Citrus Sinensis ID: 002714

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------89
MMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKTFEVVKPRLPIINISSLKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGETRQSSGSCPGYPYFLTVLQAS
cccccHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccEEEcccEEEEEEEEEccccccEEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccEEEEEEEEEEcEEEEEEEEEEEEEEccccEEEEEEEcccccccccccccccccccccccEEEEEEccccEEEEEEccccccccccEEEEEEEEEEcccccccEEEEEEccccEEEEcccccccccccHHcccccccccccccccccccccEEEcccccccccccccEEEEEEEEcccccEEEEEEEEEEEEccccccccEEEEEEEEEEEEEEcEEEEEEEEEcccccccEEEEEEEEEcccccEEEEEEEEEEEccEEEEEEccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccEEEEEccccccccccccccccEEEEEccccccccccccEEccccccEEccccccccccccccccccccccccEEEEEEcccccccccccccccccEEEcccccccccccccEEEccEEccccccccccccccccccccEEEEEcccEEEEEccccEEEEEEEEEEEEccEEEccccEEEEEEEccccccccccccccccccccccEEEEEEEcc
cHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccEEcccccccEccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEcccEEEEEEEEEcccccEEEEccEEEEEEEccccccccccccccccccccccHcccccccccccccccEEEEEEEEEEEccccEEEEEEEEEEcccEEEEEEEEEEEEEccccccEEEccccccccccccccccEccccccEEEEEcccccEEEEEEEcccHHHccccEEEEEEEEEEcccccccEEEEEEccccEEEEcccccccccccHHHccccccccccccccccccccEEEEcccccccccccEEEEEEEEEccccccEEEEEEEEEEccccccccEEEEEEEEEEEEEEccEEEEEEEEEcccccccEEEEEEEEEcccccEEEEEEEEEEcccEEEEEccccccccccccccccHHEEEEEEcccccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHcccccccccEEEEEEEEEEcccccccccccccHHHHHHHHHHccccccccccccccccccccHHccccccccEEEEcccHHHHHEEEEEcccccccccccccEEEEEEEEEEccccccEcEEEEEEcEcccccccccccccccccccccEEEEEcEEEEEEEccccEEEEEEEEEEEcccEEEcccEEEEEEEcccccccccccccccccccccccEEEEEEEcc
MMGLTYFMLDQSRKEAEYCMENAFTTYAKIgssgqqnatrCGLWWVEMLKARHQYKDAATVYFRIcgeeplhsAVMLEQASYcyllskppmlhkygfhlvlsgdrykkcdQINHAIRTYRSAVSVykgstwshikdHVHFHIGQWYAVLGMHDIAVAHMLEKTgktfevvkprlpiinisslKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEesnicvagepvkvdiefknplqipisisnISLICElstrsdemesdsnssttelqndEESKLLTttgemnsdtssfTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAkgrrkvksspsndlKFIVIKSlpkleglihplperayaGDLRHLVLELKnqsdfsvknlkmkvshprflsignrddmtkEFPACLQKMTNaeqsvaggnfnkmpqavfsfpegisiqgetpllwplwyraavpgkisLSITIYYEMGDVSSVIKYRLLRMHYnlevlpslnvsfqispwsSRLQQYLVRMDVVnqtssenfqihqlssvghqweisllqpfdsifpseslfagqALSCFFMLknrgesstssddtsspsrllgsdvslqgtadtlfdisgspladfhAHERLLQRvsqddtntvdfifisqpsksdsdsgisdpqhlfshhachcsilgktpitwlvdgprtlhhnfnasfceVNLKMTIYNSSDAAMFVRVntfdspsssgqtseatsprsavpsgnqagwhdvpvltdikvtsqlplnqvkrssllesvspfiwsgssassvrlqpmsttdiamkvclfspgtydlsnyALNWKLLTisgqgnegetrqssgscpgypyFLTVLQAS
MMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKtfevvkprlpiinisslkVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNplqipisisnISLICELSTRSdemesdsnssttelqndeESKLLTTtgemnsdtsSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGvynfesnlvkkkiakgrrkvksspsndlkfiVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQsdfsvknlkmkvshprflsignrdDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESstssddtsspsrlLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLEsvspfiwsgssassVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGetrqssgscpgypYFLTVLQAS
MMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKTFEVVKPRLPIINISSLKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLvkkkiakgrrkvkSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGEsstssddtsspsRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGETRQSSGSCPGYPYFLTVLQAS
****TYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKTFEVVKPRLPIINISSLKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICEL****************************************TLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIA************DLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGN*******FPACLQ**********GGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFML******************************DTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFI****************HLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNT**************************GWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSG**********MSTTDIAMKVCLFSPGTYDLSNYALNWKLLTIS***************PGYPYFLTVL***
MMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAH**************RLPIINISSLKVIF*****************LWRSLEEDMIPSLSTA**********************VAGEPVKVDIEFKNPLQIPISISNISLICELSTR******************************NSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNF**********************DLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTK***************************VFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDV**VIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQ***********FAGQALSCFFMLKN*************PSRLLGSDVSLQG**********************************DFIFISQPS************HLFSHHACHCSILGKTPITWLVDGP*******************IYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTD***********************FIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNW************************PYFLTVLQA*
MMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKTFEVVKPRLPIINISSLKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELS**********************SKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKI************NDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNR***************LLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQ***********DPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTF**********************NQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQ***********SCPGYPYFLTVLQAS
MM*LTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKTFEVVKPRLPIINISSLKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRS******************************SDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLV*********KVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSV***NFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNR*********TSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTS**************SVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTI***************CPGYPYFLTVLQA*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKTFEVVKPRLPIINISSLKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGETRQSSGSCPGYPYFLTVLQAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query889 2.2.26 [Sep-21-2011]
Q9Y2L51435 Trafficking protein parti yes no 0.709 0.439 0.259 4e-37
>sp|Q9Y2L5|TPPC8_HUMAN Trafficking protein particle complex subunit 8 OS=Homo sapiens GN=TRAPPC8 PE=1 SV=2 Back     alignment and function desciption
 Score =  157 bits (397), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 203/781 (25%), Positives = 332/781 (42%), Gaps = 150/781 (19%)

