Citrus Sinensis ID: 002707
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 890 | 2.2.26 [Sep-21-2011] | |||||||
| D8WUA4 | 1058 | Protein translocase subun | yes | no | 1.0 | 0.841 | 0.797 | 0.0 | |
| Q55709 | 932 | Protein translocase subun | N/A | no | 0.882 | 0.842 | 0.412 | 0.0 | |
| Q5N2Q7 | 948 | Protein translocase subun | yes | no | 0.887 | 0.833 | 0.415 | 0.0 | |
| Q55357 | 948 | Protein translocase subun | yes | no | 0.887 | 0.833 | 0.415 | 0.0 | |
| Q10VW7 | 936 | Protein translocase subun | yes | no | 0.894 | 0.850 | 0.412 | 0.0 | |
| Q8DHU4 | 929 | Protein translocase subun | yes | no | 0.897 | 0.860 | 0.414 | 0.0 | |
| Q2JJ09 | 957 | Protein translocase subun | yes | no | 0.760 | 0.707 | 0.467 | 0.0 | |
| Q7UZM1 | 943 | Protein translocase subun | yes | no | 0.893 | 0.843 | 0.416 | 0.0 | |
| B7K818 | 935 | Protein translocase subun | yes | no | 0.753 | 0.717 | 0.460 | 0.0 | |
| Q2JW99 | 954 | Protein translocase subun | yes | no | 0.769 | 0.718 | 0.468 | 1e-180 |
| >sp|D8WUA4|SECA2_ARATH Protein translocase subunit SECA2, chloroplastic OS=Arabidopsis thaliana GN=SECA2 PE=2 SV=1 | Back alignment and function desciption |
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Score = 1518 bits (3929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 728/913 (79%), Positives = 810/913 (88%), Gaps = 23/913 (2%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDA 37
MRHFDVQIIGG VLHDGSIAEMKT VVTVNDYLAQRDA
Sbjct: 146 MRHFDVQIIGGGVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 205
Query: 38 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 97
EWM RVHRFLGLSVGLIQRGM EER+ NY CDITYTNNSELGFDYLRDNL +N EQLVM
Sbjct: 206 EWMGRVHRFLGLSVGLIQRGMKAEERKFNYSCDITYTNNSELGFDYLRDNLTSNREQLVM 265
Query: 98 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 157
RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA+++ ARYPVAAKVAELLV+ HY VELK
Sbjct: 266 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEANENAARYPVAAKVAELLVKDSHYKVELK 325
Query: 158 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 217
NSVELTEEGI+LAEMALET DLWDENDPWARFVMNALKAKEFY+RDVQYIVR+GKALII
Sbjct: 326 ENSVELTEEGISLAEMALETGDLWDENDPWARFVMNALKAKEFYKRDVQYIVRDGKALII 385
Query: 218 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 277
NELTGRVE+KRRWSEG+HQAVEAKEGL+IQADS+VVAQITYQSLFKLYPKLSGMTGTAKT
Sbjct: 386 NELTGRVEDKRRWSEGVHQAVEAKEGLEIQADSIVVAQITYQSLFKLYPKLSGMTGTAKT 445
Query: 278 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 337
EEKEFLKMFQ+PVIEVPTNL NIR+DLPIQ+FATARGKWE+ R+EVE MF GRPVLVG+
Sbjct: 446 EEKEFLKMFQIPVIEVPTNLSNIRIDLPIQAFATARGKWEHVRREVEDMFGQGRPVLVGT 505
Query: 338 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 397
TSVENSEYLS+LLK+ GIPHNVLNARPKYAAREA+ +AQAGRKYAITISTNMAGRGTDII
Sbjct: 506 TSVENSEYLSELLKEWGIPHNVLNARPKYAAREADFIAQAGRKYAITISTNMAGRGTDII 565
Query: 398 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 457
LGGNPKMLA++IIED +L LT E L +DD S KVLS+IK+G SSLALLA+A+L+A
Sbjct: 566 LGGNPKMLAREIIEDSILSYLTSEVLADNIDDDELSQKVLSKIKVGPSSLALLARASLMA 625
Query: 458 KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVL 517
KYVGK+E KSWT ++AKS +ES+E SQ+M+ ELQ LI++QS MYPLGP +AL YLSVL
Sbjct: 626 KYVGKSESKSWTRKKAKSVVTESLEKSQTMDPMELQNLINEQSEMYPLGPAIALAYLSVL 685
Query: 518 KDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 577
KDCE HC +EGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFM+SLQDEM
Sbjct: 686 KDCEAHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMISLQDEM 745
Query: 578 FQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVL 637
FQKF+FDT WAV LIS+ITNDED+PIEGD IV+QLL LQI+AEKY+FGIRKSLVEFDEVL
Sbjct: 746 FQKFNFDTEWAVRLISKITNDEDLPIEGDTIVKQLLALQINAEKYFFGIRKSLVEFDEVL 805
Query: 638 EVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEF 697
EVQRKHVYDLRQ +LTG NESCSQ IFQYMQAVVDEI+ GN +P KHPRYWSL KLLKEF
Sbjct: 806 EVQRKHVYDLRQLLLTGENESCSQHIFQYMQAVVDEIVVGNSNPQKHPRYWSLAKLLKEF 865
Query: 698 IAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSL 757
+AI+G +LD+ F+GI+ +T+L+S+E L E +SI++ + P LPKPPN FRGIRRK+SSL
Sbjct: 866 MAISGNLLDESFSGITEETMLQSLENLHEGSSIEMEDLSLPHLPKPPNAFRGIRRKNSSL 925
Query: 758 KRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVK 817
+RWL ICSD+LT +G YR NLLRK+LGD LIASYLNVVQES +DD Y+KE+ERAVL+K
Sbjct: 926 RRWLDICSDNLTGSGSYRTLINLLRKFLGDYLIASYLNVVQESGFDDGYIKEIERAVLLK 985
Query: 818 TLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQY 877
TLDC+WRDHL+NMN+LSSAVNVRSF HRNPLEEYKIDGCRFFISMLSATRRLTVES++QY
Sbjct: 986 TLDCYWRDHLVNMNKLSSAVNVRSFAHRNPLEEYKIDGCRFFISMLSATRRLTVESILQY 1045
Query: 878 WSSPMESQELFLS 890
WSSPMESQELF+S
Sbjct: 1046 WSSPMESQELFIS 1058
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Involved in protein export. Probably interacts with other proteins to allow the postimport or conservative sorting pathway for inner membrane proteins in plastids. May have a central role in coupling the hydrolysis of ATP to the transfer of proteins across the membrane. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q55709|SECA_SYNY3 Protein translocase subunit SecA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=secA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q5N2Q7|SECA_SYNP6 Protein translocase subunit SecA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=secA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q55357|SECA_SYNE7 Protein translocase subunit SecA OS=Synechococcus elongatus (strain PCC 7942) GN=secA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q10VW7|SECA_TRIEI Protein translocase subunit SecA OS=Trichodesmium erythraeum (strain IMS101) GN=secA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8DHU4|SECA_THEEB Protein translocase subunit SecA OS=Thermosynechococcus elongatus (strain BP-1) GN=secA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2JJ09|SECA_SYNJB Protein translocase subunit SecA OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=secA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q7UZM1|SECA_PROMP Protein translocase subunit SecA OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=secA PE=3 SV=1 | Back alignment and function description |
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| >sp|B7K818|SECA_CYAP7 Protein translocase subunit SecA OS=Cyanothece sp. (strain PCC 7424) GN=secA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2JW99|SECA_SYNJA Protein translocase subunit SecA OS=Synechococcus sp. (strain JA-3-3Ab) GN=secA PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 890 | ||||||
| 302141769 | 1067 | unnamed protein product [Vitis vinifera] | 1.0 | 0.834 | 0.844 | 0.0 | |
| 359492369 | 1817 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.489 | 0.844 | 0.0 | |
| 224062991 | 1053 | predicted protein [Populus trichocarpa] | 0.995 | 0.841 | 0.836 | 0.0 | |
| 255558580 | 1794 | F-box and wd40 domain protein, putative | 0.994 | 0.493 | 0.824 | 0.0 | |
| 449457678 | 1057 | PREDICTED: protein translocase subunit S | 0.998 | 0.841 | 0.825 | 0.0 | |
| 356518567 | 1815 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.490 | 0.811 | 0.0 | |
| 449523083 | 878 | PREDICTED: protein translocase subunit S | 0.970 | 0.984 | 0.843 | 0.0 | |
| 334182752 | 1058 | preprotein translocase secA-like protein | 1.0 | 0.841 | 0.797 | 0.0 | |
| 334182750 | 1805 | preprotein translocase secA-like protein | 1.0 | 0.493 | 0.797 | 0.0 | |
| 240254134 | 1051 | preprotein translocase secA-like protein | 0.992 | 0.840 | 0.794 | 0.0 |
| >gi|302141769|emb|CBI18972.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1596 bits (4133), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 771/913 (84%), Positives = 828/913 (90%), Gaps = 23/913 (2%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDA 37
MRHFDVQIIGGAVLHDGSIAEMKT VVTVNDYLAQRDA
Sbjct: 155 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 214
Query: 38 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 97
EWM RVHRFLGLSVGLIQRGM EERRSNY CDITYTNNSELGFDYLRDNLA S QLVM
