Citrus Sinensis ID: 002757
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 884 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C585 | 871 | Ubiquitin carboxyl-termin | yes | no | 0.970 | 0.985 | 0.636 | 0.0 | |
| O22207 | 924 | Ubiquitin carboxyl-termin | no | no | 0.953 | 0.912 | 0.446 | 0.0 | |
| Q9ZSB5 | 923 | Ubiquitin carboxyl-termin | no | no | 0.946 | 0.906 | 0.434 | 0.0 | |
| Q93Y01 | 910 | Ubiquitin carboxyl-termin | no | no | 0.932 | 0.905 | 0.438 | 0.0 | |
| Q9MAQ3 | 892 | Putative ubiquitin carbox | no | no | 0.847 | 0.839 | 0.443 | 1e-175 | |
| B2GUZ1 | 961 | Ubiquitin carboxyl-termin | yes | no | 0.857 | 0.788 | 0.368 | 1e-126 | |
| A6QR55 | 963 | Ubiquitin carboxyl-termin | yes | no | 0.925 | 0.849 | 0.353 | 1e-125 | |
| Q13107 | 963 | Ubiquitin carboxyl-termin | yes | no | 0.668 | 0.613 | 0.415 | 1e-122 | |
| Q5RCD3 | 963 | Ubiquitin carboxyl-termin | yes | no | 0.668 | 0.613 | 0.415 | 1e-121 | |
| Q2HJE4 | 952 | Ubiquitin carboxyl-termin | no | no | 0.671 | 0.623 | 0.356 | 1e-86 |
| >sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana GN=UBP8 PE=1 SV=2 | Back alignment and function desciption |
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Score = 1142 bits (2953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/883 (63%), Positives = 694/883 (78%), Gaps = 25/883 (2%)
Query: 6 EDHSDSTHRVDSDNSSSNNNNNDNDQRVYLVPYRWWRDAQESTSSDSDKKRGVLYTATQG 65
E +T R+DS N +QRVY VP RWW+DAQ+S S+S +KR +LYTA+ G
Sbjct: 8 ESPDSTTQRIDSFN---------GEQRVYFVPLRWWKDAQDSMPSESVEKREILYTASCG 58
Query: 66 TSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWLQALKWH 125
+SYGGPMK+INNIFNSD++F+LRRE + +LQNGE GE VSGRD+ALV +MWLQALKW+
Sbjct: 59 SSYGGPMKLINNIFNSDILFDLRREGD-ALQNGETGEASVSGRDFALVSSDMWLQALKWY 117
Query: 126 SDTKVAAKNRKSFLASEDDMADVYPLQLRLSVMRETNSLGVKISKKDNAVELFKRACKIF 185
D K K KSF A D DVYP+QLRLSV++ETNSL VKI KKDN+VE F+RACKIF
Sbjct: 118 HDDKNTEKGVKSFSAGGVDRGDVYPVQLRLSVLQETNSLAVKICKKDNSVECFRRACKIF 177
Query: 186 SIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQIYGLSDSLKCREGRKD 245
S++SE L IWD SGQTTL+F +D + SKDC + +D EILLELQIYGLSDS+K +E +K+
Sbjct: 178 SLDSEQLRIWDISGQTTLFFESDVSN-SKDCQQQADQEILLELQIYGLSDSIKLKESKKE 236
Query: 246 EMAVQHSNGSLTNGS-----FGIVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQ 300
+ + Q +NG +TNG F R++S++F G++GEAG LGLTGLQNLGNTCFMNS+LQ
Sbjct: 237 DGSTQQTNG-ITNGMNGGTVFRFGRSNSLSFLGKAGEAGTLGLTGLQNLGNTCFMNSSLQ 295
Query: 301 CLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKL 360
CL HTPKLVD+FLG+Y +EIN DNPLGM GEIALAFGDLLR LWAPGA+ V+PRTFK+KL
Sbjct: 296 CLAHTPKLVDFFLGEYSKEINLDNPLGMKGEIALAFGDLLRSLWAPGASTVAPRTFKAKL 355
Query: 361 ARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNH 420
ARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVK KPY EAKDGDGR D ++ADEYW+NH
Sbjct: 356 ARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKNKPYVEAKDGDGRPDAEVADEYWRNH 415
Query: 421 LARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGT 480
+ARNDSIIVD+CQGQYKSTLVCP+CKKVSV FDPFMYLSLPLP T++R M LTV++ DG+
Sbjct: 416 VARNDSIIVDVCQGQYKSTLVCPICKKVSVMFDPFMYLSLPLPCTSMRTMDLTVMSADGS 475
Query: 481 AKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIR 540
+ P P T+ VPK+GKFEDL +AL AC+L ETLLV E+YN++IIR+LEEP DS++LIR
Sbjct: 476 SLPIPLTVNVPKFGKFEDLHKALVTACSLPEEETLLVTEVYNNRIIRFLEEPTDSLTLIR 535
Query: 541 DDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDI 600
D D+LV YRL+K+ + PL+V+MHQ+LEEQ+I GK + A GIPLV+++ + +G D+
Sbjct: 536 DGDKLVVYRLKKDANNSPLIVYMHQKLEEQFISGKSSPTWKAFGIPLVSRLCDVENGSDV 595
Query: 601 RNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKE-VEPPS 659
NLYL+LL F +P + F N+ T E + + + + VKE E
Sbjct: 596 ENLYLKLLSSFKMPT-EFFTENL-ENPTEEEATDKTDTDGTTSVEDTNSTDVKETTESLP 653
Query: 660 DAELQFYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEI 719
D L+ YLTD++G ++++ +P+ + + ++VL W K ++ YDT LLSS PE+
Sbjct: 654 DPVLRLYLTDDRGNSIEAEMLKEKPVNKS---KRLNVLARWPVKELDVYDTCLLSSLPEV 710
Query: 720 FKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILV 779
KSG KRPQESVSL+KCLEAFLTEEPLGP+DMWYCPGCK+H QA KKLDLWRLPEILV
Sbjct: 711 SKSG--TKRPQESVSLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILV 768
Query: 780 IHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGH 839
IHLKRFSYSRF KNKLE YVDFP+DNLDLS+++++ N + + RYMLYA+SNHYGSMGGGH
Sbjct: 769 IHLKRFSYSRFMKNKLEAYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYGSMGGGH 828
Query: 840 YTAFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVVE 882
YTA+VHHGG +WYDFDDSHV+ ISQ+KIKTSAAYVLFY+R+V+
Sbjct: 829 YTAYVHHGGDRWYDFDDSHVHQISQEKIKTSAAYVLFYKRLVD 871
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Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2 |
| >sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9ZSB5|UBP10_ARATH Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana GN=UBP10 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q93Y01|UBP9_ARATH Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana GN=UBP9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9MAQ3|UBP11_ARATH Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana GN=UBP11 PE=3 SV=2 | Back alignment and function description |
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| >sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus GN=Usp4 PE=1 SV=1 | Back alignment and function description |
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| >sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q2HJE4|UBP15_BOVIN Ubiquitin carboxyl-terminal hydrolase 15 OS=Bos taurus GN=USP15 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 884 | ||||||
| 255549649 | 889 | Ubiquitin carboxyl-terminal hydrolase, p | 0.984 | 0.978 | 0.739 | 0.0 | |
| 359479088 | 882 | PREDICTED: ubiquitin carboxyl-terminal h | 0.981 | 0.984 | 0.720 | 0.0 | |
| 356543638 | 874 | PREDICTED: ubiquitin carboxyl-terminal h | 0.977 | 0.988 | 0.687 | 0.0 | |
| 449444827 | 877 | PREDICTED: ubiquitin carboxyl-terminal h | 0.957 | 0.964 | 0.690 | 0.0 | |
| 356550050 | 872 | PREDICTED: ubiquitin carboxyl-terminal h | 0.977 | 0.990 | 0.684 | 0.0 | |
| 357453291 | 871 | Ubiquitin carboxyl-terminal hydrolase [M | 0.972 | 0.987 | 0.680 | 0.0 | |
| 257050978 | 871 | RecName: Full=Ubiquitin carboxyl-termina | 0.970 | 0.985 | 0.636 | 0.0 | |
| 13374862 | 901 | ubiquitin-specific protease-like protein | 0.970 | 0.952 | 0.616 | 0.0 | |
| 297812317 | 891 | ubiquitin carboxyl-terminal hydrolase 8 | 0.961 | 0.953 | 0.620 | 0.0 | |
