|.-..--       ..|+.|+.-|+..+.-  ..  -+.---.+.|
T Consensus        83 R~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp-------~~WnsfF~dlmsv~~~~s~~~~~dfflkvlla  155 (980)
T KOG2021|consen   83 RFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYP-------DCWNSFFDDLMSVFQVDSAISGLDFFLKVLLA  155 (980)
T ss_pred             HHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence            4433332     3333    258899999999988766521       3377776666655521  11  1111123333


Q ss_pred             HHHHHHh-------------------cCCCCchhHHHHHHHHHHHh---cCC-chhhHHHHHHHHHHHHh---ccccCcc
Q 002658          189 MAKMVEC-------------------ASDPPVVAFQKLCARICKLL---SNQ-NFMAKASLLPVVGSLSQ---VGAIAPQ  242 (896)
Q Consensus       189 LAkIIE~-------------------a~d~~~~yL~~LlPRL~kLL---ks~-s~kaK~alL~aIgSLA~---vga~~~p  242 (896)
                      +..=+-+                   +++.+   +++|+.--..+|   ++- ++..-+.+|+|+|+.+.   .+-+.  
T Consensus       156 IdsEiad~dv~rT~eei~knnliKDaMR~nd---ip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIa--  230 (980)
T KOG2021|consen  156 IDSEIADQDVIRTKEEILKNNLIKDAMRDND---IPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIA--  230 (980)
T ss_pred             hhhHhhhccccCChHHHHHHhhHHHHHHhhh---HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhh--
Confidence            3221111                   12221   333433333333   333 55667789999999863   33111  


Q ss_pred             cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002658          243 SLEPLLQSIHECLGSTDWATRKAAADALSALALH  276 (896)
Q Consensus       243 yle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~a  276 (896)
                       =+.+|+-|.+++..  -++|.+||+|+-+|..-
T Consensus       231 -Nd~f~nLLy~fl~i--eelR~aac~cilaiVsK  261 (980)
T KOG2021|consen  231 -NDYFLNLLYKFLNI--EELRIAACNCILAIVSK  261 (980)
T ss_pred             -chhHHHHHHHHHhH--HHHHHHHHHHHHHHHhc
Confidence             35678888888874  67999999999887753

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.98  E-value=23  Score=46.90  Aligned_cols=270  Identities=14%  Similarity=0.078  Sum_probs=150.9

Q ss_pred             cCCCCCCCCCcchhhhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh--cCCCChhhHH
Q 002658           20 QSSSANASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYES--SNDPKPAVKK   97 (896)
Q Consensus        20 ~~~~~~~~~~~~~s~~~~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es--~ss~k~~vRK   97 (896)
                      |..+.-|.++.-+-+..++.+.-..+..||+.+.-. +  .-.+            .|.+|..+|...  +.+++-.+|-
T Consensus         4 ~~~~~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd-~--~~~~------------~~~pl~~~l~~~~~L~h~d~dvrl   68 (1266)
T KOG1525|consen    4 QFYPPGCLTSLNPISKDELLKRLKKLANCLASLDQD-N--LDLA------------SLLPLADHLIKDFLLKHKDKDVRL   68 (1266)
T ss_pred             cccCCCCccccCcccHHHHHHHHHHHHHHHhhcccC-c--hhHH------------HHHHHHHHHhhHHHhcCCCcChhH
Confidence            445567888888888888888888999999988422 2  2222            233333333222  4677777888


Q ss_pred             HHHHHHHHHHHHhc-cc--chhhHHHHHHHHHHh---hcCCCh-HH--HHHHHHHHHHHHHHHhcccccCCchhHhhhHH
Q 002658           98 ESVRLLALVCELHS-EL--TSTHVTKIISHIVKR---LKDSDS-GM--KEACRDSIGSLSKLYLNGKEENNGTVVGLFVK  168 (896)
Q Consensus        98 eAIllLG~IAeg~~-d~--I~P~LpkIL~~Ilrr---LkDpDs-~V--R~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~  168 (896)
                      -...++..|-+.|. +.  ..++|..|..+|++.   |.|..+ ..  |---.+++..+--.++= ..++-.+.+.+++.
T Consensus        69 lvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~-~l~d~~e~~~~~f~  147 (1266)
T KOG1525|consen   69 LVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLM-LLEDCQELVHELFR  147 (1266)
T ss_pred             HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHhee-eccchHHHHHHHHH
Confidence            87778888888776 33  345777777777654   666542 11  22223333333311110 01112244555555


Q ss_pred             HHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc-----------
Q 002658          169 PLFEAMM-EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQV-----------  236 (896)
Q Consensus       169 pL~eaL~-Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~v-----------  236 (896)
                      .+|+.+. ...+.|-. -..-+-.++........+.|+-|+-.|++--.+..-.++..+-++|-.++..           
T Consensus       148 ~f~d~~~~~~~~~v~~-~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~  226 (1266)
T KOG1525|consen  148 TFFDLARKGHPKKVFN-MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNS  226 (1266)
T ss_pred             HHHHHHhccccHHHHH-HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHH
Confidence            5555552 22222222 1111222222233333445555555555444333333332222222221100           


Q ss_pred             ---c--------------------ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHH
Q 002658          237 ---G--------------------AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLE  293 (896)
Q Consensus       237 ---g--------------------a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE  293 (896)
                         +                    -..+.-+-.++|.|..-|..++-..|+.|...+|.|-..-+..+..-.+++-..+.
T Consensus       227 ~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl  306 (1266)
T KOG1525|consen  227 CLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFL  306 (1266)
T ss_pred             HHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHH
Confidence               0                    01223344566667777888999999999999999988888666555688888888


Q ss_pred             hhhcCCChhhHHH
Q 002658          294 ACRFDKIKPVRDS  306 (896)
Q Consensus       294 ~~RfDKvKpVRDa  306 (896)
                      ..-.|+..+||=.
T Consensus       307 ~r~~D~~~~vR~~  319 (1266)
T KOG1525|consen  307 GRFNDISVEVRME  319 (1266)
T ss_pred             HHhccCChhhhhh
Confidence            8889999989955

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=92.97  E-value=0.93  Score=53.26  Aligned_cols=204  Identities=15%  Similarity=0.176  Sum_probs=130.4

Q ss_pred             cCCCChhhHHHHHHHHHHHHHHhccc-chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccccc---CCchhH
Q 002658           88 SNDPKPAVKKESVRLLALVCELHSEL-TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEE---NNGTVV  163 (896)
Q Consensus        88 ~ss~k~~vRKeAIllLG~IAeg~~d~-I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e---~~~~~~  163 (896)
                      .++.+..+|.+|++++++.+-.++-. ..-+...-..-|+..|.|..-.+|.-+.|++|.|...++...+.   ......
T Consensus       400 ~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s  479 (728)
T KOG4535|consen  400 NDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS  479 (728)
T ss_pred             cchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH
Confidence            35667789999999999887755533 45566666778888999999999999999999999999764211   011223


Q ss_pred             hhhHHHHHHHHh---cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHH-HHHHhcC----CchhhHHHHHHHHHHHHh
Q 002658          164 GLFVKPLFEAMM---EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCAR-ICKLLSN----QNFMAKASLLPVVGSLSQ  235 (896)
Q Consensus       164 ~~lL~pL~eaL~---Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPR-L~kLLks----~s~kaK~alL~aIgSLA~  235 (896)
                      ..++..++.+-.   ..+-.|..-|+.+|..+.+-.......-+..++.- +.+++..    ..+++|-.+--+||-++.
T Consensus       480 g~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk  559 (728)
T KOG4535|consen  480 GLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK  559 (728)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence            333333333321   23566888888888887775432222223333322 2222221    267888877778888875


Q ss_pred             cccc---CcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcc--hHHHhhHHHHHHH
Q 002658          236 VGAI---APQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSS--NLVIDGATSTLTV  291 (896)
Q Consensus       236 vga~---~~pyle~lLp~L~e~Lsd-dDW~lRKaA~EaLgsLA~avG--e~L~Py~~~~I~~  291 (896)
                      -.+.   ..+....+-+.|...+.+ .+..+|..|+-+|...+.-.+  +.|.-.....+.+
T Consensus       560 n~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv~a  621 (728)
T KOG4535|consen  560 NPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQYALSWNALVTA  621 (728)
T ss_pred             CccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccchhHHhHHHHHHHHH
Confidence            4422   255666777777777665 678899999999888777666  4443333444333

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=92.88  E-value=0.26  Score=56.44  Aligned_cols=130  Identities=15%  Similarity=0.139  Sum_probs=84.3

Q ss_pred             CChhHHHHHHHH-HHHHHhcCCCCCHHHHHHHHhhh------cCCCChhhHHHHHHHHHHHHHHhcc---------cchh
Q 002658           53 ADRDTHQIAIED-LEKTIQTLSQESLPMLLNCLYES------SNDPKPAVKKESVRLLALVCELHSE---------LTST  116 (896)
Q Consensus        53 sDRDT~k~Aa~e-LD~La~~L~pd~Lp~fLs~L~es------~ss~k~~vRKeAIllLG~IAeg~~d---------~I~P  116 (896)
                      +|-+|++.|+.. |..+.........+.++.++...      ..+.+|..+..|+.+++.++.....         .+.+
T Consensus       222 sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~  301 (370)
T PF08506_consen  222 SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD  301 (370)
T ss_dssp             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred             cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence            466677766554 44555555432344444455433      3467899999999999999875421         1223


Q ss_pred             hHHHHHHHHHHhhc---CCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHH
Q 002658          117 HVTKIISHIVKRLK---DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCM  189 (896)
Q Consensus       117 ~LpkIL~~IlrrLk---DpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasAL  189 (896)
                      ...-...+|+.-|+   ...|.+|..|++.+..+..++.       .+.+..+++.|+..|..++..|..-||.|+
T Consensus       302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~-------~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP-------KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS--------HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC-------HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            33333445555566   4568999999999999999883       256888999999999999999998888885

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=92.83  E-value=8  Score=47.95  Aligned_cols=195  Identities=14%  Similarity=0.103  Sum_probs=137.1

Q ss_pred             CCCChhhHHHHHHHHHHHHHHhcc--------cch--hhHHHHHHHHHHh--hcCCChHHHHHHHHHHHHHHHHHhcccc
Q 002658           89 NDPKPAVKKESVRLLALVCELHSE--------LTS--THVTKIISHIVKR--LKDSDSGMKEACRDSIGSLSKLYLNGKE  156 (896)
Q Consensus        89 ss~k~~vRKeAIllLG~IAeg~~d--------~I~--P~LpkIL~~Ilrr--LkDpDs~VR~Ac~~aLG~LA~~li~~~~  156 (896)
                      +...|..=+.|+.++=.++|+-..        .+.  ..|..+++.+...  +..+.+.|.---.+.|.++......+  
T Consensus       450 ~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e--  527 (980)
T KOG2021|consen  450 KEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE--  527 (980)
T ss_pred             CcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc--
Confidence            556788889999999999987432        122  4566777777665  67788899999999999999888332  


Q ss_pred             cCCchhHhhhHHHHHHHH------hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC----chh-----
Q 002658          157 ENNGTVVGLFVKPLFEAM------MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ----NFM-----  221 (896)
Q Consensus       157 e~~~~~~~~lL~pL~eaL------~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~----s~k-----  221 (896)
                             +...|.++.+.      ..+|.+|--.|.+-+.+++...+....+|+++++.++-.+|+.+    ++.     
T Consensus       528 -------sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt  600 (980)
T KOG2021|consen  528 -------SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLT  600 (980)
T ss_pred             -------hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccc
Confidence                   22444444444      35688999999999999999988888899999999999999432    100     


Q ss_pred             ----------------------h--H-------------------------------H------HHHHHHHHHHh---cc
Q 002658          222 ----------------------A--K-------------------------------A------SLLPVVGSLSQ---VG  237 (896)
Q Consensus       222 ----------------------a--K-------------------------------~------alL~aIgSLA~---vg  237 (896)
                                            +  +                               .      .++-+||+++.   .+
T Consensus       601 ~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~r  680 (980)
T KOG2021|consen  601 IFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIR  680 (980)
T ss_pred             cccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhccccc
Confidence                                  0  0                               1      23334555542   01


Q ss_pred             ----------ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHh
Q 002658          238 ----------AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEA  294 (896)
Q Consensus       238 ----------a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~  294 (896)
                                ..|...++.+++.|..+..-  -.+|.++--+++.|-..+|+.+.||++..++.|.+
T Consensus       681 lvt~~qvg~~~vf~~~ldvil~~ls~f~k~--E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~  745 (980)
T KOG2021|consen  681 LVTENQVGNMVVFSNILDVILVTLSFFNKF--ENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLS  745 (980)
T ss_pred             CcchhcccHHHHHHHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHh
Confidence                      11234444455555544443  45899999999999999999999999999987763

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=92.75  E-value=13  Score=50.57  Aligned_cols=247  Identities=13%  Similarity=0.108  Sum_probs=144.0

Q ss_pred             HHHHHHh---cCCCCCHHHHHHHHhhhc----CCCChhhHHHHHHHHHHHHHHhcccchhhHHH----HHHHHHHhhcCC
Q 002658           64 DLEKTIQ---TLSQESLPMLLNCLYESS----NDPKPAVKKESVRLLALVCELHSELTSTHVTK----IISHIVKRLKDS  132 (896)
Q Consensus        64 eLD~La~---~L~pd~Lp~fLs~L~es~----ss~k~~vRKeAIllLG~IAeg~~d~I~P~Lpk----IL~~IlrrLkDp  132 (896)
                      .+|++-.   .|+.+.|..|+.+|++-.    ... ..-|--++.-|..++....+.+.-.+.+    |-.++++.-.++
T Consensus      1071 ~idkIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~-~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~ 1149 (1780)
T PLN03076       1071 EMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSP-SDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSE 1149 (1780)
T ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHHhhHHHHccC-CCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCc
Confidence            5566654   467777888888887542    111 2347778888888888777776544444    555566655566


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 002658          133 DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARI  211 (896)
Q Consensus       133 Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~-Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL  211 (896)
                      +..|+--|.+.|.+|+-.++....-.+...-..||+|+...|. ..+..+++-...|+..+++....-+..--..++--|
T Consensus      1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VL 1229 (1780)
T PLN03076       1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVF 1229 (1780)
T ss_pred             chhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence            7789999999999999988653110111223579999998884 567899999999999999875333322222222222


Q ss_pred             HHHhcCCchhhHHHHHHHHHHHHhcc-ccC----cccHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHhc--------
Q 002658          212 CKLLSNQNFMAKASLLPVVGSLSQVG-AIA----PQSLEPLLQSIHECLGST-DWATRKAAADALSALALHS--------  277 (896)
Q Consensus       212 ~kLLks~s~kaK~alL~aIgSLA~vg-a~~----~pyle~lLp~L~e~Lsdd-DW~lRKaA~EaLgsLA~av--------  277 (896)
                      .......+..+-..+.+.+.-|..-. ...    ...|..++.+|.+|.... +..+=..|++.|-.++..+        
T Consensus      1230 s~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~ 1309 (1780)
T PLN03076       1230 TTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSS 1309 (1780)
T ss_pred             HHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccc
Confidence            32333333333334444444443211 111    246667777777776542 2222234444444332222        


Q ss_pred             ---------------------------c-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHH
Q 002658          278 ---------------------------S-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEAL  311 (896)
Q Consensus       278 ---------------------------G-e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eAL  311 (896)
                                                 + +...-+--+++..|..+-.|...+||..|++.|
T Consensus      1310 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtL 1371 (1780)
T PLN03076       1310 SRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVL 1371 (1780)
T ss_pred             ccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence                                       0 111112234455555667788888999988776

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=92.69  E-value=1.1  Score=42.56  Aligned_cols=86  Identities=12%  Similarity=0.161  Sum_probs=68.2

Q ss_pred             HHHHHHHHHhcC----CchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-h
Q 002658          206 KLCARICKLLSN----QNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-N  279 (896)
Q Consensus       206 ~LlPRL~kLLks----~s~kaK~alL~aIgSLA~vg-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e  279 (896)
                      -++.++-..+++    ..+.-|..+|.+|+.++..+ .....+...+|.+|...+..+  .+|..|++|...+...++ +
T Consensus        11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~   88 (107)
T PF08064_consen   11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE   88 (107)
T ss_pred             HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence            456666666665    45566778899999998755 556667777888888887765  899999999999999999 8


Q ss_pred             HHHhhHHHHHHHHH
Q 002658          280 LVIDGATSTLTVLE  293 (896)
Q Consensus       280 ~L~Py~~~~I~~LE  293 (896)
                      .+.|+++.++-++.
T Consensus        89 ~l~~ll~~~~~~l~  102 (107)
T PF08064_consen   89 DLGPLLDQIFAILL  102 (107)
T ss_pred             HHHHHHHHHHHHHH
Confidence            89999999887664

; GO: 0004674 protein serine/threonine kinase activity

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=92.66  E-value=26  Score=41.34  Aligned_cols=168  Identities=11%  Similarity=0.127  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCC-------------CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHH
Q 002658           39 VEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLS-------------QESLPMLLNCLYESSNDPKPAVKKESVRLLAL  105 (896)
Q Consensus        39 ~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~-------------pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~  105 (896)
                      ....+-++.+|.+.+..||.+..+.-++.+.+..+             ++.+.+|+..|    +.+++.+-..+..+|..
T Consensus        52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL----~~~d~~i~~~a~~iLt~  127 (429)
T cd00256          52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL----NRQDQFIVHMSFSILAK  127 (429)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH----cCCchhHHHHHHHHHHH
Confidence            34556667788888999999999999998887532             23355555533    34567777788888877


Q ss_pred             HHHHhccc-chhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHH-hcccccCCchhHhhhHHHHHHHHhc--CCHh
Q 002658          106 VCELHSEL-TSTHVTKIISHIVKRLKDSD-SGMKEACRDSIGSLSKLY-LNGKEENNGTVVGLFVKPLFEAMME--QNKG  180 (896)
Q Consensus       106 IAeg~~d~-I~P~LpkIL~~IlrrLkDpD-s~VR~Ac~~aLG~LA~~l-i~~~~e~~~~~~~~lL~pL~eaL~E--qnk~  180 (896)
                      ++...... -...+++++..+...|+.++ .....+|..++..|...= .+..+-     -...+++|+..|..  .+..
T Consensus       128 l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~-----~~~~v~~L~~~L~~~~~~~Q  202 (429)
T cd00256         128 LACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV-----LADGVPTLVKLLSNATLGFQ  202 (429)
T ss_pred             HHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH-----HccCHHHHHHHHhhccccHH
Confidence            76533332 23467778888888887654 556667776666553211 000010     01256777777742  2557


Q ss_pred             HHHHHHHHHHHHHHhcCCCCchhH--HHHHHHHHHHhcC
Q 002658          181 VQSGAAMCMAKMVECASDPPVVAF--QKLCARICKLLSN  217 (896)
Q Consensus       181 VQ~gAasALAkIIE~a~d~~~~yL--~~LlPRL~kLLks  217 (896)
                      .|.-++.|+=-+-=+..  ..+.+  ..++|.|+.+++.
T Consensus       203 l~Y~~ll~lWlLSF~~~--~~~~~~~~~~i~~l~~i~k~  239 (429)
T cd00256         203 LQYQSIFCIWLLTFNPH--AAEVLKRLSLIQDLSDILKE  239 (429)
T ss_pred             HHHHHHHHHHHHhccHH--HHHhhccccHHHHHHHHHHh
Confidence            77788888755432211  11111  2477777777764

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=92.63  E-value=2.9  Score=47.51  Aligned_cols=155  Identities=10%  Similarity=0.079  Sum_probs=98.0

Q ss_pred             CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002658           76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK  155 (896)
Q Consensus        76 ~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~  155 (896)
                      .+..|+..|.+..-+.+...|++|+..|..-     ..+.+-||+++.+|...+...-.. --.....+.+++.-++...
T Consensus       175 Elq~yf~~It~a~~~~~~~~r~~aL~sL~tD-----~gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~  248 (343)
T cd08050         175 ELQLYFEEITEALVGSNEEKRREALQSLRTD-----PGLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNP  248 (343)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHhccC-----CCchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCC
Confidence            4667777777776666777788776665321     224455555555555554322110 1233445666777776643


Q ss_pred             ccCCchhHhhhHHHHHHHHhc----------CCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHH
Q 002658          156 EENNGTVVGLFVKPLFEAMME----------QNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKAS  225 (896)
Q Consensus       156 ~e~~~~~~~~lL~pL~eaL~E----------qnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~a  225 (896)
                      .-..+.++..++++++.+|..          ....+..-||..|+.+|......-....+.++-.|.+.|-++.... ..
T Consensus       249 ~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~-~~  327 (343)
T cd08050         249 NLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPL-TT  327 (343)
T ss_pred             CCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCc-ch
Confidence            334567889999999999932          2246778899999999997655544556677777777877654332 23


Q ss_pred             HHHHHHHHHhcc
Q 002658          226 LLPVVGSLSQVG  237 (896)
Q Consensus       226 lL~aIgSLA~vg  237 (896)
                      .|++|..+...|
T Consensus       328 ~YGAi~GL~~lG  339 (343)
T cd08050         328 HYGAIVGLSALG  339 (343)
T ss_pred             hhHHHHHHHHhC
Confidence            677776665555

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.42  E-value=3.3  Score=52.68  Aligned_cols=141  Identities=13%  Similarity=0.120  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc-CCHhHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHH
Q 002658          135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME-QNKGVQSGAAMCMAKMVECASD-PPVVAFQKLCARIC  212 (896)
Q Consensus       135 ~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E-qnk~VQ~gAasALAkIIE~a~d-~~~~yL~~LlPRL~  212 (896)
                      .-|..|+.+|+.|+..+.. +.  ..-.-..++-..++.|.+ +.|-...=.|.||.++-|+-.. .....=..--.+|+
T Consensus       572 EqrtmaAFVLAviv~nf~l-GQ--~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~  648 (1387)
T KOG1517|consen  572 EQRTMAAFVLAVIVRNFKL-GQ--KACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLI  648 (1387)
T ss_pred             HHHHHHHHHHHHHHcccch-hH--HHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHH
Confidence            4556666666666655421 10  001122344455555644 3455555688888888876322 11112223457889


Q ss_pred             HHhcCCchhhHHHHHHHHHHHHhcc-ccCc----------------ccHHHHHH----HHHHhhCCCCHHHHHHHHHHHH
Q 002658          213 KLLSNQNFMAKASLLPVVGSLSQVG-AIAP----------------QSLEPLLQ----SIHECLGSTDWATRKAAADALS  271 (896)
Q Consensus       213 kLLks~s~kaK~alL~aIgSLA~vg-a~~~----------------pyle~lLp----~L~e~LsddDW~lRKaA~EaLg  271 (896)
                      .+|.++...+|++++-|+|++...+ .-|.                .-.+.+++    .|...+++...-+|+.++.+|.
T Consensus       649 ~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls  728 (1387)
T KOG1517|consen  649 LLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALS  728 (1387)
T ss_pred             HHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHH
Confidence            9999999999999999999998643 1111                11333333    5566677777888888888777


Q ss_pred             HHHHhcc
Q 002658          272 ALALHSS  278 (896)
Q Consensus       272 sLA~avG  278 (896)
                      .++...-
T Consensus       729 ~~~~g~~  735 (1387)
T KOG1517|consen  729 HFVVGYV  735 (1387)
T ss_pred             HHHHhhH
Confidence            6665443

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=92.32  E-value=21  Score=39.41  Aligned_cols=185  Identities=19%  Similarity=0.144  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCc----hhHhhhHHHHHHHHhcCC-----HhHHHHHHHH
Q 002658          118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNG----TVVGLFVKPLFEAMMEQN-----KGVQSGAAMC  188 (896)
Q Consensus       118 LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~----~~~~~lL~pL~eaL~Eqn-----k~VQ~gAasA  188 (896)
                      .+-|-+.|+++|.-+.  --+.+...+.+|+..--.+-.+...    -.+-..+|-++..+.+.+     +.+ ...|.+
T Consensus        62 f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~-~~~A~~  138 (262)
T PF14225_consen   62 FEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQEC-IEIAEA  138 (262)
T ss_pred             chhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHH-HHHHHH
Confidence            4556777888887665  3455666777777664332111111    123345677777776555     233 357788


Q ss_pred             HHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002658          189 MAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAAD  268 (896)
Q Consensus       189 LAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~E  268 (896)
                      |+.+++..+..       =+-+++..+....|+-+..-+.++.+.+. ...|+.|--.++-.|.+.|.+.-.-+|..+++
T Consensus       139 La~~a~~~~~~-------~La~il~~ya~~~fr~~~dfl~~v~~~l~-~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~  210 (262)
T PF14225_consen  139 LAQVAEAQGLP-------NLARILSSYAKGRFRDKDDFLSQVVSYLR-EAFFPDHEFQILTFLLGLLENGPPWLRRKTLQ  210 (262)
T ss_pred             HHHHHHhCCCc-------cHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhCchhHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence            99999865433       12444555555677777766666555443 13457777888888999999887788999999


Q ss_pred             HHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhccC
Q 002658          269 ALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (896)
Q Consensus       269 aLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~~  320 (896)
                      +|..+...+.-. .|+-.++|..+......      +...+||+..+.+-.+
T Consensus       211 iL~~ll~~~d~~-~~~~~dlispllrlL~t------~~~~eAL~VLd~~v~~  255 (262)
T PF14225_consen  211 ILKVLLPHVDMR-SPHGADLISPLLRLLQT------DLWMEALEVLDEIVTR  255 (262)
T ss_pred             HHHHHhccccCC-CCcchHHHHHHHHHhCC------ccHHHHHHHHHHHHhh
Confidence            999999888711 45666677666544444      4667888888887754

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=92.30  E-value=6.3  Score=46.98  Aligned_cols=201  Identities=18%  Similarity=0.199  Sum_probs=114.7

Q ss_pred             hhHhHHHHHHHHHHHHHcC--CCh---------------hHHHHHHHHHHHHHhcCCCCCHHHHHHHHhh--h--cCCCC
Q 002658           34 SHLAMVEMKQKILTSLSKL--ADR---------------DTHQIAIEDLEKTIQTLSQESLPMLLNCLYE--S--SNDPK   92 (896)
Q Consensus        34 ~~~~~~~Lk~rll~~L~KL--sDR---------------DT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~e--s--~ss~k   92 (896)
                      ..+.+.++|..++..|..-  .|.               +....|-..|.++...+....+...|-.|+-  .  ..+..
T Consensus       213 ~~~~L~~~K~~il~fL~sg~f~d~~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~  292 (501)
T PF13001_consen  213 SRENLTERKLAILKFLASGFFPDEERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGR  292 (501)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCcHhHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCC
Confidence            4569999999999988654  232               2556677777777766544344333333332  1  11111


Q ss_pred             hhhHHH-HHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCC--ChHHHHHHHHHH---HHHHHHHhcccccCCchhHhhh
Q 002658           93 PAVKKE-SVRLLALVCELHSELTSTHVTKIISHIVKRLKDS--DSGMKEACRDSI---GSLSKLYLNGKEENNGTVVGLF  166 (896)
Q Consensus        93 ~~vRKe-AIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDp--Ds~VR~Ac~~aL---G~LA~~li~~~~e~~~~~~~~l  166 (896)
                      ++++-. -.++|..+++...-.  .+.+.++..+..+|..+  .+.+|..+..-+   .....++               
T Consensus       293 ~pa~~~lq~kIL~~L~kS~~Aa--~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~---------------  355 (501)
T PF13001_consen  293 PPASPRLQEKILSLLSKSVIAA--TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHI---------------  355 (501)
T ss_pred             CCCCHHHHHHHHHHHHHhHHHH--hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhc---------------
Confidence            122111 245555555532211  23355566667777766  556666665554   2222222               


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh--------cCCchhhHHHHHHHHHHHHhcc-
Q 002658          167 VKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLL--------SNQNFMAKASLLPVVGSLSQVG-  237 (896)
Q Consensus       167 L~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLL--------ks~s~kaK~alL~aIgSLA~vg-  237 (896)
                                     .......|..+++.              .+.+++        .+.....|..+|.+||.++..- 
T Consensus       356 ---------------~~~~l~~l~~~i~~--------------~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p  406 (501)
T PF13001_consen  356 ---------------SPQILKLLRPVILS--------------QGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAP  406 (501)
T ss_pred             ---------------CHHHHHHHHHHHHh--------------cCccccccccccCCCcccHHHHHHHHHHHHHHHccCc
Confidence                           01111122233322              222222        1235668889999999998633 


Q ss_pred             ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHH
Q 002658          238 AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLV  281 (896)
Q Consensus       238 a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L  281 (896)
                      ..+..- -.++.-|++.|.+++.++|-+.-|||+.|+.+..+.-
T Consensus       407 ~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~  449 (501)
T PF13001_consen  407 SLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLP  449 (501)
T ss_pred             cccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccc
Confidence            333111 3567788888888999999999999999999998543

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.28  E-value=11  Score=50.95  Aligned_cols=242  Identities=20%  Similarity=0.226  Sum_probs=148.4

Q ss_pred             HHHHcCCC-hh-----HHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCC-ChhhHHHHHHHHHHHHHHhcccchhhH
Q 002658           47 TSLSKLAD-RD-----THQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDP-KPAVKKESVRLLALVCELHSELTSTHV  118 (896)
Q Consensus        47 ~~L~KLsD-RD-----T~k~Aa~eLD~La~~L~pd~-Lp~fLs~L~es~ss~-k~~vRKeAIllLG~IAeg~~d~I~P~L  118 (896)
                      .++.|+.+ ||     .+-.|+..|.+....+.+.+ +..-+..|+.-.++. .|.++.-++.++..+++.++....-|.
T Consensus       919 ~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~v  998 (2067)
T KOG1822|consen  919 NSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLV  998 (2067)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhH
Confidence            35566632 22     44577788888888776655 555444554444443 458999999999999999988777777


Q ss_pred             HHHHHHHHHh-hcCCCh--HHHHHHHHHHH------HHHHHHhcccccCCc-----hhHhhhHHHHHHHH-hcCCHhHHH
Q 002658          119 TKIISHIVKR-LKDSDS--GMKEACRDSIG------SLSKLYLNGKEENNG-----TVVGLFVKPLFEAM-MEQNKGVQS  183 (896)
Q Consensus       119 pkIL~~Ilrr-LkDpDs--~VR~Ac~~aLG------~LA~~li~~~~e~~~-----~~~~~lL~pL~eaL-~Eqnk~VQ~  183 (896)
                      ..-++.+... |.+|..  .|++.-...+.      .|..-+..+ .++++     ..+..++-.-...+ ...++-+|+
T Consensus       999 e~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgpe-L~~N~~~d~t~~~rts~la~~allls~~d~lnqa 1077 (2067)
T KOG1822|consen  999 EPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPE-LGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQA 1077 (2067)
T ss_pred             HHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcccc-cCCCCcccchhHHHHHHHHHHHHhcCCCccchHH
Confidence            7777766666 555654  45555555544      777666432 11111     22222221111122 345899999


Q ss_pred             HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcc--------------------
Q 002658          184 GAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQ--------------------  242 (896)
Q Consensus       184 gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~~p--------------------  242 (896)
                      +|..||..+==.++.  .--++.|++.|+.+|.+.+.-.|.+.+.|+.-++.-. .....                    
T Consensus      1078 ~ai~clqqlhlFapr--~~n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~ 1155 (2067)
T KOG1822|consen 1078 AAIKCLQQLHLFAPR--HVNLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIR 1155 (2067)
T ss_pred             HHHHHHHHHHhhcch--hccHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcC
Confidence            999999988655433  1247789999999999998887777777777665322 11111                    


Q ss_pred             ---cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHH
Q 002658          243 ---SLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLE  293 (896)
Q Consensus       243 ---yle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~~~~I~~LE  293 (896)
                         .++..+-.+++  ...|..+++--.++|..+....- +.|..++..|...+.
T Consensus      1156 pe~gLeg~l~~mld--~e~d~~l~~~I~~tl~~~~~~~~~~~ls~Wl~l~k~~l~ 1208 (2067)
T KOG1822|consen 1156 PEAGLEGALFIMLD--TETDNKLLKNILETLSRMLNSLADELLSSWLMLLKDLLQ 1208 (2067)
T ss_pred             ccccchHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence               11222222222  33566677777777777555554 666666666666655

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=92.26  E-value=0.23  Score=60.17  Aligned_cols=217  Identities=13%  Similarity=0.169  Sum_probs=134.6

Q ss_pred             HHHcCCChhHHHHHHHHHHHHHhcCCCCCH-HHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 002658           48 SLSKLADRDTHQIAIEDLEKTIQTLSQESL-PMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIV  126 (896)
Q Consensus        48 ~L~KLsDRDT~k~Aa~eLD~La~~L~pd~L-p~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~Il  126 (896)
                      .|+.+.=.+..+-.+.-|=.+...++.+.| ..++++|......++-.+|---+.-+...++...+.+.  ..+|+|++.
T Consensus       298 Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~--~d~I~phv~  375 (690)
T KOG1243|consen  298 LLAALEFGDAASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQIL--NDQIFPHVA  375 (690)
T ss_pred             HHHHhhccccchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhh--cchhHHHHH
Confidence            345552222566666777777777765442 23466666666677788888877777777776665543  367788889


Q ss_pred             HhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHH
Q 002658          127 KRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQK  206 (896)
Q Consensus       127 rrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~  206 (896)
                      .++.|.++.+|..+..++..|+..+-...      .-.++++-|...-.++....-.---.||.++-.......  .=.-
T Consensus       376 ~G~~DTn~~Lre~Tlksm~~La~kL~~~~------Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~--R~~v  447 (690)
T KOG1243|consen  376 LGFLDTNATLREQTLKSMAVLAPKLSKRN------LNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV--RKRV  447 (690)
T ss_pred             hhcccCCHHHHHHHHHHHHHHHhhhchhh------hcHHHHHHHHhhCccccCcccccceeeecccccccchhh--hccc
Confidence            99999999999999999999988885531      134566666555555544444444455555555420000  0012


Q ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHHH---HhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002658          207 LCARICKLLSNQNFMAKASLLPVVGSL---SQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS  278 (896)
Q Consensus       207 LlPRL~kLLks~s~kaK~alL~aIgSL---A~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG  278 (896)
                      |.-.+...+++|-..+|.+.+-++.+.   ....    .....++|.|.-..-+++..+|..|-.++-.-.....
T Consensus       448 L~~aftralkdpf~paR~a~v~~l~at~~~~~~~----~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~  518 (690)
T KOG1243|consen  448 LASAFTRALKDPFVPARKAGVLALAATQEYFDQS----EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE  518 (690)
T ss_pred             cchhhhhhhcCCCCCchhhhhHHHhhcccccchh----hhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence            445566677777666665433333322   2211    1233677777788888888888888887777666554

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.26  E-value=2.3  Score=53.01  Aligned_cols=170  Identities=15%  Similarity=0.146  Sum_probs=108.4

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCC--------CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchh--hHHHHH
Q 002658           53 ADRDTHQIAIEDLEKTIQTLSQE--------SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST--HVTKII  122 (896)
Q Consensus        53 sDRDT~k~Aa~eLD~La~~L~pd--------~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P--~LpkIL  122 (896)
                      ..-|..-.|+.+|--+..-||+.        .+|.|+.-|+. +  +.--+=+.++.+|..|.+.|+..+..  .|.-.+
T Consensus       224 ~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~-I--eyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~L  300 (1051)
T KOG0168|consen  224 HNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLT-I--EYIDVAEQSLQALEKISRRHPKAILQAGALSAVL  300 (1051)
T ss_pred             ccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhh-h--hhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHH
Confidence            67888889999998888887642        35666555531 1  22346688999999999999987532  333333