Sbjct: 215 EWMGRVHRFLGLSVGLIQRGMTSEERRSNYGCDITYTNNSELGFDYLRDNLAGTSGQLVM 274
Query: 98 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 157
RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD ARYPVAAK+AELL++GLHY VELK
Sbjct: 275 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKIAELLIRGLHYNVELK 334
Query: 158 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 217
+NSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRR+VQYIVRNGKALII
Sbjct: 335 DNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRNVQYIVRNGKALII 394
Query: 218 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 277
NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT
Sbjct: 395 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 454
Query: 278 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 337
EEKEFLKMFQMPVIEVP NLPNIR DLPIQ+FATARGKWE R+EVE MFR GRPVLVG+
Sbjct: 455 EEKEFLKMFQMPVIEVPPNLPNIRKDLPIQAFATARGKWENVREEVEYMFRQGRPVLVGT 514
Query: 338 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 397
TSVENSEYLSDLLK++ IPHNVLNARPKYAAREAE VAQAGRK+AITISTNMAGRGTDII
Sbjct: 515 TSVENSEYLSDLLKERKIPHNVLNARPKYAAREAEIVAQAGRKFAITISTNMAGRGTDII 574
Query: 398 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 457
LGGNPKMLAK++IED LL LT+EA NVEVD + +S KVLS+IK+GS+SLALLAK AL+A
Sbjct: 575 LGGNPKMLAKEVIEDSLLSFLTQEAPNVEVDGEPTSQKVLSKIKIGSASLALLAKTALMA 634
Query: 458 KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVL 517
KYV K EGKSWTYQ+AKS SESVEMSQS++ KEL+KL ++QS MYPLGPT+AL YLSVL
Sbjct: 635 KYVSKGEGKSWTYQKAKSMISESVEMSQSIDWKELEKLANEQSEMYPLGPTIALAYLSVL 694
Query: 518 KDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 577
KDCE HC +EGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM
Sbjct: 695 KDCEAHCLSEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 754
Query: 578 FQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVL 637
FQKF+FDT WAV LIS+ITNDED+PIEGDAIV+QLL LQI+AEKY+FGIRKSLVEFDEVL
Sbjct: 755 FQKFNFDTEWAVRLISKITNDEDIPIEGDAIVKQLLALQINAEKYFFGIRKSLVEFDEVL 814
Query: 638 EVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEF 697
EVQRKHVYDLRQ ILTG ESCSQ +FQYMQAVVDEI+FGNV+ LKHP W+L KLLKEF
Sbjct: 815 EVQRKHVYDLRQLILTGDIESCSQHVFQYMQAVVDEIVFGNVNALKHPSKWNLGKLLKEF 874
Query: 698 IAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSL 757
I I+G++LDD F GIS +TLLK++ +L EL+S+DINNFY P+LP PPN FRGIRRK+SSL
Sbjct: 875 IGISGRLLDDSFVGISEETLLKALAQLHELSSVDINNFYLPNLPTPPNAFRGIRRKTSSL 934
Query: 758 KRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVK 817
KRWLAICSDD ++GRYRAT NLLRKYLGD LIASYL+ VQES YDD Y+KE+ERAVLVK
Sbjct: 935 KRWLAICSDDSARDGRYRATANLLRKYLGDFLIASYLDAVQESGYDDAYVKEIERAVLVK 994
Query: 818 TLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQY 877
TLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESL++Y
Sbjct: 995 TLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLLRY 1054
Query: 878 WSSPMESQELFLS 890
WSSPMESQELF+S
Sbjct: 1055 WSSPMESQELFVS 1067
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359492369|ref|XP_002284600.2| PREDICTED: uncharacterized protein LOC100248990 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224062991|ref|XP_002300961.1| predicted protein [Populus trichocarpa] gi|222842687|gb|EEE80234.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255558580|ref|XP_002520315.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223540534|gb|EEF42101.1| F-box and wd40 domain protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449457678|ref|XP_004146575.1| PREDICTED: protein translocase subunit SECA2, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356518567|ref|XP_003527950.1| PREDICTED: uncharacterized protein LOC100793437 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449523083|ref|XP_004168554.1| PREDICTED: protein translocase subunit SECA2, chloroplastic-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|334182752|ref|NP_001185059.1| preprotein translocase secA-like protein [Arabidopsis thaliana] gi|363805541|sp|D8WUA4.1|SECA2_ARATH RecName: Full=Protein translocase subunit SECA2, chloroplastic; Flags: Precursor gi|298108793|gb|ADI56650.1| plastid SecA2 [Arabidopsis thaliana] gi|332192013|gb|AEE30134.1| preprotein translocase secA-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|334182750|ref|NP_001185058.1| preprotein translocase secA-like protein [Arabidopsis thaliana] gi|332192012|gb|AEE30133.1| preprotein translocase secA-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|240254134|ref|NP_173584.5| preprotein translocase secA-like protein [Arabidopsis thaliana] gi|332192011|gb|AEE30132.1| preprotein translocase secA-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 890 | ||||||
| TIGR_CMR|CHY_0162 | 874 | CHY_0162 "preprotein transloca | 0.423 | 0.431 | 0.514 | 4.7e-155 | |
| UNIPROTKB|P0A5Y8 | 949 | secA1 "Protein translocase sub | 0.431 | 0.404 | 0.497 | 2.8e-147 | |
| TIGR_CMR|GSU_2050 | 897 | GSU_2050 "preprotein transloca | 0.424 | 0.421 | 0.462 | 1e-137 | |
| TIGR_CMR|DET_0434 | 952 | DET_0434 "preprotein transloca | 0.380 | 0.356 | 0.478 | 2.3e-137 | |
| TIGR_CMR|BA_5421 | 835 | BA_5421 "preprotein translocas | 0.428 | 0.456 | 0.478 | 1.5e-136 | |
| UNIPROTKB|Q7WWK0 | 838 | secA "Protein translocase subu | 0.414 | 0.440 | 0.457 | 1.3e-129 | |
| TIGR_CMR|APH_1178 | 873 | APH_1178 "preprotein transloca | 0.422 | 0.430 | 0.471 | 3.3e-129 | |
| TIGR_CMR|CJE_1020 | 862 | CJE_1020 "preprotein transloca | 0.412 | 0.425 | 0.445 | 1.4e-128 | |
| TIGR_CMR|SPO_0057 | 901 | SPO_0057 "preprotein transloca | 0.424 | 0.419 | 0.465 | 6e-128 | |
| NCBI_NP|NP_357091.2 | 902 | secA "preprotein translocase s | 0.428 | 0.422 | 0.460 | 2e-125 |
| TIGR_CMR|CHY_0162 CHY_0162 "preprotein translocase, SecA subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 986 (352.1 bits), Expect = 4.7e-155, Sum P(4) = 4.7e-155
Identities = 197/383 (51%), Positives = 276/383 (72%)
Query: 25 VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYL 84
+VTVNDYLA+RDAEWM ++++FLGLSVGL+ GM E+++ Y DITY N+E GFDYL
Sbjct: 126 IVTVNDYLARRDAEWMGKIYKFLGLSVGLVVHGMDYAEKKAAYLADITYGTNNEFGFDYL 185
Query: 85 RDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAE 144
RDN+A + +Q+V R ++AI+DEVDS+LIDE R PL+ISGEA K Y AK+ +
Sbjct: 186 RDNMAIHPDQVVQR---ELYYAIIDEVDSILIDEARTPLIISGEAEKSTDLYYTFAKIVK 242
Query: 145 LLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLW-DENDPWARFVMNALKAKEFYRR 203
LV G YTV+ K ++V TE GI E L +L+ DE+ + ALKA+ +R
Sbjct: 243 QLVPGEDYTVDEKAHAVMPTEAGIHKVEKMLGIQNLYADEHMELTHHLNAALKAQALMKR 302
Query: 204 DVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFK 263
D Y+V++G+ +I++E TGR+ RR+S+G+HQA+EAKEG+KI+ ++ +A IT+Q+ F+
Sbjct: 303 DRDYVVKDGQVIIVDEFTGRLMFGRRYSDGLHQAIEAKEGVKIEQETQTLATITFQNYFR 362
Query: 264 LYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEV 323
+Y KL+GMTGTA+TEE EF K++ + V+ +PT+ P IR DLP F T + K++ +EV
Sbjct: 363 MYEKLAGMTGTAETEENEFRKIYNLSVVVIPTHKPMIRKDLPDVIFKTEKAKFKAIVEEV 422
Query: 324 ESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAI 383
+ G+P+L+G+ S+E SE LS++LK++GIPH VLNA KY +EAE VAQAGR A+
Sbjct: 423 ARRHQTGQPILIGTISIEKSEMLSEMLKKRGIPHQVLNA--KYHEKEAEIVAQAGRLGAV 480
Query: 384 TISTNMAGRGTDIILGGNPKMLA 406
TI+TNMAGRGTDI+LGGNP+ LA
Sbjct: 481 TIATNMAGRGTDILLGGNPEFLA 503
|
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| UNIPROTKB|P0A5Y8 secA1 "Protein translocase subunit SecA 1" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|GSU_2050 GSU_2050 "preprotein translocase, SecA subunit" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
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| TIGR_CMR|DET_0434 DET_0434 "preprotein translocase, SecA subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
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| TIGR_CMR|BA_5421 BA_5421 "preprotein translocase, SecA subunit" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q7WWK0 secA "Protein translocase subunit SecA" [Streptococcus parasanguinis (taxid:1318)] | Back alignment and assigned GO terms |