Query: 20   MENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLE 78
            M+ A  TY  I       A RC L   E+LK++ +Y +AA +  R+  E+  L SA++LE
Sbjct: 485  MDTAIQTYRDI-CKNMVLAERCVLLSAELLKSQSKYSEAAALLIRLTSEDSDLRSALLLE 543

Query: 79   QASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHV 138
            QA++C++  K PM+ KY FH++L+G R+ K  Q  HA+R Y  A+ VYKG  WS  +DH+
Sbjct: 544  QAAHCFINMKSPMVRKYAFHMILAGHRFSKAGQKKHALRCYCQAMQVYKGKGWSLAEDHI 603

Query: 139  HFHIGQWYAVLGMHDIAVA---HMLEKTGKT------------FEVVK-----------P 172
            +F IG+    L   D AV+   H+L    K               V K           P
Sbjct: 604  NFTIGRQSYTLRQLDNAVSAFRHILINESKQSAAQQGAFLREYLYVYKNVSQLSPDGPLP 663

Query: 173  RLPI--INISSLKVIFEDHRTYASAEA-ANVRESL-----------WRSLEEDMIPSLST 218
            +LP+  IN S+ +V F   R  A  E  A    SL           WR LEE ++  ++ 
Sbjct: 664  QLPLPYINSSATRVFFGHDRRPADGEKQAATHVSLDQEYDSESSQQWRELEEQVVSVVNK 723

Query: 219  A--RSNWLELQSKLIMKKFEESN---ICVAGEPVKVDIEFKNPLQIPISISNISLICELS 273
                SN+   Q    +  + +++   + V  EP+ V++ F+NPL++ + ++++SL+ +  
Sbjct: 724  GVIPSNFHPTQ--YCLNSYSDNSRFPLAVVEEPITVEVAFRNPLKVLLLLTDLSLLWKFH 781

Query: 274  TRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMV 333
             + D    D         N+E  +L+T+  EM     +  +SE  I+  G E+ + +L +
Sbjct: 782  PK-DFSGKD---------NEEVKQLVTSEPEM---IGAEVISEFLIN--GEESKVARLKL 826

Query: 334  TPKVEGILKIVGVRWRLS-----------GSLVGVYNFESNL---VKKK----------- 368
             P   G L I+GV + L            G+L G +  + +L   V+ K           
Sbjct: 827  FPHHIGELHILGVVYNLGTIQGSMTVDGIGALPGCHTGKYSLSMSVRGKQDLEIQGPRLN 886

Query: 369  -IAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVK 427
               + +  VK  P   L  I+ + +P LE      P     G++R   +E  N S   + 
Sbjct: 887  NTKEEKTSVKYGPDRRLDPIITEEMPLLEVFFIHFPTGLLCGEIRKAYVEFVNVSKCPLT 946

Query: 428  NLKMKVSHPRFLSIGN-------------------RDDMTKEFPACLQKMTNAEQSVAGG 468
             LK+    P F + G                    +  +T     C   +++A     G 
Sbjct: 947  GLKVVSKRPEFFTFGGNTAVLTPLSPSASENCSAYKTVVTDATSVCTALISSASSVDFGI 1006

Query: 469  NFNKMPQAV-FSFPEGISIQGETPLLWPLWYRAA-VPGKISLSITIYYEMGDVSSVIKYR 526
                 P+ +    P+ + + G +  L P+W R     G   ++   YYE       I++R
Sbjct: 1007 GTGSQPEVIPVPLPDTVLLPGASVQL-PMWLRGPDEEGVHEINFLFYYESVKKQPKIRHR 1065

Query: 527  LLRMHYNLEVLPSLNVSFQISPWSS------RLQQYLVRMDVVNQTSSE----NFQIHQL 576
            +LR    +    SLNV   +   +S      R    LV +DV N  +SE     F I Q+
Sbjct: 1066 ILRHTAIICTSRSLNVRATVCRSNSLENEEGRGGNMLVFVDVENTNTSEAGVKEFHIVQV 1125

Query: 577  SSVGHQWE----ISLLQPFDSIFPS--ESLFAGQALSCFFMLKNRGESST-SSDDTSSPS 629
            SS    W+    ++L +  D+   S  +  F  +A+ C      + E++T SS+  +   
Sbjct: 1126 SSSSKHWKLQKSVNLSENKDTKLASREKGKFCFKAIRC-----EKEEAATQSSEKYTFAD 1180

Query: 630  RLLGSD---VSLQGTADTLFDISGSPLADFHAH-------------ERLLQRVSQDDTNT 673
             + G++    S    AD  +    S L    AH              RL+Q+ S+ D N 
Sbjct: 1181 IIFGNEQIISSASPCADFFYRSLSSELKKPQAHLPVHTEKQSTEDAVRLIQKCSEVDLNI 1240