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC--
Q 002658          123 SHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP--  200 (896)
Q Consensus       123 ~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~--  200 (896)
                      .++    .==...++..|.-+++..+..+..+.    ..++.+.||.|...|.-+++.+-+.+|.||.+++|.....+  
T Consensus       301 syl----DFFSi~aQR~AlaiaaN~Cksi~sd~----f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~k  372 (1051)
T KOG0168|consen  301 SYL----DFFSIHAQRVALAIAANCCKSIRSDE----FHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDK  372 (1051)
T ss_pred             HHH----HHHHHHHHHHHHHHHHHHHhcCCCcc----chHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHH
Confidence            322    11223455566666666666663222    36678888888888888999999999999999999862221  


Q ss_pred             -ch-hHHHHHHHHHHHhcCC----chhhHHHHHHHHHHH
Q 002658          201 -VV-AFQKLCARICKLLSNQ----NFMAKASLLPVVGSL  233 (896)
Q Consensus       201 -~~-yL~~LlPRL~kLLks~----s~kaK~alL~aIgSL  233 (896)
                       .+ +-+.|+.+...+|.-.    +..++..++..+..+
T Consensus       373 Ldql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~m  411 (1051)
T KOG0168|consen  373 LDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLM  411 (1051)
T ss_pred             HHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHH
Confidence             11 2234666777776543    223344444444444

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=92.18  E-value=0.33  Score=46.57  Aligned_cols=120  Identities=15%  Similarity=0.221  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc----------------chhhHHHHHHH
Q 002658           61 AIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL----------------TSTHVTKIISH  124 (896)
Q Consensus        61 Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~----------------I~P~LpkIL~~  124 (896)
                      .+..|-.++..--|+..+.|+..+.+..++ .+......+.+|..+.+-..+.                +..+++.|+.+
T Consensus         8 l~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~   86 (148)
T PF08389_consen    8 LAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEI   86 (148)
T ss_dssp             HHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555443355667777777666544 4667777888888888776641                33467888888


Q ss_pred             HHHhhcCCC----hHHHHHHHHHHHHHHHHHhcccccCCchhH-hhhHHHHHHHHhcCCHhHHHHHHHHH
Q 002658          125 IVKRLKDSD----SGMKEACRDSIGSLSKLYLNGKEENNGTVV-GLFVKPLFEAMMEQNKGVQSGAAMCM  189 (896)
Q Consensus       125 IlrrLkDpD----s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~-~~lL~pL~eaL~Eqnk~VQ~gAasAL  189 (896)
                      +.+.|....    ..+..++..+++.+..|+.-.      ... ..++..++..|  +++..+.+|+.||
T Consensus        87 l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~------~i~~~~~l~~~~~~l--~~~~~~~~A~~cl  148 (148)
T PF08389_consen   87 LSQILSQSSSEANEELVKAALKCLKSWISWIPIE------LIINSNLLNLIFQLL--QSPELREAAAECL  148 (148)
T ss_dssp             HHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HH------HHHSSSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHH------HhccHHHHHHHHHHc--CCHHHHHHHHHhC
Confidence            888887766    677888888888887766211      111 23788888888  4566699999887

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=92.17  E-value=1.6  Score=53.51  Aligned_cols=154  Identities=15%  Similarity=0.134  Sum_probs=98.9

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHh-hcCCChHHHHHHHHHHHHHHHHHhccc
Q 002658           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKR-LKDSDSGMKEACRDSIGSLSKLYLNGK  155 (896)
Q Consensus        77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~Ilrr-LkDpDs~VR~Ac~~aLG~LA~~li~~~  155 (896)
                      ..+|+.-+.   .+.+|..|..++..++..=-|-+..      +++..++.- ..|++-.||.||+-+||=+.   .+  
T Consensus       520 Ad~lI~el~---~dkdpilR~~Gm~t~alAy~GTgnn------kair~lLh~aVsD~nDDVrRaAVialGFVl---~~--  585 (929)
T KOG2062|consen  520 ADPLIKELL---RDKDPILRYGGMYTLALAYVGTGNN------KAIRRLLHVAVSDVNDDVRRAAVIALGFVL---FR--  585 (929)
T ss_pred             hHHHHHHHh---cCCchhhhhhhHHHHHHHHhccCch------hhHHHhhcccccccchHHHHHHHHHheeeE---ec--
Confidence            444444443   5668999999888876654444432      223333333 78999999999999988432   12  


Q ss_pred             ccCCchhHhhhHHHHHHHHhc-CCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH-
Q 002658          156 EENNGTVVGLFVKPLFEAMME-QNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSL-  233 (896)
Q Consensus       156 ~e~~~~~~~~lL~pL~eaL~E-qnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSL-  233 (896)
                             -+..++..++.|.+ .|++|..|||+||.-.|-+.+..  +    -+.-|.++.+++.--+|..++-+++-| 
T Consensus       586 -------dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~--e----Ai~lLepl~~D~~~fVRQgAlIa~amIm  652 (929)
T KOG2062|consen  586 -------DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK--E----AINLLEPLTSDPVDFVRQGALIALAMIM  652 (929)
T ss_pred             -------ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH--H----HHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence                   24466777777765 59999999999999999865543  2    233334445666444565544444444 


Q ss_pred             HhccccCcccHHHHHHHHHHhhCC
Q 002658          234 SQVGAIAPQSLEPLLQSIHECLGS  257 (896)
Q Consensus       234 A~vga~~~pyle~lLp~L~e~Lsd  257 (896)
                      ++-....-|-+..+...+.+...+
T Consensus       653 ~Q~t~~~~pkv~~frk~l~kvI~d  676 (929)
T KOG2062|consen  653 IQQTEQLCPKVNGFRKQLEKVIND  676 (929)
T ss_pred             HhcccccCchHHHHHHHHHHHhhh
Confidence            443455667777888887777766

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.14  E-value=3  Score=51.45  Aligned_cols=73  Identities=19%  Similarity=0.224  Sum_probs=46.8

Q ss_pred             cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhccCCC
Q 002658          243 SLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVD  322 (896)
Q Consensus       243 yle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~~~d  322 (896)
                      .+..++.-|.++.++-|-+.=+.|+.|+|.+|.-..+.     ..||..|...-.-|+..   ++.|++...+.+...|.
T Consensus       347 nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~y---vvqE~~vvi~dilRkyP  418 (734)
T KOG1061|consen  347 NLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDY---VVQEAIVVIRDILRKYP  418 (734)
T ss_pred             HHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccc---eeeehhHHHHhhhhcCC
Confidence            34456666777788888888888999999999988754     66777654333333332   23345555555555553


Q ss_pred             C
Q 002658          323 V  323 (896)
Q Consensus       323 ~  323 (896)
                      .
T Consensus       419 ~  419 (734)
T KOG1061|consen  419 N  419 (734)
T ss_pred             C
Confidence            3

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=92.13  E-value=25  Score=40.66  Aligned_cols=213  Identities=14%  Similarity=0.196  Sum_probs=127.1

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCCHHHHHH-----HHhhhc--CCCChhhHHHHHHHHHHHHHHhc--ccchhhHHHHHH
Q 002658           53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLN-----CLYESS--NDPKPAVKKESVRLLALVCELHS--ELTSTHVTKIIS  123 (896)
Q Consensus        53 sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs-----~L~es~--ss~k~~vRKeAIllLG~IAeg~~--d~I~P~LpkIL~  123 (896)
                      .+++.+..|..-|.-++.  +++.+..++.     +|.-++  .+.....|.+|++++-.+.+...  +.+.   .-|+.
T Consensus        37 ~~~~vraa~yRilRy~i~--d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~---~~vvr  111 (371)
T PF14664_consen   37 DSKEVRAAGYRILRYLIS--DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIP---RGVVR  111 (371)
T ss_pred             CcHHHHHHHHHHHHHHHc--CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCC---HHHHH
Confidence            448888899888877776  3333333322     111111  23346789999999999998743  3343   34567


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc--CCCCc
Q 002658          124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA--SDPPV  201 (896)
Q Consensus       124 ~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a--~d~~~  201 (896)
                      .|+....+++-..|.+|.+++..|+-.-.+-      -.+..-++.|++++.|..-.+.+..+.++-.+++.-  +.-..
T Consensus       112 alvaiae~~~D~lr~~cletL~El~l~~P~l------v~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~  185 (371)
T PF14664_consen  112 ALVAIAEHEDDRLRRICLETLCELALLNPEL------VAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLR  185 (371)
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHhhCHHH------HHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhc
Confidence            7777778899999999999988877543211      112234578888887754446666666666666642  11111


Q ss_pred             h-h-HHHHHHHHHHH----hcCCc--hhhHHHHHHHHHHHHh--cc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002658          202 V-A-FQKLCARICKL----LSNQN--FMAKASLLPVVGSLSQ--VG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADA  269 (896)
Q Consensus       202 ~-y-L~~LlPRL~kL----Lks~s--~kaK~alL~aIgSLA~--vg--a~~~pyle~lLp~L~e~LsddDW~lRKaA~Ea  269 (896)
                      + + |+.|+--+...    .+...  .+.+ .+-.+|.++..  .|  ....+-+ ..+..|.++|.-+...+|+..+|.
T Consensus       186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~-~s~~ai~~~LrsW~GLl~l~~~~~-~~lksLv~~L~~p~~~ir~~Ildl  263 (371)
T PF14664_consen  186 PGFDLESLLAPFTDFHYRKIKDDRELERLQ-ASAKAISTLLRSWPGLLYLSMNDF-RGLKSLVDSLRLPNPEIRKAILDL  263 (371)
T ss_pred             CCccHHHHHHhhhhhhccccccchHHHHHH-HHHHHHHHHHhcCCceeeeecCCc-hHHHHHHHHHcCCCHHHHHHHHHH
Confidence            1 1 44444444443    22211  1222 23334444432  34  2223333 567888899999999999999999


Q ss_pred             HHHHHHhcc
Q 002658          270 LSALALHSS  278 (896)
Q Consensus       270 LgsLA~avG  278 (896)
                      |..+...-.
T Consensus       264 l~dllrik~  272 (371)
T PF14664_consen  264 LFDLLRIKP  272 (371)
T ss_pred             HHHHHCCCC
Confidence            997766433

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=91.51  E-value=23  Score=41.74  Aligned_cols=241  Identities=12%  Similarity=0.091  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHcCC---ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh----c-CCCChhhHHHHHHHHHHHHHH
Q 002658           38 MVEMKQKILTSLSKLA---DRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYES----S-NDPKPAVKKESVRLLALVCEL  109 (896)
Q Consensus        38 ~~~Lk~rll~~L~KLs---DRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es----~-ss~k~~vRKeAIllLG~IAeg  109 (896)
                      +.+|-+.++..+.+-+   +...-|+.+.-|-.+-..+.| ....++..|...    . +-.+|..=....-.+|.+++.
T Consensus        24 ~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p-~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~  102 (435)
T PF03378_consen   24 AQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILP-IAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRF  102 (435)
T ss_dssp             HHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGG-GHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHh
Confidence            4567777777777642   223555555554443333322 233444444332    2 233566666678888888877


Q ss_pred             hcc----cchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh-cCCHhHHHH
Q 002658          110 HSE----LTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSG  184 (896)
Q Consensus       110 ~~d----~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~-Eqnk~VQ~g  184 (896)
                      ..+    .+..+-+.++|.+..-|...-...--=+-..++.|.+...   .+...+.+..++++|+.-.. +..-++ -|
T Consensus       103 ~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~---~~~~p~~y~~L~~~Ll~p~lWe~~gni-Pa  178 (435)
T PF03378_consen  103 VCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP---SSPLPDAYKQLFPPLLSPALWERRGNI-PA  178 (435)
T ss_dssp             S-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS-----S--TTTGGGHHHHTSGGGGGSTTTH-HH
T ss_pred             ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCCCcHHHHHHHHHHcCcchhccCCCc-Cc
Confidence            443    2445667777777777665432222222334555555552   11223445566777665442 333344 34


Q ss_pred             HHHHHHHHHHhcCCCCc--hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc-ccCcccHHHHHHHHHHhhCC-CC
Q 002658          185 AAMCMAKMVECASDPPV--VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG-AIAPQSLEPLLQSIHECLGS-TD  259 (896)
Q Consensus       185 AasALAkIIE~a~d~~~--~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vg-a~~~pyle~lLp~L~e~Lsd-dD  259 (896)
                      ...-|.++++..+..+.  ..+..++-.+-+++.+.....  .....+.+++. .. ....+|+..++..|+..|+. .-
T Consensus       179 lvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~--~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT  256 (435)
T PF03378_consen  179 LVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDH--YGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKT  256 (435)
T ss_dssp             HHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHH--HHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcch--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCc
Confidence            45567777776544443  578889998899998875442  34567777763 33 46788999999999999875 34


Q ss_pred             HHHHHHHHHHHHHHHHhcc-hHHHhhH
Q 002658          260 WATRKAAADALSALALHSS-NLVIDGA  285 (896)
Q Consensus       260 W~lRKaA~EaLgsLA~avG-e~L~Py~  285 (896)
                      ....+.-+--++.++...| +.+...+
T Consensus       257 ~kf~~~fv~F~~~~~~~~g~~~li~~i  283 (435)
T PF03378_consen  257 EKFVKRFVVFLSLFAIKYGPDFLIQTI  283 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            5555566666666666666 5555444

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=91.36  E-value=29  Score=39.11  Aligned_cols=142  Identities=15%  Similarity=0.185  Sum_probs=95.5

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh----c---CCCChhhHHHHHHHHHHHHHHhcccc----hhhHHHH
Q 002658           53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYES----S---NDPKPAVKKESVRLLALVCELHSELT----STHVTKI  121 (896)
Q Consensus        53 sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es----~---ss~k~~vRKeAIllLG~IAeg~~d~I----~P~LpkI  121 (896)
                      -|.++-.+...-+.++-..+.+ .++.++..+.+.    .   -..-|..|..-..+|.++.+.|...+    .+.+..+
T Consensus        88 r~~evL~l~~~ii~kl~~~~~~-~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~  166 (319)
T PF08767_consen   88 REPEVLSLMATIINKLGELIQP-QVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLV  166 (319)
T ss_dssp             S-HHHHHHHHHHHHHHGGGCCC-CHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHH
T ss_pred             cChhHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHH
Confidence            3555666777677776665544 677777766554    2   23469999999999999999998764    4578999


Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCc----hhHhhhHHHHHHHHhcC-CH---hHHHHHHHHHHHHH
Q 002658          122 ISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNG----TVVGLFVKPLFEAMMEQ-NK---GVQSGAAMCMAKMV  193 (896)
Q Consensus       122 L~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~----~~~~~lL~pL~eaL~Eq-nk---~VQ~gAasALAkII  193 (896)
                      +..|+.+++++...|...|+.++..|...+.....+...    .++-.++.-+|..|.|. .+   ..|......|=.++
T Consensus       167 idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~v  246 (319)
T PF08767_consen  167 IDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLV  246 (319)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999651111111    23334445555555444 23   23443444444444


Q ss_pred             Hh
Q 002658          194 EC  195 (896)
Q Consensus       194 E~  195 (896)
                      |.
T Consensus       247 e~  248 (319)
T PF08767_consen  247 ES  248 (319)
T ss_dssp             HT
T ss_pred             Hc
Confidence            43

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=91.23  E-value=13  Score=46.48  Aligned_cols=147  Identities=16%  Similarity=0.116  Sum_probs=83.2

Q ss_pred             hhHhhhHHHHHHHHhcC-CHhHHHHHHHHHHHHHHhc-CCCC-chhHH--HHHHHHHHHhcCCch--hhHHHHHHHHHHH
Q 002658          161 TVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKMVECA-SDPP-VVAFQ--KLCARICKLLSNQNF--MAKASLLPVVGSL  233 (896)
Q Consensus       161 ~~~~~lL~pL~eaL~Eq-nk~VQ~gAasALAkIIE~a-~d~~-~~yL~--~LlPRL~kLLks~s~--kaK~alL~aIgSL  233 (896)
                      ..+..++.+|...+... +..   ..+.||..+-.-. ++.. ..++.  .|+|.|..+|.....  .+--.++-++|++
T Consensus       486 ~~f~~~i~~L~~~v~~~~~ee---~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtl  562 (708)
T PF05804_consen  486 ELFVDFIGDLAKIVSSGDSEE---FVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTL  562 (708)
T ss_pred             HHHHHHHHHHHHHhhcCCcHH---HHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence            45677889999888543 333   4444554444321 2222 34565  489999999975422  1222334455665


Q ss_pred             HhccccCcccH--HHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHHhcc-hHHHhh---HHHHHHHHHhhhcCCChhhHH
Q 002658          234 SQVGAIAPQSL--EPLLQSIHECLGS--TDWATRKAAADALSALALHSS-NLVIDG---ATSTLTVLEACRFDKIKPVRD  305 (896)
Q Consensus       234 A~vga~~~pyl--e~lLp~L~e~Lsd--dDW~lRKaA~EaLgsLA~avG-e~L~Py---~~~~I~~LE~~RfDKvKpVRD  305 (896)
                      +.-. ...+.+  ..+++.|.+.|..  +|-+   .++++++.....+- +.-..+   -.+++.+|-....||.++||.
T Consensus       563 a~d~-~~A~lL~~sgli~~Li~LL~~kqeDdE---~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~  638 (708)
T PF05804_consen  563 ASDP-ECAPLLAKSGLIPTLIELLNAKQEDDE---IVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRK  638 (708)
T ss_pred             HCCH-HHHHHHHhCChHHHHHHHHHhhCchHH---HHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHH
Confidence            4211 111111  2456666666654  3333   34555544443333 222222   266888999999999999999


Q ss_pred             HHHHHHHHH
Q 002658          306 SMNEALQLW  314 (896)
Q Consensus       306 aA~eALe~W  314 (896)
                      ++-.+|+..
T Consensus       639 ~~d~~Ldii  647 (708)
T PF05804_consen  639 VCDNALDII  647 (708)
T ss_pred             HHHHHHHHH
Confidence            988888763

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.17  E-value=1.8  Score=47.99  Aligned_cols=184  Identities=14%  Similarity=0.129  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHcC-CChhHHHHHHHHHHHHHhcCCCCCHH------------HHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002658           41 MKQKILTSLSKL-ADRDTHQIAIEDLEKTIQTLSQESLP------------MLLNCLYESSNDPKPAVKKESVRLLALVC  107 (896)
Q Consensus        41 Lk~rll~~L~KL-sDRDT~k~Aa~eLD~La~~L~pd~Lp------------~fLs~L~es~ss~k~~vRKeAIllLG~IA  107 (896)
                      ...-++.+|+++ .+.|+.+..+..++.+...-+ ....            +|-+++. .....++.+...+..+|+.++
T Consensus        56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~-~~~~~~~~~~~~~~~~~~~~fl~-ll~~~D~~i~~~a~~iLt~Ll  133 (312)
T PF03224_consen   56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP-SRVELFLELAKQDDSDPYSPFLK-LLDRNDSFIQLKAAFILTSLL  133 (312)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHHH-SS-SSHHHHHHHHH-TTH--HHHHHH-H-S-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHhcccccchhHHHHHH-HhcCCCHHHHHHHHHHHHHHH
Confidence            344455777888 889999999999999887533 2211            2223332 345678999999999999998


Q ss_pred             HHhcccch----hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHh-cccccCCchhHhhhHHHHHHHH-----hcC
Q 002658          108 ELHSELTS----THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYL-NGKEENNGTVVGLFVKPLFEAM-----MEQ  177 (896)
Q Consensus       108 eg~~d~I~----P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li-~~~~e~~~~~~~~lL~pL~eaL-----~Eq  177 (896)
                      ........    ..|+.++..+...++.++..+...|..+++.|.+.=. +..+     .-...+++|+..|     ...
T Consensus       134 ~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f-----~~~~~v~~l~~iL~~~~~~~~  208 (312)
T PF03224_consen  134 SQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVF-----WKSNGVSPLFDILRKQATNSN  208 (312)
T ss_dssp             TSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHH-----HTHHHHHHHHHHHH-------
T ss_pred             HcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHH-----HhcCcHHHHHHHHHhhcccCC
Confidence            87776654    4667777776666666777888899888888763210 0011     0134566677766     222


Q ss_pred             --CHhHHHHHHHHHHHHHHh--c-CCCCchhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHH
Q 002658          178 --NKGVQSGAAMCMAKMVEC--A-SDPPVVAFQKLCARICKLLSN-QNFMAKASLLPVVGSLS  234 (896)
Q Consensus       178 --nk~VQ~gAasALAkIIE~--a-~d~~~~yL~~LlPRL~kLLks-~s~kaK~alL~aIgSLA  234 (896)
                        +...|..++.|+=-+.=+  . ......+   ++|.|..+++. ..-|+--.++.++.-++
T Consensus       209 ~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~~KEKvvRv~la~l~Nl~  268 (312)
T PF03224_consen  209 SSGIQLQYQALLCLWLLSFEPEIAEELNKKY---LIPLLADILKDSIKEKVVRVSLAILRNLL  268 (312)
T ss_dssp             --HHHHHHHHHHHHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH--SHHHHHHHHHHHHHTT
T ss_pred             CCchhHHHHHHHHHHHHhcCHHHHHHHhccc---hHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence              455667888887644321  1 1111122   88889988874 44554445555555544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.05  E-value=22  Score=44.88  Aligned_cols=222  Identities=16%  Similarity=0.126  Sum_probs=127.3

Q ss_pred             CChhHHHHHHHHHHHHHhcC--------CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHH-HHHH
Q 002658           53 ADRDTHQIAIEDLEKTIQTL--------SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT-KIIS  123 (896)
Q Consensus        53 sDRDT~k~Aa~eLD~La~~L--------~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~Lp-kIL~  123 (896)
                      +|...+=.|+.+|=.+..--        +-+.|.+.|-.|+..  ..+.-.--.|+++|..+++.++..+.-.+. ..||
T Consensus       180 ~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~--E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIP  257 (1051)
T KOG0168|consen  180 SDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSH--EHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIP  257 (1051)
T ss_pred             CChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHhhccchhheeecccchH
Confidence            56656666777666554321        222333444444422  234666778999999999999987543222 3578


Q ss_pred             HHHHhhcCCC-hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCch
Q 002658          124 HIVKRLKDSD-SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVV  202 (896)
Q Consensus       124 ~IlrrLkDpD-s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~  202 (896)
                      .++.+|.--. -.|-..|..|+--|++.=-+.+.+.      --+...+..|.-=.-.+|-.|..--+.+|..++...-.
T Consensus       258 vl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~A------G~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~  331 (1051)
T KOG0168|consen  258 VLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQA------GALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFH  331 (1051)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccch
Confidence            8888876644 3567777777777765432211110      01222223332235678888888888899988766667


Q ss_pred             hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHH-----HHHHHHHhhCCC----CHHHHHHHHHHHHHH
Q 002658          203 AFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEP-----LLQSIHECLGST----DWATRKAAADALSAL  273 (896)
Q Consensus       203 yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~-----lLp~L~e~Lsdd----DW~lRKaA~EaLgsL  273 (896)
                      |+-..+|-|..+|.+..-|.-+...-|+.-++..-...+.-++.     +|....+.|.-.    +-.+--.++-+|..|
T Consensus       332 ~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~m  411 (1051)
T KOG0168|consen  332 FVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLM  411 (1051)
T ss_pred             HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHH
Confidence            88889999999999877665555555555555311112222222     222233333222    123445566677777


Q ss_pred             HHhcchHHH
Q 002658          274 ALHSSNLVI  282 (896)
Q Consensus       274 A~avGe~L~  282 (896)
                      +...+..|.
T Consensus       412 sS~~pl~~~  420 (1051)
T KOG0168|consen  412 SSGSPLLFR  420 (1051)
T ss_pred             ccCChHHHH
Confidence            766664443

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=90.70  E-value=0.31  Score=39.04  Aligned_cols=41  Identities=29%  Similarity=0.447  Sum_probs=31.1

Q ss_pred             HHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 002658          102 LLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSI  144 (896)
Q Consensus       102 lLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aL  144 (896)
                      +|+.+++.-+..+.  .+.|+..|.++|.|+++.||.||.+.|
T Consensus         2 ~l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~ll   42 (42)
T PF12765_consen    2 ALSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDLL   42 (42)
T ss_pred             hHHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence            45556655554443  358899999999999999999998764

>KOG1837 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.67  E-value=9.8  Score=50.38  Aligned_cols=222  Identities=14%  Similarity=0.051  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcC-------CCChhhHHHHHHHH-HHHHHHhcccchhhHHHHHHHHHHh
Q 002658           57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSN-------DPKPAVKKESVRLL-ALVCELHSELTSTHVTKIISHIVKR  128 (896)
Q Consensus        57 T~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~s-------s~k~~vRKeAIllL-G~IAeg~~d~I~P~LpkIL~~Ilrr  128 (896)
                      +.+++....-.++..|....|.+++..+.+--.       ..+..-|--...-| -.+++.+.--+.||..+++--++-.
T Consensus      1365 ~E~sV~~~~v~~v~klse~~FRplf~~l~~WA~~~~~~~a~~~~~~Rli~fy~f~~~l~esl~si~~pYf~~~l~~~~~~ 1444 (1621)
T KOG1837|consen 1365 LERSVQNKAVAKVLKLSESTFRPLFSPLFDWAEPGLEAKAEQKCLERLISFYHFADYLQESLKSIVTPYFGYLLEPRVIL 1444 (1621)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            555666666667766666557666666654321       22233333322222 2234444455788888888766665


Q ss_pred             hcCCC------------hHHHHHHHHHHHHHHHHHhccccc--CC-----chhHhhhHHHHHHHHhc----C--CHhHHH
Q 002658          129 LKDSD------------SGMKEACRDSIGSLSKLYLNGKEE--NN-----GTVVGLFVKPLFEAMME----Q--NKGVQS  183 (896)
Q Consensus       129 LkDpD------------s~VR~Ac~~aLG~LA~~li~~~~e--~~-----~~~~~~lL~pL~eaL~E----q--nk~VQ~  183 (896)
                      |+--+            ...|  -++..|+|+-.+....+.  -+     .+....+..|+...+..    .  ...|-.
T Consensus      1445 L~k~n~s~~~~~~~~~~~~~r--~~~~~~~Lvl~cl~~~~~~Dt~~~f~t~~r~~~~~~p~v~ql~n~~~e~~~~~~v~~ 1522 (1621)
T KOG1837|consen 1445 LKKINASKHRWFWLLPVNQSR--KPLLLGTLVLNCLKDLFLFDTIESFVTKSRFELLSYPLVSQLVNVLLEFYASDIVSK 1522 (1621)
T ss_pred             HHHhhhhhhhhhhhhcccccc--hhHHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhHHHHHHhhccchhhhHHHH
Confidence            55433            2334  566677777666553211  00     02233444555555522    1  122333


Q ss_pred             HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHHhhCCCCHHH
Q 002658          184 GAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGSTDWAT  262 (896)
Q Consensus       184 gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vga~~~pyle~lLp~L~e~LsddDW~l  262 (896)
                      ....|++.+--.+++.    +.+|..++++-..+.+.++|-.+|-.+-.+.. .|....+.+..++|.|-+.+.|++-++
T Consensus      1523 ~li~~i~~~~~a~~~d----~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~V 1598 (1621)
T KOG1837|consen 1523 LLIAEIASDSVADKDD----LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEV 1598 (1621)
T ss_pred             HHHHHHHhhccCChhh----hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHH
Confidence            4444444433222332    66677777777777788888888877777764 566677889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcchHHHhh
Q 002658          263 RKAAADALSALALHSSNLVIDG  284 (896)
Q Consensus       263 RKaA~EaLgsLA~avGe~L~Py  284 (896)
                      -..+.+.+-.+=...|+.|..|
T Consensus      1599 e~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1599 ECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred             HHHHHHHHHHHHHHhchhhhhc
Confidence            8888888888888888877665

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=90.61  E-value=26  Score=40.86  Aligned_cols=107  Identities=16%  Similarity=0.125  Sum_probs=70.8

Q ss_pred             cCCHhHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHh
Q 002658          176 EQNKGVQSGAAMCMAKMVECAS-DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHEC  254 (896)
Q Consensus       176 Eqnk~VQ~gAasALAkIIE~a~-d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~  254 (896)
                      -.|..-|..-..=|..+++..+ .....+...|+.++.+++.++|+++=..+|.....-.-+ ..+..+-..++|.++..
T Consensus       266 ~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~-~li~~~~~~i~p~i~~~  344 (409)
T PF01603_consen  266 KTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFL-SLISQNSRVILPIIFPA  344 (409)
T ss_dssp             SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHH-HHHHCTHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHH-HHHHhChHHHHHHHHHH
Confidence            3466666666666677776543 233457788999999999999999866555543322101 12345556777777776


Q ss_pred             hCC---C--CHHHHHHHHHHHHHHHHhcchHHHh
Q 002658          255 LGS---T--DWATRKAAADALSALALHSSNLVID  283 (896)
Q Consensus       255 Lsd---d--DW~lRKaA~EaLgsLA~avGe~L~P  283 (896)
                      |..   .  +..+|..|+.+|..+...-++.|..
T Consensus       345 L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~  378 (409)
T PF01603_consen  345 LYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK  378 (409)
T ss_dssp             HSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            543   2  4459999999999999988887664

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=90.56  E-value=28  Score=37.45  Aligned_cols=186  Identities=13%  Similarity=0.094  Sum_probs=107.1

Q ss_pred             CCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHH
Q 002658           89 NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK  168 (896)
Q Consensus        89 ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~  168 (896)
                      ...++......+.+|..++. |.  - +..+.++..|......+...++..+...+..+-..=   .     ..+ .++.
T Consensus        11 ~~~~~~~~~~~L~~L~~l~~-~~--~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~---~-----r~f-~~L~   77 (234)
T PF12530_consen   11 KISDPELQLPLLEALPSLAC-HK--N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN---D-----RHF-PFLQ   77 (234)
T ss_pred             CCCChHHHHHHHHHHHHHhc-cC--c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC---c-----hHH-HHHH
Confidence            34556666666666666554 22  2 556667777777777777777555544444333322   1     223 3555


Q ss_pred             HHHHHH----------hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh-cCCchhhHHHHHHHHHHHHhcc
Q 002658          169 PLFEAM----------MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLL-SNQNFMAKASLLPVVGSLSQVG  237 (896)
Q Consensus       169 pL~eaL----------~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLL-ks~s~kaK~alL~aIgSLA~vg  237 (896)
                      +++..+          .+.....+.+.+.++..+|...++    +=..|++.+..+| ++....+++.++++|.++-...
T Consensus        78 ~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~  153 (234)
T PF12530_consen   78 PLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE  153 (234)
T ss_pred             HHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence            554441          123556778889999999997655    4556888888999 6777778889999999986422


Q ss_pred             -ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc------hHHHhhHHHHHHHHHhhhcC
Q 002658          238 -AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS------NLVIDGATSTLTVLEACRFD  298 (896)
Q Consensus       238 -a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG------e~L~Py~~~~I~~LE~~RfD  298 (896)
                       -.+....    ..|...|..   ..|-.....|..+...++      +.+.-+...++..+=.....
T Consensus       154 vvd~~s~w----~vl~~~l~~---~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~  214 (234)
T PF12530_consen  154 VVDFYSAW----KVLQKKLSL---DYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSS  214 (234)
T ss_pred             hccHHHHH----HHHHHhcCC---ccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccc
Confidence             1122222    334444433   223334444444433333      34555567777766433333

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=90.43  E-value=2.6  Score=53.00  Aligned_cols=126  Identities=13%  Similarity=0.218  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCCh
Q 002658           57 THQIAIEDLEKTIQTLSQES-LPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDS  134 (896)
Q Consensus        57 T~k~Aa~eLD~La~~L~pd~-Lp~fLs~L~es~-ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs  134 (896)
                      .+..+.-.|-++..  ..+. .-.+|+.|...+ -+....+|.--+.+++-+|..|--.+.-|    +|.|-.+|+||++
T Consensus       947 vra~~vvTlakmcL--ah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~Y----iP~I~~~L~Dp~~ 1020 (1529)
T KOG0413|consen  947 VRAVGVVTLAKMCL--AHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRY----IPMIAASLCDPSV 1020 (1529)
T ss_pred             HHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHh----hHHHHHHhcCchH
Confidence            55556655655554  2222 222455554333 23456788888889988888665444444    5677889999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002658          135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC  195 (896)
Q Consensus       135 ~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~  195 (896)
                      .||..+.-.|++|...-+-       ..-..++-..+-+|.+.++.+..-|=-||+.++..
T Consensus      1021 iVRrqt~ilL~rLLq~~~v-------Kw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1021 IVRRQTIILLARLLQFGIV-------KWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred             HHHHHHHHHHHHHHhhhhh-------hcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence            9999988887777655421       11122333444555677888888888889998875

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=90.37  E-value=2.5  Score=51.68  Aligned_cols=188  Identities=17%  Similarity=0.136  Sum_probs=121.3

Q ss_pred             hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002658          115 STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE  194 (896)
Q Consensus       115 ~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE  194 (896)
                      .+|-.+|+|+|++.++-+|-.||-.-..-+-.+..++.++      .+-..++|-+...+.+.|+.+.+-..-|++-++.
T Consensus       325 ~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~------~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~  398 (690)
T KOG1243|consen  325 EEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQ------ILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP  398 (690)
T ss_pred             cccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHH------hhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence            3477889999999999999999999999888888888543      3456788888888999999999888887777776


Q ss_pred             hcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCccc-HHHHHHH-HHHhhCCCCHHHHHHHHHHHHH
Q 002658          195 CASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQS-LEPLLQS-IHECLGSTDWATRKAAADALSA  272 (896)
Q Consensus       195 ~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~py-le~lLp~-L~e~LsddDW~lRKaA~EaLgs  272 (896)
                      .....  ..-..|+-.|.++-.+.+-.+|..--.|+|-++.   ...+. -..++.. ....+.|+-...|+++...|.+
T Consensus       399 kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~---~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~a  473 (690)
T KOG1243|consen  399 KLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAP---HLAASVRKRVLASAFTRALKDPFVPARKAGVLALAA  473 (690)
T ss_pred             hhchh--hhcHHHHHHHHhhCccccCcccccceeeeccccc---ccchhhhccccchhhhhhhcCCCCCchhhhhHHHhh
Confidence            54322  1112344444444343444455443444444321   00000 1122222 2224677777889998888765


Q ss_pred             HHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 002658          273 LALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWK  315 (896)
Q Consensus       273 LA~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK  315 (896)
                      .-....  ...-..+++..|.-...|..+-||+.|..+++-..
T Consensus       474 t~~~~~--~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl  514 (690)
T KOG1243|consen  474 TQEYFD--QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL  514 (690)
T ss_pred             cccccc--hhhhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence            544443  11224667777777788999999998666555433

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=90.31  E-value=11  Score=43.43  Aligned_cols=165  Identities=17%  Similarity=0.239  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHhc-c-c--chhhHHHHHHHH-HHhhc--CC--------------------C-hHHHHHHHHHHHHHHHH
Q 002658           99 SVRLLALVCELHS-E-L--TSTHVTKIISHI-VKRLK--DS--------------------D-SGMKEACRDSIGSLSKL  150 (896)
Q Consensus        99 AIllLG~IAeg~~-d-~--I~P~LpkIL~~I-lrrLk--Dp--------------------D-s~VR~Ac~~aLG~LA~~  150 (896)
                      |+.-|..+++... . .  ..|||..|+..| ++.|.  |.                    | ...|.||++-+-.|++.
T Consensus       162 al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~  241 (370)
T PF08506_consen  162 ALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKK  241 (370)
T ss_dssp             HHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHH
Confidence            5556666655432 2 2  268899888744 33322  11                    1 35688999999999988