| 240256325 | 913 | ubiquitin-specific protease 8 [Arabidops | 0.970 | 0.939 | 0.605 | 0.0 |
| >gi|255549649|ref|XP_002515876.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] gi|223545031|gb|EEF46545.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1364 bits (3530), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 661/894 (73%), Positives = 758/894 (84%), Gaps = 24/894 (2%)
Query: 4 LAEDHSDSTHRV-DSDNSSSNNNNNDNDQRVYLVPYRWWRDAQEST-SSDSDKKRGVLYT 61
++ED SD THR DSDN NDQR+Y VPYRWW+DAQ+ST SS+SD KRGVLY
Sbjct: 6 VSEDLSDLTHRQPDSDN---------NDQRLYFVPYRWWKDAQDSTISSESDGKRGVLYM 56
Query: 62 ATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWLQA 121
T G+SY GPMK+INNIFNSDLV NLRREEE SLQNGENGEVGVSGRDYALV GEMWL+A
Sbjct: 57 GTSGSSYAGPMKLINNIFNSDLVLNLRREEE-SLQNGENGEVGVSGRDYALVSGEMWLKA 115
Query: 122 LKWHSDTKVAAKNRKSFLASEDDMADVYPLQLRLSVMRETNSLGVKISKKDNAVELFKRA 181
LKWHSD KVA+K+ K+F A+EDDM+DVYPLQLRLSV+RE NSLGVKISKK+NA ELF+RA
Sbjct: 116 LKWHSDAKVASKSSKTFSAAEDDMSDVYPLQLRLSVLREVNSLGVKISKKENATELFRRA 175
Query: 182 CKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQIYGLSDSLKCRE 241
CKIFS++SE+L IWDFSGQTTL+F+NDK+K K+ R D EI+LELQ+YGLSD++KCR+
Sbjct: 176 CKIFSVDSEMLRIWDFSGQTTLFFVNDKSKSPKESQRQLDQEIVLELQVYGLSDNMKCRD 235
Query: 242 GRKDEMAVQHSNGSLTNGSF---GIVRNSSITFS--------GRSGEAGCLGLTGLQNLG 290
G+KD+ Q+ NG+ ++G+ G V N+S +F G+SGEAG LGLTGLQNLG
Sbjct: 236 GKKDDAVAQNCNGTHSSGTSLMNGSVSNTSTSFFRCDSSALFGKSGEAGSLGLTGLQNLG 295
Query: 291 NTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAP 350
NTCFMNSA+QCL HTPKLVDYFLGDY REINHDNPLGMDGEIALAFGDLLRKLWAPGA P
Sbjct: 296 NTCFMNSAIQCLAHTPKLVDYFLGDYGREINHDNPLGMDGEIALAFGDLLRKLWAPGATP 355
Query: 351 VSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDE 410
V+PRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVK KPY EAKDG+GR DE
Sbjct: 356 VAPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKSKPYVEAKDGEGRLDE 415
Query: 411 DIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMM 470
++ADEYWQNH+ARNDSIIVD+CQGQYKSTLVCP+CKKVSVTFDPFMYLSLPLPST +R M
Sbjct: 416 EVADEYWQNHVARNDSIIVDICQGQYKSTLVCPICKKVSVTFDPFMYLSLPLPSTNIRTM 475
Query: 471 TLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLE 530
TLTVV+TDG+++PS FTI+VPKYGK EDL +ALS AC+LG++E LLVAE+YN++IIRYLE
Sbjct: 476 TLTVVSTDGSSQPSSFTISVPKYGKCEDLTQALSKACSLGIDEMLLVAEVYNNRIIRYLE 535
Query: 531 EPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAK 590
EP+DS+SLIRD D+LVAYRL+KE D PLVVFMHQ +EEQY+HGK TS A GIPLV
Sbjct: 536 EPSDSLSLIRDGDRLVAYRLKKELDNIPLVVFMHQHMEEQYVHGKQTSSWKAFGIPLVGP 595
Query: 591 VSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPS 650
V L +G DI NLYL+LL PF IPA D + STA EE+T + + G A PS
Sbjct: 596 VHSLVNGSDIHNLYLKLLSPFHIPADDGMYSCNNTTSTAKEEITEKDNGCSASHGNANPS 655
Query: 651 SVKEVEPPSD-AELQFYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYD 709
V+E S +ELQFY+TDEKGIV++ KI +NEP+ +TGVP+ +VLVCW+ K IEQYD
Sbjct: 656 IVEEATNSSSYSELQFYITDEKGIVQDLKIGINEPVPVTGVPKRFNVLVCWTEKQIEQYD 715
Query: 710 TRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKL 769
TRLLSS PE+FKSGFL KRPQESVSLYKCLEAFL EEPLGP+DMW+CP CKKH QASKKL
Sbjct: 716 TRLLSSLPEVFKSGFLAKRPQESVSLYKCLEAFLKEEPLGPDDMWFCPSCKKHRQASKKL 775
Query: 770 DLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVS 829
DLWRLPEILVIHLKRFSY+RF KNKLE YVDFPVD+LDLS ++++ N +LS+RYMLYA+S
Sbjct: 776 DLWRLPEILVIHLKRFSYTRFMKNKLEAYVDFPVDDLDLSAYISYKNGQLSHRYMLYAIS 835
Query: 830 NHYGSMGGGHYTAFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVVEV 883
NHYGSMGGGHYTAFVHHG G+WYDFDDS V+PISQDKIKTSAAYVLFYRRVVEV
Sbjct: 836 NHYGSMGGGHYTAFVHHGAGRWYDFDDSLVHPISQDKIKTSAAYVLFYRRVVEV 889
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359479088|ref|XP_003632213.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356543638|ref|XP_003540267.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449444827|ref|XP_004140175.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356550050|ref|XP_003543403.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357453291|ref|XP_003596922.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355485970|gb|AES67173.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|257050978|sp|Q9C585.2|UBP8_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 8; AltName: Full=Deubiquitinating enzyme 8; Short=AtUBP8; AltName: Full=Ubiquitin thioesterase 8; AltName: Full=Ubiquitin-specific-processing protease 8 | Back alignment and taxonomy information |
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| >gi|13374862|emb|CAC34496.1| ubiquitin-specific protease-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297812317|ref|XP_002874042.1| ubiquitin carboxyl-terminal hydrolase 8 [Arabidopsis lyrata subsp. lyrata] gi|297319879|gb|EFH50301.1| ubiquitin carboxyl-terminal hydrolase 8 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|240256325|ref|NP_568411.4| ubiquitin-specific protease 8 [Arabidopsis thaliana] gi|240256327|ref|NP_851052.4| ubiquitin-specific protease 8 [Arabidopsis thaliana] gi|332005587|gb|AED92970.1| ubiquitin-specific protease 8 [Arabidopsis thaliana] gi|332005588|gb|AED92971.1| ubiquitin-specific protease 8 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 884 | ||||||
| TAIR|locus:505006627 | 871 | UBP8 "ubiquitin-specific prote | 0.951 | 0.965 | 0.636 | 1.6e-294 | |
| TAIR|locus:2058490 | 924 | UBP5 "ubiquitin-specific prote | 0.702 | 0.672 | 0.495 | 4.4e-180 | |
| TAIR|locus:2139202 | 923 | UBP9 "AT4G10570" [Arabidopsis | 0.696 | 0.667 | 0.514 | 2.7e-178 | |
| TAIR|locus:2139222 | 910 | UBP10 "AT4G10590" [Arabidopsis | 0.648 | 0.629 | 0.538 | 1.7e-176 | |
| TAIR|locus:2037985 | 892 | UBP11 "AT1G32850" [Arabidopsis | 0.409 | 0.405 | 0.515 | 2.9e-164 | |
| UNIPROTKB|E9PCQ3 | 956 | USP15 "Ubiquitin carboxyl-term | 0.679 | 0.628 | 0.342 | 2.7e-126 | |
| UNIPROTKB|Q9Y4E8 | 981 | USP15 "Ubiquitin carboxyl-term | 0.411 | 0.371 | 0.422 | 4e-126 | |
| UNIPROTKB|F6Z5C0 | 982 | usp15 "Ubiquitin carboxyl-term | 0.409 | 0.368 | 0.425 | 6.5e-126 | |
| UNIPROTKB|F1SKD5 | 982 | LOC100737425 "Ubiquitin carbox | 0.411 | 0.370 | 0.422 | 1e-125 | |
| MGI|MGI:101857 | 981 | Usp15 "ubiquitin specific pept | 0.409 | 0.369 | 0.428 | 1e-125 |
| TAIR|locus:505006627 UBP8 "ubiquitin-specific protease 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2828 (1000.6 bits), Expect = 1.6e-294, P = 1.6e-294
Identities = 547/859 (63%), Positives = 674/859 (78%)
Query: 31 QRVYLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRRE 90