Query: 674  V 674
            V
Sbjct: 1241 V 1241
May be involved in endoplasmic reticulum to Golgi apparatus trafficking at a very early stage.
Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query889
255566159 1284 conserved hypothetical protein [Ricinus 0.964 0.667 0.661 0.0
296089365 1262 unnamed protein product [Vitis vinifera] 0.982 0.691 0.643 0.0
359481103 1289 PREDICTED: trafficking protein particle 0.982 0.677 0.643 0.0
356503854 1289 PREDICTED: trafficking protein particle 0.987 0.681 0.615 0.0
449437874 1288 PREDICTED: trafficking protein particle 0.992 0.684 0.609 0.0
356572633 1257 PREDICTED: trafficking protein particle 0.987 0.698 0.611 0.0
356572629 1283 PREDICTED: trafficking protein particle 0.987 0.684 0.611 0.0
356572631 1254 PREDICTED: trafficking protein particle 0.969 0.687 0.596 0.0
297811763 1249 binding protein [Arabidopsis lyrata subs 0.969 0.690 0.573 0.0
334187710 1272 uncharacterized protein [Arabidopsis tha 0.966 0.675 0.564 0.0
>gi|255566159|ref|XP_002524067.1| conserved hypothetical protein [Ricinus communis] gi|223536635|gb|EEF38277.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1217 bits (3148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/892 (66%), Positives = 704/892 (78%), Gaps = 35/892 (3%)

Query: 1    MMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAAT 60
            MMGL YFMLDQSRKEAEYCMENAF+TY K+G SGQQNA RCGLWWVEMLK R QYK+AA 
Sbjct: 380  MMGLAYFMLDQSRKEAEYCMENAFSTYLKMGLSGQQNAVRCGLWWVEMLKTRDQYKEAAA 439

Query: 61   VYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 120
            VYFRIC EE LHSAVMLEQASYCYLLS+PPMLHKYGFHLVLSGDRY+KCDQI HAIRTYR
Sbjct: 440  VYFRICSEEILHSAVMLEQASYCYLLSQPPMLHKYGFHLVLSGDRYRKCDQIKHAIRTYR 499

Query: 121  SAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE------------------- 161
            SA+SVYKG+TWS+IKDHV+FHIGQWYA LGM+D+AV HMLE                   
Sbjct: 500  SAISVYKGTTWSYIKDHVYFHIGQWYAFLGMYDVAVTHMLEVLTCSHQSKTTQELFLQEF 559

Query: 162  -----KTGKTFEVVKPRLPIINISSLKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSL 216
                 KTGKTFE ++ +LP+INISSLK++FEDHRTYAS   A+VRES+WRSLEEDMIPSL
Sbjct: 560  LQIVQKTGKTFEALRLQLPVINISSLKLVFEDHRTYASPAVASVRESVWRSLEEDMIPSL 619

Query: 217  STARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRS 276
            S A+SNWLELQSK++ K F+++NICVAGE +KV IEF+NPL+IPIS+S++SLICELS  S
Sbjct: 620  SAAKSNWLELQSKVVPKSFKDANICVAGEAIKVRIEFQNPLKIPISLSSVSLICELSG-S 678

Query: 277  DEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPK 336
            D+M SD+ SS TE QNDEE K L   G++ SD S FTLSE D +L G E ILV L VTPK
Sbjct: 679  DDMNSDAGSSATEHQNDEECKKL---GDLTSDNSLFTLSEADFTLEGDEKILVHLTVTPK 735

Query: 337  VEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLE 396
            VEG LKIVG+RW+LSGS++G YN ESNLVK KI KGRRK K SP + LKFIVIK+LPKLE
Sbjct: 736  VEGSLKIVGIRWKLSGSVLGYYNLESNLVKGKITKGRRKAKHSPKSYLKFIVIKNLPKLE 795

Query: 397  GLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQ 456
            G+IH LPE+AYAGDLRHLVLEL+NQS+FSVKNLKMK+S+PRF+SIGN +D+  E P CL+
Sbjct: 796  GIIHSLPEKAYAGDLRHLVLELRNQSEFSVKNLKMKISNPRFMSIGNGEDLNCEIPECLE 855

Query: 457  KMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEM 516
            K T  EQ     +  K    +F FPE ISI+ E PL WPLW RAAVPGKISL + +YYEM
Sbjct: 856  KKTEFEQISVPADSKKELHDIFVFPEDISIEREKPLSWPLWLRAAVPGKISLYMVVYYEM 915

Query: 517  GDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQL 576
            GD SS+++YR LRM Y+L+VLPSL++SF ISP  SRLQ++LVRMD+VN+TSSE+FQ++QL
Sbjct: 916  GDASSIMRYRTLRMQYDLQVLPSLDLSFAISPCPSRLQEFLVRMDLVNKTSSESFQVNQL 975

Query: 577  SSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDV 636
            S VGHQWEISLLQP D+IFPS+SL AGQA SCFFMLK+R +S  + +   S SR  GSDV
Sbjct: 976  SCVGHQWEISLLQPPDAIFPSQSLIAGQAFSCFFMLKSRRKSLGTGEKILSLSRFPGSDV 1035

Query: 637  SL--QGTADTLFDISGSPLADFHAHERLLQRVS-QDDTNTVDFIFISQPSKSDSDSGISD 693
             L  + + +TLFDIS SPLADFH +ERL    S Q+  NTVD I IS+P KSD+ +GIS+
Sbjct: 1036 RLTPEDSKNTLFDISSSPLADFHDYERLQHETSNQESVNTVDLILISRPLKSDNATGISN 1095