Q ss_pred             HhcccccCCchhHhhhHHHHHHHH---hcCCHhHHHHHHHHHHHHHHhc---CC------CCchhHH----HHHHHHHHH
Q 002658          151 YLNGKEENNGTVVGLFVKPLFEAM---MEQNKGVQSGAAMCMAKMVECA---SD------PPVVAFQ----KLCARICKL  214 (896)
Q Consensus       151 li~~~~e~~~~~~~~lL~pL~eaL---~Eqnk~VQ~gAasALAkIIE~a---~d------~~~~yL~----~LlPRL~kL  214 (896)
                      .-+..    ...+..++..++...   ...|+....+|..-+..+.-..   ..      ...+..+    .++|-|. -
T Consensus       242 ~~~~v----~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~  316 (370)
T PF08506_consen  242 FEKQV----TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-P  316 (370)
T ss_dssp             HHHHH----HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--
T ss_pred             HhHHH----HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-c
Confidence            83321    122223333333322   1346777788877776666543   11      1112222    3445544 1


Q ss_pred             hcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002658          215 LSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADAL  270 (896)
Q Consensus       215 Lks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaL  270 (896)
                      -.+.+.-.|+-++..|..+..  ..-.+.+..++|.|..+|.+++--++.-|+-|+
T Consensus       317 ~~~~~piLka~aik~~~~Fr~--~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  317 DVNSHPILKADAIKFLYTFRN--QLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             SS-S-HHHHHHHHHHHHHHGG--GS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             cCCCCcchHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            113455677788888888754  334568889999999999999999988887764

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.20  E-value=59  Score=40.64  Aligned_cols=158  Identities=13%  Similarity=0.167  Sum_probs=107.2

Q ss_pred             CCCCCcchhhhHhHHHHHHHHHHHHHcC---CC---hhHHHHHHHHHHHHHhcCCCCC--HHHHHHHHhhhcCCCChhhH
Q 002658           25 NASRSSSLSSHLAMVEMKQKILTSLSKL---AD---RDTHQIAIEDLEKTIQTLSQES--LPMLLNCLYESSNDPKPAVK   96 (896)
Q Consensus        25 ~~~~~~~~s~~~~~~~Lk~rll~~L~KL---sD---RDT~k~Aa~eLD~La~~L~pd~--Lp~fLs~L~es~ss~k~~vR   96 (896)
                      ++.++.-+++...+++.-++++.-+.+-   .+   +......+-+.-.++-+++++.  +...+..|.+.+++..+..|
T Consensus       267 ~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiR  346 (938)
T KOG1077|consen  267 IYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIR  346 (938)
T ss_pred             hCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccch
Confidence            3456667788888888888877766633   22   2244455667777777787543  88889999999988888888


Q ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh
Q 002658           97 KESVRLLALVCELHSELTSTHVTKIISHIVKRLK-DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM  175 (896)
Q Consensus        97 KeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLk-DpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~  175 (896)
                      --++-.+..++..  +....-+.+=...|+..|+ ++|..||+-+++.+=.++..-          ....++.-|+..|.
T Consensus       347 YLaLEsm~~L~ss--~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~----------Nak~IV~elLqYL~  414 (938)
T KOG1077|consen  347 YLALESMCKLASS--EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVS----------NAKQIVAELLQYLE  414 (938)
T ss_pred             hhhHHHHHHHHhc--cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchh----------hHHHHHHHHHHHHh
Confidence            7776666655553  3333333344677888899 999999999999887766543          24567777778886


Q ss_pred             cCCHhHHHHHHHHHHHHHH
Q 002658          176 EQNKGVQSGAAMCMAKMVE  194 (896)
Q Consensus       176 Eqnk~VQ~gAasALAkIIE  194 (896)
                      .-+...++-.+.=.|-+-|
T Consensus       415 tAd~sireeivlKvAILaE  433 (938)
T KOG1077|consen  415 TADYSIREEIVLKVAILAE  433 (938)
T ss_pred             hcchHHHHHHHHHHHHHHH
Confidence            5555555544444444444

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=90.15  E-value=48  Score=41.54  Aligned_cols=198  Identities=15%  Similarity=0.115  Sum_probs=123.9

Q ss_pred             cCCCChhhHHHHHHHHHHHHHHhc------ccchhhHHHHHHH-HHHhhc-----------CCChHHHH-----------
Q 002658           88 SNDPKPAVKKESVRLLALVCELHS------ELTSTHVTKIISH-IVKRLK-----------DSDSGMKE-----------  138 (896)
Q Consensus        88 ~ss~k~~vRKeAIllLG~IAeg~~------d~I~P~LpkIL~~-IlrrLk-----------DpDs~VR~-----------  138 (896)
                      .+.+-|..- .++..++.-.+.|-      ..+.|||..|+.. |.+.|+           ||+--+|.           
T Consensus       308 gqgqLWlsd-~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~sp  386 (970)
T COG5656         308 GQGQLWLSD-IELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSP  386 (970)
T ss_pred             hcCCeecch-HHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCCh
Confidence            344444433 35555566555554      4589999999984 555554           33334432           


Q ss_pred             --HHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh--------cCCHhHHHHHHHHHHHHHHhc--CCCCchhHH-
Q 002658          139 --ACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM--------EQNKGVQSGAAMCMAKMVECA--SDPPVVAFQ-  205 (896)
Q Consensus       139 --Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~--------Eqnk~VQ~gAasALAkIIE~a--~d~~~~yL~-  205 (896)
                        |+...+..+.       ...++..+..+++-+...|+        ..|+..-+||.--|+.+..-.  ..+....++ 
T Consensus       387 dlaal~fl~~~~-------sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~  459 (970)
T COG5656         387 DLAALFFLIISK-------SKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEY  459 (970)
T ss_pred             hHHHHHHHHHHh-------cccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHH
Confidence              1111111111       11123446677777777772        136667789999999988832  222223343 


Q ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHh
Q 002658          206 KLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS--NLVID  283 (896)
Q Consensus       206 ~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG--e~L~P  283 (896)
                      .+++.+++.++++..-.|.-+...|+.+. ..=.-...+-.+......|+.+.+..++..|+.+|..+....-  +++..
T Consensus       460 fiv~hv~P~f~s~ygfL~Srace~is~~e-eDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sa  538 (970)
T COG5656         460 FIVNHVIPAFRSNYGFLKSRACEFISTIE-EDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSA  538 (970)
T ss_pred             HHHHHhhHhhcCcccchHHHHHHHHHHHH-HhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHh
Confidence            58899999999987777777777787772 1100122233444455567778999999999999999877665  88999


Q ss_pred             hHHHHHHHHHh
Q 002658          284 GATSTLTVLEA  294 (896)
Q Consensus       284 y~~~~I~~LE~  294 (896)
                      |++.+|+-|..
T Consensus       539 hVp~tmekLLs  549 (970)
T COG5656         539 HVPETMEKLLS  549 (970)
T ss_pred             hhhHHHHHHHH
Confidence            99988886653

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.83  E-value=31  Score=46.84  Aligned_cols=193  Identities=16%  Similarity=0.168  Sum_probs=124.5

Q ss_pred             HHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHH-HHHHHHHHHHHHHHHhcccccCC
Q 002658           81 LNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM-KEACRDSIGSLSKLYLNGKEENN  159 (896)
Q Consensus        81 Ls~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~V-R~Ac~~aLG~LA~~li~~~~e~~  159 (896)
                      +.++...+...+|..|=.+..+++.++-..++  .|++..+..+++..|++.+..| |---.-++|.|-++.   +.-+.
T Consensus       878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~--~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyv---gs~~s  952 (2067)
T KOG1822|consen  878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGS--APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYV---GSIGS  952 (2067)
T ss_pred             HHHHhhhhccCChHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc---cCCCC
Confidence            33344445678899998888888888876665  4567788899999999976544 666677888888888   33334


Q ss_pred             chhHhhhHHHHHHHHhcC-CHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC-CchhhHH--HHHHH------
Q 002658          160 GTVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSN-QNFMAKA--SLLPV------  229 (896)
Q Consensus       160 ~~~~~~lL~pL~eaL~Eq-nk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks-~s~kaK~--alL~a------  229 (896)
                      +++...-+-.|+....|. .|.||.-+..||+-+++........|....+--+.++|-+ +...+..  ..=.|      
T Consensus       953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen  953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred             chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence            455665555666666554 5699999999999999987655556666666666666644 4433221  11111      


Q ss_pred             HHHHH-hccccC---------cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002658          230 VGSLS-QVGAIA---------PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS  278 (896)
Q Consensus       230 IgSLA-~vga~~---------~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG  278 (896)
                      ++.++ .+|...         .-|...++-...=.+..+|.-.-.+|+.||-.+....+
T Consensus      1033 ~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFap 1091 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAP 1091 (2067)
T ss_pred             HHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcc
Confidence            11332 133222         11222222222223566788888999999999998877

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=89.62  E-value=4.2  Score=38.94  Aligned_cols=72  Identities=17%  Similarity=0.325  Sum_probs=56.8

Q ss_pred             hhHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcC--CHhHHHHHHHHHHHH
Q 002658          116 THVTKIISHIVKRLK-DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ--NKGVQSGAAMCMAKM  192 (896)
Q Consensus       116 P~LpkIL~~IlrrLk-DpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eq--nk~VQ~gAasALAkI  192 (896)
                      .+++.|+|++.++|+ -..+..|-+|.-.++.|+...   ..      -+.++..|++.+...  ....+.-+..||..+
T Consensus         2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~---~L------~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l   72 (121)
T PF12397_consen    2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV---PL------SDEVLNALMESILKNWTQETVQRQALICLIVL   72 (121)
T ss_pred             cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc---CC------cHHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence            478999999999999 778899999999999999999   22      456777788887322  222246799999999


Q ss_pred             HHhc
Q 002658          193 VECA  196 (896)
Q Consensus       193 IE~a  196 (896)
                      ++.-
T Consensus        73 ~q~q   76 (121)
T PF12397_consen   73 CQSQ   76 (121)
T ss_pred             HHcc
Confidence            9754

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=89.60  E-value=1.8  Score=44.73  Aligned_cols=98  Identities=13%  Similarity=0.255  Sum_probs=77.2

Q ss_pred             cchhhHHHHHHHHHHhhcCC-C-----------------hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH
Q 002658          113 LTSTHVTKIISHIVKRLKDS-D-----------------SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM  174 (896)
Q Consensus       113 ~I~P~LpkIL~~IlrrLkDp-D-----------------s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL  174 (896)
                      .+.|||+.|+|.|..-+.=. +                 -.+|.+|-+++-++-..+...      -.+..|+..+...|
T Consensus         2 li~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~------~~~~~~~~~v~~GL   75 (169)
T PF08623_consen    2 LIRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSR------IDISEFLDRVEAGL   75 (169)
T ss_dssp             GTTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSS------S-HHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHh------CCHHHHHHHHHhhc
Confidence            57899999999999776542 2                 478999999999998876432      12667888888888


Q ss_pred             hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC
Q 002658          175 MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSN  217 (896)
Q Consensus       175 ~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks  217 (896)
                      .| ...++.-++.-|.+++...+......|+.|++.|-+.|+.
T Consensus        76 ~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~  117 (169)
T PF08623_consen   76 KD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK  117 (169)
T ss_dssp             SS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred             CC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence            88 8899999999999999988777777788899999988864

; PDB: 4A0C_A 1U6G_C.

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=89.54  E-value=2.6  Score=40.42  Aligned_cols=89  Identities=13%  Similarity=0.128  Sum_probs=68.0

Q ss_pred             hHHHHHHHHHHHhcCCc----hhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002658          203 AFQKLCARICKLLSNQN----FMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS  277 (896)
Q Consensus       203 yL~~LlPRL~kLLks~s----~kaK~alL~aIgSLA~vg-a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~av  277 (896)
                      ++=-++.++...+++.+    +.-|..+|.+|+-++.++ .....+...++.+|...|..  .++|..|++|...+...+
T Consensus         8 ~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L   85 (107)
T smart00802        8 HFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTL   85 (107)
T ss_pred             HHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhC
Confidence            34456777888887754    334667888999988743 55566777788888888875  459999999999999999


Q ss_pred             c-hHHHhhHHHHHHHHH
Q 002658          278 S-NLVIDGATSTLTVLE  293 (896)
Q Consensus       278 G-e~L~Py~~~~I~~LE  293 (896)
                      . +.+.|.+++++-++.
T Consensus        86 ~~~~l~~ll~~~~~~i~  102 (107)
T smart00802       86 KEEELGPLLDQIFAAIL  102 (107)
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            9 778888888877664

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=89.42  E-value=9.1  Score=48.97  Aligned_cols=144  Identities=13%  Similarity=0.141  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHcC-C-ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccc-h
Q 002658           39 VEMKQKILTSLSKL-A-DRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT-S  115 (896)
Q Consensus        39 ~~Lk~rll~~L~KL-s-DRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I-~  115 (896)
                      .+||.-|+.+-+|+ + |...|.      |.+-..    .+--|+..|.+ .+...+..|-.|...|+.++.++.-.- .
T Consensus       526 ~ELrpiLVFIWAKILAvD~SCQ~------dLvKe~----g~~YF~~vL~~-~~~~~~EqrtmaAFVLAviv~nf~lGQ~a  594 (1387)
T KOG1517|consen  526 RELRPILVFIWAKILAVDPSCQA------DLVKEN----GYKYFLQVLDP-SQAIPPEQRTMAAFVLAVIVRNFKLGQKA  594 (1387)
T ss_pred             HhhhhhHHHHHHHHHhcCchhHH------HHHhcc----CceeEEEEecC-cCCCCHHHHHHHHHHHHHHHcccchhHHH
Confidence            57777777777777 3 432221      111110    11112222222 133446788899999999999977442 2


Q ss_pred             hhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002658          116 THVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE  194 (896)
Q Consensus       116 P~LpkIL~~IlrrLkD-pDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE  194 (896)
                      -.-..+|...+..|.| +++.+|+=+|-+||+|=+.+...-..   ..-......|+..|.|+.+.|-.||.-||..++.
T Consensus       595 cl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~---G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~  671 (1387)
T KOG1517|consen  595 CLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS---GRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLS  671 (1387)
T ss_pred             hccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc---cccccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence            2224457889999999 58999999999999998877321110   1122345677888889999999999999999999


Q ss_pred             hc
Q 002658          195 CA  196 (896)
Q Consensus       195 ~a  196 (896)
                      +.
T Consensus       672 ~~  673 (1387)
T KOG1517|consen  672 NG  673 (1387)
T ss_pred             cc
Confidence            74

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=89.29  E-value=7.8  Score=48.24  Aligned_cols=118  Identities=17%  Similarity=0.107  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcC
Q 002658           98 ESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ  177 (896)
Q Consensus        98 eAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eq  177 (896)
                      .|+.+|.++++-..--..=+-..|++.+++.|...+..+.-.+...|..|+-+--..    ..-.-..++++|...+..+
T Consensus       268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK----~~m~~~giV~kL~kLl~s~  343 (708)
T PF05804_consen  268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENK----DEMAESGIVEKLLKLLPSE  343 (708)
T ss_pred             HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH----HHHHHcCCHHHHHHHhcCC
Confidence            355667777775443322234667888899998777777777777777776333110    0011234788899999888


Q ss_pred             CHhHHHHHHHHHHHHHHhcCCCCch-hHH-HHHHHHHHHhcCCchh
Q 002658          178 NKGVQSGAAMCMAKMVECASDPPVV-AFQ-KLCARICKLLSNQNFM  221 (896)
Q Consensus       178 nk~VQ~gAasALAkIIE~a~d~~~~-yL~-~LlPRL~kLLks~s~k  221 (896)
                      +..++..+...|..+..+..  ... .+. .++|+|..+|++++++
T Consensus       344 ~~~l~~~aLrlL~NLSfd~~--~R~~mV~~GlIPkLv~LL~d~~~~  387 (708)
T PF05804_consen  344 NEDLVNVALRLLFNLSFDPE--LRSQMVSLGLIPKLVELLKDPNFR  387 (708)
T ss_pred             CHHHHHHHHHHHHHhCcCHH--HHHHHHHCCCcHHHHHHhCCCchH
Confidence            88888888888877765421  112 222 2778888889877654

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=88.83  E-value=29  Score=42.37  Aligned_cols=177  Identities=9%  Similarity=0.153  Sum_probs=106.1

Q ss_pred             hhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHh
Q 002658           85 YESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVG  164 (896)
Q Consensus        85 ~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~  164 (896)
                      +...+..-...||.+-.++...   ..+.+...+-+++..|+..=+.|.  +-+-...-+.++..+.... .+++.+.+.
T Consensus        17 f~k~Q~s~aGhrk~~a~l~~~~---t~~~f~~~flr~vn~IL~~Kk~~s--i~dRil~fl~~f~~Y~~~~-dpeg~~~V~   90 (885)
T COG5218          17 FNKIQQSSAGHRKSLAELMEML---TAHEFSEEFLRVVNTILACKKNPS--IPDRILSFLKRFFEYDMPD-DPEGEELVA   90 (885)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHH---HHHhhHHHHHHHHHHhhccccCCC--cHHHHHHHHHHHHHhcCCC-ChhhhHHHH
Confidence            3444444567888888777766   223444555566666666655443  3333444566666655332 223456677


Q ss_pred             hhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccH
Q 002658          165 LFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSL  244 (896)
Q Consensus       165 ~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyl  244 (896)
                      .++.-++..+..++++|..-.|.-|+.+.++.++.+....+-|+.+|.+-+=+.-..+|-.++-|+.-+-... .-..  
T Consensus        91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~-~nee--  167 (885)
T COG5218          91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME-LNEE--  167 (885)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc-CChH--
Confidence            7777777777889999999999999999999877666666667777766554444445555566665553211 1111  


Q ss_pred             HHHHHHHHHhhC-CCCHHHHHHHHHHH
Q 002658          245 EPLLQSIHECLG-STDWATRKAAADAL  270 (896)
Q Consensus       245 e~lLp~L~e~Ls-ddDW~lRKaA~EaL  270 (896)
                      ..+...|...+. |+.-++|+.|+-.|
T Consensus       168 n~~~n~l~~~vqnDPS~EVRr~allni  194 (885)
T COG5218         168 NRIVNLLKDIVQNDPSDEVRRLALLNI  194 (885)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence            112223333333 45667777776543

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=88.64  E-value=55  Score=38.21  Aligned_cols=217  Identities=11%  Similarity=0.087  Sum_probs=135.6

Q ss_pred             CCChhhHHHHHHHHHHHHHHhcc-cchhhHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhH
Q 002658           90 DPKPAVKKESVRLLALVCELHSE-LTSTHVT-KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFV  167 (896)
Q Consensus        90 s~k~~vRKeAIllLG~IAeg~~d-~I~P~Lp-kIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL  167 (896)
                      ++.|+.-.-+...|-...+.... ....|+. +.+-.++..|.-+|+.-|+.....+-++-......    -.-+...+-
T Consensus       101 e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~----r~~Ir~~i~  176 (409)
T PF01603_consen  101 EPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNL----RSFIRKSIN  176 (409)
T ss_dssp             -TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTT----HHHHHHHHH
T ss_pred             ccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHH
Confidence            44577666666666666555442 2233443 67888999999999999999999999887776332    012233344


Q ss_pred             HHHHHHHhcC-CHhHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhcCCchhh-HHHHHHHHHHHHhccccCcccH
Q 002658          168 KPLFEAMMEQ-NKGVQSGAAMCMAKMVECASDPP-VVAFQKLCARICKLLSNQNFMA-KASLLPVVGSLSQVGAIAPQSL  244 (896)
Q Consensus       168 ~pL~eaL~Eq-nk~VQ~gAasALAkIIE~a~d~~-~~yL~~LlPRL~kLLks~s~ka-K~alL~aIgSLA~vga~~~pyl  244 (896)
                      ..|++.+.+. ....-.-...-|..++.+...+. .++...+.--|+++.+.+++.. ...+..|+..+..   .-+...
T Consensus       177 ~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~---kdp~l~  253 (409)
T PF01603_consen  177 NIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLE---KDPSLA  253 (409)
T ss_dssp             HHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHH---H-GGGH
T ss_pred             HHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH---hCchhH
Confidence            4444555433 33344445556667776643333 3466667777788888876653 4567777777653   334456


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 002658          245 EPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKK  316 (896)
Q Consensus       245 e~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~  316 (896)
                      ..++..|+..-.-.+..---.-++-|..|....+ +.|.....++.+.+-.|-.-..-   .+|.+||.+|..
T Consensus       254 ~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~---qVAErAl~~w~n  323 (409)
T PF01603_consen  254 EPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHF---QVAERALYFWNN  323 (409)
T ss_dssp             HHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSH---HHHHHHHGGGGS
T ss_pred             HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHCC
Confidence            6777777777555555555566677888888777 77888888888888777766665   578889999975

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=88.62  E-value=22  Score=42.85  Aligned_cols=189  Identities=11%  Similarity=0.100  Sum_probs=115.4

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHH-HHHHHHHHHHHHHhccc
Q 002658           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKE-ACRDSIGSLSKLYLNGK  155 (896)
Q Consensus        77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~-Ac~~aLG~LA~~li~~~  155 (896)
                      +..|+.-|.+..-+.++..|++|+..|.+-.-     +-..||+++-+|-....-.-. .|+ .-...+.+++.-+.+..
T Consensus       205 lQlYy~~It~a~~g~~~~~r~eAL~sL~TDsG-----L~~LlPyFv~fIae~vs~ni~-~~nL~lL~~lm~m~rSLl~Np  278 (576)
T KOG2549|consen  205 LQLYYKEITEACTGSDEPLRQEALQSLETDSG-----LQQLLPYFVTFIAEGVSVNIV-QNNLELLIYLMRMVRSLLDNP  278 (576)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhhccCcc-----HHHHHHHHHHHHhhheeeccc-cccHHHHHHHHHHHHHHhcCC
Confidence            56777777777667888999999988855332     445556666666555543311 122 23345777777777754


Q ss_pred             ccCCchhHhhhHHHHHHHHhc----------CCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHH
Q 002658          156 EENNGTVVGLFVKPLFEAMME----------QNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKAS  225 (896)
Q Consensus       156 ~e~~~~~~~~lL~pL~eaL~E----------qnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~a  225 (896)
                      .-..+.++..++|.|+.++..          +...+-..||.-|..+|..-.+.-...-..+...|.++|.++. +.=..
T Consensus       279 ~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~-~~~st  357 (576)
T KOG2549|consen  279 NIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNK-KPLST  357 (576)
T ss_pred             ccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCC-CCchh
Confidence            334568899999999999843          2455778899999999987655433333345555666665441 12235


Q ss_pred             HHHHHHHHHhcc-----ccCcccHHHHHHHHHHhhCC----------CCHHHHHHHHHHHHH
Q 002658          226 LLPVVGSLSQVG-----AIAPQSLEPLLQSIHECLGS----------TDWATRKAAADALSA  272 (896)
Q Consensus       226 lL~aIgSLA~vg-----a~~~pyle~lLp~L~e~Lsd----------dDW~lRKaA~EaLgs  272 (896)
                      .|++|..++..|     ....|.+..+--.|..-+..          +.|.++.+-.+++..
T Consensus       358 ~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~  419 (576)
T KOG2549|consen  358 HYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENP  419 (576)
T ss_pred             hhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhH
Confidence            677777776554     12355555555444443322          235555555555554

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=88.61  E-value=7.3  Score=46.90  Aligned_cols=168  Identities=15%  Similarity=0.145  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHh
Q 002658           96 KKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM  175 (896)
Q Consensus        96 RKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~  175 (896)
                      .+.....|..++......-.+.|..+...+...-  ....+|.+-.++|++....-              -+.-+.+.+.
T Consensus       342 ~~~~~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~--------------av~~i~~~I~  405 (618)
T PF01347_consen  342 SKETLSKFSRLVRLLRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNP--------------AVKFIKDLIK  405 (618)
T ss_dssp             -TTHHHHHHHHHHHHTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHH--------------HHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHH
Confidence            3444444666666555554444444443322221  25667777777766533222              2233344443


Q ss_pred             cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC----chhhHHHHHHHHHHHHh-cc-------------
Q 002658          176 EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ----NFMAKASLLPVVGSLSQ-VG-------------  237 (896)
Q Consensus       176 Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~----s~kaK~alL~aIgSLA~-vg-------------  237 (896)
                      . ++--..-|+..|..+.-....+..++    +..+..+++++    +..++..++-++++++. ..             
T Consensus       406 ~-~~~~~~ea~~~l~~l~~~~~~Pt~e~----l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~  480 (618)
T PF01347_consen  406 S-KKLTDDEAAQLLASLPFHVRRPTEEL----LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCS  480 (618)
T ss_dssp             T-T-S-HHHHHHHHHHHHHT-----HHH----HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------
T ss_pred             c-CCCCHHHHHHHHHHHHhhcCCCCHHH----HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccc
Confidence            2 22222224444555555444444344    44445555543    34567777878888862 11             


Q ss_pred             -ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhh
Q 002658          238 -AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDG  284 (896)
Q Consensus       238 -a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG-e~L~Py  284 (896)
                       .....|++.+...|.+..+..|-..+..++.+||.+..-.- +.|.||
T Consensus       481 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~  529 (618)
T PF01347_consen  481 RCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPY  529 (618)
T ss_dssp             SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhH
Confidence             12345666666666666677788889999999999875333 445554

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=88.60  E-value=9.1  Score=53.14  Aligned_cols=265  Identities=11%  Similarity=0.094  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHHHhcC---CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhh
Q 002658           41 MKQKILTSLSKLADRDTHQIAIEDLEKTIQTL---SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTH  117 (896)
Q Consensus        41 Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L---~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~  117 (896)
                      +.+.+...+.-. |-++..+|...+-.++...   .++.+..-..++.+-..+..-.-|-+|+.+++..+.-.+....|+
T Consensus        94 ~~n~l~~l~~~~-~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~  172 (2341)
T KOG0891|consen   94 LANYLRYLLPSN-DVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPY  172 (2341)
T ss_pred             HHHHHHHhhccC-ChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHH
Confidence            334444333333 6777777777776666432   122222223344333333344556779999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHH-H-----HHHHHHHH
Q 002658          118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQ-S-----GAAMCMAK  191 (896)
Q Consensus       118 LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ-~-----gAasALAk  191 (896)
                      +++++..|...+.|+++.+|..||.++......+.+.+       ....+..+..+...-+.... .     ++...+..
T Consensus       173 ~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~-------~~~~~~~~~rcvd~~~~~l~~~~~~~~~~~~~~~e  245 (2341)
T KOG0891|consen  173 VNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQRE-------AKLKPQWYQRCVDEARHGLSSDGVKIHASLLVYNE  245 (2341)
T ss_pred             HHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhcc-------chhhhHHHHHHHHhccccccchHHHhhhHHHHHHH
Confidence            99999999999999999999999999998887774322       11122333333322111111 1     11111111


Q ss_pred             HHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccC-cccHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002658          192 MVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIA-PQSLEPLLQSIHECLGSTDWATRKAAADA  269 (896)
Q Consensus       192 IIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg-a~~-~pyle~lLp~L~e~LsddDW~lRKaA~Ea  269 (896)
                      ++... +.....++..+-+..+.-......+...+..-+.-++... ..| .-|+...|..++.++...+    -.+...
T Consensus       246 ~~~~~-~~~~~~~~~~~~~~~~~~~lk~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~----~~~~~~  320 (2341)
T KOG0891|consen  246 LLRIS-DPFLEKYDSTCVRQAKGKLLKSIVIRMTLSQILPLLAAFNPAKFQVKYLHTEMDHLLSILRKEK----TRAFVS  320 (2341)
T ss_pred             HHHHH-HHHHHhhHHHHHHHHHHHHhccccHHHHHHhccHHHhhhhhhhhHHHHHHHHHHHHHHhhhccc----hhHHHH
Confidence            11111 1111112223322222222111112212111222222211 111 3677777777777766433    678889


Q ss_pred             HHHHHHhcchHHHhhHHHHHHHHHh-hhcC-CChhhHHHHHHHHHHHHHhc
Q 002658          270 LSALALHSSNLVIDGATSTLTVLEA-CRFD-KIKPVRDSMNEALQLWKKIA  318 (896)
Q Consensus       270 LgsLA~avGe~L~Py~~~~I~~LE~-~RfD-KvKpVRDaA~eALe~WK~la  318 (896)
                      |+.||.+++..+.||...+...+.. .+.+ ....-|+.....|..|...+
T Consensus       321 i~~ia~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a  371 (2341)
T KOG0891|consen  321 IGEIAVALGSSMSPYLSNILDHIRQTLPTKDLARKKFEKSVFTCIGLLASA  371 (2341)
T ss_pred             HHHHHHHhhhhhhhhhcchhhhhhhcchhhhHHHHhcchhHHHHHHHHhhc
Confidence            9999999999999998775544431 1111 11112355556666666554

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=88.42  E-value=56  Score=38.65  Aligned_cols=217  Identities=12%  Similarity=0.142  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCC-ChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCC-h
Q 002658           57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDP-KPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD-S  134 (896)
Q Consensus        57 T~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~-k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpD-s  134 (896)
                      .|--|+++|...+..++.+.++.+-.+..+-.... ...+|++++.+|..++++.......-=    ..+.+.+.++. +
T Consensus         6 ~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R----~~fF~~I~~~~~~   81 (464)
T PF11864_consen    6 ERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR----AEFFRDISDPSND   81 (464)
T ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH----HHHHHHHhcCCCc
Confidence            34567777777777777666777666666555433 355999999999999998876433222    22333334331 2


Q ss_pred             HHHHHHHHHHHHHHHHHhcc-cc-cCCchhHhhhHHHHHHHHhc-------------CCH---hHHHHHHHHHHHHHHh-
Q 002658          135 GMKEACRDSIGSLSKLYLNG-KE-ENNGTVVGLFVKPLFEAMME-------------QNK---GVQSGAAMCMAKMVEC-  195 (896)
Q Consensus       135 ~VR~Ac~~aLG~LA~~li~~-~~-e~~~~~~~~lL~pL~eaL~E-------------qnk---~VQ~gAasALAkIIE~-  195 (896)
                      ..=..-.+++..|..+.-+- ++ .+....+...+.+++++...             .+.   ....+.+.-|=.++-+ 
T Consensus        82 ~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nv  161 (464)
T PF11864_consen   82 DDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNV  161 (464)
T ss_pred             hhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHH
Confidence            22234445555555554221 11 11222333344444422210             000   0122223333333333 


Q ss_pred             c----CCCCchhHHHHHHHHHHHhcCCchh-hHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002658          196 A----SDPPVVAFQKLCARICKLLSNQNFM-AKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADAL  270 (896)
Q Consensus       196 a----~d~~~~yL~~LlPRL~kLLks~s~k-aK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaL  270 (896)
                      .    .....+.+..|+.+++.+-+..+.. .=.++|.++.+++.-|..=...+..++..|.......  .+.+.+-+++
T Consensus       162 iKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m  239 (464)
T PF11864_consen  162 IKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTM  239 (464)
T ss_pred             HhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHH
Confidence            2    2233467888888888884433222 1146788888887666444667778888887775444  5666777788


Q ss_pred             HHHHH-hcch
Q 002658          271 SALAL-HSSN  279 (896)
Q Consensus       271 gsLA~-avGe  279 (896)
                      ..|+. +.|.
T Consensus       240 ~nL~~S~~g~  249 (464)
T PF11864_consen  240 RNLLKSHLGH  249 (464)
T ss_pred             HHHHcCccHH
Confidence            88774 3343

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=88.14  E-value=30  Score=39.62  Aligned_cols=178  Identities=12%  Similarity=0.129  Sum_probs=103.5

Q ss_pred             hhhHHH---HHHHHHHHHHH-hcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchh----Hh
Q 002658           93 PAVKKE---SVRLLALVCEL-HSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTV----VG  164 (896)
Q Consensus        93 ~~vRKe---AIllLG~IAeg-~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~----~~  164 (896)
                      ...|+-   |+.+|..+-.. .+-.+   .|.++|.+.++|..+|..|..-+|..+|+|.+.+-..   ...++    -.
T Consensus        54 enhrekttlcVscLERLfkakegahl---apnlmpdLQrGLiaddasVKiLackqigcilEdcDtn---aVseillvvNa  127 (524)
T KOG4413|consen   54 ENHREKTTLCVSCLERLFKAKEGAHL---APNLMPDLQRGLIADDASVKILACKQIGCILEDCDTN---AVSEILLVVNA  127 (524)
T ss_pred             ccccchhhhHHHHHHHHHhhccchhh---chhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchh---hHHHHHHHhhh
Confidence            345666   44444444332 22234   4556999999999999999999999999999988211   11111    34


Q ss_pred             hhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh---cCCC-CchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC
Q 002658          165 LFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC---ASDP-PVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIA  240 (896)
Q Consensus       165 ~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~---a~d~-~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~  240 (896)
                      .+++.++.+++..+-.|-.+|.-.+..+--.   +.-. ..+.++.+--|-+.+--  +.-+|.-.|.+|--++.+....
T Consensus       128 eilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakc--ndiaRvRVleLIieifSiSpes  205 (524)
T KOG4413|consen  128 EILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKC--NDIARVRVLELIIEIFSISPES  205 (524)
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhh--hhHHHHHHHHHHHHHHhcCHHH
Confidence            6889999999888888888877766655422   1000 01122222211111111  2223444566666555443111


Q ss_pred             cccHH--HHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcc
Q 002658          241 PQSLE--PLLQSIHECLGS-TDWATRKAAADALSALALHSS  278 (896)
Q Consensus       241 ~pyle--~lLp~L~e~Lsd-dDW~lRKaA~EaLgsLA~avG  278 (896)
                      ..|..  .++..|..-|+- +|.-+|..++|....++....
T Consensus       206 aneckkSGLldlLeaElkGteDtLVianciElvteLaeteH  246 (524)
T KOG4413|consen  206 ANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH  246 (524)
T ss_pred             HhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh
Confidence            11211  244444444554 678889999999998887655

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.02  E-value=52  Score=41.07  Aligned_cols=217  Identities=17%  Similarity=0.176  Sum_probs=132.5

Q ss_pred             CCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHH
Q 002658           90 DPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKP  169 (896)
Q Consensus        90 s~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~p  169 (896)
                      +....+|+.+-++|=.+-+..+|.+.|  ..-..-|+..|.|.+-.|--|+...|-.|+....+..    ..-++..+..
T Consensus       159 ~~~~~vkqkaALclL~L~r~spDl~~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y----k~~~~~avs~  232 (938)
T KOG1077|consen  159 SSMDYVKQKAALCLLRLFRKSPDLVNP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY----KTCLPLAVSR  232 (938)
T ss_pred             cchHHHHHHHHHHHHHHHhcCccccCh--hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH----hhhHHHHHHH
Confidence            344678887777777888888888765  1224556678888887777777766777766652210    0011222222


Q ss_pred             HHHHHhc-------------CCHhHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhcC----Cc---hhhHHH-HH
Q 002658          170 LFEAMME-------------QNKGVQSGAAMCMAKMVECASDPP-VVAFQKLCARICKLLSN----QN---FMAKAS-LL  227 (896)
Q Consensus       170 L~eaL~E-------------qnk~VQ~gAasALAkIIE~a~d~~-~~yL~~LlPRL~kLLks----~s---~kaK~a-lL  227 (896)
                      |......             ++|=.|.-.+..|... .-..|.. ..-|..++.+++...+.    .+   .-++.+ +.
T Consensus       233 L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLF  311 (938)
T KOG1077|consen  233 LSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLF  311 (938)
T ss_pred             HHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-CCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHH
Confidence            2222211             3566676666665544 1111111 12344445555444442    12   224443 44