QRVY VP RWW+DAQ+S S+S +KR +LYTA+ G+SYGGPMK+INNIFNSD++F+LRRE
Sbjct: 24 QRVYFVPLRWWKDAQDSMPSESVEKREILYTASCGSSYGGPMKLINNIFNSDILFDLRRE 83
Query: 91 EEVSLQNGENGEVGVSGRDYALVPGEMWLQALKWHSDTKVAAKNRKSFLASEDDMADVYP 150
+ +LQNGE GE VSGRD+ALV +MWLQALKW+ D K K KSF A D DVYP
Sbjct: 84 GD-ALQNGETGEASVSGRDFALVSSDMWLQALKWYHDDKNTEKGVKSFSAGGVDRGDVYP 142
Query: 151 LQLRLSVMRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKN 210
+QLRLSV++ETNSL VKI KKDN+VE F+RACKIFS++SE L IWD SGQTTL+F +D +
Sbjct: 143 VQLRLSVLQETNSLAVKICKKDNSVECFRRACKIFSLDSEQLRIWDISGQTTLFFESDVS 202
Query: 211 KFSKDCLRLSDHEILLELQIYGLSDSLKCREGRKDEMAVQHSNGSLTNGS-----FGIVR 265
SKDC + +D EILLELQIYGLSDS+K +E +K++ + Q +NG +TNG F R
Sbjct: 203 N-SKDCQQQADQEILLELQIYGLSDSIKLKESKKEDGSTQQTNG-ITNGMNGGTVFRFGR 260
Query: 266 NSSITFSGRSGEAXXXXXXXXXXXXXXXFMNSALQCLVHTPKLVDYFLGDYFREINHDNP 325
++S++F G++GEA FMNS+LQCL HTPKLVD+FLG+Y +EIN DNP
Sbjct: 261 SNSLSFLGKAGEAGTLGLTGLQNLGNTCFMNSSLQCLAHTPKLVDFFLGEYSKEINLDNP 320
Query: 326 LGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDG 385
LGM GEIALAFGDLLR LWAPGA+ V+PRTFK+KLARFAPQFSGFNQHDSQELLAFLLDG
Sbjct: 321 LGMKGEIALAFGDLLRSLWAPGASTVAPRTFKAKLARFAPQFSGFNQHDSQELLAFLLDG 380
Query: 386 LHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVC 445
LHEDLNRVK KPY EAKDGDGR D ++ADEYW+NH+ARNDSIIVD+CQGQYKSTLVCP+C
Sbjct: 381 LHEDLNRVKNKPYVEAKDGDGRPDAEVADEYWRNHVARNDSIIVDVCQGQYKSTLVCPIC 440
Query: 446 KKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSI 505
KKVSV FDPFMYLSLPLP T++R M LTV++ DG++ P P T+ VPK+GKFEDL +AL
Sbjct: 441 KKVSVMFDPFMYLSLPLPCTSMRTMDLTVMSADGSSLPIPLTVNVPKFGKFEDLHKALVT 500
Query: 506 ACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQ 565
AC+L ETLLV E+YN++IIR+LEEP DS++LIRD D+LV YRL+K+ + PL+V+MHQ
Sbjct: 501 ACSLPEEETLLVTEVYNNRIIRFLEEPTDSLTLIRDGDKLVVYRLKKDANNSPLIVYMHQ 560
Query: 566 QLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTA 625
+LEEQ+I GK + A GIPLV+++ + +G D+ NLYL+LL F +P + F N+
Sbjct: 561 KLEEQFISGKSSPTWKAFGIPLVSRLCDVENGSDVENLYLKLLSSFKMPT-EFFTENLE- 618
Query: 626 GSTAIEEVTRIVDNVPVTGGVATPSS-VKEV-EPPSDAELQFYLTDEKGIVKNSKIVMNE 683
+ EE T D T T S+ VKE E D L+ YLTD++G ++++ +
Sbjct: 619 -NPTEEEATDKTDTDGTTSVEDTNSTDVKETTESLPDPVLRLYLTDDRGNSIEAEMLKEK 677
Query: 684 PIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFL 743
P+ + + ++VL W K ++ YDT LLSS PE+ KSG KRPQESVSL+KCLEAFL
Sbjct: 678 PVNKS---KRLNVLARWPVKELDVYDTCLLSSLPEVSKSG--TKRPQESVSLFKCLEAFL 732
Query: 744 TEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPV 803
TEEPLGP+DMWYCPGCK+H QA KKLDLWRLPEILVIHLKRFSYSRF KNKLE YVDFP+
Sbjct: 733 TEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILVIHLKRFSYSRFMKNKLEAYVDFPL 792
Query: 804 DNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHGGGQWYDFDDSHVYPIS 863
DNLDLS+++++ N + + RYMLYA+SNHYGSMGGGHYTA+VHHGG +WYDFDDSHV+ IS
Sbjct: 793 DNLDLSSYISYKNGQTTYRYMLYAISNHYGSMGGGHYTAYVHHGGDRWYDFDDSHVHQIS 852
Query: 864 QDKIKTSAAYVLFYRRVVE 882
Q+KIKTSAAYVLFY+R+V+
Sbjct: 853 QEKIKTSAAYVLFYKRLVD 871
|
|
| TAIR|locus:2058490 UBP5 "ubiquitin-specific protease 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2139202 UBP9 "AT4G10570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2139222 UBP10 "AT4G10590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2037985 UBP11 "AT1G32850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E9PCQ3 USP15 "Ubiquitin carboxyl-terminal hydrolase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9Y4E8 USP15 "Ubiquitin carboxyl-terminal hydrolase 15" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F6Z5C0 usp15 "Ubiquitin carboxyl-terminal hydrolase 15" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SKD5 LOC100737425 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:101857 Usp15 "ubiquitin specific peptidase 15" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A6QR55 | UBP4_BOVIN | 3, ., 4, ., 1, 9, ., 1, 2 | 0.3537 | 0.9253 | 0.8494 | yes | no |
| Q9C585 | UBP8_ARATH | 3, ., 4, ., 1, 9, ., 1, 2 | 0.6364 | 0.9705 | 0.9850 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.19 | 0.976 |
| 3rd Layer | 3.4.19.12 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 884 | |||
| COG5560 | 823 | COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po | 1e-138 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 2e-58 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 9e-51 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 5e-40 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 4e-39 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 2e-38 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 3e-33 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 2e-31 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 3e-27 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 8e-27 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 2e-26 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 2e-24 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 1e-22 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 2e-19 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 9e-19 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 2e-18 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 3e-18 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 4e-15 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 2e-14 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 3e-13 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 1e-12 | |
| cd02669 | 440 | cd02669, Peptidase_C19M, A subfamily of Peptidase | 4e-12 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 1e-11 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 1e-11 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 1e-11 | |
| cd02669 | 440 | cd02669, Peptidase_C19M, A subfamily of Peptidase | 2e-11 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 4e-10 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 3e-09 | |
| pfam13423 | 296 | pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr | 1e-08 | |
| COG5207 | 749 | COG5207, UBP14, Isopeptidase T [Posttranslational | 2e-08 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 3e-08 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 4e-08 | |
| COG5077 | 1089 | COG5077, COG5077, Ubiquitin carboxyl-terminal hydr | 4e-08 | |