Query: 694  PQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVN 753
            P HLFSHHACHCS    +PI+W+VDGPR   H F+ASFCEVNL+M +YNSSDA   V +N
Sbjct: 1096 PPHLFSHHACHCSTASTSPISWIVDGPRFRRHKFSASFCEVNLRMLVYNSSDAVASVAIN 1155

Query: 754  TFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSP 813
            T DS S +GQ S+A    SAV S NQ GWH + +  DIK+ S +P   V R    ESVSP
Sbjct: 1156 TLDSTSGNGQLSDA----SAVTSRNQTGWHHLSLENDIKIISDVPETNVARLQSPESVSP 1211

Query: 814  FIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGN 865
            FIWSGSS++ ++L+P+S+T+I +++C+FSPGTYDLSNY LNW L  ++ +GN
Sbjct: 1212 FIWSGSSSTRIQLEPLSSTEIPLQICVFSPGTYDLSNYVLNWNLQPVNNEGN 1263

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296089365|emb|CBI39137.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359481103|ref|XP_002263641.2| PREDICTED: trafficking protein particle complex subunit 8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356503854|ref|XP_003520717.1| PREDICTED: trafficking protein particle complex subunit 8-like [Glycine max] Back     alignment and taxonomy information
>gi|449437874|ref|XP_004136715.1| PREDICTED: trafficking protein particle complex subunit 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356572633|ref|XP_003554472.1| PREDICTED: trafficking protein particle complex subunit 8-like isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|356572629|ref|XP_003554470.1| PREDICTED: trafficking protein particle complex subunit 8-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356572631|ref|XP_003554471.1| PREDICTED: trafficking protein particle complex subunit 8-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|297811763|ref|XP_002873765.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297319602|gb|EFH50024.1| binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|334187710|ref|NP_197132.2| uncharacterized protein [Arabidopsis thaliana] gi|332004885|gb|AED92268.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query889
FB|FBgn02606551319 l(3)76BDm "lethal (3) 76BDm" [ 0.177 0.119 0.393 1.4e-38
UNIPROTKB|Q9Y2L51435 TRAPPC8 "Trafficking protein p 0.166 0.103 0.402 1.2e-33
FB|FBgn0260655 l(3)76BDm "lethal (3) 76BDm" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 278 (102.9 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
 Identities = 65/165 (39%), Positives = 95/165 (57%)

Query:     1 MMGLTYFMLDQS-RKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAA 59
             M  L+ FML  + RK  +Y ME+A   Y  +    QQ ATR  L  +E LK    Y + A
Sbjct:   470 MAALSAFMLGTAQRKTYDY-MEDAIVCYLTVCKL-QQFATRATLLSMECLKTARLYSEVA 527

Query:    60 TVYFRICGEEP-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRT 118
                 R+  EE  L SA++LEQA+YC+L+++PPM  KY FH+VL+G+RY +  Q  HA R 
Sbjct:   528 KQLIRMTNEESDLRSALLLEQAAYCFLVTQPPMHRKYAFHIVLAGNRYSRAGQRKHAYRC 587

Query:   119 YRSAVSVYKGSTWSHIKDHVHFHIG-QWYAVLGMHDIA--VAHML 160
             YR A  V++   WS  +DH+ + +  Q Y +  + + +   AH+L
Sbjct:   588 YRQAYQVFQKREWSLAEDHIQYTVAKQAYMLKQLEEASRSFAHLL 632
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005575 "cellular_component" evidence=ND
UNIPROTKB|Q9Y2L5 TRAPPC8 "Trafficking protein particle complex subunit 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query889
pfam12739390 pfam12739, TRAPPC-Trs85, ER-Golgi trafficking TRAP 1e-39
pfam086261183 pfam08626, TRAPPC9-Trs120, Transport protein Trs12 1e-04
>gnl|CDD|221746 pfam12739, TRAPPC-Trs85, ER-Golgi trafficking TRAPP I complex 85 kDa subunit Back     alignment and domain information 
 Score =  150 bits (382), Expect = 1e-39
 Identities = 57/158 (36%), Positives = 79/158 (50%), Gaps = 18/158 (11%)

Query: 1   MMGLTYFMLDQSR------KEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQ 54
           M  L+  M  QS       +E +  +ENA  TY K        ATRC L   E+LK+R  
Sbjct: 233 MAALSLLMGGQSISAKIRKEEIDPYLENAMYTYLKRCLRSPYYATRCALLSAELLKSRGG 292

Query: 55  YKDAATVYFRICGEE-----PLHSAVMLEQASYCYLL-------SKPPMLHKYGFHLVLS 102
           Y++AA    R   E       + SA++LE+A+YCY         S    L K  FH+VL+
Sbjct: 293 YREAADALARWSSEILQDLGAVGSALLLERAAYCYASLQSDPPMSGGTRLRKAAFHMVLA 352

Query: 103 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHF 140
           G R+ K  Q   A+R Y+ A+ VY+G  WS  +DH+ F
Sbjct: 353 GHRWSKAGQKALALRCYKEALPVYEGKGWSLAEDHLLF 390