Q ss_pred             HHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHhhHHHHHHHHHhhhcCCChhhHH
Q 002658          228 PVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS--NLVIDGATSTLTVLEACRFDKIKPVRD  305 (896)
Q Consensus       228 ~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avG--e~L~Py~~~~I~~LE~~RfDKvKpVRD  305 (896)
                      ++|.-++.. +..+..+...+..|.++|++.+..+|=-|+|.+..|+....  +.+.-|.+.+|..|.   -+++-.||.
T Consensus       312 eaI~l~~h~-D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLk---terDvSirr  387 (938)
T KOG1077|consen  312 EAISLAIHL-DSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLK---TERDVSIRR  387 (938)
T ss_pred             HHHHHHHHc-CCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhc---cccchHHHH
Confidence            555544432 34566778889999999999999999999999999999866  777777666666654   466666665


Q ss_pred             HHHHHHHHHHHhccC
Q 002658          306 SMNEALQLWKKIAGK  320 (896)
Q Consensus       306 aA~eALe~WK~la~~  320 (896)
                         +|+++.=.++++
T Consensus       388 ---ravDLLY~mcD~  399 (938)
T KOG1077|consen  388 ---RAVDLLYAMCDV  399 (938)
T ss_pred             ---HHHHHHHHHhch
Confidence               488888888866

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=87.93  E-value=49  Score=37.62  Aligned_cols=80  Identities=14%  Similarity=0.251  Sum_probs=54.3

Q ss_pred             cchhhHHHHHHHHHHhh------cCCCh----HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCH--h
Q 002658          113 LTSTHVTKIISHIVKRL------KDSDS----GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNK--G  180 (896)
Q Consensus       113 ~I~P~LpkIL~~IlrrL------kDpDs----~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk--~  180 (896)
                      ++.||+.++||.|+.+|      .+|+-    .+|+.|++.++-.........    ...-|.+...|+.+..+.++  .
T Consensus       270 FvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Y----ktLkPRvtrTllKafLD~~k~~s  345 (450)
T COG5095         270 FVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSY----KTLKPRVTRTLLKAFLDREKTES  345 (450)
T ss_pred             eecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhh----hhhchHHHHHHHHHHHhcccccc
Confidence            36899999999988775      23443    478888887777666662210    12245566667777765544  5


Q ss_pred             HHHHHHHHHHHHHHhc
Q 002658          181 VQSGAAMCMAKMVECA  196 (896)
Q Consensus       181 VQ~gAasALAkIIE~a  196 (896)
                      .|.||.-||..+-...
T Consensus       346 T~YGalkgls~l~ke~  361 (450)
T COG5095         346 TQYGALKGLSILSKEV  361 (450)
T ss_pred             hhhhhhhhhhhhchhh
Confidence            8999999998877543

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.88  E-value=3.3  Score=50.76  Aligned_cols=151  Identities=15%  Similarity=0.136  Sum_probs=101.2

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc--cCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC-C
Q 002658          123 SHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE--ENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD-P  199 (896)
Q Consensus       123 ~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~--e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~a~d-~  199 (896)
                      |+|.|+|+-+++.||.-|+..+-.+-... +|..  ++.+..+..=..-|+..|.++.+.|...|..-+.+++-.-=. .
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~-dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i  255 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIR-DPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI  255 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCC-CCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            67888999999999998887665444333 2211  111122333334555666788888887766666666643211 2


Q ss_pred             CchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 002658          200 PVVAFQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALAL  275 (896)
Q Consensus       200 ~~~yL~~LlPRL~kLLks~-s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~  275 (896)
                      +...+-+|+-+++.=+.+. ...+|.+...+|.-++.. ....+.++.++|.|-..|.|..-.+|-|+.|+|..|-.
T Consensus       256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n-p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~  331 (1005)
T KOG1949|consen  256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN-PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA  331 (1005)
T ss_pred             CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC-ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence            2235667777777666543 446777777777776532 45678899999999999999999999999999877643

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=87.84  E-value=4.2  Score=50.18  Aligned_cols=189  Identities=14%  Similarity=0.111  Sum_probs=125.3

Q ss_pred             CCChhhHHHHHHHHHHHHHHhccc--chh--------hHHHH-------------------HHHHHHhhcCCChHHHHHH
Q 002658           90 DPKPAVKKESVRLLALVCELHSEL--TST--------HVTKI-------------------ISHIVKRLKDSDSGMKEAC  140 (896)
Q Consensus        90 s~k~~vRKeAIllLG~IAeg~~d~--I~P--------~LpkI-------------------L~~IlrrLkDpDs~VR~Ac  140 (896)
                      .++.-.-++|+.++|.+.-|+...  +..        +-++|                   -+.|...+.|.||.+|..-
T Consensus       460 ~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~G  539 (929)
T KOG2062|consen  460 NDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGG  539 (929)
T ss_pred             ccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhh
Confidence            444555677777777777666532  221        12222                   2456777888999999776


Q ss_pred             HHHHHHHHHHHhcccccCCchhHhhhHHHHHHH-HhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhc-CC
Q 002658          141 RDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEA-MMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS-NQ  218 (896)
Q Consensus       141 ~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~ea-L~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLk-s~  218 (896)
                      ..+++ + .++   +. +    -...++.|+-. +.+.|-.|.-+|..||.-+|-..+        ..||+.+.+|. +-
T Consensus       540 m~t~a-l-Ay~---GT-g----nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp--------~~~~s~V~lLses~  601 (929)
T KOG2062|consen  540 MYTLA-L-AYV---GT-G----NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP--------EQLPSTVSLLSESY  601 (929)
T ss_pred             HHHHH-H-HHh---cc-C----chhhHHHhhcccccccchHHHHHHHHHheeeEecCh--------hhchHHHHHHhhhc
Confidence            65544 2 222   11 1    12344444444 578999999999999988875433        36788888885 45


Q ss_pred             chhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcC
Q 002658          219 NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFD  298 (896)
Q Consensus       219 s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~RfD  298 (896)
                      ++.+|..+--++|-. .+|.    .....+..|-....|..--+|..||=+++-|..-.-+.+-|-...+.+-++..-.|
T Consensus       602 N~HVRyGaA~ALGIa-CAGt----G~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~d  676 (929)
T KOG2062|consen  602 NPHVRYGAAMALGIA-CAGT----GLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIND  676 (929)
T ss_pred             ChhhhhhHHHHHhhh-hcCC----CcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhh
Confidence            778887655566643 2231    12244444444556666779999999999999888888888888888888888889


Q ss_pred             CCh
Q 002658          299 KIK  301 (896)
Q Consensus       299 KvK  301 (896)
                      |.+
T Consensus       677 KhE  679 (929)
T KOG2062|consen  677 KHE  679 (929)
T ss_pred             hhh
Confidence            888

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=87.78  E-value=3.1  Score=38.78  Aligned_cols=73  Identities=21%  Similarity=0.251  Sum_probs=59.0

Q ss_pred             HHHHHHHcCCChh--HHHHHHHHHHHHHhcCC-C-CCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchh
Q 002658           44 KILTSLSKLADRD--THQIAIEDLEKTIQTLS-Q-ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST  116 (896)
Q Consensus        44 rll~~L~KLsDRD--T~k~Aa~eLD~La~~L~-p-d~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P  116 (896)
                      .+-.++..+.|..  .|..|+..|.+++..-+ + ..++.++..+.....++++++-=.||..|..++..+++.+.|
T Consensus         4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~   80 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLP   80 (92)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHH
Confidence            3445666776655  89999999999998644 2 238888998899999999999999999999999999876544

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=87.40  E-value=21  Score=50.79  Aligned_cols=254  Identities=15%  Similarity=0.118  Sum_probs=150.4

Q ss_pred             CChhHHHHHHHHHHHHHhc----CC-CCC------HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhccc-chhhHHH
Q 002658           53 ADRDTHQIAIEDLEKTIQT----LS-QES------LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-TSTHVTK  120 (896)
Q Consensus        53 sDRDT~k~Aa~eLD~La~~----L~-pd~------Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~-I~P~Lpk  120 (896)
                      .+......+...|..+-..    |+ ++.      +..|++-++..-.++.|+.|..++..++.+.+.-... +..+...
T Consensus       996 ~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d 1075 (3550)
T KOG0889|consen  996 ENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDFQVD 1075 (3550)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHHHHHH
Confidence            4566778888877776643    33 222      3444444444446778999999999999998877733 6778888


Q ss_pred             HHHHHHHhhcCCChHHHH----HHHHHHHHHHHHHhcc-cc-cCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002658          121 IISHIVKRLKDSDSGMKE----ACRDSIGSLSKLYLNG-KE-ENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE  194 (896)
Q Consensus       121 IL~~IlrrLkDpDs~VR~----Ac~~aLG~LA~~li~~-~~-e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE  194 (896)
                      ++..+.-.|+|-...+-.    .|-+.+-.+...+... .. +........++.++..-|..+|..|-+.+..+|..+-|
T Consensus      1076 ~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~ 1155 (3550)
T KOG0889|consen 1076 ILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISE 1155 (3550)
T ss_pred             HhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            889899999987654433    3333343333333221 11 11124567788888888889999999999999999999


Q ss_pred             hcCCCCc----hhHHHH-HHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHH---HHHHHhhCCC--------
Q 002658          195 CASDPPV----VAFQKL-CARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLL---QSIHECLGST--------  258 (896)
Q Consensus       195 ~a~d~~~----~yL~~L-lPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lL---p~L~e~Lsdd--------  258 (896)
                      .......    ++-+.| .|.+.+.|.+..+.+.-..++++.=.+..+..+-.+.+.+.   ..+...+..+        
T Consensus      1156 ~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~ 1235 (3550)
T KOG0889|consen 1156 LSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIALADAEEDELATIQ 1235 (3550)
T ss_pred             HcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence            8743322    122222 34444444443444444455555444444422222222222   2222222211        


Q ss_pred             ----------CHHHHHHHHHHHHHHHHhcc---hHHHhhHHHHHHHHHhhhcCCChhhHHH
Q 002658          259 ----------DWATRKAAADALSALALHSS---NLVIDGATSTLTVLEACRFDKIKPVRDS  306 (896)
Q Consensus       259 ----------DW~lRKaA~EaLgsLA~avG---e~L~Py~~~~I~~LE~~RfDKvKpVRDa  306 (896)
                                --.+|-++.++|+.-.....   ....+|...+|.++-...+-+-+..-++
T Consensus      1236 k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~ 1296 (3550)
T KOG0889|consen 1236 KTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEV 1296 (3550)
T ss_pred             cccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHH
Confidence                      12358888888888776666   4577777888777655555555534444

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=86.85  E-value=1.2e+02  Score=40.01  Aligned_cols=193  Identities=13%  Similarity=0.131  Sum_probs=128.1

Q ss_pred             hhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCC-CCCHHHHHHHHhhhcCC-CChhhHHHHHHHHHHHHHHhc
Q 002658           34 SHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLS-QESLPMLLNCLYESSND-PKPAVKKESVRLLALVCELHS  111 (896)
Q Consensus        34 ~~~~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~-pd~Lp~fLs~L~es~ss-~k~~vRKeAIllLG~IAeg~~  111 (896)
                      .+--+.....+++++|..+. . .....++.+..+...++ ...+..++.-|...... .+...-+.-...|..+++.-+
T Consensus       230 ~~~~~~t~~~rilq~l~~fe-h-l~~~~ad~v~l~~sky~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P  307 (1251)
T KOG0414|consen  230 RYNQCSTFASRILQNLRYFE-H-LAVHVADAVTLVRSKYGSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVP  307 (1251)
T ss_pred             HhhhhhHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHhcccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhH
Confidence            33344556667777777764 2 22334445555555442 22345555555433322 245566677778888888888


Q ss_pred             ccchhhHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhcccc-c-CCchhHhhhHHHHHHHHhcCCHhHHHHHHHH
Q 002658          112 ELTSTHVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKE-E-NNGTVVGLFVKPLFEAMMEQNKGVQSGAAMC  188 (896)
Q Consensus       112 d~I~P~LpkIL~~IlrrLkDpDs-~VR~Ac~~aLG~LA~~li~~~~-e-~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasA  188 (896)
                      ..+.++|..++.     |-|..+ .+|.+...++|.++...+.... + ...+.-.+++..|.+.+.+-++.|-.-+..-
T Consensus       308 ~l~~~~l~~lv~-----lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv  382 (1251)
T KOG0414|consen  308 KLMLRQLTLLVD-----LLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQV  382 (1251)
T ss_pred             HHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence            888888877777     556554 7899999999999888876311 1 1223344588888888888999999999999


Q ss_pred             HHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 002658          189 MAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS  234 (896)
Q Consensus       189 LAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA  234 (896)
                      +.++|+.- -.+......++.-.+.-|.+.+.-+|-.++..+.++-
T Consensus       383 ~~~l~~~~-s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L  427 (1251)
T KOG0414|consen  383 FRRLFQQH-SIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLL  427 (1251)
T ss_pred             HHHHHHcc-CCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence            99999852 2233456677777777777777888887787777763

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=86.43  E-value=5.1  Score=48.22  Aligned_cols=154  Identities=18%  Similarity=0.149  Sum_probs=109.6

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHH-HhcCCHhHHHHHHHHHHHHHHhcCCCCch
Q 002658          124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEA-MMEQNKGVQSGAAMCMAKMVECASDPPVV  202 (896)
Q Consensus       124 ~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~ea-L~Eqnk~VQ~gAasALAkIIE~a~d~~~~  202 (896)
                      .|...|.|.|+.+|..-+.+++ ++...+  +       -..++..|+.. +.+.|..|.-+|..||.-+|=..++    
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~a-lAy~GT--g-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~----  585 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLA-LAYVGT--G-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD----  585 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHH-HHHhcC--C-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc----
Confidence            5667789999999988877765 222221  1       12244555554 5788999999999999888753333    


Q ss_pred             hHHHHHHHHHHHhc-CCchhhHHHHHHHHHHH-HhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchH
Q 002658          203 AFQKLCARICKLLS-NQNFMAKASLLPVVGSL-SQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNL  280 (896)
Q Consensus       203 yL~~LlPRL~kLLk-s~s~kaK~alL~aIgSL-A~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~  280 (896)
                          ++++.+++|. +-++.+|...--++|-. +..|      ....+..|-....|..--+|.+||=+++-|..-.-+.
T Consensus       586 ----~lv~tvelLs~shN~hVR~g~AvaLGiacag~G------~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~  655 (926)
T COG5116         586 ----LLVGTVELLSESHNFHVRAGVAVALGIACAGTG------DKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE  655 (926)
T ss_pred             ----hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc------cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc
Confidence                6677777775 45788887665566643 2222      2233444444456677789999999999999998899


Q ss_pred             HHhhHHHHHHHHHhhhcCCCh
Q 002658          281 VIDGATSTLTVLEACRFDKIK  301 (896)
Q Consensus       281 L~Py~~~~I~~LE~~RfDKvK  301 (896)
                      +-|-..+|++-++..-.||.+
T Consensus       656 Lnp~v~~I~k~f~~vI~~Khe  676 (926)
T COG5116         656 LNPNVKRIIKKFNRVIVDKHE  676 (926)
T ss_pred             cChhHHHHHHHHHHHHhhhhH
Confidence            999999999999988889887

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=86.30  E-value=69  Score=36.83  Aligned_cols=254  Identities=14%  Similarity=0.142  Sum_probs=147.2

Q ss_pred             CChhHHHHHHHHHHHHHhcCC---C-----CCHHHHHHHHhhhcCC-------CChhhHHHHHHHHHHHHHHhc--ccc-
Q 002658           53 ADRDTHQIAIEDLEKTIQTLS---Q-----ESLPMLLNCLYESSND-------PKPAVKKESVRLLALVCELHS--ELT-  114 (896)
Q Consensus        53 sDRDT~k~Aa~eLD~La~~L~---p-----d~Lp~fLs~L~es~ss-------~k~~vRKeAIllLG~IAeg~~--d~I-  114 (896)
                      +||+.+-=|...|-.+....+   .     +.++.|+.++.....+       .+...-.+|+++||.+..-..  ..+ 
T Consensus         5 ~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~   84 (372)
T PF12231_consen    5 SDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLS   84 (372)
T ss_pred             CCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCC
Confidence            466666666666665554332   1     1266667776654432       356667789999998875221  122 


Q ss_pred             hhhHHHHHHHHHHhhcCCCh--HHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhc--CCHhHHHHHHHHHH
Q 002658          115 STHVTKIISHIVKRLKDSDS--GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME--QNKGVQSGAAMCMA  190 (896)
Q Consensus       115 ~P~LpkIL~~IlrrLkDpDs--~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~E--qnk~VQ~gAasALA  190 (896)
                      ..+...++-+.+..|.++..  .+-..+.++|.   .+=+.+..  ........+-..+..+.+  +...+..-+..++.
T Consensus        85 ~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls---~Q~f~~~~--~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~  159 (372)
T PF12231_consen   85 DDFASFIIDHSIESLQNPNSPKSICTHYLWCLS---DQKFSPKI--MTSDRVERLLAALHNIKNRFPSKSIISERLNIYK  159 (372)
T ss_pred             hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---cCCCCCcc--cchhhHHHHHHHHHHhhccCCchhHHHHHHHHHH
Confidence            34455688889999988763  34444444433   22111110  011122222233333333  57788888999999


Q ss_pred             HHHHhcCCCCchh----HHHHHHHHHHHhcCCchhhHHHHHHHHHHHH--------h-ccccC------cccHHHHHHHH
Q 002658          191 KMVECASDPPVVA----FQKLCARICKLLSNQNFMAKASLLPVVGSLS--------Q-VGAIA------PQSLEPLLQSI  251 (896)
Q Consensus       191 kIIE~a~d~~~~y----L~~LlPRL~kLLks~s~kaK~alL~aIgSLA--------~-vga~~------~pyle~lLp~L  251 (896)
                      ++++..+......    ++.|++.++-..+  ..+.++..+.......        . +...+      ..|++.+...|
T Consensus       160 ~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k--~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L  237 (372)
T PF12231_consen  160 RLLSQFPQQMIKHADIWFPILFPDLLSSAK--DIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERL  237 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHH
Confidence            9999887766543    5555555553222  2333322222111111        0 00111      13566677777


Q ss_pred             HHhhCC-CCHHHHHHHHHHHHHHHHhcchH-H--HhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhcc
Q 002658          252 HECLGS-TDWATRKAAADALSALALHSSNL-V--IDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAG  319 (896)
Q Consensus       252 ~e~Lsd-dDW~lRKaA~EaLgsLA~avGe~-L--~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la~  319 (896)
                      .+.+.+ ++   =+.|.++-+.+...+|.. +  -+|....+.+.+.|=...+..+|-.   |+..|+.+-.
T Consensus       238 ~~mi~~~~~---~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~---A~~aW~~liy  303 (372)
T PF12231_consen  238 KEMIKSKDE---YKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQ---AFKAWRRLIY  303 (372)
T ss_pred             HHHHhCcCC---cchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHH---HHHHHHHHHH
Confidence            777776 33   245777878777777833 2  3678899999999999999988865   9999999985

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=86.17  E-value=9.1  Score=46.22  Aligned_cols=114  Identities=13%  Similarity=0.217  Sum_probs=79.3

Q ss_pred             cCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHhhh
Q 002658           88 SNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLF  166 (896)
Q Consensus        88 ~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkD-pDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~l  166 (896)
                      .++-+--||++|+.+||.+|=--.+.        ++-++..|.+ .++.||...+-++|..+..-   +        ...
T Consensus       561 vsD~nDDVrRAAViAlGfvc~~D~~~--------lv~tvelLs~shN~hVR~g~AvaLGiacag~---G--------~~~  621 (926)
T COG5116         561 VSDGNDDVRRAAVIALGFVCCDDRDL--------LVGTVELLSESHNFHVRAGVAVALGIACAGT---G--------DKV  621 (926)
T ss_pred             cccCchHHHHHHHHheeeeEecCcch--------hhHHHHHhhhccchhhhhhhHHHhhhhhcCC---c--------cHH
Confidence            35566789999999999986332222        3345555655 47899999999999766544   2        123


Q ss_pred             HHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCch
Q 002658          167 VKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNF  220 (896)
Q Consensus       167 L~pL~eaL-~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~  220 (896)
                      .--+++.| -+.+.-|..+||.|++.+.=...+...+-+..+.-+|..++.+.|-
T Consensus       622 a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe  676 (926)
T COG5116         622 ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE  676 (926)
T ss_pred             HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence            33445555 5778889999999999998766666566666777777777766543

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=85.80  E-value=6.1  Score=40.20  Aligned_cols=145  Identities=9%  Similarity=0.114  Sum_probs=85.0

Q ss_pred             HHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH--h
Q 002658          119 TKIISHIVKRLKDS-DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE--C  195 (896)
Q Consensus       119 pkIL~~IlrrLkDp-Ds~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE--~  195 (896)
                      |.++..+++-|+-. ...+|..|..++|.|..-  +|.          ..+-......+..  .+.....+-....-  +
T Consensus         9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL--DP~----------~~k~~~~~~~~~~--~~~~~~~~~~~~l~~~~   74 (160)
T PF11865_consen    9 PELLDILLNILKTEQSQSIRREALRVLGILGAL--DPY----------KHKSIQKSLDSKS--SENSNDESTDISLPMMG   74 (160)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc--CcH----------HHhcccccCCccc--cccccccchhhHHhhcc
Confidence            66788888887765 479999999999976431  210          0000000000000  01111111111111  1


Q ss_pred             cCCCCchh-HHHHHHHHHHHhcCCchhh-HHHHHHHHHHHHh-ccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002658          196 ASDPPVVA-FQKLCARICKLLSNQNFMA-KASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSA  272 (896)
Q Consensus       196 a~d~~~~y-L~~LlPRL~kLLks~s~ka-K~alL~aIgSLA~-vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgs  272 (896)
                      ......+| ....+..|.++|++++..- ..+++.+|-.++. .|....+|++.++|.++..+...+..+|.....-|+.
T Consensus        75 ~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~  154 (160)
T PF11865_consen   75 ISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLAD  154 (160)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            11112244 4457788888998874432 2367777777764 4544599999999999999886555888888888887


Q ss_pred             HHHhc
Q 002658          273 LALHS  277 (896)
Q Consensus       273 LA~av  277 (896)
                      |...+
T Consensus       155 lv~iv  159 (160)
T PF11865_consen  155 LVSIV  159 (160)
T ss_pred             HHHHh
Confidence            76654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=85.36  E-value=24  Score=38.88  Aligned_cols=147  Identities=16%  Similarity=0.156  Sum_probs=103.2

Q ss_pred             HHHHhcCCHhHHHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHH
Q 002658          171 FEAMMEQNKGVQSGAAMCMAKMVECASDP--PVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLL  248 (896)
Q Consensus       171 ~eaL~Eqnk~VQ~gAasALAkIIE~a~d~--~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vga~~~pyle~lL  248 (896)
                      =+.|.+.+..+.+.|..+|+.+++..+..  ...-+..|+.-++.-|.+... +..+ +.++.+++............++
T Consensus         5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~-~~~~-l~gl~~L~~~~~~~~~~~~~i~   82 (262)
T PF14500_consen    5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHAC-VQPA-LKGLLALVKMKNFSPESAVKIL   82 (262)
T ss_pred             hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhh-HHHH-HHHHHHHHhCcCCChhhHHHHH
Confidence            34566778889999999999999997532  234566677777776754322 3444 7888888754444455566777


Q ss_pred             HHHHHhhCC--CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH-HHHhhhcCCChhhHHHHHHHHHHHHHhccCCC
Q 002658          249 QSIHECLGS--TDWATRKAAADALSALALHSSNLVIDGATSTLT-VLEACRFDKIKPVRDSMNEALQLWKKIAGKVD  322 (896)
Q Consensus       249 p~L~e~Lsd--dDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~-~LE~~RfDKvKpVRDaA~eALe~WK~la~~~d  322 (896)
                      ..+++....  --...|..+.+.|..+.....+.+...-...+. +++.+...|++   .-...++++++.+...++
T Consensus        83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDP---RnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDP---RNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCH---HHHHHHHHHHHHHHHhcc
Confidence            777764332  346789999999999999887777655455554 55677778888   667788999998886665

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=85.28  E-value=1.7e+02  Score=40.53  Aligned_cols=225  Identities=12%  Similarity=0.068  Sum_probs=132.1

Q ss_pred             CCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHH
Q 002658           90 DPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKP  169 (896)
Q Consensus        90 s~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~p  169 (896)
                      +....+|+-.+.++..+...+++.|..=+.-|+..+-....|+...+=..+-+++..+....+.....-....+..++..
T Consensus      1194 s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~c 1273 (1780)
T PLN03076       1194 SNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNC 1273 (1780)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHH
Confidence            45678999999999999999999998899999999998899998877777888888777664331100001234444444


Q ss_pred             HHHHHh-cCCHhHHHHHHHHHHH----HHHhc-----C------------------CC-----C----chhHHHHHHHHH
Q 002658          170 LFEAMM-EQNKGVQSGAAMCMAK----MVECA-----S------------------DP-----P----VVAFQKLCARIC  212 (896)
Q Consensus       170 L~eaL~-Eqnk~VQ~gAasALAk----IIE~a-----~------------------d~-----~----~~yL~~LlPRL~  212 (896)
                      |.+... ..+.++-..|..-|..    +.+..     .                  ..     .    ..+-=.|+-.|.
T Consensus      1274 L~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls 1353 (1780)
T PLN03076       1274 LIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLS 1353 (1780)
T ss_pred             HHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHH
Confidence            443332 1122222223332332    22110     0                  00     0    012224666676


Q ss_pred             HHhcCCchhhHHHHHHHHHHHH-hccccCcc-----cHHHHHHHHHHhhCC------------------------CCHHH
Q 002658          213 KLLSNQNFMAKASLLPVVGSLS-QVGAIAPQ-----SLEPLLQSIHECLGS------------------------TDWAT  262 (896)
Q Consensus       213 kLLks~s~kaK~alL~aIgSLA-~vga~~~p-----yle~lLp~L~e~Lsd------------------------dDW~l  262 (896)
                      .+..+....+|..+|..+-.+. .-|..|.+     .+..+|.+|++.+..                        ..|- 
T Consensus      1354 ~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl- 1432 (1780)
T PLN03076       1354 ELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL- 1432 (1780)
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHH-
Confidence            7777777788888777765554 34555654     345566666665421                        1242 


Q ss_pred             HHHHHHHHHHHHHhcc---hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658          263 RKAAADALSALALHSS---NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA  318 (896)
Q Consensus       263 RKaA~EaLgsLA~avG---e~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la  318 (896)
                      .-....+|..|.....   +.+.+.++.++..|..|-....+   ..|.-.+...+.+-
T Consensus      1433 ~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~---~la~ig~~~l~~li 1488 (1780)
T PLN03076       1433 YETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQ---SLAGIGIAAFVRLM 1488 (1780)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH---HHHHHHHHHHHHHH
Confidence            2333344444444444   56666788889999999888777   34444444444444

>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised

Probab=85.26  E-value=1.4  Score=41.19  Aligned_cols=55  Identities=5%  Similarity=0.184  Sum_probs=43.2

Q ss_pred             hhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 002658           94 AVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSK  149 (896)
Q Consensus        94 ~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~  149 (896)
                      ..|-.+++.|++++..++-.+.++||+|+..+.+...| ...|+.++-.+++.+=+
T Consensus         4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkr   58 (90)
T PF11919_consen    4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKR   58 (90)
T ss_dssp             HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHH
Confidence            35778999999999999999999999999999999998 55788888888876654

This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=85.07  E-value=5.9  Score=43.84  Aligned_cols=63  Identities=19%  Similarity=0.449  Sum_probs=48.3

Q ss_pred             CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 002658           74 QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLS  148 (896)
Q Consensus        74 pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA  148 (896)
                      |..++.+...|.+.  ...+.||-+|..+||.++.          +.-+..|.+-++|+++.||.-|.-++-.+-
T Consensus       217 ~~ai~~L~k~L~d~--~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  217 PAAIPSLIKVLLDE--TEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             hhhhHHHHHHHHhh--hcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            43465555555543  3568999999999999987          566788889999999999999988776543

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=84.93  E-value=28  Score=43.35  Aligned_cols=261  Identities=12%  Similarity=0.095  Sum_probs=138.4

Q ss_pred             hHHHHHHHHHHHHHcC-CChhHHHHHHHHHHHHHhcCCCCCHHHHHH-HHhhhcCCCChhhHHHHHHHHHHHHHHhcccc
Q 002658           37 AMVEMKQKILTSLSKL-ADRDTHQIAIEDLEKTIQTLSQESLPMLLN-CLYESSNDPKPAVKKESVRLLALVCELHSELT  114 (896)
Q Consensus        37 ~~~~Lk~rll~~L~KL-sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs-~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I  114 (896)
                      .-.++-.++-.||..+ +..+-.+.++.+++-++.     .|..++. ++....-+  ...=+.|+..|=++.---..-+
T Consensus       386 ~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLId-----aL~~~iq~~i~~~~~d--~K~VENcvCilRNLSYrl~~Ev  458 (717)
T KOG1048|consen  386 EDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLID-----ALLFSIQTAIQKSDLD--SKSVENCVCILRNLSYRLEAEV  458 (717)
T ss_pred             ccceeeehhhhhhccccchhHHHHHHHhhccchHH-----HHHHHHHHHHHhcccc--chhHHHHHHHHhhcCchhhhhc
Confidence            3344555667788777 445555666666665554     1333333 33322222  2333567777766544333224


Q ss_pred             hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhc----------cccc----CCc-hhHhhhHHHHHHHHh-cCC
Q 002658          115 STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLN----------GKEE----NNG-TVVGLFVKPLFEAMM-EQN  178 (896)
Q Consensus       115 ~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~----------~~~e----~~~-~~~~~lL~pL~eaL~-Eqn  178 (896)
                      .+-..+.+..+-+...-..+.      +.+|.+....-+          +...    +.+ -.++.++++-+..|. ..|
T Consensus       459 p~~~~~~~~~~~~~~~~~~~~------~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n  532 (717)
T KOG1048|consen  459 PPKYRQVLANIARLPGVGPPA------ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKN  532 (717)
T ss_pred             CHhhhhHhhcccccccCCCcc------cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcc
Confidence            443333333332222111111      344433333211          1000    001 235677777677774 568


Q ss_pred             HhHHHHHHHHHHHHHHhcCCCCchhH-------HHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-ccccCcccHHHHHHH
Q 002658          179 KGVQSGAAMCMAKMVECASDPPVVAF-------QKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQS  250 (896)
Q Consensus       179 k~VQ~gAasALAkIIE~a~d~~~~yL-------~~LlPRL~kLLks~s~kaK~alL~aIgSLA~-vga~~~pyle~lLp~  250 (896)
                      ..++++++.||..+.-+... ...|+       ++-+|-|+++|.+++..+..++..+++=++. +- .-.-.....||-
T Consensus       533 ~~TlEasaGaLQNltA~~~~-~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r-nk~ligk~a~~~  610 (717)
T KOG1048|consen  533 DNTLEASAGALQNLTAGLWT-WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR-NKELIGKYAIPD  610 (717)
T ss_pred             hHHHHHhhhhHhhhhccCCc-chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch-hhhhhhcchHHH
Confidence            89999999999999876422 22332       2467899999999887766666666666541 11 001111456777


Q ss_pred             HHHhhCC------CCHHHHHHHHHHHHHHHHhcchHHHhh-----HHHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002658          251 IHECLGS------TDWATRKAAADALSALALHSSNLVIDG-----ATSTLTVLEACRFDKIKPVRDSMNEALQLW  314 (896)
Q Consensus       251 L~e~Lsd------dDW~lRKaA~EaLgsLA~avGe~L~Py-----~~~~I~~LE~~RfDKvKpVRDaA~eALe~W  314 (896)
                      |.++|.+      .+|++=.++|-+|..|...-.+.-..+     ++.++.+...  ++..|.++-+..-.-.+|
T Consensus       611 lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s--~~S~k~~kaAs~vL~~lW  683 (717)
T KOG1048|consen  611 LVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS--QHSPKEFKAASSVLDVLW  683 (717)
T ss_pred             HHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc--cCCHHHHHHHHHHHHHHH
Confidence            8888765      358888888888877764443222222     2233333323  777787775544444444

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=84.76  E-value=20  Score=43.97  Aligned_cols=152  Identities=15%  Similarity=0.118  Sum_probs=105.0

Q ss_pred             hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHh--cccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002658          117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYL--NGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE  194 (896)
Q Consensus       117 ~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li--~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE  194 (896)
                      +-.....+.+..++|  ..++.|+|.++-.+++-+-  +-++     .-..+..||+..|.++.-.|+.++..||..+|=
T Consensus       376 ~~t~~~l~~~~~~kd--~~~~aaa~l~~~s~srsV~aL~tg~-----~~~dv~~plvqll~dp~~~i~~~~lgai~NlVm  448 (678)
T KOG1293|consen  376 TTTESHLMCLPPIKD--HDFVAAALLCLKSFSRSVSALRTGL-----KRNDVAQPLVQLLMDPEIMIMGITLGAICNLVM  448 (678)
T ss_pred             HHHHHHHcccccccc--HHHHHHHHHHHHHHHHHHHHHHcCC-----ccchhHHHHHHHhhCcchhHHHHHHHHHHHHHh
Confidence            333344444455544  4588888887766665542  2222     134577888888899999999999999999885


Q ss_pred             hcCCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHH-hcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002658          195 CASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLS-QVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADAL  270 (896)
Q Consensus       195 ~a~d~~~~yL~-~LlPRL~kLLks~s~kaK~alL~aIgSLA-~vg--a~~~pyle~lLp~L~e~LsddDW~lRKaA~EaL  270 (896)
                      .-.+.-.-+|. ..+.++..++.++.+-.|...+-++.-+. ..-  ..+.++-+..+..|..+..|+||.+-..+.+.|
T Consensus       449 efs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqll  528 (678)
T KOG1293|consen  449 EFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLL  528 (678)
T ss_pred             hcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHH
Confidence            43332223343 36788889999998888888888887764 221  346777788888899999999999987777766


Q ss_pred             HHHHH
Q 002658          271 SALAL  275 (896)
Q Consensus       271 gsLA~  275 (896)
                      -.+..
T Consensus       529 RNl~c  533 (678)
T KOG1293|consen  529 RNLTC  533 (678)
T ss_pred             HHhhc
Confidence            65543

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=84.74  E-value=59  Score=40.18  Aligned_cols=146  Identities=15%  Similarity=0.108  Sum_probs=91.0

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhcC-----CCCC---HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccch
Q 002658           44 KILTSLSKLADRDTHQIAIEDLEKTIQTL-----SQES---LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS  115 (896)
Q Consensus        44 rll~~L~KLsDRDT~k~Aa~eLD~La~~L-----~pd~---Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~  115 (896)
                      .++.++.-+.|-|-.+.|+..|..+....     +++.   ..++++.+    .++...+...++-++-+++=-+++.=.
T Consensus       380 ~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll----~dp~~~i~~~~lgai~NlVmefs~~ks  455 (678)
T KOG1293|consen  380 SHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL----MDPEIMIMGITLGAICNLVMEFSNLKS  455 (678)
T ss_pred             HHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh----hCcchhHHHHHHHHHHHHHhhcccHHH
Confidence            34445566688888888888777666542     1222   55555555    245556655554444444443443322


Q ss_pred             hhHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH-hcCCHhHHHHHHHHHHHHH
Q 002658          116 THVT-KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMV  193 (896)
Q Consensus       116 P~Lp-kIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL-~Eqnk~VQ~gAasALAkII  193 (896)
                      .+|. -.+-.|+.-+.|+++.+|..+.|++..++-.. ++..  .......+-..++..+ .++.+.||++++.-|-.++
T Consensus       456 kfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~-de~~--k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~  532 (678)
T KOG1293|consen  456 KFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC-DEEE--KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT  532 (678)
T ss_pred             HHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc-hHHH--HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence            3332 24567888899999999999999999888666 3211  1122333333444444 7889999999999888887