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| TIGR_CMR|APH_1178 APH_1178 "preprotein translocase, SecA subunit" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CJE_1020 CJE_1020 "preprotein translocase, SecA subunit" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
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| TIGR_CMR|SPO_0057 SPO_0057 "preprotein translocase, SecA subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
| NCBI_NP|NP_357091.2 secA "preprotein translocase subunit SecA" [Agrobacterium fabrum str. C58 (taxid:176299)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q55357 | SECA_SYNE7 | No assigned EC number | 0.4154 | 0.8876 | 0.8333 | yes | no |
| Q7UZM1 | SECA_PROMP | No assigned EC number | 0.4163 | 0.8932 | 0.8430 | yes | no |
| Q5N2Q7 | SECA_SYNP6 | No assigned EC number | 0.4154 | 0.8876 | 0.8333 | yes | no |
| B0JLJ4 | SECA_MICAN | No assigned EC number | 0.3991 | 0.8831 | 0.8379 | yes | no |
| A0T0G5 | SECA_PHATC | No assigned EC number | 0.3696 | 0.8707 | 0.8747 | yes | no |
| B7K110 | SECA_CYAP8 | No assigned EC number | 0.4096 | 0.8808 | 0.8385 | yes | no |
| B2IUA9 | SECA_NOSP7 | No assigned EC number | 0.4088 | 0.8853 | 0.8473 | yes | no |
| Q7V9M9 | SECA_PROMA | No assigned EC number | 0.4099 | 0.9056 | 0.8520 | yes | no |
| Q10VW7 | SECA_TRIEI | No assigned EC number | 0.4127 | 0.8943 | 0.8504 | yes | no |
| Q8DHU4 | SECA_THEEB | No assigned EC number | 0.4140 | 0.8977 | 0.8600 | yes | no |
| D8WUA4 | SECA2_ARATH | No assigned EC number | 0.7973 | 1.0 | 0.8412 | yes | no |
| A2BZ24 | SECA_PROM5 | No assigned EC number | 0.4071 | 0.9 | 0.8494 | yes | no |
| B1X0K6 | SECA_CYAA5 | No assigned EC number | 0.3991 | 0.8932 | 0.8520 | yes | no |
| B1XL02 | SECA_SYNP2 | No assigned EC number | 0.3997 | 0.8831 | 0.8379 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 890 | |||
| CHL00122 | 870 | CHL00122, secA, preprotein translocase subunit Sec | 0.0 | |
| PRK12902 | 939 | PRK12902, secA, preprotein translocase subunit Sec | 0.0 | |
| PRK12904 | 830 | PRK12904, PRK12904, preprotein translocase subunit | 0.0 | |
| TIGR00963 | 745 | TIGR00963, secA, preprotein translocase, SecA subu | 0.0 | |
| COG0653 | 822 | COG0653, SecA, Preprotein translocase subunit SecA | 1e-176 | |
| PRK12906 | 796 | PRK12906, secA, preprotein translocase subunit Sec | 1e-171 | |
| PRK09200 | 790 | PRK09200, PRK09200, preprotein translocase subunit | 1e-163 | |
| smart00957 | 380 | smart00957, SecA_DEAD, SecA DEAD-like domain | 1e-162 | |
| PRK12903 | 925 | PRK12903, secA, preprotein translocase subunit Sec | 1e-153 | |
| PRK12898 | 656 | PRK12898, secA, preprotein translocase subunit Sec | 1e-152 | |
| pfam07517 | 381 | pfam07517, SecA_DEAD, SecA DEAD-like domain | 1e-146 | |
| TIGR03714 | 762 | TIGR03714, secA2, accessory Sec system translocase | 1e-128 | |
| PRK13103 | 913 | PRK13103, secA, preprotein translocase subunit Sec | 1e-121 | |
| PRK12326 | 764 | PRK12326, PRK12326, preprotein translocase subunit | 1e-117 | |
| PRK13107 | 908 | PRK13107, PRK13107, preprotein translocase subunit | 1e-112 | |
| PRK13104 | 896 | PRK13104, secA, preprotein translocase subunit Sec | 1e-108 | |
| TIGR04221 | 762 | TIGR04221, SecA2_Mycobac, accessory Sec system tra | 1e-105 | |
| PRK12901 | 1112 | PRK12901, secA, preprotein translocase subunit Sec | 6e-74 | |
| PRK12900 | 1025 | PRK12900, secA, preprotein translocase subunit Sec | 5e-63 | |
| PRK12899 | 970 | PRK12899, secA, preprotein translocase subunit Sec | 4e-61 | |
| PRK12904 | 830 | PRK12904, PRK12904, preprotein translocase subunit | 5e-56 | |
| TIGR00963 | 745 | TIGR00963, secA, preprotein translocase, SecA subu | 1e-52 | |
| PRK12900 | 1025 | PRK12900, secA, preprotein translocase subunit Sec | 4e-48 | |
| PRK12906 | 796 | PRK12906, secA, preprotein translocase subunit Sec | 1e-47 | |
| PRK12901 | 1112 | PRK12901, secA, preprotein translocase subunit Sec | 2e-45 | |
| pfam01043 | 113 | pfam01043, SecA_PP_bind, SecA preprotein cross-lin | 7e-44 | |
| smart00958 | 114 | smart00958, SecA_PP_bind, SecA preprotein cross-li | 6e-40 | |
| PRK12899 | 970 | PRK12899, secA, preprotein translocase subunit Sec | 3e-38 | |
| pfam07516 | 213 | pfam07516, SecA_SW, SecA Wing and Scaffold domain | 3e-36 | |
| PRK09200 | 790 | PRK09200, PRK09200, preprotein translocase subunit | 6e-36 | |
| COG0653 | 822 | COG0653, SecA, Preprotein translocase subunit SecA | 2e-34 | |
| PRK12903 | 925 | PRK12903, secA, preprotein translocase subunit Sec | 2e-34 | |
| PRK13103 | 913 | PRK13103, secA, preprotein translocase subunit Sec | 2e-34 | |
| PRK13107 | 908 | PRK13107, PRK13107, preprotein translocase subunit | 4e-32 | |
| PRK12901 | 1112 | PRK12901, secA, preprotein translocase subunit Sec | 5e-26 | |
| PRK12900 | 1025 | PRK12900, secA, preprotein translocase subunit Sec | 9e-25 | |
| PRK13104 | 896 | PRK13104, secA, preprotein translocase subunit Sec | 2e-23 | |
| TIGR03714 | 762 | TIGR03714, secA2, accessory Sec system translocase | 6e-23 | |
| PRK12898 | 656 | PRK12898, secA, preprotein translocase subunit Sec | 7e-22 | |
| PRK12899 | 970 | PRK12899, secA, preprotein translocase subunit Sec | 2e-21 | |
| PRK12326 | 764 | PRK12326, PRK12326, preprotein translocase subunit | 5e-21 | |
| TIGR04221 | 762 | TIGR04221, SecA2_Mycobac, accessory Sec system tra | 3e-17 | |
| PRK12902 | 939 | PRK12902, secA, preprotein translocase subunit Sec | 8e-10 | |
| PRK12900 | 1025 | PRK12900, secA, preprotein translocase subunit Sec | 2e-06 | |
| PRK12899 | 970 | PRK12899, secA, preprotein translocase subunit Sec | 2e-06 | |
| PRK13104 | 896 | PRK13104, secA, preprotein translocase subunit Sec | 7e-06 | |
| PRK12901 | 1112 | PRK12901, secA, preprotein translocase subunit Sec | 4e-05 |
| >gnl|CDD|214371 CHL00122, secA, preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Score = 770 bits (1991), Expect = 0.0
Identities = 356/898 (39%), Positives = 501/898 (55%), Gaps = 132/898 (14%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDA 37
+RHFDVQ+IGG VL+DG IAEMKT +VTVNDYLA+RD
Sbjct: 75 LRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQ 134
Query: 38 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 97
EWM +++RFLGL+VGLIQ GM EER+ NY DITY NSELGFDYLRDN+A + +V
Sbjct: 135 EWMGQIYRFLGLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQ 194
Query: 98 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 157
R PF++ I+DEVDS+LIDE R PL+ISG++ ++ +Y VA ++A+ L + +HY V+ K
Sbjct: 195 R---PFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEK 251
Query: 158 NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 217
N +V LTE+GI E L+ DL+ NDPW +++NALKAKE + ++V YIVRN + +I+
Sbjct: 252 NKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVRNNEIIIV 311
Query: 218 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 277
+E TGR+ RRWS+G+HQA+EAKE L I+ ++ +A ITYQ+ F LYPKLSGMTGTAKT
Sbjct: 312 DEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKT 371
Query: 278 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 337
EE EF K++ + V+ +PT+ P +R DLP + KW E M + GRP+L+G+
Sbjct: 372 EELEFEKIYNLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGT 431
Query: 338 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 397
T++E SE LS LLK+ +PH +LNA+P+ RE+E VAQAGRK +ITI+TNMAGRGTDII
Sbjct: 432 TTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRKGSITIATNMAGRGTDII 491
Query: 398 LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAAL-L 456
LGGNP+ KK + D LL + E T S L+ + + L L+ +
Sbjct: 492 LGGNPEFKLKKELYDLLLSYKSNE------KISTISQNFLNILNSLKNDLKFLSLSDFEN 545
Query: 457 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSV 516
K + +A S+ Q + Y +
Sbjct: 546 LKILNEAS-------------------EISIPKNSYQLSLRF-------------LYNEL 573
Query: 517 LKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDE 576
L+ + E VK+LGGL+VIGT HESRRIDNQLRGRAGRQGDPGS+RF +SL+D
Sbjct: 574 LEKYKKLQEKEKKIVKKLGGLYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFLSLEDN 633