This family is one of the subunits of the TRAPP Golgi trafficking complex. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II, and this Trs85 is in the smaller complex. TRAPP I, but Not TRAPP II, functions in ER-Golgi transport. Trs85p was reported to function in the cytosol-to-vacuole targeting pathway, suggesting a role for this subunit in autophagy as well as in secretion. The overall architecture of TRAPP I shows the other components to be Bet3p (TRAPPC3), Bet5p (TRAPPC1), Trs20p (TRAPPC2), Trs23p (TRAPPC4), Trs31p (TRAPPC5), Trs33p (TRAPPC6a and b) and Trs85p. Length = 390
>gnl|CDD|219942 pfam08626, TRAPPC9-Trs120, Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 889
KOG1938960 consensus Protein with predicted involvement in me 100.0
PF086261185 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC 99.96
PF12739414 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 99.96
KOG19531235 consensus Targeting complex (TRAPP) subunit [Intra 99.81
PF07919554 Gryzun: Gryzun, putative trafficking through Golgi 99.2
PF06159249 DUF974: Protein of unknown function (DUF974); Inte 97.9
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 97.44
COG1470513 Predicted membrane protein [Function unknown] 97.06
KOG1586288 consensus Protein required for fusion of vesicles 95.77
KOG1586288 consensus Protein required for fusion of vesicles 95.49
PF00927107 Transglut_C: Transglutaminase family, C-terminal i 95.46
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 95.36
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 94.6
PF14874102 PapD-like: Flagellar-associated PapD-like 94.38
PF07705101 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic 93.45
PF11817247 Foie-gras_1: Foie gras liver health family 1; Inte 91.55
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 91.28
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 89.46
PF00635109 Motile_Sperm: MSP (Major sperm protein) domain; In 88.82
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 88.74
KOG2625348 consensus Uncharacterized conserved protein [Funct 88.55
PRK15179694 Vi polysaccharide biosynthesis protein TviE; Provi 88.48
PRK114471157 cellulose synthase subunit BcsC; Provisional 88.47
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 88.27
PRK15174656 Vi polysaccharide export protein VexE; Provisional 88.03
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 86.9
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 86.79
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 86.37
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 86.35
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 86.25
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 85.91
PRK12370553 invasion protein regulator; Provisional 85.88
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 85.69
PRK11788389 tetratricopeptide repeat protein; Provisional 85.6
PRK10370198 formate-dependent nitrite reductase complex subuni 85.58
PF05753181 TRAP_beta: Translocon-associated protein beta (TRA 85.52
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 84.7
PRK15359144 type III secretion system chaperone protein SscB; 84.6
TIGR02552135 LcrH_SycD type III secretion low calcium response 84.58
cd00189100 TPR Tetratricopeptide repeat domain; typically con 84.08
CHL00033168 ycf3 photosystem I assembly protein Ycf3 83.94
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 82.05
PRK09782987 bacteriophage N4 receptor, outer membrane subunit; 81.52
PRK11788389 tetratricopeptide repeat protein; Provisional 81.27
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 81.0
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 80.94
PRK114471157 cellulose synthase subunit BcsC; Provisional 80.56
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=7.1e-73  Score=661.60  Aligned_cols=695  Identities=25%  Similarity=0.300  Sum_probs=509.0

Q ss_pred             CceechhcccCCHhHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-hhhHHHHHH
Q 002714            1 MMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQ   79 (889)
Q Consensus         1 M~al~~lm~~~~~~~~~~~le~A~~~Y~~~~~~~~~~AlR~~ll~~e~l~~~~~~~~Aa~~l~r~~~~~~-l~sAlllEq   79 (889)
                      |+++++||+++..+-.-+|||+|+-+|.+.|+. .+.|.||+++++|+++.+|.|.+||+.++|++++++ +++||++||
T Consensus       221 m~sls~Fvq~~a~q~~sqyme~a~~~~~~i~k~-~~~A~rc~l~~aei~k~~~lh~eaa~~~~r~~see~dl~~allleq  299 (960)
T KOG1938|consen  221 MRSLSAFVQPDATQFPSQYMENAFPLYRLILKN-YQDANRCVLNSAEILKFLGLHKEAAEALARETSEEGDLLSALLLEQ  299 (960)
T ss_pred             hhhhhhhcCCcchhhHHHHHhhhhHHHHHHHhh-ccchhhhccCchHHHHHHHHHHHHHHHHHHhhCcCchhhhHHHHHH
Confidence            889999999996653345999999999999987 689999999999999999999999999999999886 999999999


Q ss_pred             HHhhhhccCCCcchhhHHHHHHhhHhHHhCCCcHHHHHHHHHHHhhhcCCCccccchhhhhhHHHHHHHhCCHHHH---H
Q 002714           80 ASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIA---V  156 (889)
Q Consensus        80 aA~c~l~~~~~~~RK~Af~~vLAg~ry~k~g~~~~A~rcy~~A~~vY~~~~W~~~~dhi~~~lgr~~~~l~~~~~A---v  156 (889)
                      ||+||...+|+|.|||+||+||||+||.++|++.||+|||++|+++|+.++|..++||++|++++ .+.+-+.|+|   .
T Consensus       300 aal~f~~tkp~m~~ktffHpVLal~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~-~y~l~~~D~a~~~f  378 (960)
T KOG1938|consen  300 AALCFGSTKPPMPRKTFFHPVLALIRFSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILH-VYLLCQEDDADEEF  378 (960)
T ss_pred             HHHHhhcCCCCccchhhcceeehhhhcccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHH-hhhhhcchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999 5544444444   4