Q ss_pred             Hhc
Q 002658          194 ECA  196 (896)
Q Consensus       194 E~a  196 (896)
                      -+.
T Consensus       533 c~~  535 (678)
T KOG1293|consen  533 CNS  535 (678)
T ss_pred             cCc
Confidence            654

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=84.57  E-value=37  Score=35.21  Aligned_cols=71  Identities=10%  Similarity=0.199  Sum_probs=55.7

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002658           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY  151 (896)
Q Consensus        77 Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~l  151 (896)
                      +..||..|.+..-+.+..+|..|+.+++.+.+.  ..+-|  ...+|+|+-...||++.||+.|...+..+.+..
T Consensus         6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q--GLvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~   76 (187)
T PF12830_consen    6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQ--GLVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKH   76 (187)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc--CCCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence            456777777776788899999999999998873  33344  345788888999999999999988888777766

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=84.57  E-value=13  Score=45.60  Aligned_cols=117  Identities=18%  Similarity=0.188  Sum_probs=90.9

Q ss_pred             chhhHHHHHH-HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 002658          114 TSTHVTKIIS-HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM  192 (896)
Q Consensus       114 I~P~LpkIL~-~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkI  192 (896)
                      +...+..++. +..++-+|....|-+-...++|++-+.+..+     -..+..+++-||+.|+|....||.-||-.+-++
T Consensus       523 ~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkah-----w~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKI  597 (1053)
T COG5101         523 FVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAH-----WSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKI  597 (1053)
T ss_pred             HHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHH-----HHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHH
Confidence            3444444444 4467899999999888889999999999432     245677889999999999999999999999999


Q ss_pred             HHhcC-------CCC-chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 002658          193 VECAS-------DPP-VVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ  235 (896)
Q Consensus       193 IE~a~-------d~~-~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~  235 (896)
                      ++-++       ... .+++..++..|-+...+-.++-+-..+.|.|-++.
T Consensus       598 vqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIs  648 (1053)
T COG5101         598 VQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMVIS  648 (1053)
T ss_pred             HHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHHHh
Confidence            99872       112 46788888888888787777767778888888764

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=84.31  E-value=1.5  Score=34.16  Aligned_cols=29  Identities=28%  Similarity=0.394  Sum_probs=26.4

Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 002658          121 IISHIVKRLKDSDSGMKEACRDSIGSLSK  149 (896)
Q Consensus       121 IL~~IlrrLkDpDs~VR~Ac~~aLG~LA~  149 (896)
                      .+|.+++.|+++++.|+..|+|+|+.|++
T Consensus        13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen   13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            57889999999999999999999999873

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.05  E-value=47  Score=41.64  Aligned_cols=176  Identities=14%  Similarity=0.166  Sum_probs=118.6

Q ss_pred             hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-ccch
Q 002658           37 AMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTS  115 (896)
Q Consensus        37 ~~~~Lk~rll~~L~KLsDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~-d~I~  115 (896)
                      ++-.--..++.++-|.+|....-+.+..|-.+.. .....|..|.--++..+++++-.+|+-++-+.=-+++.|. +.+.
T Consensus       276 alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~-~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv  354 (948)
T KOG1058|consen  276 ALKAAASTYIDLLVKESDNNVKLIVLDRLSELKA-LHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIV  354 (948)
T ss_pred             HHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh-hhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHH
Confidence            3344456788888999999888888777777663 1222355555455555678888899998877666776665 4455


Q ss_pred             hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002658          116 THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC  195 (896)
Q Consensus       116 P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAkIIE~  195 (896)
                      .+|.+=+---...=.|..-.-|+.-..+|...+-.+.        ++-..+++-|++.|++.|+..-.+...=+-.++|-
T Consensus       355 ~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp--------~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek  426 (948)
T KOG1058|consen  355 QFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP--------EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEK  426 (948)
T ss_pred             HHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh--------HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence            5554443333333234445779999999988887771        45678999999999999988777776667777776


Q ss_pred             cCCCCchhHHHHHHHHHHHhcCCchh
Q 002658          196 ASDPPVVAFQKLCARICKLLSNQNFM  221 (896)
Q Consensus       196 a~d~~~~yL~~LlPRL~kLLks~s~k  221 (896)
                      .+++-...+.+|+.-|-++=....|.
T Consensus       427 ~p~Lr~~ii~~l~~~~~~irS~ki~r  452 (948)
T KOG1058|consen  427 FPNLRASIIEKLLETFPQIRSSKICR  452 (948)
T ss_pred             CchHHHHHHHHHHHhhhhhcccccch
Confidence            66655556777766665554444443

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.95  E-value=98  Score=39.93  Aligned_cols=213  Identities=12%  Similarity=0.136  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccccc-CCchhHhhhHHHHHHHHh--
Q 002658           99 SVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEE-NNGTVVGLFVKPLFEAMM--  175 (896)
Q Consensus        99 AIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~e-~~~~~~~~lL~pL~eaL~--  175 (896)
                      .+..+|.+++.-|+...++|--.+=.++..+.++.+.|++++..++-+++..+--...+ -..+..+-++.-|-..|.  
T Consensus       568 ~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~  647 (1014)
T KOG4524|consen  568 VLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTS  647 (1014)
T ss_pred             hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccC
Confidence            45567888888887777766555556777899999999999999999999887210000 000111112222222221  


Q ss_pred             cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH---h-----------------
Q 002658          176 EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS---Q-----------------  235 (896)
Q Consensus       176 Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA---~-----------------  235 (896)
                      .-.+.    +---|.-++..+.....++|+.++.-+++.+..-|-..-...+..+-+++   +                 
T Consensus       648 ~~s~~----~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~  723 (1014)
T KOG4524|consen  648 GMSPR----VPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYINDEILGHIADQHI  723 (1014)
T ss_pred             CCCch----hHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccchhhHHHHHHHH
Confidence            01111    22234555666655566777777776666665422211111111111110   0                 


Q ss_pred             -------------------------------------c-c------------------c----------cCcccHHHHHH
Q 002658          236 -------------------------------------V-G------------------A----------IAPQSLEPLLQ  249 (896)
Q Consensus       236 -------------------------------------v-g------------------a----------~~~pyle~lLp  249 (896)
                                                           + |                  .          ..++..+.++.
T Consensus       724 ~~~~k~l~e~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~edens~~~d~ep~~~~qv~iv~k  803 (1014)
T KOG4524|consen  724 SQSTKVLNELPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDENSEYTDTEPILPDQVKIVLK  803 (1014)
T ss_pred             HHHHHHhhcchhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCccccccCCCCCCCCCChHHHHHHH
Confidence                                                 0 0                  0          00022222333


Q ss_pred             HH---HHhhCCCCHHHHHHHHHHHHHHH---HhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658          250 SI---HECLGSTDWATRKAAADALSALA---LHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA  318 (896)
Q Consensus       250 ~L---~e~LsddDW~lRKaA~EaLgsLA---~avGe~L~Py~~~~I~~LE~~RfDKvKpVRDaA~eALe~WK~la  318 (896)
                      .|   ..+|++++..+|-.|+++|....   ....+.|.|.+.+.=..+-.|..+|++   =++++|++..-.++
T Consensus       804 Il~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~---L~v~~a~~~i~~m~  875 (1014)
T KOG4524|consen  804 ILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDP---LIVQRAFSCIEQMG  875 (1014)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCch---HHHHHHHHHHHHHH
Confidence            33   34588899999999999988633   333477888877776766677778888   45555666655555

>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein

Probab=82.63  E-value=31  Score=41.90  Aligned_cols=144  Identities=12%  Similarity=0.184  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcC-CCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCChHH
Q 002658           58 HQIAIEDLEKTIQTLSQESLPMLLNCLYESSN-DPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM  136 (896)
Q Consensus        58 ~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~s-s~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpDs~V  136 (896)
                      ...-+.+|-..+..|+.+ ...++..|+...- ..++.++++.+..|++++..++.    |++.++..+++.+..+....
T Consensus        53 l~~~L~~L~~~Vs~Ld~~-~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~----yl~~vl~~LV~~f~p~~~~~  127 (563)
T PF05327_consen   53 LIRWLKALSSCVSLLDSS-CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPK----YLSPVLSMLVKNFIPPPSSI  127 (563)
T ss_dssp             HHHHHHHHHHGGGGG-SC-CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GG----GHHHHHHHHHHGGGS-HHHH
T ss_pred             HHHHHHHHHHHHHHhhhH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHhccCCCccc
Confidence            444455666666667665 7778888875432 34456777788888888887765    45556666666666655432


Q ss_pred             --------------HHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHHHHH--hcCCHhHHHHHHHHHHHHHHhcCCCC
Q 002658          137 --------------KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM--MEQNKGVQSGAAMCMAKMVECASDPP  200 (896)
Q Consensus       137 --------------R~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~eaL--~Eqnk~VQ~gAasALAkIIE~a~d~~  200 (896)
                                    .+.+-.+|..|.+.+   +     .....+++.|...+  ......++.+=...|-++++.++..-
T Consensus       128 ~~~~~~~~~~~~~~~~~vH~~L~~Il~lv---P-----~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P~L~  199 (563)
T PF05327_consen  128 AEWPGCPPEKRREIYERVHDALQKILRLV---P-----TSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYCPELR  199 (563)
T ss_dssp             HH---------------HHHHHHHHHHH----G-----GGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-GGGH
T ss_pred             cccchhhhhhhhhhHHHHHHHHHHHHHHc---C-----CCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcchHHHH
Confidence                          223455566555555   1     11233333333333  23466778887888888888776655


Q ss_pred             chhHHHHHHHHHHH
Q 002658          201 VVAFQKLCARICKL  214 (896)
Q Consensus       201 ~~yL~~LlPRL~kL  214 (896)
                      ...|.-++.||+++
T Consensus       200 ~~Il~lIi~rLi~i  213 (563)
T PF05327_consen  200 SDILSLIIERLIKI  213 (563)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            56788888888876

RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=82.08  E-value=13  Score=35.21  Aligned_cols=75  Identities=17%  Similarity=0.170  Sum_probs=58.8

Q ss_pred             cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhc--------CCChhhHHHHHHHHH
Q 002658          241 PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRF--------DKIKPVRDSMNEALQ  312 (896)
Q Consensus       241 ~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~avGe~L~Py~~~~I~~LE~~Rf--------DKvKpVRDaA~eALe  312 (896)
                      ..+...++..|...|.+.+|.+---|+..|-++....|+.|..++..-.-..+-++|        |....||+-+.+.++
T Consensus        32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~  111 (115)
T cd00197          32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ  111 (115)
T ss_pred             CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence            456778899999999999999999999999999999998888776443322232222        335679999999999


Q ss_pred             HHH
Q 002658          313 LWK  315 (896)
Q Consensus       313 ~WK  315 (896)
                      .|.
T Consensus       112 ~w~  114 (115)
T cd00197         112 LWA  114 (115)
T ss_pred             HHh
Confidence            996

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=81.86  E-value=32  Score=44.13  Aligned_cols=147  Identities=14%  Similarity=0.219  Sum_probs=112.1

Q ss_pred             hhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHHhcccccCCchhHhhhHHHHH
Q 002658           93 PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD-SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLF  171 (896)
Q Consensus        93 ~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrLkDpD-s~VR~Ac~~aLG~LA~~li~~~~e~~~~~~~~lL~pL~  171 (896)
                      +.+|..++.-||.+|-.|++...-    .||.+++-|.-.+ ..||+-..-+++-|+.+++        ....-++|.+.
T Consensus       945 ~~vra~~vvTlakmcLah~~LaKr----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT--------am~d~YiP~I~ 1012 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRLAKR----LMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT--------AMTDRYIPMIA 1012 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH--------HHHHHhhHHHH
Confidence            568889999999999988776543    5677778887665 5889999999999998884        33667888999


Q ss_pred             HHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc--ccCcccHHHHHH
Q 002658          172 EAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG--AIAPQSLEPLLQ  249 (896)
Q Consensus       172 eaL~Eqnk~VQ~gAasALAkIIE~a~d~~~~yL~~LlPRL~kLLks~s~kaK~alL~aIgSLA~vg--a~~~pyle~lLp  249 (896)
                      ..|-++.+-|...++.-|+.+++..   +..+-+.|+-|++-.|=+.+.+++.-+==+|+.+....  ..|+.+|-.+|-
T Consensus      1013 ~~L~Dp~~iVRrqt~ilL~rLLq~~---~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~ 1089 (1529)
T KOG0413|consen 1013 ASLCDPSVIVRRQTIILLARLLQFG---IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYII 1089 (1529)
T ss_pred             HHhcCchHHHHHHHHHHHHHHHhhh---hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence            9999999999999999999999842   22334457777777776678888887777889987665  345666666666


Q ss_pred             HHHHh
Q 002658          250 SIHEC  254 (896)
Q Consensus       250 ~L~e~  254 (896)
                      .|-++
T Consensus      1090 ~ln~~ 1094 (1529)
T KOG0413|consen 1090 ALNQA 1094 (1529)
T ss_pred             HHHHH
Confidence            66554

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=80.81  E-value=12  Score=38.83  Aligned_cols=95  Identities=15%  Similarity=0.198  Sum_probs=67.7

Q ss_pred             hHHHHHHHHHHHHHhcCCCC-CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhh----c
Q 002658           56 DTHQIAIEDLEKTIQTLSQE-SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRL----K  130 (896)
Q Consensus        56 DT~k~Aa~eLD~La~~L~pd-~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~P~LpkIL~~IlrrL----k  130 (896)
                      +.|+.|++.|..+....... .+..|+.++..-+.+ ...+|--|.+.|..++..++..+.++|..++..+-..|    +
T Consensus        42 elRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k  120 (169)
T PF08623_consen   42 ELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLK  120 (169)
T ss_dssp             HHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCC
Confidence            48999999999999865433 388899999888877 89999999999999999999988887777777666665    5


Q ss_pred             CCC--------hHHHHHHHHHHHHHHHHH
Q 002658          131 DSD--------SGMKEACRDSIGSLSKLY  151 (896)
Q Consensus       131 DpD--------s~VR~Ac~~aLG~LA~~l  151 (896)
                      +..        .....++..++..|...+
T Consensus       121 ~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i  149 (169)
T PF08623_consen  121 ENAVKQEIEKQQELIRSVLRAVKALNSKI  149 (169)
T ss_dssp             TTS-HHHHHHHHHHHHHHHHHHHHH-HSS
T ss_pred             CCcccccHHHHHHHHHHHHHHHHHHHHhC
Confidence            543        122334444555554444

; PDB: 4A0C_A 1U6G_C.

>KOG3961 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.63  E-value=13  Score=40.09  Aligned_cols=111  Identities=17%  Similarity=0.219  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhcCC----chhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc---c
Q 002658          206 KLCARICKLLSNQ----NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS---S  278 (896)
Q Consensus       206 ~LlPRL~kLLks~----s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~LsddDW~lRKaA~EaLgsLA~av---G  278 (896)
                      .++|.|+.-|..-    .|-++..+.++|-.   .|....|.+..++..|...|...|.++-+.++.+|..|....   |
T Consensus       114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~---~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG  190 (262)
T KOG3961|consen  114 PYLPLFFDGLAETDHPYRFVARQGITDLLLA---GGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVG  190 (262)
T ss_pred             HHHHHHhhhhhhcCCCcchhhhhcHHHHHHh---cccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccc
Confidence            3455555544332    33355554444432   336778899999999999999999999999888887766654   5


Q ss_pred             hHHHhhHHHHHHHHHhh-----------hcCCChhhHHHHHHHHHHHHHhcc
Q 002658          279 NLVIDGATSTLTVLEAC-----------RFDKIKPVRDSMNEALQLWKKIAG  319 (896)
Q Consensus       279 e~L~Py~~~~I~~LE~~-----------RfDKvKpVRDaA~eALe~WK~la~  319 (896)
                      ..|.||..+++.++...           .+||..-+=|...+.|+.+..-.|
T Consensus       191 ~aLVPfYRQlLp~~n~~k~~n~n~gd~idydk~~~igdlI~dTL~~LE~~GG  242 (262)
T KOG3961|consen  191 AALVPFYRQLLPVLNTFKNSNVNRGDGIDYDKNRNIGDLINDTLKHLERSGG  242 (262)
T ss_pred             hhhhhHHHHhhhhhhhhcccccccccccCccccccHHHHHHHHHHHHHHcCC
Confidence            99999999998877532           234555566888888888765443

>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins

Probab=80.47  E-value=52  Score=34.51  Aligned_cols=92  Identities=15%  Similarity=0.281  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHcCC--Chh--HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHH-HHhccc
Q 002658           39 VEMKQKILTSLSKLA--DRD--THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVC-ELHSEL  113 (896)
Q Consensus        39 ~~Lk~rll~~L~KLs--DRD--T~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IA-eg~~d~  113 (896)
                      -++|.-|+.||+.-+  +-+  .-+..+..+-.=+-.++.+..+-+..||.... ..++   ..|+..|--+. ...+++
T Consensus         2 ~eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~ef   77 (174)
T PF04510_consen    2 REIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYGEF   77 (174)
T ss_pred             cchHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhhhH
Confidence            468889999997663  222  11122221111111234445778888888543 2222   45777787777 668899


Q ss_pred             chhhHHHHHHHHHHhhcCCCh
Q 002658          114 TSTHVTKIISHIVKRLKDSDS  134 (896)
Q Consensus       114 I~P~LpkIL~~IlrrLkDpDs  134 (896)
                      +.|+|..+++.+.++|.+|..
T Consensus        78 l~~~~~~L~~~~~~~L~~p~~   98 (174)
T PF04510_consen   78 LIPFMENLLPEISKVLLPPEE   98 (174)
T ss_pred             HHHHHHHHHHHHHHHcCCchh
Confidence            999999999999999999964

Many of these members contain a repeated region.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=80.43  E-value=1.2e+02  Score=34.93  Aligned_cols=253  Identities=17%  Similarity=0.259  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhcccch
Q 002658           38 MVEMKQKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS  115 (896)
Q Consensus        38 ~~~Lk~rll~~L~KL--sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAeg~~d~I~  115 (896)
                      ..++.+.+..+|.++  ...+..+-+.+++.+...        .+-..|+... +..|. .+.+..+...+..       
T Consensus        12 P~ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~--------~mK~IL~G~~-e~ep~-~e~v~qLa~Ei~~-------   74 (335)
T PF08569_consen   12 PAELVRSLREALEKLDSKSDKKREKAQEEISKYLQ--------QMKEILYGDG-EPEPN-PEQVAQLAQEIYR-------   74 (335)
T ss_dssp             HHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHH--------HHHHHHHS-S-S-----HHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHhccccCcchhhHHHHHHHHHH--------HHHHHhcCCC-CCCCC-HHHHHHHHHHHHH-------
Confidence            346666677777777  234466666666665443        2233344322 22222 2222222211111       


Q ss_pred             hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc-c---CCchhHhhhHHHHHHHHhcCCHhHHHHHHHHHHH
Q 002658          116 THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE-E---NNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAK  191 (896)
Q Consensus       116 P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li~~~~-e---~~~~~~~~lL~pL~eaL~Eqnk~VQ~gAasALAk  191 (896)
                         ..++..++..|..=+-..|.-++...+.+.++-..... .   ....++++++..|+..-..++     -|..|=..
T Consensus        75 ---~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~d-----ial~~g~m  146 (335)
T PF08569_consen   75 ---SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPD-----IALNCGDM  146 (335)
T ss_dssp             ---HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTT-----THHHHHHH
T ss_pred             ---hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcc-----ccchHHHH
Confidence               12345566777777777777777777766666533210 0   000112445544444444222     34444445


Q ss_pred             HHHhcCCCC-chh-H-HHHHHHHHHHhcCCchhhHHHHHHHHHHHHh----c-cccCcccHHHHHHHHHHhhCCCCHHHH
Q 002658          192 MVECASDPP-VVA-F-QKLCARICKLLSNQNFMAKASLLPVVGSLSQ----V-GAIAPQSLEPLLQSIHECLGSTDWATR  263 (896)
Q Consensus       192 IIE~a~d~~-~~y-L-~~LlPRL~kLLks~s~kaK~alL~aIgSLA~----v-ga~~~pyle~lLp~L~e~LsddDW~lR  263 (896)
                      +-|+++... ..+ | ...+-++++.++.++|.+-.-+...+..+..    + ...+..+++.+......+|.+++.-+|
T Consensus       147 lRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk  226 (335)
T PF08569_consen  147 LRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK  226 (335)
T ss_dssp             HHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred             HHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence            556654432 111 1 1345568888899999876666666555532    1 134578888999988899999999999


Q ss_pred             HHHHHHHHHHHHhcc--hHHHhhHHH--HHHHHHhhhcCCChhhHHHHHHHHHHHHHhc
Q 002658          264 KAAADALSALALHSS--NLVIDGATS--TLTVLEACRFDKIKPVRDSMNEALQLWKKIA  318 (896)
Q Consensus       264 KaA~EaLgsLA~avG--e~L~Py~~~--~I~~LE~~RfDKvKpVRDaA~eALe~WK~la  318 (896)
                      +.++..|+.|..-..  ..+.-|+.+  -++++-...-|+-|.++   .||...+|-+.
T Consensus       227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq---~eAFhvFKvFV  282 (335)
T PF08569_consen  227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQ---FEAFHVFKVFV  282 (335)
T ss_dssp             HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHH---HHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhh---HHHHHHHHHHH
Confidence            999999999987766  556667643  36666677778888555   57899999887

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=80.42  E-value=1.1e+02  Score=34.51  Aligned_cols=209  Identities=13%  Similarity=0.141  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHcC----CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHH-----Hhc
Q 002658           41 MKQKILTSLSKL----ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCE-----LHS  111 (896)
Q Consensus        41 Lk~rll~~L~KL----sDRDT~k~Aa~eLD~La~~L~pd~Lp~fLs~L~es~ss~k~~vRKeAIllLG~IAe-----g~~  111 (896)
                      +-..+++.|..+    +.-.+...++..|-.-...++.+.-..++..+...+.+.++.+|+.-++.+|.+..     ...
T Consensus        19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~   98 (339)
T PF12074_consen   19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL   98 (339)
T ss_pred             hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence            334444444444    33334444444444433334333345667777777888999999999999999985     334


Q ss_pred             ccchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHh-cccccCCch----hH-------h--hhHHHHHHHHhcC
Q 002658          112 ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYL-NGKEENNGT----VV-------G--LFVKPLFEAMMEQ  177 (896)
Q Consensus       112 d~I~P~LpkIL~~IlrrLkDpDs~VR~Ac~~aLG~LA~~li-~~~~e~~~~----~~-------~--~lL~pL~eaL~Eq  177 (896)
                      ..+.+.++.++.++.+....|-+....-..  +|.++-.+. ....+....    .+       +  .+-+.++..|  .
T Consensus        99 ~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~--~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~  174 (339)
T PF12074_consen   99 KFAEPFLPKLLQSLKEASANPLQSAQNGEL--VGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A  174 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCccccccH--HHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C
Confidence            556778888888888888887765331111  111111110 000000000    00       0  0111222221  2


Q ss_pred             CHhHHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHh
Q 002658          178 NKGVQSGAAMCMAKMVECASDPPV-VAFQKLCARICKLLSNQ--NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHEC  254 (896)
Q Consensus       178 nk~VQ~gAasALAkIIE~a~d~~~-~yL~~LlPRL~kLLks~--s~kaK~alL~aIgSLA~vga~~~pyle~lLp~L~e~  254 (896)
                      .+....-.+.+|.++.-+...... .....+-.-++-++-++  ..++|..++.++..+.......  .-..++..+-+.
T Consensus       175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~--l~~~li~~l~~~  252 (339)
T PF12074_consen  175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL--LSKSLISGLWKW  252 (339)
T ss_pred             CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH--HHHHHHHHHHHH
Confidence            334444566677666665433222 11234445566666676  8899999999999875422111  333444455444


Q ss_pred             h
Q 002658          255 L  255 (896)
Q Consensus       255 L  255 (896)
                      |
T Consensus       253 l  253 (339)
T PF12074_consen  253 L  253 (339)
T ss_pred             H
Confidence            4

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	896
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	3e-13
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-13
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	6e-12
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-10
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-07
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	6e-07
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	6e-05
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	2e-04
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-05
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	2e-06
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	9e-05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-06
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-04
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	1e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-04
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-05
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-04
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-04
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	6e-04
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	8e-04
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	9e-04

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 69.3 bits (169), Expect = 3e-13
 Identities = 44/233 (18%), Positives = 89/233 (38%), Gaps = 17/233 (7%)

Query: 77  LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRL-KDSDSG 135
           L  +    Y+   + K  ++KES+ +L  +   H +L +     ++S + K + KDS+  
Sbjct: 13  LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72

Query: 136 MKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC 195
           +       +  L+K       +         V  L E   E+   V +     +  +   
Sbjct: 73  LVAMAGKCLALLAKGL----AKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS 128

Query: 196 ASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVG---SLSQVGAIAPQSLEPLLQSIH 252
            S       +     I + LSN+N   K+     +    + +Q  A+  + L+ L  S+ 
Sbjct: 129 TS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLV 182

Query: 253 ECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRD 305
           + L   D   R ++A+AL  L     +  +      L  ++  +  KIK  ++
Sbjct: 183 KTLNEPDPTVRDSSAEALGTLIKLMGDKAVT---PLLADVDPLKMAKIKECQE 232

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 72.4 bits (177), Expect = 3e-13
 Identities = 50/297 (16%), Positives = 108/297 (36%), Gaps = 16/297 (5%)

Query: 26  ASRSSSLSSHLAMVEMKQKILTSLSKLA-DRDTH--QIAIEDLEKTIQTLSQESL-PMLL 81
           AS+    +  L +  +K +I+   S LA D       +A+E      Q L QE L  +++
Sbjct: 185 ASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVM 244

Query: 82  NCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACR 141
             L +++ D    V+         + +          T ++      +KD ++ ++ A  
Sbjct: 245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAAS 302

Query: 142 DSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPV 201
             +    +      +     ++   +  + E + + N+ V+S  A  +  +         
Sbjct: 303 HKVKEFCEN--LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNT 360

Query: 202 VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWA 261
           +  + L       L ++    + +++  +  +++V  I  Q  + LL +I E      W 
Sbjct: 361 I--EHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-RQLSQSLLPAIVELAEDAKWR 417

Query: 262 TRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318
            R A  + +  LA        D   ++L    A   D +  +R     A    KK+ 
Sbjct: 418 VRLAIIEYMPLLAGQLGVEFFDEKLNSL--CMAWLVDHVYAIR---EAATSNLKKLV 469

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 60.0 bits (145), Expect = 2e-09
 Identities = 37/252 (14%), Positives = 84/252 (33%), Gaps = 19/252 (7%)

Query: 30  SSLSSHLAMVEMKQKILTSLSK-LADRDTH--QIAIEDLEKTIQTLSQESL-PMLLNCLY 85
             LS  L      + +L      L D         I +L+   + +    L   LL  + 
Sbjct: 349 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIV 408

Query: 86  ESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIG 145
           E + D K  V+   +  + L+             K+ S  +  L D    ++EA   ++ 
Sbjct: 409 ELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLK 466

Query: 146 SLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQ 205
            L +    GKE          +  +     + N   +     C+  + E          +
Sbjct: 467 KLVEK--FGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT--K 518

Query: 206 KLCARICKLLSNQNFMAKASLLPVVGSLSQV--GAIAPQSLEPLLQSIHECLGSTDWATR 263
            +   + ++  +     + ++   +  +  +   +     ++P+L+   +     D   +
Sbjct: 519 HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILE---KLTQDQDVDVK 575

Query: 264 KAAADALSALAL 275
             A +AL+ L+L
Sbjct: 576 YFAQEALTVLSL 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.1 bits (168), Expect = 4e-12
 Identities = 102/641 (15%), Positives = 178/641 (27%), Gaps = 164/641 (25%)

Query: 38  MVEMK---QKILTSLSK--LADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPK 92
             E +   + IL+      + + D   +  +D+ K+I  LS+E +  ++           
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDV--QDMPKSI--LSKEEIDHIIM---------S 57

Query: 93  PAVKKESVRLLALVCELHSELTSTHVTK--------IISHIVKRLKDSDSGMK--EACRD 142
                 ++RL   +     E+    V +        ++S I    +      +     RD
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 143 SIGS----LSKLYLNGKEENNGTVVGLFVKPLFEAMME--QNKGVQ------SG-----A 185
            + +     +K  ++  +             L +A++E    K V       SG      
Sbjct: 118 RLYNDNQVFAKYNVSRLQP---------YLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 186 AMCMAKMVECASDPPV--VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQS 243
            +C++  V+C  D  +  +  +  C     +L          LL     +          
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKN-CNSPETVLEMLQ-----KLLYQ---IDPNWTSRSDH 219

Query: 244 LEPLLQSIHECLGSTDWATRKAAADALSALALHSSN----LVIDGATSTLTVLEACRFD- 298
              +   IH                 L  L          LV+           A  F+ 
Sbjct: 220 SSNIKLRIHS------------IQAELRRLLKSKPYENCLLVLLN-VQNAKAWNA--FNL 264

Query: 299 --KI------KPVRDSMNEALQLWKKIAGKVDVGSDDQKSSPGGKAPEPGEDL--KNLN- 347
             KI      K V D ++ A            +  D          P+  + L  K L+ 
Sbjct: 265 SCKILLTTRFKQVTDFLSAA--------TTTHISLDHHSM---TLTPDEVKSLLLKYLDC 313

Query: 348 -PSDKRAELSAKGPLNGSSPASASLTKGKA--GNI----SEKAVVILKKKAPALSDKELN 400
            P D   E+    P   S  A  S+  G A   N      +K   I++     L   E  
Sbjct: 314 RPQDLPREVLTTNPRRLSIIA-ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 401 PEFFQNLSRGSGDLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRSNRMGNSQTDDFSV 460
            + F  LS      P    +P   L S    +  +SD   + +K     +   Q  + ++
Sbjct: 373 -KMFDRLSV----FPPSAHIPTILL-SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 461 SLNN--------------KHRSIDRGTAGGNGKDPRMRAPDVER--------------EL 492
           S+ +               HRSI          D     P                  E 
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 493 SGNRAGFSK--TDSQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMG-GSH--D 547
                 F     D      F+  K     I R           ++N LQ       +  D
Sbjct: 487 PERMTLFRMVFLDF----RFLEQK-----I-RHDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 548 SMVTLENRVRGLERVVEDMARDLSISSGRRGSNFAMGFEGS 588
           +    E  V  +   +  +  +L  S        A+  E  
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 5e-07
 Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 30/162 (18%)

Query: 33  SSHLAMVEMKQKIL--TSLSKLADR----DTHQIAIEDLEKTIQTLSQESLPMLLNCLYE 86
           +       +  KIL  T   ++ D      T  I+++    T+     E   +LL  L  
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP--DEVKSLLLKYLDC 313

Query: 87  SSNDPKPAVKKESVRLLALVCELHSELTST-----HV-----TKIISHIVKRLKDSDSGM 136
              D    V   + R L+++ E   +  +T     HV     T II   +  L+ ++   
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE--Y 371

Query: 137 KEACRD----------SIGSLSKLYLNGKEENNGTVVGLFVK 168
           ++                  LS ++ +  + +   VV    K
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 68.6 bits (166), Expect = 6e-12
 Identities = 40/299 (13%), Positives = 94/299 (31%), Gaps = 16/299 (5%)

Query: 44  KILTSLSKLADRDTHQIAIEDLEKTIQTLS---QESLPMLLNCLYESSNDPKPAVKKESV 100
           ++ ++++K  D      A++ +   +           P +L CL      P+ AV+K ++
Sbjct: 137 RLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTI 196

Query: 101 RLLALVCELHSELTSTHVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKEENN 159
             L  +      +       +I H++  L  +DS          I ++S+   +   E  
Sbjct: 197 IALGHLVMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL 253

Query: 160 GTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS-NQ 218
             ++      + +     +  ++          V             +     K L+ + 
Sbjct: 254 EKII----PLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDP 309

Query: 219 NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS 278
           N+             + + A      +      +       W  R+AAA  L A+     
Sbjct: 310 NYNYDDED----EDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH 365

Query: 279 NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGSDDQKSSPGGKAP 337
            ++ +   +    L +   ++ + V+  +  A     K    V     D  +   G+ P
Sbjct: 366 EMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETP 424

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 61.6 bits (149), Expect = 2e-10
 Identities = 36/241 (14%), Positives = 83/241 (34%), Gaps = 27/241 (11%)

Query: 71  TLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLK 130
              +  L  L+  L    +D    V K ++ ++ ++ +   +L    + K+ S +    K
Sbjct: 28  KYDESVLKKLIELL----DDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLL---KK 80

Query: 131 DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMA 190
                + +    + G ++K            +V   +  LF      ++  +   +  + 
Sbjct: 81  SEAIPLTQEIAKAFGQMAK--------EKPELVKSMIPVLFANYRIGDEKTKINVSYALE 132

Query: 191 KMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQS 250
           ++ +          +   +    +LS++N   K + L     +  +G  + + + P L  
Sbjct: 133 EIAKANPMLMASIVRDFMS----MLSSKNREDKLTAL---NFIEAMGENSFKYVNPFLPR 185

Query: 251 IHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEA 310
           I   L   D   R +A +AL  LA  +  L        +        D    V  ++ E 
Sbjct: 186 IINLLHDGDEIVRASAVEALVHLATLNDKLR-----KVVIKRLEELNDTSSLVNKTVKEG 240

Query: 311 L 311
           +
Sbjct: 241 I 241

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 52.7 bits (126), Expect = 4e-07
 Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 23/234 (9%)

Query: 49  LSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCE 108
           L  L+      +AI              +P L+N L    +     V   ++  L  +  
Sbjct: 217 LHNLSHHREGLLAI---------FKSGGIPALVNMLGSPVDS----VLFHAITTLHNLL- 262

Query: 109 LHSELTSTHVTK--IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLF 166
           LH E     V     +  +V  L  ++        D +  L+     G +E+   ++   
Sbjct: 263 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY----GNQESKLIILASG 318

Query: 167 -VKPLFEAMMEQNK-GVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKA 224
             + L   M       +    +  +  +  C+S+ P +        +   L++ +     
Sbjct: 319 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 378

Query: 225 SLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS 278
           + L  + +LS         +E LL ++ + LGS D      AA  LS L  ++ 
Sbjct: 379 NCLWTLRNLSDAATKQEG-MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 431

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 52.5 bits (125), Expect = 6e-07
 Identities = 34/268 (12%), Positives = 82/268 (30%), Gaps = 29/268 (10%)

Query: 45  ILTSLSKLADRDTHQI------AIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKE 98
           ++    +     + +I       +     +        +   +  L+  + D +P V+K 
Sbjct: 175 MIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKN 234

Query: 99  SVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEEN 158
             R L ++ E+  +    H+  I+ ++++R +D D  +     +   +L++  +      
Sbjct: 235 VCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLV 294

Query: 159 NGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ 218
               +   +  L   M   +  +                D       + C+     +   
Sbjct: 295 R--HLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGG--DDTISDWNLRKCSAAALDVLAN 350

Query: 219 NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS 278
            +                     + L  +L  + E L   +W  +++    L A+A    
Sbjct: 351 VY-------------------RDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM 391

Query: 279 NLVIDGATSTLTVLEACRFDKIKPVRDS 306
             +I      +  L  C  DK   VR  
Sbjct: 392 QGMIPYLPELIPHLIQCLSDKKALVRSI 419

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 45.9 bits (108), Expect = 6e-05
 Identities = 33/272 (12%), Positives = 83/272 (30%), Gaps = 35/272 (12%)