Query: 577 MFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEV 636
+ + F D + + + N +D P+E + + L Q E+YY+ RK L E+D+V
Sbjct: 634 LLRIFGGD---KIQNLMQTLNLDDEPLESKLLSKSLDSAQKKVEEYYYDQRKQLFEYDQV 690
Query: 637 LEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKE 696
L QRK +Y R+ IL ++S I Y + V+D+II S +
Sbjct: 691 LNKQRKAIYSERRKILE--SQSLRDWILAYGEQVIDDII---------TFLKSRKNPNNK 739
Query: 697 FIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSS 756
FI + K + L + N D+N S
Sbjct: 740 FINLINKFKELLKLPLC-------------FNKSDLNTLN-----------------SGE 769
Query: 757 LKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLV 816
LK++L ++ + +L YL + M+E+ER++L+
Sbjct: 770 LKKFLY---------QQFWISYDLKELYL--------------EQIGTGLMRELERSLLL 806
Query: 817 KTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESL 874
+ +D W++HL M+ L A+ RS+G ++PL EYK + FI+M++ R L + L
Sbjct: 807 QQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEAFNLFINMINHIRHLVIYDL 864
|
Length = 870 |
| >gnl|CDD|237257 PRK12902, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237259 PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|233212 TIGR00963, secA, preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
| >gnl|CDD|223726 COG0653, SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|237260 PRK12906, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|236408 PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|214937 smart00957, SecA_DEAD, SecA DEAD-like domain | Back alignment and domain information |
|---|
| >gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237253 PRK12898, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|219445 pfam07517, SecA_DEAD, SecA DEAD-like domain | Back alignment and domain information |
|---|
| >gnl|CDD|163426 TIGR03714, secA2, accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
| >gnl|CDD|183859 PRK13103, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237060 PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|183863 PRK13107, PRK13107, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|183860 PRK13104, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|234506 TIGR04221, SecA2_Mycobac, accessory Sec system translocase SecA2, Actinobacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237259 PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|233212 TIGR00963, secA, preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
| >gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237260 PRK12906, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|144583 pfam01043, SecA_PP_bind, SecA preprotein cross-linking domain | Back alignment and domain information |
|---|
| >gnl|CDD|214938 smart00958, SecA_PP_bind, SecA preprotein cross-linking domain | Back alignment and domain information |
|---|
| >gnl|CDD|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|219444 pfam07516, SecA_SW, SecA Wing and Scaffold domain | Back alignment and domain information |
|---|
| >gnl|CDD|236408 PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|223726 COG0653, SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|183859 PRK13103, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|183863 PRK13107, PRK13107, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|183860 PRK13104, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|163426 TIGR03714, secA2, accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
| >gnl|CDD|237253 PRK12898, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237060 PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|234506 TIGR04221, SecA2_Mycobac, accessory Sec system translocase SecA2, Actinobacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|237257 PRK12902, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|183860 PRK13104, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 890 | |||
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 100.0 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 100.0 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 100.0 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 100.0 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 100.0 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 100.0 | |
| PF07516 | 214 | SecA_SW: SecA Wing and Scaffold domain; InterPro: | 100.0 | |
| PF01043 | 113 | SecA_PP_bind: SecA preprotein cross-linking domain | 99.98 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.39 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.39 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.36 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.35 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.35 | |
| PTZ00110 | 545 | helicase; Provisional | 99.33 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.31 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.3 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 99.29 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 99.28 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.21 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.17 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.1 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 99.08 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.06 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.06 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 98.98 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 98.92 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 98.89 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 98.89 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 98.79 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 98.68 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 98.63 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 98.63 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 98.37 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 98.36 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 98.33 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 98.25 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 98.24 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 98.19 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 98.17 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 98.16 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 98.06 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 98.01 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 98.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 97.98 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 97.95 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 97.94 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 97.93 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 97.88 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 97.88 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 97.83 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 97.83 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 97.82 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 97.64 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 97.56 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 97.54 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 97.54 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 97.46 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 97.44 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 97.39 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 97.31 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 97.22 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 97.18 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 97.1 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 97.08 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 96.9 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 96.85 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 96.7 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 96.52 