Q ss_pred             HHHHH----------------------hcCCCCccCCCc-cceEeccccEEEecC--Ccccccccccch----hhhhhHH
Q 002714          157 AHMLE----------------------KTGKTFEVVKPR-LPIINISSLKVIFED--HRTYASAEAANV----RESLWRS  207 (889)
Q Consensus       157 ~h~l~----------------------~~~~~~~~~~Lp-LP~I~~~~~rV~~~~--~~~~~~~~~~~~----~e~~W~~  207 (889)
                      +|++.                      ......++++|+ +|.++++.++|++++  ++++++...+..    .+.+|..
T Consensus       379 ~~~i~~~~kqS~~~q~~FLRl~~~~~s~~~~~t~v~~l~~lp~l~~e~~~vi~~~~~~~t~~e~~~at~~~~~sd~~w~~  458 (960)
T KOG1938|consen  379 SKLIADCMKQSKGLQTEFLRLYSNKDSFIYDHTPVVQLPQLPMLSMEERLVILSEPTRSTDAEALPATHQYLVSDNIWPS  458 (960)
T ss_pred             HHHHhhhhhcChHHHHHHHHHHHHHhhcccccCCccccCCcchhhhhHHHHHhcCCCCCcchhhhhhhhhhccccccchh
Confidence            44433                      112344778899 999999999999999  455555433333    5669999


Q ss_pred             HHhhhccccccccchhhhhhhhhhh-ccccCCceeecCCeEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCC
Q 002714          208 LEEDMIPSLSTARSNWLELQSKLIM-KKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSS  286 (889)
Q Consensus       208 LEe~lv~~~~~~~~~w~~~~~~~~~-~~~~~~~~~vvgE~i~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~  286 (889)
                      ||++.+...+.|..+|+..+.+... .+..+.+++|+||++++.|+++|||++++.++++.|+|++... +....++..+
T Consensus       459 lEr~~s~~~~~~~~p~~~~ql~~~~~~~~~~~~v~v~Ge~~~l~v~~rnpl~~~~alT~~~ll~kl~~~-~~s~~~Na~s  537 (960)
T KOG1938|consen  459 LERKSSHILFAGSQPFRPSQLLLAEFSDKFKNPVPVAGEPIKLSVTLRNPLKISIALTNSSLLWKLHLD-NLSGSSNAYS  537 (960)
T ss_pred             HHHHHHHHHhcccCCCcchhcccchhccccccccccCCcceeeEEeecCccceeccccchhhhhhcccc-cccccccccc
Confidence            9999988888887777755544322 2223489999999999999999999999999999999999973 2222222222


Q ss_pred             cccccccccccccccccccCCCCCceeeeeeeEEEcCCceEEEEEEEEeCceeEEEEEEEEEEe------ccceeeEEEe
Q 002714          287 TTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRL------SGSLVGVYNF  360 (889)
Q Consensus       287 ~~~~~~~~~~~~P~~~~~~~~~~~~f~~~~~~i~L~p~Etk~v~L~v~P~~~G~L~I~Gv~~~L------~~~v~g~~~F  360 (889)
                      ...       ..|+-+   .      .-....+.+.+.|.+++.|+.+|+..|.|+|.|.+|+.      .+.+.|...|
T Consensus       538 ~~~-------~~Pe~~---~------~s~~~~~~~~~~e~~t~~L~dfp~~~g~lkii~~v~~~~~~~vd~as~yg~~~l  601 (960)
T KOG1938|consen  538 HSQ-------SSPELI---D------DSAFPELLKSGEEDFTFMLRDFPRAIGILKIIRNVVNPLIEDVDAASVYGACSL  601 (960)
T ss_pred             ccc-------cChhhh---h------hhhHHHHHhcchhceeeeeeeccccceEEeeeeccccchhcccchhhhhcccch
Confidence            110       112100   0      00123688999999999999999999999999999999      5678899999


Q ss_pred             ecchhhhhcccccc-cccCCCCCceEEEEecCCceEEEEEecCCccccCccEEEEEEEEEecCccccceEEEEecCCceE
Q 002714          361 ESNLVKKKIAKGRR-KVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFL  439 (889)
Q Consensus       361 ~i~g~rl~~tK~kr-~~~~~pd~rL~~~V~~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~  439 (889)
                      +++|+|++++|+++ ..++++|.||.+.+.+.+|.|+++|+++|..+||||+|++.|+++|.|.+|+.+|++++++|+| 
T Consensus       602 e~qgirl~~~~~~~~s~~~t~d~RL~~~~~e~lp~levs~~s~P~~lyagq~r~~~le~~nls~~P~~~v~~a~s~~~~-  680 (960)
T KOG1938|consen  602 EIQGIRLNNTKLDVTSSKLTNDTRLNILASEMLPLLEVSFTSFPQWLYAGQAREVLLELRNLSPCPAISVDLAASWPYF-  680 (960)
T ss_pred             hhhhcchhhhcccccccccChHHHHHHHHHhhhhhhheeeecCcchHHHHHHHHHHHHhhhcCCCchhhHHHHhcChhh-
Confidence            99999999999766 7899999999999999999999999999999999999999999999999999999999999977 