Query: 42  KQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVR 101
           K + L ++   +      +    +         ++ P LL  L    +       + +  
Sbjct: 92  KSECLNNIGDSSPLIRATVG-ILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFG 150

Query: 102 LLALVCE-----LHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE 156
            L  +CE     L S++    +  +I   ++  K S   ++      +       +  + 
Sbjct: 151 ALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQF----IISRT 206

Query: 157 ENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS 216
           +     +  F++ LF    ++   V+      +  ++E   D  +     +   + +   
Sbjct: 207 QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ 266

Query: 217 NQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGS------------------- 257
           +Q+            +L++        +  L + I   +                     
Sbjct: 267 DQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS 326

Query: 258 ------TDWATRKAAADALSALALHSSNLVID 283
                 +DW  RK +A AL  LA    + ++ 
Sbjct: 327 GGDDTISDWNLRKCSAAALDVLANVYRDELLP 358

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 43/335 (12%), Positives = 111/335 (33%), Gaps = 33/335 (9%)

Query: 7   KFTKPAKPTSQGQQSSSANASRSSSLSSHLAMVEMKQKILTSLSKLA---DRDTHQIAIE 63
           KF +  K +S   +S +        +S   A++      + +L  LA   + +  +    
Sbjct: 178 KFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCR 237

Query: 64  DLEKTIQTLSQE---SLPMLLNCLYESSNDPKPAVKKESVRLLALVCE--LHSELTSTHV 118
            L   ++         +  ++  + + + D    V  E+      + E  +  ++   H+
Sbjct: 238 ALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHL 297

Query: 119 TKIISHIVKRLK-------------------DSDSGMKEACRDSIGSLSKLYLNGKEENN 159
            K+I  +V  +K                   D         + S  +L  L    ++E  
Sbjct: 298 PKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE-- 355

Query: 160 GTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQN 219
             ++   +  L E +      V+    + +  + E      +    +L   + + LS++ 
Sbjct: 356 --LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK 413

Query: 220 FMAKASLLPVVGSLSQ--VGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS 277
            + ++     +   +   V       L+PL+  + + +  ++   ++AA  A + L   +
Sbjct: 414 ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473

Query: 278 SNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQ 312
              ++      L  L              + +A+ 
Sbjct: 474 CTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIG 508

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 51.7 bits (124), Expect = 8e-07
 Identities = 43/245 (17%), Positives = 83/245 (33%), Gaps = 23/245 (9%)

Query: 39  VEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKE 98
           VE  +    +L  L+      +AI              +P L+  L   S      V   
Sbjct: 74  VETARCTAGTLHNLSHHREGLLAI---------FKSGGIPALVKML--GSPVDS--VLFY 120

Query: 99  SVRLLALVCELHSELTSTHVTK--IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE 156
           ++  L  +  LH E     V     +  +V  L  ++        D +  L+     G +
Sbjct: 121 AITTLHNLL-LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY----GNQ 175

Query: 157 ENNGTVVGL-FVKPLFEAMMEQNK-GVQSGAAMCMAKMVECASDPPVVAFQKLCARICKL 214
           E+   ++     + L   M       +    +  +  +  C+S+ P +        +   
Sbjct: 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 235

Query: 215 LSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALA 274
           L++ +     + L  + +LS         +E LL ++ + LGS D      AA  LS L 
Sbjct: 236 LTDPSQRLVQNCLWTLRNLSDAATKQEG-MEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294

Query: 275 LHSSN 279
            ++  
Sbjct: 295 CNNYK 299

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 30/252 (11%), Positives = 75/252 (29%), Gaps = 34/252 (13%)

Query: 59  QIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST-- 116
            +   + +  +       +  L+  +  +    +  + + ++  L  +   H E      
Sbjct: 292 NLTCNNYKNKMMVCQVGGIEALVRTVLRAG--DREDITEPAICALRHLTSRHQEAEMAQN 349

Query: 117 --HVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKEENNGTVVGL-FVKPLFE 172
              +   +  +VK L       + +A    I +L+         N+  +     +  L +
Sbjct: 350 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-----LCPANHAPLREQGAIPRLVQ 404

Query: 173 AMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGS 232
            ++  ++  Q   +M   +             +     +  L  + +             
Sbjct: 405 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI---------V 455

Query: 233 LSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSN---LVIDGATSTL 289
           +  +  I             + L S     ++ AA  L  LA        +  +GAT+ L
Sbjct: 456 IRGLNTIPL---------FVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 506

Query: 290 TVLEACRFDKIK 301
           T L   R + + 
Sbjct: 507 TELLHSRNEGVA 518

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 50.6 bits (120), Expect = 2e-06
 Identities = 35/230 (15%), Positives = 75/230 (32%), Gaps = 26/230 (11%)

Query: 66  EKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSE--LTSTHVTKIIS 123
           +        ++LP +LN +    ND    VK+ +   +  + +  +E      H+  ++ 
Sbjct: 402 KVQRTYYVHQALPSILNLM----NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQ 457

Query: 124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEA--MMEQNKGV 181
             +  L+D           +I +L +                 V  L  A   ++     
Sbjct: 458 ACLIGLQDHPKVATNCSW-TIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNA 516

Query: 182 QSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAK---------------ASL 226
           ++ A   +  MVE A+D        +   +   L     + +               +++
Sbjct: 517 RASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNI 576

Query: 227 LPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGSTDWAT-RKAAADALSALA 274
           L V+ ++ +   +      + L+      L   D A        A+SALA
Sbjct: 577 LTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALA 626

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 45.2 bits (106), Expect = 9e-05
 Identities = 19/205 (9%), Positives = 60/205 (29%), Gaps = 30/205 (14%)

Query: 74  QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHI-VKRLKDS 132
           +     L+  + E++      V+  +   L  +   +      ++ + +  + +  +K  
Sbjct: 219 EGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP 278

Query: 133 DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM 192
           +  +     +   ++ +  ++   E             +   +   K V       + + 
Sbjct: 279 NDKVASMTVEFWSTICEEEIDIAYELAQFPQ--SPLQSYNFALSSIKDVVPNLLNLLTRQ 336

Query: 193 VECASD---PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQ 249
            E   D      ++         +   N                           EP+L+
Sbjct: 337 NEDPEDDDWNVSMSAGACLQLFAQNCGNHIL------------------------EPVLE 372

Query: 250 SIHECLGSTDWATRKAAADALSALA 274
            + + + + +W  R+AA  A  ++ 
Sbjct: 373 FVEQNITADNWRNREAAVMAFGSIM 397

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 42/245 (17%), Positives = 83/245 (33%), Gaps = 23/245 (9%)

Query: 39  VEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKE 98
           VE  +    +L  L+      +AI              +P L+  L    +     V   
Sbjct: 71  VETARCTAGTLHNLSHHREGLLAI---------FKSGGIPALVKMLGSPVDS----VLFY 117

Query: 99  SVRLLALVCELHSELTSTHVTK--IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE 156
           ++  L  +  LH E     V     +  +V  L  ++        D +  L+     G +
Sbjct: 118 AITTLHNLL-LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY----GNQ 172

Query: 157 ENNGTVVGL-FVKPLFEAMMEQNK-GVQSGAAMCMAKMVECASDPPVVAFQKLCARICKL 214
           E+   ++     + L   M       +    +  +  +  C+S+ P +        +   
Sbjct: 173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 232

Query: 215 LSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALA 274
           L++ +     + L  + +LS         +E LL ++ + LGS D      AA  LS L 
Sbjct: 233 LTDPSQRLVQNCLWTLRNLSDAATKQEG-MEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291

Query: 275 LHSSN 279
            ++  
Sbjct: 292 CNNYK 296

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 30/252 (11%), Positives = 74/252 (29%), Gaps = 34/252 (13%)

Query: 59  QIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHV 118
            +   + +  +       +  L+  +  +    +  + + ++  L  +   H E      
Sbjct: 289 NLTCNNYKNKMMVCQVGGIEALVRTVLRAG--DREDITEPAICALRHLTSRHQEAEMAQN 346

Query: 119 T----KIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKEENNGTVVGL-FVKPLFE 172
                  +  +VK L       + +A    I +L+         N+  +     +  L +
Sbjct: 347 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-----LCPANHAPLREQGAIPRLVQ 401

Query: 173 AMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGS 232
            ++  ++  Q   +M   +             +     +  L  + +             
Sbjct: 402 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI---------V 452

Query: 233 LSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSN---LVIDGATSTL 289
           +  +  I             + L S     ++ AA  L  LA        +  +GAT+ L
Sbjct: 453 IRGLNTIPL---------FVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 503

Query: 290 TVLEACRFDKIK 301
           T L   R + + 
Sbjct: 504 TELLHSRNEGVA 515

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 24/234 (10%), Positives = 67/234 (28%), Gaps = 15/234 (6%)

Query: 84  LYESSNDPKPAVKKESVRLLALVCELHS---ELTSTHVTKIISHIVKRL-KDSDSGMKEA 139
             E     K   + E++          +   + TS + + ++      + KD++      
Sbjct: 21  FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80

Query: 140 CRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD- 198
              S+  +           +   V L   PL +   E+   V       +  + +     
Sbjct: 81  AAQSVELICDKL--KTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL 138

Query: 199 PPVVAFQKLCARICKLLSNQNFMAKASLLPVVG-----SLSQVGAIAPQSLEPLLQSIHE 253
                 + +   I + + ++    +     +              +     + ++  + +
Sbjct: 139 ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQ 198

Query: 254 CLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSM 307
            +  T  A R    ++ + L              TL  L+  +  KI+    ++
Sbjct: 199 IVNDTQPAIRTIGFESFAILIKIFGMNTF---VKTLEHLDNLKRKKIEETVKTL 249

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 45/238 (18%), Positives = 92/238 (38%), Gaps = 57/238 (23%)

Query: 74  QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD 133
            E + M +  L     D    V++ +   L    ++  E       + +  ++K LKD D
Sbjct: 18  PEKVEMYIKNL----QDDSYYVRRAAAYALG---KIGDE-------RAVEPLIKALKDED 63

Query: 134 SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV 193
           + ++ A  D++G +      G E          V+PL +A+ +++  V+  AA+ + ++ 
Sbjct: 64  AWVRRAAADALGQI------GDER--------AVEPLIKALKDEDGWVRQSAAVALGQI- 108

Query: 194 ECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHE 253
               D   V        + K L ++++  + +      +L ++G    +++EPL+    +
Sbjct: 109 ---GDERAVE------PLIKALKDEDWFVRIA---AAFALGEIGD--ERAVEPLI----K 150

Query: 254 CLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEAL 311
            L   D   R++AADAL  +          G       +E          R      L
Sbjct: 151 ALKDEDGWVRQSAADALGEI----------GGERVRAAMEKLAETGTGFARKVAVNYL 198

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 32/201 (15%), Positives = 75/201 (37%), Gaps = 47/201 (23%)

Query: 73  SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS 132
            + ++  L+  L     D    V++ +   L    ++  E       + +  ++K LKD 
Sbjct: 48  DERAVEPLIKAL----KDEDAWVRRAAADALG---QIGDE-------RAVEPLIKALKDE 93

Query: 133 DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM 192
           D  ++++   ++G +      G E          V+PL +A+ +++  V+  AA  + ++
Sbjct: 94  DGWVRQSAAVALGQI------GDERA--------VEPLIKALKDEDWFVRIAAAFALGEI 139

Query: 193 VECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIH 252
                D   V        + K L +++   + S      +L ++G    +    + +   
Sbjct: 140 ----GDERAVE------PLIKALKDEDGWVRQS---AADALGEIGG--ERVRAAMEK--- 181

Query: 253 ECLGSTDWATRKAAADALSAL 273
               +     RK A + L   
Sbjct: 182 -LAETGTGFARKVAVNYLETH 201

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 45/237 (18%), Positives = 92/237 (38%), Gaps = 57/237 (24%)

Query: 75  ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDS 134
           E + M +  L     D    V++ +   L    ++  E       + +  ++K LKD D+
Sbjct: 14  EKVEMYIKNL----QDDSYYVRRAAAYALG---KIGDE-------RAVEPLIKALKDEDA 59

Query: 135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE 194
            ++ A  D++G +      G E          V+PL +A+ +++  V+  AA+ + ++  
Sbjct: 60  WVRRAAADALGQI------GDERA--------VEPLIKALKDEDGWVRQSAAVALGQI-- 103

Query: 195 CASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHEC 254
              D   V        + K L ++++  + +      +L ++G    +++EPL+    + 
Sbjct: 104 --GDERAVE------PLIKALKDEDWFVRIA---AAFALGEIGD--ERAVEPLI----KA 146

Query: 255 LGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEAL 311
           L   D   R++AADAL  +          G       +E          R      L
Sbjct: 147 LKDEDGWVRQSAADALGEI----------GGERVRAAMEKLAETGTGFARKVAVNYL 193

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 32/201 (15%), Positives = 75/201 (37%), Gaps = 47/201 (23%)

Query: 73  SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS 132
            + ++  L+  L     D    V++ +   L    ++  E       + +  ++K LKD 
Sbjct: 43  DERAVEPLIKAL----KDEDAWVRRAAADALG---QIGDE-------RAVEPLIKALKDE 88

Query: 133 DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM 192
           D  ++++   ++G +      G E          V+PL +A+ +++  V+  AA  + ++
Sbjct: 89  DGWVRQSAAVALGQI------GDERA--------VEPLIKALKDEDWFVRIAAAFALGEI 134

Query: 193 VECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIH 252
                D   V        + K L +++   + S      +L ++G    +    + +   
Sbjct: 135 ----GDERAVE------PLIKALKDEDGWVRQS---AADALGEIGG--ERVRAAMEK--- 176

Query: 253 ECLGSTDWATRKAAADALSAL 273
               +     RK A + L   
Sbjct: 177 -LAETGTGFARKVAVNYLETH 196

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 30/145 (20%)

Query: 167 VKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASL 226
           + P    M ++NK V+   +  +++M + A +P           + + LSN+++  + + 
Sbjct: 14  LVPRGSHMADENKWVRRDVSTALSRMGDEAFEP-----------LLESLSNEDWRIRGA- 61

Query: 227 LPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGAT 286
                 +        +++EPL+    + L       R  AA +L  +          G  
Sbjct: 62  --AAWIIGNFQD--ERAVEPLI----KLLEDDSGFVRSGAARSLEQI----------GGE 103

Query: 287 STLTVLEACRFDKIKPVRDSMNEAL 311
                +E          R      L
Sbjct: 104 RVRAAMEKLAETGTGFARKVAVNYL 128

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 43/284 (15%), Positives = 100/284 (35%), Gaps = 33/284 (11%)

Query: 25  NASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCL 84
                 S   ++ + ++   ++T LS   + +   +A+ ++   +Q    E L   +   
Sbjct: 268 ELLPKDSDYYNMLLKKLAPPLVTLLSG--EPEVQYVALRNINLIVQK-RPEILKQEIKVF 324

Query: 85  YESSNDPKPAVKKESVRLLALVCELHSELTSTH-VTKIISHIVKRLKDSDSGMKEACRDS 143
           +   NDP        V+L  L  ++   L S   + ++++ + +   + D         +
Sbjct: 325 FVKYNDP------IYVKLEKL--DIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRA 376

Query: 144 IGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVA 203
           IG  +                  V  L + +  +   V   A + +  +     +     
Sbjct: 377 IGRCA--------IKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN----K 424

Query: 204 FQKLCARICKLLSN-QNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWAT 262
           ++ + A +C+ L +     A+A+++ +VG  ++    A + LE  L+  H+         
Sbjct: 425 YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQV---- 480

Query: 263 RKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKP-VRD 305
            +     L+A+         +       VL     D   P +RD
Sbjct: 481 -QLT--LLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRD 521

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 41.9 bits (98), Expect = 8e-04
 Identities = 26/245 (10%), Positives = 68/245 (27%), Gaps = 55/245 (22%)

Query: 39  VEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKE 98
           ++ +        ++        + E        +    +P L+  + E+       ++ E
Sbjct: 101 MQEQLSATVKFRQIL-------SREHRPPIDVVIQAGVVPRLVEFMRENQP---EMLQLE 150

Query: 99  SVRLLALVCELHSELTSTHVT-KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEE 157
           +   L  +    S  T   V    +   ++ L      +KE    ++G+++        +
Sbjct: 151 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAG----DSTD 206

Query: 158 NNGTVVGLF-VKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS 216
               V+    ++P+          +   A   ++ +  C    P   +  +         
Sbjct: 207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL--CRGKKPQPDWSVV--------- 255

Query: 217 NQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALH 276
                                          L ++ + + S D  T   A  A+S L+  
Sbjct: 256 ----------------------------SQALPTLAKLIYSMDTETLVDACWAISYLSDG 287

Query: 277 SSNLV 281
               +
Sbjct: 288 PQEAI 292

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 41.8 bits (98), Expect = 9e-04
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 14/139 (10%)

Query: 153 NGKEENNGTVV--GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP---VVAFQKL 207
           +  + NN  +   G+    + E +  ++   Q  A     K++    +PP   V++   +
Sbjct: 6   HEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGV 65

Query: 208 CARICKLLSNQNFMAK----ASLLPVV--GSLSQVGAIAPQSLEPLLQSIHECLGSTDWA 261
            AR  + L  +         A +L  +  G+  Q   +      P+     E L S    
Sbjct: 66  VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIF---IELLSSEFED 122

Query: 262 TRKAAADALSALALHSSNL 280
            ++ A  AL  +A  S+  
Sbjct: 123 VQEQAVWALGNIAGDSTMC 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	896
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-14
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	1e-06
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.004
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	6e-04

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (181), Expect = 5e-14
 Identities = 35/252 (13%), Positives = 81/252 (32%), Gaps = 18/252 (7%)

Query: 78  PMLLNCLYESSNDPKPAVKKESVR-LLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM 136
              ++ L E         +  +   L+  + +   +L      K++  I+K L+D +  +
Sbjct: 2   SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEV 61

Query: 137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA 196
           +      +G L               V   V  L   M+   + ++  +++ +  ++   
Sbjct: 62  QNLAVKCLGPLVSKVKE-------YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGEL 114

Query: 197 SDPPVVA--FQKLCARICKLLSNQ-----NFMAKASLLPVVGSLSQV-GAIAPQSLEPLL 248
                 +     +C +I   L++      +   +   L ++  +    G +       +L
Sbjct: 115 PPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSIL 174

Query: 249 QSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMN 308
             +   L S   A RK    AL  L +   N+V       L  L     +       +  
Sbjct: 175 TCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHL--LSELSKNDSMSTTRTYI 232

Query: 309 EALQLWKKIAGK 320
           + +    + AG 
Sbjct: 233 QCIAAISRQAGH 244

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 2e-05
 Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 14/127 (11%)

Query: 30  SSLSSHLAMVEMKQKILTSLSKLADRDTH---QIAIEDLEKTIQTLSQES-----LPMLL 81
             L            I+  +  ++    +      +  +    +   Q+      LP +L
Sbjct: 466 KKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVL 525

Query: 82  NCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACR 141
                   DP   V+    + L  +  +     ST  +++   + K  +D D  +K   +
Sbjct: 526 RMA----GDPVANVRFNVAKSLQKIGPILDN--STLQSEVKPILEKLTQDQDVDVKYFAQ 579

Query: 142 DSIGSLS 148
           +++  LS
Sbjct: 580 EALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 31/205 (15%), Positives = 72/205 (35%), Gaps = 17/205 (8%)

Query: 74  QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD 133
           ++    LL  + E + D K  V+   +  + L+             K+ S  +  L D  
Sbjct: 397 RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHV 454

Query: 134 SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV 193
             ++EA   ++  L + +  GKE          +  +     + N   +     C+  + 
Sbjct: 455 YAIREAATSNLKKLVEKF--GKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLS 508

Query: 194 ECASDPPVVAFQKLCARICKLLSNQNF---MAKASLLPVVGSLSQVGAIAPQSLEPLLQS 250
           E          + +   + ++  +         A  L  +G +     +  + ++P+L+ 
Sbjct: 509 EVCGQDITT--KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSE-VKPILEK 565

Query: 251 IHECLGSTDWATRKAAADALSALAL 275
           +       D   +  A +AL+ L+L
Sbjct: 566 L---TQDQDVDVKYFAQEALTVLSL 587

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	896
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.93
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.8
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.76
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.75
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.75
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.74
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.72
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.68
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.45
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.4
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.37
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.34
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.24
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.16
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.1
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.09
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.07
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.06
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.99
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.9
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.84
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.79
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.74
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.67
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.82
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.71
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.53
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.23
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	94.62
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	94.62
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	92.48
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	88.88
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	87.42

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.1e-23  Score=174.61  Aligned_cols=266  Identities=14%  Similarity=0.110  Sum_probs=225.6

Q ss_pred             HHHHHHHHHCC--CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC-HHHH
Q ss_conf             99999999707--99257999999999997308999778999998622299990668999999999999821002-4569
Q 002658           42 KQKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT-STHV  118 (896)
Q Consensus        42 k~rll~~L~KL--sDRDT~k~A~~eLD~ia~~L~pd~Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d~i-~P~L  118 (896)
                      -++++++|..+  +|.+.++.|.+.|.++..  .| .+..||..|.....+.+..+|..|..+|++....++..+ .+..
T Consensus        10 l~ql~~~L~~~~s~d~~~r~~A~~~L~~~~~--~p-~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~   86 (888)
T d1qbkb_          10 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQ--YP-DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVT   86 (888)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTSTTTSTT--ST-TTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTCC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--CC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             9999999997639799999999999999773--99-89999999997457999899999999999999870023999999


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC--
Q ss_conf             999999997435999678999999999999997316666870337666999999982399869999999999999814--
Q 002658          119 TKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA--  196 (896)
Q Consensus       119 pkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~eqnk~VQ~gAAsALAkIIE~a--  196 (896)
                      ..|...+++.|.|+++.||.+++.+++.++...   +.    ..||++++.|++.+.+++..++.+|..||.++||+.  
T Consensus        87 ~~Ik~~ll~~l~~~~~~vr~~~~~~i~~i~~~~---~~----~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~  159 (888)
T d1qbkb_          87 DFIKSECLNNIGDSSPLIRATVGILITTIASKG---EL----QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE  159 (888)
T ss_dssp             HHHHHHHTTGGGCCCSSTTTTTTTTTHHHHTTT---SS----CSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH---CC----CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999982998899999999999999871---82----11299999999986799989999999999999998688


Q ss_pred             ---CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             ---99992248999999999712984464999999999998402-22722289999999996479999999999999999
Q 002658          197 ---SDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSA  272 (896)
Q Consensus       197 ---~d~~~~yL~~LiPRLlkLLksps~kaK~alLsaIgSLa~vg-a~~~pyld~lLp~L~e~Lss~DW~vRKaAaEaLgs  272 (896)
                         .+.....++.++|+++..+++++..+|..++.+++.++... ..+..+++.+++.++..+.++++.+|+.++++|+.
T Consensus       160 ~~~~~~~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~  239 (888)
T d1qbkb_         160 ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVM  239 (888)
T ss_dssp             HHHTC---CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             76077888799999999999863888899999999877788740388999999999988876079306779999999998


Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             998623679953989999998621198723489999999999984058
Q 002658          273 LALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (896)
Q Consensus       273 LA~avge~L~Py~~siI~aLE~~RfDKvKpVRDaa~eALelWK~I~~~  320 (896)
                      ++...++.+.||+..+++++.....|..+   +++.+|++||..++..
T Consensus       240 l~~~~~~~l~~~l~~i~~~~l~~~~~~~e---~v~~~a~ef~~~~~e~  284 (888)
T d1qbkb_         240 LLEVRMDRLLPHMHNIVEYMLQRTQDQDE---NVALEACEFWLTLAEQ  284 (888)
T ss_dssp             TSCSCTTTTTTTTTTTTTTTTTTTTSSCH---HHHHHHHHHHCCCCSG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHH
T ss_conf             99876788899888789999986289868---9999889999999971

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=2.3e-16  Score=127.96  Aligned_cols=267  Identities=13%  Similarity=0.102  Sum_probs=199.8

Q ss_pred             HHHHHHHHC-C--CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC------
Q ss_conf             999999970-7--9925799999999999730899977899999862229999066899999999999982100------
Q 002658           43 QKILTSLSK-L--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL------  113 (896)
Q Consensus        43 ~rll~~L~K-L--sDRDT~k~A~~eLD~ia~~L~pd~Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d~------  113 (896)
                      .++.++|.. +  .|.+.++.|.+.|.++..+-.+ .+...|..+.. ..+.+..+|..|+.+|++....++..      
T Consensus         4 ~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~-~~~~~l~~il~-~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~   81 (861)
T d2bpta1           4 AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFL-QFAGLSSQVLI-DENTKLEGRILAALTLKNELVSKDSVKTQQFA   81 (861)
T ss_dssp             HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHT-CTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             99999999985598999999999999998744716-89999999997-69999899999999999985114502235677


Q ss_pred             ------C-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC-CCHHHHHHH
Q ss_conf             ------2-45699999999974359996789999999999999973166668703376669999999823-998699999
Q 002658          114 ------T-STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME-QNKGVQSGA  185 (896)
Q Consensus       114 ------i-~P~LpkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~e-qnk~VQ~gA  185 (896)
                            + ......|...++..|.++++.||.+++.+++.++......      ..||++++.|++.+.. .+..++.+|
T Consensus        82 ~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~------~~wpeli~~L~~~~~s~~~~~~~~~a  155 (861)
T d2bpta1          82 QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPH------GAWPELMKIMVDNTGAEQPENVKRAS  155 (861)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG------TCCHHHHHHHHHHTSTTSCHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             666732999999999999999883998899999999999999976776------76388999999985699958999999


Q ss_pred             HHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHC-CC--CCCCCHHHHHHHHHHHHCC
Q ss_conf             999999998149999---22489999999997129--8446499999999999840-22--2722289999999996479
Q 002658          186 AMCMAKMVECASDPP---VVAFQKLCARICKLLSN--QNFMAKASLLPVVGSLSQV-GA--IAPQSLEPLLQSIHECLGS  257 (896)
Q Consensus       186 AsALAkIIE~a~d~~---~~yL~~LiPRLlkLLks--ps~kaK~alLsaIgSLa~v-ga--~~~pyld~lLp~L~e~Lss  257 (896)
                      ..||..+||..+...   .+.+..+++.++..+.+  ++..+|..++.+++.++.. ..  ........+++.|.+++.+
T Consensus       156 l~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  235 (861)
T d2bpta1         156 LLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQA  235 (861)
T ss_dssp             HHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999883477888898899999999998733347899999999999999998767677666544777767988569


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999999999862367995398999999-8621198723489999999999984058
Q 002658          258 TDWATRKAAADALSALALHSSNLVIDGATSTLTVL-EACRFDKIKPVRDSMNEALQLWKKIAGK  320 (896)
Q Consensus       258 ~DW~vRKaAaEaLgsLA~avge~L~Py~~siI~aL-E~~RfDKvKpVRDaa~eALelWK~I~~~  320 (896)
                      +++.+|+.++++|..++...++.+.||+..++..+ .....+..+.+|.   .++++|..++..
T Consensus       236 ~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~---~~~~~l~~l~~~  296 (861)
T d2bpta1         236 EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVAS---MTVEFWSTICEE  296 (861)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHH---HHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH---HHHHHHHHHHHH
T ss_conf             9899999999999999887789999999989999999873275499999---999999999999

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=2.2e-15  Score=121.18  Aligned_cols=276  Identities=14%  Similarity=0.166  Sum_probs=183.5

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHCCC-
Q ss_conf             69999999999997079925799999999999730-899977899999862229999-066899999999999982100-
Q 002658           37 AMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQT-LSQESLPMLLNCLYESSNDPK-PAVKKESVRLLALVCELHSEL-  113 (896)
Q Consensus        37 ~~~~Lk~rll~~L~KLsDRDT~k~A~~eLD~ia~~-L~pd~Lp~lLs~L~es~ss~k-s~vRKeAIlLLG~iAegh~d~-  113 (896)
                      ....+|+.++++|.. .+...++.++..+-.++.. ++...+|-+++.|.+...+.+ ..+|..++.+|+.+++..+.. 
T Consensus        92 ~~~~ik~~ll~~l~~-~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~  170 (861)
T d2bpta1          92 AKNQIKTNALTALVS-IEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQS  170 (861)
T ss_dssp             HHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTS
T ss_pred             HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999998839-9889999999999999997677676388999999985699958999999999999998834778


Q ss_pred             --CHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             --245699999999974359--9967899999999999999731666687033766699999998239986999999999
Q 002658          114 --TSTHVTKIISHIVKRLKD--SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCM  189 (896)
Q Consensus       114 --i~P~LpkIIs~IirrLkD--pDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~eqnk~VQ~gAAsAL  189 (896)
                        +.+++..|+..+++.+..  ++..||.++..+++.+..++... + ........+++.|++++.+.++.++..++.||
T Consensus       171 ~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  248 (861)
T d2bpta1         171 QALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN-M-EREGERNYLMQVVCEATQAEDIEVQAAAFGCL  248 (861)
T ss_dssp             STTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH-H-TSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             888988999999999987333478999999999999999987676-7-76665447777679885699899999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHCC-----------C-------CCCCCHHHHHHH
Q ss_conf             9999814999922489999999-99712984464999999999998402-----------2-------272228999999
Q 002658          190 AKMVECASDPPVVAFQKLCARI-CKLLSNQNFMAKASLLPVVGSLSQVG-----------A-------IAPQSLEPLLQS  250 (896)
Q Consensus       190 AkIIE~a~d~~~~yL~~LiPRL-lkLLksps~kaK~alLsaIgSLa~vg-----------a-------~~~pyld~lLp~  250 (896)
                      ..+++..+....+|+..++..+ ....++.+..++..++..+.+++...           .       ...+++..+++.
T Consensus       249 ~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~  328 (861)
T d2bpta1         249 CKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPN  328 (861)
T ss_dssp             HHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99988778999999998999999987327549999999999999999998899999862036789999999999999999


Q ss_pred             ---------------------------------------------HHHHHCCCCHHHHHHHHHHHHHHHHHCC-HHHHHH
Q ss_conf             ---------------------------------------------9996479999999999999999998623-679953
Q 002658          251 ---------------------------------------------IHECLGSTDWATRKAAADALSALALHSS-NLVIDG  284 (896)
Q Consensus       251 ---------------------------------------------L~e~Lss~DW~vRKaAaEaLgsLA~avg-e~L~Py  284 (896)
                                                                   +...+.+.+|..|.+++.+++.++.... ..+.+|
T Consensus       329 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~  408 (861)
T d2bpta1         329 LLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYY  408 (861)
T ss_dssp             HHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             99998873024440147788889999888776033146654111135420017778888899899998841026668887


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             9899999986211987234899999999999
Q 002658          285 ATSTLTVLEACRFDKIKPVRDSMNEALQLWK  315 (896)
Q Consensus       285 ~~siI~aLE~~RfDKvKpVRDaa~eALelWK  315 (896)
                      ...++..+...-.|....||+.+..++....
T Consensus       409 l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~  439 (861)
T d2bpta1         409 VHQALPSILNLMNDQSLQVKETTAWCIGRIA  439 (861)
T ss_dssp             HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             8999999988733762056668988999999

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.4e-15  Score=120.94  Aligned_cols=265  Identities=14%  Similarity=0.171  Sum_probs=119.4

Q ss_pred             HHHHHHCC--CCHHHHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             99999707--9925799999999999730----89997789999986222999906689999999999998210024569
Q 002658           45 ILTSLSKL--ADRDTHQIAIEDLEKTIQT----LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHV  118 (896)
Q Consensus        45 ll~~L~KL--sDRDT~k~A~~eLD~ia~~----L~pd~Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d~i~P~L  118 (896)
                      +.++|.|+  .|.|-+-+|+..|-+..+.    ++.+...-++..|+...+++++.||..|+++|+.++....   .+.+
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~---~~~~   81 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK---EYQV   81 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC---HHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC---HHHH
T ss_conf             9999986679887299999999999872301445768899999999999679987999999999999997676---8669


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999743599967899999999999999731666--6870337666999999982-39986999999999999981
Q 002658          119 TKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE--ENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVEC  195 (896)
Q Consensus       119 pkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~--~~~~~~~~~lLkPLleaL~-eqnk~VQ~gAAsALAkIIE~  195 (896)
                      +.|+..++..+.+++..+|++++.++..+...+.....  .-.....+.+++.|...+. ..+..++..|..+|..++..
T Consensus        82 ~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~  161 (1207)
T d1u6gc_          82 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR  161 (1207)
T ss_dssp             HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999999985689632659999999999996632002311278899999999987634777789999999999999987


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-C-CCCCCCHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Q ss_conf             49999224899999999971298446499999999999840-2-227222899999999964-79999999999999999
Q 002658          196 ASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQV-G-AIAPQSLEPLLQSIHECL-GSTDWATRKAAADALSA  272 (896)
Q Consensus       196 a~d~~~~yL~~LiPRLlkLLksps~kaK~alLsaIgSLa~v-g-a~~~pyld~lLp~L~e~L-ss~DW~vRKaAaEaLgs  272 (896)
                      .+....++...+++.|...|+++...+|..++.||+.++.. + ..+.    .+++.+.+.+ .+..+.+|+.++++|+.
T Consensus       162 ~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~----~~~~~ll~~l~~~~~~~~~~~~~~~l~~  237 (1207)
T d1u6gc_         162 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFV----DLIEHLLSELSKNDSMSTTRTYIQCIAA  237 (1207)
T ss_dssp             TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CT----THHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHH----HHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             567668779999999998808999899999999999999877998799----9999999987059988999999999999


Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99862367995398999999862119872348999999999998
Q 002658          273 LALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKK  316 (896)
Q Consensus       273 LA~avge~L~Py~~siI~aLE~~RfDKvKpVRDaa~eALelWK~  316 (896)
                      |+...|..|.+|+..++..+..+..+....+|+.+.++++.|..
T Consensus       238 l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~  281 (1207)
T d1u6gc_         238 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR  281 (1207)
T ss_dssp             HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             99876154677799999999988258617778999999999998

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.2e-16  Score=128.07  Aligned_cols=255  Identities=13%  Similarity=0.141  Sum_probs=199.0

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCC---------HHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             92579999999999973089997---------789999986222-99990668999999999999821002456999999
Q 002658           54 DRDTHQIAIEDLEKTIQTLSQES---------LPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHSELTSTHVTKIIS  123 (896)
Q Consensus        54 DRDT~k~A~~eLD~ia~~L~pd~---------Lp~lLs~L~es~-ss~ks~vRKeAIlLLG~iAegh~d~i~P~LpkIIs  123 (896)
                      +.+.+..+...|..++..++...         ...++..+.... ...++.+|.+++.+|+.++..++..+.++.+.++.
T Consensus        96 ~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~  175 (1207)
T d1u6gc_          96 KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILT  175 (1207)
T ss_dssp             SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             63265999999999999663200231127889999999998763477778999999999999998756766877999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             9997435999678999999999999997316666870337666999999982-399869999999999999814999922
Q 002658          124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDPPVV  202 (896)
Q Consensus       124 ~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~-eqnk~VQ~gAAsALAkIIE~a~d~~~~  202 (896)
                      .++..|.++.+.||..++.+++.++.++.+       ..+..++..+++.+. +.+..+..+++.||..++...+....+
T Consensus       176 ~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~-------~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  248 (1207)
T d1u6gc_         176 CLLPQLTSPRLAVRKRTIIALGHLVMSCGN-------IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE  248 (1207)
T ss_dssp             HHGGGGGCSSHHHHHHHHHHHHHHTTTC-----------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             999880899989999999999999987799-------8799999999998705998899999999999999876154677