| cd02673 | 245 | cd02673, Peptidase_C19Q, A subfamily of Peptidase | 4e-07 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 8e-07 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 3e-06 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 8e-06 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 6e-05 | |
| COG5077 | 1089 | COG5077, COG5077, Ubiquitin carboxyl-terminal hydr | 2e-04 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 0.001 | |
| cd02672 | 268 | cd02672, Peptidase_C19P, A subfamily of Peptidase | 0.001 | |
| COG5207 | 749 | COG5207, UBP14, Isopeptidase T [Posttranslational | 0.002 | |
| cd02670 | 241 | cd02670, Peptidase_C19N, A subfamily of Peptidase | 0.002 |
| >gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 431 bits (1109), Expect = e-138
Identities = 260/791 (32%), Positives = 364/791 (46%), Gaps = 83/791 (10%)
Query: 109 DYALVPGEMWLQALKWHSDTKVAAKNRKSFLASEDD-MADVYPLQLRLSVMRETN----S 163
DY+++ G +W ++W+ + L SE + YP+ +L + N +
Sbjct: 94 DYSIISGAVWQLLVRWYGLAGLITPRITVLLPSESAPEVESYPVVFKLHWLFSINGSLIN 153
Query: 164 LGVKI-----SKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLR 218
LG S +L +R F S+ +WD + L + F + +
Sbjct: 154 LGHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFRLWDVVPEIMGLRLGLDSFFRRYRVL 213
Query: 219 LSDHEILLELQIYGLSDSLKCREGRKDEMAVQHSNGSLTNGSFGIVRNSSITFSGRSGEA 278
SD +L L L + ++ N S N SI
Sbjct: 214 ASDGRVLHPLTRLELFEDRSV-----LLLSKITRNPDWLVDSIVDDHNRSIN-------- 260
Query: 279 GCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFG 337
G GL+NLGNTC+MNSALQCL+HT +L DYFL D Y IN +NPLGM G +A A+
Sbjct: 261 KEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYA 320
Query: 338 DLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKP 397
DL+++L+ +P FK + F +FSG++Q DSQE +AFLLDGLHEDLNR+ KP
Sbjct: 321 DLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKP 380
Query: 398 YAEAKD---GDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDP 454
Y D GD + A E W HL RNDSII DL QG YKSTL CP C VS+TFDP
Sbjct: 381 YTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDP 440
Query: 455 FMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNET 514
FM L+LPLP + V T+ V G P I + L + +
Sbjct: 441 FMDLTLPLPVSMVWKHTIVVFPESGR--RQPLKIELDASSTIRGLKKLVDAEYGKLGCFE 498
Query: 515 LLVAEIYNHQIIRYLEEPADSIS-LIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIH 573
+ V IY LE + I D + Y + ND V +H ++E+ Y
Sbjct: 499 IKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLY---ETNDNGIEVPVVHLRIEKGYKS 555
Query: 574 GKLTSCPNALGIPLVAKVSYLAHGLDIRN-LYLELLKPFCIPAKDTFNNNVTAGSTAIEE 632
+L G P +L + I+ +Y +L+K F + V T ++
Sbjct: 556 KRL------FGDP------FLQLNVLIKASIYDKLVKEF-----EELLVLVEMKKTDVDL 598
Query: 633 VTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGI-VKNSKIVMNEPIAMTGVP 691
V+ +E P +L E I K + V E
Sbjct: 599 VS-----------EQVRLLREESSP------SSWLKLETEIDTKREEQVEEEGQMNF--N 639
Query: 692 EEVHVLVCWSGK-LIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGP 750
+ V + W K + + L + EI + +++L CL F E LG
Sbjct: 640 DAVVISCEWEEKRYLSLFSYDPLWTIREI-------GAAERTITLQDCLNEFSKPEQLGL 692
Query: 751 EDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLST 810
D WYCPGCK+ QASK+++LWRLP IL+IHLKRFS R ++K++ V++P+D+LDLS
Sbjct: 693 SDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSG 752
Query: 811 HVAH-LNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHGG-GQWYDFDDSHVYPISQDKIK 868
+ +L Y LYAV NHYG + GGHYTA+ + WY FDDS + + +
Sbjct: 753 VEYMVDDPRLI--YDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSV 810
Query: 869 TSAAYVLFYRR 879
TS+AYVLFYRR
Sbjct: 811 TSSAYVLFYRR 821
|
Length = 823 |
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239135 cd02670, Peptidase_C19N, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 884 | |||
| COG5560 | 823 | UBP12 Ubiquitin C-terminal hydrolase [Posttranslat | 100.0 | |
| KOG1870 | 842 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| COG5533 | 415 | UBP5 Ubiquitin C-terminal hydrolase [Posttranslati | 100.0 | |
| KOG1865 | 545 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02663 | 300 | Peptidase_C19G A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02660 | 328 | Peptidase_C19D A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02671 | 332 | Peptidase_C19O A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02668 | 324 | Peptidase_C19L A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02667 | 279 | Peptidase_C19K A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02669 | 440 | Peptidase_C19M A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1868 | 653 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| cd02664 | 327 | Peptidase_C19H A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02657 | 305 | Peptidase_C19A A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02658 | 311 | Peptidase_C19B A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02661 | 304 | Peptidase_C19E A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02659 | 334 | peptidase_C19C A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02662 | 240 | Peptidase_C19F A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1873 | 877 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| cd02674 | 230 | Peptidase_C19R A subfamily of peptidase C19. Pepti | 100.0 | |
| cd02673 | 245 | Peptidase_C19Q A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1867 | 492 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| cd02665 | 228 | Peptidase_C19I A subfamily of Peptidase C19. Pepti | 100.0 | |
| PF00443 | 269 | UCH: Ubiquitin carboxyl-terminal hydrolase; InterP | 100.0 | |
| KOG0944 | 763 | consensus Ubiquitin-specific protease UBP14 [Postt | 100.0 | |
| cd02666 | 343 | Peptidase_C19J A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1866 | 944 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02257 | 255 | Peptidase_C19 Peptidase C19 contains ubiquitinyl h | 100.0 | |
| COG5077 | 1089 | Ubiquitin carboxyl-terminal hydrolase [Posttransla | 100.0 | |
| cd02672 | 268 | Peptidase_C19P A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG4598 | 1203 | consensus Putative ubiquitin-specific protease [Po | 100.0 | |
| COG5207 | 749 | UBP14 Isopeptidase T [Posttranslational modificati | 100.0 | |
| cd02670 | 241 | Peptidase_C19N A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1863 | 1093 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| PF13423 | 295 | UCH_1: Ubiquitin carboxyl-terminal hydrolase | 99.97 | |
| KOG1871 | 420 | consensus Ubiquitin-specific protease [Posttransla | 99.96 | |
| KOG2026 | 442 | consensus Spindle pole body protein - Sad1p [Cytos | 99.96 | |
| KOG1872 | 473 | consensus Ubiquitin-specific protease [Posttransla | 99.92 | |
| PF06337 | 99 | DUSP: DUSP domain; InterPro: IPR006615 Deubiquitin | 99.82 | |
| smart00695 | 86 | DUSP Domain in ubiquitin-specific proteases. | 99.77 | |
| PF14836 | 88 | Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A | 99.49 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 99.47 | |
| PF14533 | 213 | USP7_C2: Ubiquitin-specific protease C-terminal; P | 98.06 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 96.62 | |
| PF15499 | 275 | Peptidase_C98: Ubiquitin-specific peptidase-like, | 96.3 | |
| PF14560 | 87 | Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K | 95.4 | |
| PTZ00044 | 76 | ubiquitin; Provisional | 94.83 | |
| cd01807 | 74 | GDX_N ubiquitin-like domain of GDX. GDX contains a | 94.26 | |
| cd01796 | 71 | DDI1_N DNA damage inducible protein 1 ubiquitin-li | 94.03 | |
| cd01799 | 75 | Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO | 93.6 | |
| cd01806 | 76 | Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn | 93.35 | |
| cd01803 | 76 | Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 | 93.12 | |
| cd01810 | 74 | ISG15_repeat2 ISG15 ubiquitin-like protein, second | 92.98 | |
| cd01763 | 87 | Sumo Small ubiquitin-related modifier (SUMO). Smal | 92.94 | |
| cd01812 | 71 | BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter | 92.72 | |
| cd01798 | 70 | parkin_N amino-terminal ubiquitin-like of parkin p | 92.66 | |
| cd01789 | 84 | Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol | 92.4 | |
| cd01794 | 70 | DC_UbP_C dendritic cell derived ubiquitin-like pro | 92.04 | |
| PF00789 | 82 | UBX: UBX domain; InterPro: IPR001012 The UBX domai | 91.7 | |
| cd01795 | 107 | USP48_C USP ubiquitin-specific protease. The USP ( | 91.35 | |
| PF00240 | 69 | ubiquitin: Ubiquitin family; InterPro: IPR000626 U | 91.26 | |
| cd01809 | 72 | Scythe_N Ubiquitin-like domain of Scythe protein. | 91.08 | |
| cd01800 | 76 | SF3a120_C Ubiquitin-like domain of Mammalian splic | 90.42 | |
| cd01808 | 71 | hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC | 90.27 | |
| cd01805 | 77 | RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo | 90.02 | |
| cd01804 | 78 | midnolin_N Ubiquitin-like domain of midnolin. midn | 89.53 | |
| cd01802 | 103 | AN1_N ubiquitin-like domain of AN1. AN1 (also know | 89.11 | |
| cd01791 | 73 | Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know | 89.09 | |
| cd01793 | 74 | Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui | 88.76 | |
| cd01792 | 80 | ISG15_repeat1 ISG15 ubiquitin-like protein, first | 88.61 | |
| cd01797 | 78 | NIRF_N amino-terminal ubiquitin-like domain of Np9 | 88.26 | |
| smart00166 | 80 | UBX Domain present in ubiquitin-regulatory protein | 87.71 | |
| cd01767 | 77 | UBX UBX (ubiquitin regulatory X) domain. The UBX ( | 86.23 | |
| PF11976 | 72 | Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter | 86.05 | |
| PF11543 | 80 | UN_NPL4: Nuclear pore localisation protein NPL4; I | 85.85 | |
| cd01771 | 80 | Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac | 85.3 | |
| cd01774 | 85 | Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i | 84.42 | |
| cd01813 | 74 | UBP_N UBP ubiquitin processing protease. The UBP ( | 84.38 | |
| cd01773 | 82 | Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i | 84.04 | |
| smart00213 | 64 | UBQ Ubiquitin homologues. Ubiquitin-mediated prote | 83.9 | |
| cd01769 | 69 | UBL Ubiquitin-like domain of UBL. UBLs function by | 82.96 | |
| PF05408 | 193 | Peptidase_C28: Foot-and-mouth virus L-proteinase; | 81.95 |
| >COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-125 Score=1026.33 Aligned_cols=734 Identities=33% Similarity=0.530 Sum_probs=571.2
Q ss_pred CCCeEEEEchHHHHHHHHhcCCCCccccccccccCCCCCCCCCCCCCCcccChhhccccccchhcccccCCcccCCCCCC
Q 002757 29 NDQRVYLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGR 108 (884)
Q Consensus 29 ~g~~~ylIs~~W~~~w~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~l~~~l~e~~ 108 (884)
.++..|++++.|+....++...+ ...||||+-..|+. .++..++..+.++.
T Consensus 43 ~~~~a~i~~y~wyeg~fd~~~~d--------------------g~~pgPi~q~~i~d---------~e~e~lk~sl~e~i 93 (823)
T COG5560 43 QCEYAVIFAYAWYEGMFDRASCD--------------------GGSPGPIVQGPIVD---------FEPESLKKSLREGI 93 (823)
T ss_pred cCceEEEEehHHhhhhccccccc--------------------CCCCCCCCcccccc---------cChhhcchhhhcCC
Confidence 48899999999999887766532 34599999888875 12678999999999
Q ss_pred CEEEeCHHHHHHHHHHcC-CCCcceEEeecCCCc-cCCcccccceEEEEEEecc---------CCeeEEEEcccccHHHH
Q 002757 109 DYALVPGEMWLQALKWHS-DTKVAAKNRKSFLAS-EDDMADVYPLQLRLSVMRE---------TNSLGVKISKKDNAVEL 177 (884)
Q Consensus 109 dy~~vp~~~w~~l~~wYG-~~~~i~R~Vi~~~~~-~~~v~EvyP~~l~l~~~~~---------~~~~~~~~Sk~~ti~~l 177 (884)
||.+|.+.+|+.|++||| .|+.++|.++--+.. ...+ |+||+.++++...+ .....+.+|+..|+.++
T Consensus 94 dysiis~~vw~llvrwyGl~gl~~pr~tvll~ses~p~v-e~yp~~f~lh~Lf~ing~~~n~gh~p~~~s~ss~~tlrdl 172 (823)
T COG5560 94 DYSIISGAVWQLLVRWYGLAGLITPRITVLLPSESAPEV-ESYPVVFKLHWLFSINGSLINLGHDPVPHSASSHGTLRDL 172 (823)
T ss_pred CeeeechHHHHHHHHHhcccccceeeEEeccccccCCcc-ccccceEEEEEEEeccchhhhcCCCcceeeccccchHHHH
Confidence 999999999999999999 678999999765544 5567 99999999987644 13567899999999999
Q ss_pred HHHHHhHcCCCCccEEEEEecCCcceeeccCCC---c--------------cchhhccCCCceEEEE-EEecCccCcccc
Q 002757 178 FKRACKIFSIESELLHIWDFSGQTTLYFLNDKN---K--------------FSKDCLRLSDHEILLE-LQIYGLSDSLKC 239 (884)
Q Consensus 178 ~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~---~--------------tl~~~~l~~~q~illE-~~~~~~w~~~~~ 239 (884)
.+++.++|-++.+++|||++...+...-+...+ + |+.+..... ..++|+ +...+.|+...-
T Consensus 173 ~e~vmnaf~~psD~FRLw~v~~~~~~~r~~~~s~f~~~~~~a~~~~~l~~~t~~el~~d~-s~lll~kit~np~wlvdsi 251 (823)
T COG5560 173 SERVMNAFVDPSDDFRLWDVVPEIMGLRLGLDSFFRRYRVLASDGRVLHPLTRLELFEDR-SVLLLSKITRNPDWLVDSI 251 (823)
T ss_pred HHHHHHHhcCcccceeEEEecCCcccccccCHHHHhhcchhccchhhhcccHHHHhccch-hhhHHhhhccCCccceeee
Confidence 999999999999999999987654322111100 0 011111111 111111 113344443210
Q ss_pred cccccccccccccCCCCCCCCcccccCCcccccCCCCCCCCcCccccccCCCcccHHHHHHHHhCChHHHHHHHh-cccc
Q 002757 240 REGRKDEMAVQHSNGSLTNGSFGIVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLG-DYFR 318 (884)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~-~~~~ 318 (884)
-..+.. ... + ..|.|||.|+||||||||+||||.||+.|++||++ .|..