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 96.3 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 96.25 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 96.14 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 95.99 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 95.91 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 95.74 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 95.69 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 95.5 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 95.13 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 94.81 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 94.59 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 94.58 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 94.49 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 94.26 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 94.16 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 93.59 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 93.37 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 93.15 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 93.14 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 92.75 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 92.68 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 92.61 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 92.32 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 91.87 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 91.5 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 91.27 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 90.63 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 90.23 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 87.48 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 86.21 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 85.04 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 84.52 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 84.23 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 83.47 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 81.89 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 80.57 |
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-226 Score=1961.17 Aligned_cols=798 Identities=48% Similarity=0.769 Sum_probs=702.0
Q ss_pred CCCcchhHHHHHHhhcCCeeeccc-----------------------ceeccchhhhccHHHHHHHHHHhCCccccccCC
Q 002707 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 57 (890)
Q Consensus 1 mr~ydVQliGg~~L~~G~IaEMkT-----------------------VVT~NdyLA~RDae~m~~~y~~LGLsvg~i~~~ 57 (890)
||||||||+||+|||+|+||||+| |||||||||+||++||+|||+|||||||+|.++
T Consensus 84 ~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~ 163 (939)
T PRK12902 84 MRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQD 163 (939)
T ss_pred CCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCC
Confidence 899999999999999999999999 999999999999999999999999999999999
Q ss_pred CCHHHHhhccCCCCeeecCcchhhhHHhhhcccCcchhcccCCCCcceEEeccCCeeeecCCCCcccccCCCCCCCcchH
Q 002707 58 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 137 (890)
Q Consensus 58 ~~~~~rr~aY~~DItYgT~~efgFDyLRD~~~~~~~~~v~r~~R~~~~aIVDEvDSiLIDeArtpLiISg~~~~~~~~y~ 137 (890)
+++++||++|.||||||||++||||||||||+.+++++|+| +|+|||||||||||||||||||||||+...+...|.
T Consensus 164 ~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR---~~~faIVDEvDSILIDEArTPLIISg~~~~~~~~y~ 240 (939)
T PRK12902 164 MSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQR---PFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQ 240 (939)
T ss_pred CChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccC---ccceEEEecccceeeccCCCcccccCCCccchHHHH
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999998889999
Q ss_pred HHHHHHHHhcc------CCCeEEeCCCCeeeccHhhHHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcccCcceEEeC
Q 002707 138 VAAKVAELLVQ------GLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRN 211 (890)
Q Consensus 138 ~~~~~v~~l~~------~~~y~vd~~~k~v~Lte~G~~~~e~~~~~~~l~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d 211 (890)
.++.+++.|++ +.||.+|++.++|+||++|+.++|++++++|||++.++|.|||.+||+|+++|++|+||||+|
T Consensus 241 ~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYiV~d 320 (939)
T PRK12902 241 KAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDVNYIVRN 320 (939)
T ss_pred HHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 99999999987 779999999999999999999999999999999988899999999999999999999999999
Q ss_pred CeEEEEeCCCCccccCcccCchHHHHHHhHhCCccccCCeeEEEeechhHHhhcCccccccCCchhHHHHHHhhhCCCeE
Q 002707 212 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVI 291 (890)
Q Consensus 212 g~I~iVD~~TGR~~~gr~ws~GLHQalEaKEgv~It~e~~t~a~IT~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv 291 (890)
|+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+||||||||+|+||+||||||+|++.||+++|||+|+
T Consensus 321 g~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv 400 (939)
T PRK12902 321 GEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVT 400 (939)
T ss_pred CEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCcccccCCCcEEeChhHHHHHHHHHHHHhhhCCCcEEEEecchhhHHHHHHHHHhCCCCceEeccCCcchhhHH
Q 002707 292 EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA 371 (890)
Q Consensus 292 ~IPt~kp~~R~d~pd~i~~t~~~k~~AIi~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLNA~~k~~~~EA 371 (890)
+||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||.||+.||.||++|++.||||+||||++.|+++||
T Consensus 401 ~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA 480 (939)
T PRK12902 401 VIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREA 480 (939)
T ss_pred EcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999766889999
Q ss_pred HHHHhcCCCCcEEEEcCCCCCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHH
Q 002707 372 ETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLA 451 (890)
Q Consensus 372 ~IIa~AG~~G~VTIATNMAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (890)
+|||+||++|+||||||||||||||+|||||+++++..++..+.+......+..+.... ..+-..++.++++
T Consensus 481 ~IIa~AG~~GaVTIATNMAGRGTDIkLgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-- 552 (939)
T PRK12902 481 EIVAQAGRKGAVTIATNMAGRGTDIILGGNSDYMARLKLREYLMPRLVKPEDDHKPPVP------LQRGLKGGQGFGP-- 552 (939)
T ss_pred HHHHhcCCCCcEEEeccCCCCCcCEeeCCchhhhhhHHhhhhccccccccccccccccc------ccccccccccccc--
Confidence 99999999999999999999999999999999999988754433322222111100000 0001113334433
Q ss_pred HHHHHHhhhccccCCchhhhhhhhh---hhhhhhhhhhhhHHHHHHHH------------------hhhccCCCCChhhH
Q 002707 452 KAALLAKYVGKAEGKSWTYQEAKSF---FSESVEMSQSMNLKELQKLI------------------DKQSAMYPLGPTVA 510 (890)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~ 510 (890)
..+++.+.|+.+.+--+ +++.+..+....--.+++.. +......+....++
T Consensus 553 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (939)
T PRK12902 553 --------KAKKPKKTWKASSASIFPCELSEETEQLLKEAVDFAVKQYGDRSLPELELEDKIATAAEKAPTDDPVIQKLR 624 (939)
T ss_pred --------ccccccccccccccccccccccchhhhhhhhhhhhhhhhhcccccccccchhhhhhhhhcccccchhhhhHH
Confidence 25677889988765311 11111111110000111000 00111234455789
Q ss_pred HHHHhhhhhhcccccccchhhhhcCceEEEeccCCCchhhHhhhhcccccCCCCCceEEEEecCchhhhhccCCchHHHH
Q 002707 511 LTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVD 590 (890)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSLeD~l~~~f~~~~~~~~~ 590 (890)
.+|..++.+++..|.+++++|+++|||||||||||||||||||||||||||||||+|||||||||||||+|| ++++.+
T Consensus 625 ~~~~~~~~~~~~~~~~e~~~V~elGGL~VIGTERHESRRIDNQLRGRaGRQGDPGsSrFflSLEDdL~r~Fg--~dri~~ 702 (939)
T PRK12902 625 EAYNRIKKEYEVVTSQEHDEVVEAGGLHVIGTERHESRRVDNQLRGRAGRQGDPGSTRFFLSLEDNLLRIFG--GDRVAG 702 (939)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHcCCCeEEecCccccchHHHHhhcccccCCCCCcceEEEEechHHHHHhC--cHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHhcCCCCCCCccchhHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 002707 591 LISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAV 670 (890)
Q Consensus 591 ~~~~~~~~~~~~i~~~~~~~~i~~aQ~~vE~~~~~~Rk~l~~yd~v~~~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~ 670 (890)
+|+++++++++||++++++++|++||++||++||++||++++||+|||.||++||++|++||++ +++.+.|.+|++++
T Consensus 703 ~~~~l~~~e~~~I~~~~i~k~ie~AQkkvE~~nf~iRK~ll~YD~Vln~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~ 780 (939)
T PRK12902 703 LMNAFRVEEDMPIESGMLTRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEG--RDLKEQVIGYGEKT 780 (939)
T ss_pred HHHHcCCCCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999965 47999999999999
Q ss_pred HHHHHHhcCCCCCCCCccCHHHHHHHHHHHhchhhhhhhccCCccchhhhhhcccccccccccCCCCCCCCCCCcccccc
Q 002707 671 VDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGI 750 (890)
Q Consensus 671 i~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (890)
|+++|+.+..+...+++|++++|...+...+ .... .+++
T Consensus 781 i~~~v~~~~~~~~~~~~w~~~~l~~~l~~~~--~~~~---~~~~------------------------------------ 819 (939)
T PRK12902 781 MDEIVEAYVNPDLPPEEWDLDQLVSKVKEFV--YLLE---DLKP------------------------------------ 819 (939)
T ss_pred HHHHHHHhcCCccChhhccHHHHHHHHHHHh--cChh---hcCh------------------------------------
Confidence 9999999887665678899999887665321 0000 0000
Q ss_pred ccccchhhhhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002707 751 RRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQES-RYDDVYMKEVERAVLVKTLDCFWRDHLIN 829 (890)
Q Consensus 751 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~y~~k~~~~-~~~~~~~~~~ER~ilL~aID~~W~eHLd~ 829 (890)
++ ....+.+++++++.+.+...|..|+... ..+++.++++||.++|++||.+|++||++
T Consensus 820 ---------------~~-----~~~~~~~~l~~~l~~~~~~~y~~K~~~l~~~~~~~~~~~eR~i~L~~iD~~W~eHL~~ 879 (939)
T PRK12902 820 ---------------ED-----LEDLSVEELKAFLHEQLRIAYDLKEAQIDQIRPGLMREAERFFILQQIDTLWREHLQS 879 (939)
T ss_pred ---------------Hh-----hccCCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0112446789999999999997764432 12678999999999999999999999999
Q ss_pred HHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccCcc
Q 002707 830 MNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYWSSPM 882 (890)
Q Consensus 830 Md~LRegI~LRsYgQKDPL~EYkkEAf~lF~~M~~~I~~~iv~~L~~~~~~~~ 882 (890)
|++||+|||||+||||||+.|||+|||++|..|+.+|+.+++++||+++.++.
T Consensus 880 md~Lre~I~lR~ygQkdPl~EYk~Ea~~~F~~m~~~ir~~vv~~l~~~~~~~~ 932 (939)
T PRK12902 880 MDALRESVGLRGYGQKDPLIEYKNEGYEMFLEMMTNIRRNVVYSLFMFQPQPQ 932 (939)
T ss_pred HHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeccCC
Confidence 99999999999999999999999999999999999999999999999985544
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
| >PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
| >PF01043 SecA_PP_bind: SecA preprotein cross-linking domain; InterPro: IPR011130 The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane | Back alignment and domain information |
|---|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 890 | ||||
| 1nkt_A | 922 | Crystal Structure Of The Seca Protein Translocation | 1e-111 | ||
| 1nkt_A | 922 | Crystal Structure Of The Seca Protein Translocation | 3e-37 | ||
| 1m6n_A | 802 | Crystal Structure Of The Seca Translocation Atpase | 1e-109 | ||
| 1m6n_A | 802 | Crystal Structure Of The Seca Translocation Atpase | 6e-26 | ||
| 3dl8_A | 779 | Structure Of The Complex Of Aquifex Aeolicus Secyeg | 1e-109 | ||
| 3dl8_A | 779 | Structure Of The Complex Of Aquifex Aeolicus Secyeg | 7e-26 | ||
| 2ibm_A | 780 | A Novel Dimer Interface And Conformational Changes | 1e-109 | ||
| 2ibm_A | 780 | A Novel Dimer Interface And Conformational Changes | 8e-26 | ||
| 3jv2_A | 783 | Crystal Structure Of B. Subtilis Seca With Bound Pe | 1e-109 | ||
| 3jv2_A | 783 | Crystal Structure Of B. Subtilis Seca With Bound Pe | 8e-26 | ||
| 1tf2_A | 844 | Crystal Structure Of Seca:adp In An Open Conformati | 1e-109 | ||
| 1tf2_A | 844 | Crystal Structure Of Seca:adp In An Open Conformati | 1e-25 | ||
| 3iqm_A | 802 | Active Site Mutants Of B. Subtilis Seca Length = 80 | 1e-109 | ||
| 3iqm_A | 802 | Active Site Mutants Of B. Subtilis Seca Length = 80 | 5e-26 | ||
| 3iqy_A | 841 | Active Site Mutants Of B. Subtilis Seca Length = 84 | 1e-108 | ||
| 3iqy_A | 841 | Active Site Mutants Of B. Subtilis Seca Length = 84 | 8e-26 | ||
| 2ipc_A | 997 | Crystal Structure Of The Translocation Atpase Seca | 1e-103 | ||
| 2ipc_A | 997 | Crystal Structure Of The Translocation Atpase Seca | 2e-33 | ||
| 2ipc_A | 997 | Crystal Structure Of The Translocation Atpase Seca | 6e-08 | ||
| 3din_A | 871 | Crystal Structure Of The Protein-Translocation Comp | 1e-100 | ||
| 3din_A | 871 | Crystal Structure Of The Protein-Translocation Comp | 2e-25 | ||
| 3jux_A | 822 | Structure Of The Translocation Atpase Seca From The | 1e-100 | ||
| 3jux_A | 822 | Structure Of The Translocation Atpase Seca From The | 2e-25 | ||
| 2fsf_A | 853 | Escherichia Coli Seca, The Preprotein Translocase D | 4e-98 | ||
| 2fsf_A | 853 | Escherichia Coli Seca, The Preprotein Translocase D | 3e-27 | ||
| 2vda_A | 828 | Solution Structure Of The Seca-Signal Peptide Compl | 4e-98 | ||
| 2vda_A | 828 | Solution Structure Of The Seca-Signal Peptide Compl | 4e-26 | ||
| 2fsg_A | 853 | Complex Seca:atp From Escherichia Coli Length = 853 | 1e-94 | ||
| 2fsg_A | 853 | Complex Seca:atp From Escherichia Coli Length = 853 | 2e-22 | ||
| 3bxz_A | 471 | Crystal Structure Of The Isolated Dead Motor Domain | 7e-36 | ||
| 3bxz_A | 471 | Crystal Structure Of The Isolated Dead Motor Domain | 1e-14 |
| >pdb|1NKT|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase From Mycobacterium Tuberculosis Complex With Adpbs Length = 922 | Back alignment and structure |
|
| >pdb|1NKT|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase From Mycobacterium Tuberculosis Complex With Adpbs Length = 922 | Back alignment and structure |
| >pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From Bacillus Subtilis Length = 802 | Back alignment and structure |
| >pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From Bacillus Subtilis Length = 802 | Back alignment and structure |
| >pdb|3DL8|A Chain A, Structure Of The Complex Of Aquifex Aeolicus Secyeg And Bacillus Subtilis Seca Length = 779 | Back alignment and structure |
| >pdb|3DL8|A Chain A, Structure Of The Complex Of Aquifex Aeolicus Secyeg And Bacillus Subtilis Seca Length = 779 | Back alignment and structure |
| >pdb|2IBM|A Chain A, A Novel Dimer Interface And Conformational Changes Revealed By An X- Ray Structure Of B. Subtilis Seca Length = 780 | Back alignment and structure |
| >pdb|2IBM|A Chain A, A Novel Dimer Interface And Conformational Changes Revealed By An X- Ray Structure Of B. Subtilis Seca Length = 780 | Back alignment and structure |
| >pdb|3JV2|A Chain A, Crystal Structure Of B. Subtilis Seca With Bound Peptide Length = 783 | Back alignment and structure |
| >pdb|3JV2|A Chain A, Crystal Structure Of B. Subtilis Seca With Bound Peptide Length = 783 | Back alignment and structure |
| >pdb|1TF2|A Chain A, Crystal Structure Of Seca:adp In An Open Conformation From Bacillus Subtilis Length = 844 | Back alignment and structure |
| >pdb|1TF2|A Chain A, Crystal Structure Of Seca:adp In An Open Conformation From Bacillus Subtilis Length = 844 | Back alignment and structure |
| >pdb|3IQM|A Chain A, Active Site Mutants Of B. Subtilis Seca Length = 802 | Back alignment and structure |
| >pdb|3IQM|A Chain A, Active Site Mutants Of B. Subtilis Seca Length = 802 | Back alignment and structure |
| >pdb|3IQY|A Chain A, Active Site Mutants Of B. Subtilis Seca Length = 841 | Back alignment and structure |
| >pdb|3IQY|A Chain A, Active Site Mutants Of B. Subtilis Seca Length = 841 | Back alignment and structure |
| >pdb|2IPC|A Chain A, Crystal Structure Of The Translocation Atpase Seca From Thermus Thermophilus Reveals A Parallel, Head-To-Head Dimer Length = 997 | Back alignment and structure |