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHH--------------------------
Q ss_conf             48999999999712984464999999999998402-227222899999999964--------------------------
Q 002658          203 AFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECL--------------------------  255 (896)
Q Consensus       203 yL~~LiPRLlkLLksps~kaK~alLsaIgSLa~vg-a~~~pyld~lLp~L~e~L--------------------------  255 (896)
                      |++.++|.+++.++..+...|..++.++.+++... ..+.+|+..+++.+..++                          
T Consensus       249 ~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~  328 (1207)
T d1u6gc_         249 YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDD  328 (1207)
T ss_dssp             SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----------------------
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHH
T ss_conf             79999999998825861777899999999999867465445599999999998740730003467887765554011013


Q ss_pred             -----------CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             -----------799999999999999999986236799539899999986211987234899999999999
Q 002658          256 -----------GSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWK  315 (896)
Q Consensus       256 -----------ss~DW~vRKaAaEaLgsLA~avge~L~Py~~siI~aLE~~RfDKvKpVRDaa~eALelWK  315 (896)
                                 .+..|.+|+.++++|..++...++.+.++...++..+...-.|..+.||..+..++....
T Consensus       329 ~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~  399 (1207)
T d1u6gc_         329 DQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL  399 (1207)
T ss_dssp             -------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             56678887522013389999999999868988899999999999999999845985489999999999999

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.1e-24  Score=185.38  Aligned_cols=231  Identities=16%  Similarity=0.182  Sum_probs=199.9

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             79999999999973089997789999986222999906689999999999998210024569999999997435999678
Q 002658           57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM  136 (896)
Q Consensus        57 T~k~A~~eLD~ia~~L~pd~Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d~i~P~LpkIIs~IirrLkDpDs~V  136 (896)
                      .+++|...|+.++..++.+.++.+++.+.+...+.+|..|++++++||.+++++.+.+.||++.++++|+..|.|+++.|
T Consensus       373 ~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~V  452 (888)
T d1qbkb_         373 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALV  452 (888)
T ss_dssp             SHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHH
T ss_conf             99999998766765129999999999988751220568999999986435555787742120355679998426998999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             99999999999999731666687033766699999998239986999999999999981499992248999999999712
Q 002658          137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS  216 (896)
Q Consensus       137 R~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~eqnk~VQ~gAAsALAkIIE~a~d~~~~yL~~LiPRLlkLLk  216 (896)
                      |.+++|++|+++.++....   ...++..+++.|+..+.+.++.||.+||.||..++|.+.....+|++.+++.|.++++
T Consensus       453 r~~a~~~l~~~~~~~~~~~---~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~  529 (888)
T d1qbkb_         453 RSITCWTLSRYAHWVVSQP---PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS  529 (888)
T ss_dssp             HHHHHHHHHHTHHHHHSSC---HHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999866541---5655455589999884289878999899999999987553113579999999999986


Q ss_pred             CCCHHHHHHHHHHHHHHHH-CCC-C-CCCCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             9844649999999999984-022-2-722289999999996479--999999999999999998623679953989999
Q 002658          217 NQNFMAKASLLPVVGSLSQ-VGA-I-APQSLEPLLQSIHECLGS--TDWATRKAAADALSALALHSSNLVIDGATSTLT  290 (896)
Q Consensus       217 sps~kaK~alLsaIgSLa~-vga-~-~~pyld~lLp~L~e~Lss--~DW~vRKaAaEaLgsLA~avge~L~Py~~siI~  290 (896)
                      ....+.+..+++++++++. ++. . .++|++.+++.+.+....  ++-..+..+.++|+.++...++.+.||...++.
T Consensus       530 ~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~  608 (888)
T d1qbkb_         530 KYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ  608 (888)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             0037799999999999998623101336799999999999997512106889999999999999867877656999999

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.2e-14  Score=114.38  Aligned_cols=263  Identities=10%  Similarity=0.079  Sum_probs=196.6

Q ss_pred             HHHHHHHCC--CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHCC-------
Q ss_conf             999999707--99257999999999997308999778999998622--2999906689999999999998210-------
Q 002658           44 KILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYES--SNDPKPAVKKESVRLLALVCELHSE-------  112 (896)
Q Consensus        44 rll~~L~KL--sDRDT~k~A~~eLD~ia~~L~pd~Lp~lLs~L~es--~ss~ks~vRKeAIlLLG~iAegh~d-------  112 (896)
                      ++.++|..+  +|.+.++.|-+.|.++..+    ..+.|+.+|.+-  ..+.+..+|..|+.+|++....++.       
T Consensus         2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~----~~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~   77 (876)
T d1qgra_           2 ELITILEKTVSPDRLELEAAQKFLERAAVE----NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ   77 (876)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             789999988592989999999999999860----7157999999998448999999999999999875305620015553


Q ss_pred             ----CC-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC--CHHHHHHH
Q ss_conf             ----02-456999999999743599967899999999999999731666687033766699999998239--98699999
Q 002658          113 ----LT-STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ--NKGVQSGA  185 (896)
Q Consensus       113 ----~i-~P~LpkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~eq--nk~VQ~gA  185 (896)
                          .+ ......|...+++.|.++++. |...+.+++.++.+-..      ...|+++++-|++.+.++  +..++.++
T Consensus        78 ~~~~~i~~~~k~~ik~~ll~~l~~~~~~-~~~~a~~i~~i~~~~~p------~~~Wpeli~~L~~~l~~~~~~~~~~~~~  150 (876)
T d1qgra_          78 QRWLAIDANARREVKNYVLHTLGTETYR-PSSASQCVAGIACAEIP------VNQWPELIPQLVANVTNPNSTEHMKEST  150 (876)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHTTTCCSS-SCHHHHHHHHHHHHHGG------GTCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             0333599999999999999986697088-99999999999998777------3463899999999865999968999999


Q ss_pred             HHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHCC-C--CCCCCHHHHHHHHHHHHCCCC
Q ss_conf             999999998149-999224899999999971298--4464999999999998402-2--272228999999999647999
Q 002658          186 AMCMAKMVECAS-DPPVVAFQKLCARICKLLSNQ--NFMAKASLLPVVGSLSQVG-A--IAPQSLEPLLQSIHECLGSTD  259 (896)
Q Consensus       186 AsALAkIIE~a~-d~~~~yL~~LiPRLlkLLksp--s~kaK~alLsaIgSLa~vg-a--~~~pyld~lLp~L~e~Lss~D  259 (896)
                      ..||..+|+... +....+++.+++.++..+.+.  +..++..++.++....... .  ........+++.+...+.+++
T Consensus       151 l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~  230 (876)
T d1qgra_         151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD  230 (876)
T ss_dssp             HHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999877788778889999999999871757457999999999987888731012577899999999999825998


Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9999999999999998623679953989999-998621198723489999999999984058
Q 002658          260 WATRKAAADALSALALHSSNLVIDGATSTLT-VLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (896)
Q Consensus       260 W~vRKaAaEaLgsLA~avge~L~Py~~siI~-aLE~~RfDKvKpVRDaa~eALelWK~I~~~  320 (896)
                      +.+|+.++++|..++...++.+.+|+...+. .+.....+...   +.+..++++|..++..
T Consensus       231 ~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~  289 (876)
T d1qgra_         231 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID---EVALQGIEFWSNVCDE  289 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHH
T ss_conf             8999999999999999969998887887999999987345338---9999999999998888

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.6e-15  Score=122.12  Aligned_cols=260  Identities=12%  Similarity=0.090  Sum_probs=157.5

Q ss_pred             HHHHHHHHHHCC-CCHH-HHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC-CHH
Q ss_conf             999999999707-9925-7999999999997308-99977899999862229999066899999999999982100-245
Q 002658           41 MKQKILTSLSKL-ADRD-THQIAIEDLEKTIQTL-SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-TST  116 (896)
Q Consensus        41 Lk~rll~~L~KL-sDRD-T~k~A~~eLD~ia~~L-~pd~Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d~-i~P  116 (896)
                      .+..++..|.++ .|.| ....+++.|-.++..+ +++....+++.+..-..++++.+|..++.+|+.++..+... +. 
T Consensus        46 ~~~~lip~l~~~~~~~~ev~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~-  124 (588)
T d1b3ua_          46 TRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLE-  124 (588)
T ss_dssp             HHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHH-
T ss_conf             5999999999986586899999999999999874874689999999999806998899999999999999867988899-


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             69999999997435999678999999999999997316666870337666999999982399869999999999999814
Q 002658          117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA  196 (896)
Q Consensus       117 ~LpkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~eqnk~VQ~gAAsALAkIIE~a  196 (896)
                        ..+++.+.+...+....+|.+++..++.+....   .    ......+++.+.+.+.++++.|...|+.++..+++..
T Consensus       125 --~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~---~----~~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~  195 (588)
T d1b3ua_         125 --AHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRV---S----SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL  195 (588)
T ss_dssp             --HTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTS---C----HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS
T ss_pred             --HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             --999999999864631479999999999999986---1----8999999999999851699899999999999899871


Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99992248999999999712984464999999999998402227222899999999964799999999999999999986
Q 002658          197 SDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALH  276 (896)
Q Consensus       197 ~d~~~~yL~~LiPRLlkLLksps~kaK~alLsaIgSLa~vga~~~pyld~lLp~L~e~Lss~DW~vRKaAaEaLgsLA~a  276 (896)
                      +..  .....|+|.+..+++++...+|..++.+++.++..- ....+...++|.+..++.+.+|.+|..++++|+.++..
T Consensus       196 ~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~-~~~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~  272 (588)
T d1b3ua_         196 ELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL-PQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKA  272 (588)
T ss_dssp             CHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS-CHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHH
T ss_pred             CHH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             578--779999999999744885246789998887763058-88999999999999720235688889999857888877


Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             236799539899999986211987234899999999999
Q 002658          277 SSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWK  315 (896)
Q Consensus       277 vge~L~Py~~siI~aLE~~RfDKvKpVRDaa~eALelWK  315 (896)
                      .+..+  ....++..+...-.|....||..+..++..+-
T Consensus       273 ~~~~~--~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~  309 (588)
T d1b3ua_         273 VGPEI--TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC  309 (588)
T ss_dssp             HCHHH--HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             66534--34441689999872133577799998799999

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.9e-14  Score=111.34  Aligned_cols=250  Identities=14%  Similarity=0.099  Sum_probs=172.1

Q ss_pred             HHCC--CCHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             9707--992579999999999973089997-7899999862229999066899999999999982100245699999999
Q 002658           49 LSKL--ADRDTHQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHI  125 (896)
Q Consensus        49 L~KL--sDRDT~k~A~~eLD~ia~~L~pd~-Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d~i~P~LpkIIs~I  125 (896)
                      +..+  .|-..+-.|+..|..++..++++. ...++++|.+...+ +..++.+....|+.+++..+  -..|...+++.+
T Consensus        16 ~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~-~~ev~~~~~~~l~~~~~~~~--~~~~~~~ll~~l   92 (588)
T d1b3ua_          16 IDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYD-EDEVLLALAEQLGTFTTLVG--GPEYVHCLLPPL   92 (588)
T ss_dssp             HHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCC-CHHHHHHHHHHHTTCSGGGT--SGGGGGGGHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHH
T ss_conf             998669998999999999999999849174599999999998658-68999999999999998748--746899999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             97435999678999999999999997316666870337666999999982-39986999999999999981499992248
Q 002658          126 VKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDPPVVAF  204 (896)
Q Consensus       126 irrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~-eqnk~VQ~gAAsALAkIIE~a~d~~~~yL  204 (896)
                      ...+.+.++.||.+++.+++.++..+   .    .......+.|++..|. +....++..|+..+..+...   ......
T Consensus        93 ~~l~~~~~~~Vr~~a~~~l~~i~~~~---~----~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~---~~~~~~  162 (588)
T d1b3ua_          93 ESLATVEETVVRDKAVESLRAISHEH---S----PSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPR---VSSAVK  162 (588)
T ss_dssp             HHHTTSSCHHHHHHHHHHHHHHHTTS---C----HHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTT---SCHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHC---C----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHH
T ss_conf             99806998899999999999999867---9----8889999999999986463147999999999999998---618999


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             999999999712984464999999999998402227222-8999999999647999999999999999999862367995
Q 002658          205 QKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQS-LEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVID  283 (896)
Q Consensus       205 ~~LiPRLlkLLksps~kaK~alLsaIgSLa~vga~~~py-ld~lLp~L~e~Lss~DW~vRKaAaEaLgsLA~avge~L~P  283 (896)
                      ..+.+.+..++++++..+|..+..+++.++..-  ...+ -..++|.+...+.+++|.+|..|+++|+.++...++.  .
T Consensus       163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~--~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~--~  238 (588)
T d1b3ua_         163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL--ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D  238 (588)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS--CHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHH--H
T ss_conf             999999999851699899999999999899871--578779999999999744885246789998887763058889--9


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             39899999986211987234899999999999
Q 002658          284 GATSTLTVLEACRFDKIKPVRDSMNEALQLWK  315 (896)
Q Consensus       284 y~~siI~aLE~~RfDKvKpVRDaa~eALelWK  315 (896)
                      +...++..+...-.|+...||..+.+++.-..
T Consensus       239 ~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~  270 (588)
T d1b3ua_         239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQ  270 (588)
T ss_dssp             HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999997202356888899998578888

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.3e-13  Score=108.91  Aligned_cols=276  Identities=14%  Similarity=0.127  Sum_probs=180.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHC-
Q ss_conf             769999999999997079925799999999999730-89997789999986222--99990668999999999999821-
Q 002658           36 LAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQT-LSQESLPMLLNCLYESS--NDPKPAVKKESVRLLALVCELHS-  111 (896)
Q Consensus        36 ~~~~~Lk~rll~~L~KLsDRDT~k~A~~eLD~ia~~-L~pd~Lp~lLs~L~es~--ss~ks~vRKeAIlLLG~iAegh~-  111 (896)
                      ..-..+|++++++|.. .+ ..++.++..+-.++.. ++.+..|.+++.|.+..  ++....+|..++.+|+.+++... 
T Consensus        86 ~~k~~ik~~ll~~l~~-~~-~~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~  163 (876)
T d1qgra_          86 NARREVKNYVLHTLGT-ET-YRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP  163 (876)
T ss_dssp             HHHHHHHHHHHHHTTT-CC-SSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHHHHCC-CC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCH
T ss_conf             9999999999998669-70-889999999999999877734638999999998659999689999999999999987778


Q ss_pred             CCCHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             0024569999999997435999--67899999999999999731666687033766699999998239986999999999
Q 002658          112 ELTSTHVTKIISHIVKRLKDSD--SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCM  189 (896)
Q Consensus       112 d~i~P~LpkIIs~IirrLkDpD--s~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~eqnk~VQ~gAAsAL  189 (896)
                      +.+.++++.|++.+++.|.+.+  ..||.++..++..+...+....  ........+++.|...+..+++.++..++.||
T Consensus       164 ~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l  241 (876)
T d1qgra_         164 EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF--DKESERHFIMQVVCEATQCPDTRVRVAALQNL  241 (876)
T ss_dssp             HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH--TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             8778889999999999871757457999999999987888731012--57789999999999982599889999999999


Q ss_pred             HHHHHHCCCCCCHHHHH-HHHHHHHHHCCCCHHHHHHHH-----------------------------------------
Q ss_conf             99998149999224899-999999971298446499999-----------------------------------------
Q 002658          190 AKMVECASDPPVVAFQK-LCARICKLLSNQNFMAKASLL-----------------------------------------  227 (896)
Q Consensus       190 AkIIE~a~d~~~~yL~~-LiPRLlkLLksps~kaK~alL-----------------------------------------  227 (896)
                      ..+++..++...+|+.. +.+.+...+++.....+..++                                         
T Consensus       242 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (876)
T d1qgra_         242 VKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY  321 (876)
T ss_dssp             HHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999969998887887999999987345338999999999999888899999873378875316999999999988998


Q ss_pred             ----------------------------HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC-
Q ss_conf             ----------------------------999999840222722289999999996479999999999999999998623-
Q 002658          228 ----------------------------PVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-  278 (896)
Q Consensus       228 ----------------------------saIgSLa~vga~~~pyld~lLp~L~e~Lss~DW~vRKaAaEaLgsLA~avg-  278 (896)
                                                  .++..++..  .....++.+++.+.+.+.+.+|..|.+++-+++.++.... 
T Consensus       322 l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~  399 (876)
T d1qgra_         322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC--CEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP  399 (876)
T ss_dssp             HHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHH--HGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH
T ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8776578887430023543313999999999999987--36665355678999860251378889999988766643229


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             679953989999998621198723489999999999984
Q 002658          279 NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKI  317 (896)
Q Consensus       279 e~L~Py~~siI~aLE~~RfDKvKpVRDaa~eALelWK~I  317 (896)
                      ..+.++...++..+...-.|....||..+..++...-..
T Consensus       400 ~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  438 (876)
T d1qgra_         400 SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             889899999999999861578608999999889999998

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.8e-13  Score=108.02  Aligned_cols=264  Identities=9%  Similarity=0.064  Sum_probs=197.3

Q ss_pred             HHHHHHCC--CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC----------
Q ss_conf             99999707--992579999999999973089997789999986222999906689999999999998210----------
Q 002658           45 ILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSE----------  112 (896)
Q Consensus        45 ll~~L~KL--sDRDT~k~A~~eLD~ia~~L~pd~Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d----------  112 (896)
                      ++++|..+  .|.+.++.|.+.|+.+..+ ++..+...|..+.. ..+.+..+|..|..+|++....+..          
T Consensus         2 l~~il~~~~s~d~~~r~~A~~~L~~~~~~-~~~~~~~~l~~il~-~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~   79 (458)
T d1ibrb_           2 LITILEKTVSPDRLELEAAQKFLERAAVE-NLPTFLVELSRVLA-NPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW   79 (458)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             89899988594999999999999998752-83589999999984-48999899999999999886326711116776411


Q ss_pred             --CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC--CCHHHHHHHHHH
Q ss_conf             --0245699999999974359996789999999999999973166668703376669999999823--998699999999
Q 002658          113 --LTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME--QNKGVQSGAAMC  188 (896)
Q Consensus       113 --~i~P~LpkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~e--qnk~VQ~gAAsA  188 (896)
                        ........|...++..+.++++.+|.+ +.+++.++.....      ...|+.+++.|++.+.+  .+..+..+++.+
T Consensus        80 ~~l~~~~~~~i~~~ll~~~~~~~~~~~~~-~~~~~~i~~~~~~------~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~  152 (458)
T d1ibrb_          80 LAIDANARREVKNYVLQTLGTETYRPSSA-SQCVAGIACAEIP------VNQWPELIPQLVANVTNPNSTEHMKESTLEA  152 (458)
T ss_dssp             HTSCHHHHHHHHHHHHHHTTCCCSSSCSH-HHHHHHHHHHHGG------GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHHHHHCC------CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             14999999999999986147982899999-9999999998678------0127510578999988203217788889988


Q ss_pred             HHHHHHHCC-CCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf             999998149-999224899999999971298--4464999999999998402---2272228999999999647999999
Q 002658          189 MAKMVECAS-DPPVVAFQKLCARICKLLSNQ--NFMAKASLLPVVGSLSQVG---AIAPQSLEPLLQSIHECLGSTDWAT  262 (896)
Q Consensus       189 LAkIIE~a~-d~~~~yL~~LiPRLlkLLksp--s~kaK~alLsaIgSLa~vg---a~~~pyld~lLp~L~e~Lss~DW~v  262 (896)
                      |..+++... .....+++.+++.+...+.+.  +..++..++.+++.++...   .........+++.+...+.++++.+
T Consensus       153 l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  232 (458)
T d1ibrb_         153 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV  232 (458)
T ss_dssp             HHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             88987631410002338899999999861545679999999999999988613245667777776766887725998999


Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9999999999998623679953989999-998621198723489999999999984058
Q 002658          263 RKAAADALSALALHSSNLVIDGATSTLT-VLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (896)
Q Consensus       263 RKaAaEaLgsLA~avge~L~Py~~siI~-aLE~~RfDKvKpVRDaa~eALelWK~I~~~  320 (896)
                      |+.++++|+.++...++.+.||+..++. ++.....+..+   +....++++|..++..
T Consensus       233 ~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~a~~~l~~i~~~  288 (458)
T d1ibrb_         233 RVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID---EVALQGIEFWSNVCDE  288 (458)
T ss_dssp             HHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHH
T ss_conf             9999999999998719999988877899999998435459---9999999999998998

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.9e-12  Score=96.34  Aligned_cols=220  Identities=12%  Similarity=0.110  Sum_probs=109.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf             9906689999999999998210-024569999999997435999--6789999999999999973166668703376669
Q 002658           91 PKPAVKKESVRLLALVCELHSE-LTSTHVTKIISHIVKRLKDSD--SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFV  167 (896)
Q Consensus        91 ~ks~vRKeAIlLLG~iAegh~d-~i~P~LpkIIs~IirrLkDpD--s~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lL  167 (896)
                      ..+..|+.++.+++.+++.... ...+++..|++.++..|.+.+  ..||.++..+++.+........  ......+.++
T Consensus       141 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~--~~~~~~~~~~  218 (458)
T d1ibrb_         141 STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF--DKESERHFIM  218 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHH--TSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_conf             21778888998888987631410002338899999999861545679999999999999988613245--6677777767


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHHCCCCHHHHHHHHH------------------
Q ss_conf             99999982399869999999999999814999922489999-99999712984464999999------------------
Q 002658          168 KPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLC-ARICKLLSNQNFMAKASLLP------------------  228 (896)
Q Consensus       168 kPLleaL~eqnk~VQ~gAAsALAkIIE~a~d~~~~yL~~Li-PRLlkLLksps~kaK~alLs------------------  228 (896)
                      +.|...+.+.++.+...++.||..+++..+....+|+..++ +-+...+++.....+..++.                  
T Consensus       219 ~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~  298 (458)
T d1ibrb_         219 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE  298 (458)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             66887725998999999999999999871999998887789999999843545999999999999989988999985036


Q ss_pred             ---------------------------------------------------HHHHHHHCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             ---------------------------------------------------99999840222722289999999996479
Q 002658          229 ---------------------------------------------------VVGSLSQVGAIAPQSLEPLLQSIHECLGS  257 (896)
Q Consensus       229 ---------------------------------------------------aIgSLa~vga~~~pyld~lLp~L~e~Lss  257 (896)
                                                                         ++..++...  ....++.+++.+.+.+.+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~l~~~i~~~l~s  376 (458)
T d1ibrb_         299 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC--EDDIVPHVLPFIKEHIKN  376 (458)
T ss_dssp             TTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHCC
T ss_conf             787641899999999998899872667764000102101122339999999999998755--175566789999998569


Q ss_pred             CCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             999999999999999998623-679953989999998621198723489999999999
Q 002658          258 TDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLW  314 (896)
Q Consensus       258 ~DW~vRKaAaEaLgsLA~avg-e~L~Py~~siI~aLE~~RfDKvKpVRDaa~eALelW  314 (896)
                      ++|..|.+|+.+|+.|+.... +.+.||+..++..+..+-.|....||.+|..++.-+
T Consensus       377 ~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i  434 (458)
T d1ibrb_         377 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI  434 (458)
T ss_dssp             SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             9989999999999999975477678988999999999884899899999999999999

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=1.2e-09  Score=81.53  Aligned_cols=267  Identities=9%  Similarity=0.041  Sum_probs=184.5

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC------C-H
Q ss_conf             99999997079925799999999999730899977899999862229999066899999999999982100------2-4
Q 002658           43 QKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL------T-S  115 (896)
Q Consensus        43 ~rll~~L~KLsDRDT~k~A~~eLD~ia~~L~pd~Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d~------i-~  115 (896)
                      ..+.++|..+-|.++++.|-+.|.++-.  .| .+..+|-.+... .+....+|..|+..|++.+..|+..      + .
T Consensus         5 ~~l~~ll~~s~~~~~~k~Ae~~L~~~~~--~p-~f~~~L~~i~~~-~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~   80 (959)
T d1wa5c_           5 ETVAKFLAESVIASTAKTSERNLRQLET--QD-GFGLTLLHVIAS-TNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPA   80 (959)
T ss_dssp             HHHHHHHHHTTSGGGHHHHHHHHHHHHT--ST-THHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf             9999999878996899999999999770--99-899999999835-8999999999999999999985564344579999


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             56999999999743599967899999999999999731666687033766699999998239986999999999999981
Q 002658          116 THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC  195 (896)
Q Consensus       116 P~LpkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~eqnk~VQ~gAAsALAkIIE~  195 (896)
                      .-...|...++..|.+++..||...+.+++.++.+-   .+    ..||.+++-|++.+..++...+.++..+|..+++.
T Consensus        81 e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d---~p----~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~  153 (959)
T d1wa5c_          81 NNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSD---FP----DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKR  153 (959)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH---ST----TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH---CC----CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             999999999999983796999999999999999876---84----02579999999985799999999999999999999


Q ss_pred             CCCCCC---------HHHHHHHHHHHHHHCC--------CCHHHH-HHHHHHH-------HHHHHCC--CCCCCCHHHHH
Q ss_conf             499992---------2489999999997129--------844649-9999999-------9998402--22722289999
Q 002658          196 ASDPPV---------VAFQKLCARICKLLSN--------QNFMAK-ASLLPVV-------GSLSQVG--AIAPQSLEPLL  248 (896)
Q Consensus       196 a~d~~~---------~yL~~LiPRLlkLLks--------ps~kaK-~alLsaI-------gSLa~vg--a~~~pyld~lL  248 (896)
                      ......         ..++.+.+.+..++..        ...... ..++..+       .++....  ..+.+++..++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (959)
T d1wa5c_         154 WRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGM  233 (959)
T ss_dssp             GTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             87651325477679999999999999999999999763524199999999999999999999775204699999999999


Q ss_pred             HHHHHHHCCC---------------CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HH-CCCCHHHHHHHHHHH
Q ss_conf             9999964799---------------999999999999999986236799539899999986-21-198723489999999
Q 002658          249 QSIHECLGST---------------DWATRKAAADALSALALHSSNLVIDGATSTLTVLEA-CR-FDKIKPVRDSMNEAL  311 (896)
Q Consensus       249 p~L~e~Lss~---------------DW~vRKaAaEaLgsLA~avge~L~Py~~siI~aLE~-~R-fDKvKpVRDaa~eAL  311 (896)
                      ..+..++...               .+.+|+..+.++..+....++.+.||...++..+.. +. ......-...+..++
T Consensus       234 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  313 (959)
T d1wa5c_         234 GIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSL  313 (959)
T ss_dssp             HHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             99999980055313580145550289999999999999999985898999999999999999998833555289999999


Q ss_pred             HHHHHHCCC
Q ss_conf             999984058
Q 002658          312 QLWKKIAGK  320 (896)
Q Consensus       312 elWK~I~~~  320 (896)
                      ++|..+...
T Consensus       314 ~~l~~~~~~  322 (959)
T d1wa5c_         314 SFLTAVTRI  322 (959)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHHHH
T ss_conf             999999851

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=1.4e-09  Score=81.10  Aligned_cols=281  Identities=11%  Similarity=0.066  Sum_probs=151.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC--
Q ss_conf             676999999999999707992579999999999973089997789999986222999906689999999999998210--
Q 002658           35 HLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSE--  112 (896)
Q Consensus        35 ~~~~~~Lk~rll~~L~KLsDRDT~k~A~~eLD~ia~~L~pd~Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d--  112 (896)
                      .+.-..+|+.++++|.. +++..+...+..+-.++..-.|+..|.+++.|.+..++.++..+..++.+|..+++.+..  
T Consensus        80 ~e~k~~Ik~~ll~~l~~-~~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~  158 (959)
T d1wa5c_          80 ANNVELIKKEIVPLMIS-LPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLF  158 (959)
T ss_dssp             HHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSC
T ss_pred             HHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999837-96999999999999999876840257999999998579999999999999999999987651


Q ss_pred             --------------CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC-------C-CCCCCCHHHHHHHHHH
Q ss_conf             --------------02456999999999743599967899999999999999731-------6-6668703376669999
Q 002658          113 --------------LTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLN-------G-KEENNGTVVGLFVKPL  170 (896)
Q Consensus       113 --------------~i~P~LpkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~-------~-~~~~~~~~~~~lLkPL  170 (896)
                                    .+.+.+..++..+...+....  ...+....+......+.+       . ..+.-.+.+..++..+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (959)
T d1wa5c_         159 RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANE--NNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIF  236 (959)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             32547767999999999999999999999976352--4199999999999999999999775204699999999999999


Q ss_pred             HHHHHCCC---------------HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC----CCH-HHHHHHHHHH
Q ss_conf             99982399---------------869999999999999814999922489999999997129----844-6499999999
Q 002658          171 FEAMMEQN---------------KGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSN----QNF-MAKASLLPVV  230 (896)
Q Consensus       171 leaL~eqn---------------k~VQ~gAAsALAkIIE~a~d~~~~yL~~LiPRLlkLLks----ps~-kaK~alLsaI  230 (896)
                      ...+....               +.++...+.++..+++..++...++++.++..+..++..    ..+ .....++..+
T Consensus       237 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l  316 (959)
T d1wa5c_         237 HKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFL  316 (959)
T ss_dssp             HHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             99980055313580145550289999999999999999985898999999999999999998833555289999999999


Q ss_pred             HHHHHCC---CCC--CCCHHHHHHHH-HHHHC-----------------------CCCHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             9998402---227--22289999999-99647-----------------------9999999999999999998623679
Q 002658          231 GSLSQVG---AIA--PQSLEPLLQSI-HECLG-----------------------STDWATRKAAADALSALALHSSNLV  281 (896)
Q Consensus       231 gSLa~vg---a~~--~pyld~lLp~L-~e~Ls-----------------------s~DW~vRKaAaEaLgsLA~avge~L  281 (896)
                      ..++...   ..+  .+++..++..+ ..++.                       ++.+..|.++.+.+..++...++.+
T Consensus       317 ~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~  396 (959)
T d1wa5c_         317 TAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV  396 (959)
T ss_dssp             HHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             99985178998872046788899999998856787789877506387778774000002177899999999997534112


Q ss_pred             HHHHHH-HHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHC
Q ss_conf             953989-99999862119--87234899999999999840
Q 002658          282 IDGATS-TLTVLEACRFD--KIKPVRDSMNEALQLWKKIA  318 (896)
Q Consensus       282 ~Py~~s-iI~aLE~~RfD--KvKpVRDaa~eALelWK~I~  318 (896)
                      .+..-. +...+.....+  .....|++++.++.......
T Consensus       397 ~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~  436 (959)
T d1wa5c_         397 TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAING  436 (959)
T ss_dssp             HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSS
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             6889999999997514687621677889999999998631

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=7.8e-10  Score=82.93  Aligned_cols=259  Identities=10%  Similarity=0.079  Sum_probs=171.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCC-CC--------CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHH-HH
Q ss_conf             0799257999999999997308-99--------97789999986222999906689999999999998210024569-99
Q 002658           51 KLADRDTHQIAIEDLEKTIQTL-SQ--------ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHV-TK  120 (896)
Q Consensus        51 KLsDRDT~k~A~~eLD~ia~~L-~p--------d~Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d~i~P~L-pk  120 (896)
                      ...|.+.+..|+..+.++...- .+        ..++.++..+.   .+.+..++.++..+|++++.+..+...... ..
T Consensus        86 ~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~---~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g  162 (503)
T d1wa5b_          86 NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR---ENQPEMLQLEAAWALTNIASGTSAQTKVVVDAD  162 (503)
T ss_dssp             SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTS---TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHC---CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
T ss_conf             49999999999999999974078843999998798499999871---799999999999999999749888779999678


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC-C
Q ss_conf             999999743599967899999999999999731666687033766699999998239986999999999999981499-9
Q 002658          121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD-P  199 (896)
Q Consensus       121 IIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~eqnk~VQ~gAAsALAkIIE~a~d-~  199 (896)
                      +++.++..|.+++..|+..|+++++.|+........   .-.-..++++|+..+.+.+..++..++.+|..++..... .
T Consensus       163 ~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~---~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~  239 (503)
T d1wa5b_         163 AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD---YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP  239 (503)
T ss_dssp             CHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHH---HHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
T ss_conf             747899985599715899999999998541189999---88741355630120456888999999999999846874204


Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             92248999999999712984464999999999998402-2272228-999999999647999999999999999999862
Q 002658          200 PVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSL-EPLLQSIHECLGSTDWATRKAAADALSALALHS  277 (896)
Q Consensus       200 ~~~yL~~LiPRLlkLLksps~kaK~alLsaIgSLa~vg-a~~~pyl-d~lLp~L~e~Lss~DW~vRKaAaEaLgsLA~av  277 (896)
                      .......++|.|..++.+.+..++..++.++..++... ......+ ..+++.|..++.+++..++..++.+|+.|+...
T Consensus       240 ~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~  319 (503)
T d1wa5b_         240 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN  319 (503)
T ss_dssp             CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             79999999999998723563899999999987532277111100112233111011025786364456777777787788


Q ss_pred             CHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             3679953-9899999986211987234899999999999840
Q 002658          278 SNLVIDG-ATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA  318 (896)
Q Consensus       278 ge~L~Py-~~siI~aLE~~RfDKvKpVRDaa~eALelWK~I~  318 (896)
                      ++...-. ...++.++..+.....+.+|..+   +-....+.
T Consensus       320 ~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~---~~~l~nl~  358 (503)
T d1wa5b_         320 DLQTQVVINAGVLPALRLLLSSPKENIKKEA---CWTISNIT  358 (503)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH---HHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHCCCCHHHHHHH---HHHHHHHH
T ss_conf             8878763123409999999639978889999---87788886

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=7.5e-09  Score=76.12  Aligned_cols=250  Identities=13%  Similarity=0.151  Sum_probs=166.3

Q ss_pred             CCHHHHHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHH
Q ss_conf             992579999999999973089--------9977899999862229999066899999999999982100245-6999999
Q 002658           53 ADRDTHQIAIEDLEKTIQTLS--------QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST-HVTKIIS  123 (896)
Q Consensus        53 sDRDT~k~A~~eLD~ia~~L~--------pd~Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d~i~P-~LpkIIs  123 (896)
                      .+.+.+..|+..|-.++..-+        ...++.++..+.    +.+..++..++.+|++++....+.-.- .-..+++
T Consensus       132 ~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~----s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~  207 (503)
T d1wa5b_         132 QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY----TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME  207 (503)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH----HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999999997498887799996787478999855----99715899999999998541189999887413556


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             99974359996789999999999999973166668703376669999999823998699999999999998149999224
Q 002658          124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVA  203 (896)
Q Consensus       124 ~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~eqnk~VQ~gAAsALAkIIE~a~d~~~~y  203 (896)
                      .+++.+.+.++.++..++|++..++..... .  ........+++.|...+...++.++..++.||..+++...+....+
T Consensus       208 ~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~-~--~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~  284 (503)
T d1wa5b_         208 PILGLFNSNKPSLIRTATWTLSNLCRGKKP-Q--PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAV  284 (503)
T ss_dssp             HHHHGGGSCCHHHHHHHHHHHHHHHCCSSS-C--CCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CCHHHCCCCCHHHHHHHHHHHHHHHCCCCC-C--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             301204568889999999999998468742-0--4799999999999987235638999999999875322771111001


Q ss_pred             HH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             89-99999999712984464999999999998402-2272228-999999999647999999999999999999862367
Q 002658          204 FQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSL-EPLLQSIHECLGSTDWATRKAAADALSALALHSSNL  280 (896)
Q Consensus       204 L~-~LiPRLlkLLksps~kaK~alLsaIgSLa~vg-a~~~pyl-d~lLp~L~e~Lss~DW~vRKaAaEaLgsLA~avge~  280 (896)
                      ++ .++++++.++.+++..++..++.+++.++... ......+ ..+++.|..++.+.+..+|+.++-+|+.++..-++.
T Consensus       285 ~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~  364 (503)
T d1wa5b_         285 IDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQ  364 (503)
T ss_dssp             HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHH
T ss_conf             12233111011025786364456777777787788887876312340999999963997888999987788886146988