T Consensus 252 ------------------------~~~~n~---sin-k--e~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~ 301 (823)
T COG5560 252 ------------------------VDDHNR---SIN-K--EAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEE 301 (823)
T ss_pred ------------------------cchhhh---hHH-h--hccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHh
Confidence 000000 011 1 13999999999999999999999999999999995 5999
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHHcCCCCCCcChHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 002757 319 EINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPY 398 (884)
Q Consensus 319 ~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~ 398 (884)
++|..||+|+.|.+|.+|++|+++++.++..+++|+.||..||.++..|+||.|||+|||++||||+|||+|||+.+|||
T Consensus 302 ~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~Kpy 381 (823)
T COG5560 302 SINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPY 381 (823)
T ss_pred hhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCC---ChHHHHHHHHHHhhccCCCccccccceEEEEEEEcCCCCCeeeeecCceeEEeeCCCCcceeEEEEEE
Q 002757 399 AEAKDGDGR---SDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVV 475 (884)
Q Consensus 399 ~~~~~~~~~---~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~i~C~~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~ 475 (884)
.+.++-... ..+..|++.|..|++||+|+|+|||+|.++||++|+.|+.+|++||||++|+||||.+..|.++|++|
T Consensus 382 tskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~f 461 (823)
T COG5560 382 TSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVF 461 (823)
T ss_pred cCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEE
Confidence 998865433 34568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEecceeEEcccCCcc-cccccCCCCcEEEEEecCCC
Q 002757 476 NTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPAD-SISLIRDDDQLVAYRLRKEN 554 (884)
Q Consensus 476 ~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~-~~~~i~~~d~i~~ye~~~~~ 554 (884)
|.+|...| +.+++.+.+++.+|++.+.+..|......+.++++|.++.++.++...+ .+..|.+.|.++.|+ ..
T Consensus 462 p~~g~~~p--l~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe---~~ 536 (823)
T COG5560 462 PESGRRQP--LKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYE---TN 536 (823)
T ss_pred CCCCCCCc--eEEEEeccchHHHHHHHHHHHhccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEee---cC
Confidence 99998777 6778889999999999999888887777889999999999999987666 457899999999999 44
Q ss_pred CCCCeEEEEeehhhhhhhcCCcCCCCcccCccE-EEEe-ccccChHHHHHHHHHHcCCcccC-c---cccCCCC---cCC
Q 002757 555 DKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPL-VAKV-SYLAHGLDIRNLYLELLKPFCIP-A---KDTFNNN---VTA 625 (884)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~-~~~~-~~~~~~~~i~~~~~~~~~~~~~~-~---~~~~~~~---~~~ 625 (884)
++...++++|.+.++. +++..+||.|+ ...+ ..+.-..+|.+.+.+++...... . ..++.-. .+.
T Consensus 537 ~ngi~vpvvh~~~~~g------Yks~rlFg~pflqlnv~~~~~i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es 610 (823)
T COG5560 537 DNGIEVPVVHLRIEKG------YKSKRLFGDPFLQLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREES 610 (823)
T ss_pred CCCeEEEEEecccccc------ccchhhhCCcceEEEeecchhhHHHHHHHHHHHHHHHhhcchhhhhhhhhccchhccc
Confidence 4557899999866542 46788999996 2233 33333344433333332111000 0 0000000 000
Q ss_pred CCch-hhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecCCCCccccccccCcccccCCCCCceEEEEEecchh
Q 002757 626 GSTA-IEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKL 704 (884)
Q Consensus 626 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~ 704 (884)
+... .+-.++++. + ..++..++.+ -+......|.|+|.+..
T Consensus 611 ~p~~wl~l~teid~--------------k----------------------ree~veeE~~--~n~nd~vvi~cew~ek~ 652 (823)
T COG5560 611 SPSSWLKLETEIDT--------------K----------------------REEQVEEEGQ--MNFNDAVVISCEWEEKR 652 (823)
T ss_pred Ccchhhhhhhhccc--------------h----------------------hhhhhhhhhc--cCCCcceEEeeeccccc
Confidence 0000 000000000 0 0000001111 12345567889999886
Q ss_pred hh-hhc-cccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCCCCcccCCCCCCcceeEEEEEeeecCCeEEEEE
Q 002757 705 IE-QYD-TRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHL 782 (884)
Q Consensus 705 ~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhL 782 (884)
.. .|. ...+ -..+.++ ....|||+|||++|.++|.|+..|.||||.||++++|+|+++||++|.||||||
T Consensus 653 y~~lFsy~~lw----~~~ei~~----~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihL 724 (823)
T COG5560 653 YLSLFSYDPLW----TIREIGA----AERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHL 724 (823)
T ss_pred hhhhhcCCccc----hhHHhhh----ccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeeh
Confidence 65 342 1111 0111111 126899999999999999999999999999999999999999999999999999
Q ss_pred eceeeecccccccceeEecccCCCCccccccccCCCCCceEEEEEEEEeeecCCCCeEEEEEEc-CCCCEEEEcCCccee
Q 002757 783 KRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHH-GGGQWYDFDDSHVYP 861 (884)
Q Consensus 783 KRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aVinH~G~l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~ 861 (884)
|||++.+.+++||++.|.|||.+|||+.|.....+ ....|+||||.||||++||||||||+|| .+++||+|||++|++
T Consensus 725 kRFss~rsfrdKiddlVeyPiddldLs~~~~~~~~-p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fdDsrite 803 (823)
T COG5560 725 KRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDD-PRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITE 803 (823)
T ss_pred hhhhhcccchhhhhhhhccccccccccceEEeecC-cceEEEeeeccccccccCCcceeeeeecccCCceEEecCccccc
Confidence 99999999999999999999999999999887765 4599999999999999999999999999 668999999999999
Q ss_pred cCcccccCCCeEEEEEEEec
Q 002757 862 ISQDKIKTSAAYVLFYRRVV 881 (884)
Q Consensus 862 v~~~~v~s~~AYlLFY~R~~ 881 (884)
+.+++.++++||||||||+.
T Consensus 804 vdped~vtssaYvLFyrrk~ 823 (823)
T COG5560 804 VDPEDSVTSSAYVLFYRRKS 823 (823)
T ss_pred cCccccccceeEEEEEEecC
Confidence 99999999999999999973
|
|
| >KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02663 Peptidase_C19G A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02660 Peptidase_C19D A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02671 Peptidase_C19O A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02668 Peptidase_C19L A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02667 Peptidase_C19K A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02669 Peptidase_C19M A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02664 Peptidase_C19H A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02657 Peptidase_C19A A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02658 Peptidase_C19B A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02661 Peptidase_C19E A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02659 peptidase_C19C A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02662 Peptidase_C19F A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02674 Peptidase_C19R A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >cd02673 Peptidase_C19Q A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02665 Peptidase_C19I A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02666 Peptidase_C19J A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02672 Peptidase_C19P A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02670 Peptidase_C19N A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins | Back alignment and domain information |
|---|
| >smart00695 DUSP Domain in ubiquitin-specific proteases | Back alignment and domain information |
|---|
| >PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A | Back alignment and domain information |
|---|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase | Back alignment and domain information |
|---|
| >PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A | Back alignment and domain information |
|---|
| >PTZ00044 ubiquitin; Provisional | Back alignment and domain information |
|---|
| >cd01807 GDX_N ubiquitin-like domain of GDX | Back alignment and domain information |
|---|
| >cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain | Back alignment and domain information |
|---|
| >cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 | Back alignment and domain information |
|---|
| >cd01806 Nedd8 Nebb8-like ubiquitin protein | Back alignment and domain information |
|---|
| >cd01803 Ubiquitin Ubiquitin | Back alignment and domain information |
|---|
| >cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 | Back alignment and domain information |
|---|
| >cd01763 Sumo Small ubiquitin-related modifier (SUMO) | Back alignment and domain information |
|---|
| >cd01812 BAG1_N Ubiquitin-like domain of BAG1 | Back alignment and domain information |
|---|
| >cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein | Back alignment and domain information |
|---|
| >cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B | Back alignment and domain information |
|---|
| >cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein | Back alignment and domain information |
|---|
| >PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast | Back alignment and domain information |
|---|
| >cd01795 USP48_C USP ubiquitin-specific protease | Back alignment and domain information |
|---|
| >PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade | Back alignment and domain information |
|---|
| >cd01809 Scythe_N Ubiquitin-like domain of Scythe protein | Back alignment and domain information |
|---|
| >cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 | Back alignment and domain information |
|---|
| >cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 | Back alignment and domain information |
|---|
| >cd01805 RAD23_N Ubiquitin-like domain of RAD23 | Back alignment and domain information |
|---|
| >cd01804 midnolin_N Ubiquitin-like domain of midnolin | Back alignment and domain information |
|---|
| >cd01802 AN1_N ubiquitin-like domain of AN1 | Back alignment and domain information |
|---|
| >cd01791 Ubl5 UBL5 ubiquitin-like modifier | Back alignment and domain information |
|---|
| >cd01793 Fubi Fubi ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 | Back alignment and domain information |
|---|
| >cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF | Back alignment and domain information |
|---|
| >smart00166 UBX Domain present in ubiquitin-regulatory proteins | Back alignment and domain information |
|---|
| >cd01767 UBX UBX (ubiquitin regulatory X) domain | Back alignment and domain information |
|---|
| >PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins | Back alignment and domain information |
|---|
| >PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway | Back alignment and domain information |
|---|
| >cd01771 Faf1_UBX Faf1 UBX domain | Back alignment and domain information |
|---|
| >cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain | Back alignment and domain information |
|---|
| >cd01813 UBP_N UBP ubiquitin processing protease | Back alignment and domain information |
|---|
| >cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain | Back alignment and domain information |
|---|
| >smart00213 UBQ Ubiquitin homologues | Back alignment and domain information |
|---|
| >cd01769 UBL Ubiquitin-like domain of UBL | Back alignment and domain information |
|---|
| >PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 884 | ||||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 4e-63 | ||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 2e-43 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 4e-40 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 4e-30 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 1e-37 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 4e-30 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 5e-33 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 1e-25 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 6e-33 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 1e-25 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 7e-33 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 1e-25 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 8e-33 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 2e-25 | ||
| 3i3t_A | 355 | Crystal Structure Of Covalent Ubiquitin-usp21 Compl | 1e-24 | ||
| 3mtn_A | 373 | Usp21 In Complex With A Ubiquitin-based, Usp21-spec | 1e-24 | ||
| 2y5b_A | 370 | Structure Of Usp21 In Complex With Linear Diubiquit | 1e-24 | ||
| 3mhh_A | 476 | Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE | 1e-17 | ||
| 4fip_A | 476 | Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- | 1e-17 | ||
| 3m99_A | 471 | Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod | 1e-17 | ||
| 1nb8_A | 353 | Structure Of The Catalytic Domain Of Usp7 (Hausp) L | 2e-05 | ||
| 1nbf_A | 353 | Crystal Structure Of A Ubp-Family Deubiquitinating | 3e-05 | ||
| 2f1z_A | 522 | Crystal Structure Of Hausp Length = 522 | 4e-05 |
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
|
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 | Back alignment and structure |
| >pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 | Back alignment and structure |
| >pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 | Back alignment and structure |
| >pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 | Back alignment and structure |
| >pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 | Back alignment and structure |
| >pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 | Back alignment and structure |
| >pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 | Back alignment and structure |
| >pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 | Back alignment and structure |
| >pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
Score = 296 bits (758), Expect = 3e-92
Identities = 98/222 (44%), Positives = 131/222 (59%), Gaps = 6/222 (2%)
Query: 251 HSNGSLTNGSFGIVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVD 310
+ ++ S +RN + F G LTGL+NLGNTC+MNS LQCL + P L D
Sbjct: 35 YPKAEISRLSASQIRNLNPVFGGSGP-----ALTGLRNLGNTCYMNSILQCLCNAPHLAD 89
Query: 311 YFL-GDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSG 369
YF Y +IN N LG GE+A FG +++ LW +SP+ FK + + QF+G
Sbjct: 90 YFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAG 149
Query: 370 FNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIV 429
++Q DSQELL FL+DGLHEDLN+ + + ++ D D A+ WQ H N+SIIV
Sbjct: 150 YSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIV 209
Query: 430 DLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMT 471
L QGQ+KST+ C C K S TF+ FMYLSLPL ST+ +
Sbjct: 210 ALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQ 251
|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} Length = 231 | Back alignment and structure |
|---|
| >4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A Length = 217 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} Length = 530 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 884 | ||||
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 5e-43 | |
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 3e-36 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 7e-39 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 2e-35 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 4e-35 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 2e-21 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 2e-20 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 2e-18 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 2e-20 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 3e-20 | |
| d1w6va1 | 120 | d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hy | 3e-04 |
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 157 bits (398), Expect = 5e-43
Identities = 91/182 (50%), Positives = 118/182 (64%), Gaps = 1/182 (0%)
Query: 282 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLL 340
LTGL+NLGNTC+MNS LQCL + P L DYF + Y +IN N LG GE+A FG ++
Sbjct: 14 ALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIM 73
Query: 341 RKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAE 400
+ LW +SP+ FK + + QF+G++Q DSQELL FL+DGLHEDLN+ + +
Sbjct: 74 KALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYK 133
Query: 401 AKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSL 460
++ D D A+ WQ H N+SIIV L QGQ+KST+ C C K S TF+ FMYLSL
Sbjct: 134 EENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSL 193
Query: 461 PL 462
PL
Sbjct: 194 PL 195
|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
| >d1w6va1 d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hydrolase 15 {Human (Homo sapiens) [TaxId: 9606]} Length = 120 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 884 | |||
| d1nbfa_ | 347 | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU | 100.0 | |
| d2gfoa1 | 348 | Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho | 100.0 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 100.0 | |
| d2hd5a1 | 336 | Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum | 100.0 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 100.0 | |
| d1w6va1 | 120 | Ubiquitin carboxyl-terminal hydrolase 15 {Human (H | 99.91 | |
| d1wjna_ | 97 | Tubulin-folding protein TbcE {Mouse (Mus musculus) | 95.52 | |
| d1t0ya_ | 90 | Ubiquitin-like domain of tubulin folding cofactor | 94.93 | |
| d1j8ca_ | 103 | Ubiquitin-like N-terminal domain of PLIC-2 {Human | 94.75 | |
| d1yqba1 | 84 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 94.59 | |
| d1v6ea_ | 95 | Ubiquitin-like domain of tubulin folding cofactor | 93.69 | |
| d1v86a_ | 95 | hypothetical D7wsu128e protein {Mouse (Mus musculu | 93.39 | |
| d1we6a_ | 111 | Splicing factor 3 subunit 1, C-terminal domain {Th | 93.34 | |
| d2c9wb1 | 103 | Elongin B {Human (Homo sapiens) [TaxId: 9606]} | 92.85 | |
| d1zkha1 | 86 | Splicing factor 3 subunit 1, C-terminal domain {Hu | 91.88 | |
| d2bwfa1 | 73 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.68 | |
| d1wx8a1 | 83 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 91.65 | |
| d1euvb_ | 79 | SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy | 91.49 | |
| d1v5oa_ | 102 | 1700011n24rik protein {Mouse (Mus musculus) [TaxId | 91.14 | |
| d1wh3a_ | 87 | 2'-5'-oligoadenylate synthetase-like protein, OASL | 90.38 | |
| d1uh6a_ | 100 | Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu | 90.34 | |
| d1z2ma2 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 90.16 | |
| d2zeqa1 | 78 | Ubiquitin-like domain of parkin {Mouse (Mus muscul | 89.62 | |
| d1ogwa_ | 76 | Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | 89.19 | |
| d1m94a_ | 73 | Ubiquitin-like modifier protein hub1 {Baker's yeas | 89.16 | |
| d1wxva1 | 81 | Bag-family molecular chaperone regulator-1 {Human | 88.14 | |
| d1bt0a_ | 73 | Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI | 87.63 | |
| d1v5ta_ | 90 | 8430435i17rik protein {Mouse (Mus musculus) [TaxId | 87.49 | |
| d1wjua_ | 100 | NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens | 87.39 | |
| d1ttna1 | 80 | Dendritic cell-derived ubiquitin-like protein {Hum | 86.46 | |
| d1h8ca_ | 82 | Fas-associated factor 1, Faf1 {Human (Homo sapiens | 85.39 | |
| d1z2ma1 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 84.86 | |
| d1wgha_ | 116 | Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu | 84.1 | |
| d1v2ya_ | 105 | Ubiquitin-like protein 3300001g02rik {Mouse (Mus m | 82.85 | |
| d1wj4a_ | 124 | Hypothetical protein KIAA0794 {Human (Homo sapiens | 81.23 | |
| d1oqya4 | 77 | Ubiquitin-like domain of Rad23 homolog A (Hhr23a) | 80.86 | |
| d2uyzb1 | 77 | SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax | 80.25 |
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=469.78 Aligned_cols=296 Identities=26% Similarity=0.426 Sum_probs=254.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 76744420389963178999998287479999982231112789999990689999999999971999987696999999
Q 002757 280 CLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSK 359 (884)
Q Consensus 280 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~~l~~~~~~~n~~n~~~~~~~l~~~l~~Ll~~l~~~~~~~i~p~~~~~~ 359 (884)
.+|++||.|+||||||||+||||+++|+|+++++..... .......+..+++.+|..|+.+. .++.|..+...
T Consensus 3 ~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~------~~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~~~~~ 75 (347)
T d1nbfa_ 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE------GDDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKS 75 (347)
T ss_dssp SSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCT------TCCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHH
T ss_pred CCCCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHCCCC------CCCCCCHHHHHHHHHHHHHHCCC-CCCCHHHHHHH
T ss_conf 999729863996569999999998479999999707766------88641269999999999986579-97571999976
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
Q ss_conf 96309988989987789999999999998731013788753469999990899999999854057984201465399979
Q 002757 360 LARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKST 439 (884)
Q Consensus 360 i~~~~~~F~g~~QqDa~Efl~~LLd~L~edln~~~~kpy~e~~d~dg~~d~~~a~e~W~~~~~rn~SiI~dlF~G~l~st 439 (884)
++ .+.|.++.|||||||+.+||+.|++++... ...++|.++|+|++.++
T Consensus 76 ~~--~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~-----------------------------~~~~~i~~lF~g~~~~~ 124 (347)
T d1nbfa_ 76 FG--WETLDSFMQHDVQELCRVLLDNVENKMKGT-----------------------------CVEGTIPKLFRGKMVSY 124 (347)
T ss_dssp TT--CCGGGGGSCBCHHHHHHHHHHHHHHHHTTS-----------------------------TTTTHHHHHHCEEEEEE
T ss_pred HC--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------CCCCCCCCEECEEEEEE
T ss_conf 23--000206778779999999999888887503-----------------------------33456550113478986
Q ss_pred EECCCCCCEEEEECCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 98289997333105852387508998400379999908999988213898079999899999999882379886089999
Q 002757 440 LVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAE 519 (884)
Q Consensus 440 l~C~~C~~~SvtfdpF~~LSLplP~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 519 (884)
+.|..|++.+.++++|+.|+|++|..
T Consensus 125 ~~C~~C~~~s~~~e~f~~l~L~i~~~------------------------------------------------------ 150 (347)
T d1nbfa_ 125 IQCKEVDYRSDRREDYYDIQLSIKGK------------------------------------------------------ 150 (347)
T ss_dssp EEESSSCCEEEEEEEESSEEEECTTC------------------------------------------------------
T ss_pred EEECCCCCEEEEECCCCCCCCCCCCC------------------------------------------------------
T ss_conf 78078661422322322331011233------------------------------------------------------
Q ss_pred EECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf 73452687124873323345889919999936789999739998401366651287678872248538999636668577
Q 002757 520 IYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLD 599 (884)
Q Consensus 520 i~~~~~~~~~~~~~~~~~~i~~~~~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~~~ 599 (884)
T Consensus 151 -------------------------------------------------------------------------------- 150 (347)
T d1nbfa_ 151 -------------------------------------------------------------------------------- 150 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 99999987087656865657887689983033331003553358998878898777999997301797469997346522
Q 002757 600 IRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKI 679 (884)
Q Consensus 600 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 679 (884)
T Consensus 151 -------------------------------------------------------------------------------- 150 (347)
T d1nbfa_ 151 -------------------------------------------------------------------------------- 150 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 35755434799971499997262135310111225662110258889999998889999998108542599994128898
Q 002757 680 VMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGC 759 (884)
Q Consensus 680 ~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~wyC~~C 759 (884)
.++.+||..++.+|.+.+++.|.|+.|
T Consensus 151 -----------------------------------------------------~~~~~~l~~~~~~e~l~~~~~~~~~~~ 177 (347)
T d1nbfa_ 151 -----------------------------------------------------KNIFESFVDYVAVEQLDGDNKYDAGEH 177 (347)
T ss_dssp -----------------------------------------------------CBHHHHHHHHTCCEEECGGGCEECSTT
T ss_pred -----------------------------------------------------CCHHHHHHHHCCHHEECCCCCCCCCCC
T ss_conf -----------------------------------------------------310356776412022414310024567
Q ss_pred CCCCEEEEEEEEEECCCEEEEEEECEEEEC--CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf 885203899993005984899971336404--301343126741467888655323458887844889999993102799
Q 002757 760 KKHCQASKKLDLWRLPEILVIHLKRFSYSR--FSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGG 837 (884)
Q Consensus 760 k~~~~AtKk~~iw~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~~~~~~~~~~~~YdL~AV~nH~G~l~g 837 (884)
..+.|.|+..|+++|+||+||||||.+.. ..+.|+++.|.|| +.|||++|+..........|+|+||++|.|...+
T Consensus 178 -~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~ 255 (347)
T d1nbfa_ 178 -GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHG 255 (347)
T ss_dssp -CEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEEEETTE
T ss_pred -CCEECCEEEEEEECCCHHEEEEEEEEECCCCCCCCCCCCEEEEE-EEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCC
T ss_conf -63012178999826980047510013422357310157247645-4413465323333457644056799984587879
Q ss_pred CEEEEEEEC-CCCCEEEECCCCCEECCCCCCCC---------------CCEEEEEEEEECC
Q ss_conf 749999992-89989997599520219232469---------------9808999899158
Q 002757 838 GHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKT---------------SAAYVLFYRRVVE 882 (884)
Q Consensus 838 GHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~~---------------~~AYvLFY~R~~~ 882 (884)
|||+||+++ .+++||+|||+.|+++++++|.. .+||||||+|++.
T Consensus 256 GHY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~~~ 316 (347)
T d1nbfa_ 256 GHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 316 (347)
T ss_dssp EEEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEGGG
T ss_pred CEEEEEEECCCCCEEEEEECCCEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCC
T ss_conf 9899806138999899998996089889999875158876554557789779999996372
|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1w6va1 d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hydrolase 15 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|