| >pdb|2IPC|A Chain A, Crystal Structure Of The Translocation Atpase Seca From Thermus Thermophilus Reveals A Parallel, Head-To-Head Dimer Length = 997 | Back alignment and structure |
| >pdb|2IPC|A Chain A, Crystal Structure Of The Translocation Atpase Seca From Thermus Thermophilus Reveals A Parallel, Head-To-Head Dimer Length = 997 | Back alignment and structure |
| >pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex Formed By The Secy Channel And The Seca Atpase Length = 871 | Back alignment and structure |
| >pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex Formed By The Secy Channel And The Seca Atpase Length = 871 | Back alignment and structure |
| >pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga Maritima Length = 822 | Back alignment and structure |
| >pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga Maritima Length = 822 | Back alignment and structure |
| >pdb|2FSF|A Chain A, Escherichia Coli Seca, The Preprotein Translocase Dimeric Atpase Length = 853 | Back alignment and structure |
| >pdb|2FSF|A Chain A, Escherichia Coli Seca, The Preprotein Translocase Dimeric Atpase Length = 853 | Back alignment and structure |
| >pdb|2VDA|A Chain A, Solution Structure Of The Seca-Signal Peptide Complex Length = 828 | Back alignment and structure |
| >pdb|2VDA|A Chain A, Solution Structure Of The Seca-Signal Peptide Complex Length = 828 | Back alignment and structure |
| >pdb|2FSG|A Chain A, Complex Seca:atp From Escherichia Coli Length = 853 | Back alignment and structure |
| >pdb|2FSG|A Chain A, Complex Seca:atp From Escherichia Coli Length = 853 | Back alignment and structure |
| >pdb|3BXZ|A Chain A, Crystal Structure Of The Isolated Dead Motor Domains From Escherichia Coli Seca Length = 471 | Back alignment and structure |
| >pdb|3BXZ|A Chain A, Crystal Structure Of The Isolated Dead Motor Domains From Escherichia Coli Seca Length = 471 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Length = 997 | Back alignment and structure |
|---|
Score = 831 bits (2149), Expect = 0.0
Identities = 316/935 (33%), Positives = 468/935 (50%), Gaps = 114/935 (12%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDA 37
MRHFDVQ+IGGAVLH+G IAEMKT VVTVNDYLA+RDA
Sbjct: 78 MRHFDVQLIGGAVLHEGKIAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDA 137
Query: 38 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 97
EWM V+R LGLSVG+IQ P ERR Y D+TY NSELGFDYLRDN+A + +QLV+
Sbjct: 138 EWMGPVYRGLGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVL 197
Query: 98 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGL------- 150
R P H+AI+DEVDS+LIDE R PL+ISG A K Y A++A+ L +GL
Sbjct: 198 RHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVR 257
Query: 151 -----HYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRD 204
YTVE KN SV LT +GIA AE L L+ EN A ++ A++AKE Y RD
Sbjct: 258 KEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRD 317
Query: 205 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKL 264
YIV++G+ +I++E TGR+ RR+ EG+HQA+EAKEG++I+ ++ +A ITYQ+ F+L
Sbjct: 318 RDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRL 377
Query: 265 YPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVE 324
Y K +GMTGTAKTEEKEF +++ M V+ VPTN P IR D P + T +GK+ +E+
Sbjct: 378 YEKRAGMTGTAKTEEKEFQEIYGMDVVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIA 437
Query: 325 SMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP--------KYAAREAETVAQ 376
+ G+PVLVG+ S+E SE LS +LK+ + L R K E E + +
Sbjct: 438 EKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRK 497
Query: 377 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKV 436
+ A ++A I GN + + + L + R+ + +V + +
Sbjct: 498 LLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHHARE 557
Query: 437 LSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFF---SESVEMSQSMNLKELQ 493
+ S + + + G + Y A + E + +K++
Sbjct: 558 AEIVAQAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMV 617
Query: 494 KLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQ 553
++++ + L +++ C + V+ LGGL +IGT HESRRIDNQ
Sbjct: 618 AGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQ 677
Query: 554 LRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLL 613
LRGRAGRQGDPG +RF VS D++ + F+ D + ++ R+ D+ PIE + R +
Sbjct: 678 LRGRAGRQGDPGGSRFYVSFDDDLMRLFASD--RVIAMLDRMGFDDSEPIEHPMVTRSIE 735
Query: 614 GLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDE 673
Q E F IRK L++FD+VL QR+ +Y R+ IL G +E + ++ V
Sbjct: 736 RAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLGKDEEVKEAAIGMVEETVAS 795
Query: 674 IIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDIN 733
+ ++P HP W L + L A + EL ++
Sbjct: 796 LAENFLNPEVHPEDWDL---------------EGLKATLLDTAPQLQDFPFAELRALKAE 840
Query: 734 NFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASY 793
+ L + + +Y
Sbjct: 841 E----------------------------------------------AVERLVEAALKAY 854
Query: 794 LNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKI 853
+E+ M+ VER V++ +D W++HL N++ L + +R +G ++P +EYKI
Sbjct: 855 EA--REAELSPPLMRAVERFVILNVVDNAWKEHLHNLDVLRQGIFLRGYGQKDPFQEYKI 912
Query: 854 DGCRFFISMLSATRRLTVESL--VQYWSSPMESQE 886
+ R F M++ + + L ++ + P+
Sbjct: 913 EATRLFNEMVAFIKSEVAKFLFRLKVEAEPVRPVR 947
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Length = 922 | Back alignment and structure |
|---|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Length = 922 | Back alignment and structure |
|---|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Length = 844 | Back alignment and structure |
|---|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Length = 844 | Back alignment and structure |
|---|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Length = 853 | Back alignment and structure |
|---|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Length = 853 | Back alignment and structure |
|---|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Length = 822 | Back alignment and structure |
|---|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Length = 822 | Back alignment and structure |
|---|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Length = 822 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 890 | ||||
| d1nkta3 | 288 | c.37.1.19 (A:-15-225,A:350-396) Translocation ATPa | 3e-36 | |
| d1nkta3 | 288 | c.37.1.19 (A:-15-225,A:350-396) Translocation ATPa | 2e-16 | |
| d1tf5a1 | 122 | a.162.1.1 (A:227-348) Pre-protein crosslinking dom | 5e-32 | |
| d1tf5a3 | 273 | c.37.1.19 (A:1-226,A:349-395) Translocation ATPase | 1e-31 | |
| d1tf5a3 | 273 | c.37.1.19 (A:1-226,A:349-395) Translocation ATPase | 4e-20 | |
| d1nkta1 | 124 | a.162.1.1 (A:226-349) Pre-protein crosslinking dom | 2e-30 | |
| d1nkta4 | 219 | c.37.1.19 (A:397-615) Translocation ATPase SecA, n | 3e-30 | |
| d1nkta4 | 219 | c.37.1.19 (A:397-615) Translocation ATPase SecA, n | 3e-23 | |
| d1tf5a4 | 175 | c.37.1.19 (A:396-570) Translocation ATPase SecA, n | 2e-22 | |
| d1tf5a4 | 175 | c.37.1.19 (A:396-570) Translocation ATPase SecA, n | 2e-22 | |
| d1nkta2 | 220 | a.172.1.1 (A:616-835) Helical scaffold and wing do | 7e-20 | |
| d1tf5a2 | 210 | a.172.1.1 (A:571-780) Helical scaffold and wing do | 2e-12 |
| >d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 136 bits (343), Expect = 3e-36
Identities = 81/151 (53%), Positives = 98/151 (64%), Gaps = 26/151 (17%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKT-----------------------VVTVNDYLAQRDA 37
R FDVQ++G A LH G++AEMKT +VTVNDYLA+RD+
Sbjct: 96 QRPFDVQVMGAAALHLGNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDS 155
Query: 38 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 97
EWM RVHRFLGL VG+I M P+ERR Y DITY N+E GFDYLRDN+A + + LV
Sbjct: 156 EWMGRVHRFLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQ 215
Query: 98 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 128
R H+AIVDEVDS+LIDE R PL+IS +
Sbjct: 216 RG---HHYAIVDEVDSILIDEARTPLIISNQ 243
|
| >d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
| >d1tf5a1 a.162.1.1 (A:227-348) Pre-protein crosslinking domain of SecA {Bacillus subtilis [TaxId: 1423]} Length = 122 | Back information, alignment and structure |
|---|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 273 | Back information, alignment and structure |
|---|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 273 | Back information, alignment and structure |
|---|
| >d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of SecA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 124 | Back information, alignment and structure |
|---|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Length = 219 | Back information, alignment and structure |
|---|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Length = 219 | Back information, alignment and structure |
|---|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 175 | Back information, alignment and structure |
|---|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 175 | Back information, alignment and structure |
|---|
| >d1nkta2 a.172.1.1 (A:616-835) Helical scaffold and wing domains of SecA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 220 | Back information, alignment and structure |
|---|
| >d1tf5a2 a.172.1.1 (A:571-780) Helical scaffold and wing domains of SecA {Bacillus subtilis [TaxId: 1423]} Length = 210 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 890 | |||
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 100.0 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 100.0 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 100.0 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 100.0 | |
| d1nkta2 | 220 | Helical scaffold and wing domains of SecA {Mycobac | 100.0 | |
| d1tf5a2 | 210 | Helical scaffold and wing domains of SecA {Bacillu | 100.0 | |
| d1nkta1 | 124 | Pre-protein crosslinking domain of SecA {Mycobacte | 100.0 | |
| d1tf5a1 | 122 | Pre-protein crosslinking domain of SecA {Bacillus | 100.0 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.04 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.03 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 98.85 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 98.78 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 98.75 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 98.71 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 98.6 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 98.52 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 98.42 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.19 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 98.17 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 97.98 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 97.78 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 97.67 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 97.67 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 97.66 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 97.64 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 97.3 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 97.27 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 97.25 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 96.8 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 94.99 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 94.91 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 94.11 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 93.64 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 93.49 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 91.85 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 91.84 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 91.53 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 91.49 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 88.86 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 85.97 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 82.44 |
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=579.36 Aligned_cols=219 Identities=46% Similarity=0.704 Sum_probs=197.6
Q ss_pred CCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHH
Q ss_conf 98553228980894933799999999998452799699982433238999999995799805841698540208999986
Q 002707 297 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 376 (890)
Q Consensus 297 kp~~R~d~pd~i~~t~~~k~~aii~ei~~~~~~grPVLIgt~sI~~SE~ls~~L~~~gi~h~vLna~~k~~~~Ea~IIa~ 376 (890)
.|++|+|+||.||.|..+||+||+++|.++|.+||||||||.||+.||.||.+|++.||+|+|||| |||++||+|||+
T Consensus 1 lP~iR~D~~D~Vy~T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNA--K~herEAeIIAq 78 (219)
T d1nkta4 1 MPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNA--KYHEQEATIIAV 78 (219)
T ss_dssp SCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECS--SCHHHHHHHHHT
T ss_pred CCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCHHCCCH--HHHHHHHHHHHH
T ss_conf 997614799807747899999999999999966998899617599999999999872534322410--468888899996
Q ss_pred CCCCCCEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 29988599981788789420049971477899999999888764201222456789940134542023047999999998
Q 002707 377 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 456 (890)
Q Consensus 377 AG~~G~VTIATNMAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (890)
||++|+||||||||||||||+||||++++++..+.........
T Consensus 79 AG~~GaVTIATNMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~------------------------------------- 121 (219)
T d1nkta4 79 AGRRGGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVE------------------------------------- 121 (219)
T ss_dssp TTSTTCEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTT-------------------------------------
T ss_pred CCCCCCEEEECCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCC-------------------------------------
T ss_conf 4668837962000478776464686015567776541467312-------------------------------------
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCCC
Q ss_conf 75513446773023322100024566654443899998873202579997146888886642100123444123552386
Q 002707 457 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 536 (890)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 536 (890)
..+ ....++...+..+++.|..++++|+++||
T Consensus 122 -------------------------------~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 153 (219)
T d1nkta4 122 -------------------------------TPE-----------------EYEAAWHSELPIVKEEASKEAKEVIEAGG 153 (219)
T ss_dssp -------------------------------SHH-----------------HHHHHHHHHHHHHHHHTTHHHHHHHHTTS
T ss_pred -------------------------------CHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf -------------------------------878-----------------99999987778889988877777774499
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 28993158982236765201224589999347998657235541158914799999752999998755
Q 002707 537 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIE 604 (890)
Q Consensus 537 L~VIgTerheS~RID~QLrGRaGRQGdPGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~ 604 (890)
|||||||||||||||||||||||||||||||+|||||||+||++|+ ++++.++|.++++++++||+
T Consensus 154 L~VIGTErHeSrRIDnQLRGRsGRQGDPGsSrFflSLeDdLmr~F~--~~~i~~lm~~l~~~e~~~Ie 219 (219)
T d1nkta4 154 LYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFN--GAALETLLTRLNLPDDVPIE 219 (219)
T ss_dssp EEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTT--HHHHHHHHHHTTCCTTSCCC
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHC--HHHHHHHHHHCCCCCCCCCC
T ss_conf 6798425566555553302666456897512567744679999878--39999999971999999899
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1nkta2 a.172.1.1 (A:616-835) Helical scaffold and wing domains of SecA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1tf5a2 a.172.1.1 (A:571-780) Helical scaffold and wing domains of SecA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of SecA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1tf5a1 a.162.1.1 (A:227-348) Pre-protein crosslinking domain of SecA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|