Q ss_pred             HHHH-----HHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             9953-----98999999862119872348999999999
Q 002658          281 VIDG-----ATSTLTVLEACRFDKIKPVRDSMNEALQL  313 (896)
Q Consensus       281 L~Py-----~~siI~aLE~~RfDKvKpVRDaa~eALel  313 (896)
                      ....     ++.++..+...    ...|+..+..++..
T Consensus       365 ~~~i~~~~~l~~li~~l~~~----~~~v~~~a~~~l~n  398 (503)
T d1wa5b_         365 IQAVIDANLIPPLVKLLEVA----EYKTKKEACWAISN  398 (503)
T ss_dssp             HHHHHHTTCHHHHHHHHHHS----CHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHCCCC----CHHHHHHHHHHHHH
T ss_conf             89999714652367760268----73689999999999

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=1.1e-08  Score=75.04  Aligned_cols=260  Identities=13%  Similarity=0.119  Sum_probs=164.2

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHH-HHH
Q ss_conf             707992579999999999973089---------9977899999862229999066899999999999982100245-699
Q 002658           50 SKLADRDTHQIAIEDLEKTIQTLS---------QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST-HVT  119 (896)
Q Consensus        50 ~KLsDRDT~k~A~~eLD~ia~~L~---------pd~Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d~i~P-~Lp  119 (896)
                      -+.+|.+.+..|+..|.++...-.         ...++.++.+|.   .+.++.+|..+..+|.+++....+...- .-.
T Consensus        22 l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~   98 (434)
T d1q1sc_          22 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG---KTDCSPIQFESAWALTNIASGTSEQTKAVVDG   98 (434)
T ss_dssp             HTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTT---CGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHC---CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             769899999999999999863799832999998889999999874---69988999999999999863985510476644


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHH
Q ss_conf             99999997435999678999999999999997316666870337666999999982399-----8699999999999998
Q 002658          120 KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQN-----KGVQSGAAMCMAKMVE  194 (896)
Q Consensus       120 kIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~eqn-----k~VQ~gAAsALAkIIE  194 (896)
                      .+++.++..|.++++.++..|+++++.++..-.....   .-.-...+.+|+..+...+     ......++.++..++.
T Consensus        99 ~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~---~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~  175 (434)
T d1q1sc_          99 GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD---LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  175 (434)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH---HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHH---HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             6315666403568799999999999988500168999---9998630058999987223210018999999999988864


Q ss_pred             HCCC-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CC-CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             1499-992248999999999712984464999999999998402-22-72228999999999647999999999999999
Q 002658          195 CASD-PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AI-APQSLEPLLQSIHECLGSTDWATRKAAADALS  271 (896)
Q Consensus       195 ~a~d-~~~~yL~~LiPRLlkLLksps~kaK~alLsaIgSLa~vg-a~-~~pyld~lLp~L~e~Lss~DW~vRKaAaEaLg  271 (896)
                      .... ....+...++|.|..++++++..++..++.++..++... .. ..-+...+++.|.+++.+++..++..++.+|+
T Consensus       176 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~  255 (434)
T d1q1sc_         176 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG  255 (434)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHCHHHHHH
T ss_conf             26422114436569999999985244201256776640220123456777763154201000023430655402122135


Q ss_pred             HHHHHCCHHHHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             999862367995-39899999986211987234899999999999840
Q 002658          272 ALALHSSNLVID-GATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA  318 (896)
Q Consensus       272 sLA~avge~L~P-y~~siI~aLE~~RfDKvKpVRDaa~eALelWK~I~  318 (896)
                      .++....+.... ....++..+...-.+..+.||..   ++..+..+.
T Consensus       256 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~---a~~~L~~l~  300 (434)
T d1q1sc_         256 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE---ATWTMSNIT  300 (434)
T ss_dssp             HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH---HHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHH---HHHHHHHHC
T ss_conf             677666677899985256405777613641466688---887886520

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.6e-07  Score=67.04  Aligned_cols=246  Identities=11%  Similarity=-0.003  Sum_probs=113.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH-HHHHH
Q ss_conf             799257999999999997308--------999778999998622299990668999999999999821002456-99999
Q 002658           52 LADRDTHQIAIEDLEKTIQTL--------SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTH-VTKII  122 (896)
Q Consensus        52 LsDRDT~k~A~~eLD~ia~~L--------~pd~Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d~i~P~-LpkII  122 (896)
                      ..|...+..|+..|..++..-        .++.++.++..|..   ..+..+++.+..+|..++. +.+..... =...+
T Consensus        28 ~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~---~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i  103 (529)
T d1jdha_          28 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN---TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGI  103 (529)
T ss_dssp             CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHC-CCHHHHHHHHCCCH
T ss_conf             9999999999999999984557789998713399999999847---9999999999999999958-91669999987989


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             99997435999678999999999999997316666870337666999999982399869999999999999814999922
Q 002658          123 SHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVV  202 (896)
Q Consensus       123 s~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~eqnk~VQ~gAAsALAkIIE~a~d~~~~  202 (896)
                      +.+++.|+++++.|+..|+++++.++..-....   ..-.....+++|++.|.+.++.++..++.||..++....+.-..
T Consensus       104 ~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~---~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  180 (529)
T d1jdha_         104 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK---MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI  180 (529)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH---HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHH---HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999998579798999999999998651320113---67876588148999887057688888899998876300478888


Q ss_pred             HHH-HHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCH
Q ss_conf             489-9999999971298-44649999999999984022272228-99999999964799999999999999999986236
Q 002658          203 AFQ-KLCARICKLLSNQ-NFMAKASLLPVVGSLSQVGAIAPQSL-EPLLQSIHECLGSTDWATRKAAADALSALALHSSN  279 (896)
Q Consensus       203 yL~-~LiPRLlkLLksp-s~kaK~alLsaIgSLa~vga~~~pyl-d~lLp~L~e~Lss~DW~vRKaAaEaLgsLA~avge  279 (896)
                      ... ..++.|..++.+. ....+..+..++.-++.....-...+ ...++.|...+.+.+..++..++.+|..+......
T Consensus       181 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~  260 (529)
T d1jdha_         181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK  260 (529)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             87605636899999861048999999998751101332330456543334699986254015553015677750432110


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             799539899999986211987234899
Q 002658          280 LVIDGATSTLTVLEACRFDKIKPVRDS  306 (896)
Q Consensus       280 ~L~Py~~siI~aLE~~RfDKvKpVRDa  306 (896)
                      .+  ....++..+..........++..
T Consensus       261 ~~--~~~~~i~~Lv~ll~~~~~~~~~~  285 (529)
T d1jdha_         261 QE--GMEGLLGTLVQLLGSDDINVVTC  285 (529)
T ss_dssp             CS--CCHHHHHHHHHHTTCSCHHHHHH
T ss_pred             HH--HHHHCCHHHHHHCCCCCHHHHHH
T ss_conf             25--66401014454124542889999

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=1.4e-08  Score=74.15  Aligned_cols=196  Identities=14%  Similarity=0.080  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999974359996789999999999999973166668703376669999999823998699999999999998149
Q 002658          118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS  197 (896)
Q Consensus       118 LpkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~eqnk~VQ~gAAsALAkIIE~a~  197 (896)
                      ...+++.++..+.+.++.++..++++++.++..-....   ..-....+++.|++.+.+.++.++..|+.+|..++...+
T Consensus       186 ~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~---~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~  262 (434)
T d1q1sc_         186 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI---EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD  262 (434)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH---HHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHH---HHHHHCCCCHHCCCCCCCCHHHHHHCHHHHHHHHHHHHH
T ss_conf             65699999999852442012567766402201234567---777631542010000234306554021221356776666


Q ss_pred             CCCCHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             99922489-99999999712984464999999999998402-2272228-999999999647999999999999999999
Q 002658          198 DPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSL-EPLLQSIHECLGSTDWATRKAAADALSALA  274 (896)
Q Consensus       198 d~~~~yL~-~LiPRLlkLLksps~kaK~alLsaIgSLa~vg-a~~~pyl-d~lLp~L~e~Lss~DW~vRKaAaEaLgsLA  274 (896)
                      ......++ ..++.|.++|+++...++..++.+++.++... ....... ..+++.+...+.+.++.+|..|+.+|+.++
T Consensus       263 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~  342 (434)
T d1q1sc_         263 EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT  342 (434)
T ss_dssp             HHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             77899985256405777613641466688887886520045045777766546899998775158688999999999998


Q ss_pred             HHCC-HHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             8623-679953-98999999862119872348999999999998
Q 002658          275 LHSS-NLVIDG-ATSTLTVLEACRFDKIKPVRDSMNEALQLWKK  316 (896)
Q Consensus       275 ~avg-e~L~Py-~~siI~aLE~~RfDKvKpVRDaa~eALelWK~  316 (896)
                      .... +.+... ...++.+|...-..++..++..++.++.....
T Consensus       343 ~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~  386 (434)
T d1q1sc_         343 SGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  386 (434)
T ss_dssp             HHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             34999999999989769999998659998999999999999999

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.9e-07  Score=66.48  Aligned_cols=228  Identities=16%  Similarity=0.143  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999970799257999999999997308-------99977899999862229999066899999999999982100
Q 002658           41 MKQKILTSLSKLADRDTHQIAIEDLEKTIQTL-------SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL  113 (896)
Q Consensus        41 Lk~rll~~L~KLsDRDT~k~A~~eLD~ia~~L-------~pd~Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d~  113 (896)
                      +...++..|.+..|.+.++.|+..|-.+..+-       ....++.++.+|    .+.++.+++.++.+|++++......
T Consensus        60 ~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL----~~~~~~v~~~a~~aL~~l~~~~~~~  135 (529)
T d1jdha_          60 MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML----GSPVDSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHT----TCSCHHHHHHHHHHHHHHHHHCTTH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH----CCCCHHHHHHHHHHHHHHHCCCCHH
T ss_conf             999999998479999999999999999958916699999879899999985----7979899999999999865132011


Q ss_pred             C-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
Q ss_conf             2-4569999999997435999678999999999999997316666870337666999999982-3998699999999999
Q 002658          114 T-STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAK  191 (896)
Q Consensus       114 i-~P~LpkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~-eqnk~VQ~gAAsALAk  191 (896)
                      - .-.-...++.++..|+++++.++..++++++.++..-....   ....-...+++|+..|. .....++..++.+|..
T Consensus       136 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~  212 (529)
T d1jdha_         136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK---LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV  212 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH---HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3678765881489998870576888888999988763004788---8887605636899999861048999999998751


Q ss_pred             HHHHCCCCCCHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             99814999922489-99999999712984464999999999998402227222899999999964799999999999999
Q 002658          192 MVECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADAL  270 (896)
Q Consensus       192 IIE~a~d~~~~yL~-~LiPRLlkLLksps~kaK~alLsaIgSLa~vga~~~pyld~lLp~L~e~Lss~DW~vRKaAaEaL  270 (896)
                      +..+... .....+ ..++.|..++.+++...+..++.++..+.... .........++.|.+.+.+++..++..|+.+|
T Consensus       213 ls~~~~~-~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~-~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L  290 (529)
T d1jdha_         213 LSVCSSN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA-TKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL  290 (529)
T ss_dssp             HTTSTTH-HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTC-TTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHCCCCC-CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             1013323-304565433346999862540155530156777504321-10256640101445412454288999999988


Q ss_pred             HHHHHHC
Q ss_conf             9999862
Q 002658          271 SALALHS  277 (896)
Q Consensus       271 gsLA~av  277 (896)
                      +.++...
T Consensus       291 ~~l~~~~  297 (529)
T d1jdha_         291 SNLTCNN  297 (529)
T ss_dssp             HHHTTTC
T ss_pred             HHHCCCH
T ss_conf             7501220

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=3.9e-06  Score=57.37  Aligned_cols=120  Identities=9%  Similarity=0.070  Sum_probs=65.2

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHCC
Q ss_conf             99257999999999997308999778999998622299990668999999999999821002456999999999-74359
Q 002658           53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIV-KRLKD  131 (896)
Q Consensus        53 sDRDT~k~A~~eLD~ia~~L~pd~Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d~i~P~LpkIIs~Ii-rrLkD  131 (896)
                      .|...+..|+..|-.+.   +++.++.++..+.    ++++.+|..++.+|+.+....  ..   .+.++..++ ..+.|
T Consensus        31 ~~~~vR~~A~~~L~~~~---~~~~~~~l~~~l~----d~~~~vr~~a~~aL~~l~~~~--~~---~~~~~~~l~~~~l~d   98 (276)
T d1oyza_          31 HNSLKRISSARVLQLRG---GQDAVRLAIEFCS----DKNYIRRDIGAFILGQIKICK--KC---EDNVFNILNNMALND   98 (276)
T ss_dssp             SSHHHHHHHHHHHHHHC---CHHHHHHHHHHHT----CSSHHHHHHHHHHHHHSCCCT--TT---HHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHC---CHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHCCCC--CC---CCCHHHHHHHHHHCC
T ss_conf             99999999999998618---8739999999980----999899999999998720221--21---202299999998669


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             9967899999999999999731666687033766699999998239986999999999999
Q 002658          132 SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM  192 (896)
Q Consensus       132 pDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~eqnk~VQ~gAAsALAkI  192 (896)
                      +++.||.+++.+++.+...-   .     ...+.+++.|...+.+.++.++..|+.++..+
T Consensus        99 ~~~~vr~~a~~aL~~~~~~~---~-----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~  151 (276)
T d1oyza_          99 KSACVRATAIESTAQRCKKN---P-----IYSPKIVEQSQITAFDKSTNVRRATAFAISVI  151 (276)
T ss_dssp             SCHHHHHHHHHHHHHHHHHC---G-----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHCCCC---C-----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf             97668999999999870246---2-----10189999999986472048999999987410

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=6.1e-07  Score=62.94  Aligned_cols=123  Identities=10%  Similarity=0.020  Sum_probs=85.2

Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf             22999906689999999999998210024569999999997435999678999999999999997316666870337666
Q 002658           87 SSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLF  166 (896)
Q Consensus        87 s~ss~ks~vRKeAIlLLG~iAegh~d~i~P~LpkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~l  166 (896)
                      ...++++.+|..|+..|+....          +..++.+++.|+|+++.||..++.+++.+....         ...+..
T Consensus        27 ~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~---------~~~~~~   87 (276)
T d1oyza_          27 LLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK---------KCEDNV   87 (276)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT---------TTHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHHCC----------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC---------CCCCCH
T ss_conf             8469999999999999986188----------739999999980999899999999998720221---------212022


Q ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             99999998-2399869999999999999814999922489999999997129844649999999999
Q 002658          167 VKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGS  232 (896)
Q Consensus       167 LkPLleaL-~eqnk~VQ~gAAsALAkIIE~a~d~~~~yL~~LiPRLlkLLksps~kaK~alLsaIgS  232 (896)
                      +..|+..+ .+.++.+...|+.+|..++....    ...+.+++.+...+.+++..++..++.+++.
T Consensus        88 ~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~  150 (276)
T d1oyza_          88 FNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISV  150 (276)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             99999998669976689999999998702462----1018999999998647204899999998741

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3.4e-07  Score=64.69  Aligned_cols=142  Identities=11%  Similarity=0.081  Sum_probs=56.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf             9990668999999999999821002-4569999999997435-9996789999999999999973166668703376669
Q 002658           90 DPKPAVKKESVRLLALVCELHSELT-STHVTKIISHIVKRLK-DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFV  167 (896)
Q Consensus        90 s~ks~vRKeAIlLLG~iAegh~d~i-~P~LpkIIs~IirrLk-DpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lL  167 (896)
                      +.++.+|..+..+|+.++......- .-.-..+++.+++.|. ++++.||..++++++.++.......   ..-.-...+
T Consensus        70 s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~---~~~~~~~gi  146 (264)
T d1xqra1          70 AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGL---LQFLRLDGF  146 (264)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHH---HHHHHTTHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHH---HHHHHHHHH
T ss_conf             99999999999999999988888889999727637999996049989999999999998742440267---899872012


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             99999982399869999999999999814999922489-99999999712984464999999999998
Q 002658          168 KPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLS  234 (896)
Q Consensus       168 kPLleaL~eqnk~VQ~gAAsALAkIIE~a~d~~~~yL~-~LiPRLlkLLksps~kaK~alLsaIgSLa  234 (896)
                      +.|...|.+.+..++..++.+|..++...++....+.. ..+|.|+.+|++++..++..++.+++.++
T Consensus       147 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~  214 (264)
T d1xqra1         147 SVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV  214 (264)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             68899880586578899999999987445778888887646899999973999899999999999998

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=6.9e-08  Score=69.49  Aligned_cols=187  Identities=12%  Similarity=0.050  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             066899999999999982100-2456999999999743599967899999999999999731666687033766699999
Q 002658           93 PAVKKESVRLLALVCELHSEL-TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLF  171 (896)
Q Consensus        93 s~vRKeAIlLLG~iAegh~d~-i~P~LpkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLl  171 (896)
                      ...|..++.+|..+++.-... ..-.+.-+.+.|...|.++++.||..++++++.++..-....   ..-.-...+++|+
T Consensus        31 ~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~---~~~~~~~~i~~Lv  107 (264)
T d1xqra1          31 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQ---EQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHH---HHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCHHHHH
T ss_conf             9999999999999976978899999869999999998379999999999999999998888888---9999727637999


Q ss_pred             HHHH-CCCHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCCCCHH-HH
Q ss_conf             9982-3998699999999999998149999224-8999999999712984464999999999998402-22722289-99
Q 002658          172 EAMM-EQNKGVQSGAAMCMAKMVECASDPPVVA-FQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLE-PL  247 (896)
Q Consensus       172 eaL~-eqnk~VQ~gAAsALAkIIE~a~d~~~~y-L~~LiPRLlkLLksps~kaK~alLsaIgSLa~vg-a~~~pyld-~l  247 (896)
                      ..|. +.++.++..|+.||..++...+.....+ -...++-|+.+|++++...+..++.+|+.+.... .....+.+ ..
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  187 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM  187 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             99604998999999999999874244026789987201268899880586578899999999987445778888887646


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf             99999964799999999999999999986236799
Q 002658          248 LQSIHECLGSTDWATRKAAADALSALALHSSNLVI  282 (896)
Q Consensus       248 Lp~L~e~Lss~DW~vRKaAaEaLgsLA~avge~L~  282 (896)
                      +|.|...|.+++-.+|..|+.+|..|+...++...
T Consensus       188 v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~  222 (264)
T d1xqra1         188 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVR  222 (264)
T ss_dssp             HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             89999997399989999999999999864889999

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=0.00021  Score=45.36  Aligned_cols=110  Identities=10%  Similarity=0.084  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             78999998622299990668999999999999821002456--9999999997435999678999999999999997316
Q 002658           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTH--VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG  154 (896)
Q Consensus        77 Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d~i~P~--LpkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~  154 (896)
                      +|.++..|.    +.++.++..+..+|+++|....+. ...  -...++.+++.|+++++.||..|+.+++.|+..-...
T Consensus         4 ip~lv~~L~----~~~~~~~~~a~~~l~~l~~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~   78 (457)
T d1xm9a1           4 IPKAVQYLS----SQDEKYQAIGAYYIQHTCFQDESA-KQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN   78 (457)
T ss_dssp             HHHHHHHHH----SSCTHHHHHHHHHHHHHTSSCSSH-HHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred             HHHHHHHHC----CCCHHHHHHHHHHHHHHHCCCHHH-HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf             899999857----999999999999999998499999-999998885999999877999899999999999997499888


Q ss_pred             CCCCCCHH-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66687033-766699999998-239986999999999999981
Q 002658          155 KEENNGTV-VGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVEC  195 (896)
Q Consensus       155 ~~~~~~~~-~~~lLkPLleaL-~eqnk~VQ~gAAsALAkIIE~  195 (896)
                      -    ... -...++.|+..+ ...++.++..|+.+|..+++.
T Consensus        79 ~----~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~  117 (457)
T d1xm9a1          79 K----LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST  117 (457)
T ss_dssp             H----HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred             H----HHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9----99998798289999984337388999999999999864

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.71  E-value=5.6e-06  Score=56.30  Aligned_cols=26  Identities=31%  Similarity=0.512  Sum_probs=10.4

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             99999998239986999999999999
Q 002658          167 VKPLFEAMMEQNKGVQSGAAMCMAKM  192 (896)
Q Consensus       167 LkPLleaL~eqnk~VQ~gAAsALAkI  192 (896)
                      ++.|.++|.++++.|+..|+.+|.++
T Consensus        55 ~~~L~~~l~d~~~~VR~~a~~aL~~i   80 (111)
T d1te4a_          55 VEPLIKLLEDDSGFVRSGAARSLEQI   80 (111)
T ss_dssp             HHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             79987330230337999999999986

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.53  E-value=0.00011  Score=47.39  Aligned_cols=76  Identities=7%  Similarity=0.046  Sum_probs=31.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             99906689999999999998210024569999999997435999678999999999999997316666870337666999
Q 002658           90 DPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKP  169 (896)
Q Consensus        90 s~ks~vRKeAIlLLG~iAegh~d~i~P~LpkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkP  169 (896)
                      ++++.+|..++.+||.+.          -++.++.+++.|.|+++.||.++++++|.+.              -+..++.
T Consensus        33 d~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~--------------~~~~~~~   88 (111)
T d1te4a_          33 NEDWRIRGAAAWIIGNFQ----------DERAVEPLIKLLEDDSGFVRSGAARSLEQIG--------------GERVRAA   88 (111)
T ss_dssp             CSCHHHHHHHHHHHGGGC----------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC--------------SHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCC----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC--------------CCCHHHH
T ss_conf             998789999999987610----------1232799873302303379999999999867--------------6114999


Q ss_pred             HHHHHHCCCHHHHHHHHHHH
Q ss_conf             99998239986999999999
Q 002658          170 LFEAMMEQNKGVQSGAAMCM  189 (896)
Q Consensus       170 LleaL~eqnk~VQ~gAAsAL  189 (896)
                      |...+.++++.|+..|+.+|
T Consensus        89 L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          89 MEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             HHHHTTSCCTHHHHHHHHHG
T ss_pred             HHHHHCCCCHHHHHHHHHHH
T ss_conf             99988299899999999998

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.0063  Score=35.21  Aligned_cols=150  Identities=16%  Similarity=0.069  Sum_probs=84.5

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999997435999678999999999999997316666870337--666999999982399869999999999999814999
Q 002658          122 ISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVV--GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDP  199 (896)
Q Consensus       122 Is~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~--~~lLkPLleaL~eqnk~VQ~gAAsALAkIIE~a~d~  199 (896)
                      +|.+++.|+++++.|+..++.+|+.|+..- ++    ....+  .-.+++|.+.|.++++.+|..|+.||..++...++-
T Consensus         4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~----~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~   78 (457)
T d1xm9a1           4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ES----AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN   78 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SS----HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHCCC-HH----HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf             899999857999999999999999998499-99----9999998885999999877999899999999999997499888


Q ss_pred             CCHHHH-HHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH----------------HCCCCHH
Q ss_conf             922489-999999997129-8446499999999999840222722289999999996----------------4799999
Q 002658          200 PVVAFQ-KLCARICKLLSN-QNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHEC----------------LGSTDWA  261 (896)
Q Consensus       200 ~~~yL~-~LiPRLlkLLks-ps~kaK~alLsaIgSLa~vga~~~pyld~lLp~L~e~----------------Lss~DW~  261 (896)
                      -..+.. ..++.|++++.+ .+..++..++.++..++.............++.+...                ....+..
T Consensus        79 ~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (457)
T d1xm9a1          79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCHH
T ss_conf             99999879828999998433738899999999999986413578888601078899987532211000035530214499


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999986
Q 002658          262 TRKAAADALSALALH  276 (896)
Q Consensus       262 vRKaAaEaLgsLA~a  276 (896)
                      ++..++.+|..++..
T Consensus       159 v~~~a~~~l~~~~~~  173 (457)
T d1xm9a1         159 VFFNATGCLRNLSSA  173 (457)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             999999999987368

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.11  Score=26.55  Aligned_cols=233  Identities=12%  Similarity=0.135  Sum_probs=139.9

Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHH---HH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999862229999066899999999999982100245---69---999999997435999678999999999999997316
Q 002658           81 LNCLYESSNDPKPAVKKESVRLLALVCELHSELTST---HV---TKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG  154 (896)
Q Consensus        81 Ls~L~es~ss~ks~vRKeAIlLLG~iAegh~d~i~P---~L---pkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~  154 (896)
                      |..|...+...+...||.+..++.++.+-..+.-.|   ||   |.|+..++++..+++...      +.|.+.+.|++.
T Consensus        71 l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl------~~G~mLREcik~  144 (330)
T d1upka_          71 LSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL------NCGIMLRECIRH  144 (330)
T ss_dssp             HHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH------HHHHHHHHHHTS
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCHHH------HHHHHHHHHHHH
T ss_conf             99999857779971132299999999616789998608998839789999986328860323------565999999933


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             6668703376669999999823998699999999999998149999224----899999999971298446499999999
Q 002658          155 KEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVA----FQKLCARICKLLSNQNFMAKASLLPVV  230 (896)
Q Consensus       155 ~~~~~~~~~~~lLkPLleaL~eqnk~VQ~gAAsALAkIIE~a~d~~~~y----L~~LiPRLlkLLksps~kaK~alLsaI  230 (896)
                      ..-..--.....+..+|+.+.-++=.+..-|+..+-.+.-..+....+|    .+.....+.++|.+++|-+|-..+..+
T Consensus       145 e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLL  224 (330)
T d1upka_         145 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL  224 (330)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             99999997338899999997387158889899999999970889999999984999999999996488427799889999


Q ss_pred             HHHHH--CC-CCCCCCH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC--H----HHHHHHHHHHHHHHHHHCCC
Q ss_conf             99984--02-2272228--9999999996479999999999999999998623--6----79953989999998621198
Q 002658          231 GSLSQ--VG-AIAPQSL--EPLLQSIHECLGSTDWATRKAAADALSALALHSS--N----LVIDGATSTLTVLEACRFDK  299 (896)
Q Consensus       231 gSLa~--vg-a~~~pyl--d~lLp~L~e~Lss~DW~vRKaAaEaLgsLA~avg--e----~L~Py~~siI~aLE~~RfDK  299 (896)
                      |-+.-  .. ..+.-|+  ..-+..+...|.++...++-.|.-.+-.....-.  +    .+..-...+++++.....|+
T Consensus       225 gelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f~~d~  304 (330)
T d1upka_         225 GELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR  304 (330)
T ss_dssp             HHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99986556799999996788889999998217313377986658553011899977999999983999999998678888


Q ss_pred             CHHHHHHHHHHHHHHHHHCCC
Q ss_conf             723489999999999984058
Q 002658          300 IKPVRDSMNEALQLWKKIAGK  320 (896)
Q Consensus       300 vKpVRDaa~eALelWK~I~~~  320 (896)
                      .. .-..-.|=-.+.++|...
T Consensus       305 ~~-DeqF~~EK~~lI~~I~~L  324 (330)
T d1upka_         305 TE-DEQFNDEKTYLVKQIRDL  324 (330)
T ss_dssp             -C-CSHHHHHHHHHHHHHHTC
T ss_pred             CC-HHHHHHHHHHHHHHHHHC
T ss_conf             73-140789999999999848

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.62  E-value=0.0027  Score=37.73  Aligned_cols=44  Identities=25%  Similarity=0.275  Sum_probs=27.0

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             99999647999999999999999999862367995398999999862119872348999999
Q 002658          249 QSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEA  310 (896)
Q Consensus       249 p~L~e~Lss~DW~vRKaAaEaLgsLA~avge~L~Py~~siI~aLE~~RfDKvKpVRDaa~eA  310 (896)
                      +.|..++.+++|.+|.++++.+.              ...+..   . -|.++.||+.+.+.
T Consensus       189 ~~L~~l~~D~d~~VR~aaae~~~--------------~~ll~~---L-~D~d~~VR~aA~~~  232 (233)
T d1lrva_         189 DDLLELLHDPDWTVRLAAVEHAS--------------LEALRE---L-DEPDPEVRLAIAGR  232 (233)
T ss_dssp             GGGGGGGGCSSHHHHHHHHHHSC--------------HHHHHH---C-CCCCHHHHHHHHCC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHCC--------------HHHHHH---H-CCCCHHHHHHHHHH
T ss_conf             99999873998899999997063--------------999998---6-79999999999970

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=92.48  E-value=0.26  Score=24.11  Aligned_cols=188  Identities=13%  Similarity=0.065  Sum_probs=78.2

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             99999997308999778999998622299990668999999999999821002456999999999743599967899999
Q 002658           62 IEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACR  141 (896)
Q Consensus        62 ~~eLD~ia~~L~pd~Lp~lLs~L~es~ss~ks~vRKeAIlLLG~iAegh~d~i~P~LpkIIs~IirrLkDpDs~VR~Aa~  141 (896)
                      +..|-++.+.++.++|..+...+.     .++..|+-.+   ..++. +|.  .+-+    .++...+...+-..-.+. 
T Consensus        45 F~~Lv~~lR~~~~e~l~~v~~~~~-----~~~~~r~~~l---Dal~~-~GT--~~a~----~~i~~~I~~~~ls~~ea~-  108 (336)
T d1lsha1          45 FLRLTAFLRNVDAGVLQSIWHKLH-----QQKDYRRWIL---DAVPA-MAT--SEAL----LFLKRTLASEQLTSAEAT-  108 (336)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHT-----TSHHHHHHHH---HHHHH-HCS--HHHH----HHHHHHHHTTCSCHHHHH-
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH-----CCHHHHHHHH---HHHHH-HCC--HHHH----HHHHHHHHCCCCCHHHHH-
T ss_conf             999999997799999999999985-----2846899999---99888-179--9999----999999985999999999-


Q ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHH-C---CCCCCHHHHHHHHHHHH
Q ss_conf             9999999997316666870337666999999982----39986999999999999981-4---99992248999999999
Q 002658          142 DSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM----EQNKGVQSGAAMCMAKMVEC-A---SDPPVVAFQKLCARICK  213 (896)
Q Consensus       142 daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~----eqnk~VQ~gAAsALAkIIE~-a---~d~~~~yL~~LiPRLlk  213 (896)
                      ..+..+.. ...|.        .+++.-+++.+.    ..++.+...+.++++.++-. +   ++-..++++.+...+.+
T Consensus       109 ~~l~~l~~-~~~Pt--------~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~  179 (336)
T d1lsha1         109 QIVASTLS-NQQAT--------RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQ  179 (336)
T ss_dssp             HHHHHHHH-TCCCC--------HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHH
T ss_pred             HHHHHHHC-CCCCC--------HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             99999762-47899--------9999999999708200126248999999999999999657887719999999999997


Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHCCH
Q ss_conf             712984464999999999998402227222899999999964---799999999999999999986236
Q 002658          214 LLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECL---GSTDWATRKAAADALSALALHSSN  279 (896)
Q Consensus       214 LLksps~kaK~alLsaIgSLa~vga~~~pyld~lLp~L~e~L---ss~DW~vRKaAaEaLgsLA~avge  279 (896)
                      .++..+...+...|.+||=+   |  .+..++.+.+.+...-   ....-.+|.+|+.+|..++...+.
T Consensus       180 ~~~~~~~~~~~~~LkaLGN~---g--~p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~  243 (336)
T d1lsha1         180 SSDRAKEEEIVLALKALGNA---G--QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR  243 (336)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---T--CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH
T ss_pred             HHCCCCHHHHHHHHHHHHCC---C--CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH
T ss_conf             55245639999999997414---9--8768999999865656544442578999999999876550869

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=88.88  E-value=0.54  Score=21.91  Aligned_cols=194  Identities=10%  Similarity=0.059  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             99999999999982100245699999999974359996789999999999999973166668703376669999999823
Q 002658           97 KESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME  176 (896)
Q Consensus        97 KeAIlLLG~iAegh~d~i~P~LpkIIs~IirrLkDpDs~VR~Aa~daIG~La~~li~~~~~~~~~~~~~lLkPLleaL~e  176 (896)
                      .++..+|..++. +..-..+++..+...+...-.-.++.||.++.-++|.++..+......-..+....+...|.+++..
T Consensus       105 ~ea~~~l~~l~~-~~~Pt~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~  183 (336)
T d1lsha1         105 AEATQIVASTLS-NQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDR  183 (336)
T ss_dssp             HHHHHHHHHHHH-TCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHC-CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             999999999762-4789999999999997082001262489999999999999996578877199999999999975524


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf             998699999999999998149999224899999999971298-------4464999999999998402227222899999
Q 002658          177 QNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ-------NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQ  249 (896)
Q Consensus       177 qnk~VQ~gAAsALAkIIE~a~d~~~~yL~~LiPRLlkLLksp-------s~kaK~alLsaIgSLa~vga~~~pyld~lLp  249 (896)
                      .+......+.-+|..+    +.+      ..++.|.+++...       ...+|.+++.++..++.   ..+   ..+.+
T Consensus       184 ~~~~~~~~~LkaLGN~----g~p------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~---~~p---~~v~~  247 (336)
T d1lsha1         184 AKEEEIVLALKALGNA----GQP------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK---RDP---RKVQE  247 (336)
T ss_dssp             TCHHHHHHHHHHHHHH----TCG------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG---TCH---HHHHH
T ss_pred             CCHHHHHHHHHHHHCC----CCH------HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH---CCC---HHHHH
T ss_conf             5639999999997414----987------6899999986565654444257899999999987655---086---99999


Q ss_pred             HHHHHHC--CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             9999647--99999999999999999986236799539899999986211987234899999999999840
Q 002658          250 SIHECLG--STDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA  318 (896)
Q Consensus       250 ~L~e~Ls--s~DW~vRKaAaEaLgsLA~avge~L~Py~~siI~aLE~~RfDKvKpVRDaa~eALelWK~I~  318 (896)
                      .+...+.  ..+.++|.+|...|-   ..-|     -...+..+.+....|+...|+.+   .....+.+.
T Consensus       248 ~l~~i~~n~~e~~EvRiaA~~~lm---~t~P-----~~~~l~~i~~~l~~E~~~QV~sf---v~S~l~~la  307 (336)
T d1lsha1         248 IVLPIFLNVAIKSELRIRSCIVFF---ESKP-----SVALVSMVAVRLRREPNLQVASF---VYSQMRSLS  307 (336)
T ss_dssp             HHHHHHHCTTSCHHHHHHHHHHHH---HTCC-----CHHHHHHHHHHHTTCSCHHHHHH---HHHHHHHHT
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHHH---HCCC-----CHHHHHHHHHHHHHCCHHHHHHH---HHHHHHHHH
T ss_conf             999997589998689999999998---5399-----99999999999874827999999---999999998

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=87.42  E-value=0.06  Score=28.48  Aligned_cols=44  Identities=20%  Similarity=0.046  Sum_probs=27.4

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             9999647999999999999999999862367995398999999862119872348999999
Q 002658          250 SIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEA  310 (896)
Q Consensus       250 ~L~e~Lss~DW~vRKaAaEaLgsLA~avge~L~Py~~siI~aLE~~RfDKvKpVRDaa~eA  310 (896)
                      .|..++.++++.+|..+++.|+.                 ..|.....|....||-.+.+.
T Consensus       166 ~L~~l~~D~d~~VR~~aa~~L~~-----------------~~L~~l~~D~d~~VR~aaae~  209 (233)
T d1lrva_         166 SLGLMTQDPEPEVRRIVASRLRG-----------------DDLLELLHDPDWTVRLAAVEH  209 (233)
T ss_dssp             GGGGSTTCSSHHHHHHHHHHCCG-----------------GGGGGGGGCSSHHHHHHHHHH
T ss_pred             HHHHHCCCCCHHHHHHHHHHCCC-----------------HHHHHHHHCCCHHHHHHHHHH
T ss_conf             99987059988999999984584-----------------999998739988999999970