Q ss_pred             EeccCCCCCCcchhhhhccccccccccCCCCCCCCceeeecCCCcccCCCCeEEEEEEEEecCCceeEEEEEEEEecCCC
Q 002714          440 SIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDV  519 (889)
Q Consensus       440 ~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~~p~~~~L~pGes~~~Plwlra~~~G~~~l~~LfyYe~~~~  519 (889)
                      .  ..++   ..+.+.... ..++..   ...-+....+..++++.|.+|+++++|+|+|++.++.     =++      
T Consensus       681 ~--~l~n---~s~~~~~~~-~a~i~~---~~t~r~~~~s~~~~d~~l~g~r~rr~alW~r~~a~~~-----~~w------  740 (960)
T KOG1938|consen  681 A--VLEN---ESHRKGKMN-AANISQ---QETTRFESGSGSDEDIVLDGGRRRRAALWFRLSAEAS-----KPW------  740 (960)
T ss_pred             h--hccc---ccccccccC-Hhhhhh---hhhhhhccccCCCcccccCCCceeeeeeeEecccccc-----cch------
Confidence            1  1111   112222211 011110   0111112233355789999999999999999996550     111      


Q ss_pred             CCCceEEEEEEEEEEEEeceeeEEEEEEeeccCCceEEEEEEEEeCCCCCceEEEEEEeeecceEEEecCCCcccCCccc
Q 002714          520 SSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSES  599 (889)
Q Consensus       520 ~~~~~~R~lR~~~~i~V~pSL~vs~~~~~s~s~~~~~ll~veV~N~~~~~~~~l~Qvs~vS~~W~l~~l~~~~~i~~~~~  599 (889)
                           +|                   +++++.       .+...|.....-..+++++.+.-.|.....+.-.+..++..
T Consensus       741 -----~r-------------------~~~~r~-------~~~~~n~a~~~y~~i~~~~~s~~~l~~~~~~~e~~dvpsa~  789 (960)
T KOG1938|consen  741 -----LR-------------------QRQWRR-------ASWCLNTAKSTYSKIHWLSLSECILSKSLNLSENTDVPSAF  789 (960)
T ss_pred             -----HH-------------------hhhhhh-------hhhhhhccccceeeeeeeehhhhhhhhhccchhhccCcccc
Confidence                 12                   111111       33333444445577888888888888877776666667777


Q ss_pred             cCccceEEEEEEEeecCCCCCCCCCCCCCCccccCceeecCCCccccccCCCcchhhhhhhhhh----cccccCCCCccc
Q 002714          600 LFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLL----QRVSQDDTNTVD  675 (889)
Q Consensus       600 l~p~q~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~s~~P~~~f~~~~~~~----~~~~~~~~~~~~  675 (889)
                      ...++.++.+++.+.+...++.+++.      .+.-         ++..+..++.+||..-.-.    +.-....++  +
T Consensus       790 ~~~~~~ls~~~~~~~~~~~~~e~e~~------i~~~---------~~~~s~~~~~~~~~~~st~~~~~~~~~~~~~~--~  852 (960)
T KOG1938|consen  790 TPSGKNLSRTSVSFIGRAVEIESEQP------IVAR---------LVPLSQGETIKFFWLTSTTEVTPPAEIQSTMD--T  852 (960)
T ss_pred             CccccccceeeeccccccccccccCC------cccc---------eeeccCCcchhhhhhccccccCCChhhccChh--h
Confidence            88899999998888877665433331      1121         2333444444444331100    000122222  2


Q ss_pred             EEEEecccccCCCCCCCCCccccceeeecccccCCCcEEEEEecCceeeccCCCCceeEeEEEEEEeCCCccEEEEEEec
Q 002714          676 FIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTF  755 (889)
Q Consensus       676 ii~~w~a~~~~~~~~~~~~~~~g~~h~~~~~~~~~~~i~~~l~~p~~i~h~F~~~~c~vpv~l~l~N~s~~~v~v~i~~~  755 (889)
                      |++.|+|++++|+-  .+ ..+|                    ++-++.|.|....|.+..++.+.|.+...-+    +.
T Consensus       853 i~~~w~a~vv~~eg--~~-~~~g--------------------~~~~l~~~f~~~~~~~~~~~s~~~~~~~i~~----t~  905 (960)
T KOG1938|consen  853 IVILWKANVVNDEG--VT-RFIG--------------------PFVKLKKLFKTDSCLSSLRISCETTSKEISH----TA  905 (960)
T ss_pred             HHHhcccccccccc--ee-eecC--------------------CcceehhhccCCcccccchhhhhhhhhhcch----hh
Confidence            89999999998862  11 2223                    5566777777777777777777777663221    22


Q ss_pred             CCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCccccccCCccCccCceEEeccccceEEeCCCceeEEE
Q 002714          756 DSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIA  835 (889)
Q Consensus       756 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~f~W~g~~~~~~~l~p~~~~~~~  835 (889)
                      +.-..        -+.+-...+++-||.+|+....                    ..  .|.|+++||+|++++|.++++
T Consensus       906 ~~~~~--------~p~t~~~~n~~~~~~~v~~~~~--------------------~~--~w~~~~~~k~q~~~~~~~~~~  955 (960)
T KOG1938|consen  906 DHLCE--------LPITLLISNNDLAWRPVSVSIE--------------------ES--SWIGRPVYKQQIGILEEASLE  955 (960)
T ss_pred             hhhhc--------ccchhhhcCCcccccccchhhh--------------------hh--cccCCcceeeeecccccceee
Confidence            21111        1122334466677776654433                    11  199999999999999999999


Q ss_pred             eEEEE
Q 002714          836 MKVCL  840 (889)
Q Consensus       836 L~~~~  840 (889)
                      |+|||
T Consensus       956 m~~~~  960 (960)
T KOG1938|consen  956 MKWKI  960 (960)
T ss_pred             eEecC
Confidence            99986

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway Back     alignment and domain information
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] Back     alignment and domain information
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>COG1470 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins Back     alignment and domain information
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>KOG2625 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query889
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.4 bits (122), Expect = 1e-06
 Identities = 78/559 (13%), Positives = 177/559 (31%), Gaps = 132/559 (23%)

Query: 168 EVVKPRLPIIN-ISSLKVIFEDHRTYASAEAANV-RESLWRSLEEDMIPSLSTARSN-WL 224
           E  +P +     I     ++ D++ +A     NV R   +  L +    +L   R    +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKY---NVSRLQPYLKLRQ----ALLELRPAKNV 153

Query: 225 ELQSKLIMKKFEESNICVAGEPVK-VDIEFKNPLQIP-ISISN-------ISLICELSTR 275
            +     +    ++   VA +      ++ K   +I  +++ N       + ++ +L  +
Sbjct: 154 LIDG---VLGSGKT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 276 SDEM---ESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEV-DISLGGAETILVQL 331
            D      SD +S+     +  +++L         +     L  V +     A  +  ++
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 332 MVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDL--KFIVI 389
           ++T + + +   +        SL    +    L   +               L  K++  
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLD---HHSMTLTPDE------------VKSLLLKYLDC 313

Query: 390 K--SLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDM 447
           +   LP+     +P      A  +R    +     D        K++     S+   +  
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIR----DGLATWDNWKHVNCDKLTTIIESSLNVLE-- 367

Query: 448 TKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKIS 507
               PA  +KM           F+++  +V  FP    I   T LL  +W+         
Sbjct: 368 ----PAEYRKM-----------FDRL--SV--FPPSAHI--PTILLSLIWFD-------- 398

Query: 508 LSITIYYEMGD-VSSVIKYRLLRMHYNLEV--LPSLNVSFQISPWSSRLQQYLVRMDVVN 564
               I  ++   V+ + KY L+          +PS+ +  ++        +Y +   +V+
Sbjct: 399 ---VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV----KLENEYALHRSIVD 451

Query: 565 Q-TSSENFQIHQLSS----------VG-HQWEISLLQPFDSIFPSESLFAGQALSCFFM- 611
                + F    L            +G H   I   +    +F    +F    L   F+ 
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT-LFR--MVF----LDFRFLE 504

Query: 612 --LKNRGESSTSSDDTSSPSRLLGSDVSLQGT----ADTLFDISGSPLADF--------- 656
             +++     T+ + + S    L   +          D  ++   + + DF         
Sbjct: 505 QKIRHDS---TAWNASGSILNTL-QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560

Query: 657 -HAHERLLQRVSQDDTNTV 674
              +  LL+     +   +
Sbjct: 561 CSKYTDLLRIALMAEDEAI 579
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query889
d1ex0a3100 Transglutaminase, two C-terminal domains {Human (H 97.06
d1g0da3101 Transglutaminase, two C-terminal domains {Red sea 97.04
d1vjja399 Transglutaminase, two C-terminal domains {Human (H 96.19
d2q3za398 Transglutaminase, two C-terminal domains {Human (H 96.16
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 94.79
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 94.65
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 92.87
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 85.75
>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), blood isozyme [TaxId: 9606]

Probab=97.06  E-value=0.005  Score=33.94  Aligned_cols=87  Identities=16%  Similarity=0.190  Sum_probs=55.5

Q ss_pred             CEEECCCEEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             32651874999999858655637755679999970279753357998742223431111223335668899830356665
Q 002714          239 NICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD  318 (889)
Q Consensus       239 ~~~vvgEpi~V~V~L~NPL~ipI~ls~I~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~  318 (889)
                      ..+++|+++.+.|.|+|||.++|.  |..+..++..                     ...+-              ...-
T Consensus        11 g~~~v~~~~~v~v~F~NPL~~~L~--nc~~~vEG~G---------------------L~~~~--------------~~~~   53 (100)
T d1ex0a3          11 GTQVVGSDMTVTVQFTNPLKETLR--NVWVHLDGPG---------------------VTRPM--------------KKMF   53 (100)
T ss_dssp             ECCBTTSCEEEEEEEECCSSSCEE--EEEEEEEETT---------------------TEEEE--------------EEEE
T ss_pred             CCCCCCCEEEEEEEEECCCCCCHH--CEEEEEECCC---------------------CCEEE--------------EEEC
T ss_conf             974439708999999899987211--7999999289---------------------75006--------------9965


Q ss_pred             EEECCCCEEEEEEEEEECCEEEEEEEEE-EEEECCCEEEEEEEEC
Q ss_conf             8986873599999998673068999989-9996354015897101
Q 002714          319 ISLGGAETILVQLMVTPKVEGILKIVGV-RWRLSGSLVGVYNFES  362 (889)
Q Consensus       319 i~L~p~Etk~v~L~i~P~~~G~L~I~Gv-~~~L~~~v~g~~~F~i  362 (889)
                      =.++|+|+-++.+.++|.++|.-+|..- ..+-...+.|+..+.+
T Consensus        54 ~~v~p~~~~~~~~~~~P~~~G~~~l~a~f~s~~l~~V~G~~~v~V   98 (100)
T d1ex0a3          54 REIRPNSTVQWEEVCRPWVSGHRKLIASMSSDSLRHVYGELDVQI   98 (100)
T ss_dssp             EEECTTCEEEEEEEECCSSCEEEEEEEEEECSSCCCEEEEEEEEE
T ss_pred             CCCCCCCEEEEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEEEE
T ss_conf             860989999999999618831379999987862078477999999
>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]} Back     information, alignment and structure
>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]} Back     information, alignment and structure
>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure