Citrus Sinensis ID: 002761

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880---
Protein Sequence
MSLFLRTPFPFISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGETSVDDASS
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHcHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccEEcccccHHHHHHHHHHHHHHHcHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccHHHHHHHHHcccccccccHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHcccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccHHcHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccEEEEcccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHEHcccccccccEEccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHEccccccccccccccccccccccccccccccHHHHHccHHHHHHccEEEcccccccccHccccHHHcccHHHHHHHHHccccccccccEEccHHHcccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHcHcHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mslflrtpfpfispvlsksqtgvvpirsamsspekkTRRKKQQRRQQkhgdsllstngsvvsAAEQGLRLIFMEELMQHArnrdaprvnDVIYDMIAaglspgprsfHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGakgglratdEIYDLMIAedckagdhsNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAtfenmeygedymkpdtetyNCVIQAYTRAESYDRVQDVAELLGMMVEDhkrlqpnvKTYALLVECFTKYCAVTEAIRHFRALQnyeggtkvlhnegnfgdpLSLYLRALCREGRIIELLEALEAMakdnqpvppramilSRKYRTLVSSWIEPLQEEAELGYEIDYIARYIseggltgerkrwvprrgktpldpdavgfiysnpmetsFKQRCLEDGKKYHRKLLRTLQnegpavlgdvsesdYVRVEERLKKLIkgpeqhvlkpkaASKMVVSELKEEldaqglptdgtrNVLYQRVQKARRInrsrgrplwvppveeeeeeVDEEVDELISRIkleegntefWKRRFlgeglngrhdkavemdeselsdvldddvtdveyvakdeeadeeeeveqaepesqdvDRVKEKLVEAKKPLQMIGVQLlkdsdqttttskrsmkrssrmveddddedwfpedpfEAFKEMRkrkvfdvsdMYTIADAWgwtwereitnrppqkwsQEWEVELAIQIMLKVIElggtptigDCAVIIRAAIRAPLPSAFLKILQKTHslgyvfgsplYDEIISLCLDLGELDAAVAIVADMettgiavpdqtldRVITSrqtgetsvddass
Flexible Loop (DISEMBL)
mslflrtpfpfispvlsksqtgvvpirsamsspekktrrkkqqrrqqkhgdsllstngsvvSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANkvflrgakgglrATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEamakdnqpvppraMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYiseggltgerkrwvprrgktpldpdAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRtlqnegpavlgdvsesdYVRVEERLKklikgpeqhvlkpkaASKMVVSELKEEldaqglptdgtrnvlYQRVQkarrinrsrgrplwvppveeeeeevdeEVDELIsrikleegntefwkrrflgeglngrhDKAVemdeselsdvldddvtDVEYVAKdeeadeeeeveqaepesqdvdrvKEKLVEakkplqmigvqllkdsdqttttskrsmkrssrmveddddedwfpeDPFEAFKemrkrkvfdvsdMYTIADAWGWTWEREITNrppqkwsqEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETtgiavpdqtldrvitsrqtgetsvddass
Low Complexity Region (SEG)
MSLFLRTPFPFISPVLSKSQTGVVPIRSAMSSPEkktrrkkqqrrqqkHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWvppveeeeeevdeevdeLISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMdeselsdvldddvtdveyvakdeeadeeeeveqaepeSQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQttttskrsmkrssrmVeddddedwfpedpfeAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGETSVDDASS
Disordered region (IsUnstruct)
******TPFPFIS***************************************************EQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK*****PPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVS*SDYVRVE********************************************VLYQ**********************************LISRIKLEEGNTEFWKRRFLGEGL*******************************************************************************************************************KRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRV****************
Disordered Region (DISOPRED)
*******PFPFISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDE****************************KKPLQMIGVQLLK************************DEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDR*****************
Disordered Region (DISEMBL)
MSLFLRTPFPFISPVLSKSQTGVVPI***************************LSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPP**************LISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVA**********************RVKEKLVEAKKPLQMIGVQLLKD************************EDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITS*************
Disordered Region (DISPRO)
*SLFLRTPFPFISPVLSKSQTGVVP************************GDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEGL***************************************EVEQA****QDVDRVKEKLVEAKKPLQMIGVQLLKDS***********************EDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSR************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLFLRTPFPFISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGETSVDDASS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	883	2.2.26 [Sep-21-2011]
Q0WMY5	952	Pentatricopeptide repeat-	no	no	0.361	0.335	0.203	2e-10
O04491	607	Putative pentatricopeptid	no	no	0.249	0.362	0.244	2e-09
Q9ASZ8	621	Pentatricopeptide repeat-	no	no	0.276	0.392	0.234	6e-09
Q9SR00	602	Pentatricopeptide repeat-	no	no	0.250	0.367	0.244	1e-08
Q8GYP6	860	Pentatricopeptide repeat-	no	no	0.293	0.301	0.207	4e-08
Q9FKR3	596	Pentatricopeptide repeat-	no	no	0.225	0.333	0.255	5e-08
Q9M9X9	987	Pentatricopeptide repeat-	no	no	0.279	0.250	0.258	6e-08
Q9SAK0	836	Pentatricopeptide repeat-	no	no	0.295	0.312	0.209	9e-08
Q0WPZ6	874	Pentatricopeptide repeat-	no	no	0.375	0.379	0.228	1e-07
O49436	660	Pentatricopeptide repeat-	no	no	0.277	0.371	0.217	1e-07

>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/349 (20%), Positives = 137/349 (39%), Gaps = 30/349 (8%)

Query: 71  IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
           I+ + +  H +  +  R   ++ +M   G+      +H ++  YT+  D +  +   KR 
Sbjct: 416 IYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRL 475

Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKY 188
              G  P   T   L  L+   G  +K LE+   M  E + ++++  + +++   V+ K 
Sbjct: 476 KECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLK-TYSMMINGFVKLKD 534

Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
             +A  VF    K G++    +Y+ +I+  C  G+   A++   EM+      TT  F  
Sbjct: 535 WANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMP 594

Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR---VQDVAEL 305
           ++   A  G    +   F+ M        P   T+N +I         ++   + D   L
Sbjct: 595 IIHGYAKSGDMRRSLEVFDMMRRCG--CVPTVHTFNGLINGLVEKRQMEKAVEILDEMTL 652

Query: 306 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP 365
            G+   +H        TY  +++ +       +A  +F  LQN      +   E      
Sbjct: 653 AGVSANEH--------TYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEA----- 699

Query: 366 LSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
               L+A C+ GR+   L   + M+  N  +P  + +    Y  L+  W
Sbjct: 700 ---LLKACCKSGRMQSALAVTKEMSARN--IPRNSFV----YNILIDGW 739

May play a role in the plastid ribosome biogenesis.
Arabidopsis thaliana (taxid: 3702)

>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 5/225 (2%)

Query: 70  LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
           +IF   +  H+RN +   + +    M++ GL P    ++ LV  +  NGD   A + +  
Sbjct: 346 VIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDG 405

Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKY 188
            +  G+RP   T   L   F   G     LEI   M++   ++ R  +  LV  + +   
Sbjct: 406 MIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGR 465

Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
           + DA +      + G++  D  Y +M+   CK GD     ++  EM++ G + +   +N 
Sbjct: 466 VIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNV 525

Query: 249 LLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTR 292
           LL+     G  + A    + M   G   + PD  TYN +++ + R
Sbjct: 526 LLNGLCKLGQMKNADMLLDAMLNIG---VVPDDITYNTLLEGHHR 567

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 12/256 (4%)

Query: 95  MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
           M+  G  P   + + LV    LNG    A+  + R +  G +P   T   + ++    G 
Sbjct: 168 MVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQ 227

Query: 155 ATKGLEILAAME--KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
               +E+L  ME  KI  D  + + I+++ L ++  L++A  +F      G +A   IY 
Sbjct: 228 TALAMELLRKMEERKIKLDAVK-YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYT 286

Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IPEVAFATFENMEY 271
            +I   C AG   +  ++  +M           F+ L+ C    G + E      E ++ 
Sbjct: 287 TLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQR 346

Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
           G   + PDT TY  +I  + +    D+      +L +MV   K   PN++T+ +L+  + 
Sbjct: 347 G---ISPDTVTYTSLIDGFCKENQLDKAN---HMLDLMVS--KGCGPNIRTFNILINGYC 398

Query: 332 KYCAVTEAIRHFRALQ 347
           K   + + +  FR + 
Sbjct: 399 KANLIDDGLELFRKMS 414

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 20/241 (8%)

Query: 95  MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
           M +    P   ++  L+     +G  E AM+ LK     G+ P   +   L   F  +G 
Sbjct: 324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 383

Query: 155 ATKGLEILAAM-------EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
               +E L  M       + +NY+       ++  L +N   + A ++F +  + G    
Sbjct: 384 LDVAIEFLETMISDGCLPDIVNYNT------VLATLCKNGKADQALEIFGKLGEVGCSPN 437

Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
              Y+ M +    +GD   AL +  EM + G       +N ++SC    G+ + AF    
Sbjct: 438 SSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLV 497

Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
           +M   E    P   TYN V+  + +A    R++D   +L  MV +  R  PN  TY +L+
Sbjct: 498 DMRSCE--FHPSVVTYNIVLLGFCKAH---RIEDAINVLESMVGNGCR--PNETTYTVLI 550

Query: 328 E 328
           E
Sbjct: 551 E 551

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 112/270 (41%), Gaps = 11/270 (4%)

Query: 80  ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
            R +    +N ++ +M+  G  P   +++ L+ +Y        AM+   +   AG +P  
Sbjct: 375 GRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDR 434

Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLR 198
            T   L  +    G     +++   M+          + +++  L +  +L  A+K+F  
Sbjct: 435 VTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCE 494

Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
               G       Y++M+    KA ++ NAL++  +M+ AG       ++ ++     CG 
Sbjct: 495 MVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY 554

Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
            E A A F  M+  +    PD   Y  ++  + +A + ++     + +      H  L+P
Sbjct: 555 LEEAEAVFTEMQ--QKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAM-----LHAGLRP 607

Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQN 348
           NV T   L+  F +   + EA   +  LQN
Sbjct: 608 NVPTCNSLLSTFLRVNKIAEA---YELLQN 634

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730 OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 20/219 (9%)

Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
           QA  +L+  LV+ +  +   K+F +  K G+ A   +Y++++    K+GD   A ++  E
Sbjct: 169 QACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSE 228

Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
           ME  G     F +N L+S      +   A +  + ME     + P+  TYN  I  ++R 
Sbjct: 229 MEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRME--RSGVAPNIVTYNSFIHGFSRE 286

Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
               R+++   L   + +D   +  N  TY  L++ + +   + EA+R  R +    G +
Sbjct: 287 ---GRMREATRLFREIKDD---VTANHVTYTTLIDGYCRMNDIDEALR-LREVMESRGFS 339

Query: 354 K--VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 390
              V +N           LR LC +GRI E    L  M+
Sbjct: 340 PGVVTYNS---------ILRKLCEDGRIREANRLLTEMS 369

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 109/267 (40%), Gaps = 20/267 (7%)

Query: 87  RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL-IAL 145
           R   V+  M+  G  P P+ F+ LV AY  +GDH  A   LK+ +  G  P +    I +
Sbjct: 355 RCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI 414

Query: 146 ARLFGSKGLATKGLEILAAMEKINYDIRQAWLIL----VEELVR-----NKYLEDANKVF 196
             + G K   +   ++L   EK   ++  A ++L    V    R      KY E A  V 
Sbjct: 415 GSICGDKD--SLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKY-EKAFSVI 471

Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
                 G       Y  ++   C A     A  +  EM+  G +A  + +  ++      
Sbjct: 472 REMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKA 531

Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
           G+ E A   F  M   E    P+  TY  +I AY +A+   +V    EL   M+ +    
Sbjct: 532 GLIEQARKWFNEMR--EVGCTPNVVTYTALIHAYLKAK---KVSYANELFETMLSEG--C 584

Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHF 343
            PN+ TY+ L++   K   V +A + F
Sbjct: 585 LPNIVTYSALIDGHCKAGQVEKACQIF 611

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490, mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 119/272 (43%), Gaps = 11/272 (4%)

Query: 81  RNRDAPRVNDVIYDMIAAGLSPGPRSFHGL--VVAYTLNGDH-EGAMHSLKRELSAGVRP 137
           + RD   +  +  +M+    S G  SF+    V+ Y    +  E A    K+   +G + 
Sbjct: 217 QGRDFVGIQSLFEEMVQDSSSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKI 276

Query: 138 LHETLIALARLFGSKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVF 196
             +T   L  LF +KGL  K  EI  +MEK +  +    + +++  L ++  L+ A K+F
Sbjct: 277 DTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLF 336

Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
            +  +  LR +  ++  ++    KAG    ++++  EM+  G   +   F  L+   A  
Sbjct: 337 QQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKA 396

Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
           G  + A   ++ M+  +   +P+   Y  +I+++ ++   +    V + +     +    
Sbjct: 397 GKLDTALRLWDEMK--KSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDM-----EKAGF 449

Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
            P   TY+ L+E       V  A++ + ++ N
Sbjct: 450 LPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTN 481

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 145/359 (40%), Gaps = 27/359 (7%)

Query: 94  DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
           DM+  G++P   +F+ L+ A   +   + A          G +P   T   L R +   G
Sbjct: 137 DMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAG 196

Query: 154 LATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
           L  KGLE+L AME       +  +  +V    R    +D+ K+  +  + GL      ++
Sbjct: 197 LTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFN 256

Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMA----TTFHFNHLLSCQATCGIPEVAFATFEN 268
             I+  CK G   +A  I  +ME    +      +  +N +L      G+ E A   FE+
Sbjct: 257 SRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFES 316

Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
           +   +D      ++YN  +Q   R   +   + V   L  M +  K + P++ +Y +L++
Sbjct: 317 IRENDDL--ASLQSYNIWLQGLVRHGKFIEAETV---LKQMTD--KGIGPSIYSYNILMD 369

Query: 329 CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA 388
              K   +++A +    L    G   V  +   +G      L   C  G++      L+ 
Sbjct: 370 GLCKLGMLSDA-KTIVGLMKRNG---VCPDAVTYG----CLLHGYCSVGKVDAAKSLLQE 421

Query: 389 MAKDNQPVPPRAMILSRKYRTL-----VSSWIEPLQEEAELGYEIDYIARYISEGGLTG 442
           M ++N    P A   +    +L     +S   E L++  E GY +D +   I   GL G
Sbjct: 422 MMRNN--CLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCG 478

Arabidopsis thaliana (taxid: 3702)

>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 115/285 (40%), Gaps = 40/285 (14%)

Query: 80  ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
            +  D  RV  ++ +M   G  P   +++ L+    L G  + A+  L+R +S+   P  
Sbjct: 268 CKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPND 327

Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLR 198
            T   L      +  AT  + +L++ME+  Y + Q  + +L+  L +    E+A  ++ +
Sbjct: 328 VTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRK 387

Query: 199 GAKGGLRAT--------------------DEIYDLMIAEDC---------------KAGD 223
            A+ G +                       EI + MIA  C               K G 
Sbjct: 388 MAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGL 447

Query: 224 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETY 283
              A+++  EM+  G     F ++ L+     CG+  V  A     +     +KPDT  Y
Sbjct: 448 CEEAVQVWKEMDKTGCSRNKFCYSVLI--DGLCGVGRVKEAMMVWSKMLTIGIKPDTVAY 505

Query: 284 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
           + +I+      S D    +     M+ ++  + QP+V TY +L++
Sbjct: 506 SSIIKGLCGIGSMDAALKLYH--EMLCQEEPKSQPDVVTYNILLD 548

May play a role in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	883
255562037	889	pentatricopeptide repeat-containing prot	0.979	0.973	0.774	0.0
359476532	884	PREDICTED: uncharacterized protein LOC10	0.993	0.992	0.769	0.0
334185070	910	plastid transcriptionally active 3 [Arab	0.984	0.954	0.741	0.0
356533668	887	PREDICTED: uncharacterized protein LOC10	0.956	0.952	0.763	0.0
356574857	887	PREDICTED: uncharacterized protein LOC10	0.958	0.953	0.771	0.0
6721160	913	hypothetical protein [Arabidopsis thalia	0.984	0.951	0.739	0.0
224144652	887	predicted protein [Populus trichocarpa]	0.989	0.985	0.756	0.0
297833108	914	hypothetical protein ARALYDRAFT_477686 [	0.985	0.951	0.739	0.0
357441259	2047	Pentatricopeptide repeat-containing prot	0.952	0.410	0.715	0.0
357140590	885	PREDICTED: uncharacterized protein LOC10	0.917	0.915	0.703	0.0

>gi|255562037|ref|XP_002522027.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223538831|gb|EEF40431.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score = 1365 bits (3533), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 699/902 (77%), Positives = 779/902 (86%), Gaps = 37/902 (4%)

Query: 3   LFLRTPF--PFISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQ----QKHGDSLLST 56
           +FL +P   P   P    S  GVV      ++ EKK+RRKKQ  +Q    +K+ +S+L  
Sbjct: 1   MFLLSPPAPPLFKPHSFPSINGVV----CSTTVEKKSRRKKQPHQQKQQLEKNDNSILP- 55

Query: 57  NGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTL 116
             +V++AAE+ LR  FMEELM  ARNRDA  V+DVIYDM+AAGLSPGPRSFHGL+VAY L
Sbjct: 56  --AVITAAEKTLRFNFMEELMDRARNRDAVGVSDVIYDMVAAGLSPGPRSFHGLIVAYCL 113

Query: 117 NGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAW 176
           NGD EGAM SL+RELS G+RPLHET +AL RLFGSKG A++GLEILAAMEK+ YDIR AW
Sbjct: 114 NGDIEGAMQSLRRELSQGIRPLHETFLALIRLFGSKGHASRGLEILAAMEKLKYDIRLAW 173

Query: 177 LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA 236
           ++LVEELV+NKY+EDANKVFL+GAKGGLRATDE+YD MI EDCK GDHSNALEIAYEMEA
Sbjct: 174 IVLVEELVKNKYMEDANKVFLKGAKGGLRATDELYDYMIEEDCKVGDHSNALEIAYEMEA 233

Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG-EDYMKPDTETYNCVIQAYTRAES 295
           AGRMATTFHFN LLS QATCGIPE+AFATFENMEYG E+YMKPDTETYN VIQAYTRAES
Sbjct: 234 AGRMATTFHFNCLLSVQATCGIPEIAFATFENMEYGGEEYMKPDTETYNWVIQAYTRAES 293

Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV 355
           YDRVQDVAELLGMMVEDHKRLQPNV+TYALLVECFTKYC V EAIRHFRALQN+EGGTKV
Sbjct: 294 YDRVQDVAELLGMMVEDHKRLQPNVRTYALLVECFTKYCVVREAIRHFRALQNFEGGTKV 353

Query: 356 LHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 415
           LH +GNFGDPLSLYLRALCREGRI+ELLEALEAM +DNQP+PPRAMILSRKYRTLVSSWI
Sbjct: 354 LHYDGNFGDPLSLYLRALCREGRIVELLEALEAMGRDNQPIPPRAMILSRKYRTLVSSWI 413

Query: 416 EPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQ 475
           EPLQEEAELGYEIDY+ARY++EGGLTGERKRWVPRRGKTPLDPDA GFIYSNPMETSFKQ
Sbjct: 414 EPLQEEAELGYEIDYVARYVAEGGLTGERKRWVPRRGKTPLDPDAAGFIYSNPMETSFKQ 473

Query: 476 RCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKM 535
           RC+ED K +HRKLLRTL NEG A LG+ SESDY+RV ERLKK+IKGP+Q+VLKPKAASKM
Sbjct: 474 RCIEDWKVHHRKLLRTLLNEGLAALGEASESDYLRVVERLKKIIKGPDQNVLKPKAASKM 533

Query: 536 VVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDEL 595
           VVSELKEEL+AQGLP DGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEE+DE+
Sbjct: 534 VVSELKEELEAQGLPIDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEELDEI 593

Query: 596 ISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEEADE 655
           ISRIKLEEGNTEFWKRRFLGEGLNG + + + + +SEL DVLDD       V   E+AD+
Sbjct: 594 ISRIKLEEGNTEFWKRRFLGEGLNGSNLQPMSVAKSELPDVLDD-------VDAIEDADK 646

Query: 656 -------------EEEVEQAEPESQDVDR-VKEKLVEAKKPLQMIGVQLLKDSDQTTTTS 701
                        E EVE  + E+QDVDR VKEK VEAKKPLQMIGVQLLKDSD  TT S
Sbjct: 647 EVEDEEADDEEEAEAEVEVEQTENQDVDRVVKEKEVEAKKPLQMIGVQLLKDSDHLTTRS 706

Query: 702 KRSMKRSSRM-VEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITN 760
           K+S +RS+R  VEDD D+DWFPEDPFEAFKE+R+RKVFDV DMYTIAD WGWTWEREI N
Sbjct: 707 KKSKRRSARASVEDDADDDWFPEDPFEAFKELRERKVFDVEDMYTIADVWGWTWEREIKN 766

Query: 761 RPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSL 820
           RPPQKWSQEWEVELAI++MLK  +L GTPTIGDCA+I+RAAIRAP+PSAFLKILQ THSL
Sbjct: 767 RPPQKWSQEWEVELAIKLMLKA-QLSGTPTIGDCAMILRAAIRAPMPSAFLKILQTTHSL 825

Query: 821 GYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGETSVDD 880
           GY FGSPLYDE+ISLCLD+GELDAA+AIVAD+E+TGI VPDQTLDRVI++RQ  +  VD+
Sbjct: 826 GYTFGSPLYDEVISLCLDIGELDAAIAIVADLESTGITVPDQTLDRVISARQAADNPVDE 885

Query: 881 AS 882
            S
Sbjct: 886 TS 887

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476532|ref|XP_002268094.2| PREDICTED: uncharacterized protein LOC100241547 [Vitis vinifera] gi|296085161|emb|CBI28656.3| unnamed protein product [Vitis vinifera]

 Score = 1352 bits (3498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 680/884 (76%), Positives = 775/884 (87%), Gaps = 7/884 (0%)

Query: 2   SLFLRTPFPFISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVV 61
           SL      PF SP  +  +   + + SA+SSPEK+ RRKK+   +Q   DS ++   + V
Sbjct: 3   SLLTYAHLPFKSPYPTNPRR-TLTLTSAISSPEKRPRRKKKT--KQPKEDSFVAV--TAV 57

Query: 62  SAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHE 121
           SA E+ LRL FMEELM+ AR+ D   V++V YDM+AAGLSPGPRSFHGL+V+  LNGD E
Sbjct: 58  SAGEKALRLTFMEELMERARSADTAGVSEVFYDMVAAGLSPGPRSFHGLIVSTVLNGDDE 117

Query: 122 GAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVE 181
           GAM SL+RELSAG+RPLHET +AL RLFGSKG AT+GLEILAAMEK+N+DIR+AWL+LVE
Sbjct: 118 GAMQSLRRELSAGLRPLHETFVALIRLFGSKGYATRGLEILAAMEKLNFDIRKAWLVLVE 177

Query: 182 ELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA 241
           ELVR+ +LEDANKVFL+GAKGGLRAT+E+YDL+I EDCK GDHSNAL IAYEMEAAGRMA
Sbjct: 178 ELVRHNHLEDANKVFLKGAKGGLRATNELYDLLIEEDCKVGDHSNALTIAYEMEAAGRMA 237

Query: 242 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQD 301
           TT+HFN LLS QATCGIPE+AFATFENMEYGEDYMKPDTETYN VIQAYTRAESYDRVQD
Sbjct: 238 TTYHFNCLLSVQATCGIPEIAFATFENMEYGEDYMKPDTETYNWVIQAYTRAESYDRVQD 297

Query: 302 VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGN 361
           VAELLGMMVEDHKRLQPNVKTYALLVEC TKYC V EAIRHFRAL+N+EGGTKVLH+EGN
Sbjct: 298 VAELLGMMVEDHKRLQPNVKTYALLVECLTKYCVVREAIRHFRALKNFEGGTKVLHDEGN 357

Query: 362 FGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEE 421
           FGDPLSLYLRALCREGRI+ELL+ALEAMAKDNQP+PPRAMILSRKYRTLVSSWIEPLQEE
Sbjct: 358 FGDPLSLYLRALCREGRIVELLDALEAMAKDNQPIPPRAMILSRKYRTLVSSWIEPLQEE 417

Query: 422 AELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDG 481
           AELGYEIDYIARYI+EGGLTG+RKRWVPRRGKTPLDPDA+GFIYSNPMETSFKQRCLED 
Sbjct: 418 AELGYEIDYIARYIAEGGLTGDRKRWVPRRGKTPLDPDALGFIYSNPMETSFKQRCLEDW 477

Query: 482 KKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELK 541
           K YHRKLL+TL+NEG A LG+VSESDY+RVEERL+K+IKGP+Q+ LKPKAASKM+VSELK
Sbjct: 478 KMYHRKLLKTLRNEGLAALGEVSESDYIRVEERLRKIIKGPDQNALKPKAASKMIVSELK 537

Query: 542 EELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKL 601
           EEL+AQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEE+DELISRIKL
Sbjct: 538 EELEAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEELDELISRIKL 597

Query: 602 EEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDD-DVTDVEYVAKDEEADEEEEVE 660
           +EGNTEFWKRRFLGE L     K ++ + SEL DVLDD D+ +      +++  +EEE E
Sbjct: 598 QEGNTEFWKRRFLGEDLTVGRGKPMDKENSELPDVLDDADIGEDTAKEVEDDEADEEEEE 657

Query: 661 QAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRM-VEDDDDED 719
               ESQ  DRVK+K VEA KPLQMIGVQLLKDSDQTT  +++S ++ SR  +ED DD+D
Sbjct: 658 VEPTESQVADRVKDKEVEAAKPLQMIGVQLLKDSDQTTPATRKSRRKLSRASMEDSDDDD 717

Query: 720 WFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIM 779
           WFP D  EAFKEMR+RK+FDVSDMYTIAD WGWTWE+E+ N+PP+ W+QEWEVELAI++M
Sbjct: 718 WFPLDIHEAFKEMRERKIFDVSDMYTIADVWGWTWEKELKNKPPRSWTQEWEVELAIKVM 777

Query: 780 LKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDL 839
           LKVIELGGTPTIGDCA+I+RAAIRAPLPSAFLK+LQ TH LGYVFGSPLY+E+I LCLDL
Sbjct: 778 LKVIELGGTPTIGDCAMILRAAIRAPLPSAFLKVLQTTHKLGYVFGSPLYNEVIILCLDL 837

Query: 840 GELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGETSVDDASS 883
           GELDAA+AIVADMET+GIAVPD+TLDRVI++RQ  +T+  D +S
Sbjct: 838 GELDAAIAIVADMETSGIAVPDETLDRVISARQMIDTAATDDTS 881

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185070|ref|NP_187076.2| plastid transcriptionally active 3 [Arabidopsis thaliana] gi|332640537|gb|AEE74058.1| plastid transcriptionally active 3 [Arabidopsis thaliana]

 Score = 1297 bits (3357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/898 (74%), Positives = 760/898 (84%), Gaps = 29/898 (3%)

Query: 3   LFLRTPFPF--ISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQ--KHGDSLLSTNG 58
           LFL  PFP   I P+  +   G+  IR ++S+PEKK RR+++Q+R    ++ DSL   +G
Sbjct: 4   LFLNPPFPSNSIHPI-PRRAAGISSIRCSISAPEKKPRRRRKQKRGDGAENDDSLSFGSG 62

Query: 59  SVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG 118
             VSA E+ LRL FM+ELM+ ARNRD   V++VIYDMIAAGLSPGPRSFHGLVVA+ LNG
Sbjct: 63  EAVSALERSLRLTFMDELMERARNRDTSGVSEVIYDMIAAGLSPGPRSFHGLVVAHALNG 122

Query: 119 DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLI 178
           D +GAMHSL++EL AG RPL ET+IAL RL GSKG AT+GLEILAAMEK+ YDIRQAWLI
Sbjct: 123 DEQGAMHSLRKELGAGQRPLPETMIALVRLSGSKGNATRGLEILAAMEKLKYDIRQAWLI 182

Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
           LVEEL+R  +LEDANKVFL+GA+GG+RATD++YDLMI EDCKAGDHSNAL+I+YEMEAAG
Sbjct: 183 LVEELMRINHLEDANKVFLKGARGGMRATDQLYDLMIEEDCKAGDHSNALDISYEMEAAG 242

Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
           RMATTFHFN LLS QATCGIPEVA+ATFENMEYGE +MKPDTETYN VIQAYTRAESYDR
Sbjct: 243 RMATTFHFNCLLSVQATCGIPEVAYATFENMEYGEVFMKPDTETYNWVIQAYTRAESYDR 302

Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358
           VQDVAELLGMMVEDHKR+QPNVKTYALLVECFTKYC V EAIRHFRAL+N+EGGT +LHN
Sbjct: 303 VQDVAELLGMMVEDHKRVQPNVKTYALLVECFTKYCVVKEAIRHFRALKNFEGGTVILHN 362

Query: 359 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPL 418
            GNF DPLSLYLRALCREGRI+EL++AL+AM KDNQP+PPRAMI+SRKYRTLVSSWIEPL
Sbjct: 363 AGNFEDPLSLYLRALCREGRIVELIDALDAMRKDNQPIPPRAMIMSRKYRTLVSSWIEPL 422

Query: 419 QEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCL 478
           QEEAELGYEIDY+ARYI EGGLTGERKRWVPRRGKTPLDPDA GFIYSNP+ETSFKQRCL
Sbjct: 423 QEEAELGYEIDYLARYIEEGGLTGERKRWVPRRGKTPLDPDASGFIYSNPIETSFKQRCL 482

Query: 479 EDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVS 538
           ED K +HRKLLRTLQ+EG  VLGD SESDY+RV ERL+ +IKGP  ++LKPKAASKMVVS
Sbjct: 483 EDWKVHHRKLLRTLQSEGLPVLGDASESDYMRVVERLRNIIKGPALNLLKPKAASKMVVS 542

Query: 539 ELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISR 598
           ELKEEL+AQGLP DGTRNVLYQRVQKARRIN+SRGRPLWVPP+EEEEEEVDEEVD+LI R
Sbjct: 543 ELKEELEAQGLPIDGTRNVLYQRVQKARRINKSRGRPLWVPPIEEEEEEVDEEVDDLICR 602

Query: 599 IKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAK--------- 649
           IKL EG+TEFWKRRFLGEGL    + +VE  E+  S V  +    +E ++K         
Sbjct: 603 IKLHEGDTEFWKRRFLGEGL---IETSVESKETTESVVTGESEKAIEDISKEADNEEDDD 659

Query: 650 ----------DEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTT 699
                     DE  +EE  V + E  ++  D VK K  +AKK LQMIGVQLLK+SD+   
Sbjct: 660 EEEQEGDEDDDENEEEEVVVPETENRAEGEDLVKNKAADAKKHLQMIGVQLLKESDEANR 719

Query: 700 TSKRSMKRSSRM-VEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREI 758
           T KR  KR+SRM +EDD DEDWFPE+PFEAFKEMR+RKVFDV+DMYTIAD WGWTWE++ 
Sbjct: 720 TKKRG-KRASRMTLEDDADEDWFPEEPFEAFKEMRERKVFDVADMYTIADVWGWTWEKDF 778

Query: 759 TNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTH 818
            N+ P+KWSQEWEVELAI +M KVIELGG PTIGDCAVI+RAA+RAP+PSAFLKILQ TH
Sbjct: 779 KNKTPRKWSQEWEVELAIVLMTKVIELGGIPTIGDCAVILRAALRAPMPSAFLKILQTTH 838

Query: 819 SLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGET 876
           SLGY FGSPLYDEII+LCLDLGELDAA+AIVADMETTGI VPDQTLD+VI++RQ+ E+
Sbjct: 839 SLGYSFGSPLYDEIITLCLDLGELDAAIAIVADMETTGITVPDQTLDKVISARQSNES 896

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533668|ref|XP_003535382.1| PREDICTED: uncharacterized protein LOC100802355 [Glycine max]

 Score = 1291 bits (3340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/875 (76%), Positives = 759/875 (86%), Gaps = 30/875 (3%)

Query: 9   FPFISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGL 68
           FPF    L++     V +R+A+S+P+K+ R+KKQ +  +              SA E GL
Sbjct: 17  FPF---KLNRFSPRAVTVRAAVSAPDKRGRKKKQSKDDE--------------SAVENGL 59

Query: 69  RLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK 128
           R  FMEELM  ARNRD+  V++V+YDMIAAGLSPGPRSFHGLVV++ LNGD E AM SL+
Sbjct: 60  RFSFMEELMDRARNRDSNGVSEVMYDMIAAGLSPGPRSFHGLVVSHALNGDEEAAMESLR 119

Query: 129 RELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKY 188
           REL+AG+RP+HET +AL RLFGSKG AT+GLEILAAMEK+NYDIRQAWLIL+EELVRN +
Sbjct: 120 RELAAGLRPVHETFLALIRLFGSKGRATRGLEILAAMEKLNYDIRQAWLILIEELVRNMH 179

Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
           LEDAN+VFL+GAKGGL+ATDE+YDL+I EDCK GDHSNAL+IAYEMEAAGRMATTFHFN 
Sbjct: 180 LEDANEVFLKGAKGGLKATDEVYDLLIQEDCKVGDHSNALDIAYEMEAAGRMATTFHFNC 239

Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
           LLS QATCGIPE+AFATFENMEYGEDYMKPDTETYN VIQAYTRAESYDRVQDVAELLGM
Sbjct: 240 LLSVQATCGIPEIAFATFENMEYGEDYMKPDTETYNWVIQAYTRAESYDRVQDVAELLGM 299

Query: 309 MVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 368
           MVEDHKR+QPN KT+ALLVECFTKYC V EAIRHFRAL+N+EGG +VLHNEGN GDPLSL
Sbjct: 300 MVEDHKRIQPNAKTHALLVECFTKYCVVREAIRHFRALKNFEGGIEVLHNEGNHGDPLSL 359

Query: 369 YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEI 428
           YLRALCREGRI+E+LEALEAMAKDNQP+P RAMILSRKYRTLVSSWIEPLQEEAE+GYEI
Sbjct: 360 YLRALCREGRIVEMLEALEAMAKDNQPIPSRAMILSRKYRTLVSSWIEPLQEEAEIGYEI 419

Query: 429 DYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKL 488
           DYI+RYI EGGLTGERKRWVPRRGKTPLDPDA GFIYSNPMETSFKQRC+E+ K +++KL
Sbjct: 420 DYISRYIDEGGLTGERKRWVPRRGKTPLDPDAHGFIYSNPMETSFKQRCMEELKLHNKKL 479

Query: 489 LRTLQNEGPAVLG-DVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQ 547
           L+TLQNEG A LG DVSE DY+RV+ERLKKL+KGPEQ+VLKPKAASKM+VSELKEELDAQ
Sbjct: 480 LKTLQNEGLAALGDDVSEFDYIRVQERLKKLMKGPEQNVLKPKAASKMLVSELKEELDAQ 539

Query: 548 GLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTE 607
           GLP DGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEE+D LISRIKLEEGNTE
Sbjct: 540 GLPIDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEELDALISRIKLEEGNTE 599

Query: 608 FWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAK---------DEEADEEEE 658
           FWKRRFLGEGLNG  +   +  +S++ +VL DDV  +E  AK         +EE  E+ E
Sbjct: 600 FWKRRFLGEGLNGDQEMPTDAVQSDVPEVL-DDVDAIEDAAKEVEDDEADDEEEEAEQAE 658

Query: 659 VEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRM-VEDDDD 717
            E    E+QDV+R+KEK VEAK+PLQMIGVQLLKD DQ T TSK+  KRS R+ VEDDDD
Sbjct: 659 EEVEPAENQDVNRIKEKEVEAKRPLQMIGVQLLKDIDQPTATSKK-FKRSRRVQVEDDDD 717

Query: 718 EDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQ 777
           +DW P + FEAFKEMRKRK+FDVSDMYT+ADAWGWTWERE+ N+PP++WSQE EVELAI+
Sbjct: 718 DDWLPLNLFEAFKEMRKRKIFDVSDMYTLADAWGWTWERELKNKPPRRWSQEREVELAIK 777

Query: 778 IMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCL 837
           +M KVIELGG PTIGDCA+I+RAAIRAPLPSAFL ILQ TH+LG+ FGSPLYDE ISLC+
Sbjct: 778 VMHKVIELGGRPTIGDCAMILRAAIRAPLPSAFLTILQTTHALGFKFGSPLYDETISLCV 837

Query: 838 DLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQ 872
           DLGELDAAVA+VAD+ETTGI+V D TLDRVI+++Q
Sbjct: 838 DLGELDAAVAVVADLETTGISVSDHTLDRVISAKQ 872

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574857|ref|XP_003555560.1| PREDICTED: uncharacterized protein LOC100807191 [Glycine max]

 Score = 1290 bits (3337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 674/874 (77%), Positives = 755/874 (86%), Gaps = 28/874 (3%)

Query: 9   FPFISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGL 68
           FPF    L++     V +R+A+SSP+K+ R+KKQ +                 SA E GL
Sbjct: 17  FPF---KLNRFSPRTVTVRAAVSSPDKRGRKKKQAKDDD--------------SAVENGL 59

Query: 69  RLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK 128
           R  FMEELM  ARNRD+  V++V+YDMIAAGLSPGPRSFHGLVV++ LNGD E AM SL+
Sbjct: 60  RFSFMEELMDRARNRDSNGVSEVMYDMIAAGLSPGPRSFHGLVVSHALNGDEEAAMESLR 119

Query: 129 RELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKY 188
           REL+AG+RP+HET +AL RLFGSKG AT+GLEILAAMEK+NYDIRQAWLIL+EELV NK+
Sbjct: 120 RELAAGLRPVHETFLALIRLFGSKGRATRGLEILAAMEKLNYDIRQAWLILIEELVWNKH 179

Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
           LEDAN+VFL+GAKGGL+ATDE+YDL+I EDCKAGDHSNAL+IAYEMEAAGRMATTFHFN 
Sbjct: 180 LEDANEVFLKGAKGGLKATDEVYDLLIEEDCKAGDHSNALDIAYEMEAAGRMATTFHFNC 239

Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
           LLS QATCGIPE+AFATFENMEYGEDYMKPDTETYN VIQAYTRAESYDRVQDVAELLGM
Sbjct: 240 LLSVQATCGIPEIAFATFENMEYGEDYMKPDTETYNWVIQAYTRAESYDRVQDVAELLGM 299

Query: 309 MVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 368
           MVEDHKR+QPN KT+ALLVECFTKYC V EAIRHFRAL+N+EGG KVLHNEGN GDPLSL
Sbjct: 300 MVEDHKRIQPNAKTHALLVECFTKYCVVREAIRHFRALKNFEGGIKVLHNEGNHGDPLSL 359

Query: 369 YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEI 428
           YLRALCREGRI+E+LEALEAMAKDNQP+P RAMILSRKYRTLVSSWIEPLQEEAELGYEI
Sbjct: 360 YLRALCREGRIVEMLEALEAMAKDNQPIPSRAMILSRKYRTLVSSWIEPLQEEAELGYEI 419

Query: 429 DYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKL 488
           DYI+RYI EGGLTGERKRWVPRRGKTPLDPDA GFIYSNPMETSFKQRCLE+ K +++KL
Sbjct: 420 DYISRYIDEGGLTGERKRWVPRRGKTPLDPDAHGFIYSNPMETSFKQRCLEELKLHNKKL 479

Query: 489 LRTLQNEGPAVLGD-VSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQ 547
           L+TLQNEG A LGD VSESDY+RV+ERLKKLIKGPEQ+VLKPKAASKM+VSELKEELDAQ
Sbjct: 480 LKTLQNEGLAALGDGVSESDYIRVQERLKKLIKGPEQNVLKPKAASKMLVSELKEELDAQ 539

Query: 548 GLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTE 607
           GLP DG RNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEE+D LIS IKLEEGNTE
Sbjct: 540 GLPIDGNRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEELDALISHIKLEEGNTE 599

Query: 608 FWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAK---------DEEADEEEE 658
           FWKRRFLGEGLNG  +   +  ESE+ +VL DDV  +E  AK         DEE  E+ E
Sbjct: 600 FWKRRFLGEGLNGDQEMPTDAAESEVPEVL-DDVDAIEDAAKEVEDDEADDDEEEAEQAE 658

Query: 659 VEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDE 718
            E    E+QDV+R+KEK VEAK+PLQMIGVQLLKD DQ T TSK+  +     VEDDDD+
Sbjct: 659 EEVEPAENQDVNRIKEKEVEAKRPLQMIGVQLLKDIDQPTATSKKFKRSRKVQVEDDDDD 718

Query: 719 DWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQI 778
           DW P D FEAF+EMRKRK+FDVSDMYT+ADAWGWTWERE+  +PP++WSQEWEVELAI++
Sbjct: 719 DWLPLDLFEAFEEMRKRKIFDVSDMYTLADAWGWTWERELKKKPPRRWSQEWEVELAIKV 778

Query: 779 MLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLD 838
           M KVIELGG PTIGDCA+I+RAAIRAPLPSAFL ILQ THSLG+ FGSPLYDEIISLC+D
Sbjct: 779 MQKVIELGGRPTIGDCAMILRAAIRAPLPSAFLTILQTTHSLGFKFGSPLYDEIISLCVD 838

Query: 839 LGELDAAVAIVADMETTGIAVPDQTLDRVITSRQ 872
           LGELDAAVA+VAD+ETTGI+V D TLDRVI+++Q
Sbjct: 839 LGELDAAVAVVADLETTGISVSDLTLDRVISAKQ 872

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6721160|gb|AAF26788.1|AC016829_12 hypothetical protein [Arabidopsis thaliana]

 Score = 1287 bits (3331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/901 (73%), Positives = 760/901 (84%), Gaps = 32/901 (3%)

Query: 3   LFLRTPFPF--ISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQ--KHGDSLLSTNG 58
           LFL  PFP   I P+  +   G+  IR ++S+PEKK RR+++Q+R    ++ DSL   +G
Sbjct: 4   LFLNPPFPSNSIHPI-PRRAAGISSIRCSISAPEKKPRRRRKQKRGDGAENDDSLSFGSG 62

Query: 59  SVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG 118
             VSA E+ LRL FM+ELM+ ARNRD   V++VIYDMIAAGLSPGPRSFHGLVVA+ LNG
Sbjct: 63  EAVSALERSLRLTFMDELMERARNRDTSGVSEVIYDMIAAGLSPGPRSFHGLVVAHALNG 122

Query: 119 DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLI 178
           D +GAMHSL++EL AG RPL ET+IAL RL GSKG AT+GLEILAAMEK+ YDIRQAWLI
Sbjct: 123 DEQGAMHSLRKELGAGQRPLPETMIALVRLSGSKGNATRGLEILAAMEKLKYDIRQAWLI 182

Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
           LVEEL+R  +LEDANKVFL+GA+GG+RATD++YDLMI EDCKAGDHSNAL+I+YEMEAAG
Sbjct: 183 LVEELMRINHLEDANKVFLKGARGGMRATDQLYDLMIEEDCKAGDHSNALDISYEMEAAG 242

Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED-YMKPDTETYNCVIQAYTRAESYD 297
           RMATTFHFN LLS QATCGIPEVA+ATFENMEYGE  +MKPDTETYN VIQAYTRAESYD
Sbjct: 243 RMATTFHFNCLLSVQATCGIPEVAYATFENMEYGEGLFMKPDTETYNWVIQAYTRAESYD 302

Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
           RVQDVAELLGMMVEDHKR+QPNVKTYALLVECFTKYC V EAIRHFRAL+N+EGGT +LH
Sbjct: 303 RVQDVAELLGMMVEDHKRVQPNVKTYALLVECFTKYCVVKEAIRHFRALKNFEGGTVILH 362

Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEP 417
           N GNF DPLSLYLRALCREGRI+EL++AL+AM KDNQP+PPRAMI+SRKYRTLVSSWIEP
Sbjct: 363 NAGNFEDPLSLYLRALCREGRIVELIDALDAMRKDNQPIPPRAMIMSRKYRTLVSSWIEP 422

Query: 418 LQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRC 477
           LQEEAELGYEIDY+ARYI EGGLTGERKRWVPRRGKTPLDPDA GFIYSNP+ETSFKQRC
Sbjct: 423 LQEEAELGYEIDYLARYIEEGGLTGERKRWVPRRGKTPLDPDASGFIYSNPIETSFKQRC 482

Query: 478 LEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVV 537
           LED K +HRKLLRTLQ+EG  VLGD SESDY+RV ERL+ +IKGP  ++LKPKAASKMVV
Sbjct: 483 LEDWKVHHRKLLRTLQSEGLPVLGDASESDYMRVVERLRNIIKGPALNLLKPKAASKMVV 542

Query: 538 SELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELIS 597
           SELKEEL+AQGLP DGTRNVLYQRVQKARRIN+SRGRPLWVPP+EEEEEEVDEEVD+LI 
Sbjct: 543 SELKEELEAQGLPIDGTRNVLYQRVQKARRINKSRGRPLWVPPIEEEEEEVDEEVDDLIC 602

Query: 598 RIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAK-------- 649
           RIKL EG+TEFWKRRFLGEGL    + +VE  E+  S V  +    +E ++K        
Sbjct: 603 RIKLHEGDTEFWKRRFLGEGL---IETSVESKETTESVVTGESEKAIEDISKEADNEEDD 659

Query: 650 -----------DEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTT 698
                      DE  +EE  V + E  ++  D VK K  +AKK LQMIGVQLLK+SD+  
Sbjct: 660 DEEEQEGDEDDDENEEEEVVVPETENRAEGEDLVKNKAADAKKHLQMIGVQLLKESDEAN 719

Query: 699 TTSKRSMKRSSRM-VEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWERE 757
            T KR  KR+SRM +EDD DEDWFPE+PFEAFKEMR+RKVFDV+DMYTIAD WGWTWE++
Sbjct: 720 RTKKRG-KRASRMTLEDDADEDWFPEEPFEAFKEMRERKVFDVADMYTIADVWGWTWEKD 778

Query: 758 ITNRPPQKWSQEWEVELAIQIMLK--VIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQ 815
             N+ P+KWSQEWEVELAI +M K  VIELGG PTIGDCAVI+RAA+RAP+PSAFLKILQ
Sbjct: 779 FKNKTPRKWSQEWEVELAIVLMTKAGVIELGGIPTIGDCAVILRAALRAPMPSAFLKILQ 838

Query: 816 KTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGE 875
            THSLGY FGSPLYDEII+LCLDLGELDAA+AIVADMETTGI VPDQTLD+VI++RQ+ E
Sbjct: 839 TTHSLGYSFGSPLYDEIITLCLDLGELDAAIAIVADMETTGITVPDQTLDKVISARQSNE 898

Query: 876 T 876
           +
Sbjct: 899 S 899

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144652|ref|XP_002325363.1| predicted protein [Populus trichocarpa] gi|222862238|gb|EEE99744.1| predicted protein [Populus trichocarpa]

 Score = 1287 bits (3331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 674/891 (75%), Positives = 764/891 (85%), Gaps = 17/891 (1%)

Query: 3   LFLRTPFPFISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVS 62
           L L+TP PF       S+ GVV   ++ S+   K  R+K+  +Q+    S LS    VVS
Sbjct: 4   LSLQTPLPFKPRHSLPSKNGVV--YASTSATAPKKSRRKKPPKQKNDNGSPLSV---VVS 58

Query: 63  AAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEG 122
           A E+ LR  FMEELM  ARNRD+  V+DVIYDMIAAGLSPGPRSFHGL+VA+TLNGDHEG
Sbjct: 59  AEEKNLRFAFMEELMHRARNRDSNGVSDVIYDMIAAGLSPGPRSFHGLIVAHTLNGDHEG 118

Query: 123 AMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEE 182
           AM SL+RELSAG RPLHET IAL RLFGSKG  T+GLE+LAAMEK+NYDIR+AW++LVEE
Sbjct: 119 AMQSLRRELSAGHRPLHETCIALIRLFGSKGFGTRGLELLAAMEKLNYDIRRAWILLVEE 178

Query: 183 LVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMAT 242
           LV+ +++EDAN+VFL+GA GGLRATDE+YDLMI EDCK GDHSNAL+IAY ME AGRMAT
Sbjct: 179 LVKGRFMEDANRVFLKGANGGLRATDELYDLMIEEDCKVGDHSNALDIAYAMEEAGRMAT 238

Query: 243 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV 302
           TFHFN LLS QATCGIPE++FATFENMEYGEDYMKPDTE+YN VIQAYTRAESYDRVQDV
Sbjct: 239 TFHFNCLLSVQATCGIPEISFATFENMEYGEDYMKPDTESYNWVIQAYTRAESYDRVQDV 298

Query: 303 AELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNF 362
           AELLGMMVEDHKR+QPNVKTYALLVECF+KYC V EAIRHFRAL+ +EGGTK LHNEG F
Sbjct: 299 AELLGMMVEDHKRIQPNVKTYALLVECFSKYCVVREAIRHFRALRKFEGGTKALHNEGKF 358

Query: 363 GDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEA 422
           GDPLSLYLRALCREGRI++LLEALEAMA+DNQP+PPRAMILSRKYRTLVSSWIEPLQEEA
Sbjct: 359 GDPLSLYLRALCREGRIVDLLEALEAMAEDNQPIPPRAMILSRKYRTLVSSWIEPLQEEA 418

Query: 423 ELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGK 482
           ELGYEIDY+ARY++EGGLTGERKRWVPRRGKTPLDPD  GFIYSNPMETS KQRCLED K
Sbjct: 419 ELGYEIDYVARYVAEGGLTGERKRWVPRRGKTPLDPDCDGFIYSNPMETSLKQRCLEDWK 478

Query: 483 KYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKE 542
            +HRKLL+ L+NEG A LGD SESDY+RVEERL+K+I+GP+++VLKPKAASKM+VSELK+
Sbjct: 479 AHHRKLLKMLRNEGLAALGDASESDYLRVEERLRKIIRGPDRNVLKPKAASKMIVSELKD 538

Query: 543 ELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLE 602
           EL+AQGLP DGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRI+L 
Sbjct: 539 ELEAQGLPIDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIQLH 598

Query: 603 EGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDV---------EYVAKDEEA 653
           EG+TEFWKRRFLGEG NG H K V+M+ SEL D LD+D  D          E   ++ + 
Sbjct: 599 EGDTEFWKRRFLGEGFNGNHVKPVDMETSELPDELDEDEDDDDDDVEDVAKEVEDEEADE 658

Query: 654 DEEEEVEQAEPESQDVDR-VKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMV 712
           + E EVE  + ESQD +R VK K  EAKKPLQMIGVQLLKDSDQTT  SK+S +R++R+ 
Sbjct: 659 EGEVEVEVEQTESQDAERIVKAKEAEAKKPLQMIGVQLLKDSDQTTRMSKKSRRRAARLA 718

Query: 713 EDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEV 772
           + DDD+DWFPED  EAFKEMR RKVFDV DMY IADAWGWTWEREI  RP Q+WSQEWEV
Sbjct: 719 D-DDDDDWFPEDILEAFKEMRNRKVFDVEDMYLIADAWGWTWEREIKKRPLQRWSQEWEV 777

Query: 773 ELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEI 832
           ELAIQ+MLK  +LGGTPTIGDCA+I+RAAIRAP+PSAFLKILQ THSLGY FGS LYDEI
Sbjct: 778 ELAIQLMLKA-KLGGTPTIGDCAMILRAAIRAPMPSAFLKILQTTHSLGYQFGSSLYDEI 836

Query: 833 ISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGETSVDDASS 883
           ISLC+DLGELDAA+AIVAD+ET GIAVPDQTLDRVI+++Q  E++ ++  S
Sbjct: 837 ISLCVDLGELDAAIAIVADLETAGIAVPDQTLDRVISAKQAPESAAEETLS 887

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833108|ref|XP_002884436.1| hypothetical protein ARALYDRAFT_477686 [Arabidopsis lyrata subsp. lyrata] gi|297330276|gb|EFH60695.1| hypothetical protein ARALYDRAFT_477686 [Arabidopsis lyrata subsp. lyrata]

 Score = 1286 bits (3328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/901 (73%), Positives = 756/901 (83%), Gaps = 31/901 (3%)

Query: 3   LFLRTPFPFIS-PVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQ-KHGDSLLS-TNGS 59
           LFL  PFP  S   + +   G+  IR ++S+PEKK RR+++Q+R      DS LS  +G 
Sbjct: 4   LFLNPPFPSNSIHTIPRRAAGLSSIRCSISAPEKKPRRRRKQKRGDGAENDSSLSFGSGD 63

Query: 60  VVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGD 119
            VSA E+ LRL FM+ELM+ ARNRD   V++VIYDMIAAGLSPGPRSFHGLVVA+ LNGD
Sbjct: 64  AVSALERSLRLTFMDELMERARNRDTSGVSEVIYDMIAAGLSPGPRSFHGLVVAHALNGD 123

Query: 120 HEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLIL 179
             GAMHSL++EL AG RPL ET+IAL RL GSKG AT+GLEILAAMEK+NYDIRQAWLIL
Sbjct: 124 EHGAMHSLRKELGAGQRPLPETMIALVRLSGSKGNATRGLEILAAMEKLNYDIRQAWLIL 183

Query: 180 VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGR 239
           VEEL+R  +LEDANKVFL+GA+GG+RAT+ +YDLMI EDCKAGDHSNALEI+YEMEAAGR
Sbjct: 184 VEELMRINHLEDANKVFLKGARGGMRATNHLYDLMIEEDCKAGDHSNALEISYEMEAAGR 243

Query: 240 MATTFHFNHLLSCQATCGIPEVAFATFENMEYGED-YMKPDTETYNCVIQAYTRAESYDR 298
           MATTFHFN LLS QATCGIPEVA+ATFENMEYGE  +MKPDTETYN VIQAYTRAESYDR
Sbjct: 244 MATTFHFNCLLSVQATCGIPEVAYATFENMEYGEGLFMKPDTETYNWVIQAYTRAESYDR 303

Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358
           VQDVAELLGMMVEDHKR+QPNVKTYALLVECFTKYC V EAIRHFRAL+N+EGGT +LHN
Sbjct: 304 VQDVAELLGMMVEDHKRVQPNVKTYALLVECFTKYCVVKEAIRHFRALKNFEGGTTILHN 363

Query: 359 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPL 418
            G F DPLSLYLRALCREGRI+EL++AL+AM KD+QP+PPRAMI+SRKYRTLVSSWIEPL
Sbjct: 364 AGKFEDPLSLYLRALCREGRIVELIDALDAMRKDSQPIPPRAMIMSRKYRTLVSSWIEPL 423

Query: 419 QEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCL 478
           QEEAELGYEIDY+ARYI EGGLTGERKRWVPRRGKTPLDPDA GFIYSNP+ETSFKQRCL
Sbjct: 424 QEEAELGYEIDYVARYIEEGGLTGERKRWVPRRGKTPLDPDASGFIYSNPIETSFKQRCL 483

Query: 479 EDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVS 538
           ED K +HRKLLRTLQ+EG  VLGD SESDY+RV ERL+ +IKGP Q++LKPKAASKMVVS
Sbjct: 484 EDWKIHHRKLLRTLQSEGLPVLGDASESDYMRVMERLRNIIKGPAQNLLKPKAASKMVVS 543

Query: 539 ELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISR 598
           ELKEEL+AQGLP DGTRNVLYQRVQKARRIN+SRGRPLWVPP+EEEEEEVDEEVD+LI R
Sbjct: 544 ELKEELEAQGLPIDGTRNVLYQRVQKARRINKSRGRPLWVPPIEEEEEEVDEEVDDLICR 603

Query: 599 IKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAK--------- 649
           IKL EG+TEFWKRRFLGEGL    + +VE  E+  S V  +    +E ++K         
Sbjct: 604 IKLHEGDTEFWKRRFLGEGL---IETSVESKETTESVVTGESEKAIEDISKEADNDEDDD 660

Query: 650 -----------DEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTT 698
                      + E +EE  V + E  ++  + VK K  +AKK LQMIGVQLLK+SD+  
Sbjct: 661 EEEQEGDDDDDETEEEEEVVVAETENRAEGEELVKNKAADAKKHLQMIGVQLLKESDEAN 720

Query: 699 TTSKRSMKRSSRM-VEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWERE 757
            T KR  KR+SRM +EDD DEDWFPEDPFEAFKEMR+RKVFDVSDMYTIAD WGWTWE++
Sbjct: 721 RTKKRG-KRASRMTLEDDADEDWFPEDPFEAFKEMRERKVFDVSDMYTIADVWGWTWEKD 779

Query: 758 ITNRPPQKWSQEWEVELAIQIMLK--VIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQ 815
             NR P+KWSQEWEVELAI +M K  VIELGG PTIGDCAVI+RAA+RAP+PSAFLKILQ
Sbjct: 780 FKNRTPRKWSQEWEVELAIVLMTKARVIELGGIPTIGDCAVILRAALRAPMPSAFLKILQ 839

Query: 816 KTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGE 875
            THSLGY FGSPLYDEII+LCLD+GELDAA+AIVADMETTGI VPDQTLD+VI++RQ+ E
Sbjct: 840 TTHSLGYSFGSPLYDEIITLCLDIGELDAAIAIVADMETTGITVPDQTLDKVISARQSNE 899

Query: 876 T 876
            
Sbjct: 900 N 900

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441259|ref|XP_003590907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355479955|gb|AES61158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score = 1276 bits (3302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 654/914 (71%), Positives = 741/914 (81%), Gaps = 73/914 (7%)

Query: 25  PIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRD 84
           P+R+A+SSPEK+TR+KKQ     K  D+LL          E  LR  FMEELM  ARNRD
Sbjct: 25  PVRAALSSPEKRTRKKKQV----KDDDTLL----------ENSLRFSFMEELMNRARNRD 70

Query: 85  APRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIA 144
           +  V+ V+YDMIAAGLSPGPRSFHGLVV+Y LNG+ + AM SL+REL AG+RP+HET +A
Sbjct: 71  STGVSQVMYDMIAAGLSPGPRSFHGLVVSYALNGNEQAAMDSLRRELGAGLRPIHETFVA 130

Query: 145 LARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
           L RLFGSKG +T+GLEIL AME +NYDIR AW+IL+EELVRNK+LEDANKVFL+GAKGGL
Sbjct: 131 LVRLFGSKGHSTRGLEILGAMENLNYDIRHAWIILIEELVRNKHLEDANKVFLKGAKGGL 190

Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
           RATDE+YDL+I EDCKAGDHSNALEI+YEMEAAGRMATTFHFN LLS QATCGIPE+AF 
Sbjct: 191 RATDELYDLLIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCLLSVQATCGIPEIAFT 250

Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
           TFENMEYGEDYMKPDTETYN VIQAYTRA+SYDRVQDVAELLGMMVEDHKR+QPNVKT+A
Sbjct: 251 TFENMEYGEDYMKPDTETYNWVIQAYTRADSYDRVQDVAELLGMMVEDHKRVQPNVKTHA 310

Query: 325 LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLE 384
           LLVECFTKYC V EAIRHFRAL+N+EGGTK+LH +GN GDPLSLYLRALCREGRII++LE
Sbjct: 311 LLVECFTKYCVVREAIRHFRALKNFEGGTKILHMDGNHGDPLSLYLRALCREGRIIDMLE 370

Query: 385 ALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGER 444
           ALEAMA DNQ +PPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARY+ EGGLTGER
Sbjct: 371 ALEAMANDNQQIPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYVEEGGLTGER 430

Query: 445 KRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGD-V 503
           KRWVPR GKTPLDPDA GFIYSNPMETSFKQRCLE+ K YH+KLL+ L+ EG   LGD  
Sbjct: 431 KRWVPRSGKTPLDPDADGFIYSNPMETSFKQRCLEEKKVYHKKLLKKLRYEGIVALGDGA 490

Query: 504 SESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQ 563
           SESDYVRV E LKK+IKGPEQ+ LKPKAASKM+V+ELKEEL+AQGLP DGTRNVLYQRVQ
Sbjct: 491 SESDYVRVIEWLKKIIKGPEQNALKPKAASKMLVNELKEELEAQGLPIDGTRNVLYQRVQ 550

Query: 564 KARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHD 623
           KARRIN+SRGRPLWVPP+E EEEEVDEE++ LISRIKLEEGNTE+WKRRFLGEGLNG + 
Sbjct: 551 KARRINQSRGRPLWVPPIEVEEEEVDEELEALISRIKLEEGNTEYWKRRFLGEGLNGDNG 610

Query: 624 KAVEMDESELSDVLDDDVTDV-----------EYVAKDEEADEEEEVEQAEPESQDVDRV 672
            A++  ESE  DV   D  DV           E    +EE  E+ E E A+ E+QDV+R+
Sbjct: 611 NAMDEGESESPDV--QDYIDVVGDDAKEAEDDEADEDEEEEVEQIEEEIAQVENQDVERI 668

Query: 673 KEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSS--RMVEDDDDEDWFPEDPFEAFK 730
           KEK VE+KKPLQMIGVQLLKD ++ + T K+S +R S   MV+DD D+DWFP D FEAFK
Sbjct: 669 KEKEVESKKPLQMIGVQLLKDFNEPSATFKKSSRRRSRRNMVDDDADDDWFPLDIFEAFK 728

Query: 731 EMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLK--------- 781
           EMR R+VFDVSDMYT+ADAWGWTWE+E+ NRPP +WSQEWEV+LAI++M K         
Sbjct: 729 EMRNRRVFDVSDMYTLADAWGWTWEKELKNRPPHRWSQEWEVDLAIKVMQKATVANTPLD 788

Query: 782 ----------------------------------VIELGGTPTIGDCAVIIRAAIRAPLP 807
                                             VI+LGGTPTIGDCAVI+RAAI APLP
Sbjct: 789 KLNKKEIVRAVILSMCKELKVGYVVRIKYGDNAAVIQLGGTPTIGDCAVILRAAISAPLP 848

Query: 808 SAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRV 867
           SAFL ILQ TH LGY FG PLYDE+ISLCLDLGELDAAVA+VAD+ETTGI V DQTLDRV
Sbjct: 849 SAFLTILQTTHGLGYKFGRPLYDEVISLCLDLGELDAAVAVVADLETTGILVSDQTLDRV 908

Query: 868 ITSRQTGETSVDDA 881
           I+++Q  +   +D 
Sbjct: 909 ISAKQGIDNPSNDG 922

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357140590|ref|XP_003571848.1| PREDICTED: uncharacterized protein LOC100838913 [Brachypodium distachyon]

 Score = 1143 bits (2956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/826 (70%), Positives = 687/826 (83%), Gaps = 16/826 (1%)

Query: 59  SVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG 118
           S   A E+GLRL F+E+L++ AR  DA  V D IYDM+AAGLSPGPRSFHGLV A+ L+G
Sbjct: 61  SAAGAVEKGLRLAFLEQLVERARAADAAGVADTIYDMVAAGLSPGPRSFHGLVAAHALSG 120

Query: 119 DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLI 178
           D EGAM SL+RELS+GVRPLHET +AL R+F  KGL+T+ +EILAAME+  YDIR+AWLI
Sbjct: 121 DAEGAMQSLRRELSSGVRPLHETFVALVRVFAKKGLSTRAMEILAAMERYKYDIRKAWLI 180

Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
           LVEELVRN YLEDAN VFL+GAKGGL+ TDE+YDL+I EDCKAGDHSNAL +AY+MEAAG
Sbjct: 181 LVEELVRNHYLEDANTVFLKGAKGGLQGTDELYDLLIEEDCKAGDHSNALTVAYQMEAAG 240

Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYG-EDYMKPDTETYNCVIQAYTRAESYD 297
           RMATTFHFN LLS QATCGIPE+AF+T+ENMEYG EDYMKPDTE+YN VIQA+TRA ++D
Sbjct: 241 RMATTFHFNCLLSVQATCGIPEIAFSTYENMEYGGEDYMKPDTESYNWVIQAFTRASAHD 300

Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
           R  DVAELLGMMVED+KR+QPN +TYALLVECFTKYC V EAIRHFRAL+   GGT VL+
Sbjct: 301 RAPDVAELLGMMVEDYKRIQPNARTYALLVECFTKYCMVNEAIRHFRALRRIPGGTTVLY 360

Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEP 417
           NEGN GDPLSLYLR+LC +GR  ELL+ALEAMA DNQ + PRAMIL+RKYRTLVSSWIEP
Sbjct: 361 NEGNCGDPLSLYLRSLCLDGRADELLDALEAMADDNQTIAPRAMILNRKYRTLVSSWIEP 420

Query: 418 LQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRC 477
           LQEEA++G+EIDY+ARYI EGGLTGERKRWVPRRGKTPLDPD  GF YSNP+ETSFK RC
Sbjct: 421 LQEEADVGFEIDYVARYIEEGGLTGERKRWVPRRGKTPLDPDEFGFAYSNPIETSFKLRC 480

Query: 478 LEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVV 537
            E+ K YHR+LL TL+NEGP +LGDVSE D  RV ERLKKL+ GP+++V+KPKAASKMVV
Sbjct: 481 FEELKLYHRRLLITLRNEGPGILGDVSEDDVRRVVERLKKLVVGPKKNVVKPKAASKMVV 540

Query: 538 SELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELIS 597
           SELK EL+AQGLPTDG R VLYQRVQKARRINRSRG PLWVPPVE++EE   EE+DE+IS
Sbjct: 541 SELKIELEAQGLPTDGNRQVLYQRVQKARRINRSRGIPLWVPPVEDDEEVD-EELDEMIS 599

Query: 598 RIKLEEGNTEFWKRRFLGEGLNGR-HDKAVEMDESELSDVLDDDVTDVEYVAKDEEADE- 655
           RIKLE+GNTEFWKRRFLGE  N    + + E D     ++ DDD  D +  AK+ + DE 
Sbjct: 600 RIKLEDGNTEFWKRRFLGETRNHLCEEDSKEEDPDLDDELDDDDDDDDDDSAKEADEDEI 659

Query: 656 --EEEVEQAEPESQDVDRVKEKLVEAKKP---LQMIGVQLLKDSDQTTTTSKRSMKRSSR 710
             EE  E+ + ++ D D  K+K   AK P   LQMIGVQLLKD ++T+ ++K+  K    
Sbjct: 660 YDEEVAERTQNQAGD-DETKDK--PAKGPNQHLQMIGVQLLKDLEKTSVSTKKLKK---- 712

Query: 711 MVEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEW 770
           + E DDDEDWFPEDP EAFK MR+ ++FDVSDMYT ADAWGWTWEREI  + P+KWSQEW
Sbjct: 713 IPEIDDDEDWFPEDPIEAFKVMRETRMFDVSDMYTTADAWGWTWEREIKKKMPRKWSQEW 772

Query: 771 EVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYD 830
           EVELAI+IM KVI+LGGTPTIGDCA+I+RAA++AP+PS F+ ILQ TH+LG+ FGSPLYD
Sbjct: 773 EVELAIKIMNKVIQLGGTPTIGDCAIILRAAMKAPVPSTFMTILQTTHNLGHKFGSPLYD 832

Query: 831 EIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGET 876
           E+I LCLDL E+DAA+A+VA+MET GI V D+TLDRV++++Q+G +
Sbjct: 833 EVILLCLDLEEIDAAIAVVAEMETNGIKVLDETLDRVLSAKQSGNS 878

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	883
TAIR|locus:2166610	596	AT5G38730 "AT5G38730" [Arabido	0.268	0.397	0.244	9.1e-09
TAIR|locus:2024367	607	AT1G09680 "AT1G09680" [Arabido	0.269	0.392	0.244	1.2e-08
TAIR|locus:2175443	952	AT5G04810 [Arabidopsis thalian	0.345	0.320	0.208	1.5e-08
TAIR|locus:2195047	621	AT1G12620 [Arabidopsis thalian	0.280	0.399	0.230	1.6e-08
TAIR|locus:2157732	723	EMB1006 "embryo defective 1006	0.184	0.225	0.281	1.5e-07
TAIR|locus:2197424	664	EMB3103 "EMBRYO DEFECTIVE 3103	0.420	0.558	0.215	3.6e-07
TAIR|locus:2151281	819	AT5G02860 [Arabidopsis thalian	0.279	0.301	0.265	3.7e-07
TAIR|locus:2827701	874	AT2G17140 [Arabidopsis thalian	0.378	0.382	0.229	4.7e-07
TAIR|locus:2084978	602	AT3G04760 [Arabidopsis thalian	0.255	0.375	0.254	5.1e-07
TAIR|locus:2116772	1112	PGR3 "AT4G31850" [Arabidopsis	0.377	0.299	0.234	6.5e-07

TAIR|locus:2166610 AT5G38730 "AT5G38730" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
 Identities = 64/262 (24%), Positives = 120/262 (45%)

Query:   174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
             QA  +L+  LV+ +  +   K+F +  K G+ A   +Y++++    K+GD   A ++  E
Sbjct:   169 QACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSE 228

Query:   234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
             ME  G     F +N L+S      +   A +  + ME     + P+  TYN  I  ++R 
Sbjct:   229 MEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRME--RSGVAPNIVTYNSFIHGFSRE 286

Query:   294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN--YEG 351
                 R+++   L   + +D   +  N  TY  L++ + +   + EA+R    +++  +  
Sbjct:   287 ---GRMREATRLFREIKDD---VTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSP 340

Query:   352 GTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA-KDNQP--VPPRAMILSR-KY 407
             G  V +N           LR LC +GRI E    L  M+ K  +P  +    +I +  K 
Sbjct:   341 GV-VTYNS---------ILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKI 390

Query:   408 RTLVSSWIEPLQEEAELGYEID 429
               +VS+ ++  ++  E G ++D
Sbjct:   391 EDMVSA-VKVKKKMIESGLKLD 411

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2024367 AT1G09680 "AT1G09680" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 60/245 (24%), Positives = 108/245 (44%)

Query:    70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
             +IF   +  H+RN +   + +    M++ GL P    ++ LV  +  NGD   A + +  
Sbjct:   346 VIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDG 405

Query:   130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKY 188
              +  G+RP   T   L   F   G     LEI   M++   ++ R  +  LV  + +   
Sbjct:   406 MIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGR 465

Query:   189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
             + DA +      + G++  D  Y +M+   CK GD     ++  EM++ G + +   +N 
Sbjct:   466 VIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNV 525

Query:   249 LLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTR-AESYDRVQDVAELL 306
             LL+     G  + A    + M   G   + PD  TYN +++ + R A S  R     E+ 
Sbjct:   526 LLNGLCKLGQMKNADMLLDAMLNIG---VVPDDITYNTLLEGHHRHANSSKRYIQKPEI- 581

Query:   307 GMMVE 311
             G++ +
Sbjct:   582 GIVAD 586

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175443 AT5G04810 [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
 Identities = 69/331 (20%), Positives = 133/331 (40%)

Query:    71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
             I+ + +  H +  +  R   ++ +M   G+      +H ++  YT+  D +  +   KR 
Sbjct:   416 IYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRL 475

Query:   131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKY 188
                G  P   T   L  L+   G  +K LE+   M  E + ++++  + +++   V+ K 
Sbjct:   476 KECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLK-TYSMMINGFVKLKD 534

Query:   189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
               +A  VF    K G++    +Y+ +I+  C  G+   A++   EM+      TT  F  
Sbjct:   535 WANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMP 594

Query:   249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE---L 305
             ++   A  G    +   F+ M        P   T+N +I         ++  ++ +   L
Sbjct:   595 IIHGYAKSGDMRRSLEVFDMMR--RCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTL 652

Query:   306 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEG-GTKVLHNEGNFGD 364
              G+   +H        TY  +++ +       +A  +F  LQN EG    +   E     
Sbjct:   653 AGVSANEH--------TYTKIMQGYASVGDTGKAFEYFTRLQN-EGLDVDIFTYEA---- 699

Query:   365 PLSLYLRALCREGRIIELLEALEAMAKDNQP 395
                  L+A C+ GR+   L   + M+  N P
Sbjct:   700 ----LLKACCKSGRMQSALAVTKEMSARNIP 726

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 60/260 (23%), Positives = 113/260 (43%)

Query:    90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
             +++  M+  G  P   + + LV    LNG    A+  + R +  G +P   T   + ++ 
Sbjct:   163 ELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVM 222

Query:   150 GSKGLATKGLEILAAME--KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
                G     +E+L  ME  KI  D  + + I+++ L ++  L++A  +F      G +A 
Sbjct:   223 CKSGQTALAMELLRKMEERKIKLDAVK-YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKAD 281

Query:   208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IPEVAFATF 266
               IY  +I   C AG   +  ++  +M           F+ L+ C    G + E      
Sbjct:   282 IIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHK 341

Query:   267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
             E ++ G   + PDT TY  +I  + +    D+      +L +MV   K   PN++T+ +L
Sbjct:   342 EMIQRG---ISPDTVTYTSLIDGFCKENQLDKAN---HMLDLMVS--KGCGPNIRTFNIL 393

Query:   327 VECFTKYCAVTEAIRHFRAL 346
             +  + K   + + +  FR +
Sbjct:   394 INGYCKANLIDDGLELFRKM 413

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157732 EMB1006 "embryo defective 1006" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 49/174 (28%), Positives = 83/174 (47%)

Query:   160 EILAAMEKIN-YDIRQAWLILVEELVR-NKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
             E+  AM+KIN Y       IL+  L +  +  ++  ++F + ++ G++ + +++  ++  
Sbjct:   294 EVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKS 353

Query:   218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
              C  G    AL I  EME  G  + T  +N L+         E     F  M   +  +K
Sbjct:   354 FCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMR--DKGLK 411

Query:   278 PDTETYNCVIQAYTRAESYDRVQ-DVAELLGMMVEDHKRLQPNVKTYALLVECF 330
             P   TYN ++ AY R     R+Q D+ E L   +ED   L+PNVK+Y  L+  +
Sbjct:   412 PSAATYNILMDAYAR-----RMQPDIVETLLREMED-LGLEPNVKSYTCLISAY 459

GO:0009507 "chloroplast" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2197424 EMB3103 "EMBRYO DEFECTIVE 3103" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 86/399 (21%), Positives = 166/399 (41%)

Query:    80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
             A N  +    + I  M   G SP    +  L+ +Y+  GD++ A   +    S G+ P  
Sbjct:   248 ASNGRSEEAENFIQQMKVEGHSPNIYHYSSLLNSYSWKGDYKKADELMTEMKSIGLVPNK 307

Query:   140 ETLIALARLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLR 198
               +  L +++   GL  +  E+L+ +E   Y +    + +L++ L +   LE+A  +F  
Sbjct:   308 VMMTTLLKVYIKGGLFDRSRELLSELESAGYAENEMPYCMLMDGLSKAGKLEEARSIF-D 366

Query:   199 GAKG-GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
               KG G+R+      +MI+  C++     A E++ + E           N +L      G
Sbjct:   367 DMKGKGVRSDGYANSIMISALCRSKRFKEAKELSRDSETTYEKCDLVMLNTMLCAYCRAG 426

Query:   258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
               E      + M+  E  + PD  T++ +I+ + + + +         L M  + H RL+
Sbjct:   427 EMESVMRMMKKMD--EQAVSPDYNTFHILIKYFIKEKLHLLAYQTT--LDMHSKGH-RLE 481

Query:   318 PNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT--KVLHNEGNFGDPLSLYLRALCR 375
               +   + L+    K  A  EA   +  L+ Y   T  K LH +      L + ++    
Sbjct:   482 EEL--CSSLIYHLGKIRAQAEAFSVYNMLR-YSKRTICKELHEK-----ILHILIQGNLL 533

Query:   376 EGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEA----ELGYEIDYI 431
             +   I + +  + +++       RA ++S     LV+  ++ L        ++ +EI  I
Sbjct:   534 KDAYIVVKDNAKMISQPTLKKFGRAFMISGNIN-LVNDVLKVLHGSGHKIDQVQFEIA-I 591

Query:   432 ARYISEGG---LTGERKRWVPRRGKTPLDPDAVGFIYSN 467
             +RYIS+     L  +  +W+P +G   +D      I  N
Sbjct:   592 SRYISQPDKKELLLQLLQWMPGQGYV-VDSSTRNLILKN 629

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 71/267 (26%), Positives = 114/267 (42%)

Query:    91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSA-GVRPLHETLIALARLF 149
             V+ +M+  G SP   +++ L+ AY  +G  + AM  LK +++  G +P   T   L   F
Sbjct:   336 VLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAME-LKNQMAEKGTKPDVFTYTTLLSGF 394

Query:   150 GSKGLATKGLEILAAME----KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
                G     + I   M     K N     A++ +     R K+ E   K+F      GL 
Sbjct:   395 ERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGN--RGKFTE-MMKIFDEINVCGLS 451

Query:   206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
                  ++ ++A   + G  S    +  EM+ AG +     FN L+S  + CG  E A   
Sbjct:   452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTV 511

Query:   266 FENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
             +  M + G   + PD  TYN V+ A  R   +++ + V   L  M ED  R +PN  TY 
Sbjct:   512 YRRMLDAG---VTPDLSTYNTVLAALARGGMWEQSEKV---LAEM-EDG-RCKPNELTYC 563

Query:   325 LLVECFTKYCAVTEAIRHFRALQNYEG 351
              L+  +     +   + H  A + Y G
Sbjct:   564 SLLHAYANGKEI--GLMHSLAEEVYSG 588

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2827701 AT2G17140 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
 Identities = 82/357 (22%), Positives = 144/357 (40%)

Query:    94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
             DM+  G++P   +F+ L+ A   +   + A          G +P   T   L R +   G
Sbjct:   137 DMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAG 196

Query:   154 LATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
             L  KGLE+L AME       +  +  +V    R    +D+ K+  +  + GL      ++
Sbjct:   197 LTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFN 256

Query:   213 LMIAEDCKAGDHSNALEIAYEMEAAGRMA----TTFHFNHLLSCQATCGIPEVAFATFEN 268
               I+  CK G   +A  I  +ME    +      +  +N +L      G+ E A   FE+
Sbjct:   257 SRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFES 316

Query:   269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
             +   +D      ++YN  +Q   R   +   + V   L  M +  K + P++ +Y +L++
Sbjct:   317 IRENDDLAS--LQSYNIWLQGLVRHGKFIEAETV---LKQMTD--KGIGPSIYSYNILMD 369

Query:   329 CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA 388
                K   +++A +    L    G   V  +   +G      L   C  G++      L+ 
Sbjct:   370 GLCKLGMLSDA-KTIVGLMKRNG---VCPDAVTYG----CLLHGYCSVGKVDAAKSLLQE 421

Query:   389 MAKDN-QPVPPRAMILSRKYRTL--VSSWIEPLQEEAELGYEIDYIARYISEGGLTG 442
             M ++N  P      IL      +  +S   E L++  E GY +D +   I   GL G
Sbjct:   422 MMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCG 478

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 5.1e-07, P = 5.1e-07
 Identities = 60/236 (25%), Positives = 99/236 (41%)

Query:    95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
             M +    P   ++  L+     +G  E AM+ LK     G+ P   +   L   F  +G 
Sbjct:   324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 383

Query:   155 ATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
                 +E L  M  +    DI     +L   L +N   + A ++F +  + G       Y+
Sbjct:   384 LDVAIEFLETMISDGCLPDIVNYNTVLAT-LCKNGKADQALEIFGKLGEVGCSPNSSSYN 442

Query:   213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
              M +    +GD   AL +  EM + G       +N ++SC    G+ + AF    +M   
Sbjct:   443 TMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSC 502

Query:   273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
             E +  P   TYN V+  + +A    R++D   +L  MV +  R  PN  TY +L+E
Sbjct:   503 EFH--PSVVTYNIVLLGFCKAH---RIEDAINVLESMVGNGCR--PNETTYTVLIE 551

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
 Identities = 84/358 (23%), Positives = 141/358 (39%)

Query:    81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
             ++R      +V   MI  G  P  +++  L+V      D +  M  LK   + G++P   
Sbjct:   200 KSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVY 259

Query:   141 TLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLR 198
             T     R+ G  G   +  EIL  M  E    D+   + +L++ L   + L+ A +VF +
Sbjct:   260 TFTICIRVLGRAGKINEAYEILKRMDDEGCGPDV-VTYTVLIDALCTARKLDCAKEVFEK 318

Query:   199 GAKGGLRATDEI-YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
               K G    D + Y  ++       D  +  +   EME  G +     F  L+      G
Sbjct:   319 -MKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAG 377

Query:   258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
                 AF T + M   +  + P+  TYN +I    R     R+ D  EL G M  +   ++
Sbjct:   378 NFGEAFDTLDVMR--DQGILPNLHTYNTLICGLLRVH---RLDDALELFGNM--ESLGVK 430

Query:   318 PNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 377
             P   TY + ++ + K      A+  F  ++       ++          SLY  +L + G
Sbjct:   431 PTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNA------SLY--SLAKAG 482

Query:   378 RIIELLEALEAMAKDNQPVPPRAM--ILSRKYRTL--VSSWIEPLQEEAELGYEIDYI 431
             R  E  +    + KD   VP      ++ + Y  +  +   I+ L E  E G E D I
Sbjct:   483 RDREAKQIFYGL-KDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVI 539

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	883
smart00513	35	smart00513, SAP, Putative DNA-binding (bihelical)	2e-06
pfam02037	35	pfam02037, SAP, SAP domain	5e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-06

>gnl|CDD|128789 smart00513, SAP, Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 533 SKMVVSELKEELDAQGLPTDGTRNVLYQRVQKA 565
           +K+ VSELK+EL  +GL T GT+  L  R+ +A
Sbjct: 2   AKLKVSELKDELKKRGLSTSGTKAELVDRLLEA 34

Length = 35

>gnl|CDD|202100 pfam02037, SAP, SAP domain

 Score = 43.5 bits (104), Expect = 5e-06
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 533 SKMVVSELKEELDAQGLPTDGTRNVLYQRVQKA 565
           SK+ V+ELKEEL  +GLPT G +  L +R+++ 
Sbjct: 2   SKLTVAELKEELKKRGLPTSGKKAELIERLKEY 34

The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins. Length = 35

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 43.9 bits (105), Expect = 5e-06
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
           PD  TYN +I  Y +     +V++  +L   M +  + ++PNV TY++L++   K
Sbjct: 1   PDVVTYNTLIDGYCKK---GKVEEALKLFNEMKK--RGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	883
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.89
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.88
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.81
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.78
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.58
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.56
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.55
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.5
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.49
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.48
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.47
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.45
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.3
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.26
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.23
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.23
PF13041	50	PPR_2: PPR repeat family	99.21
PF13041	50	PPR_2: PPR repeat family	99.21
PRK14574	822	hmsH outer membrane protein; Provisional	99.2
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.12
PRK14574	822	hmsH outer membrane protein; Provisional	99.07
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.06
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.06
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.02
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.99
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.99
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.96
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.96
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.93
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.91
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.86
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.85
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.84
PRK12370	553	invasion protein regulator; Provisional	98.75
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.73
KOG2076	895	consensus RNA polymerase III transcription factor	98.67
KOG2076	895	consensus RNA polymerase III transcription factor	98.65
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.61
PRK12370	553	invasion protein regulator; Provisional	98.56
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.56
KOG1126	638	consensus DNA-binding cell division cycle control	98.55
PF12854	34	PPR_1: PPR repeat	98.55
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.54
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.53
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.48
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.47
KOG1126	638	consensus DNA-binding cell division cycle control	98.45
PF12854	34	PPR_1: PPR repeat	98.45
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.43
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.39
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.36
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.35
KOG2003	840	consensus TPR repeat-containing protein [General f	98.31
PRK11189	296	lipoprotein NlpI; Provisional	98.27
PRK11189	296	lipoprotein NlpI; Provisional	98.23
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.22
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.17
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.16
KOG2003	840	consensus TPR repeat-containing protein [General f	98.15
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.11
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.09
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.06
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.0
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.0
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.0
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.95
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.93
KOG1129	478	consensus TPR repeat-containing protein [General f	97.88
KOG1129	478	consensus TPR repeat-containing protein [General f	97.87
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.87
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.85
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.84
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.82
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.82
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.8
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.78
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.76
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.74
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.69
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.66
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.63
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.61
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.59
PRK04841	903	transcriptional regulator MalT; Provisional	97.59
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.56
KOG0547	606	consensus Translocase of outer mitochondrial membr	97.52
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.51
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.46
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.44
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.41
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.39
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.39
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.36
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.34
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.33
PLN02789	320	farnesyltranstransferase	97.32
PLN02789	320	farnesyltranstransferase	97.32
PRK04841	903	transcriptional regulator MalT; Provisional	97.3
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.17
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.17
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.17
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.13
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.12
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.12
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.11
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.11
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.1
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.04
PRK15359	144	type III secretion system chaperone protein SscB;	97.03
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.84
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	96.84
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.81
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.81
PRK10370	198	formate-dependent nitrite reductase complex subuni	96.79
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.76
COG4783	484	Putative Zn-dependent protease, contains TPR repea	96.75
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	96.74
KOG1128	777	consensus Uncharacterized conserved protein, conta	96.74
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.67
PRK10370	198	formate-dependent nitrite reductase complex subuni	96.66
KOG3060	289	consensus Uncharacterized conserved protein [Funct	96.65
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.61
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	96.61
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.6
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.6
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.48
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.48
KOG1125	579	consensus TPR repeat-containing protein [General f	96.47
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.47
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.4
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.37
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.37
COG4783	484	Putative Zn-dependent protease, contains TPR repea	96.37
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.35
PRK15359	144	type III secretion system chaperone protein SscB;	96.32
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.29
KOG1125	579	consensus TPR repeat-containing protein [General f	96.23
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.17
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.12
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.93
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.76
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	95.6
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	95.46
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.42
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	95.41
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	95.28
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	95.25
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	95.22
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	95.21
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.09
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	95.05
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	95.01
KOG3060	289	consensus Uncharacterized conserved protein [Funct	94.91
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	94.9
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	94.81
PF12688	120	TPR_5: Tetratrico peptide repeat	94.63
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	94.3
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	94.25
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	94.18
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	94.17
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.17
KOG3941	406	consensus Intermediate in Toll signal transduction	93.85
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	93.78
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	93.78
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	93.68
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	93.67
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	93.54
KOG3785	557	consensus Uncharacterized conserved protein [Funct	93.51
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	93.44
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	93.43
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	93.26
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	93.03
PF03704	146	BTAD: Bacterial transcriptional activator domain;	92.8
KOG3941	406	consensus Intermediate in Toll signal transduction	92.74
PF12688	120	TPR_5: Tetratrico peptide repeat	92.69
KOG2796	366	consensus Uncharacterized conserved protein [Funct	92.64
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	92.62
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	92.34
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	92.31
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	92.12
KOG0553	304	consensus TPR repeat-containing protein [General f	92.07
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	91.86
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	91.71
KOG2796	366	consensus Uncharacterized conserved protein [Funct	91.55
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	91.27
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	91.27
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	91.1
PF03704	146	BTAD: Bacterial transcriptional activator domain;	91.09
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	90.98
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	90.8
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	90.32
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	89.92
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	89.84
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	89.82
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	89.8
smart00299	140	CLH Clathrin heavy chain repeat homology.	89.66
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	88.73
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	88.57
PRK10803	263	tol-pal system protein YbgF; Provisional	88.12
smart00299	140	CLH Clathrin heavy chain repeat homology.	88.04
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	88.0
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	87.81
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	87.68
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	87.19
PRK10803	263	tol-pal system protein YbgF; Provisional	87.08
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	86.15
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	85.73
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	85.16
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	84.99
PF13371	73	TPR_9: Tetratricopeptide repeat	84.81
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	84.04
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	83.91
KOG0553	304	consensus TPR repeat-containing protein [General f	83.41
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	82.9
PF13371	73	TPR_9: Tetratricopeptide repeat	82.58
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	81.87
PF14432	116	DYW_deaminase: DYW family of nucleic acid deaminas	81.82
PHA02875	413	ankyrin repeat protein; Provisional	81.28
PRK10635	158	bacterioferritin; Provisional	80.67

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=8.2e-69  Score=668.71  Aligned_cols=535  Identities=14%  Similarity=0.138  Sum_probs=432.2

Q ss_pred             CCCHHHHHHHHHHHHhCCChhhH----HHHHHcCCCCChhHHHHHHHHHHccCChHHH--------------------HH
Q 002761           20 QTGVVPIRSAMSSPEKKTRRKKQ----QRRQQKHGDSLLSTNGSVVSAAEQGLRLIFM--------------------EE   75 (883)
Q Consensus        20 ~pd~~syn~LI~~~~k~g~~~~A----~~M~~~gv~Pd~~ty~~ll~a~~~~~~~~~~--------------------~~   75 (883)
                      .||+++||++|++|++.|++++|    .+|...|+.||.+||+++|++|++.+.+..+                    ..
T Consensus       149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L  228 (857)
T PLN03077        149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL  228 (857)
T ss_pred             CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence            68999999999999999999999    6677779999999999999999877655433                    33


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002761           76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA  155 (883)
Q Consensus        76 L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~  155 (883)
                      +..|+++|+++.|.++|++|.    .||.++||+||.+|++.|++++|+++|++|...|+.||.+||+++|.+|++.|++
T Consensus       229 i~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~  304 (857)
T PLN03077        229 ITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE  304 (857)
T ss_pred             HHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence            457899999999999999997    6888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002761          156 TKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM  234 (883)
Q Consensus       156 ~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M  234 (883)
                      +.|.++|..|.+.|+.|+. +||+||.+|+++|++++|.++|++|..    ||.++||+||.+|++.|++++|+++|++|
T Consensus       305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M  380 (857)
T PLN03077        305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALM  380 (857)
T ss_pred             HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            9999999999988888887 888877777777777777777666643    45555555555555555555555555555


Q ss_pred             HHc-----------------------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCC
Q 002761          235 EAA-----------------------------------GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD  279 (883)
Q Consensus       235 ~~~-----------------------------------G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd  279 (883)
                      .+.                                   |+.|+..+||+||++|+++|++++|.++|++|.      .||
T Consensus       381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~------~~d  454 (857)
T PLN03077        381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP------EKD  454 (857)
T ss_pred             HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC------CCC
Confidence            544                                   455556677788888888889999999999888      688


Q ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCc-----
Q 002761          280 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK-----  354 (883)
Q Consensus       280 ~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~-----  354 (883)
                      .++||+||.+|+++|   +.++|+.+|++|..   +++||.+||+++|.+|++.|.++.+.+++..|.+.+..++     
T Consensus       455 ~vs~~~mi~~~~~~g---~~~eA~~lf~~m~~---~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n  528 (857)
T PLN03077        455 VISWTSIIAGLRLNN---RCFEALIFFRQMLL---TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN  528 (857)
T ss_pred             eeeHHHHHHHHHHCC---CHHHHHHHHHHHHh---CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech
Confidence            899999999999999   66799999999986   6999999999999999999999999999999988776543     


Q ss_pred             -cccccCCCCc----------------HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceeh-----hhhHHHHHH
Q 002761          355 -VLHNEGNFGD----------------PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMIL-----SRKYRTLVS  412 (883)
Q Consensus       355 -~~~~~~~~~d----------------tYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~-----~~~y~~Ll~  412 (883)
                       ++.+|.+|+.                +||+||.+|+++|+.++|+++|++|.+.|+  .|+..++     +|...++++
T Consensus       529 aLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~--~Pd~~T~~~ll~a~~~~g~v~  606 (857)
T PLN03077        529 ALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV--NPDEVTFISLLCACSRSGMVT  606 (857)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCcccHHHHHHHHhhcChHH
Confidence             3344555554                799999999999999999999999999998  4554441     244445555


Q ss_pred             HHhhhhHHhh-hhcchHHH-----HHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHHHHHHhhch-HH-
Q 002761          413 SWIEPLQEEA-ELGYEIDY-----IARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGK-KY-  484 (883)
Q Consensus       413 ~~~~~~~~m~-~~g~~~D~-----l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~~~c~~g~~-~~-  484 (883)
                      .+.+.+..|. .+|+.|+.     +...+.++|++++|.++++.|   +++||..+|       .++++.|+.++. +. 
T Consensus       607 ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~-------~aLl~ac~~~~~~e~~  676 (857)
T PLN03077        607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVW-------GALLNACRIHRHVELG  676 (857)
T ss_pred             HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHH-------HHHHHHHHHcCChHHH
Confidence            5566777776 45555542     223344499999999999855   799999888       666667777653 33 


Q ss_pred             ---HHHHHH-HHhcCCCccccC------CChhHHHHHHHHHHhhhcCCCccccCcccchHHHHHHHHHHHhhCCCCChhh
Q 002761          485 ---HRKLLR-TLQNEGPAVLGD------VSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGT  554 (883)
Q Consensus       485 ---A~~Ll~-eM~~~G~~~lls------~~~~~~~~vi~~l~k~gk~~~~~v~K~~g~S~~ev~~l~~ef~~~g~~~~~~  554 (883)
                         |.++++ ++.+.+.|++++      ++|+...+++..|++      ++++|.|||||+++++.+|.|.+++.+||++
T Consensus       677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~------~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~  750 (857)
T PLN03077        677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE------NGLTVDPGCSWVEVKGKVHAFLTDDESHPQI  750 (857)
T ss_pred             HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH------cCCCCCCCccEEEECCEEEEEecCCCCCcch
Confidence               444554 446788888766      799999999999998      8999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCCCcchhhchhHHHHHHH
Q 002761          555 RNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELI  596 (883)
Q Consensus       555 ~~~l~~~l~~~~~~~~~~G~~lyvp~~~~~~~~vdee~~~~~  596 (883)
                      .+ ||..|+.+.+.++..|   |+|+++.++++.+||.++.+
T Consensus       751 ~~-i~~~l~~l~~~~~~~g---~~~~~~~~~~~~~~~k~~~~  788 (857)
T PLN03077        751 KE-INTVLEGFYEKMKASG---LAGSESSSMDEIEVSKDDIF  788 (857)
T ss_pred             HH-HHHHHHHHHHHHHhCC---cCCCcchhccccHHHHHHHH
Confidence            99 9999999999999999   99999988865555555444

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.1e-64  Score=615.57  Aligned_cols=501  Identities=17%  Similarity=0.175  Sum_probs=443.1

Q ss_pred             CHHHHHHHHHHHHhCCChhhHH----HHHHc-CCCCChhHHHHHHHHHHccCChHHHHHHH-------------------
Q 002761           22 GVVPIRSAMSSPEKKTRRKKQQ----RRQQK-HGDSLLSTNGSVVSAAEQGLRLIFMEELM-------------------   77 (883)
Q Consensus        22 d~~syn~LI~~~~k~g~~~~A~----~M~~~-gv~Pd~~ty~~ll~a~~~~~~~~~~~~L~-------------------   77 (883)
                      +.++||++|.+|.+.|++++|.    .|... ++.||.+||++++.+|++.+.+..+..++                   
T Consensus        86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li  165 (697)
T PLN03081         86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL  165 (697)
T ss_pred             CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence            4568999999999999999994    44443 47899999999999999988776554443                   


Q ss_pred             -HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002761           78 -QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT  156 (883)
Q Consensus        78 -~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~  156 (883)
                       .|+++|+++.|.++|++|.    .||.++||+||.+|++.|++++|+++|++|...|+.||..||++++.+|++.|...
T Consensus       166 ~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~  241 (697)
T PLN03081        166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR  241 (697)
T ss_pred             HHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence             6889999999999999997    58999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002761          157 KGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME  235 (883)
Q Consensus       157 ~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~  235 (883)
                      .+.++|..+.+.|+.|+. +||+||++|+++|++++|.++|++|..    +|.++||+||.+|++.|++++|.++|++|.
T Consensus       242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~  317 (697)
T PLN03081        242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR  317 (697)
T ss_pred             HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            999999999999999998 999999999999999999999999965    788999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCC
Q 002761          236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR  315 (883)
Q Consensus       236 ~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~g  315 (883)
                      +.|+.||.+||+++|.+|++.|+++.|.+++..|.  +.|+.||..+||+||.+|++.|   +.++|.++|++|.+    
T Consensus       318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~--~~g~~~d~~~~~~Li~~y~k~G---~~~~A~~vf~~m~~----  388 (697)
T PLN03081        318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI--RTGFPLDIVANTALVDLYSKWG---RMEDARNVFDRMPR----  388 (697)
T ss_pred             HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH--HhCCCCCeeehHHHHHHHHHCC---CHHHHHHHHHhCCC----
Confidence            99999999999999999999999999999999999  7899999999999999999999   66799999999853    


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCC
Q 002761          316 LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK-DNQ  394 (883)
Q Consensus       316 i~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~-~Gi  394 (883)
                        ||.+|||+||.+|++.|+.++|.++|++|.+.|+.|+..        ||+++|.+|++.|.+++|.++|+.|.+ .|+
T Consensus       389 --~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~--------T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~  458 (697)
T PLN03081        389 --KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV--------TFLAVLSACRYSGLSEQGWEIFQSMSENHRI  458 (697)
T ss_pred             --CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH--------HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence              799999999999999999999999999999888888766        799999999999999999999999976 466


Q ss_pred             CCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHH
Q 002761          395 PVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFK  474 (883)
Q Consensus       395 ~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~  474 (883)
                        .|+..                     +|+|++|.+++    .|++++|.++++   ++++.|+..+|      +.++.
T Consensus       459 --~p~~~---------------------~y~~li~~l~r----~G~~~eA~~~~~---~~~~~p~~~~~------~~Ll~  502 (697)
T PLN03081        459 --KPRAM---------------------HYACMIELLGR----EGLLDEAYAMIR---RAPFKPTVNMW------AALLT  502 (697)
T ss_pred             --CCCcc---------------------chHhHHHHHHh----cCCHHHHHHHHH---HCCCCCCHHHH------HHHHH
Confidence              56553                     57778888888    999999999997   56899998776      24555


Q ss_pred             HHHHhhchHHHHHHHHHHhcC-----CCccccC------CChhHHHHHHHHHHhhhcCCCccccCcccchHHHHHHHHHH
Q 002761          475 QRCLEDGKKYHRKLLRTLQNE-----GPAVLGD------VSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEE  543 (883)
Q Consensus       475 ~~c~~g~~~~A~~Ll~eM~~~-----G~~~lls------~~~~~~~~vi~~l~k~gk~~~~~v~K~~g~S~~ev~~l~~e  543 (883)
                      +++..|+.+.|..+++++.+.     +.|.++.      ++|+....++..|++      ++++|.|||||+++.+.+|.
T Consensus       503 a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~------~g~~k~~g~s~i~~~~~~~~  576 (697)
T PLN03081        503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR------KGLSMHPACTWIEVKKQDHS  576 (697)
T ss_pred             HHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH------cCCccCCCeeEEEECCeEEE
Confidence            566777889999998887543     3343333      688888888888887      88999999999999999999


Q ss_pred             HhhCCCCChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhhchhHHHHHH
Q 002761          544 LDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDEL  595 (883)
Q Consensus       544 f~~~g~~~~~~~~~l~~~l~~~~~~~~~~G~~lyvp~~~~~~~~vdee~~~~  595 (883)
                      |.+++..||.+.+ ||+.|.++...++..|   |+|+++.+++++++|.++-
T Consensus       577 f~~~d~~h~~~~~-i~~~l~~l~~~~~~~g---y~~~~~~~~~~~~~~~~~~  624 (697)
T PLN03081        577 FFSGDRLHPQSRE-IYQKLDELMKEISEYG---YVAEENELLPDVDEDEEKV  624 (697)
T ss_pred             EccCCCCCccHHH-HHHHHHHHHHHHHHcC---CCCCcchhhccccHHHHHH
Confidence            9999999999988 9999999999999999   9999999999998776653

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.1e-60  Score=591.68  Aligned_cols=500  Identities=14%  Similarity=0.135  Sum_probs=423.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCChhhH----HHHHHcCC-CCChhHHHHHHHHHHccCChH----------------HHHHHH
Q 002761           19 SQTGVVPIRSAMSSPEKKTRRKKQ----QRRQQKHG-DSLLSTNGSVVSAAEQGLRLI----------------FMEELM   77 (883)
Q Consensus        19 ~~pd~~syn~LI~~~~k~g~~~~A----~~M~~~gv-~Pd~~ty~~ll~a~~~~~~~~----------------~~~~L~   77 (883)
                      ..++...|..++..|++.|++++|    .+|.+.|+ .|+..+++.++.+|++.+.+.                +...|.
T Consensus       366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~  445 (1060)
T PLN03218        366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS  445 (1060)
T ss_pred             CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            367788899999999999999999    45555564 577888888888888776543                333445


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002761           78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK  157 (883)
Q Consensus        78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~  157 (883)
                      .+++.|+++.|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|...|+.||.+||++||.+|++.|++++
T Consensus       446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee  525 (1060)
T PLN03218        446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK  525 (1060)
T ss_pred             HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence            68888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002761          158 GLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAK--GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM  234 (883)
Q Consensus       158 A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~--~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M  234 (883)
                      |.++|+.|.+.|+.||. +||+||.+|++.|++++|.++|++|..  .|+.||.+||++||.+|++.|++++|.++|+.|
T Consensus       526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M  605 (1060)
T PLN03218        526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI  605 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999998 999999999999999999999999976  678899999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC
Q 002761          235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK  314 (883)
Q Consensus       235 ~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~  314 (883)
                      .+.|+.|+..+||+||.+|++.|++++|.++|++|.  ..|+.||.+||++||.+|++.|   +.++|+++|++|.+  .
T Consensus       606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~--~~Gv~PD~~TynsLI~a~~k~G---~~eeA~~l~~eM~k--~  678 (1060)
T PLN03218        606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK--KKGVKPDEVFFSALVDVAGHAG---DLDKAFEILQDARK--Q  678 (1060)
T ss_pred             HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHH--c
Confidence            999999999999999999999999999999999999  7899999999999999999999   66699999999998  6


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 002761          315 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ  394 (883)
Q Consensus       315 gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi  394 (883)
                      |+.||..||++||.+|++.|++++|.++|+.|.+.+..|++.        +||+||.+|++.|++++|+++|++|...|+
T Consensus       679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvv--------tyN~LI~gy~k~G~~eeAlelf~eM~~~Gi  750 (1060)
T PLN03218        679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS--------TMNALITALCEGNQLPKALEVLSEMKRLGL  750 (1060)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH--------HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999998877777765        699999999999999999999999999987


Q ss_pred             CCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHH
Q 002761          395 PVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFK  474 (883)
Q Consensus       395 ~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~  474 (883)
                        .|+..+    |+.++.+|++                     .|.+++|..++..|.+.|+.||.  .+|++++..+..
T Consensus       751 --~Pd~~T----y~sLL~a~~k---------------------~G~le~A~~l~~~M~k~Gi~pd~--~tynsLIglc~~  801 (1060)
T PLN03218        751 --CPNTIT----YSILLVASER---------------------KDDADVGLDLLSQAKEDGIKPNL--VMCRCITGLCLR  801 (1060)
T ss_pred             --CCCHHH----HHHHHHHHHH---------------------CCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHH
Confidence              555544    7777665543                     89999999999999999999998  445555532221


Q ss_pred             HHHHh-------------------hchHHHHHHHHHHhcCCCccccCCChhHHHHHHHHHHhhhcCCCccccCcccchHH
Q 002761          475 QRCLE-------------------DGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKM  535 (883)
Q Consensus       475 ~~c~~-------------------g~~~~A~~Ll~eM~~~G~~~lls~~~~~~~~vi~~l~k~gk~~~~~v~K~~g~S~~  535 (883)
                      .+.+.                   .....|..+|++|.+.|+.|    +..+|..|+.++++.+.             +.
T Consensus       802 ~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P----d~~T~~~vL~cl~~~~~-------------~~  864 (1060)
T PLN03218        802 RFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP----TMEVLSQVLGCLQLPHD-------------AT  864 (1060)
T ss_pred             HHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHhccccc-------------HH
Confidence            11111                   12367999999999999999    99999999988766333             55


Q ss_pred             HHHHHHHHHhhCCC-CChhhHHHHHHHHHH-------HHHHHHhcCCCCCCCCCc
Q 002761          536 VVSELKEELDAQGL-PTDGTRNVLYQRVQK-------ARRINRSRGRPLWVPPVE  582 (883)
Q Consensus       536 ev~~l~~ef~~~g~-~~~~~~~~l~~~l~~-------~~~~~~~~G~~lyvp~~~  582 (883)
                      .+..++++|...+. +|..+|.+|+..+++       +-..|...|   .+|+++
T Consensus       865 ~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~G---i~p~~~  916 (1060)
T PLN03218        865 LRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLG---VVPSVS  916 (1060)
T ss_pred             HHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcC---CCCCcc
Confidence            67788888887776 777799989888753       345666799   888876

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.8e-59  Score=580.78  Aligned_cols=499  Identities=16%  Similarity=0.186  Sum_probs=419.7

Q ss_pred             CCHHHHHHHHHHHHhCCChhhH----HHHHHcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002761           21 TGVVPIRSAMSSPEKKTRRKKQ----QRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMI   96 (883)
Q Consensus        21 pd~~syn~LI~~~~k~g~~~~A----~~M~~~gv~Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~   96 (883)
                      ||.++||++|++|++.|+++.|    .+|.+.|+.||.++|+++|++|+               ++|+++.|.++|++|.
T Consensus       435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~---------------k~G~vd~A~~vf~eM~  499 (1060)
T PLN03218        435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA---------------KSGKVDAMFEVFHEMV  499 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---------------hCcCHHHHHHHHHHHH
Confidence            5566666666666666666666    34444566666666666666655               4588899999999999


Q ss_pred             HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCChhH
Q 002761           97 AAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQ  174 (883)
Q Consensus        97 ~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~--~g~~pdv  174 (883)
                      +.|+.||.++||+||.+|++.|++++|+++|++|...|+.||.+||++||.+|++.|++++|.++|.+|.+  .|+.|+.
T Consensus       500 ~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~  579 (1060)
T PLN03218        500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH  579 (1060)
T ss_pred             HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999986  6889998


Q ss_pred             -HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002761          175 -AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ  253 (883)
Q Consensus       175 -tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y  253 (883)
                       +||+||.+|+++|++++|.++|++|.+.|+.|+.++||+||.+|++.|++++|.++|++|.+.|+.||.+||++||++|
T Consensus       580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~  659 (1060)
T PLN03218        580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA  659 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence             9999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHc
Q 002761          254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY  333 (883)
Q Consensus       254 ~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~  333 (883)
                      ++.|++++|.++|+.|.  +.|+.||..+||+||.+|++.|   +.++|.++|++|.+  .|+.||.+||++||.+|++.
T Consensus       660 ~k~G~~eeA~~l~~eM~--k~G~~pd~~tynsLI~ay~k~G---~~eeA~~lf~eM~~--~g~~PdvvtyN~LI~gy~k~  732 (1060)
T PLN03218        660 GHAGDLDKAFEILQDAR--KQGIKLGTVSYSSLMGACSNAK---NWKKALELYEDIKS--IKLRPTVSTMNALITALCEG  732 (1060)
T ss_pred             HhCCCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHC
Confidence            99999999999999999  8999999999999999999999   77799999999998  69999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHH
Q 002761          334 CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSS  413 (883)
Q Consensus       334 G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~  413 (883)
                      |++++|.++|++|.+.++.|+..        ||++||.+|++.|++++|.++|.+|.+.|+  .|+..+    |++++.-
T Consensus       733 G~~eeAlelf~eM~~~Gi~Pd~~--------Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi--~pd~~t----ynsLIgl  798 (1060)
T PLN03218        733 NQLPKALEVLSEMKRLGLCPNTI--------TYSILLVASERKDDADVGLDLLSQAKEDGI--KPNLVM----CRCITGL  798 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCCHH--------HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCCHHH----HHHHHHH
Confidence            99999999999999988888766        799999999999999999999999999998  566655    7777754


Q ss_pred             HhhhhHHhhhhcchHHHH--HHHHHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHHHHHHhhchHHHHHHHHH
Q 002761          414 WIEPLQEEAELGYEIDYI--ARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRT  491 (883)
Q Consensus       414 ~~~~~~~m~~~g~~~D~l--~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~~~c~~g~~~~A~~Ll~e  491 (883)
                      |...+......+..+-.+  +......+..++|..+|++|.+.|+.||..+|  +    .+|.++|+.++...+..++++
T Consensus       799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~--~----~vL~cl~~~~~~~~~~~m~~~  872 (1060)
T PLN03218        799 CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL--S----QVLGCLQLPHDATLRNRLIEN  872 (1060)
T ss_pred             HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHH--H----HHHHHhcccccHHHHHHHHHH
Confidence            443222211111100000  01111234568899999999999999998555  4    444446888889999999999


Q ss_pred             HhcCCCccccCCChhHHHHHHHHHHhhhcCCCccccCcccchHHHHHHHHHHHhhCCCCChhh-----------------
Q 002761          492 LQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGT-----------------  554 (883)
Q Consensus       492 M~~~G~~~lls~~~~~~~~vi~~l~k~gk~~~~~v~K~~g~S~~ev~~l~~ef~~~g~~~~~~-----------------  554 (883)
                      |...+..|    +..+|+.++.++++.               ..++..++++|...|+.+.-.                 
T Consensus       873 m~~~~~~~----~~~~y~~Li~g~~~~---------------~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~~~~~~a  933 (1060)
T PLN03218        873 LGISADSQ----KQSNLSTLVDGFGEY---------------DPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEELPVFA  933 (1060)
T ss_pred             hccCCCCc----chhhhHHHHHhhccC---------------hHHHHHHHHHHHHcCCCCCcccccCceEEEcccCcchh
Confidence            99999888    999999999987541               235888999999999833322                 


Q ss_pred             -HHHHHHHHHHHHHHHHhcCCCCCCCCCcc
Q 002761          555 -RNVLYQRVQKARRINRSRGRPLWVPPVEE  583 (883)
Q Consensus       555 -~~~l~~~l~~~~~~~~~~G~~lyvp~~~~  583 (883)
                       .-.|...|..+.+...+ |  -..|.+-.
T Consensus       934 a~~~l~~wl~~~~~~~~~-g--~~lp~~~~  960 (1060)
T PLN03218        934 AEVYLLTILKGLKHRLAA-G--AKLPNVTI  960 (1060)
T ss_pred             HHHHHHHHHHHHHHHHhc-c--CcCCccee
Confidence             23455667776666655 4  26676654

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=8.1e-58  Score=569.98  Aligned_cols=504  Identities=13%  Similarity=0.094  Sum_probs=393.1

Q ss_pred             CCCHHHHHHHHHHHHhCCChhhH----HHHHHcCCCCChhHHHHHHHHHHccCChHHHHH--------------------
Q 002761           20 QTGVVPIRSAMSSPEKKTRRKKQ----QRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEE--------------------   75 (883)
Q Consensus        20 ~pd~~syn~LI~~~~k~g~~~~A----~~M~~~gv~Pd~~ty~~ll~a~~~~~~~~~~~~--------------------   75 (883)
                      +++..++|++|.+|++.|++++|    ..|.+.|+.|+..+|+.++++|.+.+.+..+..                    
T Consensus        48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l  127 (857)
T PLN03077         48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM  127 (857)
T ss_pred             ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence            46788899999999999999999    566667999999999999999987766544333                    


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002761           76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA  155 (883)
Q Consensus        76 L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~  155 (883)
                      +..|++.|+++.|.++|++|.    .||+++||+||.+|++.|++++|+++|++|...|+.||.+||+++|++|++.+++
T Consensus       128 i~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~  203 (857)
T PLN03077        128 LSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL  203 (857)
T ss_pred             HHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence            335789999999999999998    6888999999999999999999999999999889999888887777777666666


Q ss_pred             HHHHHHHHHHHHcCCChhH--------------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Q 002761          156 TKGLEILAAMEKINYDIRQ--------------------------------AWLILVEELVRNKYLEDANKVFLRGAKGG  203 (883)
Q Consensus       156 ~~A~~l~~~m~~~g~~pdv--------------------------------tyn~LI~~y~k~G~~eeA~~lf~~M~~~g  203 (883)
                      ..+.++|..|.+.|+.|++                                +||+||.+|++.|++++|.++|.+|.+.|
T Consensus       204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g  283 (857)
T PLN03077        204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS  283 (857)
T ss_pred             hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence            6666666666666655554                                45555555555555555566666666667


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHH
Q 002761          204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETY  283 (883)
Q Consensus       204 i~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~ty  283 (883)
                      +.||.+||+++|.+|++.|+++.|.+++..|.+.|+.||..+||+||.+|+++|++++|.++|++|.      .||.++|
T Consensus       284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------~~d~~s~  357 (857)
T PLN03077        284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME------TKDAVSW  357 (857)
T ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC------CCCeeeH
Confidence            7777777777777777777777777777777777888888889999999999999999999999999      7899999


Q ss_pred             HHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccc------c
Q 002761          284 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL------H  357 (883)
Q Consensus       284 n~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~------~  357 (883)
                      |+||.+|++.|   +.++|+++|++|.+  .|+.||..||+++|.+|++.|++++|.++|+.|.+.|..+...      .
T Consensus       358 n~li~~~~~~g---~~~~A~~lf~~M~~--~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~  432 (857)
T PLN03077        358 TAMISGYEKNG---LPDKALETYALMEQ--DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE  432 (857)
T ss_pred             HHHHHHHHhCC---CHHHHHHHHHHHHH--hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            99999999999   66699999999998  6999999999999999999999999999999999888766543      2


Q ss_pred             ccCCCCc-----------------HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhh----
Q 002761          358 NEGNFGD-----------------PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE----  416 (883)
Q Consensus       358 ~~~~~~d-----------------tYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~----  416 (883)
                      +|.++++                 +||+||.+|+++|+.++|+.+|++|.. ++  +|+..+    |.+++.+|.+    
T Consensus       433 ~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~--~pd~~t----~~~lL~a~~~~g~l  505 (857)
T PLN03077        433 MYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL--KPNSVT----LIAALSACARIGAL  505 (857)
T ss_pred             HHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC--CCCHhH----HHHHHHHHhhhchH
Confidence            2222222                 555555556555666666666666643 33  444433    5555554432    


Q ss_pred             -----hhHHhhhhcchH-----HHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHHHHHHhhchHHHH
Q 002761          417 -----PLQEEAELGYEI-----DYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHR  486 (883)
Q Consensus       417 -----~~~~m~~~g~~~-----D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~~~c~~g~~~~A~  486 (883)
                           ....+...|..+     +.+..++++.|.+++|..+|+.|     .||..+|  |    .+|.++|+.|+.++|.
T Consensus       506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~--n----~lI~~~~~~G~~~~A~  574 (857)
T PLN03077        506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSW--N----ILLTGYVAHGKGSMAV  574 (857)
T ss_pred             HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhH--H----HHHHHHHHcCCHHHHH
Confidence                 223333344333     34556677789999999888854     6777555  3    6677799999999999


Q ss_pred             HHHHHHhcCCCccccCCChhHHHHHHHHHHhhhcCCCccccCcccchHHHHHHHHHHHh-hCCC-CChhhHHHHHHHHHH
Q 002761          487 KLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELD-AQGL-PTDGTRNVLYQRVQK  564 (883)
Q Consensus       487 ~Ll~eM~~~G~~~lls~~~~~~~~vi~~l~k~gk~~~~~v~K~~g~S~~ev~~l~~ef~-~~g~-~~~~~~~~l~~~l~~  564 (883)
                      ++|++|.+.|+.|    +..||..++.++.+.|.             +.++..++++|. ..|+ |...+|.++...+.+
T Consensus       575 ~lf~~M~~~g~~P----d~~T~~~ll~a~~~~g~-------------v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r  637 (857)
T PLN03077        575 ELFNRMVESGVNP----DEVTFISLLCACSRSGM-------------VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR  637 (857)
T ss_pred             HHHHHHHHcCCCC----CcccHHHHHHHHhhcCh-------------HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence            9999999999999    99999999999988776             788999999999 5677 777799999999999


Q ss_pred             HHHHHHhcC
Q 002761          565 ARRINRSRG  573 (883)
Q Consensus       565 ~~~~~~~~G  573 (883)
                      .++..++..
T Consensus       638 ~G~~~eA~~  646 (857)
T PLN03077        638 AGKLTEAYN  646 (857)
T ss_pred             CCCHHHHHH
Confidence            888877765

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.1e-54  Score=530.18  Aligned_cols=420  Identities=14%  Similarity=0.114  Sum_probs=385.4

Q ss_pred             CCCHHHHHHHHHHHHhCCChhhH----HHHHHcCCCCChhHHHHHHHHHHccCChHHHHHH----------------HHH
Q 002761           20 QTGVVPIRSAMSSPEKKTRRKKQ----QRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEEL----------------MQH   79 (883)
Q Consensus        20 ~pd~~syn~LI~~~~k~g~~~~A----~~M~~~gv~Pd~~ty~~ll~a~~~~~~~~~~~~L----------------~~~   79 (883)
                      .||..+|+++|.+|++.+.++.|    ..|.+.|+.||.++||.++++|++.+.++.+..+                .+|
T Consensus       120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~  199 (697)
T PLN03081        120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGL  199 (697)
T ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHH
Confidence            57999999999999999999888    6677779999999999999999999987655554                479


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002761           80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL  159 (883)
Q Consensus        80 ~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~  159 (883)
                      ++.|++++|..+|++|.+.|+.|+..+|+++|.+|++.|..+.+.+++..|.+.|+.||..+|++||.+|++.|++++|.
T Consensus       200 ~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~  279 (697)
T PLN03081        200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR  279 (697)
T ss_pred             HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761          160 EILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG  238 (883)
Q Consensus       160 ~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G  238 (883)
                      ++|+.|..    +++ +||+||.+|++.|++++|.++|++|.+.|+.||.+||+++|.+|++.|++++|.+++..|.+.|
T Consensus       280 ~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g  355 (697)
T PLN03081        280 CVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG  355 (697)
T ss_pred             HHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence            99999965    355 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC
Q 002761          239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP  318 (883)
Q Consensus       239 ~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P  318 (883)
                      +.||..+||+||++|+++|++++|.++|++|.      .||.+|||+||.+|+++|   +.++|+++|++|.+  .|+.|
T Consensus       356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~------~~d~~t~n~lI~~y~~~G---~~~~A~~lf~~M~~--~g~~P  424 (697)
T PLN03081        356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMP------RKNLISWNALIAGYGNHG---RGTKAVEMFERMIA--EGVAP  424 (697)
T ss_pred             CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC------CCCeeeHHHHHHHHHHcC---CHHHHHHHHHHHHH--hCCCC
Confidence            99999999999999999999999999999999      799999999999999999   77799999999998  79999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 002761          319 NVKTYALLVECFTKYCAVTEAIRHFRALQN-YEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP  397 (883)
Q Consensus       319 d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~-~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~  397 (883)
                      |.+||+++|.+|++.|.+++|.++|+.|.+ .++.|+..        +|++||++|+++|++++|.++|++|     ++.
T Consensus       425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~--------~y~~li~~l~r~G~~~eA~~~~~~~-----~~~  491 (697)
T PLN03081        425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM--------HYACMIELLGREGLLDEAYAMIRRA-----PFK  491 (697)
T ss_pred             CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc--------chHhHHHHHHhcCCHHHHHHHHHHC-----CCC
Confidence            999999999999999999999999999985 57777766        5999999999999999999999987     346


Q ss_pred             CcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHHHHH
Q 002761          398 PRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRC  477 (883)
Q Consensus       398 p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~~~c  477 (883)
                      |+..+    |++|+.+|..                     .|.++.|...++.+.  ++.|+. ..+|+    .++..||
T Consensus       492 p~~~~----~~~Ll~a~~~---------------------~g~~~~a~~~~~~l~--~~~p~~-~~~y~----~L~~~y~  539 (697)
T PLN03081        492 PTVNM----WAALLTACRI---------------------HKNLELGRLAAEKLY--GMGPEK-LNNYV----VLLNLYN  539 (697)
T ss_pred             CCHHH----HHHHHHHHHH---------------------cCCcHHHHHHHHHHh--CCCCCC-CcchH----HHHHHHH
Confidence            66654    8888876654                     899999999998774  556752 23455    4455699


Q ss_pred             HhhchHHHHHHHHHHhcCCCcc
Q 002761          478 LEDGKKYHRKLLRTLQNEGPAV  499 (883)
Q Consensus       478 ~~g~~~~A~~Ll~eM~~~G~~~  499 (883)
                      +.|++++|.+++++|.+.|+..
T Consensus       540 ~~G~~~~A~~v~~~m~~~g~~k  561 (697)
T PLN03081        540 SSGRQAEAAKVVETLKRKGLSM  561 (697)
T ss_pred             hCCCHHHHHHHHHHHHHcCCcc
Confidence            9999999999999999999863

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.89  E-value=2.1e-18  Score=214.09  Aligned_cols=469  Identities=14%  Similarity=0.078  Sum_probs=284.9

Q ss_pred             CCHHHHHHHHHHHHhCCChhhHHHHHHc--CCCCCh-hHHHHHHHHHHccCChHHHH-------------------HHHH
Q 002761           21 TGVVPIRSAMSSPEKKTRRKKQQRRQQK--HGDSLL-STNGSVVSAAEQGLRLIFME-------------------ELMQ   78 (883)
Q Consensus        21 pd~~syn~LI~~~~k~g~~~~A~~M~~~--gv~Pd~-~ty~~ll~a~~~~~~~~~~~-------------------~L~~   78 (883)
                      .+...|..+...+...|++++|.+.++.  ...|+. .....++..+.+.+.+.-+.                   ....
T Consensus       395 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  474 (899)
T TIGR02917       395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI  474 (899)
T ss_pred             CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            3455666666666777777766444433  122221 22222333343333332211                   1123


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG  158 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A  158 (883)
                      +...|+++.|...|+++.+.. +.+...+..+...+...|++++|.++|+++.... +.+..++..+...+.+.|+.++|
T Consensus       475 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A  552 (899)
T TIGR02917       475 YLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEA  552 (899)
T ss_pred             HHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHH
Confidence            556677777777777776543 3345566667777777777777777777776543 23566677777777777777777


Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761          159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG  238 (883)
Q Consensus       159 ~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G  238 (883)
                      ..++.++.+.+......+..+...|.+.|++++|..+++.+.... +.+..+|..+..+|.+.|++++|...|+.+.+..
T Consensus       553 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  631 (899)
T TIGR02917       553 VAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ  631 (899)
T ss_pred             HHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            777777766543322266677777777777777777777776532 3455677777777777777777777777776543


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC
Q 002761          239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP  318 (883)
Q Consensus       239 ~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P  318 (883)
                       +.+...+..+...|.+.|++++|..+|+++..   ..+.+..+|+.+...+...|   +.++|.++++.+.+   ...+
T Consensus       632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~---~~~~  701 (899)
T TIGR02917       632 -PDSALALLLLADAYAVMKNYAKAITSLKRALE---LKPDNTEAQIGLAQLLLAAK---RTESAKKIAKSLQK---QHPK  701 (899)
T ss_pred             -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh---hCcC
Confidence             23556667777777777777777777777662   12335667777777777777   55577777777765   2234


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCC
Q 002761          319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPP  398 (883)
Q Consensus       319 d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p  398 (883)
                      +..++..+...+.+.|++++|...|+.+......+          .++..+...|.+.|++++|.+.+.++....   |.
T Consensus       702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---~~  768 (899)
T TIGR02917       702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS----------QNAIKLHRALLASGNTAEAVKTLEAWLKTH---PN  768 (899)
T ss_pred             ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc----------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC
Confidence            55566666667777777777777777776543322          134566777777777777777777776654   33


Q ss_pred             cceehhhhHHHHHH---------HHhhhhHHhhhhc----chHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceec
Q 002761          399 RAMILSRKYRTLVS---------SWIEPLQEEAELG----YEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIY  465 (883)
Q Consensus       399 ~~~~~~~~y~~Ll~---------~~~~~~~~m~~~g----~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty  465 (883)
                      +...    +..+..         .+...+.......    .....+++.+...|. .+|..+++....  ..|+....  
T Consensus       769 ~~~~----~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~--  839 (899)
T TIGR02917       769 DAVL----RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAI--  839 (899)
T ss_pred             CHHH----HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHH--
Confidence            3322    111111         1222222222111    112245566666777 778888875543  34443222  


Q ss_pred             cchHHHHHHHHHHhhchHHHHHHHHHHhcCCCccccCCChhHHHHHHHHHHhhhcCCCccccCcccchHHHHHHHHHHHh
Q 002761          466 SNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELD  545 (883)
Q Consensus       466 ~~li~~~l~~~c~~g~~~~A~~Ll~eM~~~G~~~lls~~~~~~~~vi~~l~k~gk~~~~~v~K~~g~S~~ev~~l~~ef~  545 (883)
                         ...+...+...|+.++|..+++++.+.+..     +...+..+...+++.|+             +.++...+..|+
T Consensus       840 ---~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~~~  898 (899)
T TIGR02917       840 ---LDTLGWLLVEKGEADRALPLLRKAVNIAPE-----AAAIRYHLALALLATGR-------------KAEARKELDKLL  898 (899)
T ss_pred             ---HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHcCC-------------HHHHHHHHHHHh
Confidence               123344467778888899999888776643     56777777777887666             556666665553

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.88  E-value=1.6e-17  Score=206.34  Aligned_cols=415  Identities=11%  Similarity=0.016  Sum_probs=218.2

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG  158 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A  158 (883)
                      +.+.|++++|..+|+++.+.. +.+...|..+...+...|++++|.+.|..+...... +......++..+.+.|++++|
T Consensus       373 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A  450 (899)
T TIGR02917       373 YLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKA  450 (899)
T ss_pred             HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHH
Confidence            455566666666666666543 234455666666666666666666666666544321 223344455566666666666


Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761          159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG  238 (883)
Q Consensus       159 ~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G  238 (883)
                      ..++..+.+.......+|+.+...|.+.|++++|...|.++.+.. +.+...+..+...+...|++++|.++|+.+....
T Consensus       451 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  529 (899)
T TIGR02917       451 LAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID  529 (899)
T ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            666666655432222256666666666666666666666665432 1233455556666666666666666666665543


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC
Q 002761          239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP  318 (883)
Q Consensus       239 ~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P  318 (883)
                       +.+..+++.+...|.+.|+.++|..+|+++..  . .+.+...+..+...|.+.|   +.++|+.+++.+..   ....
T Consensus       530 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~---~~~~  599 (899)
T TIGR02917       530 -PKNLRAILALAGLYLRTGNEEEAVAWLEKAAE--L-NPQEIEPALALAQYYLGKG---QLKKALAILNEAAD---AAPD  599 (899)
T ss_pred             -cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h-CccchhHHHHHHHHHHHCC---CHHHHHHHHHHHHH---cCCC
Confidence             22455566666666666666666666666541  1 1334455556666666666   44466666666654   2334


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCC
Q 002761          319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPP  398 (883)
Q Consensus       319 d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p  398 (883)
                      +..+|..+..+|.+.|++++|...|+.+.+......         ..|..+...|.+.|++++|...|+++.+..   |.
T Consensus       600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~  667 (899)
T TIGR02917       600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA---------LALLLLADAYAVMKNYAKAITSLKRALELK---PD  667 (899)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC
Confidence            455566666666666666666666666654322111         134556666666666666666666665443   22


Q ss_pred             cceehhhhHHHHHHHH---------hhhhHHhhhh----cchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceec
Q 002761          399 RAMILSRKYRTLVSSW---------IEPLQEEAEL----GYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIY  465 (883)
Q Consensus       399 ~~~~~~~~y~~Ll~~~---------~~~~~~m~~~----g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty  465 (883)
                      +...    +..+....         ...+..+...    ......++..+...|..++|..++..+....  |+...+  
T Consensus       668 ~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~--  739 (899)
T TIGR02917       668 NTEA----QIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA--  739 (899)
T ss_pred             CHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH--
Confidence            2211    11111111         1111111100    0011234444555677777777776554432  333222  


Q ss_pred             cchHHHHHHHHHHhhchHHHHHHHHHHhcCCCccccCCChhHHHHHHHHHHhhhcCCCccccCcccchHHHHHHHHHHHh
Q 002761          466 SNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELD  545 (883)
Q Consensus       466 ~~li~~~l~~~c~~g~~~~A~~Ll~eM~~~G~~~lls~~~~~~~~vi~~l~k~gk~~~~~v~K~~g~S~~ev~~l~~ef~  545 (883)
                          ..+...+++.|+..+|.+.++.+.+....     +...+..+-..+.+.|+             +.++...+..+.
T Consensus       740 ----~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-----~~~~~~~la~~~~~~g~-------------~~~A~~~~~~~~  797 (899)
T TIGR02917       740 ----IKLHRALLASGNTAEAVKTLEAWLKTHPN-----DAVLRTALAELYLAQKD-------------YDKAIKHYRTVV  797 (899)
T ss_pred             ----HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCcC-------------HHHHHHHHHHHH
Confidence                13444566667777777777766543321     33344444344444333             555555555555


Q ss_pred             hCC
Q 002761          546 AQG  548 (883)
Q Consensus       546 ~~g  548 (883)
                      ...
T Consensus       798 ~~~  800 (899)
T TIGR02917       798 KKA  800 (899)
T ss_pred             HhC
Confidence            554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.81  E-value=6.4e-17  Score=183.84  Aligned_cols=300  Identities=17%  Similarity=0.097  Sum_probs=246.1

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCH
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL---HETLIALARLFGSKGLA  155 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd---~~ty~~LI~a~~~~g~~  155 (883)
                      +...|+++.|...|.++.+.+ +.+..+|..+...|.+.|++++|..+++.+...+..++   ..++..+...|.+.|++
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~  123 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL  123 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence            456789999999999999874 34567899999999999999999999999987643322   35688899999999999


Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChHHHHHHH
Q 002761          156 TKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD----EIYDLMIAEDCKAGDHSNALEIA  231 (883)
Q Consensus       156 ~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~----~tyn~LI~a~~k~g~~eeA~~lf  231 (883)
                      +.|..+|.++.+.......+++.++..|.+.|++++|..+|+.+.+.+..+..    ..|..+...+.+.|++++|...|
T Consensus       124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  203 (389)
T PRK11788        124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL  203 (389)
T ss_pred             HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            99999999999864333338999999999999999999999999886533322    34667888889999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 002761          232 YEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE  311 (883)
Q Consensus       232 ~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~  311 (883)
                      +++.+.. +.+...+..+...|.+.|++++|.++|+++.  ..+-.....+++.++.+|++.|   +.++|...|+++.+
T Consensus       204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g---~~~~A~~~l~~~~~  277 (389)
T PRK11788        204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVE--EQDPEYLSEVLPKLMECYQALG---DEAEGLEFLRRALE  277 (389)
T ss_pred             HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHChhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Confidence            9998764 2346688889999999999999999999988  3221222467899999999999   66699999999987


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHH---cCCHHHHHHHHHH
Q 002761          312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR---EGRIIELLEALEA  388 (883)
Q Consensus       312 ~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~---~G~~~eA~~lf~~  388 (883)
                          ..|+...+..+...+.+.|++++|..+|+.+.+..  |...        +++.++..++.   .|+..+|+.+|++
T Consensus       278 ----~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--P~~~--------~~~~l~~~~~~~~~~g~~~~a~~~~~~  343 (389)
T PRK11788        278 ----EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRH--PSLR--------GFHRLLDYHLAEAEEGRAKESLLLLRD  343 (389)
T ss_pred             ----hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--cCHH--------HHHHHHHHhhhccCCccchhHHHHHHH
Confidence                45887778889999999999999999999887643  2222        46778888775   5699999999999


Q ss_pred             HhhCCCCCCCc
Q 002761          389 MAKDNQPVPPR  399 (883)
Q Consensus       389 M~~~Gi~i~p~  399 (883)
                      |.++++...|+
T Consensus       344 ~~~~~~~~~p~  354 (389)
T PRK11788        344 LVGEQLKRKPR  354 (389)
T ss_pred             HHHHHHhCCCC
Confidence            99999865554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.78  E-value=2.7e-16  Score=178.72  Aligned_cols=311  Identities=13%  Similarity=0.067  Sum_probs=245.0

Q ss_pred             HHHHHhCCChhhHHHHHHc--CCCCChh-HHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---
Q 002761           30 MSSPEKKTRRKKQQRRQQK--HGDSLLS-TNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPG---  103 (883)
Q Consensus        30 I~~~~k~g~~~~A~~M~~~--gv~Pd~~-ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd---  103 (883)
                      ...+...|.+++|...+..  ...|+.. ++..+...               +.+.|+++.|..+++.+...+..++   
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~---------------~~~~g~~~~A~~~~~~~l~~~~~~~~~~  106 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNL---------------FRRRGEVDRAIRIHQNLLSRPDLTREQR  106 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHH---------------HHHcCcHHHHHHHHHHHhcCCCCCHHHH
Confidence            3345677899999666654  2345432 33333333               4556888999999999987542222   


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChh----H-HHHH
Q 002761          104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR----Q-AWLI  178 (883)
Q Consensus       104 ~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pd----v-tyn~  178 (883)
                      ...|+.+...|.+.|++++|..+|.++... -.++..+++.++..+.+.|++++|.+.+..+.+.+..+.    . .|..
T Consensus       107 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  185 (389)
T PRK11788        107 LLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE  185 (389)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            356889999999999999999999999875 335678899999999999999999999999998765432    2 4567


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 002761          179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI  258 (883)
Q Consensus       179 LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~  258 (883)
                      +...|.+.|++++|..+|+++.+.. +.+..++..+...|.+.|++++|.++|+++...+......+++.+..+|++.|+
T Consensus       186 la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~  264 (389)
T PRK11788        186 LAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD  264 (389)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence            8888999999999999999998743 234568888999999999999999999999976433335678999999999999


Q ss_pred             HHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHH---cCC
Q 002761          259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK---YCA  335 (883)
Q Consensus       259 ~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k---~G~  335 (883)
                      +++|...|+.+.+  .  .|+...++.+...|.+.|   +.++|..+|.++.+    ..|+..+++.++..+..   .|+
T Consensus       265 ~~~A~~~l~~~~~--~--~p~~~~~~~la~~~~~~g---~~~~A~~~l~~~l~----~~P~~~~~~~l~~~~~~~~~~g~  333 (389)
T PRK11788        265 EAEGLEFLRRALE--E--YPGADLLLALAQLLEEQE---GPEAAQALLREQLR----RHPSLRGFHRLLDYHLAEAEEGR  333 (389)
T ss_pred             HHHHHHHHHHHHH--h--CCCchHHHHHHHHHHHhC---CHHHHHHHHHHHHH----hCcCHHHHHHHHHHhhhccCCcc
Confidence            9999999999883  2  577777799999999999   66699999999986    47999999999988775   568


Q ss_pred             HHHHHHHHHHHHhCCCCCccccccCCCCcHHHH
Q 002761          336 VTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL  368 (883)
Q Consensus       336 ~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~  368 (883)
                      .+++..+|+.|.+.++.+...+....||.+...
T Consensus       334 ~~~a~~~~~~~~~~~~~~~p~~~c~~cg~~~~~  366 (389)
T PRK11788        334 AKESLLLLRDLVGEQLKRKPRYRCRNCGFTART  366 (389)
T ss_pred             chhHHHHHHHHHHHHHhCCCCEECCCCCCCCcc
Confidence            999999999999876655544444455553333

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.58  E-value=4.4e-11  Score=145.37  Aligned_cols=328  Identities=11%  Similarity=-0.004  Sum_probs=246.9

Q ss_pred             HHHHHHHhCCChhhHHHHHHc--CCCCChhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 002761           28 SAMSSPEKKTRRKKQQRRQQK--HGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPR  105 (883)
Q Consensus        28 ~LI~~~~k~g~~~~A~~M~~~--gv~Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~  105 (883)
                      -++..+.+.|++.+|..+.+.  ...|+..-...+              ........|+++.|...|+++.... +.+..
T Consensus        47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~--------------l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~  111 (656)
T PRK15174         47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRR--------------WVISPLASSQPDAVLQVVNKLLAVN-VCQPE  111 (656)
T ss_pred             HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHH--------------HhhhHhhcCCHHHHHHHHHHHHHhC-CCChH
Confidence            345666677777777555442  222322211111              1112345799999999999998764 34567


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 002761          106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELV  184 (883)
Q Consensus       106 tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~  184 (883)
                      .|..+...+.+.|++++|...|++....  .| +...+..+..++...|++++|...+..+......+...+..+. .+.
T Consensus       112 a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~  188 (656)
T PRK15174        112 DVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFL  188 (656)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHH
Confidence            7888889999999999999999998764  44 4667888899999999999999999988877655444443343 488


Q ss_pred             HCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH---
Q 002761          185 RNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV---  261 (883)
Q Consensus       185 k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~---  261 (883)
                      +.|++++|..+++.+......++...+..+..++.+.|++++|...|+...... +.+...++.+-..|.+.|++++   
T Consensus       189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~  267 (656)
T PRK15174        189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKL  267 (656)
T ss_pred             HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHH
Confidence            899999999999998775433445566667788999999999999999998764 3357788889999999999986   


Q ss_pred             -HHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 002761          262 -AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEA  339 (883)
Q Consensus       262 -A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~~Ty~~LI~a~~k~G~~eeA  339 (883)
                       |...|+....  . -+.+...+..+...|.+.|   +.++|+..+++...    ..|+ ...+..+..+|.+.|++++|
T Consensus       268 ~A~~~~~~Al~--l-~P~~~~a~~~lg~~l~~~g---~~~eA~~~l~~al~----l~P~~~~a~~~La~~l~~~G~~~eA  337 (656)
T PRK15174        268 QAAEHWRHALQ--F-NSDNVRIVTLYADALIRTG---QNEKAIPLLQQSLA----THPDLPYVRAMYARALRQVGQYTAA  337 (656)
T ss_pred             HHHHHHHHHHh--h-CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence             7999998772  1 1345678999999999999   66699999999886    4565 45566777899999999999


Q ss_pred             HHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761          340 IRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN  393 (883)
Q Consensus       340 ~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~G  393 (883)
                      ...|+.+.........         .+..+..+|...|+.++|...|++..+..
T Consensus       338 ~~~l~~al~~~P~~~~---------~~~~~a~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        338 SDEFVQLAREKGVTSK---------WNRYAAAALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             HHHHHHHHHhCccchH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            9999998864332211         23445678899999999999999987764

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=1.2e-10  Score=126.60  Aligned_cols=321  Identities=13%  Similarity=0.137  Sum_probs=241.5

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhCCChhhH----HHHHHcCCCCChhHHHHHHHHHH--ccCChHHHHH--HH-----
Q 002761           11 FISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQ----QRRQQKHGDSLLSTNGSVVSAAE--QGLRLIFMEE--LM-----   77 (883)
Q Consensus        11 ~~~~~~~p~~pd~~syn~LI~~~~k~g~~~~A----~~M~~~gv~Pd~~ty~~ll~a~~--~~~~~~~~~~--L~-----   77 (883)
                      |.+.+... +-.+.+=|.|+...+. |.+.++    ..|...|+..+...--.|+.-.+  ......|+..  ..     
T Consensus       105 F~P~~l~~-~~~V~~E~nL~kmIS~-~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~  182 (625)
T KOG4422|consen  105 FRPRHLAD-PLQVETENNLLKMISS-REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNF  182 (625)
T ss_pred             cCchhcCC-chhhcchhHHHHHHhh-cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccc
Confidence            44444444 4556777888776665 455555    78888888888777666665543  2333333322  11     


Q ss_pred             -----HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002761           78 -----QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSK  152 (883)
Q Consensus        78 -----~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~  152 (883)
                           .-.|.|.+.+   ++-+..    +.+..||.+||.|+|+--..+.|.+++++-.....+.+..+||.+|.+-.  
T Consensus       183 ~E~S~~sWK~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S--  253 (625)
T KOG4422|consen  183 GEDSTSSWKSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS--  253 (625)
T ss_pred             ccccccccccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH--
Confidence                 1223344333   333333    45778999999999999999999999999998888999999999998764  


Q ss_pred             CCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH-
Q 002761          153 GLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDA----NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSN-  226 (883)
Q Consensus       153 g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA----~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~ee-  226 (883)
                        +.....++.+|....+.||. |+|+++.+.++.|+++.|    .+++.+|++-|+.|...+|..+|.-+++.++..+ 
T Consensus       254 --~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~  331 (625)
T KOG4422|consen  254 --YSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV  331 (625)
T ss_pred             --hhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence              34458999999999999999 999999999999988765    5677899999999999999999999999988754 


Q ss_pred             HHHHHHHHH----HcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCC--CCCCC---HHHHHHHHHHHHHc
Q 002761          227 ALEIAYEME----AAGRMA----TTFHFNHLLSCQATCGIPEVAFATFENMEYGED--YMKPD---TETYNCVIQAYTRA  293 (883)
Q Consensus       227 A~~lf~~M~----~~G~~P----d~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~--gi~pd---~~tyn~LI~ay~~~  293 (883)
                      |..++.++.    .+.++|    |..-|.+-++.|.+..+.+.|.++..-.+.|+.  -+.|+   .+-|.-+....|+.
T Consensus       332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~  411 (625)
T KOG4422|consen  332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM  411 (625)
T ss_pred             hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence            444444444    333444    455667788888899999999999888775322  23333   23466788888888


Q ss_pred             CCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002761          294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY  349 (883)
Q Consensus       294 G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~  349 (883)
                      .   ..+..+..|..|+-  +-+-|+..+...++.|..-.|.++---+++..++..
T Consensus       412 e---s~~~~~~~Y~~lVP--~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~  462 (625)
T KOG4422|consen  412 E---SIDVTLKWYEDLVP--SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY  462 (625)
T ss_pred             H---HHHHHHHHHHHhcc--ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence            8   56689999999987  578899999999999999999999999999888763

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.55  E-value=3.2e-11  Score=146.56  Aligned_cols=327  Identities=11%  Similarity=0.058  Sum_probs=250.3

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 002761           76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLIALARLFGSKGL  154 (883)
Q Consensus        76 L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~~LI~a~~~~g~  154 (883)
                      +..+.+.|+++.|+.++......... +...+..+..++...|++++|...|+++...  .| +...+..+...+.+.|+
T Consensus        49 ~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~  125 (656)
T PRK15174         49 AIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQ  125 (656)
T ss_pred             HHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCC
Confidence            34566789999999999999876533 3445555667777899999999999999875  44 45678888889999999


Q ss_pred             HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002761          155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM  234 (883)
Q Consensus       155 ~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M  234 (883)
                      ++.|...+.++.+........+..+...|...|++++|...++.+...... +...+..+ ..+...|++++|..+++.+
T Consensus       126 ~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~  203 (656)
T PRK15174        126 YATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARAL  203 (656)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence            999999999999875433338889999999999999999999988764322 22333333 3488899999999999998


Q ss_pred             HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccH-HHHHHHHHHhHhcc
Q 002761          235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV-QDVAELLGMMVEDH  313 (883)
Q Consensus       235 ~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~-~eAl~lf~~M~~~~  313 (883)
                      ....-.++...+..+...|.+.|++++|...|+...  ... +.+...++.+-..|...|+++.+ .+|...|++..+  
T Consensus       204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al--~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--  278 (656)
T PRK15174        204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESAL--ARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--  278 (656)
T ss_pred             HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH--hcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--
Confidence            877544555666677788999999999999999988  322 44677888899999999965411 148999999986  


Q ss_pred             CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 002761          314 KRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD  392 (883)
Q Consensus       314 ~gi~Pd-~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~  392 (883)
                        +.|+ ...+..+...+...|++++|...++..........         ..+..+...|.+.|++++|+..|+++...
T Consensus       279 --l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~---------~a~~~La~~l~~~G~~~eA~~~l~~al~~  347 (656)
T PRK15174        279 --FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP---------YVRAMYARALRQVGQYTAASDEFVQLARE  347 (656)
T ss_pred             --hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence              4565 56788888999999999999999999987543322         24667889999999999999999999876


Q ss_pred             CCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHh
Q 002761          393 NQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRR  451 (883)
Q Consensus       393 Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m  451 (883)
                      +   |.+...    +.                     .++..+...|..++|...++..
T Consensus       348 ~---P~~~~~----~~---------------------~~a~al~~~G~~deA~~~l~~a  378 (656)
T PRK15174        348 K---GVTSKW----NR---------------------YAAAALLQAGKTSEAESVFEHY  378 (656)
T ss_pred             C---ccchHH----HH---------------------HHHHHHHHCCCHHHHHHHHHHH
Confidence            4   332211    00                     1123334488888888888754

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.50  E-value=6.2e-10  Score=134.84  Aligned_cols=367  Identities=11%  Similarity=-0.010  Sum_probs=262.1

Q ss_pred             HHHHHHHHHhCCChhhHHHHHHc--CCCCChhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 002761           26 IRSAMSSPEKKTRRKKQQRRQQK--HGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPG  103 (883)
Q Consensus        26 yn~LI~~~~k~g~~~~A~~M~~~--gv~Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd  103 (883)
                      +...-..|.+.|++++|......  .+.|+...|..+-.               .|.+.|+++.|...+....+.. +.+
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~---------------~~~~l~~~~~Ai~~~~~al~l~-p~~  193 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAA---------------CHNALGDWEKVVEDTTAALELD-PDY  193 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHH---------------HHHHhCCHHHHHHHHHHHHHcC-CCC
Confidence            34556788899999999776665  45676554443322               3556688899999999988764 345


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-C---------------------------CC----CHHHHHHH------
Q 002761          104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSAG-V---------------------------RP----LHETLIAL------  145 (883)
Q Consensus       104 ~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~G-i---------------------------~P----d~~ty~~L------  145 (883)
                      ...|..+-.+|...|++++|+.-|......+ .                           .|    ........      
T Consensus       194 ~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  273 (615)
T TIGR00990       194 SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRP  273 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccC
Confidence            6788889999999999999987664432111 0                           01    00000000      


Q ss_pred             ---------------------HHHH------HhcCCHHHHHHHHHHHHHcC-CChhH--HHHHHHHHHHHCCCHHHHHHH
Q 002761          146 ---------------------ARLF------GSKGLATKGLEILAAMEKIN-YDIRQ--AWLILVEELVRNKYLEDANKV  195 (883)
Q Consensus       146 ---------------------I~a~------~~~g~~~~A~~l~~~m~~~g-~~pdv--tyn~LI~~y~k~G~~eeA~~l  195 (883)
                                           +..+      ...+.+++|...|+...+.+ ..|+.  .|+.+...|...|++++|...
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~  353 (615)
T TIGR00990       274 KPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD  353 (615)
T ss_pred             CcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence                                 0000      12257889999999998875 34443  788888999999999999999


Q ss_pred             HHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCC
Q 002761          196 FLRGAKGGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED  274 (883)
Q Consensus       196 f~~M~~~gi~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~  274 (883)
                      |++..+.  .|+ ..+|..+...+...|++++|...|+...+.. +-+..+|..+...|...|++++|...|++...  .
T Consensus       354 ~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l  428 (615)
T TIGR00990       354 LSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--L  428 (615)
T ss_pred             HHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--c
Confidence            9998874  455 4688899999999999999999999998763 23578899999999999999999999998872  1


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 002761          275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT  353 (883)
Q Consensus       275 gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~  353 (883)
                       .+.+...|..+...|.+.|   +.++|+..|++..+    ..| +...|+.+-..+...|++++|...|+.........
T Consensus       429 -~P~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~----~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~  500 (615)
T TIGR00990       429 -DPDFIFSHIQLGVTQYKEG---SIASSMATFRRCKK----NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET  500 (615)
T ss_pred             -CccCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence             1345777888889999999   66699999999886    345 46778888889999999999999999987643221


Q ss_pred             ccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHH
Q 002761          354 KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIAR  433 (883)
Q Consensus       354 ~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~  433 (883)
                      ...+.  .....++..+..|...|++++|..++++.....   |.+...                         ...+++
T Consensus       501 ~~~~~--~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~---p~~~~a-------------------------~~~la~  550 (615)
T TIGR00990       501 KPMYM--NVLPLINKALALFQWKQDFIEAENLCEKALIID---PECDIA-------------------------VATMAQ  550 (615)
T ss_pred             ccccc--cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC---CCcHHH-------------------------HHHHHH
Confidence            11100  000012333334555799999999999987654   222211                         123556


Q ss_pred             HHHhCCcHHHHHHHHHHh
Q 002761          434 YISEGGLTGERKRWVPRR  451 (883)
Q Consensus       434 ~~~~~G~~~eA~~l~~~m  451 (883)
                      .+...|..++|..+|+..
T Consensus       551 ~~~~~g~~~eAi~~~e~A  568 (615)
T TIGR00990       551 LLLQQGDVDEALKLFERA  568 (615)
T ss_pred             HHHHccCHHHHHHHHHHH
Confidence            666799999999999854

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.49  E-value=2.8e-10  Score=123.81  Aligned_cols=389  Identities=11%  Similarity=0.049  Sum_probs=241.4

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHCC------------------
Q 002761           76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYT---LNGDHEGAMHSLKRELSAG------------------  134 (883)
Q Consensus        76 L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~---~~g~~~~A~~lf~~M~~~G------------------  134 (883)
                      |......|.+..+.-+++.|...|+..+...--.|+..-+   ...-+-.-.+-|-.|...|                  
T Consensus       122 L~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E  201 (625)
T KOG4422|consen  122 LLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFE  201 (625)
T ss_pred             HHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHh
Confidence            3445566888899999999999887666554444433222   1221212223333343222                  


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 002761          135 -VRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD  212 (883)
Q Consensus       135 -i~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn  212 (883)
                       .+-+..||.++|.++|+-...+.|.+++.+........+. ++|.+|.+-+-.    ...++..+|.+..++||..|||
T Consensus       202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfN  277 (625)
T KOG4422|consen  202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFN  277 (625)
T ss_pred             hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHH
Confidence             2346678999999999999999999999988877767777 999988764432    2278899999999999999999


Q ss_pred             HHHHHHHHcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHchh--CCCCCCC----CHH
Q 002761          213 LMIAEDCKAGDHSN----ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV-AFATFENMEY--GEDYMKP----DTE  281 (883)
Q Consensus       213 ~LI~a~~k~g~~ee----A~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~-A~~lf~~M~~--g~~gi~p----d~~  281 (883)
                      +++++.++.|+++.    |.+++.+|++-|+.|...+|..+|.-+++-++..+ |..+..++..  ..+.++|    |..
T Consensus       278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~  357 (625)
T KOG4422|consen  278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK  357 (625)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence            99999999998765    56788899999999999999999999988887643 4444444432  0233444    445


Q ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccc
Q 002761          282 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV---KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN  358 (883)
Q Consensus       282 tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~---~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~  358 (883)
                      -|.+-+..|.+..+.+.+..+..+++.=... .-+.|+.   +-|.-+....|.....+.-...|..|.-.-        
T Consensus       358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~-~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~--------  428 (625)
T KOG4422|consen  358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNW-KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA--------  428 (625)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce--------
Confidence            5666677777777444333333333322110 1123332   235667778888888888888888886321        


Q ss_pred             cCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHH-----HHH
Q 002761          359 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDY-----IAR  433 (883)
Q Consensus       359 ~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~-----l~~  433 (883)
                      |++.+.+-..++.+..-.|+++-.-+++..|+..|..           +++.+...+.  ..+......|+.     +..
T Consensus       429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght-----------~r~~l~eeil--~~L~~~k~hp~tp~r~Ql~~  495 (625)
T KOG4422|consen  429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT-----------FRSDLREEIL--MLLARDKLHPLTPEREQLQV  495 (625)
T ss_pred             ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh-----------hhHHHHHHHH--HHHhcCCCCCCChHHHHHHH
Confidence            2233334567788888889999999999999888752           4443333211  111111111110     000


Q ss_pred             HH-HhCCcHHHHHHHH-HHhcCCCCCCCccceeccchHHHHHHHHHHhhchHHHHHHHHHHhcCCCc
Q 002761          434 YI-SEGGLTGERKRWV-PRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPA  498 (883)
Q Consensus       434 ~~-~~~G~~~eA~~l~-~~m~~~g~~Pd~~~~ty~~li~~~l~~~c~~g~~~~A~~Ll~eM~~~G~~  498 (883)
                      .. ..+-.+.++.+.- .+|++..+.|        +.++.+..-+-|.|+.++|.++|.....+|..
T Consensus       496 ~~ak~aad~~e~~e~~~~R~r~~~~~~--------t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~  554 (625)
T KOG4422|consen  496 AFAKCAADIKEAYESQPIRQRAQDWPA--------TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK  554 (625)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHhccCCh--------hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence            00 0011122222222 2343333333        33456666688999999999999977555544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.48  E-value=2.6e-09  Score=138.13  Aligned_cols=400  Identities=11%  Similarity=0.034  Sum_probs=240.1

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHH------------H
Q 002761           78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLI------------A  144 (883)
Q Consensus        78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~------------~  144 (883)
                      .+...|++++|...|++..+.. +-+...+..|-..|.+.|++++|...|++.....-.. +...+.            .
T Consensus       278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~  356 (1157)
T PRK11447        278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ  356 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence            3667899999999999998764 3478889999999999999999999999987653221 111121            2


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH--------
Q 002761          145 LARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT-DEIYDLMI--------  215 (883)
Q Consensus       145 LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd-~~tyn~LI--------  215 (883)
                      +-..+.+.|++++|...|.++.+........+..|-..|...|++++|.+.|++..+..  |+ ...+..+.        
T Consensus       357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~  434 (1157)
T PRK11447        357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSP  434 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCH
Confidence            23456789999999999999998754333377888999999999999999999988632  33 23333332        


Q ss_pred             ----------------------------------HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 002761          216 ----------------------------------AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV  261 (883)
Q Consensus       216 ----------------------------------~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~  261 (883)
                                                        ..+...|++++|.+.|++..+.... +...+..+...|.+.|++++
T Consensus       435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~  513 (1157)
T PRK11447        435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQ  513 (1157)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence                                              2344567777777777777765322 45566677777888888888


Q ss_pred             HHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHH---------HHHHHHHHHH
Q 002761          262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT---------YALLVECFTK  332 (883)
Q Consensus       262 A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~T---------y~~LI~a~~k  332 (883)
                      |...|+++..  .. +.+...+..+...+...+   +.++|+..++.+..  ....++...         +..+...+..
T Consensus       514 A~~~l~~al~--~~-P~~~~~~~a~al~l~~~~---~~~~Al~~l~~l~~--~~~~~~~~~l~~~l~~~~~l~~a~~l~~  585 (1157)
T PRK11447        514 ADALMRRLAQ--QK-PNDPEQVYAYGLYLSGSD---RDRAALAHLNTLPR--AQWNSNIQELAQRLQSDQVLETANRLRD  585 (1157)
T ss_pred             HHHHHHHHHH--cC-CCCHHHHHHHHHHHHhCC---CHHHHHHHHHhCCc--hhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence            8888887652  11 123333333333445555   44566666665532  111122111         1223445666


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHH
Q 002761          333 YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVS  412 (883)
Q Consensus       333 ~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~  412 (883)
                      .|+.++|..+++.   .+..+          ..+..+...|.+.|+.++|+..|++..+..   |.+...    +..+..
T Consensus       586 ~G~~~eA~~~l~~---~p~~~----------~~~~~La~~~~~~g~~~~A~~~y~~al~~~---P~~~~a----~~~la~  645 (1157)
T PRK11447        586 SGKEAEAEALLRQ---QPPST----------RIDLTLADWAQQRGDYAAARAAYQRVLTRE---PGNADA----RLGLIE  645 (1157)
T ss_pred             CCCHHHHHHHHHh---CCCCc----------hHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHH----HHHHHH
Confidence            6777777766651   11111          124456667777777777777777776653   333321    222211


Q ss_pred             H---------HhhhhHHhhhh----cchHHHHHHHHHhCCcHHHHHHHHHHhcCCC-CCCCccceeccchHHHHHHHHHH
Q 002761          413 S---------WIEPLQEEAEL----GYEIDYIARYISEGGLTGERKRWVPRRGKTP-LDPDAVGFIYSNPMETSFKQRCL  478 (883)
Q Consensus       413 ~---------~~~~~~~m~~~----g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g-~~Pd~~~~ty~~li~~~l~~~c~  478 (883)
                      .         +.+.+......    ......++......|+.++|..+++...... -.|.....  ..+...+...+-.
T Consensus       646 ~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~--a~~~~~~a~~~~~  723 (1157)
T PRK11447        646 VDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMES--ALVLRDAARFEAQ  723 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhh--HHHHHHHHHHHHH
Confidence            1         11111111110    0111235566667999999999999765432 22211000  0000111222445


Q ss_pred             hhchHHHHHHHH-HHhcCCCccccCCChhHHHHH
Q 002761          479 EDGKKYHRKLLR-TLQNEGPAVLGDVSESDYVRV  511 (883)
Q Consensus       479 ~g~~~~A~~Ll~-eM~~~G~~~lls~~~~~~~~v  511 (883)
                      .|+.++|..+++ .|...|+.|...++..++..+
T Consensus       724 ~G~~~~A~~~y~~Al~~~~~~~~~p~~~~~~~~l  757 (1157)
T PRK11447        724 TGQPQQALETYKDAMVASGITPTRPQDNDTFTRL  757 (1157)
T ss_pred             cCCHHHHHHHHHHHHhhcCCCCCCCCCchHHHHH
Confidence            678899999998 556667766443444555543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.47  E-value=8.8e-10  Score=142.49  Aligned_cols=386  Identities=11%  Similarity=0.055  Sum_probs=202.3

Q ss_pred             CCHHHHHHHHHHHHhCCChhhHHHHHHcC--CCCChh---HHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHH
Q 002761           21 TGVVPIRSAMSSPEKKTRRKKQQRRQQKH--GDSLLS---TNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDM   95 (883)
Q Consensus        21 pd~~syn~LI~~~~k~g~~~~A~~M~~~g--v~Pd~~---ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M   95 (883)
                      .+...+..+-..|.+.|++++|...++..  ..|+..   .+..++....   -......-..+.+.|++++|...|++.
T Consensus       301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~---~~~~~~~g~~~~~~g~~~eA~~~~~~A  377 (1157)
T PRK11447        301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR---YWLLIQQGDAALKANNLAQAERLYQQA  377 (1157)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh---HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            35556666666777777777775444431  223221   1222221100   000011112356789999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----
Q 002761           96 IAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD----  171 (883)
Q Consensus        96 ~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~----  171 (883)
                      .+.. +.+...+..+-..|...|++++|.+.|++..... +.+...+..+...+. .++.++|..++..+......    
T Consensus       378 l~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~  454 (1157)
T PRK11447        378 RQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDD  454 (1157)
T ss_pred             HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHH
Confidence            8764 3456778888889999999999999999887642 223444544544443 33455555555443221100    


Q ss_pred             ----hhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 002761          172 ----IRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFH  245 (883)
Q Consensus       172 ----pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~t  245 (883)
                          ... .+..+...|...|++++|...|++..+.  .|+ ...+..+...|.+.|++++|...|+...+..-. +...
T Consensus       455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~  531 (1157)
T PRK11447        455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQ  531 (1157)
T ss_pred             HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHH
Confidence                001 2344455555566666666666655542  232 244445555555666666666666555543211 2222


Q ss_pred             HHH--------------------------------------------HHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHH
Q 002761          246 FNH--------------------------------------------LLSCQATCGIPEVAFATFENMEYGEDYMKPDTE  281 (883)
Q Consensus       246 yn~--------------------------------------------LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~  281 (883)
                      +..                                            +...|...|+.++|..+++.-       +.+..
T Consensus       532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~-------p~~~~  604 (1157)
T PRK11447        532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ-------PPSTR  604 (1157)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC-------CCCch
Confidence            222                                            233344455555555554411       22334


Q ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccC
Q 002761          282 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEG  360 (883)
Q Consensus       282 tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~  360 (883)
                      .+..+...|.+.|   +.++|+..|++..+    ..| +...+..+...|...|++++|...++.........       
T Consensus       605 ~~~~La~~~~~~g---~~~~A~~~y~~al~----~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~-------  670 (1157)
T PRK11447        605 IDLTLADWAQQRG---DYAAARAAYQRVLT----REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS-------  670 (1157)
T ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC-------
Confidence            4455555666666   44466666666654    223 34555556666666666666666666554321111       


Q ss_pred             CCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCc
Q 002761          361 NFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGL  440 (883)
Q Consensus       361 ~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~  440 (883)
                        ..++..+...+.+.|++++|.++|++.....-..|+ ..     .+.                .....+++.....|.
T Consensus       671 --~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~-~~-----~~a----------------~~~~~~a~~~~~~G~  726 (1157)
T PRK11447        671 --LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP-SM-----ESA----------------LVLRDAARFEAQTGQ  726 (1157)
T ss_pred             --hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc-ch-----hhH----------------HHHHHHHHHHHHcCC
Confidence              112344555566666666666666666543311111 00     000                011123566667999


Q ss_pred             HHHHHHHHHH-hcCCCCCCCc
Q 002761          441 TGERKRWVPR-RGKTPLDPDA  460 (883)
Q Consensus       441 ~~eA~~l~~~-m~~~g~~Pd~  460 (883)
                      .++|...+.. |...|+.|..
T Consensus       727 ~~~A~~~y~~Al~~~~~~~~~  747 (1157)
T PRK11447        727 PQQALETYKDAMVASGITPTR  747 (1157)
T ss_pred             HHHHHHHHHHHHhhcCCCCCC
Confidence            9999999884 4455666543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.45  E-value=2.1e-09  Score=130.24  Aligned_cols=364  Identities=16%  Similarity=0.124  Sum_probs=261.0

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 002761           78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLIALARLFGSKGLAT  156 (883)
Q Consensus        78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~~LI~a~~~~g~~~  156 (883)
                      .+.+.|+++.|...|.+....  .|+...|..+-.+|.+.|++++|++.+......  .| +...|..+-.+|...|+++
T Consensus       136 ~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~~~  211 (615)
T TIGR00990       136 KAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGKYA  211 (615)
T ss_pred             HHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHH
Confidence            478899999999999998864  688889999999999999999999999998775  45 4567888999999999999


Q ss_pred             HHHHHHHHHHHcC-CC---------------------------hh-H-HHHHH---------------------------
Q 002761          157 KGLEILAAMEKIN-YD---------------------------IR-Q-AWLIL---------------------------  179 (883)
Q Consensus       157 ~A~~l~~~m~~~g-~~---------------------------pd-v-tyn~L---------------------------  179 (883)
                      +|..-|......+ +.                           |. . .+..+                           
T Consensus       212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (615)
T TIGR00990       212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG  291 (615)
T ss_pred             HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence            9987664433211 00                           00 0 00000                           


Q ss_pred             ---HHHH------HHCCCHHHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHH
Q 002761          180 ---VEEL------VRNKYLEDANKVFLRGAKGG-LRAT-DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMAT-TFHFN  247 (883)
Q Consensus       180 ---I~~y------~k~G~~eeA~~lf~~M~~~g-i~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd-~~tyn  247 (883)
                         +..+      ...+++++|...|+.....+ ..|+ ...|+.+-..+...|++++|...|+.....  .|+ ...|.
T Consensus       292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~  369 (615)
T TIGR00990       292 NGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYI  369 (615)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHH
Confidence               0000      12357889999999988754 2343 467888888889999999999999998875  344 56788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHH
Q 002761          248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALL  326 (883)
Q Consensus       248 ~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~~Ty~~L  326 (883)
                      .+...|...|++++|...|+....  . -+.+...|..+...|...|   +.++|+..|.+..+    +.|+ ...+..+
T Consensus       370 ~la~~~~~~g~~~eA~~~~~~al~--~-~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~kal~----l~P~~~~~~~~l  439 (615)
T TIGR00990       370 KRASMNLELGDPDKAEEDFDKALK--L-NSEDPDIYYHRAQLHFIKG---EFAQAGKDYQKSID----LDPDFIFSHIQL  439 (615)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----cCccCHHHHHHH
Confidence            888999999999999999998772  2 1345788888999999999   66699999999986    4454 5666777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhh
Q 002761          327 VECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRK  406 (883)
Q Consensus       327 I~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~  406 (883)
                      -.++.+.|++++|...|+...+...         ..++.|+.+...|...|++++|+..|++..+..-  ....+..  .
T Consensus       440 a~~~~~~g~~~eA~~~~~~al~~~P---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p--~~~~~~~--~  506 (615)
T TIGR00990       440 GVTQYKEGSIASSMATFRRCKKNFP---------EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK--ETKPMYM--N  506 (615)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCC---------CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--ccccccc--c
Confidence            7889999999999999999876432         1233688899999999999999999999876541  1111110  0


Q ss_pred             HHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHHHHHHhhchHHHH
Q 002761          407 YRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHR  486 (883)
Q Consensus       407 y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~~~c~~g~~~~A~  486 (883)
                      ...++..+                 ...+...|.+++|..+++....  +.|+... .+    ..+...+-+.|+.++|.
T Consensus       507 ~~~l~~~a-----------------~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~-a~----~~la~~~~~~g~~~eAi  562 (615)
T TIGR00990       507 VLPLINKA-----------------LALFQWKQDFIEAENLCEKALI--IDPECDI-AV----ATMAQLLLQQGDVDEAL  562 (615)
T ss_pred             HHHHHHHH-----------------HHHHHHhhhHHHHHHHHHHHHh--cCCCcHH-HH----HHHHHHHHHccCHHHHH
Confidence            00111111                 0111226889999999986433  3465422 11    13444456678899999


Q ss_pred             HHHHHHhc
Q 002761          487 KLLRTLQN  494 (883)
Q Consensus       487 ~Ll~eM~~  494 (883)
                      ++|++..+
T Consensus       563 ~~~e~A~~  570 (615)
T TIGR00990       563 KLFERAAE  570 (615)
T ss_pred             HHHHHHHH
Confidence            99986643

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.30  E-value=3.1e-08  Score=122.84  Aligned_cols=333  Identities=13%  Similarity=0.038  Sum_probs=179.0

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002761           82 NRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI  161 (883)
Q Consensus        82 ~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l  161 (883)
                      .|+++.|..+|++..+.. +.+...+..+...+...|++++|+..+++.... .+.+.. +..+..++...|+.++|...
T Consensus        62 ~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~  138 (765)
T PRK10049         62 LKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRA  138 (765)
T ss_pred             cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHH
Confidence            355555555555554432 223444455555555555555555555555443 112233 55555555555555555555


Q ss_pred             HHHHHHcCCChhHHHHHHHHHHHHCCCHH----------------------------------------------HHHHH
Q 002761          162 LAAMEKINYDIRQAWLILVEELVRNKYLE----------------------------------------------DANKV  195 (883)
Q Consensus       162 ~~~m~~~g~~pdvtyn~LI~~y~k~G~~e----------------------------------------------eA~~l  195 (883)
                      +.++.+........+..+...+.+.|..+                                              +|...
T Consensus       139 l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~  218 (765)
T PRK10049        139 MTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQ  218 (765)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence            55555543332223334444444444444                                              44445


Q ss_pred             HHHHHhC-CCCCCHH-HH----HHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002761          196 FLRGAKG-GLRATDE-IY----DLMIAEDCKAGDHSNALEIAYEMEAAGRM-ATTFHFNHLLSCQATCGIPEVAFATFEN  268 (883)
Q Consensus       196 f~~M~~~-gi~pd~~-ty----n~LI~a~~k~g~~eeA~~lf~~M~~~G~~-Pd~~tyn~LI~~y~k~G~~e~A~~lf~~  268 (883)
                      ++.+.+. .-.|+.. .+    ...+.++...|++++|...|+.+.+.+-. |+..- -.+...|...|++++|..+|+.
T Consensus       219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~  297 (765)
T PRK10049        219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPEKAQSILTE  297 (765)
T ss_pred             HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHH
Confidence            5555432 1112211 11    11133445667778888888887776532 33211 1245577777888888888877


Q ss_pred             chhCCCCC-CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC---------CCCCCH---HHHHHHHHHHHHcCC
Q 002761          269 MEYGEDYM-KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK---------RLQPNV---KTYALLVECFTKYCA  335 (883)
Q Consensus       269 M~~g~~gi-~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~---------gi~Pd~---~Ty~~LI~a~~k~G~  335 (883)
                      +....... ......+..+..++...|   +.++|..++..+.....         .-.|+.   ..+..+...+...|+
T Consensus       298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g---~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~  374 (765)
T PRK10049        298 LFYHPETIADLSDEELADLFYSLLESE---NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND  374 (765)
T ss_pred             HhhcCCCCCCCChHHHHHHHHHHHhcc---cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC
Confidence            65211110 011344555666777777   55577777777765100         011231   233445566777788


Q ss_pred             HHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHh
Q 002761          336 VTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI  415 (883)
Q Consensus       336 ~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~  415 (883)
                      +++|+.+++.+........         ..+..+...+...|++++|++.+++.....   |.+..+    +.       
T Consensus       375 ~~eA~~~l~~al~~~P~n~---------~l~~~lA~l~~~~g~~~~A~~~l~~al~l~---Pd~~~l----~~-------  431 (765)
T PRK10049        375 LPQAEMRARELAYNAPGNQ---------GLRIDYASVLQARGWPRAAENELKKAEVLE---PRNINL----EV-------  431 (765)
T ss_pred             HHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCChHH----HH-------
Confidence            8888888877765332221         145677777778888888888888776654   443321    11       


Q ss_pred             hhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCc
Q 002761          416 EPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDA  460 (883)
Q Consensus       416 ~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~  460 (883)
                                    ..+......|..++|+.+++.+.+  ..|+.
T Consensus       432 --------------~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~  460 (765)
T PRK10049        432 --------------EQAWTALDLQEWRQMDVLTDDVVA--REPQD  460 (765)
T ss_pred             --------------HHHHHHHHhCCHHHHHHHHHHHHH--hCCCC
Confidence                          122334447899999999986644  44554

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.26  E-value=2.3e-09  Score=121.16  Aligned_cols=346  Identities=11%  Similarity=0.092  Sum_probs=270.2

Q ss_pred             CCHHHHHHHHHHHHhCCChhhHHHHHHcC--CCCCh-hHHHHHHHHHHccCChHHHHHHH-------------------H
Q 002761           21 TGVVPIRSAMSSPEKKTRRKKQQRRQQKH--GDSLL-STNGSVVSAAEQGLRLIFMEELM-------------------Q   78 (883)
Q Consensus        21 pd~~syn~LI~~~~k~g~~~~A~~M~~~g--v~Pd~-~ty~~ll~a~~~~~~~~~~~~L~-------------------~   78 (883)
                      --.-+|..+-+.+-..|.+++|....+.+  .+|+- -.|..+-.++...++...+...+                   -
T Consensus       114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL  193 (966)
T KOG4626|consen  114 QGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL  193 (966)
T ss_pred             hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence            34567888999999999999996666653  44533 33555656666665543332211                   1


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPG-PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL-HETLIALARLFGSKGLAT  156 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G~~pd-~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd-~~ty~~LI~a~~~~g~~~  156 (883)
                      +...|++.+|..-+-+..+.  .|. .+.|+.|-..+-..|++-.|+.-|.+...  +.|+ ...|..|-..|...+.++
T Consensus       194 lka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d  269 (966)
T KOG4626|consen  194 LKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFD  269 (966)
T ss_pred             HHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcch
Confidence            33457777777777666554  343 46799999999999999999999998765  4565 457888889999999999


Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002761          157 KGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYEME  235 (883)
Q Consensus       157 ~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~  235 (883)
                      .|...+.+........-++|..|-..|-..|.++-|...|++..+  +.|+- ..||.|-.++-..|++.+|.+.+....
T Consensus       270 ~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL  347 (966)
T KOG4626|consen  270 RAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL  347 (966)
T ss_pred             HHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence            999999887765433334888888899999999999999999887  45765 799999999999999999999999888


Q ss_pred             HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC
Q 002761          236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK  314 (883)
Q Consensus       236 ~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd-~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~  314 (883)
                      ... .-.....|.|-+.|...|.+++|.++|....+    +.|. ...+|.|...|-+.|   ...+|+..+++.++   
T Consensus       348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~----v~p~~aaa~nNLa~i~kqqg---nl~~Ai~~Ykealr---  416 (966)
T KOG4626|consen  348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE----VFPEFAAAHNNLASIYKQQG---NLDDAIMCYKEALR---  416 (966)
T ss_pred             HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh----hChhhhhhhhhHHHHHHhcc---cHHHHHHHHHHHHh---
Confidence            753 22456778899999999999999999998662    3444 467899999999999   55599999999875   


Q ss_pred             CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761          315 RLQPNV-KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN  393 (883)
Q Consensus       315 gi~Pd~-~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~G  393 (883)
                       ++|+- ..|+.+-..|-..|+++.|.+.+......  .|+..       +..+.|-..|-.+|++.+|+.-|++-+...
T Consensus       417 -I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~A-------eAhsNLasi~kDsGni~~AI~sY~~aLklk  486 (966)
T KOG4626|consen  417 -IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFA-------EAHSNLASIYKDSGNIPEAIQSYRTALKLK  486 (966)
T ss_pred             -cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHH-------HHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence             88984 57888888999999999999999887653  33332       246889999999999999999999987664

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.23  E-value=9e-09  Score=116.43  Aligned_cols=359  Identities=14%  Similarity=0.098  Sum_probs=253.7

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002761           54 LSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSA  133 (883)
Q Consensus        54 ~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~  133 (883)
                      ..+|+.+-+.+...               |+++.|+.+++.+.+.. +-.+..|..+-.++...|+.+.|...|.+..+ 
T Consensus       116 ae~ysn~aN~~ker---------------g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq-  178 (966)
T KOG4626|consen  116 AEAYSNLANILKER---------------GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ-  178 (966)
T ss_pred             HHHHHHHHHHHHHh---------------chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh-
Confidence            34677777776555               67799999999998764 33577899999999999999999999988765 


Q ss_pred             CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHH
Q 002761          134 GVRPLHETLIALA-RLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIY  211 (883)
Q Consensus       134 Gi~Pd~~ty~~LI-~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~ty  211 (883)
                       +.|+.+...+-+ ..+-..|++.+|...+-+.++.....-++|+.|-..+-..|++..|..-|.+...  +.|+- -.|
T Consensus       179 -lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAY  255 (966)
T KOG4626|consen  179 -LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAY  255 (966)
T ss_pred             -cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHH
Confidence             567666544333 3333468899999988888876544445899999899999999999999998876  55664 678


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCC-HHHHHHHHHH
Q 002761          212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMAT-TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQA  289 (883)
Q Consensus       212 n~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd-~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd-~~tyn~LI~a  289 (883)
                      -.|-..|...+.+++|...+......  .|+ .++|..|-..|-..|.++.|...+++...    +.|+ ...||.|..+
T Consensus       256 iNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~----~~P~F~~Ay~NlanA  329 (966)
T KOG4626|consen  256 INLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE----LQPNFPDAYNNLANA  329 (966)
T ss_pred             hhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHh----cCCCchHHHhHHHHH
Confidence            88888899999999998888776654  444 56677777788888999999988887662    2444 4678888889


Q ss_pred             HHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHH
Q 002761          290 YTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL  368 (883)
Q Consensus       290 y~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~  368 (883)
                      +-..|   ++.+|.+.+.+...    +.|+ .-..+.|-..|...|.+++|..+|.........-.         ...|.
T Consensus       330 Lkd~G---~V~ea~~cYnkaL~----l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a---------aa~nN  393 (966)
T KOG4626|consen  330 LKDKG---SVTEAVDCYNKALR----LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA---------AAHNN  393 (966)
T ss_pred             HHhcc---chHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh---------hhhhh
Confidence            88888   67788888888875    5565 35667788888888999999988888765432222         24578


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcce-ehh---hhHHH--HHHHHhhhhHHhh----hhcchHHHHHHHHHhC
Q 002761          369 YLRALCREGRIIELLEALEAMAKDNQPVPPRAM-ILS---RKYRT--LVSSWIEPLQEEA----ELGYEIDYIARYISEG  438 (883)
Q Consensus       369 LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~-~~~---~~y~~--Ll~~~~~~~~~m~----~~g~~~D~l~~~~~~~  438 (883)
                      |-..|-+.|++++|+.-|++..+-    .|+.. .++   ..|..  -+++++..+..-.    .+.-...-|+.....+
T Consensus       394 La~i~kqqgnl~~Ai~~YkealrI----~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs  469 (966)
T KOG4626|consen  394 LASIYKQQGNLDDAIMCYKEALRI----KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDS  469 (966)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhc----CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc
Confidence            888888899999998888887543    33321 111   11221  1222222211100    1111122366677889


Q ss_pred             CcHHHHHHHHHHhcCCCCCCCc
Q 002761          439 GLTGERKRWVPRRGKTPLDPDA  460 (883)
Q Consensus       439 G~~~eA~~l~~~m~~~g~~Pd~  460 (883)
                      |.+.+|..-++.  ...++||.
T Consensus       470 Gni~~AI~sY~~--aLklkPDf  489 (966)
T KOG4626|consen  470 GNIPEAIQSYRT--ALKLKPDF  489 (966)
T ss_pred             CCcHHHHHHHHH--HHccCCCC
Confidence            999999998873  23455554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.23  E-value=1.7e-07  Score=116.39  Aligned_cols=340  Identities=9%  Similarity=0.006  Sum_probs=223.3

Q ss_pred             CHHHHHHHHHHHHhCCChhhHHHHHHc--CCCCChhH-HHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 002761           22 GVVPIRSAMSSPEKKTRRKKQQRRQQK--HGDSLLST-NGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAA   98 (883)
Q Consensus        22 d~~syn~LI~~~~k~g~~~~A~~M~~~--gv~Pd~~t-y~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~   98 (883)
                      +...+..+...+.+.|++++|...++.  ...|+... +..+.               ..+...|++++|...+++..+.
T Consensus        48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la---------------~~l~~~g~~~eA~~~l~~~l~~  112 (765)
T PRK10049         48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI---------------LTLADAGQYDEALVKAKQLVSG  112 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH---------------HHHHHCCCHHHHHHHHHHHHHh
Confidence            344466666666666666666555543  12233221 11111               1345667778888888887765


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH---------------------
Q 002761           99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL-HETLIALARLFGSKGLAT---------------------  156 (883)
Q Consensus        99 G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd-~~ty~~LI~a~~~~g~~~---------------------  156 (883)
                      . +.+.. |..+..++...|++++|+..+++....  .|+ ...+..+..++...+..+                     
T Consensus       113 ~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~  188 (765)
T PRK10049        113 A-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEA  188 (765)
T ss_pred             C-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHH
Confidence            2 33444 777777777788888888888777764  333 333344444554444444                     


Q ss_pred             -------------------------HHHHHHHHHHHc-CCChhH------HHHHHHHHHHHCCCHHHHHHHHHHHHhCCC
Q 002761          157 -------------------------KGLEILAAMEKI-NYDIRQ------AWLILVEELVRNKYLEDANKVFLRGAKGGL  204 (883)
Q Consensus       157 -------------------------~A~~l~~~m~~~-g~~pdv------tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi  204 (883)
                                               .|...++.+.+. ...|+.      .....+..+...|++++|...|+.+.+.+-
T Consensus       189 ~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~  268 (765)
T PRK10049        189 DAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQ  268 (765)
T ss_pred             HHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC
Confidence                                     344444455432 112211      111113455677999999999999998753


Q ss_pred             C-CCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCC-----
Q 002761          205 R-ATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA---TTFHFNHLLSCQATCGIPEVAFATFENMEYGED-----  274 (883)
Q Consensus       205 ~-pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~P---d~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~-----  274 (883)
                      . |+. ..|  +...|...|++++|..+|+.+....-..   ....+..|..++...|++++|..+++.+.....     
T Consensus       269 ~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~  346 (765)
T PRK10049        269 IIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRL  346 (765)
T ss_pred             CCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEee
Confidence            2 332 232  5678999999999999999987653211   134566777789999999999999999883100     


Q ss_pred             ----CCCCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002761          275 ----YMKPD---TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ  347 (883)
Q Consensus       275 ----gi~pd---~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~  347 (883)
                          .-.|+   ...+..+...+...|   +.++|+++|+++..   ...-+...+..+...+...|++++|+..++...
T Consensus       347 ~~~~~~~p~~~~~~a~~~~a~~l~~~g---~~~eA~~~l~~al~---~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al  420 (765)
T PRK10049        347 YGSPTSIPNDDWLQGQSLLSQVAKYSN---DLPQAEMRARELAY---NAPGNQGLRIDYASVLQARGWPRAAENELKKAE  420 (765)
T ss_pred             cCCCCCCCCchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence                11233   234566777888999   66699999999986   233356677888889999999999999999998


Q ss_pred             hCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcc
Q 002761          348 NYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA  400 (883)
Q Consensus       348 ~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~  400 (883)
                      ........         .+-.+...+.+.|++++|..+++++.+..   |.+.
T Consensus       421 ~l~Pd~~~---------l~~~~a~~al~~~~~~~A~~~~~~ll~~~---Pd~~  461 (765)
T PRK10049        421 VLEPRNIN---------LEVEQAWTALDLQEWRQMDVLTDDVVARE---PQDP  461 (765)
T ss_pred             hhCCCChH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCCH
Confidence            75432211         34566778999999999999999998865   5554

>PF13041 PPR_2: PPR repeat family

Probab=99.21  E-value=2.4e-11  Score=96.70  Aligned_cols=50  Identities=26%  Similarity=0.454  Sum_probs=33.7

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 002761          206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT  255 (883)
Q Consensus       206 pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k  255 (883)
                      ||+++||+||++|++.|++++|.++|++|.+.|+.||..|||+||++|||
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            56666666666666666666666666666666666666666666666654

>PF13041 PPR_2: PPR repeat family

Probab=99.21  E-value=3.3e-11  Score=95.90  Aligned_cols=50  Identities=22%  Similarity=0.320  Sum_probs=48.2

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002761          102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS  151 (883)
Q Consensus       102 pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~  151 (883)
                      ||+++||+||++|++.|++++|+++|++|.+.|+.||..||+++|++||+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            89999999999999999999999999999999999999999999999985

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.20  E-value=3e-07  Score=113.24  Aligned_cols=369  Identities=11%  Similarity=0.022  Sum_probs=216.6

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002761           77 MQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT  156 (883)
Q Consensus        77 ~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~  156 (883)
                      ..+...|+.+.|+..+++..... .......-.+...|...|++++|+++|+++...... |...+..++..+...++.+
T Consensus        76 ~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~  153 (822)
T PRK14574         76 QIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGG  153 (822)
T ss_pred             HHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHH
Confidence            34455566666666666655100 111122222233555556666666666666554221 2444455566666666666


Q ss_pred             HHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002761          157 KGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEM  234 (883)
Q Consensus       157 ~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M  234 (883)
                      +|++.+..+.+..  |+. .+-.++..+...++..+|+..++++.+..  |+ ...+..++.++.+.|-...|.++..+-
T Consensus       154 eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~  229 (822)
T PRK14574        154 VVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKEN  229 (822)
T ss_pred             HHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence            6666666665542  223 34333333333444444666666666532  33 344455555555555554444433311


Q ss_pred             H--------------------HcC-----------------------------CCCCH-H----HHHHHHHHHHHcCCHH
Q 002761          235 E--------------------AAG-----------------------------RMATT-F----HFNHLLSCQATCGIPE  260 (883)
Q Consensus       235 ~--------------------~~G-----------------------------~~Pd~-~----tyn~LI~~y~k~G~~e  260 (883)
                      .                    +.+                             -.|.. .    ..--.+-++.+.|++.
T Consensus       230 p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~  309 (822)
T PRK14574        230 PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTA  309 (822)
T ss_pred             ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHH
Confidence            1                    000                             00110 0    1112334567788999


Q ss_pred             HHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCC----CCCCHHHHHHHHHHHHHcCCH
Q 002761          261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR----LQPNVKTYALLVECFTKYCAV  336 (883)
Q Consensus       261 ~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~g----i~Pd~~Ty~~LI~a~~k~G~~  336 (883)
                      ++.+.|+.|.  ..+.+--..+--++.++|...+   +.++|..+|...... .+    ..++......|..+|...+++
T Consensus       310 ~vi~~y~~l~--~~~~~~P~y~~~a~adayl~~~---~P~kA~~l~~~~~~~-~~~~~~~~~~~~~~~~L~yA~ld~e~~  383 (822)
T PRK14574        310 DLIKEYEAME--AEGYKMPDYARRWAASAYIDRR---LPEKAAPILSSLYYS-DGKTFRNSDDLLDADDLYYSLNESEQL  383 (822)
T ss_pred             HHHHHHHHhh--hcCCCCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHhhc-cccccCCCcchHHHHHHHHHHHhcccH
Confidence            9999999999  6665544457778999999999   555999999998763 22    122344467899999999999


Q ss_pred             HHHHHHHHHHHhCCCCCccccccC-----CCCc---HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHH
Q 002761          337 TEAIRHFRALQNYEGGTKVLHNEG-----NFGD---PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYR  408 (883)
Q Consensus       337 eeA~~lf~~M~~~~~~~~~~~~~~-----~~~d---tYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~  408 (883)
                      ++|..+++.+.+..  |.....++     +.++   .+..++..+.-.|++.+|.+.++++....   |-|.-+      
T Consensus       384 ~~A~~~l~~~~~~~--p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a---P~n~~l------  452 (822)
T PRK14574        384 DKAYQFAVNYSEQT--PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA---PANQNL------  452 (822)
T ss_pred             HHHHHHHHHHHhcC--CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHH------
Confidence            99999999998632  21111111     1222   56677888999999999999999997775   555422      


Q ss_pred             HHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHHHHHHhhchHHHHHH
Q 002761          409 TLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKL  488 (883)
Q Consensus       409 ~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~~~c~~g~~~~A~~L  488 (883)
                        ..                 .++......|...+|+.+++...  .+.|+.... ..    +....+-..+.+..|.++
T Consensus       453 --~~-----------------~~A~v~~~Rg~p~~A~~~~k~a~--~l~P~~~~~-~~----~~~~~al~l~e~~~A~~~  506 (822)
T PRK14574        453 --RI-----------------ALASIYLARDLPRKAEQELKAVE--SLAPRSLIL-ER----AQAETAMALQEWHQMELL  506 (822)
T ss_pred             --HH-----------------HHHHHHHhcCCHHHHHHHHHHHh--hhCCccHHH-HH----HHHHHHHhhhhHHHHHHH
Confidence              11                 12233334899999999997443  347764221 11    333334455778888888


Q ss_pred             HHHHhc
Q 002761          489 LRTLQN  494 (883)
Q Consensus       489 l~eM~~  494 (883)
                      .+....
T Consensus       507 ~~~l~~  512 (822)
T PRK14574        507 TDDVIS  512 (822)
T ss_pred             HHHHHh
Confidence            876643

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.12  E-value=3.1e-07  Score=115.38  Aligned_cols=334  Identities=10%  Similarity=-0.020  Sum_probs=239.3

Q ss_pred             HHHhCCChhhHHHHHHcCCC------CChhHHHHHHHHHHccCChHHHHHHHHHHh----------cCChHHHHHHHHHH
Q 002761           32 SPEKKTRRKKQQRRQQKHGD------SLLSTNGSVVSAAEQGLRLIFMEELMQHAR----------NRDAPRVNDVIYDM   95 (883)
Q Consensus        32 ~~~k~g~~~~A~~M~~~gv~------Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k----------~G~~~~A~~lf~~M   95 (883)
                      ...+.|+.++|.+++++...      ++....+-++..+.+...+.....+..+.+          .|+...+....+..
T Consensus       385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (987)
T PRK09782        385 QLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI  464 (987)
T ss_pred             HHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence            44678889999888877443      223344467788888777555555544433          45554444444444


Q ss_pred             HHC-CC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 002761           96 IAA-GL-SP--GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD  171 (883)
Q Consensus        96 ~~~-G~-~p--d~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~  171 (883)
                      ... +. ++  +...|..+-.++.. +++.+|+..|.+....  .|+......+..++...|++++|...|+++......
T Consensus       465 ~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~  541 (987)
T PRK09782        465 VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMS  541 (987)
T ss_pred             HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence            332 12 34  67788888887776 8999999988777654  477655445555667899999999999998665222


Q ss_pred             hhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002761          172 IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL  250 (883)
Q Consensus       172 pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI  250 (883)
                       +..+..+...+.+.|++++|...|+...+..  |+. ..+..+...+...|++++|...|++..+.  .|+...|..+-
T Consensus       542 -~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA  616 (987)
T PRK09782        542 -NEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARA  616 (987)
T ss_pred             -cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence             2356677788999999999999999998754  433 33444444555669999999999999875  46788899999


Q ss_pred             HHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHH
Q 002761          251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVEC  329 (883)
Q Consensus       251 ~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~~Ty~~LI~a  329 (883)
                      ..+.+.|+.++|...|++...  . -+.+...++.+-..+...|   +.++|+..|.+..+    ..|+ ...+..+-.+
T Consensus       617 ~~l~~lG~~deA~~~l~~AL~--l-~Pd~~~a~~nLG~aL~~~G---~~eeAi~~l~~AL~----l~P~~~~a~~nLA~a  686 (987)
T PRK09782        617 TIYRQRHNVPAAVSDLRAALE--L-EPNNSNYQAALGYALWDSG---DIAQSREMLERAHK----GLPDDPALIRQLAYV  686 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHH
Confidence            999999999999999998873  1 1345677888888999999   66699999999987    4564 5677888889


Q ss_pred             HHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 002761          330 FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD  392 (883)
Q Consensus       330 ~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~  392 (883)
                      +...|++++|...|+...........+         .-..-....+..+++.|.+-+.+-...
T Consensus       687 l~~lGd~~eA~~~l~~Al~l~P~~a~i---------~~~~g~~~~~~~~~~~a~~~~~r~~~~  740 (987)
T PRK09782        687 NQRLDDMAATQHYARLVIDDIDNQALI---------TPLTPEQNQQRFNFRRLHEEVGRRWTF  740 (987)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCchh---------hhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999998654333222         223344555666677777666655433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.07  E-value=1.7e-06  Score=106.73  Aligned_cols=343  Identities=11%  Similarity=0.041  Sum_probs=239.4

Q ss_pred             HHhCCChhhHHHHHHc--CCCCChh--HHHHHHHHHHccCChHHHHH-------------------HHHHHhcCChHHHH
Q 002761           33 PEKKTRRKKQQRRQQK--HGDSLLS--TNGSVVSAAEQGLRLIFMEE-------------------LMQHARNRDAPRVN   89 (883)
Q Consensus        33 ~~k~g~~~~A~~M~~~--gv~Pd~~--ty~~ll~a~~~~~~~~~~~~-------------------L~~~~k~G~~~~A~   89 (883)
                      ..+.|++..|...++.  ...|+..  .+ .++..+...+....+..                   ...+...|+++.|.
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai  122 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL  122 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            4567778888555554  3445531  22 44444444444332222                   11466779999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002761           90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN  169 (883)
Q Consensus        90 ~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g  169 (883)
                      .+|+++.+.. +-+...+..++..|...++.++|++.+.++...  .|+...+-.++..+...++..+|.+.++++.+..
T Consensus       123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~  199 (822)
T PRK14574        123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA  199 (822)
T ss_pred             HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence            9999999875 345677778899999999999999999998764  6676666555444444566666999999999876


Q ss_pred             CChhHHHHHHHHHHHHCCCHHHHHHHHHH------------------------------------------------HHh
Q 002761          170 YDIRQAWLILVEELVRNKYLEDANKVFLR------------------------------------------------GAK  201 (883)
Q Consensus       170 ~~pdvtyn~LI~~y~k~G~~eeA~~lf~~------------------------------------------------M~~  201 (883)
                      ......+.-++..+.+.|-...|.++..+                                                +..
T Consensus       200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~  279 (822)
T PRK14574        200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT  279 (822)
T ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence            43323566666666666665555544432                                                221


Q ss_pred             -CCCCCCH-H----HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCC
Q 002761          202 -GGLRATD-E----IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY  275 (883)
Q Consensus       202 -~gi~pd~-~----tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~g  275 (883)
                       .+-.|.. .    ..-=.+-++...|++.++.+.|+.|...|.+.-..+--++.++|...+..++|..+|..+.. ..+
T Consensus       280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~-~~~  358 (822)
T PRK14574        280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY-SDG  358 (822)
T ss_pred             hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh-ccc
Confidence             0111221 1    12234556788999999999999999999775666888999999999999999999999863 221


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC-----------CCCCCHHHH-HHHHHHHHHcCCHHHH
Q 002761          276 ----MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK-----------RLQPNVKTY-ALLVECFTKYCAVTEA  339 (883)
Q Consensus       276 ----i~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~-----------gi~Pd~~Ty-~~LI~a~~k~G~~eeA  339 (883)
                          ..++......|..+|...+   +.++|..+++.+.+...           ...||-..+ ..++..+.-.|++.+|
T Consensus       359 ~~~~~~~~~~~~~~L~yA~ld~e---~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A  435 (822)
T PRK14574        359 KTFRNSDDLLDADDLYYSLNESE---QLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA  435 (822)
T ss_pred             cccCCCcchHHHHHHHHHHHhcc---cHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence                2335555788999999999   66699999999986201           122333333 4456788999999999


Q ss_pred             HHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 002761          340 IRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD  392 (883)
Q Consensus       340 ~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~  392 (883)
                      ++.++.+....+.+.-         ....+-+.+...|++.+|...++.....
T Consensus       436 e~~le~l~~~aP~n~~---------l~~~~A~v~~~Rg~p~~A~~~~k~a~~l  479 (822)
T PRK14574        436 QKKLEDLSSTAPANQN---------LRIALASIYLARDLPRKAEQELKAVESL  479 (822)
T ss_pred             HHHHHHHHHhCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence            9999999864332221         4678899999999999999999776554

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.06  E-value=3.6e-08  Score=115.77  Aligned_cols=261  Identities=11%  Similarity=0.038  Sum_probs=174.2

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002761           90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN  169 (883)
Q Consensus        90 ~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g  169 (883)
                      .++-.|...|+.||.+||..+|.-||..|+++.|- +|.-|.-..+..+...|+.++.+....++.+.+.          
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence            45566777888888888888888888888888887 8888887777778888888888888888877665          


Q ss_pred             CChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-HcCCCCCHHHHH
Q 002761          170 YDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME-AAGRMATTFHFN  247 (883)
Q Consensus       170 ~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~-~~G~~Pd~~tyn  247 (883)
                       .|.. +|+.|..+|...|++.-    |+...+        -.-.++..+..+|-......++..+. ..+.-||..   
T Consensus        80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---  143 (1088)
T KOG4318|consen   80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---  143 (1088)
T ss_pred             -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---
Confidence             4444 88888888888888766    332222        12234455566665555555544432 223444544   


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHH
Q 002761          248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV  327 (883)
Q Consensus       248 ~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI  327 (883)
                      ++|.-..-.|.++.+.+++..|.. .....|-.+    .|+-+.....     ...++...... ..+ .|+..+|.+++
T Consensus       144 n~illlv~eglwaqllkll~~~Pv-sa~~~p~~v----fLrqnv~~nt-----pvekLl~~cks-l~e-~~~s~~l~a~l  211 (1088)
T KOG4318|consen  144 NAILLLVLEGLWAQLLKLLAKVPV-SAWNAPFQV----FLRQNVVDNT-----PVEKLLNMCKS-LVE-APTSETLHAVL  211 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCc-ccccchHHH----HHHHhccCCc-----hHHHHHHHHHH-hhc-CCChHHHHHHH
Confidence            344445667788888888887773 222223333    2443333331     22233333332 134 69999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcce
Q 002761          328 ECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAM  401 (883)
Q Consensus       328 ~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~  401 (883)
                      .+-.-+|+++.|..++.+|++.|.......        |-.||-+   .|...-+..++.-|.+.|+. |...|
T Consensus       212 ~~alaag~~d~Ak~ll~emke~gfpir~Hy--------FwpLl~g---~~~~q~~e~vlrgmqe~gv~-p~seT  273 (1088)
T KOG4318|consen  212 KRALAAGDVDGAKNLLYEMKEKGFPIRAHY--------FWPLLLG---INAAQVFEFVLRGMQEKGVQ-PGSET  273 (1088)
T ss_pred             HHHHhcCchhhHHHHHHHHHHcCCCccccc--------chhhhhc---CccchHHHHHHHHHHHhcCC-CCcch
Confidence            999999999999999999998876543321        2234433   88889999999999999984 44433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.06  E-value=2.9e-07  Score=105.64  Aligned_cols=284  Identities=10%  Similarity=0.021  Sum_probs=211.1

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHH
Q 002761           80 ARNRDAPRVNDVIYDMIAAGLSPGPRS-FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI--ALARLFGSKGLAT  156 (883)
Q Consensus        80 ~k~G~~~~A~~lf~~M~~~G~~pd~~t-yn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~--~LI~a~~~~g~~~  156 (883)
                      .-.|+++.|.+.+....+..  +++.. |-....+..+.|+++.|...|.++.+  ..|+...+.  .....+...|+++
T Consensus        95 ~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~  170 (398)
T PRK10747         95 LAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENH  170 (398)
T ss_pred             HhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHH
Confidence            34699999998888776542  22333 33334444788999999999999976  456654443  3466888999999


Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCChHHHHH
Q 002761          157 KGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-------EIYDLMIAEDCKAGDHSNALE  229 (883)
Q Consensus       157 ~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-------~tyn~LI~a~~k~g~~eeA~~  229 (883)
                      .|...++.+.+.......+...+...|.+.|++++|..++..+.+.+..++.       .+|..++.......+.+...+
T Consensus       171 ~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~  250 (398)
T PRK10747        171 AARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR  250 (398)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            9999999999887544448899999999999999999999999987655332       234444554445555566666


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHh
Q 002761          230 IAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM  309 (883)
Q Consensus       230 lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M  309 (883)
                      +++.+.+. .+.+......+...+...|+.++|..++++..  +  ..||..  -.++.+.+..+   +..++++..+..
T Consensus       251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l--~--~~~~~~--l~~l~~~l~~~---~~~~al~~~e~~  320 (398)
T PRK10747        251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGL--K--RQYDER--LVLLIPRLKTN---NPEQLEKVLRQQ  320 (398)
T ss_pred             HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--h--cCCCHH--HHHHHhhccCC---ChHHHHHHHHHH
Confidence            66665443 34577888999999999999999999999887  3  244442  12445555567   566999999998


Q ss_pred             HhccCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHH
Q 002761          310 VEDHKRLQPNV-KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA  388 (883)
Q Consensus       310 ~~~~~gi~Pd~-~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~  388 (883)
                      .+    -.||. ..+.++-..|.+.+++++|...|+...+....+          .+|-.|...+.+.|+.++|.+++++
T Consensus       321 lk----~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~----------~~~~~La~~~~~~g~~~~A~~~~~~  386 (398)
T PRK10747        321 IK----QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA----------YDYAWLADALDRLHKPEEAAAMRRD  386 (398)
T ss_pred             Hh----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            86    34654 456777889999999999999999998743221          1467899999999999999999997


Q ss_pred             Hhh
Q 002761          389 MAK  391 (883)
Q Consensus       389 M~~  391 (883)
                      -..
T Consensus       387 ~l~  389 (398)
T PRK10747        387 GLM  389 (398)
T ss_pred             HHh
Confidence            643

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.02  E-value=1.5e-05  Score=95.41  Aligned_cols=157  Identities=17%  Similarity=0.183  Sum_probs=79.4

Q ss_pred             HHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCH
Q 002761          300 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI  379 (883)
Q Consensus       300 ~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~  379 (883)
                      ++|+++|.+.++   .-.-|...-|.+--.++..|++.+|..+|..+++...         .+.++|-.+-+.|...|++
T Consensus       629 ~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~---------~~~dv~lNlah~~~e~~qy  696 (1018)
T KOG2002|consen  629 EKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS---------DFEDVWLNLAHCYVEQGQY  696 (1018)
T ss_pred             HHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh---------hCCceeeeHHHHHHHHHHH
Confidence            345555555543   1122344444444455555555555555555554211         1122333455555555555


Q ss_pred             HHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCC
Q 002761          380 IELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPD  459 (883)
Q Consensus       380 ~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd  459 (883)
                      ..|+++|+.....-.+ ..+.                         -+...|+++....|.+.+|....-  ...-+.|.
T Consensus       697 ~~AIqmYe~~lkkf~~-~~~~-------------------------~vl~~Lara~y~~~~~~eak~~ll--~a~~~~p~  748 (1018)
T KOG2002|consen  697 RLAIQMYENCLKKFYK-KNRS-------------------------EVLHYLARAWYEAGKLQEAKEALL--KARHLAPS  748 (1018)
T ss_pred             HHHHHHHHHHHHHhcc-cCCH-------------------------HHHHHHHHHHHHhhhHHHHHHHHH--HHHHhCCc
Confidence            5555555554433321 1111                         124467788888999999988775  33445565


Q ss_pred             ccceeccchHHHHHHHHHHh----------------hchHHHHHHHHHHhcCCCc
Q 002761          460 AVGFIYSNPMETSFKQRCLE----------------DGKKYHRKLLRTLQNEGPA  498 (883)
Q Consensus       460 ~~~~ty~~li~~~l~~~c~~----------------g~~~~A~~Ll~eM~~~G~~  498 (883)
                      ..+..||..+  ++...|..                +..+.|.++|.+|...+-.
T Consensus       749 ~~~v~FN~a~--v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~  801 (1018)
T KOG2002|consen  749 NTSVKFNLAL--VLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK  801 (1018)
T ss_pred             cchHHhHHHH--HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4444333222  12222322                2346888888888655544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.99  E-value=4.4e-06  Score=105.14  Aligned_cols=361  Identities=13%  Similarity=0.046  Sum_probs=210.7

Q ss_pred             HHHHHHHhCCChhhHHHHHHcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 002761           28 SAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSF  107 (883)
Q Consensus        28 ~LI~~~~k~g~~~~A~~M~~~gv~Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~ty  107 (883)
                      .++.-+.+++.+.-+.+++.  +.|-...  -.++...             ....+...++...+..|.+.. +-+....
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~r~~~-------------~~~~~~~~~~~~~~~~~y~~~-~~~~~~l  379 (987)
T PRK09782        318 ATLPVLLKEGQYDAAQKLLA--TLPANEM--LEERYAV-------------SVATRNKAEALRLARLLYQQE-PANLTRL  379 (987)
T ss_pred             HHHHHHHhccHHHHHHHHhc--CCCcchH--HHHHHhh-------------ccccCchhHHHHHHHHHHhcC-CCCHHHH
Confidence            34667777777775555532  4443331  1222211             112244455555555555431 1122222


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCC---HHHHHHH---------------------
Q 002761          108 HGLVVAYTLNGDHEGAMHSLKRELSA-G-VRPLHETLIALARLFGSKGL---ATKGLEI---------------------  161 (883)
Q Consensus       108 n~LI~a~~~~g~~~~A~~lf~~M~~~-G-i~Pd~~ty~~LI~a~~~~g~---~~~A~~l---------------------  161 (883)
                      -.+--...+.|+.++|..+|+..... + -.++....+-++..|.+.+.   ...+..+                     
T Consensus       380 ~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  459 (987)
T PRK09782        380 DQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIAD  459 (987)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhh
Confidence            22333334566666666666665431 1 12233334455555555544   2222222                     


Q ss_pred             -HHHHHHc-CCCh---hH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002761          162 -LAAMEKI-NYDI---RQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME  235 (883)
Q Consensus       162 -~~~m~~~-g~~p---dv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~  235 (883)
                       .....+. +..|   +. .|..+-.++.. |+.++|...|.+....  .|+......+...+...|++++|...|+.+.
T Consensus       460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~  536 (987)
T PRK09782        460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKIS  536 (987)
T ss_pred             hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence             1111111 1112   23 66777777766 7888888877776653  3665443344444567888888888888875


Q ss_pred             HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCC
Q 002761          236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR  315 (883)
Q Consensus       236 ~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~g  315 (883)
                      ..  .|+...+..+...+.+.|+.++|...|+...  ... +.+...+..+...+...|   +.++|+..|.+..+    
T Consensus       537 ~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL--~l~-P~~~~l~~~La~~l~~~G---r~~eAl~~~~~AL~----  604 (987)
T PRK09782        537 LH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAE--QRG-LGDNALYWWLHAQRYIPG---QPELALNDLTRSLN----  604 (987)
T ss_pred             cc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcC-CccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHH----
Confidence            54  3444556666777888888888888888877  222 222223333333444557   55688888888875    


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC
Q 002761          316 LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQP  395 (883)
Q Consensus       316 i~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~  395 (883)
                      +.|+...|..+-.++.+.|++++|...|+...........         .++.+-..+...|+.++|+..|++..+..  
T Consensus       605 l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~---------a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--  673 (987)
T PRK09782        605 IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN---------YQAALGYALWDSGDIAQSREMLERAHKGL--  673 (987)
T ss_pred             hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--
Confidence            5677777888888888888888888888888765433222         46777788888888888888888887654  


Q ss_pred             CCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCc
Q 002761          396 VPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDA  460 (883)
Q Consensus       396 i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~  460 (883)
                       |.+..+                         ...++..+...|..++|...++...  .+.|+.
T Consensus       674 -P~~~~a-------------------------~~nLA~al~~lGd~~eA~~~l~~Al--~l~P~~  710 (987)
T PRK09782        674 -PDDPAL-------------------------IRQLAYVNQRLDDMAATQHYARLVI--DDIDNQ  710 (987)
T ss_pred             -CCCHHH-------------------------HHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCC
Confidence             433321                         1234555566888888888887443  345654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.99  E-value=1.8e-09  Score=117.75  Aligned_cols=259  Identities=17%  Similarity=0.142  Sum_probs=89.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCC
Q 002761          109 GLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIA-LARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNK  187 (883)
Q Consensus       109 ~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~-LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G  187 (883)
                      .+-..+.+.|++++|++++++-......|+...|-. +...+-..++.+.|...++++...+......+..++.. ...+
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~   91 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            335556677888888888755443332344444433 33445556778888888888877654321256666666 5777


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002761          188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG-RMATTFHFNHLLSCQATCGIPEVAFATF  266 (883)
Q Consensus       188 ~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G-~~Pd~~tyn~LI~~y~k~G~~e~A~~lf  266 (883)
                      ++++|.+++...-+..  ++...+..++..+.+.++++++..+++...... ..++...|..+...|.+.|+.++|.++|
T Consensus        92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~  169 (280)
T PF13429_consen   92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY  169 (280)
T ss_dssp             ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8888887776654432  455667777777888888888888887766432 3456677777777788888888888888


Q ss_pred             HHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002761          267 ENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRA  345 (883)
Q Consensus       267 ~~M~~g~~gi~p-d~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~  345 (883)
                      ++...    ..| |....+.++..+...|   +..++.+++....+   ....|...+..+-.+|...|+.++|..+|+.
T Consensus       170 ~~al~----~~P~~~~~~~~l~~~li~~~---~~~~~~~~l~~~~~---~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~  239 (280)
T PF13429_consen  170 RKALE----LDPDDPDARNALAWLLIDMG---DYDEAREALKRLLK---AAPDDPDLWDALAAAYLQLGRYEEALEYLEK  239 (280)
T ss_dssp             HHHHH----H-TT-HHHHHHHHHHHCTTC---HHHHHHHHHHHHHH---H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHH----cCCCCHHHHHHHHHHHHHCC---ChHHHHHHHHHHHH---HCcCHHHHHHHHHHHhccccccccccccccc
Confidence            77652    244 4666777777787777   45566666666654   2234445566777778888888888888888


Q ss_pred             HHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002761          346 LQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM  389 (883)
Q Consensus       346 M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M  389 (883)
                      ..+.......         ....+.+++.+.|+.++|.++..+.
T Consensus       240 ~~~~~p~d~~---------~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  240 ALKLNPDDPL---------WLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             HHHHSTT-HH---------HHHHHHHHHT---------------
T ss_pred             cccccccccc---------ccccccccccccccccccccccccc
Confidence            7753322211         2356777888888888888777665

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.96  E-value=2.8e-09  Score=116.19  Aligned_cols=253  Identities=14%  Similarity=0.084  Sum_probs=111.0

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPGPRS-FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK  157 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~t-yn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~  157 (883)
                      +.+.|+++.|+++++.-....-+|+... |..+-..+-..++++.|...++++...+-. +...+..++.. ...+++++
T Consensus        18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~   95 (280)
T PF13429_consen   18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEE   95 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccc
Confidence            5577999999999976544432344444 444445556678999999999999876544 55567777777 78999999


Q ss_pred             HHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002761          158 GLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKG-GLRATDEIYDLMIAEDCKAGDHSNALEIAYEME  235 (883)
Q Consensus       158 A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~-gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~  235 (883)
                      |..++....+..  ++. .+..++..|.+.++++++..+++..... ..+.+...|..+...+.+.|+.++|.++++...
T Consensus        96 A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al  173 (280)
T PF13429_consen   96 ALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL  173 (280)
T ss_dssp             ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             cccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999988776554  333 6778888999999999999999998753 245677889999999999999999999999998


Q ss_pred             HcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC
Q 002761          236 AAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK  314 (883)
Q Consensus       236 ~~G~~P-d~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~  314 (883)
                      +..  | |....+.++..+...|+.+++.+++.....  . ...|...|..+..+|...|   +.++|+.+|.+..+   
T Consensus       174 ~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~--~-~~~~~~~~~~la~~~~~lg---~~~~Al~~~~~~~~---  242 (280)
T PF13429_consen  174 ELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLK--A-APDDPDLWDALAAAYLQLG---RYEEALEYLEKALK---  242 (280)
T ss_dssp             HH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH--H--HTSCCHCHHHHHHHHHHT----HHHHHHHHHHHHH---
T ss_pred             HcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH--H-CcCHHHHHHHHHHHhcccc---cccccccccccccc---
Confidence            863  4 577889999999999999999999988773  1 1455667889999999999   66799999999886   


Q ss_pred             CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002761          315 RLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQ  347 (883)
Q Consensus       315 gi~P-d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~  347 (883)
                       ..| |..+...+..++...|+.++|..+.+...
T Consensus       243 -~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  243 -LNPDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             -HSTT-HHHHHHHHHHHT----------------
T ss_pred             -ccccccccccccccccccccccccccccccccc
Confidence             345 67777888999999999999999987664

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.96  E-value=1.6e-06  Score=99.53  Aligned_cols=252  Identities=15%  Similarity=0.114  Sum_probs=197.7

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFH--GLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT  156 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn--~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~  156 (883)
                      ..+.|+++.|...|.++.+.  .|+...+-  .....+...|+++.|...++++.+.. +-+...+..+...|.+.|+++
T Consensus       128 A~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~  204 (398)
T PRK10747        128 AQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWS  204 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHH
Confidence            35779999999999999864  46654333  33567888999999999999998765 235778889999999999999


Q ss_pred             HHHHHHHHHHHcCCChhH--------HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 002761          157 KGLEILAAMEKINYDIRQ--------AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNAL  228 (883)
Q Consensus       157 ~A~~l~~~m~~~g~~pdv--------tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~  228 (883)
                      .|..++..+.+.+..++.        +|..++....+..+.+...++++.+... .+.+......+..++...|+.++|.
T Consensus       205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~  283 (398)
T PRK10747        205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ  283 (398)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence            999999999998765332        3344455555556667777777776542 3456788889999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 002761          229 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM  308 (883)
Q Consensus       229 ~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~  308 (883)
                      +++....+.  .|+..  -.++.+.+..++.+++.+..+...+   ..+-|...+.++-..|.+.+   ++.+|.+.|+.
T Consensus       284 ~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk---~~P~~~~l~l~lgrl~~~~~---~~~~A~~~le~  353 (398)
T PRK10747        284 QIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIK---QHGDTPLLWSTLGQLLMKHG---EWQEASLAFRA  353 (398)
T ss_pred             HHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence            999998874  44442  2234445566999999999998873   22345666888999999999   66799999999


Q ss_pred             hHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002761          309 MVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN  348 (883)
Q Consensus       309 M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~  348 (883)
                      ..+    ..|+..+|..+-.++.+.|+.++|.++++.-..
T Consensus       354 al~----~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        354 ALK----QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHh----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            986    679999999999999999999999999987643

>TIGR00540 hemY_coli hemY protein

Probab=98.93  E-value=2.2e-06  Score=98.79  Aligned_cols=292  Identities=12%  Similarity=0.048  Sum_probs=203.9

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCH
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPGPR-SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH--ETLIALARLFGSKGLA  155 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~-tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~--~ty~~LI~a~~~~g~~  155 (883)
                      ....|++..|.+.+....+.  .|+.. .|-..-.++.+.|+++.|.+.|.+..+.  .|+.  ...-.....+...|++
T Consensus        94 a~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~  169 (409)
T TIGR00540        94 KLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNEL  169 (409)
T ss_pred             HHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCH
Confidence            55689999999999887765  45533 3334456677889999999999998764  3554  2344457788889999


Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HHcCChHHHHHHHH
Q 002761          156 TKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED---CKAGDHSNALEIAY  232 (883)
Q Consensus       156 ~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~---~k~g~~eeA~~lf~  232 (883)
                      +.|...++.+.+.......++..+...|.+.|++++|.+++..+.+.++.+....-..-..++   ...+..+++.+.+.
T Consensus       170 ~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~  249 (409)
T TIGR00540       170 HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL  249 (409)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            999999999999875443488899999999999999999999999887543332212122222   33333333444555


Q ss_pred             HHHHcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHH-HHHHHHHHHcCCcccHHHHHHHHHH
Q 002761          233 EMEAAGR---MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETY-NCVIQAYTRAESYDRVQDVAELLGM  308 (883)
Q Consensus       233 ~M~~~G~---~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~ty-n~LI~ay~~~G~~d~~~eAl~lf~~  308 (883)
                      .+.....   +.+...+..+...+...|+.+.|..++++..+  .  .||.... -.++..+..... +....+.+.++.
T Consensus       250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~--~pd~~~~~~~~l~~~~~l~~-~~~~~~~~~~e~  324 (409)
T TIGR00540       250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--K--LGDDRAISLPLCLPIPRLKP-EDNEKLEKLIEK  324 (409)
T ss_pred             HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--h--CCCcccchhHHHHHhhhcCC-CChHHHHHHHHH
Confidence            5554421   13788899999999999999999999999873  2  3443321 013343333321 256688888888


Q ss_pred             hHhccCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHH
Q 002761          309 MVEDHKRLQPNVK---TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEA  385 (883)
Q Consensus       309 M~~~~~gi~Pd~~---Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~l  385 (883)
                      ..+    ..|+..   ...++-..|.+.|++++|.++|+........|+..        .+..+...+.+.|+.++|.++
T Consensus       325 ~lk----~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~--------~~~~La~ll~~~g~~~~A~~~  392 (409)
T TIGR00540       325 QAK----NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN--------DLAMAADAFDQAGDKAEAAAM  392 (409)
T ss_pred             HHH----hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH--------HHHHHHHHHHHcCCHHHHHHH
Confidence            776    345544   44577778999999999999999533222222222        356899999999999999999


Q ss_pred             HHHHhh
Q 002761          386 LEAMAK  391 (883)
Q Consensus       386 f~~M~~  391 (883)
                      +++-..
T Consensus       393 ~~~~l~  398 (409)
T TIGR00540       393 RQDSLG  398 (409)
T ss_pred             HHHHHH
Confidence            998543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.91  E-value=2.1e-08  Score=117.64  Aligned_cols=245  Identities=16%  Similarity=0.066  Sum_probs=128.3

Q ss_pred             HHHHHcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 002761           43 QRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEG  122 (883)
Q Consensus        43 ~~M~~~gv~Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~  122 (883)
                      ..|...|+.||.+||.++|..||..               |+++.|- +|.-|.-..+..+...|+.++.+..++++.+.
T Consensus        14 a~~e~~gi~PnRvtyqsLiarYc~~---------------gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~En   77 (1088)
T KOG4318|consen   14 ALHEISGILPNRVTYQSLIARYCTK---------------GDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAEN   77 (1088)
T ss_pred             HHHHHhcCCCchhhHHHHHHHHccc---------------CCCcccc-chhhhhcccccccchhHHHHHhcccccccccC
Confidence            4566779999999999999998877               5556666 67767666666666777777777777776665


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HH-------HcCCChhH---------------HHHHH
Q 002761          123 AMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAA-ME-------KINYDIRQ---------------AWLIL  179 (883)
Q Consensus       123 A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~-m~-------~~g~~pdv---------------tyn~L  179 (883)
                      +.           .|...||+.|+.+|...|++.. ++..++ |.       ..|+....               --.++
T Consensus        78 pk-----------ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~  145 (1088)
T KOG4318|consen   78 PK-----------EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA  145 (1088)
T ss_pred             CC-----------CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH
Confidence            54           5666777777777777776544 111111 11       11211100               01122


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC
Q 002761          180 VEELVRNKYLEDANKVFLRGAKGG-LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGR-MATTFHFNHLLSCQATCG  257 (883)
Q Consensus       180 I~~y~k~G~~eeA~~lf~~M~~~g-i~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~-~Pd~~tyn~LI~~y~k~G  257 (883)
                      +....-.|.++.+.+++..|.... ..|-.+    +|+-+.....  -..++.. |.+.+. .|+..+|.++++.-.-+|
T Consensus       146 illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~nt--pvekLl~-~cksl~e~~~s~~l~a~l~~alaag  218 (1088)
T KOG4318|consen  146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNT--PVEKLLN-MCKSLVEAPTSETLHAVLKRALAAG  218 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCc--hHHHHHH-HHHHhhcCCChHHHHHHHHHHHhcC
Confidence            223333344444444443332110 001111    1222222111  1112222 112112 356666666666666666


Q ss_pred             CHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHH
Q 002761          258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK  332 (883)
Q Consensus       258 ~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k  332 (883)
                      +++.|..++.+|+  +.|+.-+..-|-.||.|   .+   .+.-+..+++.|.+  .|+.|+..|+.-.+..+.+
T Consensus       219 ~~d~Ak~ll~emk--e~gfpir~HyFwpLl~g---~~---~~q~~e~vlrgmqe--~gv~p~seT~adyvip~l~  283 (1088)
T KOG4318|consen  219 DVDGAKNLLYEMK--EKGFPIRAHYFWPLLLG---IN---AAQVFEFVLRGMQE--KGVQPGSETQADYVIPQLS  283 (1088)
T ss_pred             chhhHHHHHHHHH--HcCCCcccccchhhhhc---Cc---cchHHHHHHHHHHH--hcCCCCcchhHHHHHhhhc
Confidence            6666666666666  56666555555555555   33   33344455555555  5666666666544444443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.86  E-value=1.8e-06  Score=89.08  Aligned_cols=200  Identities=16%  Similarity=0.051  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 002761          104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEEL  183 (883)
Q Consensus       104 ~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y  183 (883)
                      ...+..+...|...|++++|...|++..... +.+...+..+...+...|+++.|...+.+..+........+..+...|
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            3455556666666666666666666655432 223445555666666666666666666666655433223555666666


Q ss_pred             HHCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002761          184 VRNKYLEDANKVFLRGAKGGLRA-TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA  262 (883)
Q Consensus       184 ~k~G~~eeA~~lf~~M~~~gi~p-d~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A  262 (883)
                      ...|++++|...|.+.......+ ....+..+...+...|++++|...|........ .+...+..+...|.+.|++++|
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHH
Confidence            66666666666666665432111 234455555666666666666666666655421 2344556666666666666666


Q ss_pred             HHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 002761          263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE  311 (883)
Q Consensus       263 ~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~  311 (883)
                      ...|++..  .. ...+...+..+...+...|   +.++|..++..+..
T Consensus       189 ~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~  231 (234)
T TIGR02521       189 RAYLERYQ--QT-YNQTAESLWLGIRIARALG---DVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHH--Hh-CCCCHHHHHHHHHHHHHHh---hHHHHHHHHHHHHh
Confidence            66666655  22 2334455555666666666   44466666655554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.85  E-value=1.8e-06  Score=89.03  Aligned_cols=196  Identities=15%  Similarity=0.039  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 002761          141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCK  220 (883)
Q Consensus       141 ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k  220 (883)
                      .+..+...+...|++++|...+.+..+........+..+...|...|++++|...|++..+.. +.+...+..+...+..
T Consensus        33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~  111 (234)
T TIGR02521        33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ  111 (234)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence            344444455555555555555555444321111144444455555555555555555444422 1223344444445555


Q ss_pred             cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccH
Q 002761          221 AGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV  299 (883)
Q Consensus       221 ~g~~eeA~~lf~~M~~~G~~P-d~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~  299 (883)
                      .|++++|.+.|.........| ....+..+...|.+.|++++|...|++...  . .+.+...|..+...+...|   +.
T Consensus       112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~~~~la~~~~~~~---~~  185 (234)
T TIGR02521       112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ--I-DPQRPESLLELAELYYLRG---QY  185 (234)
T ss_pred             cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h-CcCChHHHHHHHHHHHHcC---CH
Confidence            555555555555544322111 223334444445555555555555554441  1 1112334444445555555   33


Q ss_pred             HHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002761          300 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL  346 (883)
Q Consensus       300 ~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M  346 (883)
                      ++|...+++...  . ...+...+..+...+...|+.++|..+.+.+
T Consensus       186 ~~A~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       186 KDARAYLERYQQ--T-YNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            345445554444  2 2234444444445555555555555554444

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR00540 hemY_coli hemY protein

Probab=98.84  E-value=5.8e-06  Score=95.32  Aligned_cols=259  Identities=12%  Similarity=0.023  Sum_probs=183.4

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPGP--RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT  156 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G~~pd~--~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~  156 (883)
                      +.+.|+.+.|...|.+..+..  |+.  ...-+....+...|+++.|...++.+.+.. +-+...+..+...+.+.|+++
T Consensus       128 a~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~  204 (409)
T TIGR00540       128 AQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ  204 (409)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence            556799999999999987653  443  333445777888999999999999998875 226678889999999999999


Q ss_pred             HHHHHHHHHHHcCCChhHHHH-HHHHHH---HHCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCChHHHHH
Q 002761          157 KGLEILAAMEKINYDIRQAWL-ILVEEL---VRNKYLEDANKVFLRGAKGG---LRATDEIYDLMIAEDCKAGDHSNALE  229 (883)
Q Consensus       157 ~A~~l~~~m~~~g~~pdvtyn-~LI~~y---~k~G~~eeA~~lf~~M~~~g---i~pd~~tyn~LI~a~~k~g~~eeA~~  229 (883)
                      .|.+++..+.+.+..+...+. .-..++   ...+..+.+...+..+....   .+.+...+..+...+...|+.++|.+
T Consensus       205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~  284 (409)
T TIGR00540       205 ALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE  284 (409)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence            999999999999765443332 111221   22222232333444444322   11377889999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHH
Q 002761          230 IAYEMEAAGRMATTFHFNHLLSCQ--ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG  307 (883)
Q Consensus       230 lf~~M~~~G~~Pd~~tyn~LI~~y--~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~  307 (883)
                      ++++..+.........+- ++..+  ...++.+.+.+.++...+ ...-.|+.....++-..|.+.|   +..+|.+.|+
T Consensus       285 ~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk-~~p~~~~~~ll~sLg~l~~~~~---~~~~A~~~le  359 (409)
T TIGR00540       285 IIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAK-NVDDKPKCCINRALGQLLMKHG---EFIEAADAFK  359 (409)
T ss_pred             HHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHH-hCCCChhHHHHHHHHHHHHHcc---cHHHHHHHHH
Confidence            999999864332211111 33333  345778888888877663 2222222245568888999999   6669999999


Q ss_pred             HhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002761          308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ  347 (883)
Q Consensus       308 ~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~  347 (883)
                      ....  ....||..++..+...+.+.|+.++|.+++++-.
T Consensus       360 ~a~a--~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       360 NVAA--CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HhHH--hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4222  2467999999999999999999999999998764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK12370 invasion protein regulator; Provisional

Probab=98.75  E-value=4e-06  Score=100.44  Aligned_cols=249  Identities=10%  Similarity=-0.005  Sum_probs=161.9

Q ss_pred             CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002761           83 RDAPRVNDVIYDMIAAGLSPG-PRSFHGLVVAYTL---------NGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSK  152 (883)
Q Consensus        83 G~~~~A~~lf~~M~~~G~~pd-~~tyn~LI~a~~~---------~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~  152 (883)
                      ++++.|..+|++..+.  .|+ ...|..+-.+|..         .+++++|...+++...... -+...+..+-..+...
T Consensus       275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~  351 (553)
T PRK12370        275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIH  351 (553)
T ss_pred             HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHc
Confidence            3456888888888765  343 4455555444432         2347888888888776531 2566677777778888


Q ss_pred             CCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHH
Q 002761          153 GLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIA  231 (883)
Q Consensus       153 g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~lf  231 (883)
                      |++++|...|++..+.+......|..+-..|...|++++|...|++..+..  |+. ..+..+...+...|++++|...+
T Consensus       352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~  429 (553)
T PRK12370        352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLG  429 (553)
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence            899999999988888764433377788888888999999999998887743  443 23334445566688888898888


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 002761          232 YEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE  311 (883)
Q Consensus       232 ~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~  311 (883)
                      ++......+-+...+..+-..|...|+.++|...+.++..   ...-+...++.+...|+..|.     .|...++.+.+
T Consensus       430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~-----~a~~~l~~ll~  501 (553)
T PRK12370        430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNSE-----RALPTIREFLE  501 (553)
T ss_pred             HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccHH-----HHHHHHHHHHH
Confidence            8877653222444567777788888999999998888662   112234445666666777772     55555555554


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002761          312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN  348 (883)
Q Consensus       312 ~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~  348 (883)
                      . ....|+...+..++  |.-.|+-+.+..+ +.+.+
T Consensus       502 ~-~~~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~  534 (553)
T PRK12370        502 S-EQRIDNNPGLLPLV--LVAHGEAIAEKMW-NKFKN  534 (553)
T ss_pred             H-hhHhhcCchHHHHH--HHHHhhhHHHHHH-HHhhc
Confidence            2 23344444444444  4445666666655 66654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.73  E-value=3.5e-05  Score=84.75  Aligned_cols=289  Identities=10%  Similarity=-0.014  Sum_probs=223.0

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002761           80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL  159 (883)
Q Consensus        80 ~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~  159 (883)
                      .-.|++..|+++..+-.+.+- -....|-.-..+--+.|+.+.|-.++.+..+.--.++...+-+..+.....|++..|.
T Consensus        95 l~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~  173 (400)
T COG3071          95 LFEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR  173 (400)
T ss_pred             HhcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence            347999999999999877663 3345666667777788999999999998876533556667778888889999999999


Q ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCChHHHHHHHH
Q 002761          160 EILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-------EIYDLMIAEDCKAGDHSNALEIAY  232 (883)
Q Consensus       160 ~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-------~tyn~LI~a~~k~g~~eeA~~lf~  232 (883)
                      .-.+++.+.+..+..+......+|.+.|++.....+...|.+.|+--+.       .+|+.+++-....+..+.-..-++
T Consensus       174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~  253 (400)
T COG3071         174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK  253 (400)
T ss_pred             HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            9999999998877779999999999999999999999999998876554       488888888777776666555666


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhc
Q 002761          233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED  312 (883)
Q Consensus       233 ~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~  312 (883)
                      ....+ .+-+...-.+++.-+.+||+.++|.++..+-.  +.+..|...    ..-.+.+-++..   .-++..++-.+.
T Consensus       254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L--k~~~D~~L~----~~~~~l~~~d~~---~l~k~~e~~l~~  323 (400)
T COG3071         254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL--KRQWDPRLC----RLIPRLRPGDPE---PLIKAAEKWLKQ  323 (400)
T ss_pred             hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH--HhccChhHH----HHHhhcCCCCch---HHHHHHHHHHHh
Confidence            55433 34456677788899999999999999998877  566666632    223455556433   444444444442


Q ss_pred             cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 002761          313 HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD  392 (883)
Q Consensus       313 ~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~  392 (883)
                       .+-.|  -.+.+|=.-|.+.+.+.+|..+|+...+.          .+...+|+-+-++|.+.|...+|.+.+++-...
T Consensus       324 -h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~----------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         324 -HPEDP--LLLSTLGRLALKNKLWGKASEALEAALKL----------RPSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             -CCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc----------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence             34555  56777888899999999999999977652          233347999999999999999999999987643

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.67  E-value=0.00012  Score=87.47  Aligned_cols=325  Identities=15%  Similarity=0.094  Sum_probs=229.9

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLIALARLFGSKGLATK  157 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~~LI~a~~~~g~~~~  157 (883)
                      +++ |++++|..++.+..+.. +.+...|-+|-..|-+.|+.++++..+-.  ..-+.| |..-|..+-....+.|++..
T Consensus       150 far-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~ll--AAHL~p~d~e~W~~ladls~~~~~i~q  225 (895)
T KOG2076|consen  150 FAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLL--AAHLNPKDYELWKRLADLSEQLGNINQ  225 (895)
T ss_pred             HHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHH--HHhcCCCChHHHHHHHHHHHhcccHHH
Confidence            555 99999999999999876 56788999999999999999999887643  333444 66778888888899999999


Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHH
Q 002761          158 GLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD----EIYDLMIAEDCKAGDHSNALEIAYE  233 (883)
Q Consensus       158 A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~----~tyn~LI~a~~k~g~~eeA~~lf~~  233 (883)
                      |.-.|.+.++.....-..+--=+..|-+.|+...|..-|.+|.....+.|.    .+--.++..|...++-+.|.+.+..
T Consensus       226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~  305 (895)
T KOG2076|consen  226 ARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG  305 (895)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            999999999986433233344467889999999999999999875321122    2333456667778888999988887


Q ss_pred             HHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCC---------------------------CHHHHHH
Q 002761          234 MEAA-GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP---------------------------DTETYNC  285 (883)
Q Consensus       234 M~~~-G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~p---------------------------d~~tyn~  285 (883)
                      .... +-..+...+|.++..|.+...++.|......+.  .....+                           +...+- 
T Consensus       306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~--~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-  382 (895)
T KOG2076|consen  306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDR--NRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-  382 (895)
T ss_pred             HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHh--ccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-
Confidence            7662 223456678899999999999999998888777  322222                           222211 


Q ss_pred             HHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCC
Q 002761          286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP--NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG  363 (883)
Q Consensus       286 LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P--d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~  363 (883)
                      +.-++.+.... ...+++  .+....  ..+.|  +.-.|.-+..+|...|++.+|+.+|..+.+.......        
T Consensus       383 l~icL~~L~~~-e~~e~l--l~~l~~--~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~--------  449 (895)
T KOG2076|consen  383 LMICLVHLKER-ELLEAL--LHFLVE--DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA--------  449 (895)
T ss_pred             Hhhhhhccccc-chHHHH--HHHHHH--hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch--------
Confidence            12223333211 233343  333333  24333  3456778889999999999999999999875543331        


Q ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHH
Q 002761          364 DPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGE  443 (883)
Q Consensus       364 dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~e  443 (883)
                      ..|--+-.+|-..|..++|.+.|+......   |.+.-       ..+                  .|+......|..++
T Consensus       450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~---p~~~D-------~Ri------------------~Lasl~~~~g~~Ek  501 (895)
T KOG2076|consen  450 FVWYKLARCYMELGEYEEAIEFYEKVLILA---PDNLD-------ARI------------------TLASLYQQLGNHEK  501 (895)
T ss_pred             hhhHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCchh-------hhh------------------hHHHHHHhcCCHHH
Confidence            247788899999999999999999998765   33221       000                  13344455899999


Q ss_pred             HHHHHHHh
Q 002761          444 RKRWVPRR  451 (883)
Q Consensus       444 A~~l~~~m  451 (883)
                      |.+.+..|
T Consensus       502 alEtL~~~  509 (895)
T KOG2076|consen  502 ALETLEQI  509 (895)
T ss_pred             HHHHHhcc
Confidence            99998754

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.65  E-value=0.00041  Score=83.02  Aligned_cols=361  Identities=12%  Similarity=0.040  Sum_probs=230.8

Q ss_pred             HHHHHHHHHHHHhCCChhhHHHHHHcCCC---CChhHHHHHHHHHHccCChHHHH------------------HHH-HHH
Q 002761           23 VVPIRSAMSSPEKKTRRKKQQRRQQKHGD---SLLSTNGSVVSAAEQGLRLIFME------------------ELM-QHA   80 (883)
Q Consensus        23 ~~syn~LI~~~~k~g~~~~A~~M~~~gv~---Pd~~ty~~ll~a~~~~~~~~~~~------------------~L~-~~~   80 (883)
                      +...-...+-+.-.|++++|.+++..-++   -+...|-+|-..+...|+...+.                  .+. ...
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~  218 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE  218 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            44444444444555999999777765332   23344666666665555443222                  122 244


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHH
Q 002761           81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL----IALARLFGSKGLAT  156 (883)
Q Consensus        81 k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty----~~LI~a~~~~g~~~  156 (883)
                      +.|++.+|.-.|.+..+.. +++...+--=+..|-+.|+...|..-|.+|....-+.|..-+    -.+++.+...+.-+
T Consensus       219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e  297 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE  297 (895)
T ss_pred             hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence            5677888888888888765 345444445566778889999999999888775332222222    23455566677778


Q ss_pred             HHHHHHHHHHHcCCCh-hH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH----------------------HHHH
Q 002761          157 KGLEILAAMEKINYDI-RQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATD----------------------EIYD  212 (883)
Q Consensus       157 ~A~~l~~~m~~~g~~p-dv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~----------------------~tyn  212 (883)
                      .|.+.+......+..- +. .+|++...|.+....+.|......+......+|.                      .+|+
T Consensus       298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~  377 (895)
T KOG2076|consen  298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD  377 (895)
T ss_pred             HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence            8888888777633222 22 7888899999999999888888777652222222                      1222


Q ss_pred             H----HHHHHHHcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHH
Q 002761          213 L----MIAEDCKAGDHSNALEIAYEMEAAGRM--ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV  286 (883)
Q Consensus       213 ~----LI~a~~k~g~~eeA~~lf~~M~~~G~~--Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~L  286 (883)
                      .    +.-++......+....+..-.....+.  -+.-.|.-+.++|-..|++.+|..+|..+.  .....-+.+.|--+
T Consensus       378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~--~~~~~~~~~vw~~~  455 (895)
T KOG2076|consen  378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT--NREGYQNAFVWYKL  455 (895)
T ss_pred             chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh--cCccccchhhhHHH
Confidence            1    222334444445555555555555533  356678889999999999999999999999  55555568899999


Q ss_pred             HHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcH
Q 002761          287 IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK-TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP  365 (883)
Q Consensus       287 I~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~-Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dt  365 (883)
                      -.+|-..|   ..++|++.|...+.    ..|+.. .-.+|-+-+-+.|+.++|.+.+..|..-+....-...+.+-...
T Consensus       456 a~c~~~l~---e~e~A~e~y~kvl~----~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri  528 (895)
T KOG2076|consen  456 ARCYMELG---EYEEAIEFYEKVLI----LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRI  528 (895)
T ss_pred             HHHHHHHh---hHHHHHHHHHHHHh----cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHH
Confidence            99999999   55699999999986    556543 33455567888999999999998876322111000000000002


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761          366 LSLYLRALCREGRIIELLEALEAMAKDN  393 (883)
Q Consensus       366 Yn~LI~~y~~~G~~~eA~~lf~~M~~~G  393 (883)
                      ---..+.|.+.|+.++-+..-..|....
T Consensus       529 ~~~r~d~l~~~gk~E~fi~t~~~Lv~~~  556 (895)
T KOG2076|consen  529 LAHRCDILFQVGKREEFINTASTLVDDF  556 (895)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            2345677888899888777776665543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=4.5e-05  Score=85.01  Aligned_cols=248  Identities=14%  Similarity=0.063  Sum_probs=173.2

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C-hhH-HHHHHHHHHHHCCCHH-HHHH
Q 002761          119 DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINY-D-IRQ-AWLILVEELVRNKYLE-DANK  194 (883)
Q Consensus       119 ~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~-~-pdv-tyn~LI~~y~k~G~~e-eA~~  194 (883)
                      ..++++.=.......|+.-+...-+-...+.-...+++.|..+|+++.+... . .|. +|+.++-.--.+.++. -|..
T Consensus       242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~  321 (559)
T KOG1155|consen  242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN  321 (559)
T ss_pred             HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence            4445555555555555544443333333344445667777777777766532 1 123 5555443322222221 1222


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCC
Q 002761          195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED  274 (883)
Q Consensus       195 lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~  274 (883)
                      ++.-   ..  --..|..++-+-|+-.++.++|...|+...+.+.. ....|+.+-+-|....+...|..-++...   .
T Consensus       322 v~~i---dK--yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---d  392 (559)
T KOG1155|consen  322 VSNI---DK--YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAV---D  392 (559)
T ss_pred             HHHh---cc--CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHH---h
Confidence            2221   11  22345556666777888999999999999887533 56788989999999999999999999876   2


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 002761          275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT  353 (883)
Q Consensus       275 gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~  353 (883)
                      -.+.|-..|-.|-++|.-.+   ...-|+-.|++...    ++| |...|.+|-.+|.+.+++++|.+.|......+...
T Consensus       393 i~p~DyRAWYGLGQaYeim~---Mh~YaLyYfqkA~~----~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte  465 (559)
T KOG1155|consen  393 INPRDYRAWYGLGQAYEIMK---MHFYALYYFQKALE----LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE  465 (559)
T ss_pred             cCchhHHHHhhhhHHHHHhc---chHHHHHHHHHHHh----cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence            23678999999999999999   56689999999875    777 57889999999999999999999999988654332


Q ss_pred             ccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002761          354 KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK  391 (883)
Q Consensus       354 ~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~  391 (883)
                               ++.|..|-+.|-+-++.++|...|++-.+
T Consensus       466 ---------~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  466 ---------GSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             ---------hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                     23588999999999999999999987654

>PRK12370 invasion protein regulator; Provisional

Probab=98.56  E-value=6.1e-05  Score=90.32  Aligned_cols=265  Identities=12%  Similarity=-0.038  Sum_probs=178.0

Q ss_pred             CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH---------hcCCHHHHHHHHHHHH
Q 002761          102 PGPRSFHGLVVAYTLN-----GDHEGAMHSLKRELSAGVRPLH-ETLIALARLFG---------SKGLATKGLEILAAME  166 (883)
Q Consensus       102 pd~~tyn~LI~a~~~~-----g~~~~A~~lf~~M~~~Gi~Pd~-~ty~~LI~a~~---------~~g~~~~A~~l~~~m~  166 (883)
                      .+...|...+.+-...     +.+++|..+|++..+.  .|+. ..|..+..++.         ..+++++|...+++..
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            4556676777764321     3467899999987764  5653 34544444333         2244789999999998


Q ss_pred             HcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 002761          167 KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFH  245 (883)
Q Consensus       167 ~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~t  245 (883)
                      +.......+|..+-..+...|++++|...|++..+.+  |+ ...|..+-..|...|++++|...++...+..-. +...
T Consensus       332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~  408 (553)
T PRK12370        332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA  408 (553)
T ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence            8764433488888888899999999999999988743  55 467888888999999999999999998876433 2223


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHH
Q 002761          246 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA  324 (883)
Q Consensus       246 yn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~p-d~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~  324 (883)
                      +..+...+...|++++|...+++..  ... .| +...+..+-..|...|   +.++|...+.++..    ..|+..+..
T Consensus       409 ~~~~~~~~~~~g~~eeA~~~~~~~l--~~~-~p~~~~~~~~la~~l~~~G---~~~eA~~~~~~~~~----~~~~~~~~~  478 (553)
T PRK12370        409 GITKLWITYYHTGIDDAIRLGDELR--SQH-LQDNPILLSMQVMFLSLKG---KHELARKLTKEIST----QEITGLIAV  478 (553)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHH--Hhc-cccCHHHHHHHHHHHHhCC---CHHHHHHHHHHhhh----ccchhHHHH
Confidence            3344555777899999999998876  221 24 3445677778888999   66699999988754    356555544


Q ss_pred             -HHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761          325 -LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN  393 (883)
Q Consensus       325 -~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~G  393 (883)
                       .+-..|+..|  +.|...++.+.+.......-         +..+-..|.-.|+-+.+..+ +++.+.|
T Consensus       479 ~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~---------~~~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        479 NLLYAEYCQNS--ERALPTIREFLESEQRIDNN---------PGLLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             HHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC---------chHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence             4444667667  57888777766421110000         11233445556777777766 8887766

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.56  E-value=5.6e-05  Score=81.02  Aligned_cols=294  Identities=15%  Similarity=0.116  Sum_probs=198.3

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCC
Q 002761           81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH------ETLIALARLFGSKGL  154 (883)
Q Consensus        81 k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~------~ty~~LI~a~~~~g~  154 (883)
                      -..+.+.|..+|-+|.+.. +-+..+--+|-+.|-+.|..+.|+++..-+..+   ||.      ...--|-.-|...|-
T Consensus        47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl  122 (389)
T COG2956          47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL  122 (389)
T ss_pred             hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence            3467799999999999642 223445556778888999999999999888764   442      123456667888899


Q ss_pred             HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChHHHHHH
Q 002761          155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD----EIYDLMIAEDCKAGDHSNALEI  230 (883)
Q Consensus       155 ~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~----~tyn~LI~a~~k~g~~eeA~~l  230 (883)
                      ++.|..+|..+...+--....-..|+..|-+..++++|.++-.++.+.+-.+..    .-|--|...+....+++.|..+
T Consensus       123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~  202 (389)
T COG2956         123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL  202 (389)
T ss_pred             hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            999999999998865433336778899999999999999999988875543332    2444555555567788999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 002761          231 AYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV  310 (883)
Q Consensus       231 f~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~  310 (883)
                      +....+..-+ .+..--.+-+.+...|+++.|.+.++.+.  +.+..--..+-..|..+|.+.|   +.++....+..+.
T Consensus       203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~--eQn~~yl~evl~~L~~~Y~~lg---~~~~~~~fL~~~~  276 (389)
T COG2956         203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVL--EQNPEYLSEVLEMLYECYAQLG---KPAEGLNFLRRAM  276 (389)
T ss_pred             HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHH
Confidence            9888776422 23333345567888999999999999988  3332223455778899999999   6678888888887


Q ss_pred             hccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHH---HcCCHHHHHHHHH
Q 002761          311 EDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC---REGRIIELLEALE  387 (883)
Q Consensus       311 ~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~---~~G~~~eA~~lf~  387 (883)
                      +.    .++...-..|-.--....-.+.|..+...-.+..  |++.        .+..||+.-.   ..|+..+.+.+++
T Consensus       277 ~~----~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--Pt~~--------gf~rl~~~~l~daeeg~~k~sL~~lr  342 (389)
T COG2956         277 ET----NTGADAELMLADLIELQEGIDAAQAYLTRQLRRK--PTMR--------GFHRLMDYHLADAEEGRAKESLDLLR  342 (389)
T ss_pred             Hc----cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC--CcHH--------HHHHHHHhhhccccccchhhhHHHHH
Confidence            73    2332222333222222334455655554443322  2222        2445666543   3467888888999


Q ss_pred             HHhhCCCCCCC
Q 002761          388 AMAKDNQPVPP  398 (883)
Q Consensus       388 ~M~~~Gi~i~p  398 (883)
                      .|....++-.|
T Consensus       343 ~mvge~l~~~~  353 (389)
T COG2956         343 DMVGEQLRRKP  353 (389)
T ss_pred             HHHHHHHhhcC
Confidence            99776654333

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.55  E-value=1.1e-05  Score=93.60  Aligned_cols=280  Identities=14%  Similarity=0.105  Sum_probs=199.0

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--hhH-HHHHHHHHHHHCCCHH-HHHH
Q 002761          119 DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD--IRQ-AWLILVEELVRNKYLE-DANK  194 (883)
Q Consensus       119 ~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~--pdv-tyn~LI~~y~k~G~~e-eA~~  194 (883)
                      +..+|+.+|...... +.-......-+-++|...+++++|+.+|+.+.+...-  -+. .|.+.+--+-+.=.+. -|..
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~  412 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD  412 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence            467899999885443 3334466677889999999999999999999876421  123 7777665443321111 1333


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC
Q 002761          195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGE  273 (883)
Q Consensus       195 lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~P-d~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~  273 (883)
                      +.+.+     +-...||-++-++|.-.++++.|++.|++..+.  .| ...+|+.+-.-+.....+|.|...|+...   
T Consensus       413 Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---  482 (638)
T KOG1126|consen  413 LIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---  482 (638)
T ss_pred             HHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---
Confidence            33332     234589999999999999999999999988875  44 67888888888888899999999999887   


Q ss_pred             CCCCCCHHHHHH---HHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002761          274 DYMKPDTETYNC---VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNY  349 (883)
Q Consensus       274 ~gi~pd~~tyn~---LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~  349 (883)
                         ..|...||+   |-..|.+.+   +.+.|.-.|++..+    +.|. .+....+-..+-+.|+.++|+++|+.....
T Consensus       483 ---~~~~rhYnAwYGlG~vy~Kqe---k~e~Ae~~fqkA~~----INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l  552 (638)
T KOG1126|consen  483 ---GVDPRHYNAWYGLGTVYLKQE---KLEFAEFHFQKAVE----INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL  552 (638)
T ss_pred             ---cCCchhhHHHHhhhhheeccc---hhhHHHHHHHhhhc----CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence               778888876   455688888   66699999998875    6674 555666777888999999999999998754


Q ss_pred             CCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHH
Q 002761          350 EGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEID  429 (883)
Q Consensus       350 ~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D  429 (883)
                      .....+.-        | -.+..+...++.++|+..|+++++.   +|.++.+    |.                     
T Consensus       553 d~kn~l~~--------~-~~~~il~~~~~~~eal~~LEeLk~~---vP~es~v----~~---------------------  595 (638)
T KOG1126|consen  553 DPKNPLCK--------Y-HRASILFSLGRYVEALQELEELKEL---VPQESSV----FA---------------------  595 (638)
T ss_pred             CCCCchhH--------H-HHHHHHHhhcchHHHHHHHHHHHHh---CcchHHH----HH---------------------
Confidence            33222211        2 2466677889999999999999775   3666543    22                     


Q ss_pred             HHHHHHHhCCcHHHHHHHHHHhcCCCCCC
Q 002761          430 YIARYISEGGLTGERKRWVPRRGKTPLDP  458 (883)
Q Consensus       430 ~l~~~~~~~G~~~eA~~l~~~m~~~g~~P  458 (883)
                      ++++.+..-|..+.|..-|.-  .+.++|
T Consensus       596 llgki~k~~~~~~~Al~~f~~--A~~ldp  622 (638)
T KOG1126|consen  596 LLGKIYKRLGNTDLALLHFSW--ALDLDP  622 (638)
T ss_pred             HHHHHHHHHccchHHHHhhHH--HhcCCC
Confidence            345555556666777665552  234455

>PF12854 PPR_1: PPR repeat

Probab=98.55  E-value=9.9e-08  Score=69.42  Aligned_cols=32  Identities=25%  Similarity=0.439  Sum_probs=17.6

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 002761          238 GRMATTFHFNHLLSCQATCGIPEVAFATFENM  269 (883)
Q Consensus       238 G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M  269 (883)
                      |+.||.+|||+||++||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            45555555555555555555555555555555

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.54  E-value=0.0002  Score=86.19  Aligned_cols=338  Identities=13%  Similarity=0.070  Sum_probs=226.0

Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 002761           94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSA---GVRPLH------ETLIALARLFGSKGLATKGLEILAA  164 (883)
Q Consensus        94 ~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~---Gi~Pd~------~ty~~LI~a~~~~g~~~~A~~l~~~  164 (883)
                      .|...+-.+.+...|.+-..+...|.+.+|...|......   -..+|.      .+--.+-+.+-..++.+.|.+.|..
T Consensus       442 ~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~  521 (1018)
T KOG2002|consen  442 ILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS  521 (1018)
T ss_pred             HHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            3445565688899999999999999999999999987655   122333      2223344455556789999999999


Q ss_pred             HHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCH
Q 002761          165 MEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA-GRMATT  243 (883)
Q Consensus       165 m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~-G~~Pd~  243 (883)
                      +.+.....-..|--|..+.-..+...+|...+....... .-+...++.+-..+.+...+..|.+-|....+. -..+|.
T Consensus       522 Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~  600 (1018)
T KOG2002|consen  522 ILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDA  600 (1018)
T ss_pred             HHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCch
Confidence            988754221244444433334467788988888876532 344556666666888888888888877666543 223677


Q ss_pred             HHHHHHHHHHHH------------cCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 002761          244 FHFNHLLSCQAT------------CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE  311 (883)
Q Consensus       244 ~tyn~LI~~y~k------------~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~  311 (883)
                      ++.-+|-+.|..            .+..++|.++|.+..   ..-+.|...=|-+--.++..|   ++.+|..+|.+..+
T Consensus       601 YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL---~~dpkN~yAANGIgiVLA~kg---~~~~A~dIFsqVrE  674 (1018)
T KOG2002|consen  601 YSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL---RNDPKNMYAANGIGIVLAEKG---RFSEARDIFSQVRE  674 (1018)
T ss_pred             hHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH---hcCcchhhhccchhhhhhhcc---CchHHHHHHHHHHH
Confidence            776666665542            356788999999887   233568888899999999999   55599999999988


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002761          312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK  391 (883)
Q Consensus       312 ~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~  391 (883)
                      .  . .-+.-+|..+-++|...|++..|.++|+...+.....+-.+       ..+.|-.++-++|.+.+|.+.+..-..
T Consensus       675 a--~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~-------vl~~Lara~y~~~~~~eak~~ll~a~~  744 (1018)
T KOG2002|consen  675 A--T-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE-------VLHYLARAWYEAGKLQEAKEALLKARH  744 (1018)
T ss_pred             H--H-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH-------HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            2  2 23445778889999999999999999998876543222211       457899999999999999999888776


Q ss_pred             CCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCC
Q 002761          392 DNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLD  457 (883)
Q Consensus       392 ~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~  457 (883)
                      ..   |.+.++ -+...-.+....+.......  -.++-+   ...-+.+++|.++|..|...+-.
T Consensus       745 ~~---p~~~~v-~FN~a~v~kkla~s~lr~~k--~t~eev---~~a~~~le~a~r~F~~ls~~~d~  801 (1018)
T KOG2002|consen  745 LA---PSNTSV-KFNLALVLKKLAESILRLEK--RTLEEV---LEAVKELEEARRLFTELSKNGDK  801 (1018)
T ss_pred             hC---CccchH-HhHHHHHHHHHHHHHHhccc--ccHHHH---HHHHHHHHHHHHHHHHHHhcCCC
Confidence            64   344332 01111111111111100000  112211   22256689999999988776544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.53  E-value=0.0049  Score=71.67  Aligned_cols=375  Identities=13%  Similarity=0.074  Sum_probs=254.8

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002761           78 QHARNRDAPRVNDVIYDMIAAGLSP--GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA  155 (883)
Q Consensus        78 ~~~k~G~~~~A~~lf~~M~~~G~~p--d~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~  155 (883)
                      .+-+.|.+-.+..+......-|+.-  --.||+.--..|.+.+.++-|..+|...++- ++-+...|......=-..|..
T Consensus       488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~  566 (913)
T KOG0495|consen  488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTR  566 (913)
T ss_pred             HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcH
Confidence            3444566677777777777666533  2468888899999999999999999887653 344566777777777778889


Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002761          156 TKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME  235 (883)
Q Consensus       156 ~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~  235 (883)
                      +.-..+|.+....-....+.|-.....+-.+|++..|..++....+..- -+...|-.-+.--..+..++.|..+|....
T Consensus       567 Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar  645 (913)
T KOG0495|consen  567 ESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKAR  645 (913)
T ss_pred             HHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence            9999999999887555555777777888889999999999998877542 245788888999999999999999998876


Q ss_pred             HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHH-HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC
Q 002761          236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE-TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK  314 (883)
Q Consensus       236 ~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~-tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~  314 (883)
                      .  ..|+..+|.--++.---.+..++|.+++++..+    ..|+.. .|-.+-+.+-+.+   .++.|.+-|..=.+   
T Consensus       646 ~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk----~fp~f~Kl~lmlGQi~e~~~---~ie~aR~aY~~G~k---  713 (913)
T KOG0495|consen  646 S--ISGTERVWMKSANLERYLDNVEEALRLLEEALK----SFPDFHKLWLMLGQIEEQME---NIEMAREAYLQGTK---  713 (913)
T ss_pred             c--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH----hCCchHHHHHHHhHHHHHHH---HHHHHHHHHHhccc---
Confidence            5  457777777777777778899999999987662    245543 4555566677778   55677766665433   


Q ss_pred             CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761          315 RLQPNVKT-YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN  393 (883)
Q Consensus       315 gi~Pd~~T-y~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~G  393 (883)
                       ..|+..- |..|..-=-+.|.+-.|..+|+..+-++.....         .|-..|.+=.+.|+.+.|..+..+-++.-
T Consensus       714 -~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~---------lwle~Ir~ElR~gn~~~a~~lmakALQec  783 (913)
T KOG0495|consen  714 -KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL---------LWLESIRMELRAGNKEQAELLMAKALQEC  783 (913)
T ss_pred             -cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch---------hHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence             4566554 444555566788999999999998866554444         37789999999999999999988887764


Q ss_pred             CCCCCcceehhhhHHHHHHH---------HhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCc-cce
Q 002761          394 QPVPPRAMILSRKYRTLVSS---------WIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDA-VGF  463 (883)
Q Consensus       394 i~i~p~~~~~~~~y~~Ll~~---------~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~-~~~  463 (883)
                         |.+..+    |..-|--         .+..+....|..-+.=.+++.+-....++.|..||.+-.  .+.||. ++|
T Consensus       784 ---p~sg~L----WaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Rav--k~d~d~GD~w  854 (913)
T KOG0495|consen  784 ---PSSGLL----WAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAV--KKDPDNGDAW  854 (913)
T ss_pred             ---Cccchh----HHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH--ccCCccchHH
Confidence               444332    2111110         001111111211122234555556777899999998543  344543 335


Q ss_pred             eccchHHHHHHHH-HHhhchHHHHHHHHHH
Q 002761          464 IYSNPMETSFKQR-CLEDGKKYHRKLLRTL  492 (883)
Q Consensus       464 ty~~li~~~l~~~-c~~g~~~~A~~Ll~eM  492 (883)
                             +.+..+ .+.|..+.-..++...
T Consensus       855 -------a~fykfel~hG~eed~kev~~~c  877 (913)
T KOG0495|consen  855 -------AWFYKFELRHGTEEDQKEVLKKC  877 (913)
T ss_pred             -------HHHHHHHHHhCCHHHHHHHHHHH
Confidence                   333333 3444444445555444

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.48  E-value=5.7e-05  Score=87.96  Aligned_cols=241  Identities=15%  Similarity=0.084  Sum_probs=174.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-C
Q 002761          104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSA-----GV-RPLHET-LIALARLFGSKGLATKGLEILAAMEKI-----N-Y  170 (883)
Q Consensus       104 ~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~-----Gi-~Pd~~t-y~~LI~a~~~~g~~~~A~~l~~~m~~~-----g-~  170 (883)
                      ..+...|-..|...|+++.|..+++.-.+.     |. .|...+ .+.+-..|...+.+.+|..+|..+..-     | -
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            345666889999999999999999886543     31 233333 344667888899999999999988752     2 2


Q ss_pred             ChhH--HHHHHHHHHHHCCCHHHHHHHHHHHHh-----CCC-CCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHc---C
Q 002761          171 DIRQ--AWLILVEELVRNKYLEDANKVFLRGAK-----GGL-RATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAA---G  238 (883)
Q Consensus       171 ~pdv--tyn~LI~~y~k~G~~eeA~~lf~~M~~-----~gi-~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~~~---G  238 (883)
                      .|.+  +++.|-..|++.|++.+|...+++..+     .|. .|.+ .-++.+...|+..+++++|..+++...+.   -
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence            3444  788888899999999998888876542     122 2333 45777888899999999999999866432   1


Q ss_pred             CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHchh----CCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHh
Q 002761          239 RMAT----TFHFNHLLSCQATCGIPEVAFATFENMEY----GEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMM  309 (883)
Q Consensus       239 ~~Pd----~~tyn~LI~~y~k~G~~e~A~~lf~~M~~----g~~gi~p-d~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M  309 (883)
                      +.++    .-+++.|-..|-+.|++++|.++|++..+    +..+..+ .-...|-|-..|.+.+.+.   +|.++|.+-
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~---~a~~l~~~~  435 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE---EAEQLFEEA  435 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc---hHHHHHHHH
Confidence            2222    35789999999999999999999998764    1111122 2456778888998888544   777777763


Q ss_pred             HhccCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002761          310 VEDHKRLQPN----VKTYALLVECFTKYCAVTEAIRHFRALQ  347 (883)
Q Consensus       310 ~~~~~gi~Pd----~~Ty~~LI~a~~k~G~~eeA~~lf~~M~  347 (883)
                      ..-.+-+.|+    ..||..|...|...|+++.|.++.....
T Consensus       436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            2110123333    3678899999999999999999998876

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.47  E-value=0.00036  Score=76.93  Aligned_cols=255  Identities=17%  Similarity=0.099  Sum_probs=199.7

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002761           78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK  157 (883)
Q Consensus        78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~  157 (883)
                      +.-..|+.+.+-..+.+..+.--.++...+-+.-......|+...|..-..++.+.+.. +........++|.+.|++..
T Consensus       127 AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~  205 (400)
T COG3071         127 AAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQA  205 (400)
T ss_pred             HHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHH
Confidence            34567999999999999987644677788888888899999999999999998876543 56778999999999999999


Q ss_pred             HHHHHHHHHHcCCChh-------H-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 002761          158 GLEILAAMEKINYDIR-------Q-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALE  229 (883)
Q Consensus       158 A~~l~~~m~~~g~~pd-------v-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~  229 (883)
                      ...+...|.+.|.-.+       . +|+.+++-....+..+.-...++....+ .+-+...-.+++.-+.+.|+.++|.+
T Consensus       206 ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~  284 (400)
T COG3071         206 LLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQE  284 (400)
T ss_pred             HHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHH
Confidence            9999999999987654       3 7888887777777666666667666542 33455666788889999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHh
Q 002761          230 IAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM  309 (883)
Q Consensus       230 lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M  309 (883)
                      +..+-.+.+..|+..++    -.+.+-++.+.=.+..+.-.. ..+..|  -.+.+|-.-|.+++   .+.+|-..|+.-
T Consensus       285 ~i~~~Lk~~~D~~L~~~----~~~l~~~d~~~l~k~~e~~l~-~h~~~p--~L~~tLG~L~~k~~---~w~kA~~~leaA  354 (400)
T COG3071         285 IIEDALKRQWDPRLCRL----IPRLRPGDPEPLIKAAEKWLK-QHPEDP--LLLSTLGRLALKNK---LWGKASEALEAA  354 (400)
T ss_pred             HHHHHHHhccChhHHHH----HhhcCCCCchHHHHHHHHHHH-hCCCCh--hHHHHHHHHHHHhh---HHHHHHHHHHHH
Confidence            99999999888872222    234455555554544444331 333445  66778888999999   667888888877


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002761          310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN  348 (883)
Q Consensus       310 ~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~  348 (883)
                      .+    .+|+..+|+-+-.+|.+.|+..+|.+++++...
T Consensus       355 l~----~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         355 LK----LRPSASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             Hh----cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            65    789999999999999999999999999988764

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.45  E-value=4.5e-05  Score=88.52  Aligned_cols=281  Identities=14%  Similarity=0.043  Sum_probs=208.5

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002761           83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAG--VRPLHETLIALARLFGSKGLATKGLE  160 (883)
Q Consensus        83 G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~G--i~Pd~~ty~~LI~a~~~~g~~~~A~~  160 (883)
                      -+..+|...|...+..- .-+......+-.+|...+++++|.++|+..++..  ..-+..+|++++-.+-+.    -++.
T Consensus       333 y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls  407 (638)
T KOG1126|consen  333 YNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS  407 (638)
T ss_pred             HHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence            44578999999966542 2233566677788999999999999999987653  223677899888766432    2222


Q ss_pred             HHH-HHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761          161 ILA-AMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA-TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG  238 (883)
Q Consensus       161 l~~-~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~p-d~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G  238 (883)
                      .+. .+.........+|.++-++|.-.++.+.|.+.|++..+  +.| ..++|+.+-.-+.....++.|...|+....  
T Consensus       408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--  483 (638)
T KOG1126|consen  408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--  483 (638)
T ss_pred             HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence            222 23333222224999999999999999999999999887  446 568999888888999999999999987654  


Q ss_pred             CCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCC
Q 002761          239 RMATTFHFNH---LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR  315 (883)
Q Consensus       239 ~~Pd~~tyn~---LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~g  315 (883)
                        .|...||+   |--.|.|.++++.|.--|+...+  - -+.+.+.-..+...+-+.|   +.++|+++|++...    
T Consensus       484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--I-NP~nsvi~~~~g~~~~~~k---~~d~AL~~~~~A~~----  551 (638)
T KOG1126|consen  484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--I-NPSNSVILCHIGRIQHQLK---RKDKALQLYEKAIH----  551 (638)
T ss_pred             --CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--C-CccchhHHhhhhHHHHHhh---hhhHHHHHHHHHHh----
Confidence              46667776   45569999999999999998772  1 1346677777778888889   66699999999875    


Q ss_pred             CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761          316 LQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN  393 (883)
Q Consensus       316 i~P-d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~G  393 (883)
                      +.| |..+----...+...++.++|++.+++++..-.....         .|-.+...|-+.|+.+.|+.-|--|....
T Consensus       552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~---------v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESS---------VFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHH---------HHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            344 3333333445566789999999999999874333333         36688999999999999999998887665

>PF12854 PPR_1: PPR repeat

Probab=98.45  E-value=2.1e-07  Score=67.76  Aligned_cols=34  Identities=32%  Similarity=0.477  Sum_probs=26.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002761          202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME  235 (883)
Q Consensus       202 ~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~  235 (883)
                      +|+.||.+|||+||++||+.|++++|.++|++|.
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            3677888888888888888888888888887773

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.43  E-value=0.00015  Score=77.78  Aligned_cols=183  Identities=12%  Similarity=0.141  Sum_probs=98.3

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002761           82 NRDAPRVNDVIYDMIAAGLSPGP------RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA  155 (883)
Q Consensus        82 ~G~~~~A~~lf~~M~~~G~~pd~------~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~  155 (883)
                      .|.++.|.++...+..+   ||.      ...-.|-.-|...|-++.|..+|..+...|-- -......|+..|-...+|
T Consensus        82 RGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW  157 (389)
T COG2956          82 RGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREW  157 (389)
T ss_pred             cchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHH
Confidence            35566666666655552   321      23334445555566666666666665543311 123445566666666666


Q ss_pred             HHHHHHHHHHHHcCCChh---H--HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCChHHHHH
Q 002761          156 TKGLEILAAMEKINYDIR---Q--AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD-LMIAEDCKAGDHSNALE  229 (883)
Q Consensus       156 ~~A~~l~~~m~~~g~~pd---v--tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn-~LI~a~~k~g~~eeA~~  229 (883)
                      ++|..+-.++.+.+-.+.   +  .|.-|-..+....+++.|..++.+..+.+  |+.+--+ .+-+.+...|+++.|.+
T Consensus       158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~  235 (389)
T COG2956         158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVE  235 (389)
T ss_pred             HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHH
Confidence            666666666655543332   1  35555555555666666666666655432  2222222 23344555666666666


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761          230 IAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME  270 (883)
Q Consensus       230 lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~  270 (883)
                      .++...+.+..--..+...|..+|.+.|+.++....+..+.
T Consensus       236 ~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~  276 (389)
T COG2956         236 ALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM  276 (389)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            66666655444444455666666666666666666665554

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.39  E-value=0.004  Score=69.98  Aligned_cols=337  Identities=13%  Similarity=0.050  Sum_probs=204.4

Q ss_pred             CCHHHHHHHHHHHHhCCChhhHHHHHHcCCCCChhHHHHHHHHHHccCChH--HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 002761           21 TGVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLI--FMEELMQHARNRDAPRVNDVIYDMIAA   98 (883)
Q Consensus        21 pd~~syn~LI~~~~k~g~~~~A~~M~~~gv~Pd~~ty~~ll~a~~~~~~~~--~~~~L~~~~k~G~~~~A~~lf~~M~~~   98 (883)
                      +++..|--.+..=-++..+..|..+++.              +.....+++  +.+-++.--..|++..|.++|+.-...
T Consensus       105 r~itLWlkYae~Emknk~vNhARNv~dR--------------Avt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w  170 (677)
T KOG1915|consen  105 RNITLWLKYAEFEMKNKQVNHARNVWDR--------------AVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW  170 (677)
T ss_pred             ccchHHHHHHHHHHhhhhHhHHHHHHHH--------------HHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC
Confidence            4444555555555666666666555542              221122211  222233444569999999999988754


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCChh--HH
Q 002761           99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKI-NYDIR--QA  175 (883)
Q Consensus        99 G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~-g~~pd--vt  175 (883)
                        .|+...|++.|.-=.+-+.++.|..++.+..-  +.|++.+|.-..+.=-+.|.+..|+++|...+.. |-.-.  ..
T Consensus       171 --~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~l  246 (677)
T KOG1915|consen  171 --EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEIL  246 (677)
T ss_pred             --CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHH
Confidence              89999999999999999999999999999875  4589888888877777888888888887766542 11000  01


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHH--------------------------------------------HhCCCCCCHHHH
Q 002761          176 WLILVEELVRNKYLEDANKVFLRG--------------------------------------------AKGGLRATDEIY  211 (883)
Q Consensus       176 yn~LI~~y~k~G~~eeA~~lf~~M--------------------------------------------~~~gi~pd~~ty  211 (883)
                      +++.-.-=.++..++.|.-+|.-.                                            .+. -+-|--+|
T Consensus       247 fvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsW  325 (677)
T KOG1915|consen  247 FVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSW  325 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHH
Confidence            222221111222222222222110                                            000 11222334


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHc-------------------------------------------CCCCCHHHHHH
Q 002761          212 DLMIAEDCKAGDHSNALEIAYEMEAA-------------------------------------------GRMATTFHFNH  248 (883)
Q Consensus       212 n~LI~a~~k~g~~eeA~~lf~~M~~~-------------------------------------------G~~Pd~~tyn~  248 (883)
                      --.+.---..|+.+...++|+.....                                           =++-..+||.-
T Consensus       326 fdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaK  405 (677)
T KOG1915|consen  326 FDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAK  405 (677)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHH
Confidence            33444444444444444444444432                                           12223455555


Q ss_pred             HHHHHH----HcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHH
Q 002761          249 LLSCQA----TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTY  323 (883)
Q Consensus       249 LI~~y~----k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P-d~~Ty  323 (883)
                      +=-+|+    ++-++..|.+++....    |..|-.-+|..-|..=.+.+.+|   .+..++.+-++    +.| |..+|
T Consensus       406 iWlmyA~feIRq~~l~~ARkiLG~AI----G~cPK~KlFk~YIelElqL~efD---RcRkLYEkfle----~~Pe~c~~W  474 (677)
T KOG1915|consen  406 IWLMYAQFEIRQLNLTGARKILGNAI----GKCPKDKLFKGYIELELQLREFD---RCRKLYEKFLE----FSPENCYAW  474 (677)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHh----ccCCchhHHHHHHHHHHHHhhHH---HHHHHHHHHHh----cChHhhHHH
Confidence            544554    4566677777766544    55677777777777777777444   66667777765    344 56667


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 002761          324 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ  394 (883)
Q Consensus       324 ~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi  394 (883)
                      .-.-.-=...|+.+.|..+|....+.+.......       .|-+.|+-=...|.++.|..+++++++..-
T Consensus       475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel-------lwkaYIdFEi~~~E~ekaR~LYerlL~rt~  538 (677)
T KOG1915|consen  475 SKYAELETSLGDTDRARAIFELAISQPALDMPEL-------LWKAYIDFEIEEGEFEKARALYERLLDRTQ  538 (677)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH-------HHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence            6666666677888888888888776443111111       477888888899999999999999988764

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.36  E-value=0.00011  Score=85.69  Aligned_cols=242  Identities=14%  Similarity=0.079  Sum_probs=176.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-ChhH--HHHHHHHHHHHCCCHHHHHHHHHHHHh-----CC-C
Q 002761          139 HETLIALARLFGSKGLATKGLEILAAMEKI-----NY-DIRQ--AWLILVEELVRNKYLEDANKVFLRGAK-----GG-L  204 (883)
Q Consensus       139 ~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~-----g~-~pdv--tyn~LI~~y~k~G~~eeA~~lf~~M~~-----~g-i  204 (883)
                      ..|...|...|...|+++.|..++....+.     |. .|.+  ..+.+-..|...+++.+|..+|+++..     .| .
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            456677999999999999999999988764     32 2333  456677789999999999999999864     12 2


Q ss_pred             CCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHchh-CCCC
Q 002761          205 RATD-EIYDLMIAEDCKAGDHSNALEIAYEMEA-----AGR-MATTF-HFNHLLSCQATCGIPEVAFATFENMEY-GEDY  275 (883)
Q Consensus       205 ~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~~-----~G~-~Pd~~-tyn~LI~~y~k~G~~e~A~~lf~~M~~-g~~g  275 (883)
                      .|.+ .+++.|-.+|++.|++++|...++...+     .|. .|.+. -++.+...|+..+.+++|..++..... -..-
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence            2333 6888888999999999998887776542     122 22332 356777889999999999998886542 0011


Q ss_pred             CCCC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhcc--C--CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002761          276 MKPD----TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH--K--RLQPN-VKTYALLVECFTKYCAVTEAIRHFRAL  346 (883)
Q Consensus       276 i~pd----~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~--~--gi~Pd-~~Ty~~LI~a~~k~G~~eeA~~lf~~M  346 (883)
                      +.++    .-+|+.|-..|.+.|   +..+|.++|++.+...  .  +..+. ...++-|-..|.+.+.+++|.++|.+-
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~g---k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~  435 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMG---KYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA  435 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            1222    357999999999999   6669999998876420  1  11222 345677778999999999999999887


Q ss_pred             HhC----CC-CCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002761          347 QNY----EG-GTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA  390 (883)
Q Consensus       347 ~~~----~~-~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~  390 (883)
                      ...    |. .|++..       +|..|...|.+.|+++.|.++.+...
T Consensus       436 ~~i~~~~g~~~~~~~~-------~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  436 KDIMKLCGPDHPDVTY-------TYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHhCCCCCchHH-------HHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            642    21 223322       79999999999999999999998875

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=0.00071  Score=75.75  Aligned_cols=288  Identities=9%  Similarity=-0.008  Sum_probs=209.6

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHH
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV--RPLHETLIALARLFGSKGLAT  156 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi--~Pd~~ty~~LI~a~~~~g~~~  156 (883)
                      +-.....+++..=.......|++-+...-+..-.+.-...+++.|..+|++..+...  --|..||+.++-.--....+.
T Consensus       237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs  316 (559)
T KOG1155|consen  237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS  316 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence            444457788888888888888744444434444444566899999999999988731  126778888775543322222


Q ss_pred             -HHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002761          157 -KGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEM  234 (883)
Q Consensus       157 -~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M  234 (883)
                       .|..++ .  -..+.| .|+.++-+-|+-.++.+.|...|++..+.+  |. ...|+.|-.-|....+...|.+-++..
T Consensus       317 ~LA~~v~-~--idKyR~-ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA  390 (559)
T KOG1155|consen  317 YLAQNVS-N--IDKYRP-ETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRA  390 (559)
T ss_pred             HHHHHHH-H--hccCCc-cceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence             122211 1  122333 277788889999999999999999988743  44 478999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC
Q 002761          235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK  314 (883)
Q Consensus       235 ~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~  314 (883)
                      .+-+ +.|-..|-.|-.+|.-.+...-|+-.|++...   --+-|...|.+|-..|.+.+   +.++|++.|.....   
T Consensus       391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~---~~~eAiKCykrai~---  460 (559)
T KOG1155|consen  391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLN---RLEEAIKCYKRAIL---  460 (559)
T ss_pred             HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhc---cHHHHHHHHHHHHh---
Confidence            8864 44888999999999999999999999998762   11448899999999999999   77799999999987   


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002761          315 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE-----GGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM  389 (883)
Q Consensus       315 gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~-----~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M  389 (883)
                      .-..+...+..|-..|-+.++..+|.+.|..-.+..     ..+..+.       .---|-.-+-+.+++++|.......
T Consensus       461 ~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~k-------a~~fLA~~f~k~~~~~~As~Ya~~~  533 (559)
T KOG1155|consen  461 LGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIK-------ARLFLAEYFKKMKDFDEASYYATLV  533 (559)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHH-------HHHHHHHHHHhhcchHHHHHHHHHH
Confidence            334467889999999999999999999998876521     1111110       0112455567778888777655444

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.31  E-value=0.00019  Score=79.40  Aligned_cols=259  Identities=14%  Similarity=0.126  Sum_probs=180.2

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002761           78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLV-VAYTLN-GDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA  155 (883)
Q Consensus        78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI-~a~~~~-g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~  155 (883)
                      .+.++|+++.|.+++.-..+..-..-...-|.|- -.|.+. .++..|...-+...... +-|....+.--+.....|++
T Consensus       428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~  506 (840)
T KOG2003|consen  428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL  506 (840)
T ss_pred             HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence            4889999999999998887543222222222222 223333 35666766655443221 11222222222223456899


Q ss_pred             HHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002761          156 TKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM  234 (883)
Q Consensus       156 ~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M  234 (883)
                      +.|.+.+.+.+...-.... .||+=+ .+-+.|++++|+..|-++..- +.-+....-.+.+.|-...+...|.+++-+.
T Consensus       507 dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~  584 (840)
T KOG2003|consen  507 DKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA  584 (840)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence            9999999999887655544 555433 467789999999999887541 1134455666777888888899998887554


Q ss_pred             HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC
Q 002761          235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK  314 (883)
Q Consensus       235 ~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~  314 (883)
                      ... ++-|..+.+-|-+.|-+.|+-..|++.+-.--   +-++-|..|...|-.-|....   -.++++.+|++..    
T Consensus       585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy---ryfp~nie~iewl~ayyidtq---f~ekai~y~ekaa----  653 (840)
T KOG2003|consen  585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY---RYFPCNIETIEWLAAYYIDTQ---FSEKAINYFEKAA----  653 (840)
T ss_pred             ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc---cccCcchHHHHHHHHHHHhhH---HHHHHHHHHHHHH----
Confidence            332 44467888999999999999999998775533   345668888887888888877   5679999999874    


Q ss_pred             CCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhCC
Q 002761          315 RLQPNVKTYALLVE-CFTKYCAVTEAIRHFRALQNYE  350 (883)
Q Consensus       315 gi~Pd~~Ty~~LI~-a~~k~G~~eeA~~lf~~M~~~~  350 (883)
                      -++|+..-|..+|. |+-+.|++.+|+.+++.+.++.
T Consensus       654 liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf  690 (840)
T KOG2003|consen  654 LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF  690 (840)
T ss_pred             hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            48999999998886 5567899999999999998654

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.27  E-value=0.00039  Score=76.63  Aligned_cols=227  Identities=13%  Similarity=0.021  Sum_probs=155.9

Q ss_pred             HcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHH
Q 002761          116 LNGDHEGAMHSLKRELSAG-VRPL--HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDA  192 (883)
Q Consensus       116 ~~g~~~~A~~lf~~M~~~G-i~Pd--~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA  192 (883)
                      ..+..+.++.-+.++.... +.|+  ...|..+-..+.+.|+.+.|...|.+..+........|+.+-..|...|++++|
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            3456677888888887543 3333  345777777889999999999999999987654334999999999999999999


Q ss_pred             HHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 002761          193 NKVFLRGAKGGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY  271 (883)
Q Consensus       193 ~~lf~~M~~~gi~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~  271 (883)
                      ...|+...+  +.|+ ..+|..+...+...|++++|.+.|+...+..  |+..........+...++.++|...|.....
T Consensus       118 ~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~  193 (296)
T PRK11189        118 YEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE  193 (296)
T ss_pred             HHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            999999987  3454 4788888888999999999999999988753  4433222222334456789999999976541


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhcc-CC--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002761          272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH-KR--LQP-NVKTYALLVECFTKYCAVTEAIRHFRALQ  347 (883)
Q Consensus       272 g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~-~g--i~P-d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~  347 (883)
                        . ..|+...| .  ..+...|+.+   ++ +.|..+.+.. ..  +.| ...+|..+-..+.+.|++++|...|+...
T Consensus       194 --~-~~~~~~~~-~--~~~~~lg~~~---~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al  263 (296)
T PRK11189        194 --K-LDKEQWGW-N--IVEFYLGKIS---EE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL  263 (296)
T ss_pred             --h-CCccccHH-H--HHHHHccCCC---HH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence              1 13332222 2  2233455443   22 3444554310 01  111 22467788889999999999999999998


Q ss_pred             hCCCCCccc
Q 002761          348 NYEGGTKVL  356 (883)
Q Consensus       348 ~~~~~~~~~  356 (883)
                      ...+...+.
T Consensus       264 ~~~~~~~~e  272 (296)
T PRK11189        264 ANNVYNFVE  272 (296)
T ss_pred             HhCCchHHH
Confidence            755444333

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.23  E-value=0.0011  Score=73.12  Aligned_cols=231  Identities=14%  Similarity=0.071  Sum_probs=158.2

Q ss_pred             cCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002761           82 NRDAPRVNDVIYDMIAAG-LSPG--PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG  158 (883)
Q Consensus        82 ~G~~~~A~~lf~~M~~~G-~~pd--~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A  158 (883)
                      .+..+.+..-+.++.... +.|+  ...|..+-..|.+.|+.++|...|++..... +.+...|+.+-..+...|+++.|
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence            345577777777777543 2332  3567778888999999999999999988753 23578899999999999999999


Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761          159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG  238 (883)
Q Consensus       159 ~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G  238 (883)
                      ...|+...+.......+|..+...|...|++++|.+.|+...+.  .|+..........+...+++++|...|.......
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            99999999876544448888889999999999999999998874  3544322222222345678999999997755432


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC-CCC--CC-CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC
Q 002761          239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYG-EDY--MK-PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK  314 (883)
Q Consensus       239 ~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g-~~g--i~-pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~  314 (883)
                       .|+...+ .+.  +...|+...+ ..|..+.++ +..  +. .....|..+-..|.+.|   +.++|+..|++...   
T Consensus       196 -~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g---~~~~A~~~~~~Al~---  264 (296)
T PRK11189        196 -DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLG---DLDEAAALFKLALA---  264 (296)
T ss_pred             -CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH---
Confidence             3332222 222  3335555444 344444410 000  11 13457888999999999   66699999999987   


Q ss_pred             CCCCCHHHHHHH
Q 002761          315 RLQPNVKTYALL  326 (883)
Q Consensus       315 gi~Pd~~Ty~~L  326 (883)
                      .-.||.+-+...
T Consensus       265 ~~~~~~~e~~~~  276 (296)
T PRK11189        265 NNVYNFVEHRYA  276 (296)
T ss_pred             hCCchHHHHHHH
Confidence            334566555443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.22  E-value=0.0013  Score=77.47  Aligned_cols=259  Identities=15%  Similarity=0.088  Sum_probs=171.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCC----
Q 002761          113 AYTLNGDHEGAMHSLKRELSAGVRPLHE-TLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNK----  187 (883)
Q Consensus       113 a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~-ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G----  187 (883)
                      .+...|++++|++.+..-.  +.-+|.. .+......+.+.|+.++|..++..+++++.....-|..|..+..-..    
T Consensus        13 il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~   90 (517)
T PF12569_consen   13 ILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD   90 (517)
T ss_pred             HHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence            3467788888888886532  2334544 44566777788888888888888888887543335566666653332    


Q ss_pred             -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002761          188 -YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH-SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT  265 (883)
Q Consensus       188 -~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~-eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~l  265 (883)
                       ..+....+|+++...-  |...+.-.+.-.+.....+ ..+...+..+..+|++   .+|+.|-..|.......-...+
T Consensus        91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l  165 (517)
T PF12569_consen   91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL  165 (517)
T ss_pred             ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence             4666777888776532  3333332232222222223 3445566777788865   4677777777766666666666


Q ss_pred             HHHchhC--C----------CCCCCCHHHH--HHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHH
Q 002761          266 FENMEYG--E----------DYMKPDTETY--NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECF  330 (883)
Q Consensus       266 f~~M~~g--~----------~gi~pd~~ty--n~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~~Ty~~LI~a~  330 (883)
                      +......  .          ..-.|....|  .-+...|-..|   +.++|++++++.++    ..|+ +-.|..--..|
T Consensus       166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g---~~~~Al~~Id~aI~----htPt~~ely~~Karil  238 (517)
T PF12569_consen  166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG---DYEKALEYIDKAIE----HTPTLVELYMTKARIL  238 (517)
T ss_pred             HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHh----cCCCcHHHHHHHHHHH
Confidence            6654420  0          0123555444  55677788899   55699999999987    5677 45566667889


Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 002761          331 TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ  394 (883)
Q Consensus       331 ~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi  394 (883)
                      -+.|++.+|....+..+........+         =+-.+.-+.|+|++++|.+++......+.
T Consensus       239 Kh~G~~~~Aa~~~~~Ar~LD~~DRyi---------NsK~aKy~LRa~~~e~A~~~~~~Ftr~~~  293 (517)
T PF12569_consen  239 KHAGDLKEAAEAMDEARELDLADRYI---------NSKCAKYLLRAGRIEEAEKTASLFTREDV  293 (517)
T ss_pred             HHCCCHHHHHHHHHHHHhCChhhHHH---------HHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence            99999999999999998765544333         24567788999999999999999987775

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.17  E-value=0.016  Score=67.50  Aligned_cols=336  Identities=11%  Similarity=0.071  Sum_probs=178.6

Q ss_pred             CCCCChhHHHHHHHHHHccCCh------HHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHH
Q 002761           49 HGDSLLSTNGSVVSAAEQGLRL------IFMEELMQHARNRDAPRVNDVIYDMIAA-GLSPGPRSFHGLVVAYTLNGDHE  121 (883)
Q Consensus        49 gv~Pd~~ty~~ll~a~~~~~~~------~~~~~L~~~~k~G~~~~A~~lf~~M~~~-G~~pd~~tyn~LI~a~~~~g~~~  121 (883)
                      +..|....|.++=+.+.++-.+      -+..-+....+.|++......|+..... -+......|...|.-.-..|-++
T Consensus        76 ~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPe  155 (835)
T KOG2047|consen   76 HLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPE  155 (835)
T ss_pred             ccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChH
Confidence            6677777777776655444211      0111122355778888888888877653 23334456777777777778888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CC------------------------
Q 002761          122 GAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKI-------NY------------------------  170 (883)
Q Consensus       122 ~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~-------g~------------------------  170 (883)
                      -++.++++.++.    ++..-.--|.-+++.+++++|.+.+...+..       |-                        
T Consensus       156 ts~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln  231 (835)
T KOG2047|consen  156 TSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN  231 (835)
T ss_pred             HHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC
Confidence            888888877653    3334555666677777777777766655421       11                        


Q ss_pred             -----------Chh-H--HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH-----------
Q 002761          171 -----------DIR-Q--AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS-----------  225 (883)
Q Consensus       171 -----------~pd-v--tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~e-----------  225 (883)
                                 -+| .  .|++|-+-|.+.|+++.|..+|++-...-  .++.-|+.+.++|+.-..-.           
T Consensus       232 vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~  309 (835)
T KOG2047|consen  232 VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEE  309 (835)
T ss_pred             HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence                       111 1  45555555666666666666555544321  23334444444444211100           


Q ss_pred             -----------HHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCC-----
Q 002761          226 -----------NALEIAYEMEAAGR-----------MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-----  278 (883)
Q Consensus       226 -----------eA~~lf~~M~~~G~-----------~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~p-----  278 (883)
                                 -.+.-|+.+...+.           .-++.+|..-+.  +..|+..+-..+|.+..+   .+.|     
T Consensus       310 ~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~---~vdP~ka~G  384 (835)
T KOG2047|consen  310 SGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVK---TVDPKKAVG  384 (835)
T ss_pred             ccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHH---ccCcccCCC
Confidence                       00111111111100           001111111111  112344444455554441   1222     


Q ss_pred             -CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCc
Q 002761          279 -DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN---VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK  354 (883)
Q Consensus       279 -d~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd---~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~  354 (883)
                       -...|..+-.-|-.+|   ..+.|..+|.+..+  -..+--   ..+|..--..=.+..+++.|+++.+.....+..+.
T Consensus       385 s~~~Lw~~faklYe~~~---~l~~aRvifeka~~--V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~  459 (835)
T KOG2047|consen  385 SPGTLWVEFAKLYENNG---DLDDARVIFEKATK--VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE  459 (835)
T ss_pred             ChhhHHHHHHHHHHhcC---cHHHHHHHHHHhhc--CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh
Confidence             1234777778888888   55588888888765  122111   12233333333455677777777666554333222


Q ss_pred             cccccCC---------CCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcce
Q 002761          355 VLHNEGN---------FGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAM  401 (883)
Q Consensus       355 ~~~~~~~---------~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~  401 (883)
                      +...-+.         ....|+..++..-..|-++....+|+++....+- +|..+
T Consensus       460 ~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii  514 (835)
T KOG2047|consen  460 LEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQII  514 (835)
T ss_pred             hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHH
Confidence            1111111         1117888889888999999999999999999883 66554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=0.011  Score=67.06  Aligned_cols=292  Identities=14%  Similarity=0.134  Sum_probs=174.6

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCH
Q 002761           78 QHARNRDAPRVNDVIYDMIAAGLSPG-PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE-TLIALARLFGSKGLA  155 (883)
Q Consensus        78 ~~~k~G~~~~A~~lf~~M~~~G~~pd-~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~-ty~~LI~a~~~~g~~  155 (883)
                      .+.++|.+++|.+.+.+....  .|| ++.|...-.+|...|+++++.+--.+.++  +.|+.+ .+.---+++-..|++
T Consensus       124 ~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg~~  199 (606)
T KOG0547|consen  124 KFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLGKF  199 (606)
T ss_pred             hhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhccH
Confidence            377899999999999999875  688 88999999999999999988876655443  445422 233333344444444


Q ss_pred             HHH----------------------HHHHHHH--------HHcCCChhHHHHHHHHHHHHC------------CC-----
Q 002761          156 TKG----------------------LEILAAM--------EKINYDIRQAWLILVEELVRN------------KY-----  188 (883)
Q Consensus       156 ~~A----------------------~~l~~~m--------~~~g~~pdvtyn~LI~~y~k~------------G~-----  188 (883)
                      .+|                      .+++...        .+.+-.|...-++.|..|...            +.     
T Consensus       200 ~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~  279 (606)
T KOG0547|consen  200 DEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAA  279 (606)
T ss_pred             HHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhh
Confidence            433                      2222211        010111211222233333210            00     


Q ss_pred             HHHHHHHHHHHHhCC----------------CCCCHH---------HHHHHHHH--HHHcCChHHHHHHHHHHHHcCCCC
Q 002761          189 LEDANKVFLRGAKGG----------------LRATDE---------IYDLMIAE--DCKAGDHSNALEIAYEMEAAGRMA  241 (883)
Q Consensus       189 ~eeA~~lf~~M~~~g----------------i~pd~~---------tyn~LI~a--~~k~g~~eeA~~lf~~M~~~G~~P  241 (883)
                      +.++.+-+..-...|                ..++..         .-..++.|  +.-.|+.-.|...|+..+.....+
T Consensus       280 l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~  359 (606)
T KOG0547|consen  280 LAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF  359 (606)
T ss_pred             HHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc
Confidence            111111111110000                001111         11111111  223566677777777777664443


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-H
Q 002761          242 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-V  320 (883)
Q Consensus       242 d~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~  320 (883)
                      +. .|--+-.+|....+.++....|+.... -..-.||+.....=  .+.-.+   +.++|..=|++-+.    +.|+ .
T Consensus       360 ~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~-ldp~n~dvYyHRgQ--m~flL~---q~e~A~aDF~Kai~----L~pe~~  428 (606)
T KOG0547|consen  360 NS-LYIKRAAAYADENQSEKMWKDFNKAED-LDPENPDVYYHRGQ--MRFLLQ---QYEEAIADFQKAIS----LDPENA  428 (606)
T ss_pred             ch-HHHHHHHHHhhhhccHHHHHHHHHHHh-cCCCCCchhHhHHH--HHHHHH---HHHHHHHHHHHHhh----cChhhh
Confidence            33 266667778888888888888888763 12224455444333  333344   55688888888865    6664 5


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761          321 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN  393 (883)
Q Consensus       321 ~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~G  393 (883)
                      ..|.-+-.+.-+.+.+++++..|++.+++         +..|++.||..-..+...++++.|.+.|+.-.+.-
T Consensus       429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk---------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE  492 (606)
T KOG0547|consen  429 YAYIQLCCALYRQHKIAESMKTFEEAKKK---------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE  492 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence            56666666777889999999999999864         34566689999999999999999999999876553

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.15  E-value=0.00047  Score=76.33  Aligned_cols=88  Identities=16%  Similarity=0.135  Sum_probs=59.2

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSP----GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL  154 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G~~p----d~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~  154 (883)
                      |.+...+..|.+.++-....-...    -....|.+-..+.+.|.++.|+.-|+...+.  .||-.+--.|+-++...|+
T Consensus       247 ~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d  324 (840)
T KOG2003|consen  247 HFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGD  324 (840)
T ss_pred             eeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCc
Confidence            777778888888776555431111    1234555666677888888888888776653  5777665555555556788


Q ss_pred             HHHHHHHHHHHHHc
Q 002761          155 ATKGLEILAAMEKI  168 (883)
Q Consensus       155 ~~~A~~l~~~m~~~  168 (883)
                      -+...+.|..|+..
T Consensus       325 ~ekmkeaf~kli~i  338 (840)
T KOG2003|consen  325 AEKMKEAFQKLIDI  338 (840)
T ss_pred             HHHHHHHHHHHhcC
Confidence            88888888888753

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.11  E-value=0.011  Score=66.41  Aligned_cols=261  Identities=13%  Similarity=-0.034  Sum_probs=161.9

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 002761           78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTL----NGDHEGAMHSLKRELSAGVRPL-HETLIALARLFGSK  152 (883)
Q Consensus        78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~----~g~~~~A~~lf~~M~~~Gi~Pd-~~ty~~LI~a~~~~  152 (883)
                      .+...|+++.|..++++..+.. +.+...++. ...+..    .+....+.+.+..  .....|+ ......+...+...
T Consensus        52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~  127 (355)
T cd05804          52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEA  127 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHc
Confidence            3556799999999999988753 334445553 222222    3455555555544  2223344 33445666788899


Q ss_pred             CCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHHcCChHHHHH
Q 002761          153 GLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL-RATD--EIYDLMIAEDCKAGDHSNALE  229 (883)
Q Consensus       153 g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi-~pd~--~tyn~LI~a~~k~g~~eeA~~  229 (883)
                      |++++|...+++..+........+..+-..|...|++++|...+++.....- .|+.  ..|..+...+...|++++|..
T Consensus       128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~  207 (355)
T cd05804         128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA  207 (355)
T ss_pred             CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence            9999999999999997644333788899999999999999999998876421 2333  356678888999999999999


Q ss_pred             HHHHHHHcCC-CCCHHHH-H--HHHHHHHHcCCHHHHHHH---HHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHH
Q 002761          230 IAYEMEAAGR-MATTFHF-N--HLLSCQATCGIPEVAFAT---FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV  302 (883)
Q Consensus       230 lf~~M~~~G~-~Pd~~ty-n--~LI~~y~k~G~~e~A~~l---f~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eA  302 (883)
                      +|+....... .+..... +  .++.-+...|....+.+.   ...-.....+ ....+..-....++...|   +..+|
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~---~~~~a  283 (355)
T cd05804         208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAG---DKDAL  283 (355)
T ss_pred             HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCC---CHHHH
Confidence            9999864432 2222222 2  334444455544433333   2221100011 111122235666777778   56688


Q ss_pred             HHHHHHhHhccCCCCC--CH----HHHHHHHH--HHHHcCCHHHHHHHHHHHHh
Q 002761          303 AELLGMMVEDHKRLQP--NV----KTYALLVE--CFTKYCAVTEAIRHFRALQN  348 (883)
Q Consensus       303 l~lf~~M~~~~~gi~P--d~----~Ty~~LI~--a~~k~G~~eeA~~lf~~M~~  348 (883)
                      ..++..+...  ...+  ..    .+-..++.  ++...|+.++|...+.....
T Consensus       284 ~~~L~~l~~~--~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~  335 (355)
T cd05804         284 DKLLAALKGR--ASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD  335 (355)
T ss_pred             HHHHHHHHHH--HhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8888888652  1110  11    11122333  56689999999999987764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.09  E-value=0.046  Score=63.83  Aligned_cols=317  Identities=11%  Similarity=0.102  Sum_probs=193.7

Q ss_pred             HHHHHHHHHHHHhCCChhhHHHHHHcCCC--CChhHHHHHHHHHHccCChHHHHHHH-HHHhcCC------hHHHHHHHH
Q 002761           23 VVPIRSAMSSPEKKTRRKKQQRRQQKHGD--SLLSTNGSVVSAAEQGLRLIFMEELM-QHARNRD------APRVNDVIY   93 (883)
Q Consensus        23 ~~syn~LI~~~~k~g~~~~A~~M~~~gv~--Pd~~ty~~ll~a~~~~~~~~~~~~L~-~~~k~G~------~~~A~~lf~   93 (883)
                      -.-|++|.+-|.+.|++++|....+.++.  -.+..|+.+.++|+..........+- +-...|+      ++-.+.-|+
T Consensus       248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e  327 (835)
T KOG2047|consen  248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE  327 (835)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence            46799999999999999999877776543  45556778888876543322222222 1112222      233444455


Q ss_pred             HHHHCC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHH
Q 002761           94 DMIAAG-----------LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL------HETLIALARLFGSKGLAT  156 (883)
Q Consensus        94 ~M~~~G-----------~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd------~~ty~~LI~a~~~~g~~~  156 (883)
                      .+...+           -+-++.+|..-+..  ..|+..+-...|.+.... +.|-      ...|..+-+.|-..|+++
T Consensus       328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~  404 (835)
T KOG2047|consen  328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLD  404 (835)
T ss_pred             HHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence            544332           12344555554443  356677778888777653 3332      235788888999999999


Q ss_pred             HHHHHHHHHHHcCCChh---H-HHHHHHHHHHHCCCHHHHHHHHHHHHhC-----------CCCC------CHHHHHHHH
Q 002761          157 KGLEILAAMEKINYDIR---Q-AWLILVEELVRNKYLEDANKVFLRGAKG-----------GLRA------TDEIYDLMI  215 (883)
Q Consensus       157 ~A~~l~~~m~~~g~~pd---v-tyn~LI~~y~k~G~~eeA~~lf~~M~~~-----------gi~p------d~~tyn~LI  215 (883)
                      .|+.+|++..+-.+..-   . +|..--.+=.+..+++.|+++.+....-           +.++      +...|+..+
T Consensus       405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~  484 (835)
T KOG2047|consen  405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA  484 (835)
T ss_pred             HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence            99999999988665332   2 6666666667778888888887765321           1111      123455555


Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCH-HHHHHHHHHHHHcC
Q 002761          216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT-ETYNCVIQAYTRAE  294 (883)
Q Consensus       216 ~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~-~tyn~LI~ay~~~G  294 (883)
                      +---..|-++....+++.+.+..+..-...-|- -..+-...-+++|++++++=.  .---.|++ ..||+-+.-+.+.=
T Consensus       485 DleEs~gtfestk~vYdriidLriaTPqii~Ny-AmfLEeh~yfeesFk~YErgI--~LFk~p~v~diW~tYLtkfi~ry  561 (835)
T KOG2047|consen  485 DLEESLGTFESTKAVYDRIIDLRIATPQIIINY-AMFLEEHKYFEESFKAYERGI--SLFKWPNVYDIWNTYLTKFIKRY  561 (835)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhHHHHHHHHHHHcCC--ccCCCccHHHHHHHHHHHHHHHh
Confidence            555566777888888888887665422222221 111234456788888887644  22224554 35777666665532


Q ss_pred             CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHh
Q 002761          295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF--TKYCAVTEAIRHFRALQN  348 (883)
Q Consensus       295 ~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~--~k~G~~eeA~~lf~~M~~  348 (883)
                      .--+.+.|..||++.++   |+.|...-+--|+-+=  -+.|....|+.+++....
T Consensus       562 gg~klEraRdLFEqaL~---~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~  614 (835)
T KOG2047|consen  562 GGTKLERARDLFEQALD---GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS  614 (835)
T ss_pred             cCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            12267788899999886   7777665444444321  235888888888888653

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.06  E-value=0.0031  Score=74.38  Aligned_cols=290  Identities=12%  Similarity=0.027  Sum_probs=193.8

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-h-----
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPGP-RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG-S-----  151 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G~~pd~-~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~-~-----  151 (883)
                      +...|++++|+..+..-...  -+|. ..+...-..|.+.|+.++|..++..+...  .|+...|...+..+. -     
T Consensus        14 l~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~   89 (517)
T PF12569_consen   14 LEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS   89 (517)
T ss_pred             HHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence            56779999999999775433  3454 45566677888999999999999999986  467777665555554 1     


Q ss_pred             cCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 002761          152 KGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYL-EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEI  230 (883)
Q Consensus       152 ~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~-eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~l  230 (883)
                      ....+.-.++++++...-...+ +...+.-.+..-..+ ..+...+..+..+|++   .+|+.|-.-|....+..-..++
T Consensus        90 ~~~~~~~~~~y~~l~~~yp~s~-~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l  165 (517)
T PF12569_consen   90 DEDVEKLLELYDELAEKYPRSD-APRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL  165 (517)
T ss_pred             cccHHHHHHHHHHHHHhCcccc-chhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence            2256777888888876542222 111121111111122 2455566677778875   4566666667766566666666


Q ss_pred             HHHHHHc----C----------CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHc
Q 002761          231 AYEMEAA----G----------RMATTFHF--NHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRA  293 (883)
Q Consensus       231 f~~M~~~----G----------~~Pd~~ty--n~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd-~~tyn~LI~ay~~~  293 (883)
                      +......    +          -.|....|  .-|-..|-..|++++|....+....    ..|+ +..|.+-...|-+.
T Consensus       166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~----htPt~~ely~~KarilKh~  241 (517)
T PF12569_consen  166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE----HTPTLVELYMTKARILKHA  241 (517)
T ss_pred             HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHC
Confidence            6665432    1          13444444  5556678899999999999997662    2555 56788888889999


Q ss_pred             CCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--ccccccCCCCcHH--HH
Q 002761          294 ESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT--KVLHNEGNFGDPL--SL  368 (883)
Q Consensus       294 G~~d~~~eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~--~~~~~~~~~~dtY--n~  368 (883)
                      |   +..+|.+.++..+.    +.+ |...=+-....+.++|++++|.+++....+.+..+  ++..+.    ..|  ..
T Consensus       242 G---~~~~Aa~~~~~Ar~----LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ----c~Wf~~e  310 (517)
T PF12569_consen  242 G---DLKEAAEAMDEARE----LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ----CMWFETE  310 (517)
T ss_pred             C---CHHHHHHHHHHHHh----CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH----HHHHHHH
Confidence            9   56688888777765    333 55666667788999999999999999887765422  111100    012  34


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhh
Q 002761          369 YLRALCREGRIIELLEALEAMAK  391 (883)
Q Consensus       369 LI~~y~~~G~~~eA~~lf~~M~~  391 (883)
                      .-.+|.+.|++..|+..|....+
T Consensus       311 ~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  311 CAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHH
Confidence            57889999999999988877743

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.00  E-value=0.062  Score=62.99  Aligned_cols=201  Identities=14%  Similarity=0.056  Sum_probs=110.6

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLIALARLFGSKGLATK  157 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~~LI~a~~~~g~~~~  157 (883)
                      +...|+.++|....+.-.+.. ..+.+.|+.+--.+-...++++|++.|+.....  .| |...+.-|--.-++.|+++.
T Consensus        51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~  127 (700)
T KOG1156|consen   51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEG  127 (700)
T ss_pred             hhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhh
Confidence            555666677776666555433 245566666665555666777777777665543  33 33444433333345566666


Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHH------HHHcCChHHHHHH
Q 002761          158 GLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG-LRATDEIYDLMIAE------DCKAGDHSNALEI  230 (883)
Q Consensus       158 A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~g-i~pd~~tyn~LI~a------~~k~g~~eeA~~l  230 (883)
                      ....-.++.+........|..+.-++--.|....|..+.++..+.. -.|+...|.-...-      ..++|.+++|.+.
T Consensus       128 ~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~  207 (700)
T KOG1156|consen  128 YLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH  207 (700)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            6666555555433222366666666777777777777777766543 23555555443333      2345555555555


Q ss_pred             HHHHHHcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHH
Q 002761          231 AYEMEAAGRMATTFHF-NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ  288 (883)
Q Consensus       231 f~~M~~~G~~Pd~~ty-n~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~  288 (883)
                      +..-... +. |-+.| -+--+.+.+.+++++|..++..+..    ..||.+-|+-.+.
T Consensus       208 L~~~e~~-i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~----rnPdn~~Yy~~l~  260 (700)
T KOG1156|consen  208 LLDNEKQ-IV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLE----RNPDNLDYYEGLE  260 (700)
T ss_pred             HHhhhhH-HH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh----hCchhHHHHHHHH
Confidence            4433322 11 22222 3444556677777777777776662    1455555554433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.00  E-value=0.04  Score=61.79  Aligned_cols=303  Identities=12%  Similarity=-0.043  Sum_probs=174.8

Q ss_pred             hcCChHHHHHHHHHHHHCC-CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 002761           81 RNRDAPRVNDVIYDMIAAG-LSPGPRSF-HGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS----KGL  154 (883)
Q Consensus        81 k~G~~~~A~~lf~~M~~~G-~~pd~~ty-n~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~----~g~  154 (883)
                      ..|+.+.+...+....+.. ..++...- ......+...|++++|..++++..... +-|...+.. ...+..    .+.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~   95 (355)
T cd05804          18 LGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGM   95 (355)
T ss_pred             hcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccC
Confidence            3456666665555554322 12232222 222334567899999999999987752 223334442 222222    344


Q ss_pred             HHHHHHHHHHHHHcCCChhH--HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002761          155 ATKGLEILAAMEKINYDIRQ--AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY  232 (883)
Q Consensus       155 ~~~A~~l~~~m~~~g~~pdv--tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~  232 (883)
                      ...+.+.+..  .....|+.  ....+...+...|++++|...+++..+.. +.+...+..+-..|...|++++|...+.
T Consensus        96 ~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~  172 (355)
T cd05804          96 RDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFME  172 (355)
T ss_pred             chhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5555555544  22233433  44455678889999999999999998854 2345778888899999999999999999


Q ss_pred             HHHHcCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCC-CCCHHHH-H--HHHHHHHHcCCcccHHHHHHH
Q 002761          233 EMEAAGR-MATT--FHFNHLLSCQATCGIPEVAFATFENMEYGEDYM-KPDTETY-N--CVIQAYTRAESYDRVQDVAEL  305 (883)
Q Consensus       233 ~M~~~G~-~Pd~--~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi-~pd~~ty-n--~LI~ay~~~G~~d~~~eAl~l  305 (883)
                      ......- .|+.  ..|..+...|...|++++|..+|++..  .... .+..... +  .++.-+...|..+.....-.+
T Consensus       173 ~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~  250 (355)
T cd05804         173 SWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI--APSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDL  250 (355)
T ss_pred             hhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh--ccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHH
Confidence            8876532 2333  345678889999999999999999976  2221 2222221 2  334444444532211111111


Q ss_pred             HHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHH--HHHHHcCCHHHHH
Q 002761          306 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYL--RALCREGRIIELL  383 (883)
Q Consensus       306 f~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI--~~y~~~G~~~eA~  383 (883)
                      ...-.....+ ............++...|+.+.|..++..+.......+...  .....+-..++  -++.+.|+.++|.
T Consensus       251 ~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~~~~~~~l~A~~~~~~g~~~~A~  327 (355)
T cd05804         251 ADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNK--QPARDVGLPLAEALYAFAEGNYATAL  327 (355)
T ss_pred             HHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchh--hhHHhhhHHHHHHHHHHHcCCHHHHH
Confidence            1111110001 11112223566688899999999999999875222100000  00000112233  3455889999999


Q ss_pred             HHHHHHhhCC
Q 002761          384 EALEAMAKDN  393 (883)
Q Consensus       384 ~lf~~M~~~G  393 (883)
                      +++..-...+
T Consensus       328 ~~L~~al~~a  337 (355)
T cd05804         328 ELLGPVRDDL  337 (355)
T ss_pred             HHHHHHHHHH
Confidence            9998875543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.00  E-value=0.0039  Score=73.75  Aligned_cols=363  Identities=12%  Similarity=0.083  Sum_probs=212.0

Q ss_pred             CHHHHHHHH--HHHHhCCChhhHHHHHHcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 002761           22 GVVPIRSAM--SSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAG   99 (883)
Q Consensus        22 d~~syn~LI--~~~~k~g~~~~A~~M~~~gv~Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G   99 (883)
                      |.++--+|+  +-|..-|..+.|-+-.+  ..-+...|..+-+.|.+..+++.++.-+++.++.+-..|   +++..+.|
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~--~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRA---lR~a~q~~  799 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQ--FIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARA---LRRAQQNG  799 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHH--HHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHH---HHHHHhCC
Confidence            445555555  34566677777722221  123567789999999999999888877765544333332   33444432


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHH
Q 002761          100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLIL  179 (883)
Q Consensus       100 ~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~L  179 (883)
                      -  +...--  -......|.+++|..+|++-++         |..|=+.|-..|.+++|.++-+.=-+-.+  ..||..-
T Consensus       800 ~--e~eakv--AvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL--r~Tyy~y  864 (1416)
T KOG3617|consen  800 E--EDEAKV--AVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL--RNTYYNY  864 (1416)
T ss_pred             c--chhhHH--HHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh--hhhHHHH
Confidence            1  111111  1122466889999999987654         44555666778899998887553222222  2255555


Q ss_pred             HHHHHHCCCHHHHHHHHHHH----------HhCC---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 002761          180 VEELVRNKYLEDANKVFLRG----------AKGG---------LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM  240 (883)
Q Consensus       180 I~~y~k~G~~eeA~~lf~~M----------~~~g---------i~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~  240 (883)
                      -.-+-..++++.|++.|++-          ....         -..|...|.---.-+-..|.++.|+.+|.....    
T Consensus       865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----  940 (1416)
T KOG3617|consen  865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----  940 (1416)
T ss_pred             HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence            55555567777777766542          1111         012333344344444567888888888876543    


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH
Q 002761          241 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV  320 (883)
Q Consensus       241 Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~  320 (883)
                           |-+++...|-.|+.++|-++-++-.        |....-.|.+.|-..|   ++.+|..+|.+.+          
T Consensus       941 -----~fs~VrI~C~qGk~~kAa~iA~esg--------d~AAcYhlaR~YEn~g---~v~~Av~FfTrAq----------  994 (1416)
T KOG3617|consen  941 -----YFSMVRIKCIQGKTDKAARIAEESG--------DKAACYHLARMYENDG---DVVKAVKFFTRAQ----------  994 (1416)
T ss_pred             -----hhhheeeEeeccCchHHHHHHHhcc--------cHHHHHHHHHHhhhhH---HHHHHHHHHHHHH----------
Confidence                 6678888888999999998887644        6667777888899999   7779999988764          


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHH--------HhhC
Q 002761          321 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA--------MAKD  392 (883)
Q Consensus       321 ~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~--------M~~~  392 (883)
                       +|...|.-| |.+++++-+.-+..|............|.-+|--..-.+..|-++|.+.+|+++-=+        +..+
T Consensus       995 -afsnAIRlc-KEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen  995 -AFSNAIRLC-KENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAK 1072 (1416)
T ss_pred             -HHHHHHHHH-HhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHH
Confidence             344555433 333333322222222210000000011111111223456778899999888876322        2233


Q ss_pred             CCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHH
Q 002761          393 NQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWV  448 (883)
Q Consensus       393 Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~  448 (883)
                      .+  .+++      -..|+..|.+.+....+|.-.+++|+.    +..+.+|.++.
T Consensus      1073 DL--d~~s------Dp~ll~RcadFF~~~~qyekAV~lL~~----ar~~~~AlqlC 1116 (1416)
T KOG3617|consen 1073 DL--DAGS------DPKLLRRCADFFENNQQYEKAVNLLCL----AREFSGALQLC 1116 (1416)
T ss_pred             hc--CCCC------CHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            33  2222      346788888888777777777777765    44455555544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=0.0061  Score=70.08  Aligned_cols=286  Identities=11%  Similarity=0.016  Sum_probs=205.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHH
Q 002761          101 SPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILV  180 (883)
Q Consensus       101 ~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI  180 (883)
                      .-++...-.-..-|-..+++.+.+++++..... .+++...+..-|.++...|+-.+-..+=..|++.-....++|-++-
T Consensus       241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg  319 (611)
T KOG1173|consen  241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG  319 (611)
T ss_pred             hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence            344555555566677789999999999988765 4556667777788888888887777777777776544445999998


Q ss_pred             HHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHc--C-CCCCHHHHHHHHHHHHHc
Q 002761          181 EELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAA--G-RMATTFHFNHLLSCQATC  256 (883)
Q Consensus       181 ~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~~~--G-~~Pd~~tyn~LI~~y~k~  256 (883)
                      --|.--|+..+|++.|.+-..  +.|.- ..|-..-.+|+-.|..++|...+...-+.  | ..|..+    +---|.+.
T Consensus       320 ~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY----lgmey~~t  393 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY----LGMEYMRT  393 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH----HHHHHHHh
Confidence            888888999999999998654  33333 67888889999999999999888765542  2 233332    22347788


Q ss_pred             CCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC----CHHHHHHHHHHHHH
Q 002761          257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP----NVKTYALLVECFTK  332 (883)
Q Consensus       257 G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P----d~~Ty~~LI~a~~k  332 (883)
                      +.++.|.+.|.+..   .-.+-|....+-+--...+.+   ...+|..+|+.-+..-+.+-+    -..|++.|-.+|-+
T Consensus       394 ~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~---~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk  467 (611)
T KOG1173|consen  394 NNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYE---EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK  467 (611)
T ss_pred             ccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHh---hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence            99999999998866   222446667777666666666   555899999887631011112    23456777789999


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHH
Q 002761          333 YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVS  412 (883)
Q Consensus       333 ~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~  412 (883)
                      .+.+++|+..|+......         .+..++|+++--.|...|+++.|.+.|++-+-..   |.+++     ...+++
T Consensus       468 l~~~~eAI~~~q~aL~l~---------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~---p~n~~-----~~~lL~  530 (611)
T KOG1173|consen  468 LNKYEEAIDYYQKALLLS---------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALK---PDNIF-----ISELLK  530 (611)
T ss_pred             HhhHHHHHHHHHHHHHcC---------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC---CccHH-----HHHHHH
Confidence            999999999999987532         2333478999999999999999999999987654   55554     344555


Q ss_pred             HHhh
Q 002761          413 SWIE  416 (883)
Q Consensus       413 ~~~~  416 (883)
                      .+++
T Consensus       531 ~aie  534 (611)
T KOG1173|consen  531 LAIE  534 (611)
T ss_pred             HHHH
Confidence            4443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.93  E-value=0.089  Score=61.65  Aligned_cols=297  Identities=12%  Similarity=0.083  Sum_probs=236.3

Q ss_pred             hcCChHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCC
Q 002761           81 RNRDAPRVNDVIYD----MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL--HETLIALARLFGSKGL  154 (883)
Q Consensus        81 k~G~~~~A~~lf~~----M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd--~~ty~~LI~a~~~~g~  154 (883)
                      .+|+++.+.+++++    +...|+..+..-|-.=-.+|-..|.+-.+..+.+....-|+.-.  ..||+.--..|.+.+.
T Consensus       452 ~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~  531 (913)
T KOG0495|consen  452 ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA  531 (913)
T ss_pred             hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch
Confidence            46788888887765    44578888999998888889999999999999988888876542  4589999999999999


Q ss_pred             HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002761          155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM  234 (883)
Q Consensus       155 ~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M  234 (883)
                      ++-|+.+|...++--..-...|......=-..|..+.-..+|++.... ++-..+.|-.....+-.+|++..|..++...
T Consensus       532 ~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~a  610 (913)
T KOG0495|consen  532 IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQA  610 (913)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            999999999998865443348888888777889999999999998874 4445578888888899999999999999998


Q ss_pred             HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC
Q 002761          235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK  314 (883)
Q Consensus       235 ~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~  314 (883)
                      .+..-. +...|-+-+..-..+..++.|..+|.+..  .  ..|+...|.--+.----.+   ..++|++++++-++   
T Consensus       611 f~~~pn-seeiwlaavKle~en~e~eraR~llakar--~--~sgTeRv~mKs~~~er~ld---~~eeA~rllEe~lk---  679 (913)
T KOG0495|consen  611 FEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR--S--ISGTERVWMKSANLERYLD---NVEEALRLLEEALK---  679 (913)
T ss_pred             HHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh--c--cCCcchhhHHHhHHHHHhh---hHHHHHHHHHHHHH---
Confidence            877533 77889999999999999999999999877  3  3556666654444444455   56799999999886   


Q ss_pred             CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761          315 RLQPNVK-TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN  393 (883)
Q Consensus       315 gi~Pd~~-Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~G  393 (883)
                       .-|+-. .|..+-..+-..++++.|...|..=.+.-  |..+.       .|-.|...=-+.|.+..|..+|++-+-++
T Consensus       680 -~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c--P~~ip-------LWllLakleEk~~~~~rAR~ildrarlkN  749 (913)
T KOG0495|consen  680 -SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC--PNSIP-------LWLLLAKLEEKDGQLVRARSILDRARLKN  749 (913)
T ss_pred             -hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC--CCCch-------HHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence             457754 45555568889999999999887665432  22222       47888888899999999999999998887


Q ss_pred             CCCCCccee
Q 002761          394 QPVPPRAMI  402 (883)
Q Consensus       394 i~i~p~~~~  402 (883)
                         |.+..+
T Consensus       750 ---Pk~~~l  755 (913)
T KOG0495|consen  750 ---PKNALL  755 (913)
T ss_pred             ---CCcchh
Confidence               666655

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.88  E-value=0.0009  Score=71.90  Aligned_cols=230  Identities=11%  Similarity=0.058  Sum_probs=164.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHH-HHHHHHHHH
Q 002761          107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAW-LILVEELVR  185 (883)
Q Consensus       107 yn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvty-n~LI~~y~k  185 (883)
                      =+.|-.+|.+.|.+.+|.+.|+.-...  .|-..||-.|-++|.+..+...|+.+|.+-... ++-++|| .-+-..+-.
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence            366778888888888888888776554  566678888888888888888888888877664 3445544 445566777


Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002761          186 NKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT  265 (883)
Q Consensus       186 ~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~l  265 (883)
                      .++.++|.++|+...+.. ..++.+..++-.+|.-.++++-|+..++.+.+.|+. +...|+.+--+|.-.+.++-++.-
T Consensus       303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence            788888888888877642 234566667777888888888888888888888876 666777777777777888888887


Q ss_pred             HHHchhCCCCCCCCH--HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002761          266 FENMEYGEDYMKPDT--ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF  343 (883)
Q Consensus       266 f~~M~~g~~gi~pd~--~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf  343 (883)
                      |.+..  .---.|+.  -.|-.+-......|   +..-|.+.|+-...   .-.-+...+|.|----.+.|++++|..++
T Consensus       381 f~RAl--stat~~~~aaDvWYNlg~vaV~iG---D~nlA~rcfrlaL~---~d~~h~ealnNLavL~~r~G~i~~Arsll  452 (478)
T KOG1129|consen  381 FQRAL--STATQPGQAADVWYNLGFVAVTIG---DFNLAKRCFRLALT---SDAQHGEALNNLAVLAARSGDILGARSLL  452 (478)
T ss_pred             HHHHH--hhccCcchhhhhhhccceeEEecc---chHHHHHHHHHHhc---cCcchHHHHHhHHHHHhhcCchHHHHHHH
Confidence            77655  22223433  23545555566677   44477777776664   22335778887777777889999999888


Q ss_pred             HHHHhC
Q 002761          344 RALQNY  349 (883)
Q Consensus       344 ~~M~~~  349 (883)
                      ......
T Consensus       453 ~~A~s~  458 (478)
T KOG1129|consen  453 NAAKSV  458 (478)
T ss_pred             HHhhhh
Confidence            887653

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.87  E-value=0.00067  Score=72.86  Aligned_cols=218  Identities=16%  Similarity=0.080  Sum_probs=124.1

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHH
Q 002761           81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL-IALARLFGSKGLATKGL  159 (883)
Q Consensus        81 k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty-~~LI~a~~~~g~~~~A~  159 (883)
                      +.|.+.+|.+.|..-...  .|-+.||-.|-.+|.+-.++..|+.+|.+-..  ..|-.+|| .-..+.+-..++.++|.
T Consensus       235 rLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam~~~~~a~  310 (478)
T KOG1129|consen  235 RLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAMEQQEDAL  310 (478)
T ss_pred             HhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHHHhHHHHH
Confidence            345556666666655544  45555666666666666666666666665433  24544554 33445555566666666


Q ss_pred             HHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761          160 EILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG  238 (883)
Q Consensus       160 ~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G  238 (883)
                      ++++...+... .++ ...++-.+|.-.++++-|++.|+++.+.|+ -+...|+.+--+|.-.++++-++.-|......-
T Consensus       311 ~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlsta  388 (478)
T KOG1129|consen  311 QLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTA  388 (478)
T ss_pred             HHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence            66666665432 223 444455556666666666666666666665 344556655555666666666666666665544


Q ss_pred             CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 002761          239 RMATT--FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV  310 (883)
Q Consensus       239 ~~Pd~--~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~  310 (883)
                      -.|+.  .+|-.|-......|++..|.+.|+-...   .-.-+..++|.|----.+.|   ++++|..+++...
T Consensus       389 t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~---~d~~h~ealnNLavL~~r~G---~i~~Arsll~~A~  456 (478)
T KOG1129|consen  389 TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT---SDAQHGEALNNLAVLAARSG---DILGARSLLNAAK  456 (478)
T ss_pred             cCcchhhhhhhccceeEEeccchHHHHHHHHHHhc---cCcchHHHHHhHHHHHhhcC---chHHHHHHHHHhh
Confidence            43432  2344444555556666666666665541   11223455666665566666   4446666666544

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.87  E-value=0.0038  Score=72.81  Aligned_cols=195  Identities=15%  Similarity=0.111  Sum_probs=145.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 002761          144 ALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGD  223 (883)
Q Consensus       144 ~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~  223 (883)
                      ..|.+......+.+|..+++.+....... --|.-+-+-|+..|+++.|.++|-+-         -.++-.|..|.++|+
T Consensus       737 kaieaai~akew~kai~ildniqdqk~~s-~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k  806 (1636)
T KOG3616|consen  737 KAIEAAIGAKEWKKAISILDNIQDQKTAS-GYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK  806 (1636)
T ss_pred             HHHHHHhhhhhhhhhHhHHHHhhhhcccc-ccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence            34555666778889999988877654311 14667778899999999999999763         346778889999999


Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHH
Q 002761          224 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVA  303 (883)
Q Consensus       224 ~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl  303 (883)
                      ++.|.++-.+.  .|....++.|-+-..-+-+.|++.+|.++|-.+.      .|+..     |..|-++|..|   +.+
T Consensus       807 w~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~------~p~~a-----iqmydk~~~~d---dmi  870 (1636)
T KOG3616|consen  807 WEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG------EPDKA-----IQMYDKHGLDD---DMI  870 (1636)
T ss_pred             HHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc------CchHH-----HHHHHhhCcch---HHH
Confidence            99998886544  4555667778777777889999999999998887      77754     78899999554   777


Q ss_pred             HHHHHhHhccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHH
Q 002761          304 ELLGMMVEDHKRLQPN--VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE  381 (883)
Q Consensus       304 ~lf~~M~~~~~gi~Pd--~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~e  381 (883)
                      ++..+-.       |+  ..|...+-.-|-..|++..|...|-+...                 |.+-+++|-..+.+++
T Consensus       871 rlv~k~h-------~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d-----------------~kaavnmyk~s~lw~d  926 (1636)
T KOG3616|consen  871 RLVEKHH-------GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-----------------FKAAVNMYKASELWED  926 (1636)
T ss_pred             HHHHHhC-------hhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh-----------------HHHHHHHhhhhhhHHH
Confidence            7766542       33  34555666777788999999988866643                 6677888888888888


Q ss_pred             HHHHHHH
Q 002761          382 LLEALEA  388 (883)
Q Consensus       382 A~~lf~~  388 (883)
                      |.++-+.
T Consensus       927 ayriakt  933 (1636)
T KOG3616|consen  927 AYRIAKT  933 (1636)
T ss_pred             HHHHHhc
Confidence            8876543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.85  E-value=0.00054  Score=75.20  Aligned_cols=149  Identities=16%  Similarity=0.082  Sum_probs=76.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 002761          148 LFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCK----AG  222 (883)
Q Consensus       148 a~~~~g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k----~g  222 (883)
                      .+...|++++|++++..-      .+. .....|..|.+.++++.|.+.|+.|.+.  ..|. +...+..++..    ..
T Consensus       111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e  181 (290)
T PF04733_consen  111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGE  181 (290)
T ss_dssp             HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTT
T ss_pred             HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCch
Confidence            344456666666655421      112 4445566666666666666666666653  2332 22223333322    23


Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHH
Q 002761          223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV  302 (883)
Q Consensus       223 ~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eA  302 (883)
                      .+.+|..+|+++... +.++..+.|.+..++...|++++|.+++.+..  ... +.|..+...+|......|..  .+.+
T Consensus       182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al--~~~-~~~~d~LaNliv~~~~~gk~--~~~~  255 (290)
T PF04733_consen  182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL--EKD-PNDPDTLANLIVCSLHLGKP--TEAA  255 (290)
T ss_dssp             CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC--CC--CCHHHHHHHHHHHHHHTT-T--CHHH
T ss_pred             hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH--Hhc-cCCHHHHHHHHHHHHHhCCC--hhHH
Confidence            466666666665443 44566666666666666666666666666544  111 22344444555555555532  1455


Q ss_pred             HHHHHHhHh
Q 002761          303 AELLGMMVE  311 (883)
Q Consensus       303 l~lf~~M~~  311 (883)
                      -+++.++..
T Consensus       256 ~~~l~qL~~  264 (290)
T PF04733_consen  256 ERYLSQLKQ  264 (290)
T ss_dssp             HHHHHHCHH
T ss_pred             HHHHHHHHH
Confidence            566666665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.84  E-value=2.1e-05  Score=56.55  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 002761          105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL  138 (883)
Q Consensus       105 ~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd  138 (883)
                      ++||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            3789999999999999999999999999999887

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.82  E-value=0.0048  Score=76.95  Aligned_cols=213  Identities=13%  Similarity=0.072  Sum_probs=165.5

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002761          161 ILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT-----DEIYDLMIAEDCKAGDHSNALEIAYEME  235 (883)
Q Consensus       161 l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd-----~~tyn~LI~a~~k~g~~eeA~~lf~~M~  235 (883)
                      =|.+++.........|-..|.-....++++.|++++++.... |.+.     ...|.++++.-.-.|.-+...++|++..
T Consensus      1446 DferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred             HHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence            345555544333348888888889999999999999988653 2111     2577888887777788888889999888


Q ss_pred             HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCC
Q 002761          236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR  315 (883)
Q Consensus       236 ~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~g  315 (883)
                      +.. . -..+|..|...|.+.+..++|-++|+.|.+   .+.-....|...+..+.++.   +.+.|..++.+..+    
T Consensus      1525 qyc-d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~K---KF~q~~~vW~~y~~fLl~~n---e~~aa~~lL~rAL~---- 1592 (1710)
T KOG1070|consen 1525 QYC-D-AYTVHLKLLGIYEKSEKNDEADELLRLMLK---KFGQTRKVWIMYADFLLRQN---EAEAARELLKRALK---- 1592 (1710)
T ss_pred             Hhc-c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHH---HhcchhhHHHHHHHHHhccc---HHHHHHHHHHHHHh----
Confidence            753 1 245788999999999999999999999983   23346778999999999999   88899999999876    


Q ss_pred             CCCC--HHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 002761          316 LQPN--VKTY-ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD  392 (883)
Q Consensus       316 i~Pd--~~Ty-~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~  392 (883)
                      +-|-  .+-+ .-....-.+.|+.+.+..+|+.....         |.+.-|.|+..|++=.++|..+.+..+|++....
T Consensus      1593 ~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a---------yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1593 SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA---------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred             hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh---------CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence            4454  3222 33445566899999999999988753         4455568999999999999999999999999999


Q ss_pred             CCC
Q 002761          393 NQP  395 (883)
Q Consensus       393 Gi~  395 (883)
                      ++.
T Consensus      1664 ~l~ 1666 (1710)
T KOG1070|consen 1664 KLS 1666 (1710)
T ss_pred             CCC
Confidence            983

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.82  E-value=2.4e-05  Score=56.28  Aligned_cols=33  Identities=36%  Similarity=0.483  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 002761          210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMAT  242 (883)
Q Consensus       210 tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd  242 (883)
                      +||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            566666666666666666666666666666655

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.80  E-value=0.001  Score=73.12  Aligned_cols=248  Identities=15%  Similarity=0.100  Sum_probs=157.9

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002761           78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK  157 (883)
Q Consensus        78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~  157 (883)
                      .+.-.|++..+..-.+ .....-.......--+.++|...|+.+.++   .+.... -.|.......+...+....+-+.
T Consensus        10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~   84 (290)
T PF04733_consen   10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKES   84 (290)
T ss_dssp             HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred             HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHH
Confidence            4455677777776555 222111112344556778888889877654   333333 36666666555444433344444


Q ss_pred             HHHHHHHHHHcCCC-hhHHHH-HHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002761          158 GLEILAAMEKINYD-IRQAWL-ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME  235 (883)
Q Consensus       158 A~~l~~~m~~~g~~-pdvtyn-~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~  235 (883)
                      +..-+......... .+.++. ..-..|...|++++|++++..-      .+.......+..|.+.++++.|.+.++.|.
T Consensus        85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~  158 (290)
T PF04733_consen   85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ  158 (290)
T ss_dssp             HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44444333333322 222222 2234567789999999988653      456777889999999999999999999998


Q ss_pred             HcCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 002761          236 AAGRMATTFHFNHLLSCQA----TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE  311 (883)
Q Consensus       236 ~~G~~Pd~~tyn~LI~~y~----k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~  311 (883)
                      +..  .|. +..-|..++.    -...+.+|..+|+++.   ..+.++..+.|.+..++...|   +.++|.+++.+...
T Consensus       159 ~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~---~~~~~t~~~lng~A~~~l~~~---~~~eAe~~L~~al~  229 (290)
T PF04733_consen  159 QID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELS---DKFGSTPKLLNGLAVCHLQLG---HYEEAEELLEEALE  229 (290)
T ss_dssp             CCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHH---CCS--SHHHHHHHHHHHHHCT----HHHHHHHHHHHCC
T ss_pred             hcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHH---hccCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHH
Confidence            753  343 3333444443    3347999999999998   345678899999999999999   66699999988764


Q ss_pred             ccCCCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhC
Q 002761          312 DHKRLQP-NVKTYALLVECFTKYCAV-TEAIRHFRALQNY  349 (883)
Q Consensus       312 ~~~gi~P-d~~Ty~~LI~a~~k~G~~-eeA~~lf~~M~~~  349 (883)
                          ..| |..|...+|.+....|+. +.+.+++..++..
T Consensus       230 ----~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  230 ----KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             ----C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             ----hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence                234 456777788888899988 6788899888753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.78  E-value=0.0052  Score=63.69  Aligned_cols=187  Identities=12%  Similarity=0.009  Sum_probs=113.7

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 002761           78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLIALARLFGSKGLAT  156 (883)
Q Consensus        78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~~LI~a~~~~g~~~  156 (883)
                      .|...|+...|..-++...+.. +-+..+|..+-..|-+.|..+.|.+-|++..+.  .| +....|.--.-+|..|.++
T Consensus        44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~~~  120 (250)
T COG3063          44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGRPE  120 (250)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCChH
Confidence            4666677777777777766653 234456666667777777777777777665543  23 3444555555566667777


Q ss_pred             HHHHHHHHHHHcCCChh--HHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHH
Q 002761          157 KGLEILAAMEKINYDIR--QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYE  233 (883)
Q Consensus       157 ~A~~l~~~m~~~g~~pd--vtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~  233 (883)
                      +|.+.|++....-.-+.  .+|..+.-+..+.|+.+.|...|.+-.+..  |+. .+.-.+.....+.|++-.|...++.
T Consensus       121 eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~  198 (250)
T COG3063         121 EAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPARLYLER  198 (250)
T ss_pred             HHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence            77777766665432222  266666666666677777777776665532  332 4455566666666777777666666


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761          234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME  270 (883)
Q Consensus       234 M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~  270 (883)
                      ....+. ++..+.-..|..--..|+.+.|.+.=..+.
T Consensus       199 ~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~  234 (250)
T COG3063         199 YQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ  234 (250)
T ss_pred             HHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            666554 566666556666666666666655544444

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=0.014  Score=67.13  Aligned_cols=258  Identities=10%  Similarity=0.035  Sum_probs=199.1

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002761           78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK  157 (883)
Q Consensus        78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~  157 (883)
                      .+...+++....++++...+.. +++...+..=|.++...|+..+-+.+=.+|... .+-...+|-++---|-..|...+
T Consensus       253 ~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~se  330 (611)
T KOG1173|consen  253 RLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSE  330 (611)
T ss_pred             HHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHH
Confidence            3667889999999999998765 566677777788999999888877777777664 34467889998888888899999


Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002761          158 GLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG--GL-RATDEIYDLMIAEDCKAGDHSNALEIAYEM  234 (883)
Q Consensus       158 A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~--gi-~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M  234 (883)
                      |++.|.............|-.+-+.|+-.|.-+.|...+...-+.  |. .|.  .|..  --|.+.+..+.|.+.|.+.
T Consensus       331 ARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--LYlg--mey~~t~n~kLAe~Ff~~A  406 (611)
T KOG1173|consen  331 ARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--LYLG--MEYMRTNNLKLAEKFFKQA  406 (611)
T ss_pred             HHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--HHHH--HHHHHhccHHHHHHHHHHH
Confidence            999999887665444458999999999999999999988775541  22 232  2222  3477889999999999887


Q ss_pred             HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCC----CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 002761          235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM----KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV  310 (883)
Q Consensus       235 ~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi----~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~  310 (883)
                      ... .+-|..+.+-+--..-+.+.+.+|...|......-+.+    ..-..+++-|-.+|.+.+   +.++|+..|++.+
T Consensus       407 ~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~---~~~eAI~~~q~aL  482 (611)
T KOG1173|consen  407 LAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN---KYEEAIDYYQKAL  482 (611)
T ss_pred             Hhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh---hHHHHHHHHHHHH
Confidence            654 34467788888777788899999999998765200011    123456888888999999   6679999999988


Q ss_pred             hccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002761          311 EDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN  348 (883)
Q Consensus       311 ~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~  348 (883)
                      .   -..-|..|+.++--.|...|+++.|...|.+..-
T Consensus       483 ~---l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  483 L---LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             H---cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence            6   3445788888888899999999999999988763

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.74  E-value=0.021  Score=66.86  Aligned_cols=137  Identities=14%  Similarity=0.159  Sum_probs=68.8

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 002761          216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES  295 (883)
Q Consensus       216 ~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~  295 (883)
                      .+...+..+.+|+.+++.++.....  .--|.-+.+.|+..|+++.|.++|.+--           .++--|..|.++| 
T Consensus       740 eaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----------~~~dai~my~k~~-  805 (1636)
T KOG3616|consen  740 EAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----------LFKDAIDMYGKAG-  805 (1636)
T ss_pred             HHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----------hhHHHHHHHhccc-
Confidence            3344455566666666655544321  1224445556666666666666665432           1334455666666 


Q ss_pred             cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHH
Q 002761          296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR  375 (883)
Q Consensus       296 ~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~  375 (883)
                        ++++|+++-.+-    .|.......|.+-..-+-+.|++.+|.+++-.+..    |             ...|.+|-+
T Consensus       806 --kw~da~kla~e~----~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p-------------~~aiqmydk  862 (1636)
T KOG3616|consen  806 --KWEDAFKLAEEC----HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----P-------------DKAIQMYDK  862 (1636)
T ss_pred             --cHHHHHHHHHHh----cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----c-------------hHHHHHHHh
Confidence              555666554433    23333344444444445555666666655533221    0             134555566


Q ss_pred             cCCHHHHHHHHHHH
Q 002761          376 EGRIIELLEALEAM  389 (883)
Q Consensus       376 ~G~~~eA~~lf~~M  389 (883)
                      +|..++.+++.++-
T Consensus       863 ~~~~ddmirlv~k~  876 (1636)
T KOG3616|consen  863 HGLDDDMIRLVEKH  876 (1636)
T ss_pred             hCcchHHHHHHHHh
Confidence            66655555555443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.69  E-value=0.023  Score=59.01  Aligned_cols=207  Identities=15%  Similarity=0.053  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 002761          106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELV  184 (883)
Q Consensus       106 tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~  184 (883)
                      +.--|--+|.+.|+...|..-+++.++.  .| +..+|..+...|-+.|..+.|.+-|+...+.......+.|..-..+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            3445556788888888888888877764  34 34567777778888888888888888887765433337777777788


Q ss_pred             HCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002761          185 RNKYLEDANKVFLRGAKGGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF  263 (883)
Q Consensus       185 k~G~~eeA~~lf~~M~~~gi~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~  263 (883)
                      ..|++++|...|++....-.-|. ..||..+.-+..+.|+.+.|...|++-.+..-. ...+.-.+-...-+.|++-.|.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence            88888888888887766422222 256777777777788888888888877765322 3445566677777778888888


Q ss_pred             HHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHH
Q 002761          264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL  325 (883)
Q Consensus       264 ~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~  325 (883)
                      ..++...  ..+. ++..+.---|.---..|   +...+-+.=.++.+    .-|...-|..
T Consensus       194 ~~~~~~~--~~~~-~~A~sL~L~iriak~~g---d~~~a~~Y~~qL~r----~fP~s~e~q~  245 (250)
T COG3063         194 LYLERYQ--QRGG-AQAESLLLGIRIAKRLG---DRAAAQRYQAQLQR----LFPYSEEYQT  245 (250)
T ss_pred             HHHHHHH--hccc-ccHHHHHHHHHHHHHhc---cHHHHHHHHHHHHH----hCCCcHHHHh
Confidence            7777776  3333 66666666666666666   33355444444433    4455554443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.66  E-value=6e-05  Score=54.17  Aligned_cols=33  Identities=24%  Similarity=0.502  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002761          105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP  137 (883)
Q Consensus       105 ~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P  137 (883)
                      .+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            578888888888888888888888888888877

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.63  E-value=0.2  Score=56.79  Aligned_cols=383  Identities=11%  Similarity=0.034  Sum_probs=249.6

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002761           82 NRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI  161 (883)
Q Consensus        82 ~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l  161 (883)
                      .+++..|.++|++..... ..+...|--.+..=.++..+..|..++++....=...|. .|---+..=-..|++..|+++
T Consensus        86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqi  163 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQI  163 (677)
T ss_pred             HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHH
Confidence            567789999999998766 567778888888888999999999999997764222232 233344444567999999999


Q ss_pred             HHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CC
Q 002761          162 LAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA-GR  239 (883)
Q Consensus       162 ~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~-G~  239 (883)
                      |.+-..  ..|+. .|++.|+.=.+-..++.|..+++...-  +.|++.+|---..-=-++|....|..+|....+. |-
T Consensus       164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~  239 (677)
T KOG1915|consen  164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD  239 (677)
T ss_pred             HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence            998876  57888 999999999999999999999999986  5699999998888888999999999999877653 21


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCC--HHHHHHHHHHHHHcCCcccHHHHHHH-----HHHhHh
Q 002761          240 -MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD--TETYNCVIQAYTRAESYDRVQDVAEL-----LGMMVE  311 (883)
Q Consensus       240 -~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd--~~tyn~LI~ay~~~G~~d~~~eAl~l-----f~~M~~  311 (883)
                       .-+...|++....=.++..++.|.-+|.-..   ..++.+  ...|.....-=-+-|+..-+++++--     +..+++
T Consensus       240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAl---d~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~  316 (677)
T KOG1915|consen  240 DEEAEILFVAFAEFEERQKEYERARFIYKYAL---DHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS  316 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence             1123445555555567888999999987655   223333  44455444444445544455565532     333443


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHH--------HHHcCCHHHHH
Q 002761          312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA--------LCREGRIIELL  383 (883)
Q Consensus       312 ~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~--------y~~~G~~~eA~  383 (883)
                         .-.-|--||--.+.--...|+.+...++|+..... ++|....      ..|--.|-.        =....+.+.+.
T Consensus       317 ---~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ek------r~W~RYIYLWinYalyeEle~ed~ertr  386 (677)
T KOG1915|consen  317 ---KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEK------RYWRRYIYLWINYALYEELEAEDVERTR  386 (677)
T ss_pred             ---hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHH------HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence               22346667777777777889999999999988743 2221111      022222222        23457788888


Q ss_pred             HHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccce
Q 002761          384 EALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGF  463 (883)
Q Consensus       384 ~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~  463 (883)
                      ++|...+.  + +|....+    +..+--                 +.+.+-...-.+..|.+.+.  ...|..|-...|
T Consensus       387 ~vyq~~l~--l-IPHkkFt----FaKiWl-----------------myA~feIRq~~l~~ARkiLG--~AIG~cPK~KlF  440 (677)
T KOG1915|consen  387 QVYQACLD--L-IPHKKFT----FAKIWL-----------------MYAQFEIRQLNLTGARKILG--NAIGKCPKDKLF  440 (677)
T ss_pred             HHHHHHHh--h-cCcccch----HHHHHH-----------------HHHHHHHHHcccHHHHHHHH--HHhccCCchhHH
Confidence            88888876  2 2443332    222111                 12222233555666777765  356778876444


Q ss_pred             eccchHHHHHHHHHHhhchHHHHHHHHHHhcCCCccccCCChhHHHHHHHHHHh
Q 002761          464 IYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKK  517 (883)
Q Consensus       464 ty~~li~~~l~~~c~~g~~~~A~~Ll~eM~~~G~~~lls~~~~~~~~vi~~l~k  517 (883)
                            .+.|--=-+.+.++...+|++.-.+-+..-.  ..|..|..+-..|..
T Consensus       441 ------k~YIelElqL~efDRcRkLYEkfle~~Pe~c--~~W~kyaElE~~Lgd  486 (677)
T KOG1915|consen  441 ------KGYIELELQLREFDRCRKLYEKFLEFSPENC--YAWSKYAELETSLGD  486 (677)
T ss_pred             ------HHHHHHHHHHhhHHHHHHHHHHHHhcChHhh--HHHHHHHHHHHHhhh
Confidence                  1222222344667888888887765554310  146666666444443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.61  E-value=0.18  Score=60.37  Aligned_cols=229  Identities=13%  Similarity=0.051  Sum_probs=149.0

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C--------CCCCHHHHHHHHHHH
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSA-G--------VRPLHETLIALARLF  149 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~-G--------i~Pd~~ty~~LI~a~  149 (883)
                      |.-.|+.+.|.+-..-++.      ...|..|-+.|.+..+++-|.-.+..|... |        -.|+ .+-.-+.-..
T Consensus       738 yvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA  810 (1416)
T KOG3617|consen  738 YVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA  810 (1416)
T ss_pred             EEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence            5667999999888877663      478999999999988888887777776522 1        1222 2222222233


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 002761          150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALE  229 (883)
Q Consensus       150 ~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~  229 (883)
                      ...|.+++|+.+|++-.+.        ..|=..|-..|++++|.++-+.=-+-.++   .||..-..-+-..++.+.|++
T Consensus       811 ieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~Ale  879 (1416)
T KOG3617|consen  811 IELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALE  879 (1416)
T ss_pred             HHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHH
Confidence            5678899999999887664        34445677789999999887653322221   455555555556677777777


Q ss_pred             HHHHHH----------HcC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHH
Q 002761          230 IAYEME----------AAG---------RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY  290 (883)
Q Consensus       230 lf~~M~----------~~G---------~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay  290 (883)
                      .|+.-.          ...         -..|...|.---..+-..|.++.|..+|...+           -|-+++...
T Consensus       880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----------D~fs~VrI~  948 (1416)
T KOG3617|consen  880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----------DYFSMVRIK  948 (1416)
T ss_pred             HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----------hhhhheeeE
Confidence            766421          111         11133333333333445688888888877666           255677777


Q ss_pred             HHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002761          291 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ  347 (883)
Q Consensus       291 ~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~  347 (883)
                      |-.|   +.++|-++-++-        -|....-.|-..|-..|++.+|..+|-...
T Consensus       949 C~qG---k~~kAa~iA~es--------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  949 CIQG---KTDKAARIAEES--------GDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             eecc---CchHHHHHHHhc--------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            8888   555776664442        255666677788888888888888887775

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.59  E-value=8.5e-05  Score=53.38  Aligned_cols=33  Identities=30%  Similarity=0.457  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 002761          209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA  241 (883)
Q Consensus       209 ~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~P  241 (883)
                      .|||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            345555555555555555555555555555544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.59  E-value=0.11  Score=66.12  Aligned_cols=304  Identities=13%  Similarity=0.017  Sum_probs=190.3

Q ss_pred             HHhcCChHHHHHHHHHHHHCC--C----CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHH
Q 002761           79 HARNRDAPRVNDVIYDMIAAG--L----SPGPR--SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH----ETLIALA  146 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G--~----~pd~~--tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~----~ty~~LI  146 (883)
                      +...|++++|..++......-  .    .+...  ....+-..+...|++++|...+++....--..+.    .+.+.+-
T Consensus       419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg  498 (903)
T PRK04841        419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG  498 (903)
T ss_pred             HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence            456788999998888775421  0    11111  1222233456789999999999887653111222    2345566


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc----CCChh-H-HHHHHHHHHHHCCCHHHHHHHHHHHHh----CCCC--C-CHHHHHH
Q 002761          147 RLFGSKGLATKGLEILAAMEKI----NYDIR-Q-AWLILVEELVRNKYLEDANKVFLRGAK----GGLR--A-TDEIYDL  213 (883)
Q Consensus       147 ~a~~~~g~~~~A~~l~~~m~~~----g~~pd-v-tyn~LI~~y~k~G~~eeA~~lf~~M~~----~gi~--p-d~~tyn~  213 (883)
                      ..+...|+++.|...+.+....    |-... . +++.+-..+...|+++.|...+++...    .+..  + ....+..
T Consensus       499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  578 (903)
T PRK04841        499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI  578 (903)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence            6677899999999999887643    22111 2 556667788899999999999887654    2221  1 2344555


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHchh--CCCCCCCCHHHH--HH
Q 002761          214 MIAEDCKAGDHSNALEIAYEMEAA--GRMA--TTFHFNHLLSCQATCGIPEVAFATFENMEY--GEDYMKPDTETY--NC  285 (883)
Q Consensus       214 LI~a~~k~g~~eeA~~lf~~M~~~--G~~P--d~~tyn~LI~~y~k~G~~e~A~~lf~~M~~--g~~gi~pd~~ty--n~  285 (883)
                      +...+...|++++|...+.+....  ...+  ....+..+...+...|+.+.|.+.+.....  ...+........  ..
T Consensus       579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~  658 (903)
T PRK04841        579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV  658 (903)
T ss_pred             HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence            666677889999999999887542  1112  233445566678899999999999888752  011111111011  11


Q ss_pred             HHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCccccc
Q 002761          286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK---TYALLVECFTKYCAVTEAIRHFRALQNY----EGGTKVLHN  358 (883)
Q Consensus       286 LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~---Ty~~LI~a~~k~G~~eeA~~lf~~M~~~----~~~~~~~~~  358 (883)
                      .+..+...|   ..+.|..++.....  ........   .+..+..++...|+.++|..++......    +......  
T Consensus       659 ~~~~~~~~g---~~~~A~~~l~~~~~--~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a--  731 (903)
T PRK04841        659 RLIYWQMTG---DKEAAANWLRQAPK--PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN--  731 (903)
T ss_pred             HHHHHHHCC---CHHHHHHHHHhcCC--CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH--
Confidence            224455577   55678777766543  11111111   1345556788899999999999988642    1111111  


Q ss_pred             cCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 002761          359 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ  394 (883)
Q Consensus       359 ~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi  394 (883)
                           .++..+-.+|.+.|+.++|...+.+..+..-
T Consensus       732 -----~~~~~la~a~~~~G~~~~A~~~L~~Al~la~  762 (903)
T PRK04841        732 -----RNLILLNQLYWQQGRKSEAQRVLLEALKLAN  762 (903)
T ss_pred             -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence                 1355667788899999999999999987653

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=0.2  Score=54.94  Aligned_cols=405  Identities=10%  Similarity=0.051  Sum_probs=211.4

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 002761           78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG----  153 (883)
Q Consensus        78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g----  153 (883)
                      .+.+.|++++|..++.-+.... .|+...+-.|-.++.-.|.+.+|..+-...     .-+.-.-..|++.--+.+    
T Consensus        66 C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~  139 (557)
T KOG3785|consen   66 CYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKR  139 (557)
T ss_pred             HHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHH
Confidence            4667899999999999888754 566666666666666677777777654331     112222222222323333    


Q ss_pred             --------------------------CHHHHHHHHHHHHHcCCChhHHHH-HHHHHHHHCCCHHHHHHHHHHHHhCCCCC
Q 002761          154 --------------------------LATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDANKVFLRGAKGGLRA  206 (883)
Q Consensus       154 --------------------------~~~~A~~l~~~m~~~g~~pdvtyn-~LI~~y~k~G~~eeA~~lf~~M~~~gi~p  206 (883)
                                                .+.+|..++.+....+...- ..| .|--+|.+..-++-+.+++.--.+. ++-
T Consensus       140 ~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~-alNVy~ALCyyKlDYydvsqevl~vYL~q-~pd  217 (557)
T KOG3785|consen  140 ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI-ALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPD  217 (557)
T ss_pred             HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh-hhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCC
Confidence                                      34455555555544322111 222 1223555666666666666555442 222


Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------------------------CCCCH-----HHHHHHHHHHHH
Q 002761          207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG--------------------------RMATT-----FHFNHLLSCQAT  255 (883)
Q Consensus       207 d~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G--------------------------~~Pd~-----~tyn~LI~~y~k  255 (883)
                      +...-|.......+.=.-..|..-.+++.+.+                          +-|..     ..--.|+--|.+
T Consensus       218 StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~  297 (557)
T KOG3785|consen  218 STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLN  297 (557)
T ss_pred             cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecc
Confidence            23444544443333211111222222222211                          01110     111234445778


Q ss_pred             cCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHH--HHHcC----CcccHHHHHHHHHHhHhccCCCCCCHHH-HHHHHH
Q 002761          256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA--YTRAE----SYDRVQDVAELLGMMVEDHKRLQPNVKT-YALLVE  328 (883)
Q Consensus       256 ~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~a--y~~~G----~~d~~~eAl~lf~~M~~~~~gi~Pd~~T-y~~LI~  328 (883)
                      .+++.+|..+...+.      +.+..-|  ++.|  ++..|    .-+...-|.+.|+-.-+  ++..-|.+. -.++.+
T Consensus       298 q~dVqeA~~L~Kdl~------PttP~Ey--ilKgvv~aalGQe~gSreHlKiAqqffqlVG~--Sa~ecDTIpGRQsmAs  367 (557)
T KOG3785|consen  298 QNDVQEAISLCKDLD------PTTPYEY--ILKGVVFAALGQETGSREHLKIAQQFFQLVGE--SALECDTIPGRQSMAS  367 (557)
T ss_pred             cccHHHHHHHHhhcC------CCChHHH--HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcc--cccccccccchHHHHH
Confidence            888888888887776      3333223  2332  22222    22233345555543333  444444332 245556


Q ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHH
Q 002761          329 CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYR  408 (883)
Q Consensus       329 a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~  408 (883)
                      ++.-.-.+++.+-+++.+...........        | .+..+++..|++.+|.++|-+.....+  .+..+     |.
T Consensus       368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn--------~-N~AQAk~atgny~eaEelf~~is~~~i--kn~~~-----Y~  431 (557)
T KOG3785|consen  368 YFFLSFQFDDVLTYLNSIESYFTNDDDFN--------L-NLAQAKLATGNYVEAEELFIRISGPEI--KNKIL-----YK  431 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcchhh--------h-HHHHHHHHhcChHHHHHHHhhhcChhh--hhhHH-----HH
Confidence            66666778888888888776444333331        2 467899999999999999987744433  33332     44


Q ss_pred             HHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHHHHH-HhhchHHHHH
Q 002761          409 TLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRC-LEDGKKYHRK  487 (883)
Q Consensus       409 ~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~~~c-~~g~~~~A~~  487 (883)
                      ++                    |++...+.|..+-|+.++-.+   .-..  ..|   +|+ .+|..-| +.+.+-.|.+
T Consensus       432 s~--------------------LArCyi~nkkP~lAW~~~lk~---~t~~--e~f---sLL-qlIAn~CYk~~eFyyaaK  482 (557)
T KOG3785|consen  432 SM--------------------LARCYIRNKKPQLAWDMMLKT---NTPS--ERF---SLL-QLIANDCYKANEFYYAAK  482 (557)
T ss_pred             HH--------------------HHHHHHhcCCchHHHHHHHhc---CCch--hHH---HHH-HHHHHHHHHHHHHHHHHH
Confidence            43                    445555588888888877432   2211  224   122 2333334 4566778888


Q ss_pred             HHHHHhcCCCccccC-CChhHHHHHHHHHHhhhcCCCccccCcccchHHHHHHHHHHHhhCCCCChhhHH
Q 002761          488 LLRTLQNEGPAVLGD-VSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRN  556 (883)
Q Consensus       488 Ll~eM~~~G~~~lls-~~~~~~~~vi~~l~k~gk~~~~~v~K~~g~S~~ev~~l~~ef~~~g~~~~~~~~  556 (883)
                      -|+++......|--. |......-+...++..         |..+.-...+.+.+|-+...+  +.++.-
T Consensus       483 AFd~lE~lDP~pEnWeGKRGACaG~f~~l~~~---------~~~~~p~~~~rEVvhllr~~~--nsq~E~  541 (557)
T KOG3785|consen  483 AFDELEILDPTPENWEGKRGACAGLFRQLANH---------KTDPIPISQMREVVHLLRMKP--NSQCEF  541 (557)
T ss_pred             hhhHHHccCCCccccCCccchHHHHHHHHHcC---------CCCCCchhHHHHHHHHHHhCC--CchHHH
Confidence            888887777666222 3334445555555541         222233445666777666555  444444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.52  E-value=0.014  Score=66.15  Aligned_cols=222  Identities=12%  Similarity=0.045  Sum_probs=130.0

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG  158 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A  158 (883)
                      +.-+|+.-.|..-|+..+.....++. .|--+-..|+...+.++....|++....... |..+|..--..+.-.++++.|
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A  413 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA  413 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence            44467777777777777765422222 2555666677777777777777776554322 344554444444455667777


Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761          159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG  238 (883)
Q Consensus       159 ~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G  238 (883)
                      ..=|+..+......-..|--+--+.-|.+++++++..|++.+++ ++-....||..-..+...++++.|.+.|+......
T Consensus       414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE  492 (606)
T KOG0547|consen  414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE  492 (606)
T ss_pred             HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence            77777766643221115555555666677777777777776653 44445677777777777777777777777665432


Q ss_pred             CC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 002761          239 RM-------ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV  310 (883)
Q Consensus       239 ~~-------Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~  310 (883)
                      -.       +...+--+++-.- -.+++..|.+++++..+  - -+.....|-+|-..-.+.|   ++++|+++|++-.
T Consensus       493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~-Dpkce~A~~tlaq~~lQ~~---~i~eAielFEksa  564 (606)
T KOG0547|consen  493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--L-DPKCEQAYETLAQFELQRG---KIDEAIELFEKSA  564 (606)
T ss_pred             cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--c-CchHHHHHHHHHHHHHHHh---hHHHHHHHHHHHH
Confidence            11       1112222222222 22667777777766551  0 1223456666766677777   5557777776643

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.51  E-value=0.039  Score=69.26  Aligned_cols=230  Identities=13%  Similarity=0.065  Sum_probs=174.5

Q ss_pred             CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH
Q 002761          101 SPG-PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL-----HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ  174 (883)
Q Consensus       101 ~pd-~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd-----~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv  174 (883)
                      .|| ...|-..|.-..+.++.++|.+++++.+.. +.+.     ...|.++++.-...|.-+...++|+++.+. +.|-.
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-cd~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-CDAYT 1531 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-cchHH
Confidence            454 567888999999999999999999988653 3221     235777777777778888899999999885 34445


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 002761          175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM-ATTFHFNHLLSCQ  253 (883)
Q Consensus       175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~-Pd~~tyn~LI~~y  253 (883)
                      +|..|...|.+.+..++|-++|+.|.++ +.-....|...+..+.+.++-+.|..++.+..+.=-+ -.+-...-.+..-
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            8999999999999999999999999874 2245588999999999999999999999887764211 1234445556666


Q ss_pred             HHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH--HHHHHHHHHHH
Q 002761          254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV--KTYALLVECFT  331 (883)
Q Consensus       254 ~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~--~Ty~~LI~a~~  331 (883)
                      .++|+.+.+..+|+...   ...+.-.-.|+..|..=.++|   ....+..+|++...  .++.|-.  +.|.-.+..=-
T Consensus      1611 Fk~GDaeRGRtlfEgll---~ayPKRtDlW~VYid~eik~~---~~~~vR~lfeRvi~--l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLL---SAYPKRTDLWSVYIDMEIKHG---DIKYVRDLFERVIE--LKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred             hhcCCchhhHHHHHHHH---hhCccchhHHHHHHHHHHccC---CHHHHHHHHHHHHh--cCCChhHhHHHHHHHHHHHH
Confidence            78999999999999987   223446678999999999999   66689999999988  5676643  44555555444


Q ss_pred             HcCCHHHHHH
Q 002761          332 KYCAVTEAIR  341 (883)
Q Consensus       332 k~G~~eeA~~  341 (883)
                      ..|+-..++.
T Consensus      1683 ~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1683 SHGDEKNVEY 1692 (1710)
T ss_pred             hcCchhhHHH
Confidence            5555443333

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.46  E-value=0.012  Score=62.20  Aligned_cols=184  Identities=11%  Similarity=0.014  Sum_probs=99.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCh-hH--H
Q 002761          103 GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH----ETLIALARLFGSKGLATKGLEILAAMEKINYDI-RQ--A  175 (883)
Q Consensus       103 d~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~----~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~p-dv--t  175 (883)
                      ....+-.+...|.+.|++++|...|++....  .|+.    .++..+..++.+.|+++.|...++.+.+..... ..  +
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            4456666666777777888888877776653  2321    355666677777778888888887777654321 11  3


Q ss_pred             HHHHHHHHHHC--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 002761          176 WLILVEELVRN--------KYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF  246 (883)
Q Consensus       176 yn~LI~~y~k~--------G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~ty  246 (883)
                      +..+-..|.+.        |+.+.|.+.|+.+...  .|+. ..+..+... ..   ....      ..        ...
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~~------~~--------~~~  169 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRNR------LA--------GKE  169 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHHH------HH--------HHH
Confidence            33333444443        5677777777777653  2332 122111110 00   0000      00        001


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 002761          247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE  311 (883)
Q Consensus       247 n~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~  311 (883)
                      -.+-..|.+.|++.+|...|........+-+.....+..+..+|.+.|   +.++|..+++.+..
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg---~~~~A~~~~~~l~~  231 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLG---LKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh
Confidence            134445666777777777776655200111223556666777777777   34466666666655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.44  E-value=0.00014  Score=50.93  Aligned_cols=30  Identities=20%  Similarity=0.429  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 002761          365 PLSLYLRALCREGRIIELLEALEAMAKDNQ  394 (883)
Q Consensus       365 tYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi  394 (883)
                      |||+||++|++.|++++|.++|++|.+.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            699999999999999999999999999885

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.41  E-value=0.00013  Score=51.10  Aligned_cols=29  Identities=38%  Similarity=0.649  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761          210 IYDLMIAEDCKAGDHSNALEIAYEMEAAG  238 (883)
Q Consensus       210 tyn~LI~a~~k~g~~eeA~~lf~~M~~~G  238 (883)
                      |||+||++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555444

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.37  Score=53.99  Aligned_cols=272  Identities=11%  Similarity=0.012  Sum_probs=171.0

Q ss_pred             CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHH
Q 002761          100 LSPGPRSFHGLVVAYTLN--GDHEGAMHSLKRELSAG-VRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAW  176 (883)
Q Consensus       100 ~~pd~~tyn~LI~a~~~~--g~~~~A~~lf~~M~~~G-i~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvty  176 (883)
                      +.|+..+....|.++++.  ++...|..++--+.... ++-|......+-+.+...|+..+|...|++....++..-...
T Consensus       190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M  269 (564)
T KOG1174|consen  190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM  269 (564)
T ss_pred             cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence            444445555666666653  45555555554443333 555677788999999999999999999998876543111122


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 002761          177 LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC  256 (883)
Q Consensus       177 n~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~  256 (883)
                      ...--.+.+.|+.++...+...+.... .-+...|-.-...+....++..|+.+-+.-++..-. ++..|-.=-..+...
T Consensus       270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~  347 (564)
T KOG1174|consen  270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIAL  347 (564)
T ss_pred             HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhc
Confidence            222233467788888777777765421 122234444444455677888888888777664311 233332223456678


Q ss_pred             CCHHHHHHHHHHchhCCCCCC-CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHH-HHH-HHc
Q 002761          257 GIPEVAFATFENMEYGEDYMK-PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV-ECF-TKY  333 (883)
Q Consensus       257 G~~e~A~~lf~~M~~g~~gi~-pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI-~a~-~k~  333 (883)
                      |+.+.|.--|+....    +. -+..+|.-|+..|.-.|   +..+|+-+-+...+   -+.-+..|.+.+- ..| -..
T Consensus       348 ~R~~~A~IaFR~Aq~----Lap~rL~~Y~GL~hsYLA~~---~~kEA~~~An~~~~---~~~~sA~~LtL~g~~V~~~dp  417 (564)
T KOG1174|consen  348 ERHTQAVIAFRTAQM----LAPYRLEIYRGLFHSYLAQK---RFKEANALANWTIR---LFQNSARSLTLFGTLVLFPDP  417 (564)
T ss_pred             cchHHHHHHHHHHHh----cchhhHHHHHHHHHHHHhhc---hHHHHHHHHHHHHH---HhhcchhhhhhhcceeeccCc
Confidence            999999999987551    23 47889999999999999   77798887777654   2444555544331 222 222


Q ss_pred             CCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 002761          334 CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD  392 (883)
Q Consensus       334 G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~  392 (883)
                      .--++|..+++.-.+.  .|..+.       ..+.+...+...|+.++++.++++-...
T Consensus       418 ~~rEKAKkf~ek~L~~--~P~Y~~-------AV~~~AEL~~~Eg~~~D~i~LLe~~L~~  467 (564)
T KOG1174|consen  418 RMREKAKKFAEKSLKI--NPIYTP-------AVNLIAELCQVEGPTKDIIKLLEKHLII  467 (564)
T ss_pred             hhHHHHHHHHHhhhcc--CCccHH-------HHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence            3347788888776542  222221       3467778888999999999999987543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.39  E-value=0.49  Score=55.26  Aligned_cols=179  Identities=10%  Similarity=0.009  Sum_probs=93.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCc
Q 002761          276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK  354 (883)
Q Consensus       276 i~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~  354 (883)
                      ..|... +.+++....+...- ...++.+++..--.   +..-+ ....-.++.-....|+++.|.+++........  +
T Consensus       336 ~~p~~~-~~~ll~~~t~~~~~-~~~ka~e~L~~~~~---~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~--s  408 (652)
T KOG2376|consen  336 MSPESL-FPILLQEATKVREK-KHKKAIELLLQFAD---GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK--S  408 (652)
T ss_pred             cCchHH-HHHHHHHHHHHHHH-HHhhhHHHHHHHhc---cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh--h
Confidence            344443 44444444443311 35567777776654   33222 33444556677889999999999983331100  0


Q ss_pred             cccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHH
Q 002761          355 VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARY  434 (883)
Q Consensus       355 ~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~  434 (883)
                      .+......|.+..+++..|.+.+..+-|-.++++-...-..--+...    ....++                + ..+.+
T Consensus       409 s~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~----~l~~~~----------------~-~aa~f  467 (652)
T KOG2376|consen  409 SILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI----ALLSLM----------------R-EAAEF  467 (652)
T ss_pred             hhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch----HHHhHH----------------H-HHhHH
Confidence            00011222335578888889988888888888776432110000000    011111                1 12222


Q ss_pred             HHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHHHHHHhhchHHHHHHHH
Q 002761          435 ISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLR  490 (883)
Q Consensus       435 ~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~~~c~~g~~~~A~~Ll~  490 (883)
                      -...|..++|..+++++.+. ..+|....      ..++.++|+. ..+.|..+-.
T Consensus       468 ~lr~G~~~ea~s~leel~k~-n~~d~~~l------~~lV~a~~~~-d~eka~~l~k  515 (652)
T KOG2376|consen  468 KLRHGNEEEASSLLEELVKF-NPNDTDLL------VQLVTAYARL-DPEKAESLSK  515 (652)
T ss_pred             HHhcCchHHHHHHHHHHHHh-CCchHHHH------HHHHHHHHhc-CHHHHHHHhh
Confidence            23369999999999987653 12333333      2555566665 3445555543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.36  E-value=0.021  Score=60.27  Aligned_cols=188  Identities=15%  Similarity=0.000  Sum_probs=114.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-hh-H-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCC-CCH-HHHH
Q 002761          138 LHETLIALARLFGSKGLATKGLEILAAMEKINYD-IR-Q-AWLILVEELVRNKYLEDANKVFLRGAKGGLR-ATD-EIYD  212 (883)
Q Consensus       138 d~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~-pd-v-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~-pd~-~tyn  212 (883)
                      ....+..+...+.+.|+++.|...|+++.+.... |. . ++..+...|.+.|++++|...|+++.+..-. |.. .++.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence            4556677777777888888888888887765432 21 2 5666777788888888888888887763211 111 1333


Q ss_pred             HHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHH
Q 002761          213 LMIAEDCKA--------GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN  284 (883)
Q Consensus       213 ~LI~a~~k~--------g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn  284 (883)
                      .+-.++.+.        |++++|.+.|+.+...... +...+.++... ..   .      .....          ...-
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~-~~---~------~~~~~----------~~~~  170 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRM-DY---L------RNRLA----------GKEL  170 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHH-HH---H------HHHHH----------HHHH
Confidence            344444433        5566777777776654221 12222211111 00   0      00000          0112


Q ss_pred             HHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002761          285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYE  350 (883)
Q Consensus       285 ~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~  350 (883)
                      .+...|.+.|   +..+|+..|....... .-.| ....+..+..++.+.|++++|..+++.+...+
T Consensus       171 ~~a~~~~~~g---~~~~A~~~~~~al~~~-p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       171 YVARFYLKRG---AYVAAINRFETVVENY-PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             HHHHHHHHcC---ChHHHHHHHHHHHHHC-CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            4556788899   6669999999988731 1123 34678889999999999999999999887543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.34  E-value=0.58  Score=55.20  Aligned_cols=323  Identities=16%  Similarity=0.108  Sum_probs=179.4

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHhcC
Q 002761           81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAG-VRPLHETLIALA------RLFGSKG  153 (883)
Q Consensus        81 k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~G-i~Pd~~ty~~LI------~a~~~~g  153 (883)
                      +.|++......-.+..+.. +.....|-.+..++.-.|+...|..++++..+.- -.|+...|.-..      ....+.|
T Consensus       121 QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g  199 (700)
T KOG1156|consen  121 QMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAG  199 (700)
T ss_pred             HHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence            3344454444444444322 2345678888888888899999999988887654 246666654332      2345567


Q ss_pred             CHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCChHHHH-HH
Q 002761          154 LATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDC-KAGDHSNAL-EI  230 (883)
Q Consensus       154 ~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~-k~g~~eeA~-~l  230 (883)
                      .++.|.+.+..-... +.... .--+-.+.+.+.+++++|..++..+...+  ||.+-|+-.+..+. +.-+.-++. .+
T Consensus       200 ~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~l  276 (700)
T KOG1156|consen  200 SLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKAL  276 (700)
T ss_pred             cHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            777777665443322 21222 23355667888899999999999988754  88877776555444 444444444 66


Q ss_pred             HHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHH----HHH
Q 002761          231 AYEMEAAG---RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ----DVA  303 (883)
Q Consensus       231 f~~M~~~G---~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~----eAl  303 (883)
                      |....+.-   -.|-....+.+..    ..-.+....++..+.  +.|+++--.   .+.+-|-.-.   +..    -|.
T Consensus       277 y~~ls~~y~r~e~p~Rlplsvl~~----eel~~~vdkyL~~~l--~Kg~p~vf~---dl~SLyk~p~---k~~~le~Lvt  344 (700)
T KOG1156|consen  277 YAILSEKYPRHECPRRLPLSVLNG----EELKEIVDKYLRPLL--SKGVPSVFK---DLRSLYKDPE---KVAFLEKLVT  344 (700)
T ss_pred             HHHHhhcCcccccchhccHHHhCc----chhHHHHHHHHHHHh--hcCCCchhh---hhHHHHhchh---HhHHHHHHHH
Confidence            66554431   1111111111111    111222233444444  344443222   2222221111   111    122


Q ss_pred             HHHHHhHhcc--------CCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHH
Q 002761          304 ELLGMMVEDH--------KRLQPNVKTY--ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL  373 (883)
Q Consensus       304 ~lf~~M~~~~--------~gi~Pd~~Ty--~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y  373 (883)
                      .+.+.+...+        +--.|....|  -.++..|-+.|+++.|..+.+....+  .|+++.       .|-+=-..+
T Consensus       345 ~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliE-------ly~~KaRI~  415 (700)
T KOG1156|consen  345 SYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIE-------LYLVKARIF  415 (700)
T ss_pred             HHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHH-------HHHHHHHHH
Confidence            2222221110        0014555444  45677899999999999999888642  333332       344555888


Q ss_pred             HHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcC
Q 002761          374 CREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK  453 (883)
Q Consensus       374 ~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~  453 (883)
                      +.+|.+++|..++++-.+...   +|..+        -..|                 +.++..+..+++|..+.....+
T Consensus       416 kH~G~l~eAa~~l~ea~elD~---aDR~I--------NsKc-----------------AKYmLrAn~i~eA~~~~skFTr  467 (700)
T KOG1156|consen  416 KHAGLLDEAAAWLDEAQELDT---ADRAI--------NSKC-----------------AKYMLRANEIEEAEEVLSKFTR  467 (700)
T ss_pred             HhcCChHHHHHHHHHHHhccc---hhHHH--------HHHH-----------------HHHHHHccccHHHHHHHHHhhh
Confidence            999999999999999988774   33221        1112                 2233447888888888876655


Q ss_pred             CCC
Q 002761          454 TPL  456 (883)
Q Consensus       454 ~g~  456 (883)
                      .|.
T Consensus       468 ~~~  470 (700)
T KOG1156|consen  468 EGF  470 (700)
T ss_pred             ccc
Confidence            554

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.33  E-value=0.79  Score=56.38  Aligned_cols=130  Identities=13%  Similarity=0.132  Sum_probs=90.9

Q ss_pred             HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccH
Q 002761          220 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV  299 (883)
Q Consensus       220 k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~  299 (883)
                      .++-+++|..+|+...     .+....+.||.   ..+.++.|.+.-++..      .  ...|+.+..+-.+.|   .+
T Consensus      1060 ~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~--p~vWsqlakAQL~~~---~v 1120 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------E--PAVWSQLAKAQLQGG---LV 1120 (1666)
T ss_pred             hhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------C--hHHHHHHHHHHHhcC---ch
Confidence            3444555555555332     23444445544   3456666666666655      3  356888888888888   77


Q ss_pred             HHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCH
Q 002761          300 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI  379 (883)
Q Consensus       300 ~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~  379 (883)
                      .+|++-|-+.        -|...|.-+|..+.+.|.+++-.+++...+++...|.+.          +.||-+|++.+++
T Consensus      1121 ~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id----------~eLi~AyAkt~rl 1182 (1666)
T KOG0985|consen 1121 KDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID----------SELIFAYAKTNRL 1182 (1666)
T ss_pred             HHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch----------HHHHHHHHHhchH
Confidence            7887765443        266789999999999999999999988777766555544          6899999999999


Q ss_pred             HHHHHHH
Q 002761          380 IELLEAL  386 (883)
Q Consensus       380 ~eA~~lf  386 (883)
                      .+-.+++
T Consensus      1183 ~elE~fi 1189 (1666)
T KOG0985|consen 1183 TELEEFI 1189 (1666)
T ss_pred             HHHHHHh
Confidence            8877665

>PLN02789 farnesyltranstransferase

Probab=97.32  E-value=0.11  Score=58.01  Aligned_cols=215  Identities=7%  Similarity=-0.058  Sum_probs=129.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 002761          108 HGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE-TLIALARLFGSKG-LATKGLEILAAMEKINYDIRQAWLILVEELVR  185 (883)
Q Consensus       108 n~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~-ty~~LI~a~~~~g-~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k  185 (883)
                      +.+-..+...+..++|+.+..+....  .|+.. +|+.--.++.+.| .+++++..++.+.+.....-.+|+..--.+.+
T Consensus        41 ~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~  118 (320)
T PLN02789         41 DYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK  118 (320)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH
Confidence            33333444556777777777777653  44443 3444444444555 56778888888777655444466655444555


Q ss_pred             CCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCH-
Q 002761          186 NKYL--EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC---GIP-  259 (883)
Q Consensus       186 ~G~~--eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~---G~~-  259 (883)
                      .|..  +++..+++.+.+.. +-|..+|+..-..+.+.|++++|++.+..+.+.... |...|+.....+.+.   |.. 
T Consensus       119 l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~  196 (320)
T PLN02789        119 LGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE  196 (320)
T ss_pred             cCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence            5542  56777777777643 234577887777777788888888888888877654 556666655555444   222 


Q ss_pred             ---HHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc-ccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHc
Q 002761          260 ---EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY-DRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKY  333 (883)
Q Consensus       260 ---e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~-d~~~eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a~~k~  333 (883)
                         +.+.....++..   -.+-|...|+-+...|...+.. .+..+|.+.+.+...    ..| +......|++.|+..
T Consensus       197 ~~~e~el~y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~----~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        197 AMRDSELKYTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS----KDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             ccHHHHHHHHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc----ccCCcHHHHHHHHHHHHhh
Confidence               345555544331   1144677788777777764311 122457777777654    233 456677778887763

>PLN02789 farnesyltranstransferase

Probab=97.32  E-value=0.099  Score=58.31  Aligned_cols=211  Identities=15%  Similarity=0.089  Sum_probs=148.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh--
Q 002761          148 LFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNK-YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH--  224 (883)
Q Consensus       148 a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G-~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~--  224 (883)
                      .+...+..++|+.+...+++.....-.+|+.--..+.+.| .+++++..++++.+... .+..+|+.--..+.+.|..  
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~  124 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAA  124 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhh
Confidence            3445678899999999999876544447887777777777 68999999999987542 3446787665556666653  


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC---cc-cHH
Q 002761          225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES---YD-RVQ  300 (883)
Q Consensus       225 eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~---~d-~~~  300 (883)
                      ++++.+++.+.+...+ |..+|+..--.+.+.|++++|.+.++++.  +.. ..|...|+.....+.+.|.   ++ ..+
T Consensus       125 ~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I--~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e  200 (320)
T PLN02789        125 NKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLL--EED-VRNNSAWNQRYFVITRSPLLGGLEAMRD  200 (320)
T ss_pred             HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHC-CCchhHHHHHHHHHHhccccccccccHH
Confidence            6788999898876543 78899999999999999999999999998  222 4567778877666665521   21 124


Q ss_pred             HHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHH
Q 002761          301 DVAELLGMMVEDHKRLQP-NVKTYALLVECFTKY----CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR  375 (883)
Q Consensus       301 eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a~~k~----G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~  375 (883)
                      +.+....+++.    ..| |...|+.+-..+...    +...+|..++.......+..         ......|++.|+.
T Consensus       201 ~el~y~~~aI~----~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s---------~~al~~l~d~~~~  267 (320)
T PLN02789        201 SELKYTIDAIL----ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH---------VFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHHHHHHH----hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc---------HHHHHHHHHHHHh
Confidence            57777767765    345 566777777777663    34566888887765532221         1146788999986


Q ss_pred             c
Q 002761          376 E  376 (883)
Q Consensus       376 ~  376 (883)
                      .
T Consensus       268 ~  268 (320)
T PLN02789        268 G  268 (320)
T ss_pred             h
Confidence            4

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.30  E-value=0.13  Score=65.54  Aligned_cols=266  Identities=12%  Similarity=0.070  Sum_probs=173.2

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHH
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPG----PRSFHGLVVAYTLNGDHEGAMHSLKRELSA----GV-RPLHETLIALARLF  149 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G~~pd----~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~----Gi-~Pd~~ty~~LI~a~  149 (883)
                      +...|+++.|...+++....--..+    ...++.+-..+...|++++|...+.+....    |- .+-..++..+-..+
T Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~  541 (903)
T PRK04841        462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL  541 (903)
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            4568999999999998775311112    234566667778899999999999887642    11 11123455666778


Q ss_pred             HhcCCHHHHHHHHHHHHHc----CCC--h-hH-HHHHHHHHHHHCCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHH
Q 002761          150 GSKGLATKGLEILAAMEKI----NYD--I-RQ-AWLILVEELVRNKYLEDANKVFLRGAKG--GLRAT--DEIYDLMIAE  217 (883)
Q Consensus       150 ~~~g~~~~A~~l~~~m~~~----g~~--p-dv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~--gi~pd--~~tyn~LI~a  217 (883)
                      ...|+++.|...+.+....    +..  + .. .+..+-..+...|++++|...+.+....  ...+.  ..++..+...
T Consensus       542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  621 (903)
T PRK04841        542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI  621 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence            8899999999998876652    221  1 12 4555666777789999999999887542  11122  3455556677


Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCH---HHHHHHHH
Q 002761          218 DCKAGDHSNALEIAYEMEAAGRMA-TTFHF-----NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT---ETYNCVIQ  288 (883)
Q Consensus       218 ~~k~g~~eeA~~lf~~M~~~G~~P-d~~ty-----n~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~---~tyn~LI~  288 (883)
                      +...|++++|.+.+.......-.. ....+     ...+..+...|+.+.|...+....  ........   ..+..+..
T Consensus       622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~--~~~~~~~~~~~~~~~~~a~  699 (903)
T PRK04841        622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAP--KPEFANNHFLQGQWRNIAR  699 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcC--CCCCccchhHHHHHHHHHH
Confidence            888999999999998875421111 11111     112345567899999999988766  22111111   12445667


Q ss_pred             HHHHcCCcccHHHHHHHHHHhHhcc--CCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002761          289 AYTRAESYDRVQDVAELLGMMVEDH--KRLQPNV-KTYALLVECFTKYCAVTEAIRHFRALQNY  349 (883)
Q Consensus       289 ay~~~G~~d~~~eAl~lf~~M~~~~--~gi~Pd~-~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~  349 (883)
                      ++...|   +..+|..++.+.....  .|..++. .+...+-.++.+.|+.++|...+......
T Consensus       700 ~~~~~g---~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        700 AQILLG---QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHcC---CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            788889   5568888888765410  2333322 34555566888999999999999998753

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=0.076  Score=56.88  Aligned_cols=92  Identities=15%  Similarity=0.140  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHH-HHHHHHH
Q 002761          107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL-ILVEELV  184 (883)
Q Consensus       107 yn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn-~LI~~y~  184 (883)
                      +++.|..+.+..++..|++++..-.+.  .| +....+.|-.+|-...++..|-..++++...-.... -|. ---..+-
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~-qYrlY~AQSLY   89 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE-QYRLYQAQSLY   89 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH-HHHHHHHHHHH
Confidence            455555555566666666665544333  22 444555555555566666666666666554322111 221 1123344


Q ss_pred             HCCCHHHHHHHHHHHHh
Q 002761          185 RNKYLEDANKVFLRGAK  201 (883)
Q Consensus       185 k~G~~eeA~~lf~~M~~  201 (883)
                      +.+.+.+|++|...|..
T Consensus        90 ~A~i~ADALrV~~~~~D  106 (459)
T KOG4340|consen   90 KACIYADALRVAFLLLD  106 (459)
T ss_pred             HhcccHHHHHHHHHhcC
Confidence            55555566665555543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=0.043  Score=58.67  Aligned_cols=193  Identities=9%  Similarity=0.002  Sum_probs=133.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 002761           72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIA-LARLFG  150 (883)
Q Consensus        72 ~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~-LI~a~~  150 (883)
                      +...+..+.+..++..|.+++..-.++. +.+....+.|-.+|-+..++..|-..+.++-..  .|-..-|.. -...+-
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY   89 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY   89 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence            4556667788889999999988877664 337788888889999999999999999988653  455444432 234455


Q ss_pred             hcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHH--HHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 002761          151 SKGLATKGLEILAAMEKINYDIRQ-AWLILVEE--LVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNA  227 (883)
Q Consensus       151 ~~g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~--y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA  227 (883)
                      +.+.+..|+.+...|...   ++. .-..-+.+  .-..+++..+..+.++....|   +..+.+..-....+.|+++.|
T Consensus        90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA  163 (459)
T KOG4340|consen   90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA  163 (459)
T ss_pred             HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence            677899999998888653   322 11112222  234678888888888876433   223333333445688999999


Q ss_pred             HHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCC
Q 002761          228 LEIAYEMEAA-GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK  277 (883)
Q Consensus       228 ~~lf~~M~~~-G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~  277 (883)
                      .+-|....+- |.. ....||.-+..| +.|+...|.+...++.  ++|++
T Consensus       164 vqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIi--eRG~r  210 (459)
T KOG4340|consen  164 VQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEII--ERGIR  210 (459)
T ss_pred             HHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHH--Hhhhh
Confidence            9999887764 455 456788766555 5578889999988888  56654

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.17  E-value=0.0034  Score=71.84  Aligned_cols=123  Identities=12%  Similarity=0.016  Sum_probs=96.6

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCh---hHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHH
Q 002761          134 GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI---RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI  210 (883)
Q Consensus       134 Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~p---dvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~t  210 (883)
                      +...+......+++.+....+++.+..++-......-..   +.|..++|..|.+.|..+.|..++..=..-|+-||..|
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            455577778888888888888888888877776652111   12556888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 002761          211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC  256 (883)
Q Consensus       211 yn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~  256 (883)
                      ||.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            8888888888888888888888888777777778887777777766

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.13  E-value=0.034  Score=65.88  Aligned_cols=189  Identities=16%  Similarity=0.103  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002761          175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA  254 (883)
Q Consensus       175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~  254 (883)
                      .--.+...+..+|-...|..+|++.         ..|.-+|.+|+..|+..+|..+..+-.+  -+||...|..+.+..-
T Consensus       400 ~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~  468 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH  468 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence            4456778899999999999999986         5688899999999999999999988877  4789999999999988


Q ss_pred             HcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHc
Q 002761          255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKY  333 (883)
Q Consensus       255 k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a~~k~  333 (883)
                      ....++.|.++++...      ..-..+|+-++   .+++   +..++.+.|+.-.+    +.| -..||-.+=.+..+.
T Consensus       469 d~s~yEkawElsn~~s------arA~r~~~~~~---~~~~---~fs~~~~hle~sl~----~nplq~~~wf~~G~~ALql  532 (777)
T KOG1128|consen  469 DPSLYEKAWELSNYIS------ARAQRSLALLI---LSNK---DFSEADKHLERSLE----INPLQLGTWFGLGCAALQL  532 (777)
T ss_pred             ChHHHHHHHHHhhhhh------HHHHHhhcccc---ccch---hHHHHHHHHHHHhh----cCccchhHHHhccHHHHHH
Confidence            8888999999998766      11122222222   2256   45588888887655    223 345676676777788


Q ss_pred             CCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcc
Q 002761          334 CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA  400 (883)
Q Consensus       334 G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~  400 (883)
                      +++..|.+.|..-....+..         ...||.+-.+|.+.|+-.+|...+.+-.+.+.. ++++
T Consensus       533 ek~q~av~aF~rcvtL~Pd~---------~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~i  589 (777)
T KOG1128|consen  533 EKEQAAVKAFHRCVTLEPDN---------AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQI  589 (777)
T ss_pred             hhhHHHHHHHHHHhhcCCCc---------hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCee
Confidence            99999999888776532221         226899999999999999999999998887753 5543

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.12  E-value=0.0052  Score=56.85  Aligned_cols=80  Identities=13%  Similarity=0.152  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHcCCCCCHHHH
Q 002761          176 WLILVEELVRNKYLEDANKVFLRGAKGGL-RATDEIYDLMIAEDCKAG--------DHSNALEIAYEMEAAGRMATTFHF  246 (883)
Q Consensus       176 yn~LI~~y~k~G~~eeA~~lf~~M~~~gi-~pd~~tyn~LI~a~~k~g--------~~eeA~~lf~~M~~~G~~Pd~~ty  246 (883)
                      ....|.-+...+++.....+|+.+++.|+ .|++.+||.++.+.++..        ++-+.+.+|+.|...+++|+..||
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY  107 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY  107 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence            33445555555777777777777777777 677777777777766543        244566677777777777777777


Q ss_pred             HHHHHHHHH
Q 002761          247 NHLLSCQAT  255 (883)
Q Consensus       247 n~LI~~y~k  255 (883)
                      |.+|..+.+
T Consensus       108 nivl~~Llk  116 (120)
T PF08579_consen  108 NIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHH
Confidence            777776654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.12  E-value=0.004  Score=64.23  Aligned_cols=95  Identities=20%  Similarity=0.171  Sum_probs=74.3

Q ss_pred             CCCChhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----------
Q 002761           50 GDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG-----------  118 (883)
Q Consensus        50 v~Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g-----------  118 (883)
                      -..|-.+|..+|..+.+...          .|.|.++-....+..|.+.|+..|..+||.||+.+=+..           
T Consensus        43 ~~k~K~~F~~~V~~f~~~~~----------~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F  112 (228)
T PF06239_consen   43 QAKDKATFLEAVDIFKQRDV----------RRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF  112 (228)
T ss_pred             ccccHHHHHHHHHHHHhcCC----------CCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence            45677788888888876532          367888999999999999999999999999999886532           


Q ss_pred             -----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002761          119 -----DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL  154 (883)
Q Consensus       119 -----~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~  154 (883)
                           +.+.|++++++|...|+-||..|+..|++.+++.+.
T Consensus       113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                 234577788888888888888888888887766654

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.11  E-value=0.93  Score=53.03  Aligned_cols=185  Identities=14%  Similarity=0.138  Sum_probs=103.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHH
Q 002761           73 MEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIA--LARLFG  150 (883)
Q Consensus        73 ~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~--LI~a~~  150 (883)
                      ...+..+.+.|++++|.+....+...+ +-+...+.+=+.++.+.+.+++|+.+.+.-..      ..+++.  +=.+||
T Consensus        16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc   88 (652)
T KOG2376|consen   16 LTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYC   88 (652)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHH
Confidence            344556677788888888888887665 44566677777777888888888865543110      111111  233443


Q ss_pred             --hcCCHHHHHHHHHHHHHcCCChhH--HHHHHHHHHHHCCCHHHHHHHHHHHHhCCC----------------------
Q 002761          151 --SKGLATKGLEILAAMEKINYDIRQ--AWLILVEELVRNKYLEDANKVFLRGAKGGL----------------------  204 (883)
Q Consensus       151 --~~g~~~~A~~l~~~m~~~g~~pdv--tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi----------------------  204 (883)
                        +.+..++|...+.     |..+..  +-..--..+-+.|++++|+.+|+.+.+.+.                      
T Consensus        89 ~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~  163 (652)
T KOG2376|consen   89 EYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQL  163 (652)
T ss_pred             HHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHH
Confidence              4566666666665     222221  222223345566777777777766643331                      


Q ss_pred             ------CCCHHHHHHHHH---HHHHcCChHHHHHHHHHHHHcCC-------------CCCHHHH-HHHHHHHHHcCCHHH
Q 002761          205 ------RATDEIYDLMIA---EDCKAGDHSNALEIAYEMEAAGR-------------MATTFHF-NHLLSCQATCGIPEV  261 (883)
Q Consensus       205 ------~pd~~tyn~LI~---a~~k~g~~eeA~~lf~~M~~~G~-------------~Pd~~ty-n~LI~~y~k~G~~e~  261 (883)
                            .| ..||..+-+   .+...|++.+|++++....+.+.             .-.+.+. --|--.+-..|+-++
T Consensus       164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e  242 (652)
T KOG2376|consen  164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE  242 (652)
T ss_pred             HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence                  12 124444433   34467888888888887733221             1011111 123334567788888


Q ss_pred             HHHHHHHch
Q 002761          262 AFATFENME  270 (883)
Q Consensus       262 A~~lf~~M~  270 (883)
                      |..++....
T Consensus       243 a~~iy~~~i  251 (652)
T KOG2376|consen  243 ASSIYVDII  251 (652)
T ss_pred             HHHHHHHHH
Confidence            888887766

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.73  Score=51.73  Aligned_cols=291  Identities=10%  Similarity=-0.002  Sum_probs=159.7

Q ss_pred             HHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhc
Q 002761           78 QHARNRDAPRVNDVIYDMIAAG-LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHET----LIALARLFGSK  152 (883)
Q Consensus        78 ~~~k~G~~~~A~~lf~~M~~~G-~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~t----y~~LI~a~~~~  152 (883)
                      +.+..++...|...+--+.... ++-|+.....+-..+...|+.++|...|++.+.  +.|+..+    |..|+   .+.
T Consensus       205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL---~~e  279 (564)
T KOG1174|consen  205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLL---GQE  279 (564)
T ss_pred             HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHH---Hhc
Confidence            4455566666666655554433 445778889999999999999999999988654  3444333    44443   456


Q ss_pred             CCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002761          153 GLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY  232 (883)
Q Consensus       153 g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~  232 (883)
                      |+++....+...+....-.....|-.-...+....++..|+.+-.+-.+.. +.+...|-.=-..+...+++++|.--|+
T Consensus       280 g~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR  358 (564)
T KOG1174|consen  280 GGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFR  358 (564)
T ss_pred             cCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHH
Confidence            667666666655554321000123333333444566777777766665522 1122333333345566777777777777


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhc
Q 002761          233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED  312 (883)
Q Consensus       233 ~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~  312 (883)
                      ..+... +-+...|--|+..|.-.|++.+|.-+-+....   -+.-+..+.+- +.+....-.+.--++|.++++.-.+ 
T Consensus       359 ~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~---~~~~sA~~LtL-~g~~V~~~dp~~rEKAKkf~ek~L~-  432 (564)
T KOG1174|consen  359 TAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR---LFQNSARSLTL-FGTLVLFPDPRMREKAKKFAEKSLK-  432 (564)
T ss_pred             HHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH---Hhhcchhhhhh-hcceeeccCchhHHHHHHHHHhhhc-
Confidence            766542 23566777777777777777776654443221   11122333222 2111111111123466666665543 


Q ss_pred             cCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002761          313 HKRLQPNVK-TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK  391 (883)
Q Consensus       313 ~~gi~Pd~~-Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~  391 (883)
                         +.|+-. ..+.+-.-|...|..+.+..+++.-.......+          .-+.|-+.+...+.+++|++.|..-..
T Consensus       433 ---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~----------LH~~Lgd~~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  433 ---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN----------LHNHLGDIMRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             ---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH----------HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence               555532 233444556666777777777766654221111          125666666666777777776666554


Q ss_pred             CC
Q 002761          392 DN  393 (883)
Q Consensus       392 ~G  393 (883)
                      .+
T Consensus       500 ~d  501 (564)
T KOG1174|consen  500 QD  501 (564)
T ss_pred             cC
Confidence            43

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.10  E-value=0.0061  Score=69.83  Aligned_cols=117  Identities=14%  Similarity=0.090  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002761          175 AWLILVEELVRNKYLEDANKVFLRGAKG--GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC  252 (883)
Q Consensus       175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~--gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~  252 (883)
                      ....+++......+++++..++.+....  ....-..|..++|+.|.+.|..++++.++..=...|+-||.+|||.||+.
T Consensus        68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~  147 (429)
T PF10037_consen   68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH  147 (429)
T ss_pred             HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence            5566666666666677777777766653  11112234457777777777777777777777777777777777777777


Q ss_pred             HHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 002761          253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA  293 (883)
Q Consensus       253 y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~  293 (883)
                      +.+.|++..|.++...|.  ......+..|+.-.+.+|.+-
T Consensus       148 fl~~~~~~~A~~V~~~~~--lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  148 FLKKGNYKSAAKVATEMM--LQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HhhcccHHHHHHHHHHHH--HhhccCCchHHHHHHHHHHHh
Confidence            777777777777777776  455556666666666666665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.04  E-value=0.0066  Score=56.21  Aligned_cols=77  Identities=13%  Similarity=0.153  Sum_probs=62.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002761           75 ELMQHARNRDAPRVNDVIYDMIAAGL-SPGPRSFHGLVVAYTLNG--------DHEGAMHSLKRELSAGVRPLHETLIAL  145 (883)
Q Consensus        75 ~L~~~~k~G~~~~A~~lf~~M~~~G~-~pd~~tyn~LI~a~~~~g--------~~~~A~~lf~~M~~~Gi~Pd~~ty~~L  145 (883)
                      .+..+...+++.....+|..+++.|+ .|++.+||.++.+.++..        ++-..+.+|..|...+++|+..||+.+
T Consensus        31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv  110 (120)
T PF08579_consen   31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV  110 (120)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence            34455566888999999999999998 899999999999888764        244677888889888899999999998


Q ss_pred             HHHHHh
Q 002761          146 ARLFGS  151 (883)
Q Consensus       146 I~a~~~  151 (883)
                      +..+.+
T Consensus       111 l~~Llk  116 (120)
T PF08579_consen  111 LGSLLK  116 (120)
T ss_pred             HHHHHH
Confidence            888754

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.03  E-value=0.028  Score=55.05  Aligned_cols=102  Identities=15%  Similarity=-0.036  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHC
Q 002761          107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRN  186 (883)
Q Consensus       107 yn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~  186 (883)
                      +..+-..+.+.|++++|...|+...... +.+...|..+-.++.+.|++++|...|....+........+..+-.+|.+.
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            4456667777888888888888776543 225666777777788888888888888888776543323777777778888


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHH
Q 002761          187 KYLEDANKVFLRGAKGGLRATDEIY  211 (883)
Q Consensus       187 G~~eeA~~lf~~M~~~gi~pd~~ty  211 (883)
                      |+.++|...|+....  +.|+..-|
T Consensus       106 g~~~eAi~~~~~Al~--~~p~~~~~  128 (144)
T PRK15359        106 GEPGLAREAFQTAIK--MSYADASW  128 (144)
T ss_pred             CCHHHHHHHHHHHHH--hCCCChHH
Confidence            888888888887766  33554333

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.84  E-value=0.1  Score=63.99  Aligned_cols=132  Identities=11%  Similarity=0.032  Sum_probs=89.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHH
Q 002761          136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLM  214 (883)
Q Consensus       136 ~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~L  214 (883)
                      ..+...+-.|..+..+.|.+++|..+++...+...........+...+.+.+++++|...+++.....  |+. ...+.+
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~  160 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLE  160 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHH
Confidence            34566677777777777777777777777776533222266677777777777777777777776633  444 556666


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761          215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME  270 (883)
Q Consensus       215 I~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~  270 (883)
                      -.++.+.|++++|..+|++....+ .-+..++.++-..+-+.|+.++|...|+...
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~  215 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGL  215 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            666777777777777777777632 2236667777777777777777777777665

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=96.84  E-value=0.058  Score=57.04  Aligned_cols=124  Identities=16%  Similarity=0.061  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 002761          106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVR  185 (883)
Q Consensus       106 tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k  185 (883)
                      ..+.++....++|++..|...|++.... -++|..+|+.+--+|-+.|+.+.|..-|.+..+.-..-...+|.|--.|.-
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L  180 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL  180 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence            3444455555555555555555544322 234455555555555555555555555555544433222344444444444


Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002761          186 NKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIA  231 (883)
Q Consensus       186 ~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf  231 (883)
                      .|+.+.|..++..-...+. .|...-..+.-.....|++.+|..+.
T Consensus       181 ~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         181 RGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             cCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence            5555555555554443321 23333344444444455555554443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.81  E-value=0.0086  Score=61.80  Aligned_cols=105  Identities=15%  Similarity=0.170  Sum_probs=71.1

Q ss_pred             CCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCH
Q 002761          206 ATDEIYDLMIAEDCK-----AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT  280 (883)
Q Consensus       206 pd~~tyn~LI~a~~k-----~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~  280 (883)
                      .|..+|..+|..|.+     .|.++=....++.|.+.|+.-|..+|+.||+.+=| |.+                 .|..
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f-----------------vp~n  106 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF-----------------VPRN  106 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc-----------------cccc
Confidence            566777788877764     35677777778888888888888888888877654 221                 1111


Q ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCH
Q 002761          281 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV  336 (883)
Q Consensus       281 ~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~  336 (883)
                       .+-++..-|-+     +.+-|++++++|..  .|+.||..|+..|++.|.+.+..
T Consensus       107 -~fQ~~F~hyp~-----Qq~c~i~lL~qME~--~gV~Pd~Et~~~ll~iFG~~s~p  154 (228)
T PF06239_consen  107 -FFQAEFMHYPR-----QQECAIDLLEQMEN--NGVMPDKETEQMLLNIFGRKSHP  154 (228)
T ss_pred             -HHHHHhccCcH-----HHHHHHHHHHHHHH--cCCCCcHHHHHHHHHHhccccHH
Confidence             11112222222     44577888888887  68888888888888888887754

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.81  E-value=0.15  Score=62.47  Aligned_cols=147  Identities=12%  Similarity=0.044  Sum_probs=117.4

Q ss_pred             CChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 002761          170 YDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN  247 (883)
Q Consensus       170 ~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn  247 (883)
                      +..++ .+-.|-....+.|+.++|..+++...+  +.|+. .....+...+.+.+++++|+..++........ +....+
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~  158 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL  158 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence            33445 788888899999999999999999987  56776 56778889999999999999999999886432 555667


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHH
Q 002761          248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV  327 (883)
Q Consensus       248 ~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI  327 (883)
                      .+-.++.+.|++++|..+|++..  . ...-+..++.++-..+-..|   +.++|...|+....   ...|-...|+-++
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~--~-~~p~~~~~~~~~a~~l~~~G---~~~~A~~~~~~a~~---~~~~~~~~~~~~~  229 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLS--R-QHPEFENGYVGWAQSLTRRG---ALWRARDVLQAGLD---AIGDGARKLTRRL  229 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHH--h-cCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH---hhCcchHHHHHHH
Confidence            77788889999999999999998  3 22234788888899999999   67799999999886   4556667766655


Q ss_pred             H
Q 002761          328 E  328 (883)
Q Consensus       328 ~  328 (883)
                      .
T Consensus       230 ~  230 (694)
T PRK15179        230 V  230 (694)
T ss_pred             H
Confidence            3

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=96.79  E-value=0.048  Score=56.48  Aligned_cols=118  Identities=14%  Similarity=0.133  Sum_probs=67.4

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHHH
Q 002761           83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF-GSKGL--ATKGL  159 (883)
Q Consensus        83 G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~-~~~g~--~~~A~  159 (883)
                      ++.+++...+....+.. +.|...|..|-..|...|++++|...|++...... -|...+..+-.++ ...|+  .++|.
T Consensus        53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            33445555555544443 34566666666666666666666666666555321 1444455554442 44454  36666


Q ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Q 002761          160 EILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG  202 (883)
Q Consensus       160 ~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~  202 (883)
                      +++++..+.......++..+-..+.+.|++++|...|+++.+.
T Consensus       131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            6666666665443336666666666666666666666666553

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.76  E-value=0.054  Score=51.63  Aligned_cols=96  Identities=13%  Similarity=0.022  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 002761          105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELV  184 (883)
Q Consensus       105 ~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~  184 (883)
                      .....+...+.+.|++++|.+.|+.....+ +.+...+..+...+.+.|+++.|..++.+..+.+.....++..+-..|.
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   96 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL   96 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            334445555556666666666666655532 2244555556666666666666666666665554322225555555666


Q ss_pred             HCCCHHHHHHHHHHHHh
Q 002761          185 RNKYLEDANKVFLRGAK  201 (883)
Q Consensus       185 k~G~~eeA~~lf~~M~~  201 (883)
                      ..|+.+.|...|+...+
T Consensus        97 ~~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        97 ALGEPESALKALDLAIE  113 (135)
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            66666666666666555

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=96.75  E-value=0.31  Score=55.83  Aligned_cols=116  Identities=16%  Similarity=0.112  Sum_probs=54.8

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHH
Q 002761          117 NGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVF  196 (883)
Q Consensus       117 ~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf  196 (883)
                      .|.+++|...++.+... .+-|..-.......+.+.++..+|.+.++.+..........+-.+-.+|.+.|++.+|.+++
T Consensus       319 ~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L  397 (484)
T COG4783         319 AGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRIL  397 (484)
T ss_pred             hcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHH
Confidence            44555555555554432 11223333334444555555555555555555442222123444445555555555555555


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002761          197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM  234 (883)
Q Consensus       197 ~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M  234 (883)
                      +..... .+-|...|..|-.+|...|+..+|..-..++
T Consensus       398 ~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~  434 (484)
T COG4783         398 NRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG  434 (484)
T ss_pred             HHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            554432 2234455555555555555555555554444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=96.74  E-value=0.36  Score=51.21  Aligned_cols=158  Identities=15%  Similarity=0.087  Sum_probs=122.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHC
Q 002761          108 HGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRN  186 (883)
Q Consensus       108 n~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~  186 (883)
                      .-+-..+-..|+-+.+..+...... ...-|....+.+.....+.|++..|...|.+...... +|. +||.+--+|-+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence            4444556667777777766655322 1233555666688999999999999999999887653 444 999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002761          187 KYLEDANKVFLRGAKGGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT  265 (883)
Q Consensus       187 G~~eeA~~lf~~M~~~gi~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~l  265 (883)
                      |++++|..-|.+..+  +.|+ ...+|.|--.|.-.|+.+.|..++......+.. |..+-..|.......|+++.|..+
T Consensus       148 Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         148 GRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             cChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence            999999999999877  3343 477888888888899999999999998877544 666677788888999999999988


Q ss_pred             HHHch
Q 002761          266 FENME  270 (883)
Q Consensus       266 f~~M~  270 (883)
                      -..-.
T Consensus       225 ~~~e~  229 (257)
T COG5010         225 AVQEL  229 (257)
T ss_pred             ccccc
Confidence            76655

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=96.74  E-value=0.031  Score=66.22  Aligned_cols=239  Identities=11%  Similarity=0.069  Sum_probs=162.0

Q ss_pred             cCChHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002761           67 GLRLIFMEELM-QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIAL  145 (883)
Q Consensus        67 ~~~~~~~~~L~-~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~L  145 (883)
                      ...+..-..+. .+...|-+..|..+|++..         .|.-.|-+|+..|+..+|..+..+..+  -+||+.-|..+
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L  463 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL  463 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence            33333333333 3778899999999999865         578888999999999999888887766  47888888888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 002761          146 ARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS  225 (883)
Q Consensus       146 I~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~e  225 (883)
                      .+......-+++|.++++..-.+-   ...++.+   ..+.+++.++.+.|+.-.+.. +--..+|-.+-.+..+.+++.
T Consensus       464 GDv~~d~s~yEkawElsn~~sarA---~r~~~~~---~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q  536 (777)
T KOG1128|consen  464 GDVLHDPSLYEKAWELSNYISARA---QRSLALL---ILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ  536 (777)
T ss_pred             hhhccChHHHHHHHHHhhhhhHHH---HHhhccc---cccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence            888877777888888887654330   0122222   223788888888887755422 123367777777777888888


Q ss_pred             HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHH
Q 002761          226 NALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE  304 (883)
Q Consensus       226 eA~~lf~~M~~~G~~P-d~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~  304 (883)
                      .|.+.|..-...  .| +...||.+-.+|.+.|+-.+|...+.+..  +.+ .-+.-.|-.-+....+.|   ..++|++
T Consensus       537 ~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl--Kcn-~~~w~iWENymlvsvdvg---e~eda~~  608 (777)
T KOG1128|consen  537 AAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL--KCN-YQHWQIWENYMLVSVDVG---EFEDAIK  608 (777)
T ss_pred             HHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh--hcC-CCCCeeeechhhhhhhcc---cHHHHHH
Confidence            888888877653  44 45678999999999999999998888877  343 444455556666777888   4446666


Q ss_pred             HHHHhHhccCCCCCCHHHHHHHHHHHHH
Q 002761          305 LLGMMVEDHKRLQPNVKTYALLVECFTK  332 (883)
Q Consensus       305 lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k  332 (883)
                      .+++|... +...-|......++....+
T Consensus       609 A~~rll~~-~~~~~d~~vl~~iv~~~~~  635 (777)
T KOG1128|consen  609 AYHRLLDL-RKKYKDDEVLLIIVRTVLE  635 (777)
T ss_pred             HHHHHHHh-hhhcccchhhHHHHHHHHh
Confidence            66666543 2222255444444444433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.67  E-value=0.043  Score=62.61  Aligned_cols=125  Identities=15%  Similarity=0.118  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 002761          140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDC  219 (883)
Q Consensus       140 ~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~  219 (883)
                      +...+|++.+...++++.|..+|+++.+..  |++ ...|...|...++-.+|.+++.+.... .+-+....+.-...|.
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev-~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl  245 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV-AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLL  245 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH-HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence            334455666666677777777777777665  332 334566666677777777777776643 2234455555566677


Q ss_pred             HcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761          220 KAGDHSNALEIAYEMEAAGRMATTF-HFNHLLSCQATCGIPEVAFATFENME  270 (883)
Q Consensus       220 k~g~~eeA~~lf~~M~~~G~~Pd~~-tyn~LI~~y~k~G~~e~A~~lf~~M~  270 (883)
                      +.++++.|+.+.+++...  .|+.+ +|..|..+|.+.|+++.|+..++.+.
T Consensus       246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            777788888888777764  45443 77888888888888888888887776

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=96.66  E-value=0.17  Score=52.49  Aligned_cols=117  Identities=14%  Similarity=0.087  Sum_probs=65.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCC--hHHHH
Q 002761          152 KGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED-CKAGD--HSNAL  228 (883)
Q Consensus       152 ~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~-~k~g~--~eeA~  228 (883)
                      .++.+++...+....+........|..|-..|...|++++|...|++..+.. +-+...+..+-.++ ...|+  .++|.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            3444555555555555443222266666666666666666666666665532 12334555555443 44455  36666


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761          229 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME  270 (883)
Q Consensus       229 ~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~  270 (883)
                      +++++..+.... +..++..+-..+.+.|++++|...|+.+.
T Consensus       131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370        131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            666666665432 45556666666666666666666666665

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.93  Score=48.05  Aligned_cols=188  Identities=10%  Similarity=0.003  Sum_probs=130.8

Q ss_pred             CCHHHHHHHHHHHH---HCC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHH
Q 002761          118 GDHEGAMHSLKREL---SAG-VRPLHET-LIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDA  192 (883)
Q Consensus       118 g~~~~A~~lf~~M~---~~G-i~Pd~~t-y~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA  192 (883)
                      .+.++.++++.+|.   ..| ..|+..+ |--++-+....|+.+.|...+.++...-.....+--.=-..+-..|+.++|
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A  105 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA  105 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence            46677777777765   334 5666554 556666667788888898888888766422111111111123447888999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC
Q 002761          193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG  272 (883)
Q Consensus       193 ~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g  272 (883)
                      .++++.+.+.. +-|.++|--=+...-..|+--+|.+-+....+. +..|.-.|--|-..|...|+++.|.-.+++|.- 
T Consensus       106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll-  182 (289)
T KOG3060|consen  106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL-  182 (289)
T ss_pred             HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-
Confidence            99999988876 455678877777777778777888877777765 566888999999999999999999999988762 


Q ss_pred             CCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 002761          273 EDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVE  311 (883)
Q Consensus       273 ~~gi~p-d~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~  311 (883)
                         +.| +...|-.+-..+.-.|..+..+-+.++|.+-++
T Consensus       183 ---~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk  219 (289)
T KOG3060|consen  183 ---IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK  219 (289)
T ss_pred             ---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence               234 444555666666666655567778888888776

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.61  E-value=0.087  Score=60.19  Aligned_cols=122  Identities=11%  Similarity=0.053  Sum_probs=98.1

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 002761          178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG  257 (883)
Q Consensus       178 ~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G  257 (883)
                      +|+..+...++++.|..+|+++.+..  |++  ...|+..+...++-.+|.+++.+..... +-+....+.....|.+.+
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence            44555566889999999999998865  554  3457888888889999999999888653 336667777778888999


Q ss_pred             CHHHHHHHHHHchhCCCCCCCCH-HHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 002761          258 IPEVAFATFENMEYGEDYMKPDT-ETYNCVIQAYTRAESYDRVQDVAELLGMMVE  311 (883)
Q Consensus       258 ~~e~A~~lf~~M~~g~~gi~pd~-~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~  311 (883)
                      +.+.|..+.+++.+    +.|+. .+|..|..+|.+.|   +.+.|+-.++.+..
T Consensus       249 ~~~lAL~iAk~av~----lsP~~f~~W~~La~~Yi~~~---d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  249 KYELALEIAKKAVE----LSPSEFETWYQLAECYIQLG---DFENALLALNSCPM  296 (395)
T ss_pred             CHHHHHHHHHHHHH----hCchhHHHHHHHHHHHHhcC---CHHHHHHHHhcCcC
Confidence            99999999999873    45655 59999999999999   66699999999886

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.61  E-value=1  Score=55.36  Aligned_cols=160  Identities=14%  Similarity=0.029  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 002761          104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEEL  183 (883)
Q Consensus       104 ~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y  183 (883)
                      +..|+.+-.+-.+.|.+.+|++-|-+.      -|+..|.-+++.+.+.|.+++-...+...++..-.|.+ =+.||-+|
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i-d~eLi~Ay 1176 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI-DSELIFAY 1176 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc-hHHHHHHH
Confidence            356778888878888888887766431      26778888999999999998888888777776655543 35788899


Q ss_pred             HHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002761          184 VRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF  263 (883)
Q Consensus       184 ~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~  263 (883)
                      ++.+++.+-..+..       -||......+-+-|...|.++.|.-+|.         ++.-|.-|-..+...|.+..|.
T Consensus      1177 Akt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred             HHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHH
Confidence            99888887766553       2777777777777888888888877776         4455667777777777777766


Q ss_pred             HHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 002761          264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAE  294 (883)
Q Consensus       264 ~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G  294 (883)
                      .--++..        +..||.-+-.+|...+
T Consensus      1241 D~aRKAn--------s~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1241 DAARKAN--------STKTWKEVCFACVDKE 1263 (1666)
T ss_pred             HHhhhcc--------chhHHHHHHHHHhchh
Confidence            5544333        5556666655555554

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.60  E-value=0.4  Score=53.43  Aligned_cols=111  Identities=15%  Similarity=0.138  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHH
Q 002761          244 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY  323 (883)
Q Consensus       244 ~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty  323 (883)
                      .+.+..|.-+...|....|.++-.+.+      .||..-|-..|.+|+..+   ++++..++...        +-..+-|
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk------v~dkrfw~lki~aLa~~~---~w~eL~~fa~s--------kKsPIGy  240 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEFK------VPDKRFWWLKIKALAENK---DWDELEKFAKS--------KKSPIGY  240 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHcC------CcHHHHHHHHHHHHHhcC---CHHHHHHHHhC--------CCCCCCh
Confidence            455666777888999999999999998      899999999999999999   45454443221        1234789


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002761          324 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM  389 (883)
Q Consensus       324 ~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M  389 (883)
                      -.++.+|.+.|...+|..+...+                  ++..-+..|.++|.+.+|.+.--+.
T Consensus       241 epFv~~~~~~~~~~eA~~yI~k~------------------~~~~rv~~y~~~~~~~~A~~~A~~~  288 (319)
T PF04840_consen  241 EPFVEACLKYGNKKEASKYIPKI------------------PDEERVEMYLKCGDYKEAAQEAFKE  288 (319)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhC------------------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence            99999999999999999998774                  2467899999999999998876555

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.60  E-value=0.16  Score=53.98  Aligned_cols=118  Identities=14%  Similarity=0.098  Sum_probs=59.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHH----HHCC
Q 002761          112 VAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEEL----VRNK  187 (883)
Q Consensus       112 ~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y----~k~G  187 (883)
                      ..|+..|++++|++.....  .    +......=+..+.+..+.+.|.+.++.|.+..  -+.|.+-|-.++    ...+
T Consensus       116 ~i~~~~~~~deAl~~~~~~--~----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv~la~gge  187 (299)
T KOG3081|consen  116 IIYMHDGDFDEALKALHLG--E----NLEAAALNVQILLKMHRFDLAEKELKKMQQID--EDATLTQLAQAWVKLATGGE  187 (299)
T ss_pred             HHhhcCCChHHHHHHHhcc--c----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhccch
Confidence            3455566666666655441  1    22222222333444555666666666665432  222333333322    2344


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761          188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG  238 (883)
Q Consensus       188 ~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G  238 (883)
                      .+.+|+-+|++|-++ ..|+.-+.|-+..++...|++++|..++++...+.
T Consensus       188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd  237 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD  237 (299)
T ss_pred             hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence            566666666666442 34566666666666666666666666666665543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.48  E-value=0.094  Score=51.23  Aligned_cols=114  Identities=12%  Similarity=-0.009  Sum_probs=54.2

Q ss_pred             cCCHHHHHHHHHHHHHcCCChhH---HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHH
Q 002761          152 KGLATKGLEILAAMEKINYDIRQ---AWLILVEELVRNKYLEDANKVFLRGAKGGLRATD--EIYDLMIAEDCKAGDHSN  226 (883)
Q Consensus       152 ~g~~~~A~~l~~~m~~~g~~pdv---tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~--~tyn~LI~a~~k~g~~ee  226 (883)
                      .++...+...++.+.+......-   ..-.+-..+...|++++|...|+........|+.  ...-.|...+...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            45555555555555554322111   2222334555556666666666665554311211  233334455555666666


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002761          227 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE  267 (883)
Q Consensus       227 A~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~  267 (883)
                      |+..++......+  ....+..+-+.|.+.|+.++|...|+
T Consensus       104 Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~  142 (145)
T PF09976_consen  104 ALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQ  142 (145)
T ss_pred             HHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            6666544322221  22334445555666666666666554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.48  E-value=0.1  Score=49.76  Aligned_cols=93  Identities=16%  Similarity=0.073  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 002761          176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT  255 (883)
Q Consensus       176 yn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k  255 (883)
                      ...+...|.+.|++++|...|+.....+ +.+...|..+-..+.+.|++++|...|+.....+ +.+..++..+-..|..
T Consensus        20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence            3344444555555555555555544422 1233444455555555555555555555544432 2233444444445555


Q ss_pred             cCCHHHHHHHHHHch
Q 002761          256 CGIPEVAFATFENME  270 (883)
Q Consensus       256 ~G~~e~A~~lf~~M~  270 (883)
                      .|+.+.|...|+...
T Consensus        98 ~g~~~~A~~~~~~al  112 (135)
T TIGR02552        98 LGEPESALKALDLAI  112 (135)
T ss_pred             cCCHHHHHHHHHHHH
Confidence            555555555555444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.47  E-value=0.19  Score=58.47  Aligned_cols=256  Identities=16%  Similarity=0.108  Sum_probs=169.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHH
Q 002761          114 YTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDAN  193 (883)
Q Consensus       114 ~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~  193 (883)
                      +.++|.+.+|.-.|+........ +...|-.|-...+..++-..|...+.+..+.....-.+.-+|--.|...|.-..|+
T Consensus       295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al  373 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL  373 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence            35678888888888877665321 45567777777777777778888888777754322226677777888899988999


Q ss_pred             HHHHHHHhCCCC-----C---CHHHHHHHHHHHHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002761          194 KVFLRGAKGGLR-----A---TDEIYDLMIAEDCKAGDHSNALEIAYEME-AAGRMATTFHFNHLLSCQATCGIPEVAFA  264 (883)
Q Consensus       194 ~lf~~M~~~gi~-----p---d~~tyn~LI~a~~k~g~~eeA~~lf~~M~-~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~  264 (883)
                      +.|+.-.....+     +   +...=++  ..+.....+....++|-++. ..+..+|.-+++.|--.|--.|.++.|..
T Consensus       374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD  451 (579)
T KOG1125|consen  374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD  451 (579)
T ss_pred             HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence            988876542210     0   0000000  12222333455566666654 55656778888888888999999999999


Q ss_pred             HHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH--HHHHHHHHHHHcCCHHHHHH
Q 002761          265 TFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK--TYALLVECFTKYCAVTEAIR  341 (883)
Q Consensus       265 lf~~M~~g~~gi~p-d~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~--Ty~~LI~a~~k~G~~eeA~~  341 (883)
                      .|+...+    +.| |...||-|-..++...   +-++|+.-|++.++    ++|+-+  -||. --+|...|.+++|..
T Consensus       452 cf~~AL~----v~Pnd~~lWNRLGAtLAN~~---~s~EAIsAY~rALq----LqP~yVR~RyNl-gIS~mNlG~ykEA~~  519 (579)
T KOG1125|consen  452 CFEAALQ----VKPNDYLLWNRLGATLANGN---RSEEAISAYNRALQ----LQPGYVRVRYNL-GISCMNLGAYKEAVK  519 (579)
T ss_pred             HHHHHHh----cCCchHHHHHHhhHHhcCCc---ccHHHHHHHHHHHh----cCCCeeeeehhh-hhhhhhhhhHHHHHH
Confidence            9998773    244 6788999999999988   77799999999986    888843  3444 446889999999999


Q ss_pred             HHHHHHhCCCCCccccccCC--CCcHHHHHHHHHHHcCCHHHHHHH
Q 002761          342 HFRALQNYEGGTKVLHNEGN--FGDPLSLYLRALCREGRIIELLEA  385 (883)
Q Consensus       342 lf~~M~~~~~~~~~~~~~~~--~~dtYn~LI~~y~~~G~~~eA~~l  385 (883)
                      +|-.......... .++..+  ....|.+|=.++.-.++.+-+.+.
T Consensus       520 hlL~AL~mq~ks~-~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  520 HLLEALSMQRKSR-NHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             HHHHHHHhhhccc-ccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            8876653211100 001111  122677776666666666544433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.47  E-value=0.32  Score=60.71  Aligned_cols=220  Identities=10%  Similarity=0.033  Sum_probs=121.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 002761          103 GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL-IALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVE  181 (883)
Q Consensus       103 d~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty-~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~  181 (883)
                      +...|-.||..|...+++++|.++.+.-..  ..|+...+ -.+-..+.+.++...+..+                .++.
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~   91 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL----------------NLID   91 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh----------------hhhh
Confidence            456788888888888888888888875444  35554432 2222245555554444433                2222


Q ss_pred             HHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 002761          182 ELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV  261 (883)
Q Consensus       182 ~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~  261 (883)
                      ......++.-+..+...|...+  -+...+-++..+|-+.|+.++|..+++++.+.. .-|..+.|-+-..|+.. ++++
T Consensus        92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K  167 (906)
T PRK14720         92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK  167 (906)
T ss_pred             hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence            2222222322222223333311  223455666666767777777777777776665 33566666666666666 6777


Q ss_pred             HHHHHHHchhCCCCCCCCHHHHHHH---HHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHH
Q 002761          262 AFATFENMEYGEDYMKPDTETYNCV---IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE  338 (883)
Q Consensus       262 A~~lf~~M~~g~~gi~pd~~tyn~L---I~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~ee  338 (883)
                      |.+++.+...  ..  -|..-|+.+   ...||... +++++.-+++.+.+... .|..--+.++--|-..|-...++++
T Consensus       168 A~~m~~KAV~--~~--i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~-~~~~~~~~~~~~l~~~y~~~~~~~~  241 (906)
T PRK14720        168 AITYLKKAIY--RF--IKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGH-REFTRLVGLLEDLYEPYKALEDWDE  241 (906)
T ss_pred             HHHHHHHHHH--HH--HhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhh-hccchhHHHHHHHHHHHhhhhhhhH
Confidence            7666665541  10  011112221   22233332 22344555555555542 3555556666777788888888889


Q ss_pred             HHHHHHHHHhCC
Q 002761          339 AIRHFRALQNYE  350 (883)
Q Consensus       339 A~~lf~~M~~~~  350 (883)
                      +..+|+.+.+..
T Consensus       242 ~i~iLK~iL~~~  253 (906)
T PRK14720        242 VIYILKKILEHD  253 (906)
T ss_pred             HHHHHHHHHhcC
Confidence            999988887644

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.40  E-value=2.8  Score=48.73  Aligned_cols=153  Identities=9%  Similarity=0.063  Sum_probs=116.5

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHH
Q 002761          224 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDV  302 (883)
Q Consensus       224 ~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~p-d~~tyn~LI~ay~~~G~~d~~~eA  302 (883)
                      .+.....+.++...-..--..+|..+|+.--+..-+..|..+|.+..  +.+..+ +++.++++|.-||...    -.-|
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR--~~~r~~hhVfVa~A~mEy~cskD----~~~A  420 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAR--EDKRTRHHVFVAAALMEYYCSKD----KETA  420 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHh--hccCCcchhhHHHHHHHHHhcCC----hhHH
Confidence            44455555555543333234578888999999999999999999999  666666 8999999999999875    3579


Q ss_pred             HHHHHHhHhccCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHH
Q 002761          303 AELLGMMVEDHKRLQPNVKTY-ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE  381 (883)
Q Consensus       303 l~lf~~M~~~~~gi~Pd~~Ty-~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~e  381 (883)
                      +++|.-=.+    --+|.-.| ...++-+.+.++=..|..+|+........+.      +....|..+|+-=..-|++..
T Consensus       421 frIFeLGLk----kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~------ks~~Iw~r~l~yES~vGdL~s  490 (656)
T KOG1914|consen  421 FRIFELGLK----KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD------KSKEIWDRMLEYESNVGDLNS  490 (656)
T ss_pred             HHHHHHHHH----hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh------hhHHHHHHHHHHHHhcccHHH
Confidence            999987655    23455444 6778889999999999999999987633322      123379999999999999999


Q ss_pred             HHHHHHHHhhC
Q 002761          382 LLEALEAMAKD  392 (883)
Q Consensus       382 A~~lf~~M~~~  392 (883)
                      ++++-+++...
T Consensus       491 i~~lekR~~~a  501 (656)
T KOG1914|consen  491 ILKLEKRRFTA  501 (656)
T ss_pred             HHHHHHHHHHh
Confidence            99999888543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.37  E-value=0.15  Score=49.83  Aligned_cols=124  Identities=15%  Similarity=0.017  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH---HHHHH
Q 002761          106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE---TLIALARLFGSKGLATKGLEILAAMEKINYDIRQ---AWLIL  179 (883)
Q Consensus       106 tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~---ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv---tyn~L  179 (883)
                      .|..++..+ ..++...+...++.+.... +.+.+   ..-.+-..+...|++++|...|.........+..   ..-.|
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            344444444 3677777777777776642 11212   2223446667778888888888888776644432   33455


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002761          180 VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE  233 (883)
Q Consensus       180 I~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~  233 (883)
                      ...+...|++++|...++......  .....+...-..|.+.|+.++|...|+.
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            667777888888888886643322  2334555666777888888888887764

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.37  E-value=1.1  Score=56.10  Aligned_cols=234  Identities=10%  Similarity=0.037  Sum_probs=118.6

Q ss_pred             CCCHHHHHHHHHHHHhCCChhhHHHHHHcC--CCCChhHHHHHHHHH-HccCChHH---HHHHHHHHhcCChHHHHHHHH
Q 002761           20 QTGVVPIRSAMSSPEKKTRRKKQQRRQQKH--GDSLLSTNGSVVSAA-EQGLRLIF---MEELMQHARNRDAPRVNDVIY   93 (883)
Q Consensus        20 ~pd~~syn~LI~~~~k~g~~~~A~~M~~~g--v~Pd~~ty~~ll~a~-~~~~~~~~---~~~L~~~~k~G~~~~A~~lf~   93 (883)
                      +.+...|-.||..|...+++++|.++.+.+  ..|+...+-.+...+ ...+...-   ...+-......++.-+..+..
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~  107 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICD  107 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHH
Confidence            678889999999999999999997776653  345554433322221 11111111   111111222333333344444


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChh
Q 002761           94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR  173 (883)
Q Consensus        94 ~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pd  173 (883)
                      .|...+  -+...+-.|..+|-+.|+.++|..+++++.+.. .-|..+.|.+--.|+.. ++++|.+++.+.+..     
T Consensus       108 ~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-----  178 (906)
T PRK14720        108 KILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-----  178 (906)
T ss_pred             HHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence            444322  223344555555555555555555555555544 22444555555555555 555555555444432     


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 002761          174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA-GRMATTFHFNHLLSC  252 (883)
Q Consensus       174 vtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~-G~~Pd~~tyn~LI~~  252 (883)
                               |...+++..+..++.++....  |+.               ++.-..+.+.+... |..--+.++-.|-..
T Consensus       179 ---------~i~~kq~~~~~e~W~k~~~~~--~~d---------------~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~  232 (906)
T PRK14720        179 ---------FIKKKQYVGIEEIWSKLVHYN--SDD---------------FDFFLRIERKVLGHREFTRLVGLLEDLYEP  232 (906)
T ss_pred             ---------HHhhhcchHHHHHHHHHHhcC--ccc---------------chHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence                     333444444444444444311  111               12222222222221 222334455566677


Q ss_pred             HHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHH
Q 002761          253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT  291 (883)
Q Consensus       253 y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~  291 (883)
                      |-+..+++++..+|..+..   --+.|.....-++..|.
T Consensus       233 y~~~~~~~~~i~iLK~iL~---~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        233 YKALEDWDEVIYILKKILE---HDNKNNKAREELIRFYK  268 (906)
T ss_pred             HhhhhhhhHHHHHHHHHHh---cCCcchhhHHHHHHHHH
Confidence            7777788888888887762   11335555666666665

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=96.37  E-value=0.8  Score=52.57  Aligned_cols=216  Identities=11%  Similarity=-0.007  Sum_probs=113.0

Q ss_pred             HHhcCC-hHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhc
Q 002761           79 HARNRD-APRVNDVIYDMI---AAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAG--VRPLHETLIALARLFGSK  152 (883)
Q Consensus        79 ~~k~G~-~~~A~~lf~~M~---~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~G--i~Pd~~ty~~LI~a~~~~  152 (883)
                      +.+.|. .....+.|+++.   ..|-.|....-+.=    .-..++.++...-+.|...+  -.|+...+...+.+....
T Consensus       212 L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THP----lp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~  287 (484)
T COG4783         212 LVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHP----LPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEA  287 (484)
T ss_pred             HHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCC----CchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhcc
Confidence            444443 344556666666   33333333222111    11234445554445554322  234555555555554443


Q ss_pred             CCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHH
Q 002761          153 GLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIA  231 (883)
Q Consensus       153 g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~lf  231 (883)
                      ..-..+..++..-.+.+ .+..-|..-+ .+...|.+++|+..++.+...  .|+. .-+......+.+.++..+|.+.+
T Consensus       288 ~~~~~~~~~~~~~~~~~-~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~  363 (484)
T COG4783         288 LPNQQAADLLAKRSKRG-GLAAQYGRAL-QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERL  363 (484)
T ss_pred             ccccchHHHHHHHhCcc-chHHHHHHHH-HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence            33333333333322211 1111333333 344567777777777776653  2444 44445556677777777777777


Q ss_pred             HHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 002761          232 YEMEAAGRMAT-TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV  310 (883)
Q Consensus       232 ~~M~~~G~~Pd-~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~  310 (883)
                      +.+...  .|+ ....-.+-.+|.+.|+..+|.++++...   ...+-|...|..|-.+|...|+   ..++..-..++.
T Consensus       364 ~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~---~~~p~dp~~w~~LAqay~~~g~---~~~a~~A~AE~~  435 (484)
T COG4783         364 KKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYL---FNDPEDPNGWDLLAQAYAELGN---RAEALLARAEGY  435 (484)
T ss_pred             HHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHh---hcCCCCchHHHHHHHHHHHhCc---hHHHHHHHHHHH
Confidence            777664  344 4455556677777777777777777665   2335566777777777777773   334444444443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.35  E-value=1.1  Score=47.83  Aligned_cols=251  Identities=13%  Similarity=0.040  Sum_probs=144.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHH
Q 002761          113 AYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLED  191 (883)
Q Consensus       113 a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~ee  191 (883)
                      -|.-.|.+..++..-......  +-+...-.-+-++|...|.....   ...+.... .|.. ..-.+-..+..-++.++
T Consensus        17 n~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~---~~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~   90 (299)
T KOG3081|consen   17 NYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIV---ISEIKEGK-ATPLQAVRLLAEYLELESNKKS   90 (299)
T ss_pred             HHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccc---cccccccc-CChHHHHHHHHHHhhCcchhHH
Confidence            333445665555543332221  13344444555666666654322   22222222 2222 22222222222333332


Q ss_pred             -HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761          192 -ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME  270 (883)
Q Consensus       192 -A~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~  270 (883)
                       -..+.+.+......-+.+.-..-...|+..|++++|++......      +.-....=+..+.|..+++.|.+.++.|.
T Consensus        91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq  164 (299)
T KOG3081|consen   91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ  164 (299)
T ss_pred             HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             33445555544333333333333455888999999998877521      22233333445567788999999999999


Q ss_pred             hCCCCCCCCHHHHHHHHHHHHHcC-CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002761          271 YGEDYMKPDTETYNCVIQAYTRAE-SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY  349 (883)
Q Consensus       271 ~g~~gi~pd~~tyn~LI~ay~~~G-~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~  349 (883)
                      +     --+..|.+-|..+|.+.- .-+++.+|+-+|++|-+   ...|+..+.+....++...|++++|..+++....+
T Consensus       165 ~-----ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k  236 (299)
T KOG3081|consen  165 Q-----IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK  236 (299)
T ss_pred             c-----cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            4     456677777777766531 11268899999999965   58999999999999999999999999999998754


Q ss_pred             CCCCccccccCCCCcHHHHHHHHHHHcCCHH-HHHHHHHHHhhC
Q 002761          350 EGGTKVLHNEGNFGDPLSLYLRALCREGRII-ELLEALEAMAKD  392 (883)
Q Consensus       350 ~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~-eA~~lf~~M~~~  392 (883)
                      ..         +.+++...+|..-...|... --.+.+.+++..
T Consensus       237 d~---------~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~  271 (299)
T KOG3081|consen  237 DA---------KDPETLANLIVLALHLGKDAEVTERNLSQLKLS  271 (299)
T ss_pred             cC---------CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence            32         12233444555445555543 344555555444

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=96.32  E-value=0.1  Score=51.11  Aligned_cols=92  Identities=11%  Similarity=-0.145  Sum_probs=50.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 002761          144 ALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGD  223 (883)
Q Consensus       144 ~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~  223 (883)
                      .+-.++...|++++|...|............+|..+-.++.+.|++++|...|+...... +.+..++..+-.++.+.|+
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~  107 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE  107 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence            344455556666666666666555443322255556666666666666666666655422 1233555555555666666


Q ss_pred             hHHHHHHHHHHHH
Q 002761          224 HSNALEIAYEMEA  236 (883)
Q Consensus       224 ~eeA~~lf~~M~~  236 (883)
                      +++|...|+....
T Consensus       108 ~~eAi~~~~~Al~  120 (144)
T PRK15359        108 PGLAREAFQTAIK  120 (144)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666655554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.29  E-value=0.063  Score=45.55  Aligned_cols=89  Identities=18%  Similarity=0.150  Sum_probs=37.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCH
Q 002761          110 LVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYL  189 (883)
Q Consensus       110 LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~  189 (883)
                      +...+...|++++|..+|.+..... +.+...+..+...+...++++.|...+....+.......++..+...+...|+.
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY   84 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence            3334444455555555554443321 112233334444444444444444444444443322112344444444444444


Q ss_pred             HHHHHHHHHH
Q 002761          190 EDANKVFLRG  199 (883)
Q Consensus       190 eeA~~lf~~M  199 (883)
                      +.|...|...
T Consensus        85 ~~a~~~~~~~   94 (100)
T cd00189          85 EEALEAYEKA   94 (100)
T ss_pred             HHHHHHHHHH
Confidence            4444444443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.23  E-value=0.57  Score=54.61  Aligned_cols=253  Identities=14%  Similarity=0.149  Sum_probs=162.3

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 002761           78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL-HETLIALARLFGSKGLAT  156 (883)
Q Consensus        78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd-~~ty~~LI~a~~~~g~~~  156 (883)
                      .+.+.|++..|.-.|+.-.... +-+...|--|-...+.+++-..|+..+++-.+  +.|+ ....-.|--.|...|.-.
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~  370 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQN  370 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHH
Confidence            5788999999999999988765 34677888888888888888888888887665  4554 455667777778888888


Q ss_pred             HHHHHHHHHHHcCCChhHHHHHH--H-------HHHHHCCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCChHH
Q 002761          157 KGLEILAAMEKINYDIRQAWLIL--V-------EELVRNKYLEDANKVFLRGAK-GGLRATDEIYDLMIAEDCKAGDHSN  226 (883)
Q Consensus       157 ~A~~l~~~m~~~g~~pdvtyn~L--I-------~~y~k~G~~eeA~~lf~~M~~-~gi~pd~~tyn~LI~a~~k~g~~ee  226 (883)
                      .|...++.-++..++--  |..-  .       ..+.....+....++|-++.. .+..+|...++.|---|--.|.+++
T Consensus       371 ~Al~~L~~Wi~~~p~y~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPKYV--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHhCccch--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            88888877765432110  0000  0       111122224445556655543 3433555556666666677788888


Q ss_pred             HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHH-HHHHHHHHHHHcCCcccHHHHHH
Q 002761          227 ALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE-TYNCVIQAYTRAESYDRVQDVAE  304 (883)
Q Consensus       227 A~~lf~~M~~~G~~P-d~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~-tyn~LI~ay~~~G~~d~~~eAl~  304 (883)
                      |...|+.....  +| |..+||-|-..++...+.++|..-|.+..+    ++|+-+ ++--|--.|...|.|+   +|.+
T Consensus       449 aiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq----LqP~yVR~RyNlgIS~mNlG~yk---EA~~  519 (579)
T KOG1125|consen  449 AVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ----LQPGYVRVRYNLGISCMNLGAYK---EAVK  519 (579)
T ss_pred             HHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh----cCCCeeeeehhhhhhhhhhhhHH---HHHH
Confidence            88888877764  33 567788888888888888888888877663    455432 2223444566777443   6665


Q ss_pred             HHHHhH----h---ccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002761          305 LLGMMV----E---DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR  344 (883)
Q Consensus       305 lf~~M~----~---~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~  344 (883)
                      .|-..+    +   ...+..++...|.+|=.++.-.++.|.+.+...
T Consensus       520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~  566 (579)
T KOG1125|consen  520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP  566 (579)
T ss_pred             HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence            554422    0   003555677777777777777777776665553

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.17  E-value=0.075  Score=45.04  Aligned_cols=89  Identities=16%  Similarity=0.076  Sum_probs=39.3

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 002761          179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI  258 (883)
Q Consensus       179 LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~  258 (883)
                      +...|...|++++|..+|.+..+.. +.+...+..+...+...+++++|.+.|........ .+..++..+...+...|+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHh
Confidence            3344444445555555554444321 11123444444444444555555555544444321 122344444445555555


Q ss_pred             HHHHHHHHHHc
Q 002761          259 PEVAFATFENM  269 (883)
Q Consensus       259 ~e~A~~lf~~M  269 (883)
                      .+.|...|...
T Consensus        84 ~~~a~~~~~~~   94 (100)
T cd00189          84 YEEALEAYEKA   94 (100)
T ss_pred             HHHHHHHHHHH
Confidence            55555555443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.12  E-value=1.8  Score=52.90  Aligned_cols=221  Identities=13%  Similarity=0.037  Sum_probs=123.9

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHH--HHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 002761          151 SKGLATKGLEILAAMEKINYDIRQAWLILVEEL--VRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNAL  228 (883)
Q Consensus       151 ~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y--~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~  228 (883)
                      ..+++..|.+..+.+.+.  -|+..|...+.+|  .|.|+.++|..+++.....+.. |..|..++-..|...++.++|.
T Consensus        21 d~~qfkkal~~~~kllkk--~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKK--HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             hhHHHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence            344555666666555544  2333444444433  3566666666666665544332 5566666666677777777777


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC-cc------
Q 002761          229 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV----AFATFENMEYGEDYMKPDTETYNCVIQAYTRAES-YD------  297 (883)
Q Consensus       229 ~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~----A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~-~d------  297 (883)
                      .+|+.....  -|+......+..+|.+-+.+.+    |.+++...       +.+.+.+=++|+-+.+.-. .+      
T Consensus        98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~-------pk~~yyfWsV~Slilqs~~~~~~~~~~i  168 (932)
T KOG2053|consen   98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF-------PKRAYYFWSVISLILQSIFSENELLDPI  168 (932)
T ss_pred             HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CcccchHHHHHHHHHHhccCCcccccch
Confidence            777666543  3555555666666666666544    33344322       3344444455555544321 11      


Q ss_pred             cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhCCC-CCccccccCCCCcHHHHHHHHHHH
Q 002761          298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRA-LQNYEG-GTKVLHNEGNFGDPLSLYLRALCR  375 (883)
Q Consensus       298 ~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~-M~~~~~-~~~~~~~~~~~~dtYn~LI~~y~~  375 (883)
                      ...-|.+.++.+.++ .|-.-+..-.-.-+..+...|.+++|..++.. ..+.-. .+..         .-|--++.+..
T Consensus       169 ~l~LA~~m~~~~l~~-~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~---------l~~~~~dllk~  238 (932)
T KOG2053|consen  169 LLALAEKMVQKLLEK-KGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLY---------LENKKLDLLKL  238 (932)
T ss_pred             hHHHHHHHHHHHhcc-CCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchH---------HHHHHHHHHHH
Confidence            112355566777764 34222233333334556778999999999833 322211 1110         12345777888


Q ss_pred             cCCHHHHHHHHHHHhhCC
Q 002761          376 EGRIIELLEALEAMAKDN  393 (883)
Q Consensus       376 ~G~~~eA~~lf~~M~~~G  393 (883)
                      .+++.+-.++-.++...|
T Consensus       239 l~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  239 LNRWQELFELSSRLLEKG  256 (932)
T ss_pred             hcChHHHHHHHHHHHHhC
Confidence            899999999988888888

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.93  E-value=0.1  Score=57.20  Aligned_cols=25  Identities=8%  Similarity=0.081  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc
Q 002761          245 HFNHLLSCQATCGIPEVAFATFENM  269 (883)
Q Consensus       245 tyn~LI~~y~k~G~~e~A~~lf~~M  269 (883)
                      .|...|..=.+.|+++.+..|..++
T Consensus       109 iw~~~i~fE~~~Gdl~~v~~v~~R~  133 (280)
T PF05843_consen  109 IWKKFIEFESKYGDLESVRKVEKRA  133 (280)
T ss_dssp             HHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444444444444444444444333

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.76  E-value=0.21  Score=54.63  Aligned_cols=144  Identities=15%  Similarity=0.148  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHH
Q 002761          105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAG-VRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEE  182 (883)
Q Consensus       105 ~tyn~LI~a~~~~g~~~~A~~lf~~M~~~G-i~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~  182 (883)
                      .+|-.+|...-+.+..+.|..+|.+.+..+ +....+...++|.-+ ..++.+.|..||+...+. +..+. .|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            578889999999999999999999998654 344555555555443 346777799999998876 34445 88899999


Q ss_pred             HHHCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002761          183 LVRNKYLEDANKVFLRGAKGGLRATD---EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ  253 (883)
Q Consensus       183 y~k~G~~eeA~~lf~~M~~~gi~pd~---~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y  253 (883)
                      +.+.++.+.|..+|++.... +.++.   ..|...|.-=.+.|+++.+.++...+.+.  .|+......+++-|
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry  150 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY  150 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence            99999999999999998765 33322   59999999999999999999999998875  34433333344433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=95.60  E-value=4.8  Score=44.49  Aligned_cols=162  Identities=14%  Similarity=0.083  Sum_probs=92.5

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 002761          215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE  294 (883)
Q Consensus       215 I~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G  294 (883)
                      +..+.-.|+...|......+.+-. +-|...|-.--.+|...|.+..|..=+....+  - -.-|+.++--+-.-+...|
T Consensus       162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask--L-s~DnTe~~ykis~L~Y~vg  237 (504)
T KOG0624|consen  162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASK--L-SQDNTEGHYKISQLLYTVG  237 (504)
T ss_pred             HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHh--c-cccchHHHHHHHHHHHhhh
Confidence            344555677777777777777653 22666677777777888888777655554431  1 1334555555666667777


Q ss_pred             CcccHHHHHHHHHHhHhccCCCCCCHHHHHHH-----------H--HHHHHcCCHHHHHHHHHHHHhCCCC-CccccccC
Q 002761          295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALL-----------V--ECFTKYCAVTEAIRHFRALQNYEGG-TKVLHNEG  360 (883)
Q Consensus       295 ~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~L-----------I--~a~~k~G~~eeA~~lf~~M~~~~~~-~~~~~~~~  360 (883)
                         .++.++...++-++    +.||....-..           -  ......+.+-++..-.+...+.... +.+..+  
T Consensus       238 ---d~~~sL~~iRECLK----ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~--  308 (504)
T KOG0624|consen  238 ---DAENSLKEIRECLK----LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYN--  308 (504)
T ss_pred             ---hHHHHHHHHHHHHc----cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeee--
Confidence               55576666666654    56765432111           0  1223345555555555555544332 222111  


Q ss_pred             CCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761          361 NFGDPLSLYLRALCREGRIIELLEALEAMAKDN  393 (883)
Q Consensus       361 ~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~G  393 (883)
                          .+..+-..|...|++.+|++...+.++-.
T Consensus       309 ----~~r~~c~C~~~d~~~~eAiqqC~evL~~d  337 (504)
T KOG0624|consen  309 ----GFRVLCTCYREDEQFGEAIQQCKEVLDID  337 (504)
T ss_pred             ----eeheeeecccccCCHHHHHHHHHHHHhcC
Confidence                23345556667788888888777776543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=95.46  E-value=0.5  Score=47.51  Aligned_cols=91  Identities=13%  Similarity=0.095  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 002761          104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL--HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVE  181 (883)
Q Consensus       104 ~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd--~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~  181 (883)
                      ...|..+...|...|++++|+..|++.......+.  ...+..+...+.+.|+++.|...+.+..+........+..+..
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            44677777778888889999888888776543332  3567777888888888888888888887754332226666777


Q ss_pred             HHHHCCCHHHHHH
Q 002761          182 ELVRNKYLEDANK  194 (883)
Q Consensus       182 ~y~k~G~~eeA~~  194 (883)
                      .|...|+...+..
T Consensus       115 ~~~~~g~~~~a~~  127 (172)
T PRK02603        115 IYHKRGEKAEEAG  127 (172)
T ss_pred             HHHHcCChHhHhh
Confidence            7777776544443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.42  E-value=8.3  Score=47.54  Aligned_cols=187  Identities=14%  Similarity=0.063  Sum_probs=127.3

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG  158 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A  158 (883)
                      +.|.|+.++|..+++.....+.. |..|..++-..|-..++.++|..+|++...  .-|+..-...+..+|.|.+.+.+-
T Consensus        53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~q  129 (932)
T KOG2053|consen   53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQ  129 (932)
T ss_pred             HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHH
Confidence            55889999999999988876644 889999999999999999999999998765  468888888999999999887654


Q ss_pred             HHHHHHHHHcCCChhH--HHHHHHHHHHHCC----------CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChH
Q 002761          159 LEILAAMEKINYDIRQ--AWLILVEELVRNK----------YLEDANKVFLRGAKGGLRA-TDEIYDLMIAEDCKAGDHS  225 (883)
Q Consensus       159 ~~l~~~m~~~g~~pdv--tyn~LI~~y~k~G----------~~eeA~~lf~~M~~~gi~p-d~~tyn~LI~a~~k~g~~e  225 (883)
                      .++=-+|-+. ++-+.  -|+ +|+.+.+.-          -+.-|.+.++.+.+.+=+- +..-.-.-...+-..|+++
T Consensus       130 Qkaa~~LyK~-~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~  207 (932)
T KOG2053|consen  130 QKAALQLYKN-FPKRAYYFWS-VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQ  207 (932)
T ss_pred             HHHHHHHHHh-CCcccchHHH-HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHH
Confidence            4433333331 11111  333 333333311          1345777777777654111 1111222223345677899


Q ss_pred             HHHHHH-HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761          226 NALEIA-YEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME  270 (883)
Q Consensus       226 eA~~lf-~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~  270 (883)
                      +|.+++ ....+.-..-+...-|--++.+.+++++.+-.++-.++.
T Consensus       208 eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll  253 (932)
T KOG2053|consen  208 EALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL  253 (932)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            999999 445454445566677788899999999988877777666

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=95.41  E-value=0.39  Score=44.06  Aligned_cols=21  Identities=19%  Similarity=0.244  Sum_probs=8.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHH
Q 002761          111 VVAYTLNGDHEGAMHSLKREL  131 (883)
Q Consensus       111 I~a~~~~g~~~~A~~lf~~M~  131 (883)
                      ...+.+.|++++|...|..+.
T Consensus         9 ~~~~~~~~~~~~A~~~~~~~~   29 (119)
T TIGR02795         9 ALLVLKAGDYADAIQAFQAFL   29 (119)
T ss_pred             HHHHHHcCCHHHHHHHHHHHH
Confidence            333344444444444444443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=95.28  E-value=1.4  Score=51.04  Aligned_cols=181  Identities=11%  Similarity=0.001  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002761           86 PRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG---DHEGAMHSLKRELSAG-VRPLHETLIALARLFGSKGLATKGLEI  161 (883)
Q Consensus        86 ~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g---~~~~A~~lf~~M~~~G-i~Pd~~ty~~LI~a~~~~g~~~~A~~l  161 (883)
                      +++..+++.....-..-+..+|..+.+-=-..-   ..+.....++++...- +.|+ .+|..+|+..-+..-+..|+.+
T Consensus       310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~i  388 (656)
T KOG1914|consen  310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKI  388 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHH
Confidence            566666666554322234444444433211111   2555666666655432 3443 5788888888888889999999


Q ss_pred             HHHHHHcCCCh-hH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761          162 LAAMEKINYDI-RQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAAG  238 (883)
Q Consensus       162 ~~~m~~~g~~p-dv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G  238 (883)
                      |.+..+.+..+ .+ +++++|.-||. ++..-|.++|+--.+. . +|. .--+.-++-+...++-..|..+|+.....+
T Consensus       389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~  465 (656)
T KOG1914|consen  389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-F-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV  465 (656)
T ss_pred             HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-c-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence            99999888777 66 88899988884 6778899999764442 2 343 444567778888899999999999999887


Q ss_pred             CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761          239 RMAT--TFHFNHLLSCQATCGIPEVAFATFENME  270 (883)
Q Consensus       239 ~~Pd--~~tyn~LI~~y~k~G~~e~A~~lf~~M~  270 (883)
                      +.|+  ...|..+|+-=.+-|++..+.++-+++.
T Consensus       466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~  499 (656)
T KOG1914|consen  466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF  499 (656)
T ss_pred             CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            6665  4689999999999999999988877765

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=95.25  E-value=0.29  Score=55.45  Aligned_cols=85  Identities=13%  Similarity=0.073  Sum_probs=36.9

Q ss_pred             HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHH
Q 002761          116 LNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKV  195 (883)
Q Consensus       116 ~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~l  195 (883)
                      ..|++++|+.+|++.....- -+...|..+..+|.+.|++++|...++++++........|..+-.+|.+.|++++|...
T Consensus        14 ~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~   92 (356)
T PLN03088         14 VDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAA   92 (356)
T ss_pred             HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            34444444444444443211 12333444444444444444444444444443322111444444444444555555554


Q ss_pred             HHHHHh
Q 002761          196 FLRGAK  201 (883)
Q Consensus       196 f~~M~~  201 (883)
                      |++..+
T Consensus        93 ~~~al~   98 (356)
T PLN03088         93 LEKGAS   98 (356)
T ss_pred             HHHHHH
Confidence            444443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=95.22  E-value=4.6  Score=43.26  Aligned_cols=178  Identities=14%  Similarity=0.029  Sum_probs=93.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCChhHHH---HHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--c--
Q 002761          149 FGSKGLATKGLEILAAMEKINYDIRQAW---LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCK--A--  221 (883)
Q Consensus       149 ~~~~g~~~~A~~l~~~m~~~g~~pdvty---n~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k--~--  221 (883)
                      +.+.|+++.|...|+.+...-..+....   -.+..+|.+.+++++|...|++..+....-..+-|...+.|.+.  .  
T Consensus        42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~  121 (243)
T PRK10866         42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDD  121 (243)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcch
Confidence            3445666666666666666443332221   23445566667777777777666653211112334334444331  0  


Q ss_pred             -------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHH
Q 002761          222 -------------GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ  288 (883)
Q Consensus       222 -------------g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~  288 (883)
                                   .+...+.+-+            .++..+|.-|=...-..+|..-+..+..      .=...--.+..
T Consensus       122 ~~~~~~~~~~~~~rD~~~~~~A~------------~~~~~li~~yP~S~ya~~A~~rl~~l~~------~la~~e~~ia~  183 (243)
T PRK10866        122 SALQGFFGVDRSDRDPQHARAAF------------RDFSKLVRGYPNSQYTTDATKRLVFLKD------RLAKYELSVAE  183 (243)
T ss_pred             hhhhhccCCCccccCHHHHHHHH------------HHHHHHHHHCcCChhHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence                         0111111111            2334444445545555566555544441      11111113455


Q ss_pred             HHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002761          289 AYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ  347 (883)
Q Consensus       289 ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~  347 (883)
                      -|.+.|   ...-|+.-|+.+++...+..........++.+|.+.|..++|..+...+.
T Consensus       184 ~Y~~~~---~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        184 YYTKRG---AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHcC---chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            577777   55578888888887543444445556677788888888888888776554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=95.21  E-value=0.42  Score=43.82  Aligned_cols=98  Identities=10%  Similarity=-0.008  Sum_probs=38.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHH
Q 002761          248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV  327 (883)
Q Consensus       248 ~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI  327 (883)
                      .+...+.+.|++++|...|..+.....+-......+..+...+.+.|   +..+|+..|........+.......+..+.
T Consensus         7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG---KYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            33444444455555555554443100000001123333444455555   333555555544431000000122333334


Q ss_pred             HHHHHcCCHHHHHHHHHHHHh
Q 002761          328 ECFTKYCAVTEAIRHFRALQN  348 (883)
Q Consensus       328 ~a~~k~G~~eeA~~lf~~M~~  348 (883)
                      .++.+.|+.++|..+++.+.+
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIK  104 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHH
Confidence            444455555555555555544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.09  E-value=2.6  Score=46.11  Aligned_cols=134  Identities=14%  Similarity=0.099  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHC-CCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-----CC
Q 002761          175 AWLILVEELVRN-KYLEDANKVFLRGAK----GGLRAT--DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM-----AT  242 (883)
Q Consensus       175 tyn~LI~~y~k~-G~~eeA~~lf~~M~~----~gi~pd--~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~-----Pd  242 (883)
                      .+..+-..|-.. |+++.|...|.+-.+    .| .+.  ..++.-+...+.+.|++++|.++|++....-..     .+
T Consensus       116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~  194 (282)
T PF14938_consen  116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS  194 (282)
T ss_dssp             HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence            444555566666 777777777766532    22 111  145666777888899999999999888765432     22


Q ss_pred             HH-HHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCC--HHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 002761          243 TF-HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD--TETYNCVIQAYTRAESYDRVQDVAELLGMMV  310 (883)
Q Consensus       243 ~~-tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd--~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~  310 (883)
                      +. .|-..+-++...|++..|.+.|+.......++..+  ...-..||.+| ..|+.+...+++.-|+.+.
T Consensus       195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~~  264 (282)
T PF14938_consen  195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSIS  264 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTSS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcccC
Confidence            22 22233335666788999999998876312233332  23344455554 4556677778877777764

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=95.05  E-value=0.81  Score=45.97  Aligned_cols=82  Identities=13%  Similarity=-0.013  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002761          176 WLILVEELVRNKYLEDANKVFLRGAKGGLRAT--DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ  253 (883)
Q Consensus       176 yn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd--~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y  253 (883)
                      |..+...|.+.|++++|...|++.......+.  ...|..+...+.+.|++++|...+.+...... -+...+..+...|
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~  116 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAVIY  116 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence            34444444444555555555544443221111  13444444445555555555555544444311 1233333444444


Q ss_pred             HHcCC
Q 002761          254 ATCGI  258 (883)
Q Consensus       254 ~k~G~  258 (883)
                      ...|+
T Consensus       117 ~~~g~  121 (172)
T PRK02603        117 HKRGE  121 (172)
T ss_pred             HHcCC
Confidence            44444

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=95.01  E-value=0.55  Score=46.90  Aligned_cols=94  Identities=17%  Similarity=0.063  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 002761          104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP--LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVE  181 (883)
Q Consensus       104 ~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P--d~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~  181 (883)
                      ...|..+...+...|++++|+..|++.......|  ...++..+-..+...|+.++|...+....+.......+++.+..
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            4566777777778888999998888876553222  23467777788888888888888888887653222225666666


Q ss_pred             HHH-------HCCCHHHHHHHHH
Q 002761          182 ELV-------RNKYLEDANKVFL  197 (883)
Q Consensus       182 ~y~-------k~G~~eeA~~lf~  197 (883)
                      .|.       +.|+++.|...|+
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~  137 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHH
Confidence            666       6666665544444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.91  E-value=5.5  Score=42.47  Aligned_cols=189  Identities=13%  Similarity=0.070  Sum_probs=111.4

Q ss_pred             CHHHHHHHHHHHHh---CC-CCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCHHH
Q 002761          188 YLEDANKVFLRGAK---GG-LRATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC-QATCGIPEV  261 (883)
Q Consensus       188 ~~eeA~~lf~~M~~---~g-i~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~-y~k~G~~e~  261 (883)
                      +.++..+++.+|..   .| ..++. ..|--++-+....|+.+.|...++.+...-  |...-.-.|=.+ +--.|++++
T Consensus        27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~  104 (289)
T KOG3060|consen   27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKE  104 (289)
T ss_pred             CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhh
Confidence            44555555555532   23 34444 344455556666677777777777776653  332211111111 234577888


Q ss_pred             HHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002761          262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR  341 (883)
Q Consensus       262 A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~  341 (883)
                      |.++++.+.  +.. +-|.++|--=+...-..|   +-.+|++-+.+..+   -+.-|...|.-+-..|...|++++|.-
T Consensus       105 A~e~y~~lL--~dd-pt~~v~~KRKlAilka~G---K~l~aIk~ln~YL~---~F~~D~EAW~eLaeiY~~~~~f~kA~f  175 (289)
T KOG3060|consen  105 AIEYYESLL--EDD-PTDTVIRKRKLAILKAQG---KNLEAIKELNEYLD---KFMNDQEAWHELAEIYLSEGDFEKAAF  175 (289)
T ss_pred             HHHHHHHHh--ccC-cchhHHHHHHHHHHHHcC---CcHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence            888888877  332 556777776666666666   44477777777776   577788888888888888888888888


Q ss_pred             HHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761          342 HFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN  393 (883)
Q Consensus       342 lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~G  393 (883)
                      .++++.-..+.....+.      -|.-+.-..+..-+++-|.++|.+-.+..
T Consensus       176 ClEE~ll~~P~n~l~f~------rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  176 CLEELLLIQPFNPLYFQ------RLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HHHHHHHcCCCcHHHHH------HHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            88888643222211110      11222222233445667777777776554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=94.90  E-value=4.6  Score=47.80  Aligned_cols=99  Identities=11%  Similarity=0.021  Sum_probs=48.7

Q ss_pred             HHHHHHHHHhCCChhhHHHHHHcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 002761           26 IRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPR  105 (883)
Q Consensus        26 yn~LI~~~~k~g~~~~A~~M~~~gv~Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~  105 (883)
                      +.+-+-.|..+|.+++|.+.---|+.-+..-+  |-........++.++......|.-.+-+...-+++|+++|-.|+..
T Consensus       559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~--LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i  636 (1081)
T KOG1538|consen  559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRE--LAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL  636 (1081)
T ss_pred             ccccchhhhhccchhhhhcccccceecchHHH--HHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH
Confidence            44445566778888888554443443333221  1111122223333333322233333334444456667777667665


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH
Q 002761          106 SFHGLVVAYTLNGDHEGAMHSLKR  129 (883)
Q Consensus       106 tyn~LI~a~~~~g~~~~A~~lf~~  129 (883)
                      ...   ..|+-.|++.+|-++|.+
T Consensus       637 LlA---~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  637 LLA---DVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             HHH---HHHHhhhhHHHHHHHHHH
Confidence            432   334556777777777654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=94.81  E-value=0.073  Score=46.70  Aligned_cols=19  Identities=21%  Similarity=0.361  Sum_probs=7.5

Q ss_pred             HHHHHhcCCHHHHHHHHHH
Q 002761          146 ARLFGSKGLATKGLEILAA  164 (883)
Q Consensus       146 I~a~~~~g~~~~A~~l~~~  164 (883)
                      ..+|.+.|++++|..+++.
T Consensus        32 a~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen   32 AQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             HHHHHHTTHHHHHHHHHHC
T ss_pred             HHHHHHCCCHHHHHHHHHH
Confidence            3333444444444444333

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=94.63  E-value=1.2  Score=42.36  Aligned_cols=86  Identities=22%  Similarity=0.188  Sum_probs=40.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---hhHHHHHHHHHHHHCCC
Q 002761          114 YTLNGDHEGAMHSLKRELSAGVRPL--HETLIALARLFGSKGLATKGLEILAAMEKINYD---IRQAWLILVEELVRNKY  188 (883)
Q Consensus       114 ~~~~g~~~~A~~lf~~M~~~Gi~Pd--~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~---pdvtyn~LI~~y~k~G~  188 (883)
                      +-..|+.++|+.+|++-...|+...  ...+..+-+.+...|++++|..+++........   .......+-.++...|+
T Consensus        11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr   90 (120)
T PF12688_consen   11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR   90 (120)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence            3445555555555555555554433  223444445555555555555555555543221   11111222234455555


Q ss_pred             HHHHHHHHHHH
Q 002761          189 LEDANKVFLRG  199 (883)
Q Consensus       189 ~eeA~~lf~~M  199 (883)
                      .++|...+-..
T Consensus        91 ~~eAl~~~l~~  101 (120)
T PF12688_consen   91 PKEALEWLLEA  101 (120)
T ss_pred             HHHHHHHHHHH
Confidence            55555555443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=94.30  E-value=11  Score=41.89  Aligned_cols=192  Identities=12%  Similarity=0.050  Sum_probs=102.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 002761          146 ARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH  224 (883)
Q Consensus       146 I~a~~~~g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~  224 (883)
                      +..+...|+...|......+++..+ -+. .|..--.+|...|.+..|..=++...+..- -+..++--+-.-+...|+.
T Consensus       162 l~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~  239 (504)
T KOG0624|consen  162 LKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDA  239 (504)
T ss_pred             HHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhH
Confidence            3344455666666666666655432 122 444555566666666666554444333111 2223444444455556666


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHH-----------HHHHH--HHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHH---HHHH
Q 002761          225 SNALEIAYEMEAAGRMATTFHF-----------NHLLS--CQATCGIPEVAFATFENMEYGEDYMKPDTETYN---CVIQ  288 (883)
Q Consensus       225 eeA~~lf~~M~~~G~~Pd~~ty-----------n~LI~--~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn---~LI~  288 (883)
                      +.++...++..+.  .||...+           -+|-+  .....+++-++.+-.+...+  ..-.-..++||   .+-.
T Consensus       240 ~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk--~ep~~~~ir~~~~r~~c~  315 (504)
T KOG0624|consen  240 ENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK--NEPEETMIRYNGFRVLCT  315 (504)
T ss_pred             HHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--cCCcccceeeeeeheeee
Confidence            6666666655543  3332211           11111  12344556666665555441  11111223333   3444


Q ss_pred             HHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002761          289 AYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYE  350 (883)
Q Consensus       289 ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~  350 (883)
                      +|...|   ...+|++...+.+.    +.|| +.++.--..+|.-...++.|+.=|+...+..
T Consensus       316 C~~~d~---~~~eAiqqC~evL~----~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  316 CYREDE---QFGEAIQQCKEVLD----IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             cccccC---CHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            555566   45588888888875    6676 6666666678888888888888888877643

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=94.25  E-value=1.3  Score=50.29  Aligned_cols=92  Identities=9%  Similarity=0.008  Sum_probs=78.7

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002761           77 MQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT  156 (883)
Q Consensus        77 ~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~  156 (883)
                      ..+...|+++.|..+|++..+.. +-+...|..+-.+|.+.|++++|+..+++..... +.+...|..+-.+|...|+++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence            34667899999999999999865 3567888889999999999999999999988753 225678888899999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 002761          157 KGLEILAAMEKINY  170 (883)
Q Consensus       157 ~A~~l~~~m~~~g~  170 (883)
                      .|...|++.++...
T Consensus        88 eA~~~~~~al~l~P  101 (356)
T PLN03088         88 TAKAALEKGASLAP  101 (356)
T ss_pred             HHHHHHHHHHHhCC
Confidence            99999999998754

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=94.18  E-value=1.5  Score=43.70  Aligned_cols=91  Identities=14%  Similarity=0.067  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002761          175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRA--TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC  252 (883)
Q Consensus       175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~p--d~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~  252 (883)
                      .|..+...+...|++++|...|++.......+  ...+|..+-..|...|++++|...++...... +....+++.+...
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i  115 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI  115 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence            45555666666677777777666665432111  12356666666666677777776666665432 1123344444444


Q ss_pred             HH-------HcCCHHHHHHHH
Q 002761          253 QA-------TCGIPEVAFATF  266 (883)
Q Consensus       253 y~-------k~G~~e~A~~lf  266 (883)
                      |.       +.|+++.|...|
T Consensus       116 ~~~~~~~~~~~g~~~~A~~~~  136 (168)
T CHL00033        116 CHYRGEQAIEQGDSEIAEAWF  136 (168)
T ss_pred             HHHhhHHHHHcccHHHHHHHH
Confidence            44       555555443333

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=94.17  E-value=7.6  Score=48.37  Aligned_cols=180  Identities=15%  Similarity=0.104  Sum_probs=123.4

Q ss_pred             CHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHH
Q 002761          154 LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA-TDEIYDLMIAEDCKAGDHSNALEIAY  232 (883)
Q Consensus       154 ~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~p-d~~tyn~LI~a~~k~g~~eeA~~lf~  232 (883)
                      +...|+..|=+..+.....-..|..|-..|+..-+...|.+.|+..-+  +.| +...+-.....|++...++.|..+.-
T Consensus       473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            366666666666555444445899999999998899999999998766  333 34678889999999999999998822


Q ss_pred             HHHHcCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 002761          233 EMEAAGRMATTFHFNHLL--SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV  310 (883)
Q Consensus       233 ~M~~~G~~Pd~~tyn~LI--~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~  310 (883)
                      .--+. -..-...+|.+-  -.|.+.++...|..-|+...   +--+.|...|..+..+|...|   +...|++.|.+..
T Consensus       551 ~~~qk-a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL---R~dPkD~n~W~gLGeAY~~sG---ry~~AlKvF~kAs  623 (1238)
T KOG1127|consen  551 RAAQK-APAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL---RTDPKDYNLWLGLGEAYPESG---RYSHALKVFTKAS  623 (1238)
T ss_pred             HHhhh-chHHHHHhhhhhccccccCccchhhHHHHHHHHh---cCCchhHHHHHHHHHHHHhcC---ceehHHHhhhhhH
Confidence            21111 011122233332  23667788888888887765   122457888999999999999   5558999998875


Q ss_pred             hccCCCCCCHHHHHHH-H-HHHHHcCCHHHHHHHHHHHH
Q 002761          311 EDHKRLQPNVKTYALL-V-ECFTKYCAVTEAIRHFRALQ  347 (883)
Q Consensus       311 ~~~~gi~Pd~~Ty~~L-I-~a~~k~G~~eeA~~lf~~M~  347 (883)
                      .    +.|+.. |.-. + ..-|..|.+.+|...+..+.
T Consensus       624 ~----LrP~s~-y~~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  624 L----LRPLSK-YGRFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             h----cCcHhH-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4    677653 3222 1 23567888898888887775

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.17  E-value=13  Score=45.09  Aligned_cols=251  Identities=15%  Similarity=0.092  Sum_probs=154.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH--H
Q 002761          102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVR----PLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ--A  175 (883)
Q Consensus       102 pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~----Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv--t  175 (883)
                      -..++|..+-...-..|+++-|..+++.=...+..    .+..-+...+.-+...|+.+...+++-.|.+.-...+.  +
T Consensus       505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~  584 (829)
T KOG2280|consen  505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT  584 (829)
T ss_pred             CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            34567888887778899999999888653322211    12334667778888889988888877766653211110  0


Q ss_pred             ------HHHHHHHHHHCC------------CHHHHHHHHH--HHH----hCCCCCCHHHHHHHHHHHHHcCChH---HH-
Q 002761          176 ------WLILVEELVRNK------------YLEDANKVFL--RGA----KGGLRATDEIYDLMIAEDCKAGDHS---NA-  227 (883)
Q Consensus       176 ------yn~LI~~y~k~G------------~~eeA~~lf~--~M~----~~gi~pd~~tyn~LI~a~~k~g~~e---eA-  227 (883)
                            -+.|-.-|+|..            +-..+...|.  ...    ..|..|+   ....-++|.+.....   +| 
T Consensus       585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~  661 (829)
T KOG2280|consen  585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKAL  661 (829)
T ss_pred             HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHH
Confidence                  011111222211            1111211111  100    0122222   223334444443311   11 


Q ss_pred             ------HHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHH
Q 002761          228 ------LEIAYEME-AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ  300 (883)
Q Consensus       228 ------~~lf~~M~-~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~  300 (883)
                            +.+.+.+. +.|......|.+--+.-+...|+-..|.++-.+.+      .||-.-|--=+.+++..+   +++
T Consensus       662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk------ipdKr~~wLk~~aLa~~~---kwe  732 (829)
T KOG2280|consen  662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK------IPDKRLWWLKLTALADIK---KWE  732 (829)
T ss_pred             HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC------CcchhhHHHHHHHHHhhh---hHH
Confidence                  12222232 23444455566777777888999999999999999      899999999999999999   666


Q ss_pred             HHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHH
Q 002761          301 DVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRII  380 (883)
Q Consensus       301 eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~  380 (883)
                      +..++-+.+..        .+-|.-++.+|.+.|+.++|.+++.....                 +.-.+.+|.+.|.+.
T Consensus       733 eLekfAkskks--------PIGy~PFVe~c~~~~n~~EA~KYiprv~~-----------------l~ekv~ay~~~~~~~  787 (829)
T KOG2280|consen  733 ELEKFAKSKKS--------PIGYLPFVEACLKQGNKDEAKKYIPRVGG-----------------LQEKVKAYLRVGDVK  787 (829)
T ss_pred             HHHHHHhccCC--------CCCchhHHHHHHhcccHHHHhhhhhccCC-----------------hHHHHHHHHHhccHH
Confidence            76555444421        45677789999999999999999876642                 234789999999999


Q ss_pred             HHHHHHHHH
Q 002761          381 ELLEALEAM  389 (883)
Q Consensus       381 eA~~lf~~M  389 (883)
                      +|.++--+=
T Consensus       788 eAad~A~~~  796 (829)
T KOG2280|consen  788 EAADLAAEH  796 (829)
T ss_pred             HHHHHHHHh
Confidence            998765443

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.85  E-value=0.3  Score=52.16  Aligned_cols=89  Identities=13%  Similarity=0.118  Sum_probs=51.9

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002761           81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLE  160 (883)
Q Consensus        81 k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~  160 (883)
                      +.+.++-....++.|.+.|+..|..+|+.||..+-+..-.                |.. .|..+.-.|-+  +-+-+..
T Consensus        84 ~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~n-vfQ~~F~HYP~--QQ~C~I~  144 (406)
T KOG3941|consen   84 GRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQN-VFQKVFLHYPQ--QQNCAIK  144 (406)
T ss_pred             ccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cHH-HHHHHHhhCch--hhhHHHH
Confidence            4466677777888899999999999999998876654321                110 11111111111  1223455


Q ss_pred             HHHHHHHcCCChhH-HHHHHHHHHHHCCC
Q 002761          161 ILAAMEKINYDIRQ-AWLILVEELVRNKY  188 (883)
Q Consensus       161 l~~~m~~~g~~pdv-tyn~LI~~y~k~G~  188 (883)
                      ++++|...|+.||. +-..||+++++.+.
T Consensus       145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  145 VLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            66666666666665 55566666665554

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=93.78  E-value=0.26  Score=40.98  Aligned_cols=51  Identities=22%  Similarity=0.273  Sum_probs=27.3

Q ss_pred             hcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 002761          151 SKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAK  201 (883)
Q Consensus       151 ~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~  201 (883)
                      +.|++++|..+|..+.+.......++-.+..+|.+.|++++|..+++++..
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345555666666655555433222444555666666666666666665554

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=93.78  E-value=3.5  Score=49.18  Aligned_cols=145  Identities=13%  Similarity=0.078  Sum_probs=94.3

Q ss_pred             CCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHC--------CCHHHHHHHHHHH
Q 002761          133 AGVRPLHETLIALARLFGSKG-----LATKGLEILAAMEKINYDIRQAWLILVEELVRN--------KYLEDANKVFLRG  199 (883)
Q Consensus       133 ~Gi~Pd~~ty~~LI~a~~~~g-----~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~--------G~~eeA~~lf~~M  199 (883)
                      .+.+.|...|...+++.....     ....|..+|++.++........|..+..+|...        .++..+.+.....
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            345667788888888865432     366888899988886543323555443333221        1223344444433


Q ss_pred             HhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCC
Q 002761          200 AKG-GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP  278 (883)
Q Consensus       200 ~~~-gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~p  278 (883)
                      ... ....+...|..+--.+...|++++|...|++....+  |+...|..+-..|...|+.++|...|++..+    +.|
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~----L~P  484 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN----LRP  484 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCC
Confidence            221 123344677777666667789999999999988875  6788888899999999999999999887552    345


Q ss_pred             CHHHH
Q 002761          279 DTETY  283 (883)
Q Consensus       279 d~~ty  283 (883)
                      ...||
T Consensus       485 ~~pt~  489 (517)
T PRK10153        485 GENTL  489 (517)
T ss_pred             CCchH
Confidence            54454

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=93.68  E-value=5.6  Score=47.10  Aligned_cols=55  Identities=15%  Similarity=0.072  Sum_probs=40.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002761          319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA  390 (883)
Q Consensus       319 d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~  390 (883)
                      +..+...+-.-+-+...+-.|-++|..|-.                 -.++++.....|++.+|+.+-++..
T Consensus       746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-----------------~ksiVqlHve~~~W~eAFalAe~hP  800 (1081)
T KOG1538|consen  746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD-----------------LKSLVQLHVETQRWDEAFALAEKHP  800 (1081)
T ss_pred             hhhHHHHHHHHHhhccccchHHHHHHHhcc-----------------HHHHhhheeecccchHhHhhhhhCc
Confidence            344555555556667778889999988854                 2468888899999999999988763

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=93.67  E-value=0.16  Score=44.44  Aligned_cols=77  Identities=14%  Similarity=0.144  Sum_probs=32.8

Q ss_pred             CCHHHHHHHHHHHHHcCCC-hhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHH
Q 002761          153 GLATKGLEILAAMEKINYD-IRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALE  229 (883)
Q Consensus       153 g~~~~A~~l~~~m~~~g~~-pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~  229 (883)
                      |+++.|..+++++.+.... ++. .+-.+..+|.+.|++++|..+++. .+  ..|+. ...-.+-.+|.+.|++++|.+
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            4455555555555544331 122 333345555555555555555544 11  11111 122222344445555555555


Q ss_pred             HHH
Q 002761          230 IAY  232 (883)
Q Consensus       230 lf~  232 (883)
                      +|+
T Consensus        80 ~l~   82 (84)
T PF12895_consen   80 ALE   82 (84)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            544

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=93.54  E-value=18  Score=45.34  Aligned_cols=285  Identities=11%  Similarity=-0.007  Sum_probs=148.7

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCHH
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIAL--ARLFGSKGLAT  156 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~L--I~a~~~~g~~~  156 (883)
                      |-..++...|..-|....+.. +.|...|..|..+|.++|++..|+++|.+...  +.|+. +|...  --.-|..|.+.
T Consensus       572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYk  647 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYK  647 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHH
Confidence            455667777777777766554 34677888888888888888888888877544  45543 23222  12235677888


Q ss_pred             HHHHHHHHHHHcCCCh-----h-H-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----hH
Q 002761          157 KGLEILAAMEKINYDI-----R-Q-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGD----HS  225 (883)
Q Consensus       157 ~A~~l~~~m~~~g~~p-----d-v-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~----~e  225 (883)
                      +|...+...+...-.-     + . ++--+...+.-.|-...|...|+.-.+       ...++++...+....    ..
T Consensus       648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie-------~f~~~l~h~~~~~~~~Wi~as  720 (1238)
T KOG1127|consen  648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE-------SFIVSLIHSLQSDRLQWIVAS  720 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-------HHHHHHHHhhhhhHHHHHHHh
Confidence            8888777665431100     0 1 222222223333434444444444332       122223322222111    23


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH---H---HHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH----cCC
Q 002761          226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP---E---VAFATFENMEYGEDYMKPDTETYNCVIQAYTR----AES  295 (883)
Q Consensus       226 eA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~---e---~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~----~G~  295 (883)
                      .|..+|.... .. .|+.....+|..-.-+.+..   +   -|.+.+-.-.    .+.-+..+|.-|...|.+    .|.
T Consensus       721 dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl----sl~~~~~~WyNLGinylr~f~~l~e  794 (1238)
T KOG1127|consen  721 DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL----SLAIHMYPWYNLGINYLRYFLLLGE  794 (1238)
T ss_pred             HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH----HHhhccchHHHHhHHHHHHHHHcCC
Confidence            4444555444 11 33333333333323333332   1   1111111111    112235566555555554    221


Q ss_pred             c-ccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHH
Q 002761          296 Y-DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC  374 (883)
Q Consensus       296 ~-d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~  374 (883)
                      . ++...|+..+.+-++.   ..-|..+|+. +...+..|++.-|...|-.-+-..         ..|..+|..+--.+.
T Consensus       795 t~~~~~~Ai~c~KkaV~L---~ann~~~Wna-LGVlsg~gnva~aQHCfIks~~se---------p~~~~~W~NlgvL~l  861 (1238)
T KOG1127|consen  795 TMKDACTAIRCCKKAVSL---CANNEGLWNA-LGVLSGIGNVACAQHCFIKSRFSE---------PTCHCQWLNLGVLVL  861 (1238)
T ss_pred             cchhHHHHHHHHHHHHHH---hhccHHHHHH-HHHhhccchhhhhhhhhhhhhhcc---------ccchhheeccceeEE
Confidence            1 1345788888887751   2234455554 444577788877777765443221         222235777777788


Q ss_pred             HcCCHHHHHHHHHHHhhCC
Q 002761          375 REGRIIELLEALEAMAKDN  393 (883)
Q Consensus       375 ~~G~~~eA~~lf~~M~~~G  393 (883)
                      +..+++.|...|.......
T Consensus       862 ~n~d~E~A~~af~~~qSLd  880 (1238)
T KOG1127|consen  862 ENQDFEHAEPAFSSVQSLD  880 (1238)
T ss_pred             ecccHHHhhHHHHhhhhcC
Confidence            8999999999999886654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.51  E-value=15  Score=40.87  Aligned_cols=295  Identities=14%  Similarity=0.054  Sum_probs=171.3

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHH
Q 002761          117 NGDHEGAMHSLKRELSAGVRPLHETLIALAR-LFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKV  195 (883)
Q Consensus       117 ~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~-a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~l  195 (883)
                      .-.+.+|++++.+....  .|+-...|.-+. +|.+...++-+.++++--.+.-...+..-|.......+.=.-..|..-
T Consensus       164 R~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E  241 (557)
T KOG3785|consen  164 RMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDE  241 (557)
T ss_pred             HHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHH
Confidence            34678999999988764  345555554444 556777788888888876665333333566665555553222233333


Q ss_pred             HHHHHhCC--------------------------CCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 002761          196 FLRGAKGG--------------------------LRATD-----EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTF  244 (883)
Q Consensus       196 f~~M~~~g--------------------------i~pd~-----~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~  244 (883)
                      ..++...+                          +-|..     ..--.|+--|.+.+++.+|..+.+++.-  ..|-.+
T Consensus       242 ~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~Ey  319 (557)
T KOG3785|consen  242 KKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEY  319 (557)
T ss_pred             HHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHH
Confidence            34433221                          01111     1112233346778888888887765421  223333


Q ss_pred             HHHHHHHH-----HHHcCCHHHHHHHHHHchhCCCCCCCCHH-HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC
Q 002761          245 HFNHLLSC-----QATCGIPEVAFATFENMEYGEDYMKPDTE-TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP  318 (883)
Q Consensus       245 tyn~LI~~-----y~k~G~~e~A~~lf~~M~~g~~gi~pd~~-tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P  318 (883)
                      ..-.++.+     .....++..|.+.|.-.-  +++..-|.. ---+|.+.+.-.-   +.++++-.++.+..   =+.-
T Consensus       320 ilKgvv~aalGQe~gSreHlKiAqqffqlVG--~Sa~ecDTIpGRQsmAs~fFL~~---qFddVl~YlnSi~s---YF~N  391 (557)
T KOG3785|consen  320 ILKGVVFAALGQETGSREHLKIAQQFFQLVG--ESALECDTIPGRQSMASYFFLSF---QFDDVLTYLNSIES---YFTN  391 (557)
T ss_pred             HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc--ccccccccccchHHHHHHHHHHH---HHHHHHHHHHHHHH---HhcC
Confidence            33333322     222235677888887665  555443332 2345666666666   44588888888765   2333


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHH-HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 002761          319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL-SLYLRALCREGRIIELLEALEAMAKDNQPVP  397 (883)
Q Consensus       319 d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtY-n~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~  397 (883)
                      |...--.+..+++-.|.+.+|.++|-.+....+....         +| +.|...|.++|+++-|.+++-+|..     |
T Consensus       392 dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~---------~Y~s~LArCyi~nkkP~lAW~~~lk~~t-----~  457 (557)
T KOG3785|consen  392 DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKI---------LYKSMLARCYIRNKKPQLAWDMMLKTNT-----P  457 (557)
T ss_pred             cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhH---------HHHHHHHHHHHhcCCchHHHHHHHhcCC-----c
Confidence            3333335678999999999999999877643333333         34 4567889999999999998877732     2


Q ss_pred             CcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccce
Q 002761          398 PRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGF  463 (883)
Q Consensus       398 p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~  463 (883)
                      .+.+       +|                 .-+++.-|.+.+..--|-+-|+++..  +.|+..-|
T Consensus       458 ~e~f-------sL-----------------LqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW  497 (557)
T KOG3785|consen  458 SERF-------SL-----------------LQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW  497 (557)
T ss_pred             hhHH-------HH-----------------HHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence            2221       11                 23455666666666555555554433  56766668

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=93.44  E-value=20  Score=42.04  Aligned_cols=102  Identities=11%  Similarity=0.016  Sum_probs=77.2

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL-HETLIALARLFGSKGLATK  157 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd-~~ty~~LI~a~~~~g~~~~  157 (883)
                      .+..|+++.|...|-+-.... ++|.+.|+.=..+|++.|++++|++=-.+-++  +.|+ ...|+-.-.++.-.|++++
T Consensus        12 a~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e   88 (539)
T KOG0548|consen   12 AFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE   88 (539)
T ss_pred             hcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence            556799999999999888765 45888899999999999999998875544433  5666 3468888888888899999


Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHH
Q 002761          158 GLEILAAMEKINYDIRQAWLILVEEL  183 (883)
Q Consensus       158 A~~l~~~m~~~g~~pdvtyn~LI~~y  183 (883)
                      |..-|.+=++........++-|..++
T Consensus        89 A~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   89 AILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            99998877765433333566666655

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=93.43  E-value=0.65  Score=44.52  Aligned_cols=79  Identities=9%  Similarity=-0.012  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHH---------------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC
Q 002761          209 EIYDLMIAEDCKAGDHSNALEIAYEME---------------AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE  273 (883)
Q Consensus       209 ~tyn~LI~a~~k~g~~eeA~~lf~~M~---------------~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~  273 (883)
                      .++.++|-++++.|+++....+++..=               .....|+..+..+++.+|+..|++..|.++.+...+ .
T Consensus         3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~-~   81 (126)
T PF12921_consen    3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR-K   81 (126)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH-H
Confidence            444555555555555555544443321               112334444444444444444444444444444442 2


Q ss_pred             CCCCCCHHHHHHHHH
Q 002761          274 DYMKPDTETYNCVIQ  288 (883)
Q Consensus       274 ~gi~pd~~tyn~LI~  288 (883)
                      -++.-+..+|..|+.
T Consensus        82 Y~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   82 YPIPIPKEFWRRLLE   96 (126)
T ss_pred             cCCCCCHHHHHHHHH
Confidence            233334444444444

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=93.26  E-value=21  Score=41.81  Aligned_cols=101  Identities=14%  Similarity=0.099  Sum_probs=80.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH--HHHHHHHHHHHCCCHH
Q 002761          113 AYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ--AWLILVEELVRNKYLE  190 (883)
Q Consensus       113 a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv--tyn~LI~~y~k~G~~e  190 (883)
                      +.+..|+++.|+.+|.+..... ++|.+-|+.=..+|++.|++++|.+=-.+-++.  .|+.  .|+-+-.++.-.|+++
T Consensus        11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~   87 (539)
T KOG0548|consen   11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE   87 (539)
T ss_pred             hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence            4567899999999999877654 348999999999999999999998866655554  5554  8999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 002761          191 DANKVFLRGAKGGLRATD-EIYDLMIAED  218 (883)
Q Consensus       191 eA~~lf~~M~~~gi~pd~-~tyn~LI~a~  218 (883)
                      +|..-|.+-.+.  .|+. ..++-+..++
T Consensus        88 eA~~ay~~GL~~--d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   88 EAILAYSEGLEK--DPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHHHHHHHhhc--CCchHHHHHhHHHhh
Confidence            999999987663  3443 6666666665

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=93.03  E-value=4.9  Score=47.98  Aligned_cols=136  Identities=13%  Similarity=-0.067  Sum_probs=95.1

Q ss_pred             CCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC--------CHHHHHHHHHH
Q 002761           99 GLSPGPRSFHGLVVAYTLNG-----DHEGAMHSLKRELSAGVRPL-HETLIALARLFGSKG--------LATKGLEILAA  164 (883)
Q Consensus        99 G~~pd~~tyn~LI~a~~~~g-----~~~~A~~lf~~M~~~Gi~Pd-~~ty~~LI~a~~~~g--------~~~~A~~l~~~  164 (883)
                      +.+.|...|...+.|.....     ....|..+|++..+.  .|+ ...|..+..++....        ++..+.+....
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            44678899999999876532     377899999998874  565 344444433332211        22334444444


Q ss_pred             HHHcCCCh-hH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761          165 MEKINYDI-RQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG  238 (883)
Q Consensus       165 m~~~g~~p-dv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G  238 (883)
                      .......+ +. .|.++--.+...|++++|...|++....+  |+...|..+-..+...|+.++|.+.+++.....
T Consensus       410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR  483 (517)
T ss_pred             hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            33322122 23 67777666667899999999999999854  788999999999999999999999998887653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=92.80  E-value=0.88  Score=44.19  Aligned_cols=58  Identities=24%  Similarity=0.284  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002761          107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM  165 (883)
Q Consensus       107 yn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m  165 (883)
                      ...++..+...|++++|..+...+.... +-|...|..+|.+|...|+...|.++|..+
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            3334444444444555544444444321 113444444455555555555444444443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=92.74  E-value=1.1  Score=47.94  Aligned_cols=106  Identities=13%  Similarity=0.130  Sum_probs=71.7

Q ss_pred             CCCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCC
Q 002761          205 RATDEIYDLMIAEDCK-----AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD  279 (883)
Q Consensus       205 ~pd~~tyn~LI~a~~k-----~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd  279 (883)
                      ..|..+|-+++..|..     .+.++-....++.|.+.|+.-|..+|+.||+.+-|-.                  +.|.
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk------------------fiP~  125 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK------------------FIPQ  125 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc------------------cccH
Confidence            4566777777777764     3556666677888889999999999998887654432                  2222


Q ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCH
Q 002761          280 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV  336 (883)
Q Consensus       280 ~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~  336 (883)
                      .+ +-.+.-.|-+..     +-+++++++|..  .|+.||..+-..||++|.+.+-.
T Consensus       126 nv-fQ~~F~HYP~QQ-----~C~I~vLeqME~--hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  126 NV-FQKVFLHYPQQQ-----NCAIKVLEQMEW--HGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             HH-HHHHHhhCchhh-----hHHHHHHHHHHH--cCCCCchHHHHHHHHHhcccccc
Confidence            21 222222333332     357788888887  68888888888888888887754

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=92.69  E-value=2.9  Score=39.73  Aligned_cols=86  Identities=13%  Similarity=0.065  Sum_probs=44.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCChhH---HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCC---H-HHHHHHHHHHHH
Q 002761          148 LFGSKGLATKGLEILAAMEKINYDIRQ---AWLILVEELVRNKYLEDANKVFLRGAKGGLRAT---D-EIYDLMIAEDCK  220 (883)
Q Consensus       148 a~~~~g~~~~A~~l~~~m~~~g~~pdv---tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd---~-~tyn~LI~a~~k  220 (883)
                      ++-..|+.++|..+|++....|+....   .+-.+-+.|...|++++|..+|++.....  |+   . .....+--++..
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~   87 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYN   87 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHH
Confidence            444556666666666666666654432   34445555666666666666666655421  22   1 111112234455


Q ss_pred             cCChHHHHHHHHHHH
Q 002761          221 AGDHSNALEIAYEME  235 (883)
Q Consensus       221 ~g~~eeA~~lf~~M~  235 (883)
                      .|+.++|+..+-...
T Consensus        88 ~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   88 LGRPKEALEWLLEAL  102 (120)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            566666665554433

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.64  E-value=13  Score=39.91  Aligned_cols=275  Identities=11%  Similarity=0.011  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHHHhCCChhhHHHHHHc---CCCCChhHHHHHHHHH--HccCChHHHHH-HHH--HHhcCChHHHHHHHHH
Q 002761           23 VVPIRSAMSSPEKKTRRKKQQRRQQK---HGDSLLSTNGSVVSAA--EQGLRLIFMEE-LMQ--HARNRDAPRVNDVIYD   94 (883)
Q Consensus        23 ~~syn~LI~~~~k~g~~~~A~~M~~~---gv~Pd~~ty~~ll~a~--~~~~~~~~~~~-L~~--~~k~G~~~~A~~lf~~   94 (883)
                      ...|+.=+..+.+-+++++|..-+..   --.||.+ |...=..+  .+..-+.|... +++  ..+.|+..+.+.-+..
T Consensus        69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~  147 (366)
T KOG2796|consen   69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK  147 (366)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            34466667788888888888322221   1112211 11110111  11122233322 222  2344555555544444


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH
Q 002761           95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ  174 (883)
Q Consensus        95 M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv  174 (883)
                      +.        ..-.-+|.-+-.....+..++++++-.       ....+.+++.+.-.|.+.-...++...++...+-+.
T Consensus       148 L~--------~~V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p  212 (366)
T KOG2796|consen  148 LK--------TVVSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP  212 (366)
T ss_pred             HH--------HHHHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccH
Confidence            43        112233444444444466777776533       245566777777777777777888888876654444


Q ss_pred             -HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 002761          175 -AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI-----AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH  248 (883)
Q Consensus       175 -tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI-----~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~  248 (883)
                       ....|...-.+.|+.+.|...|+...+..-+.|..+++.++     ..|.-.+++..|...|.+.....-. |.+.-|.
T Consensus       213 ~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~Nn  291 (366)
T KOG2796|consen  213 QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNN  291 (366)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhch
Confidence             56777777788888888888888776543344444444443     3345567788888888777665322 3444443


Q ss_pred             HHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC--cccHHHHHHHHHHhHhccCCCCCCHH
Q 002761          249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES--YDRVQDVAELLGMMVEDHKRLQPNVK  321 (883)
Q Consensus       249 LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~--~d~~~eAl~lf~~M~~~~~gi~Pd~~  321 (883)
                      =.-+..-.|+..+|.+..+.|.+    ..|...+-++++--++..-.  +....+....+.+-+.   |..||.+
T Consensus       292 KALcllYlg~l~DAiK~~e~~~~----~~P~~~l~es~~~nL~tmyEL~Ys~~~~~k~~l~~~ia---~~~~d~f  359 (366)
T KOG2796|consen  292 KALCLLYLGKLKDALKQLEAMVQ----QDPRHYLHESVLFNLTTMYELEYSRSMQKKQALLEAVA---GKEGDSF  359 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc----cCCccchhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHh---ccCCCcc
Confidence            33333345788889888888873    24555555544333222110  0011133344555554   7778764

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=92.62  E-value=31  Score=42.12  Aligned_cols=261  Identities=12%  Similarity=0.055  Sum_probs=171.0

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HcCCHHHH-------------------HH----HHHHHHHC
Q 002761           80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYT---LNGDHEGA-------------------MH----SLKRELSA  133 (883)
Q Consensus        80 ~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~---~~g~~~~A-------------------~~----lf~~M~~~  133 (883)
                      .+.++...+..-+......+..-+..++..+-.++.   ..++.+++                   .-    ++.++...
T Consensus       238 ~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~  317 (799)
T KOG4162|consen  238 KKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLK  317 (799)
T ss_pred             cCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHh
Confidence            344555666666666655555555555555444332   23333333                   22    23344445


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 002761          134 GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL  213 (883)
Q Consensus       134 Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~  213 (883)
                      .+.-|...|..|--+..+.|++..+-+.|++....-+.-...|+.+-..|..+|.-..|..+.++-....-.|+..+--.
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L  397 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL  397 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence            56778888999999999999999999999988876554444899999999999999999999988655433355554444


Q ss_pred             HHHHHH--HcCChHHHHHHHHHHHHc--CCC--CCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHchhCCCCC
Q 002761          214 MIAEDC--KAGDHSNALEIAYEMEAA--GRM--ATTFHFNHLLSCQATC-----------GIPEVAFATFENMEYGEDYM  276 (883)
Q Consensus       214 LI~a~~--k~g~~eeA~~lf~~M~~~--G~~--Pd~~tyn~LI~~y~k~-----------G~~e~A~~lf~~M~~g~~gi  276 (883)
                      |+...|  +.+.+++++..-......  |..  .....|-.+--+|...           ....++.+.+++..+ ..+-
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-~d~~  476 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-FDPT  476 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-cCCC
Confidence            554444  346677777766666551  111  1223333333344322           234567777777763 4556


Q ss_pred             CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002761          277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN  348 (883)
Q Consensus       277 ~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~  348 (883)
                      .|++..|-++-.+..  +   ....|++..++..+  -+-.-+...|..|.-.++-.+++.+|+.+.+....
T Consensus       477 dp~~if~lalq~A~~--R---~l~sAl~~~~eaL~--l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~  541 (799)
T KOG4162|consen  477 DPLVIFYLALQYAEQ--R---QLTSALDYAREALA--LNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE  541 (799)
T ss_pred             CchHHHHHHHHHHHH--H---hHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            788888877765544  4   56799999999887  34455777888887888889999999999887764

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=92.34  E-value=0.46  Score=39.42  Aligned_cols=51  Identities=18%  Similarity=0.222  Sum_probs=26.0

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002761           81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELS  132 (883)
Q Consensus        81 k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~  132 (883)
                      +.|+++.|..+|+.+.... +-+...+-.+..+|.+.|++++|..+++++..
T Consensus         3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455555555555555442 22444455555555555555555555555544

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=92.31  E-value=20  Score=39.14  Aligned_cols=150  Identities=16%  Similarity=0.150  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCChh-H-HHHH
Q 002761          106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSK-GLATKGLEILAAMEKI----NYDIR-Q-AWLI  178 (883)
Q Consensus       106 tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~-g~~~~A~~l~~~m~~~----g~~pd-v-tyn~  178 (883)
                      .|...+..|...|++..|-.++.++               -..|-.. |+++.|.+.|.+....    |-... . ++..
T Consensus        96 ~~~~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~  160 (282)
T PF14938_consen   96 CYEKAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK  160 (282)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence            3455556677777777776666554               3455566 7899999988877643    42222 2 6778


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC--HHHHHH
Q 002761          179 LVEELVRNKYLEDANKVFLRGAKGGLR-----ATDE-IYDLMIAEDCKAGDHSNALEIAYEMEAA--GRMAT--TFHFNH  248 (883)
Q Consensus       179 LI~~y~k~G~~eeA~~lf~~M~~~gi~-----pd~~-tyn~LI~a~~k~g~~eeA~~lf~~M~~~--G~~Pd--~~tyn~  248 (883)
                      +...+.+.|++++|..+|++....-..     .+.. .|-..+-++...|++..|.+.|+.....  ++..+  ......
T Consensus       161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~  240 (282)
T PF14938_consen  161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED  240 (282)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence            888999999999999999998764322     2222 2223333556679999999999988754  33322  345566


Q ss_pred             HHHHHHH--cCCHHHHHHHHHHch
Q 002761          249 LLSCQAT--CGIPEVAFATFENME  270 (883)
Q Consensus       249 LI~~y~k--~G~~e~A~~lf~~M~  270 (883)
                      ||.+|-.  ...+..|..-|+.+.
T Consensus       241 l~~A~~~~D~e~f~~av~~~d~~~  264 (282)
T PF14938_consen  241 LLEAYEEGDVEAFTEAVAEYDSIS  264 (282)
T ss_dssp             HHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred             HHHHHHhCCHHHHHHHHHHHcccC
Confidence            7777654  345777888888877

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=92.12  E-value=1.3  Score=42.48  Aligned_cols=50  Identities=16%  Similarity=0.071  Sum_probs=24.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 002761          204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA-AGRMATTFHFNHLLSCQ  253 (883)
Q Consensus       204 i~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~-~G~~Pd~~tyn~LI~~y  253 (883)
                      +.|+..+..+++.+|+.+|++..|+++.+...+ -++.-+..+|..|+.-.
T Consensus        48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            345555555555555555555555555544432 23444455555555443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.07  E-value=1.6  Score=47.39  Aligned_cols=98  Identities=14%  Similarity=0.115  Sum_probs=71.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHH
Q 002761          114 YTLNGDHEGAMHSLKRELSAGVRP-LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDA  192 (883)
Q Consensus       114 ~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA  192 (883)
                      +.+.+++.+|+..|.+.+..  .| |.+-|..=-.+|++.|.++.|.+-....+........+|..|-.+|...|++++|
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence            45678888888888887764  33 5566677778888888888888777777665433333888888888888888888


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHH
Q 002761          193 NKVFLRGAKGGLRATDEIYDLMI  215 (883)
Q Consensus       193 ~~lf~~M~~~gi~pd~~tyn~LI  215 (883)
                      .+.|++-.+  +.|+..+|-.=+
T Consensus       169 ~~aykKaLe--ldP~Ne~~K~nL  189 (304)
T KOG0553|consen  169 IEAYKKALE--LDPDNESYKSNL  189 (304)
T ss_pred             HHHHHhhhc--cCCCcHHHHHHH
Confidence            888887766  667777665433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=91.86  E-value=9  Score=39.65  Aligned_cols=172  Identities=13%  Similarity=0.059  Sum_probs=78.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCChh--H-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCC
Q 002761          149 FGSKGLATKGLEILAAMEKINYDIR--Q-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATD--EIYDLMIAEDCKAGD  223 (883)
Q Consensus       149 ~~~~g~~~~A~~l~~~m~~~g~~pd--v-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~--~tyn~LI~a~~k~g~  223 (883)
                      +...|++.+|...|..+...-....  . ..-.+..+|-+.|+++.|...|+++.+.-  |+.  .-+...+.|.+....
T Consensus        15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y~~g~~~~~~   92 (203)
T PF13525_consen   15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALYMLGLSYYKQ   92 (203)
T ss_dssp             HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHh
Confidence            3455666666666666665432211  1 44455666666777777777776665532  221  223333333322111


Q ss_pred             hHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 002761          224 HSNALEIAYEMEAAGRMAT-------TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY  296 (883)
Q Consensus       224 ~eeA~~lf~~M~~~G~~Pd-------~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~  296 (883)
                      .....         ....|       ...|..+|.-|=......+|...+..+..      .=...--.+..-|.+.|  
T Consensus        93 ~~~~~---------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~------~la~~e~~ia~~Y~~~~--  155 (203)
T PF13525_consen   93 IPGIL---------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN------RLAEHELYIARFYYKRG--  155 (203)
T ss_dssp             HHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH------HHHHHHHHHHHHHHCTT--
T ss_pred             Cccch---------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHcc--
Confidence            11110         00000       12445555556666666666655555541      00111112445567777  


Q ss_pred             ccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002761          297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI  340 (883)
Q Consensus       297 d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~  340 (883)
                       ....|..-|+.+++...+..-.......++.+|-+.|..+.|.
T Consensus       156 -~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  156 -KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             --HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             -cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence             4557777777777631111111123355666777777766443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=91.71  E-value=39  Score=41.29  Aligned_cols=341  Identities=14%  Similarity=0.062  Sum_probs=187.4

Q ss_pred             CHHHHHHHHHHHHhCCChhhHHHHHHc--CCC--CChhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002761           22 GVVPIRSAMSSPEKKTRRKKQQRRQQK--HGD--SLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIA   97 (883)
Q Consensus        22 d~~syn~LI~~~~k~g~~~~A~~M~~~--gv~--Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~   97 (883)
                      ....|+.+-..|+..|.-..|..+++.  +..  |+..+--.++...|-. ++........|+     ..|...+..+. 
T Consensus       356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e-~l~~~eegldYA-----~kai~~~~~~~-  428 (799)
T KOG4162|consen  356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIE-RLKLVEEGLDYA-----QKAISLLGGQR-  428 (799)
T ss_pred             hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHh-chhhhhhHHHHH-----HHHHHHhhhhh-
Confidence            345577777777777776677555544  334  4434433333333222 222222222222     11222221111 


Q ss_pred             CCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002761           98 AGLSPGPRSFHGLVVAYTLN-----------GDHEGAMHSLKRELSAG-VRPLHETLIALARLFGSKGLATKGLEILAAM  165 (883)
Q Consensus        98 ~G~~pd~~tyn~LI~a~~~~-----------g~~~~A~~lf~~M~~~G-i~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m  165 (883)
                       + ......|-.+--+|...           ....++++.+++..+.+ -.|+..-|-++-.  +-.++++.|.....+.
T Consensus       429 -~-~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~--A~~R~l~sAl~~~~ea  504 (799)
T KOG4162|consen  429 -S-HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQY--AEQRQLTSALDYAREA  504 (799)
T ss_pred             -h-hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH--HHHHhHHHHHHHHHHH
Confidence             1 12233444444444321           12345666777665543 4455555555544  3456788888888888


Q ss_pred             HHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCC------------------CCHHHHHHHHHHHHH-----
Q 002761          166 EKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKG-GLR------------------ATDEIYDLMIAEDCK-----  220 (883)
Q Consensus       166 ~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~-gi~------------------pd~~tyn~LI~a~~k-----  220 (883)
                      .+.+-..+. .|..|.-.+...+++.+|+.+.+.-... |..                  --..|...++.-+-.     
T Consensus       505 L~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q  584 (799)
T KOG4162|consen  505 LALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQ  584 (799)
T ss_pred             HHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHh
Confidence            887555555 7888877888888888888887765431 210                  001222222222210     


Q ss_pred             -cC-----------------ChHHHHHHHHHH--------HHcC---------CC--CC------HHHHHHHHHHHHHcC
Q 002761          221 -AG-----------------DHSNALEIAYEM--------EAAG---------RM--AT------TFHFNHLLSCQATCG  257 (883)
Q Consensus       221 -~g-----------------~~eeA~~lf~~M--------~~~G---------~~--Pd------~~tyn~LI~~y~k~G  257 (883)
                       .+                 +..+|....+.+        ...|         +.  |+      ...|....+.+.+.+
T Consensus       585 ~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~  664 (799)
T KOG4162|consen  585 QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSG  664 (799)
T ss_pred             hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcC
Confidence             00                 000111000000        0001         00  11      122344556677777


Q ss_pred             CHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH-HHHHHHHHHHHcCCH
Q 002761          258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK-TYALLVECFTKYCAV  336 (883)
Q Consensus       258 ~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~-Ty~~LI~a~~k~G~~  336 (883)
                      ..++|...+.+..   ....-....|.-.-..+...|   ..++|.+.|.....    +.|+.+ ..+++-.++.+.|+.
T Consensus       665 ~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~---~~~EA~~af~~Al~----ldP~hv~s~~Ala~~lle~G~~  734 (799)
T KOG4162|consen  665 NDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKG---QLEEAKEAFLVALA----LDPDHVPSMTALAELLLELGSP  734 (799)
T ss_pred             CchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHH---hhHHHHHHHHHHHh----cCCCCcHHHHHHHHHHHHhCCc
Confidence            7788876666655   111223344444445566667   56689988888765    778754 567788899999988


Q ss_pred             HHHHH--HHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 002761          337 TEAIR--HFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD  392 (883)
Q Consensus       337 eeA~~--lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~  392 (883)
                      ..|..  ++..+.+.+.         .|++.|-.+-..+-+.|+.+.|-+.|..-.+.
T Consensus       735 ~la~~~~~L~dalr~dp---------~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  735 RLAEKRSLLSDALRLDP---------LNHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             chHHHHHHHHHHHhhCC---------CCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            88888  8888887543         23446889999999999999999999876554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.55  E-value=3.3  Score=44.22  Aligned_cols=143  Identities=10%  Similarity=-0.016  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--
Q 002761          175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC--  252 (883)
Q Consensus       175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~--  252 (883)
                      +-+.++..+.-.|.+.-...++.+..+...+-+.+..+.|.+.-.+.|+.+.|...|+...+..-+.|..+++.++..  
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            445666666667777777888888877666666777777888888888888888888877765545555555555443  


Q ss_pred             ---HHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHH
Q 002761          253 ---QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV  327 (883)
Q Consensus       253 ---y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI  327 (883)
                         |.-..++..|.+.|+++..  . -..|.+.-|.=.-...-.|   ++.+|++....|..    ..|...+-++++
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~--~-D~~~~~a~NnKALcllYlg---~l~DAiK~~e~~~~----~~P~~~l~es~~  326 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILR--M-DPRNAVANNNKALCLLYLG---KLKDALKQLEAMVQ----QDPRHYLHESVL  326 (366)
T ss_pred             hhheecccchHHHHHHHhhccc--c-CCCchhhhchHHHHHHHHH---HHHHHHHHHHHHhc----cCCccchhhhHH
Confidence               4556777888888877762  1 1233444443222333345   66688888888865    556666655554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=91.27  E-value=0.9  Score=37.39  Aligned_cols=50  Identities=18%  Similarity=0.228  Sum_probs=19.0

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 002761          150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG  199 (883)
Q Consensus       150 ~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M  199 (883)
                      .+.|++++|...|+++++........+..+-.++.+.|++++|..+|++.
T Consensus         8 ~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   57 (65)
T PF13432_consen    8 YQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA   57 (65)
T ss_dssp             HHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33444444444444444333111113344444444444444444444443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=91.27  E-value=5.4  Score=39.66  Aligned_cols=87  Identities=11%  Similarity=-0.042  Sum_probs=46.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHH
Q 002761          113 AYTLNGDHEGAMHSLKRELSAGVRPLHE-TLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLED  191 (883)
Q Consensus       113 a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~-ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~ee  191 (883)
                      .+...|++++|..+|+-+...  .|... -|-.|--+|-..|++.+|...|.......+..-..+-.+-.+|.+.|+.+.
T Consensus        44 ~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~  121 (157)
T PRK15363         44 QLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCY  121 (157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH
Confidence            344556666666666655442  33322 233444444445666666666666665553222344455556666666666


Q ss_pred             HHHHHHHHHh
Q 002761          192 ANKVFLRGAK  201 (883)
Q Consensus       192 A~~lf~~M~~  201 (883)
                      |.+-|+....
T Consensus       122 A~~aF~~Ai~  131 (157)
T PRK15363        122 AIKALKAVVR  131 (157)
T ss_pred             HHHHHHHHHH
Confidence            6666665544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=91.10  E-value=24  Score=37.72  Aligned_cols=167  Identities=8%  Similarity=-0.019  Sum_probs=91.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHH-
Q 002761          111 VVAYTLNGDHEGAMHSLKRELSAGVRPLHETL---IALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVR-  185 (883)
Q Consensus       111 I~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty---~~LI~a~~~~g~~~~A~~l~~~m~~~g~~-pdvtyn~LI~~y~k-  185 (883)
                      ...+.+.|++++|.+.|+++...-..+ ....   -.+..++.+.++++.|...+++.++.... |++-|...+.+++. 
T Consensus        39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~  117 (243)
T PRK10866         39 AQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM  117 (243)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence            334456788888888888887642222 2222   34556777888888888888888776443 33355555555442 


Q ss_pred             -CC---------------CH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 002761          186 -NK---------------YL---EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF  246 (883)
Q Consensus       186 -~G---------------~~---eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~ty  246 (883)
                       .+               +.   ..|+..               +..+|.-|-...-..+|...+..+...    =...-
T Consensus       118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~---------------~~~li~~yP~S~ya~~A~~rl~~l~~~----la~~e  178 (243)
T PRK10866        118 ALDDSALQGFFGVDRSDRDPQHARAAFRD---------------FSKLVRGYPNSQYTTDATKRLVFLKDR----LAKYE  178 (243)
T ss_pred             hcchhhhhhccCCCccccCHHHHHHHHHH---------------HHHHHHHCcCChhHHHHHHHHHHHHHH----HHHHH
Confidence             11               11   122233               334444454444455555544444322    00011


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcc
Q 002761          247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD  297 (883)
Q Consensus       247 n~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d  297 (883)
                      -.+...|-+.|.+..|..=|+.+.+.=.+.+......-.|+.+|...|..+
T Consensus       179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~  229 (243)
T PRK10866        179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNA  229 (243)
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChH
Confidence            144556777888877777777776311222333445556777888888444

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=91.09  E-value=1.3  Score=43.08  Aligned_cols=58  Identities=21%  Similarity=0.245  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002761          176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM  234 (883)
Q Consensus       176 yn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M  234 (883)
                      ...++..+...|++++|..+...+.... +-|...|..+|.+|...|+...|.++|+.+
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            3344444445555555555555544422 123345555555555555555555555444

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=90.98  E-value=29  Score=38.39  Aligned_cols=132  Identities=16%  Similarity=0.215  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cC----ChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCC-
Q 002761          189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCK--AG----DHSNALEIAYEMEAAGR---MATTFHFNHLLSCQATCGI-  258 (883)
Q Consensus       189 ~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k--~g----~~eeA~~lf~~M~~~G~---~Pd~~tyn~LI~~y~k~G~-  258 (883)
                      +.+...+++.|.+.|++.+..+|-+..-....  ..    ...+|..+|+.|++.-.   .++..++.+|+.+  .... 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            44566677888888888777666553222222  22    35678888888887642   3566777777666  3333 


Q ss_pred             ---HHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHH
Q 002761          259 ---PEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL  326 (883)
Q Consensus       259 ---~e~A~~lf~~M~~g~~gi~p-d~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~L  326 (883)
                         .+.+..+|+.+.  +.|+.+ |..-+-+-|-+++..-..+.+..+.++++.+.+  .|+++....|..+
T Consensus       156 e~l~~~~E~~Y~~L~--~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~--~~~kik~~~yp~l  223 (297)
T PF13170_consen  156 EELAERMEQCYQKLA--DAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK--NGVKIKYMHYPTL  223 (297)
T ss_pred             HHHHHHHHHHHHHHH--HhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH--cCCccccccccHH
Confidence               355677777777  556655 344555555555555444456688889998888  6888777666543

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=90.80  E-value=31  Score=38.50  Aligned_cols=112  Identities=11%  Similarity=0.026  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHH
Q 002761          209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ  288 (883)
Q Consensus       209 ~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~  288 (883)
                      .+.+..|.-+...|+...|.++-.+.    -.|+..-|-..|.+|+..++|++-.++... +       ...+-|-.++.
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-------KsPIGyepFv~  245 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS-K-------KSPIGYEPFVE  245 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-------CCCCChHHHHH
Confidence            45666677788889988887775544    347888999999999999999887775433 2       23477888999


Q ss_pred             HHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002761          289 AYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ  347 (883)
Q Consensus       289 ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~  347 (883)
                      +|.+.|   ...+|..+...+            ++..-+..|.++|++.+|.+.-...+
T Consensus       246 ~~~~~~---~~~eA~~yI~k~------------~~~~rv~~y~~~~~~~~A~~~A~~~k  289 (319)
T PF04840_consen  246 ACLKYG---NKKEASKYIPKI------------PDEERVEMYLKCGDYKEAAQEAFKEK  289 (319)
T ss_pred             HHHHCC---CHHHHHHHHHhC------------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence            999999   555888776653            22456788899999999988765554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=90.32  E-value=4.8  Score=40.03  Aligned_cols=85  Identities=9%  Similarity=-0.067  Sum_probs=40.3

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 002761          150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALE  229 (883)
Q Consensus       150 ~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~  229 (883)
                      ...|++++|..+|..+....+..-.-|-.|-.++-..|++.+|...|........ -|...+-.+-.++...|+.+.|.+
T Consensus        46 y~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~~  124 (157)
T PRK15363         46 MEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAIK  124 (157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHH
Confidence            4445555555555555444322222344444455555555555555555444321 222444444455555555555555


Q ss_pred             HHHHHH
Q 002761          230 IAYEME  235 (883)
Q Consensus       230 lf~~M~  235 (883)
                      -|+...
T Consensus       125 aF~~Ai  130 (157)
T PRK15363        125 ALKAVV  130 (157)
T ss_pred             HHHHHH
Confidence            555444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=89.92  E-value=1.9  Score=35.77  Aligned_cols=60  Identities=15%  Similarity=0.185  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCC-CHHHHHHHHHHH
Q 002761          140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNK-YLEDANKVFLRG  199 (883)
Q Consensus       140 ~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G-~~eeA~~lf~~M  199 (883)
                      .+|..+-..+...|++++|...|.+.++........|..+-.+|.+.| ++++|...|++.
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a   64 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA   64 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            344444444444555555555555444443221114444444444444 344554444443

...

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=89.84  E-value=6.4  Score=44.94  Aligned_cols=130  Identities=15%  Similarity=0.200  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-chhCCCCCCCCHHHH-H
Q 002761          208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAG-RMATTFHFNHLLSCQATCGIPEVAFATFEN-MEYGEDYMKPDTETY-N  284 (883)
Q Consensus       208 ~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G-~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~-M~~g~~gi~pd~~ty-n  284 (883)
                      ...|...|++-.+..-++.|..+|-+..+.| +.+++..++++|..||. |+...|.++|+- |..     -||...| +
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-----f~d~~~y~~  470 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-----FPDSTLYKE  470 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-----CCCchHHHH
Confidence            3567777777777777788888888887777 56777788888877764 566677777763 331     3444333 3


Q ss_pred             HHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002761          285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN--VKTYALLVECFTKYCAVTEAIRHFRALQNY  349 (883)
Q Consensus       285 ~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd--~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~  349 (883)
                      -.+.-+...+   +-..|..+|+.-+.   .+.-+  ...|..+|+-=+..|++..+..+-+.|...
T Consensus       471 kyl~fLi~in---de~naraLFetsv~---r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~  531 (660)
T COG5107         471 KYLLFLIRIN---DEENARALFETSVE---RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL  531 (660)
T ss_pred             HHHHHHHHhC---cHHHHHHHHHHhHH---HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence            3445555556   44567777775554   33334  456777777777778777777766666543

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=89.82  E-value=8.1  Score=44.17  Aligned_cols=148  Identities=10%  Similarity=0.076  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 002761          139 HETLIALARLFGSKGLATKGLEILAAMEKIN-YDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY-DLMI  215 (883)
Q Consensus       139 ~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g-~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~ty-n~LI  215 (883)
                      ...|...|+...+..-++.|+.+|....+.| +.+++ +++++|.-|+. |+..-|.++|+--...  -||...| +-.+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl  473 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL  473 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence            4567777888888888888888888888888 56667 88888887764 5667788888654331  2555333 4566


Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 002761          216 AEDCKAGDHSNALEIAYEMEAAGRMAT--TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA  293 (883)
Q Consensus       216 ~a~~k~g~~eeA~~lf~~M~~~G~~Pd--~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~  293 (883)
                      .-+...++-+.|..+|+.-..+ +.-+  ...|-.+|+-=.+-|++..|..+=+.|..    +.|-..+-....+-|+-.
T Consensus       474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e----~~pQen~~evF~Sry~ik  548 (660)
T COG5107         474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE----LVPQENLIEVFTSRYAIK  548 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH----HcCcHhHHHHHHHHHhhh
Confidence            6677788888888888844322 1112  35788888888888888888777776663    245555555566666655


Q ss_pred             C
Q 002761          294 E  294 (883)
Q Consensus       294 G  294 (883)
                      .
T Consensus       549 ~  549 (660)
T COG5107         549 A  549 (660)
T ss_pred             c
Confidence            4

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=89.80  E-value=1.5  Score=35.96  Aligned_cols=56  Identities=16%  Similarity=0.096  Sum_probs=39.2

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 002761          180 VEELVRNKYLEDANKVFLRGAKGGLRA-TDEIYDLMIAEDCKAGDHSNALEIAYEMEAA  237 (883)
Q Consensus       180 I~~y~k~G~~eeA~~lf~~M~~~gi~p-d~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~  237 (883)
                      -..|.+.|++++|...|++..+..  | +...|..+-.++...|++++|...|++..+.
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345677778888888888777654  4 3466777777777778888888777777654

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=89.66  E-value=12  Score=35.83  Aligned_cols=82  Identities=15%  Similarity=0.045  Sum_probs=34.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 002761          145 LARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGD  223 (883)
Q Consensus       145 LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~  223 (883)
                      ++..+.+.+.......+++.+.+.+. .+. .+|.+|..|++.. .......+..      ..+......++..|-+.+.
T Consensus        13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l   84 (140)
T smart00299       13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL   84 (140)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence            34444444444444444444444432 222 4455555555432 1222222221      0122233334455555555


Q ss_pred             hHHHHHHHHHH
Q 002761          224 HSNALEIAYEM  234 (883)
Q Consensus       224 ~eeA~~lf~~M  234 (883)
                      ++++.-++..+
T Consensus        85 ~~~~~~l~~k~   95 (140)
T smart00299       85 YEEAVELYKKD   95 (140)
T ss_pred             HHHHHHHHHhh
Confidence            55555555443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=88.73  E-value=28  Score=35.94  Aligned_cols=181  Identities=12%  Similarity=0.048  Sum_probs=100.1

Q ss_pred             HHHHHCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 002761          181 EELVRNKYLEDANKVFLRGAKGGL--RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI  258 (883)
Q Consensus       181 ~~y~k~G~~eeA~~lf~~M~~~gi--~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~  258 (883)
                      ..+...|++.+|...|+.+...-.  +--....-.+..++.+.|+++.|...|+...+.-..-...-+...+.+.+....
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~   92 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ   92 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence            455678999999999999886421  111245667788888999999999999988765322222334444444332222


Q ss_pred             HHHHHHHHHHchhCCCCC---CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCC
Q 002761          259 PEVAFATFENMEYGEDYM---KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA  335 (883)
Q Consensus       259 ~e~A~~lf~~M~~g~~gi---~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~  335 (883)
                      .....     ..  ....   ..-...+..+|.-|-.+.   .+.+|...+..+...     .-.. --.+..-|.+.|.
T Consensus        93 ~~~~~-----~~--~~D~~~~~~A~~~~~~li~~yP~S~---y~~~A~~~l~~l~~~-----la~~-e~~ia~~Y~~~~~  156 (203)
T PF13525_consen   93 IPGIL-----RS--DRDQTSTRKAIEEFEELIKRYPNSE---YAEEAKKRLAELRNR-----LAEH-ELYIARFYYKRGK  156 (203)
T ss_dssp             HHHHH------T--T---HHHHHHHHHHHHHHHH-TTST---THHHHHHHHHHHHHH-----HHHH-HHHHHHHHHCTT-
T ss_pred             Cccch-----hc--ccChHHHHHHHHHHHHHHHHCcCch---HHHHHHHHHHHHHHH-----HHHH-HHHHHHHHHHccc
Confidence            11111     00  0000   001224455666666666   445555544444320     0001 1234567999999


Q ss_pred             HHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHH
Q 002761          336 VTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELL  383 (883)
Q Consensus       336 ~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~  383 (883)
                      +..|..-|+.+.+....+....      +..-.|+.+|-+.|..+.|.
T Consensus       157 y~aA~~r~~~v~~~yp~t~~~~------~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  157 YKAAIIRFQYVIENYPDTPAAE------EALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHHHHHHHHSTTSHHHH------HHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCchHH------HHHHHHHHHHHHhCChHHHH
Confidence            9999999999987654443221      14567889999999887544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=88.57  E-value=1.4  Score=37.74  Aligned_cols=59  Identities=15%  Similarity=0.077  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHH
Q 002761          175 AWLILVEELVRNKYLEDANKVFLRGAKG----GL-RAT-DEIYDLMIAEDCKAGDHSNALEIAYE  233 (883)
Q Consensus       175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~----gi-~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~  233 (883)
                      +|+.+-..|...|++++|+..|++..+.    |- .|+ ..+++.+-..|...|++++|++.+++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4455555555555555555555544321    10 011 23444444445555555555554443

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=88.12  E-value=5.9  Score=42.95  Aligned_cols=96  Identities=15%  Similarity=-0.018  Sum_probs=41.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCChh---HHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 002761          142 LIALARLFGSKGLATKGLEILAAMEKINYDIR---QAWLILVEELVRNKYLEDANKVFLRGAKGG--LRATDEIYDLMIA  216 (883)
Q Consensus       142 y~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pd---vtyn~LI~~y~k~G~~eeA~~lf~~M~~~g--i~pd~~tyn~LI~  216 (883)
                      |...+..+.+.|++++|...|..+++.-....   .++-.+-..|...|++++|...|..+...-  -......+-.+..
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            33333333334555555555555554432211   133344445555555555555555554321  0011122333333


Q ss_pred             HHHHcCChHHHHHHHHHHHHc
Q 002761          217 EDCKAGDHSNALEIAYEMEAA  237 (883)
Q Consensus       217 a~~k~g~~eeA~~lf~~M~~~  237 (883)
                      .+...|+.++|..+|+...+.
T Consensus       226 ~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            444555555555555555443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=88.04  E-value=24  Score=33.82  Aligned_cols=119  Identities=12%  Similarity=0.159  Sum_probs=67.8

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG  158 (883)
Q Consensus        79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A  158 (883)
                      +...+........++.+...+ ..+...+|.+|..|++.. ....++.+..      ..+.+....+++.|.+.+.++++
T Consensus        17 ~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~   88 (140)
T smart00299       17 FEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEEA   88 (140)
T ss_pred             HHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHHH
Confidence            334456677777777777666 356677778888877653 3344444432      12344455577777777777777


Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHC-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 002761          159 LEILAAMEKINYDIRQAWLILVEELVRN-KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDC  219 (883)
Q Consensus       159 ~~l~~~m~~~g~~pdvtyn~LI~~y~k~-G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~  219 (883)
                      .-++..+..        |...+..+... ++++.|.+.+.+-      -+...|..++..+.
T Consensus        89 ~~l~~k~~~--------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l  136 (140)
T smart00299       89 VELYKKDGN--------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL  136 (140)
T ss_pred             HHHHHhhcC--------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence            766655422        12222333333 6666666666551      24456666665554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=88.00  E-value=2.5  Score=35.10  Aligned_cols=65  Identities=17%  Similarity=0.193  Sum_probs=49.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 002761          103 GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG-LATKGLEILAAMEKI  168 (883)
Q Consensus       103 d~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g-~~~~A~~l~~~m~~~  168 (883)
                      +..+|..+-..+.+.|++++|+..|.+..... +-+...|..+-.+|.+.| ++++|.+.+.+.++.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            45677788888888888888888888877753 224556777777888888 688888888877664

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=87.81  E-value=12  Score=43.20  Aligned_cols=66  Identities=18%  Similarity=0.118  Sum_probs=54.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002761          277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV----KTYALLVECFTKYCAVTEAIRHFRALQNY  349 (883)
Q Consensus       277 ~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~----~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~  349 (883)
                      +.+...|+.+-.+|.+.|   +.++|+..|++.++    +.|+.    .+|..+-.+|.+.|++++|...++...+.
T Consensus        72 P~~a~a~~NLG~AL~~lG---ryeEAIa~f~rALe----L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKG---RVKDALAQFETALE----LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh----hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            346778899999999999   56699999999876    66774    35888888999999999999999988763

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=87.68  E-value=28  Score=38.44  Aligned_cols=154  Identities=10%  Similarity=0.071  Sum_probs=84.8

Q ss_pred             CCCHHHHHHHHHHHHhCCChhhH--------HHHHHcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHH
Q 002761           20 QTGVVPIRSAMSSPEKKTRRKKQ--------QRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDV   91 (883)
Q Consensus        20 ~pd~~syn~LI~~~~k~g~~~~A--------~~M~~~gv~Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~l   91 (883)
                      .....++.+++..-..  .++++        ..|.+.|+.-+.++|-+..-.+........-         -....|..+
T Consensus        57 ~~~~~~la~~l~~~~~--~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~---------~~~~ra~~i  125 (297)
T PF13170_consen   57 GNHRFILAALLDISFE--DPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYD---------EIIQRAKEI  125 (297)
T ss_pred             ccHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHH---------HHHHHHHHH
Confidence            4444555555544433  46666        5666678888888777644443331111111         223678889


Q ss_pred             HHHHHHCC---CCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CC--HHHHHH
Q 002761           92 IYDMIAAG---LSPGPRSFHGLVVAYTLNGD----HEGAMHSLKRELSAGVRPLHE-TLIALARLFGSK-GL--ATKGLE  160 (883)
Q Consensus        92 f~~M~~~G---~~pd~~tyn~LI~a~~~~g~----~~~A~~lf~~M~~~Gi~Pd~~-ty~~LI~a~~~~-g~--~~~A~~  160 (883)
                      |+.|++..   -.++-..+.+|+..  ...+    .+.+..+|+.+...|+..+.. -+.+-+-+++.. ..  +..+..
T Consensus       126 y~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~  203 (297)
T PF13170_consen  126 YKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIE  203 (297)
T ss_pred             HHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHH
Confidence            99998764   23455667777655  3333    345667777777777765433 222333333322 22  346677


Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHC
Q 002761          161 ILAAMEKINYDIRQAWLILVEELVRN  186 (883)
Q Consensus       161 l~~~m~~~g~~pdvtyn~LI~~y~k~  186 (883)
                      ++..+.+.|+.+...+-..+..++-.
T Consensus       204 l~~~l~~~~~kik~~~yp~lGlLall  229 (297)
T PF13170_consen  204 LYNALKKNGVKIKYMHYPTLGLLALL  229 (297)
T ss_pred             HHHHHHHcCCccccccccHHHHHHhc
Confidence            77778887777665333334444433

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=87.19  E-value=28  Score=35.03  Aligned_cols=136  Identities=14%  Similarity=0.081  Sum_probs=89.0

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002761           89 NDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKI  168 (883)
Q Consensus        89 ~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~  168 (883)
                      .+.++.+.+.|++|+...|..+|..+.+.|++..    +..+...++-||.......+-.+..  ....+.++=-.|.++
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR   87 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR   87 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence            3455566678888999999999999999988644    4455667777777766655544433  334444444444432


Q ss_pred             -CCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761          169 -NYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG  238 (883)
Q Consensus       169 -g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G  238 (883)
                       +    ..+..++..+...|++-+|.++.+....    .+.+....++.+..+.++...=..+|+-...++
T Consensus        88 L~----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n  150 (167)
T PF07035_consen   88 LG----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN  150 (167)
T ss_pred             hh----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence             2    2566778888889999999988877533    222334567777777777666666666655543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=87.08  E-value=9.5  Score=41.40  Aligned_cols=95  Identities=9%  Similarity=-0.055  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--CCHHHHHH
Q 002761          175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATD----EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM--ATTFHFNH  248 (883)
Q Consensus       175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~----~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~--Pd~~tyn~  248 (883)
                      .|+..+..+.+.|++++|...|+.+.+.-  |+.    ..+--+-..|...|++++|...|..+.+.-..  .....+-.
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            77777777777889999999999888743  443    46667788888899999999999988864211  12233334


Q ss_pred             HHHHHHHcCCHHHHHHHHHHchh
Q 002761          249 LLSCQATCGIPEVAFATFENMEY  271 (883)
Q Consensus       249 LI~~y~k~G~~e~A~~lf~~M~~  271 (883)
                      +...|...|+.+.|..+|+.+..
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH
Confidence            45567788999999999988773

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.15  E-value=29  Score=40.65  Aligned_cols=58  Identities=10%  Similarity=0.067  Sum_probs=31.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761          319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN  393 (883)
Q Consensus       319 d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~G  393 (883)
                      +...|..|-......|+++-|...|.....                 |+.|.-.|.-.|+.+.-.++.+.-...|
T Consensus       346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~  403 (443)
T PF04053_consen  346 DPEKWKQLGDEALRQGNIELAEECYQKAKD-----------------FSGLLLLYSSTGDREKLSKLAKIAEERG  403 (443)
T ss_dssp             THHHHHHHHHHHHHTTBHHHHHHHHHHCT------------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----------------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            445555555555566666666665555543                 4555555555666555555555555454

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=85.73  E-value=58  Score=35.44  Aligned_cols=166  Identities=16%  Similarity=0.132  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002761          175 AWLILVEELVRNKYLE---DANKVFLRGAKGGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL  250 (883)
Q Consensus       175 tyn~LI~~y~k~G~~e---eA~~lf~~M~~~gi~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI  250 (883)
                      +...|+.+|...+..+   +|..+.+.+....  |+ ...|-.-|..+.+.++.+.+.+++..|...- .-....+..++
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l  162 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence            5556666666666544   3444555554322  22 3444444555555777777777777777652 11223344334


Q ss_pred             HHH---HHcCCHHHHHHHHHHchhCCCCCCCCHHHH--HHHHHH---HHHcC---CcccHHHHHHHHHHhHhccCCCCCC
Q 002761          251 SCQ---ATCGIPEVAFATFENMEYGEDYMKPDTETY--NCVIQA---YTRAE---SYDRVQDVAELLGMMVEDHKRLQPN  319 (883)
Q Consensus       251 ~~y---~k~G~~e~A~~lf~~M~~g~~gi~pd~~ty--n~LI~a---y~~~G---~~d~~~eAl~lf~~M~~~~~gi~Pd  319 (883)
                      ..+   ..... ..|...++.+.  ...+.|....|  ..++.-   ..+.+   .-++++.+.+++....+. .+-+.+
T Consensus       163 ~~i~~l~~~~~-~~a~~~ld~~l--~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~-~~~~ls  238 (278)
T PF08631_consen  163 HHIKQLAEKSP-ELAAFCLDYLL--LNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHS-LGKQLS  238 (278)
T ss_pred             HHHHHHHhhCc-HHHHHHHHHHH--HHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHH-hcCCCC
Confidence            333   33322 34444444443  22223322101  111111   11111   111244555555543321 233334


Q ss_pred             HHHHHHHH-------HHHHHcCCHHHHHHHHHHHH
Q 002761          320 VKTYALLV-------ECFTKYCAVTEAIRHFRALQ  347 (883)
Q Consensus       320 ~~Ty~~LI-------~a~~k~G~~eeA~~lf~~M~  347 (883)
                      ..+-.++.       ..+.+.++++.|.+.|+.-.
T Consensus       239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            44433332       35678899999999987543

It is also involved in sporulation [].

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=85.16  E-value=11  Score=43.69  Aligned_cols=64  Identities=13%  Similarity=0.076  Sum_probs=37.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002761          103 GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH----ETLIALARLFGSKGLATKGLEILAAMEKI  168 (883)
Q Consensus       103 d~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~----~ty~~LI~a~~~~g~~~~A~~l~~~m~~~  168 (883)
                      +...|+.+-.+|.+.|++++|+..|++....  .|+.    .+|..+-.+|...|++++|...+++.++.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4556666666666666666666666665443  4442    24566666666666666666666665553

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=84.99  E-value=2.9  Score=35.63  Aligned_cols=60  Identities=18%  Similarity=0.121  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-Chh-H-HHHHHHHHHHHCCCHHHHHHHHHHHH
Q 002761          141 TLIALARLFGSKGLATKGLEILAAMEKI----NY-DIR-Q-AWLILVEELVRNKYLEDANKVFLRGA  200 (883)
Q Consensus       141 ty~~LI~a~~~~g~~~~A~~l~~~m~~~----g~-~pd-v-tyn~LI~~y~k~G~~eeA~~lf~~M~  200 (883)
                      +|+.+-..|...|++++|...|++..+.    |- .|. . +++.+-..|...|++++|...|++-.
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4555555666666666666666555432    11 122 2 67777777888888888887777643

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=84.81  E-value=5.5  Score=33.30  Aligned_cols=21  Identities=19%  Similarity=0.056  Sum_probs=8.0

Q ss_pred             HHHHHHHCCCHHHHHHHHHHH
Q 002761          179 LVEELVRNKYLEDANKVFLRG  199 (883)
Q Consensus       179 LI~~y~k~G~~eeA~~lf~~M  199 (883)
                      .-..|.+.|++.+|...|+..
T Consensus        35 ~a~~~~~~g~~~~A~~~l~~~   55 (73)
T PF13371_consen   35 RARCLFQLGRYEEALEDLERA   55 (73)
T ss_pred             HHHHHHHhccHHHHHHHHHHH
Confidence            333333333333333333333

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=84.04  E-value=34  Score=40.01  Aligned_cols=28  Identities=14%  Similarity=0.100  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761          243 TFHFNHLLSCQATCGIPEVAFATFENME  270 (883)
Q Consensus       243 ~~tyn~LI~~y~k~G~~e~A~~lf~~M~  270 (883)
                      ...|..|-+...++|+++-|.+.|.+..
T Consensus       347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~  374 (443)
T PF04053_consen  347 PEKWKQLGDEALRQGNIELAEECYQKAK  374 (443)
T ss_dssp             HHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence            3344444444444444444444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=83.91  E-value=39  Score=36.96  Aligned_cols=98  Identities=16%  Similarity=0.067  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHH---CCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 002761          138 LHETLIALARLFGSKGLATKGLEILAAMEKI-NYDIRQAWLILVEELVR---NKYLEDANKVFLRGAKGGLRATDEIYDL  213 (883)
Q Consensus       138 d~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~-g~~pdvtyn~LI~~y~k---~G~~eeA~~lf~~M~~~gi~pd~~tyn~  213 (883)
                      |...|-.|-..|...|+...|..-|....+. |-.|++ +..+-.++..   .....++..+|+++..... -|+.+-.-
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~-~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~l  232 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI-LLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALSL  232 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHHH
Confidence            4556666666666666666666666665554 222222 2222222111   1223456666666655321 22334444


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHc
Q 002761          214 MIAEDCKAGDHSNALEIAYEMEAA  237 (883)
Q Consensus       214 LI~a~~k~g~~eeA~~lf~~M~~~  237 (883)
                      |-.++...|++.+|...|+.|.+.
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhc
Confidence            445566666666666666666654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=83.41  E-value=9.1  Score=41.76  Aligned_cols=95  Identities=19%  Similarity=0.199  Sum_probs=47.0

Q ss_pred             HHCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHH
Q 002761          184 VRNKYLEDANKVFLRGAKGGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEV  261 (883)
Q Consensus       184 ~k~G~~eeA~~lf~~M~~~gi~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~P-d~~tyn~LI~~y~k~G~~e~  261 (883)
                      .+.+++.+|...|.+.++  +.|+ .+-|..=-.+|++.|.++.|.+=-+....-  .| -..+|..|-.+|...|++++
T Consensus        92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence            345555555555555554  2232 344444555555555555555444433332  12 13455555555656666666


Q ss_pred             HHHHHHHchhCCCCCCCCHHHHHHH
Q 002761          262 AFATFENMEYGEDYMKPDTETYNCV  286 (883)
Q Consensus       262 A~~lf~~M~~g~~gi~pd~~tyn~L  286 (883)
                      |.+.|.+..    .+.|+-.+|-+=
T Consensus       168 A~~aykKaL----eldP~Ne~~K~n  188 (304)
T KOG0553|consen  168 AIEAYKKAL----ELDPDNESYKSN  188 (304)
T ss_pred             HHHHHHhhh----ccCCCcHHHHHH
Confidence            655555443    245555555443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=82.90  E-value=77  Score=34.53  Aligned_cols=223  Identities=13%  Similarity=0.042  Sum_probs=129.8

Q ss_pred             HhcCChHHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--------CCCCCH----
Q 002761           80 ARNRDAPRVNDVIYDMIAAG--LSPGP------RSFHGLVVAYTLNGDHEGAMHSLKRELSA--------GVRPLH----  139 (883)
Q Consensus        80 ~k~G~~~~A~~lf~~M~~~G--~~pd~------~tyn~LI~a~~~~g~~~~A~~lf~~M~~~--------Gi~Pd~----  139 (883)
                      .+.|+++.|...+.+....-  ..|+.      ..||.-...+.+..+++.|...+++-...        ...|+.    
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            46688888888888877532  23432      35777666666665888877776654322        234443    


Q ss_pred             -HHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 002761          140 -ETLIALARLFGSKGLAT---KGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI  215 (883)
Q Consensus       140 -~ty~~LI~a~~~~g~~~---~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI  215 (883)
                       .++..++.+|...+..+   +|..+++.+.+....+-.++-.-+..+.+.++.+.+.+++.+|...- .-....+..++
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l  162 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence             35677788888777644   56667777755544433356566677777999999999999998752 21335555555


Q ss_pred             HHH---HHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHH---HHHc------CCHHHHHHHHHHchhCCCCCCCCHH
Q 002761          216 AED---CKAGDHSNALEIAYEMEAAGRMATTF--HFNHLLSC---QATC------GIPEVAFATFENMEYGEDYMKPDTE  281 (883)
Q Consensus       216 ~a~---~k~g~~eeA~~lf~~M~~~G~~Pd~~--tyn~LI~~---y~k~------G~~e~A~~lf~~M~~g~~gi~pd~~  281 (883)
                      ..+   ... ....|...+..+....+.|...  .=-.++.-   ..+.      .+++....+++.+.+ ..+-+.+..
T Consensus       163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~-~~~~~ls~~  240 (278)
T PF08631_consen  163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEH-SLGKQLSAE  240 (278)
T ss_pred             HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHH-HhcCCCCHH
Confidence            555   333 3456777777777666666553  11112211   1121      125666666775442 122233444


Q ss_pred             HHHHHHH-------HHHHcCCcccHHHHHHHHHH
Q 002761          282 TYNCVIQ-------AYTRAESYDRVQDVAELLGM  308 (883)
Q Consensus       282 tyn~LI~-------ay~~~G~~d~~~eAl~lf~~  308 (883)
                      +-++++.       .+.+.+   +..+|.+.|+-
T Consensus       241 ~~~a~~~LLW~~~~~~~~~k---~y~~A~~w~~~  271 (278)
T PF08631_consen  241 AASAIHTLLWNKGKKHYKAK---NYDEAIEWYEL  271 (278)
T ss_pred             HHHHHHHHHHHHHHHHHhhc---CHHHHHHHHHH
Confidence            4333332       344455   34478777764

It is also involved in sporulation [].

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=82.58  E-value=5.4  Score=33.35  Aligned_cols=57  Identities=25%  Similarity=0.184  Sum_probs=32.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 002761          113 AYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINY  170 (883)
Q Consensus       113 a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~  170 (883)
                      .|.+.+++++|.++++.+...+. .+...+...-..+.+.|++.+|...|....+.+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            45566666666666666655421 1444455555566666666666666666665543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=81.87  E-value=38  Score=34.38  Aligned_cols=94  Identities=17%  Similarity=0.026  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCC----HHH
Q 002761          175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATD--EIYDLMIAEDCKAGDHSNALEIAYEMEAA---GRMAT----TFH  245 (883)
Q Consensus       175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~--~tyn~LI~a~~k~g~~eeA~~lf~~M~~~---G~~Pd----~~t  245 (883)
                      .+..+.+-|++.|+.+.|.+.|.++.+....+..  ..+-.+|....-.+++..+.....+....   |-.++    ..+
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            7778888888888888888888888775544443  45667777777788888777776665432   21111    122


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHch
Q 002761          246 FNHLLSCQATCGIPEVAFATFENME  270 (883)
Q Consensus       246 yn~LI~~y~k~G~~e~A~~lf~~M~  270 (883)
                      |..|.  +...+++..|-++|-...
T Consensus       118 ~~gL~--~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  118 YEGLA--NLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHH--HHHhchHHHHHHHHHccC
Confidence            22222  224578888888887665

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases

Probab=81.82  E-value=0.42  Score=45.10  Aligned_cols=47  Identities=21%  Similarity=0.273  Sum_probs=38.1

Q ss_pred             cchHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhhchhHHHH
Q 002761          531 AASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVD  593 (883)
Q Consensus       531 g~S~~ev~~l~~ef~~~g~~~~~~~~~l~~~l~~~~~~~~~~G~~lyvp~~~~~~~~vdee~~  593 (883)
                      ||||+++    |.|.+++..||++         ++...+...|   |+|.++.+.++++++.+
T Consensus         2 ~~~w~~~----h~F~sgd~shp~~---------~~~~~~~~~~---~~~~~~~~~~~~~~e~~   48 (116)
T PF14432_consen    2 GCSWIEV----HSFVSGDRSHPQS---------ELINKMKEEG---YVPDTKEVGHDVDEEEK   48 (116)
T ss_pred             CCCccce----EEEEeCCCcCccH---------HHHHHHHHcC---CcchhhhhCCCchhhhh
Confidence            7999998    9999999999977         3444556689   99999999888877644

>PHA02875 ankyrin repeat protein; Provisional

Probab=81.28  E-value=21  Score=40.95  Aligned_cols=211  Identities=10%  Similarity=-0.043  Sum_probs=112.1

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh
Q 002761           76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRS--FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE--TLIALARLFGS  151 (883)
Q Consensus        76 L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~t--yn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~--ty~~LI~a~~~  151 (883)
                      |+..++.|+++.+..++    +.|..|+...  ..+.+...++.|+.+-    .+.+.+.|..|+..  ...+.+...+.
T Consensus         6 L~~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~   77 (413)
T PHA02875          6 LCDAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVE   77 (413)
T ss_pred             HHHHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHH
Confidence            44556677776655554    4576666533  3455566677788753    34455667666543  12344556667


Q ss_pred             cCCHHHHHHHHHHHHHcCCChhH----HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCChH
Q 002761          152 KGLATKGLEILAAMEKINYDIRQ----AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI--YDLMIAEDCKAGDHS  225 (883)
Q Consensus       152 ~g~~~~A~~l~~~m~~~g~~pdv----tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~t--yn~LI~a~~k~g~~e  225 (883)
                      .|+.+.+..++    +.|...+.    .-.+.+...+..|+.+    +++.+.+.|..|+...  -.+.+...+..|+.+
T Consensus        78 ~g~~~~v~~Ll----~~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~  149 (413)
T PHA02875         78 EGDVKAVEELL----DLGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK  149 (413)
T ss_pred             CCCHHHHHHHH----HcCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            88877655554    34432211    1124445556677764    4444455566655421  224555666777766


Q ss_pred             HHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHH---HHHHHHHHHHcCCcccHH
Q 002761          226 NALEIAYEMEAAGRMATTFH--FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET---YNCVIQAYTRAESYDRVQ  300 (883)
Q Consensus       226 eA~~lf~~M~~~G~~Pd~~t--yn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~t---yn~LI~ay~~~G~~d~~~  300 (883)
                      -+..+    .+.|..++...  ..+.+...+..|+.+-+..+++      .|..++...   .++++..-+..|+.+   
T Consensus       150 ~v~~L----l~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~------~ga~~n~~~~~~~~t~l~~A~~~~~~~---  216 (413)
T PHA02875        150 GIELL----IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLD------SGANIDYFGKNGCVAALCYAIENNKID---  216 (413)
T ss_pred             HHHHH----HhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh------CCCCCCcCCCCCCchHHHHHHHcCCHH---
Confidence            54444    45565444321  2234455567788776655544      333444332   124455445666432   


Q ss_pred             HHHHHHHHhHhccCCCCCCHH
Q 002761          301 DVAELLGMMVEDHKRLQPNVK  321 (883)
Q Consensus       301 eAl~lf~~M~~~~~gi~Pd~~  321 (883)
                          +.+-+.+  .|..|+..
T Consensus       217 ----iv~~Ll~--~gad~n~~  231 (413)
T PHA02875        217 ----IVRLFIK--RGADCNIM  231 (413)
T ss_pred             ----HHHHHHH--CCcCcchH
Confidence                3444555  58877754

>PRK10635 bacterioferritin; Provisional

Probab=80.67  E-value=1.7  Score=43.44  Aligned_cols=81  Identities=17%  Similarity=0.222  Sum_probs=55.8

Q ss_pred             HHhhhhccc----hhhhhhcCCCCCchhhHHHHHHHHHHHHHHHhcCCcCccchHHHHHHHHhcCCcHHHHHHHhhhccc
Q 002761          745 TIADAWGWT----WEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSL  820 (883)
Q Consensus       745 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  820 (883)
                      ...+-||+.    |.+.-         -.-|.+=|-++..+++.|||+|++.+..-     ++.  ......+|+....+
T Consensus        30 ~~~~~~G~~~la~~~~~e---------a~eEm~HA~~l~eRIl~LgG~P~~~~~~~-----~~~--g~~v~eml~~dl~~   93 (158)
T PRK10635         30 RMFKNWGLMRLNDVEYHE---------SIDEMKHADKYIERILFLEGIPNLQDLGK-----LNI--GEDVEEMLRSDLRL   93 (158)
T ss_pred             HHHHcCCcHHHHHHHHHH---------HHHHHHHHHHHHHHHHHcCCCCCCCCCCC-----CCC--CCCHHHHHHHHHHH
Confidence            467889986    33322         23578889999999999999999988632     222  23455555554444


Q ss_pred             ccccCCccHHHHHHHhhccccc
Q 002761          821 GYVFGSPLYDEIISLCLDLGEL  842 (883)
Q Consensus       821 ~~~~~~~~~~~~~~~~~~~~~~  842 (883)
                      -+ -....|.++|.+|-..|..
T Consensus        94 E~-~ai~~y~e~i~~a~~~~D~  114 (158)
T PRK10635         94 EL-EGAKDLREAIAYADSVHDY  114 (158)
T ss_pred             HH-HHHHHHHHHHHHHHHcCCH
Confidence            33 4678999999999875543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	883
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-09
1zrj_A	50	E1B-55KDA-associated protein 5 isoform C; SAP doma	1e-05
2kvu_A	75	MKL/myocardin-like protein 1; SAP motif, DNA/RNA b	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.4 bits (161), Expect = 3e-11
 Identities = 69/570 (12%), Positives = 149/570 (26%), Gaps = 167/570 (29%)

Query: 245 HFNHL--------LSCQATCGIPEVAFATFENMEYGEDYMKP--DTETYNCVIQAYTRAE 294
           H +H+           +    + E AF    + +  +D  K     E  + +I +     
Sbjct: 3   HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62

Query: 295 SYDRVQDV-----AELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
              R+         E++   VE+   L+ N   Y  L+            +      + Y
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEE--VLRIN---YKFLMSPIKTEQRQPSMMT-----RMY 112

Query: 350 EGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRT 409
                 L+N+       ++      R    ++L +AL  + +  + V    ++ S K   
Sbjct: 113 IEQRDRLYNDNQVFAKYNV-----SRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGK-TW 165

Query: 410 LVSS----------------WI------------EPLQE-----EAELGYEIDYIARYIS 436
           +                   W+            E LQ+     +       D+ +    
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 437 EGGLTGERKR--WVPRRGKTPL-------DPDAVGFIYSNPMETSFKQRCLEDGKKYHRK 487
                    R     +  +  L       +  A           +F   C         K
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW---------NAFNLSC---------K 267

Query: 488 LLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKG-----------------PEQHVLK-- 528
           +L T + +        + + ++ ++     L                    P + VL   
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-VLTTN 326

Query: 529 PKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRI---------NRSRGRPL--- 576
           P+  S ++   +++ L       D  ++V   ++                R     L   
Sbjct: 327 PRRLS-IIAESIRDGLAT----WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 577 ----WVPP-------VEEEEEEVDEEVDELISRIKLEEGNTEFWKR------RFLGEGLN 619
                +P         +  + +V   V++L     +E+   E              +  N
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 620 GR--HDKAVE-------MDESELSDVLDDDVTDVEYVAKD-----EEADEEEEVEQAEPE 665
               H   V+        D  +L     D      Y         +  +  E +      
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-----YFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 666 SQDVDRVKEKLVEAKKPLQMIG--VQLLKD 693
             D   +++K+          G  +  L+ 
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 5e-10
 Identities = 82/597 (13%), Positives = 162/597 (27%), Gaps = 191/597 (31%)

Query: 5   LRTPFPFISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAA 64
           LR  + F+          + PI++    P   TR   +QR  + + D+ +    +V    
Sbjct: 87  LRINYKFL----------MSPIKTEQRQPSMMTRMYIEQR-DRLYNDNQVFAKYNVS--- 132

Query: 65  EQGLRLIFMEELMQHARN-RDAPRVNDVIYDMIAAG------------------------ 99
               RL    +L Q     R A  V  +I  ++ +G                        
Sbjct: 133 ----RLQPYLKLRQALLELRPAKNV--LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 100 LSPGPRSFHGLVVAY--TLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK 157
           L+    +    V+     L    +    S     S     +H     L RL  SK     
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-N 245

Query: 158 GLEILAAMEKINYDIRQAWL---------ILVEELVRNKYLEDA------NKVFLRGAKG 202
            L +L        +++ A           IL+    R K + D         + L     
Sbjct: 246 CLLVLL-------NVQNAKAWNAFNLSCKILL--TTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV- 261
            L   DE+  L+             L+   +                L  +     P   
Sbjct: 297 TL-TPDEVKSLL----------LKYLDCRPQD---------------LPREVLTTNPRRL 330

Query: 262 ---------AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
                      AT++N      +   + +    +I++          + + + L +    
Sbjct: 331 SIIAESIRDGLATWDN------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 313 HK-------RLQPNVKTY--ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG 363
                     +  +V      ++V    KY  V          +  +  T  +       
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV---------EKQPKESTISIP------ 429

Query: 364 DPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAE 423
              S+YL    +    +E   AL            R+++    Y    +   + L     
Sbjct: 430 ---SIYLELKVK----LENEYALH-----------RSIV--DHYNIPKTFDSDDLIPPYL 469

Query: 424 LGYEIDYIARYISEGGLTGE----RK-----RWVPRR-GKTPLDPDAVGFIYSNPMETSF 473
             Y   +I  ++            R      R++ ++        +A G I +       
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT------ 523

Query: 474 KQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPK 530
               L+  K Y   +               ++  Y R+   +   +   E++++  K
Sbjct: 524 ----LQQLKFYKPYICD-------------NDPKYERLVNAILDFLPKIEENLICSK 563

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-05
 Identities = 58/427 (13%), Positives = 124/427 (29%), Gaps = 141/427 (33%)

Query: 483 KYH-RKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPE-QHVL------------- 527
           +Y  + +L   +    A + +    D   V++  K ++   E  H++             
Sbjct: 15  QYQYKDILSVFE---DAFVDNF---DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 528 -----KPKAASKMVV------------SELKEELDAQGLPTD---GTRNVLYQRVQKARR 567
                K +   +  V            S +K E     + T      R+ LY   Q   +
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 568 INRSRGRPLWVPPVEEEEEEVDEE----------------VDELISRIKLEE--GNTEFW 609
            N SR +P     + +   E+                     ++    K++       FW
Sbjct: 129 YNVSRLQPYLK--LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 610 KRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEEADEEEEVEQAEPESQDV 669
               L        +  +EM +  L   +D + T                 + +      +
Sbjct: 187 ----LNLKNCNSPETVLEMLQK-LLYQIDPNWT--------------SRSDHSSNIKLRI 227

Query: 670 DRVKEKL------------------VEAKKPLQM--IGVQLL---KDSDQT-----TTTS 701
             ++ +L                  V+  K      +  ++L   +    T      TT+
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 702 KRSMKRSSRMVEDDDDED----WFPEDPFEAFKEMRKRKVFDVSDMYTIADA---WGWTW 754
             S+   S  +  D+ +     +    P +  +E+       +S    IA++      TW
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIRDGLATW 344

Query: 755 EREITNRPPQKWSQE--WEVELAIQIMLKVIELGGTPTIG-----DCAVIIRAAIRAPLP 807
           +          W      ++   I+  L V+E    P          + +   +  A +P
Sbjct: 345 DN---------WKHVNCDKLTTIIESSLNVLE----PAEYRKMFDRLS-VFPPS--AHIP 388

Query: 808 SAFLKIL 814
           +  L ++
Sbjct: 389 TILLSLI 395

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 6e-05
 Identities = 45/313 (14%), Positives = 96/313 (30%), Gaps = 54/313 (17%)

Query: 581 VEEEEEEV--DEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLD 638
           V++  + +   EE+D +     +   +      R     L     K  EM +  + +VL 
Sbjct: 38  VQDMPKSILSKEEIDHI-----IMSKDAVSGTLRLFWTLL----SKQEEMVQKFVEEVLR 88

Query: 639 DD----VTDVEYVAKDEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDS 694
            +    ++ ++   +         +EQ +    D     +  V   +P   +   LL+  
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 695 DQTTTT-------SKRSMKRSSRMVEDDDDEDWFPEDPFEAF-----KEMRKRKVFD-VS 741
                         K  +  +  +      +       F+ F            V + + 
Sbjct: 149 PAKNVLIDGVLGSGKTWV--ALDVCLSYKVQCKM---DFKIFWLNLKNCNSPETVLEMLQ 203

Query: 742 DMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAA 801
            +    D   WT   + ++    +     + EL   +  K  E        +C +++   
Sbjct: 204 KLLYQIDP-NWTSRSDHSSNIKLR-IHSIQAELRRLLKSKPYE--------NCLLVLLNV 253

Query: 802 IRAPLPSAFL---KIL------QKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADM 852
             A   +AF    KIL      Q T  L     + +  +  S+ L   E+ + +    D 
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 853 ETTGIAVPDQTLD 865
               +  P + L 
Sbjct: 314 RPQDL--PREVLT 324

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 60.6 bits (145), Expect = 2e-09
 Identities = 48/342 (14%), Positives = 94/342 (27%), Gaps = 40/342 (11%)

Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTR 292
              A              C        +A           +       + YN V+  + R
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177

Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 352
             ++  +     +L M+ +    L P++ +YA  ++C  +       I            
Sbjct: 178 QGAFKELV---YVLFMVKDA--GLTPDLLSYAAALQCMGRQDQDAGTIE----------- 221

Query: 353 TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVS 412
            + L      G  L     A+         +       K    +PP+        + L  
Sbjct: 222 -RCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280

Query: 413 SWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETS 472
            + +  +      +      + + E  L  E    V                    + + 
Sbjct: 281 VYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRV-------------------CVVSV 321

Query: 473 FKQRCLEDGKKYHRKLLRTLQNEGPAVLGDV--SESDYVRVEERLKKLIKGPEQHVLKPK 530
            K        K+ RK L+TL+++    L        + +  E    +    P   +L  +
Sbjct: 322 EKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDER 381

Query: 531 AASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSR 572
              +M++  L+  L AQG         L  R      + R R
Sbjct: 382 EVVRMLLQVLQ-ALPAQGESFTTLARELSARTFSRHVVQRQR 422

>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1 Length = 50

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 533 SKMVVSELKEELDAQGLPTDGTRNVLYQRVQKA 565
            ++ V+EL+EEL  +GL T G +  L +R+Q A
Sbjct: 11  RRLKVNELREELQRRGLDTRGLKAELAERLQAA 43

>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A Length = 75

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 15/51 (29%), Positives = 23/51 (45%)

Query: 529 PKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVP 579
           P     M V+ELK+EL  + LP  GT+  L +R++  +            P
Sbjct: 23  PANLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQISPVPGAPKAP 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	883
d1zrja1	37	a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucle	8e-07
d1h1js_	44	a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Bak	1e-05
d1jeqa1	51	a.140.2.1 (A:559-609) DNA binding C-terminal domai	3e-04
d2ez9a1	183	c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacill	0.003

>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: Heterogeneous nuclear ribonucleoprotein U-like protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (105), Expect = 8e-07
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 533 SKMVVSELKEELDAQGLPTDGTRNVLYQRVQKA 565
            ++ V+EL+EEL  +GL T G +  L +R+Q A
Sbjct: 4   RRLKVNELREELQRRGLDTRGLKAELAERLQAA 36

>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 44

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: S/mar DNA-binding protein Tho1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 533 SKMVVSELKEELDAQGLPTDGTRNVLYQRVQKA 565
           S + V +LK+ L  + L   G +N L QR+ K 
Sbjct: 6   SSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKD 38

>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: DNA binding C-terminal domain of ku70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 533 SKMVVSELKEELDAQGLPTDGTRNVLYQRVQK 564
            K  V  LKE   A GL +   +  L + + K
Sbjct: 16  GKFTVPMLKEACRAYGLKSGLKKQELLEALTK 47

>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Length = 183

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 17/142 (11%), Positives = 44/142 (30%), Gaps = 1/142 (0%)

Query: 663 EPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFP 722
           EP+ Q V R+ + L+ A++PL   G+   K   +    SK                    
Sbjct: 14  EPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVADRY 73

Query: 723 EDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKV 782
                +   + ++   +      +    G  +     ++  +      ++++    + K 
Sbjct: 74  PAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSKAFKNTRYFLQIDIDPAKLGKR 133

Query: 783 IELGGTPTIGDCAVIIRAAIRA 804
            +      + D    + A +  
Sbjct: 134 HKT-DIAVLADAQKTLAAILAQ 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	883
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.77
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.77
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.38
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.33
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.05
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.94
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.86
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.83
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.78
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.5
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.42
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.38
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.35
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.91
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.57
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.54
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.52
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.4
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.31
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.76
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.63
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.28
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	95.93
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.83
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	95.71
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	94.66
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	93.59
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	92.88
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	92.86
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	92.02
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	92.0
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	90.93
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	90.71
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	90.63
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	85.57
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	84.69

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.7e-12  Score=99.18  Aligned_cols=358  Identities=11%  Similarity=0.021  Sum_probs=184.6

Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             99259937999999999988999999999999999998599899999999999889999999999999999906997999
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG  158 (883)
Q Consensus        79 ~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~LI~ay~~~g~~eeA~~ll~~M~~~Gi~Pd~~ty~~Li~a~~~~g~~~~A  158 (883)
                      +.+.|+++.|...++++.+.. +-+...+..+...|.+.|++++|...|++..... +-+..++..+...+.+.|++++|
T Consensus         9 ~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A   86 (388)
T d1w3ba_           9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA   86 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             998699999999999999868-9989999999999998699999999999999859-99899999999996420002222


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf             99999999829990499999999999889988999999997849999999999999999997399689999999999859
Q 002761          159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG  238 (883)
Q Consensus       159 ~~i~~~m~~~g~~pd~tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~~~g~~e~A~~lf~~M~~~g  238 (883)
                      ...+....+........+......+...+....+............ ................+....+...+.......
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (388)
T d1w3ba_          87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ  165 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             2222212112222222222222222222222222222111222222-222222222222211000135678888740258


Q ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             99999999999999998599799999999815189999999999999999999839946199999999995962699999
Q 002761          239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP  318 (883)
Q Consensus       239 i~pd~~tyn~LI~ay~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P  318 (883)
                       +-+...+..+...+...|..+.|...+.....  . -+.+...|..+...+...|.++   +|+..|......   ...
T Consensus       166 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~-~p~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~---~~~  235 (388)
T d1w3ba_         166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT--L-DPNFLDAYINLGNVLKEARIFD---RAVAAYLRALSL---SPN  235 (388)
T ss_dssp             -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHTTTCTT---HHHHHHHHHHHH---CTT
T ss_pred             -CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH--H-CCCCHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHH---HHH
T ss_conf             -61068998636301024719999999999998--4-9464999999715522005299---999999985777---554


Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             99999999999998299999999999987677997421366888837999999999839988999999999649999999
Q 002761          319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPP  398 (883)
Q Consensus       319 d~~Ty~~LI~a~~~~g~~eeA~~if~~m~~~~~~~~~~~~~~~~~dtY~~LI~~y~k~G~~eeA~~ll~~M~~~gi~i~p  398 (883)
                      +...+..+..++.+.|++++|...|+...+..+..         ++.|..+...|...|++++|...++......   |.
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~  303 (388)
T d1w3ba_         236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF---------PDAYCNLANALKEKGSVAEAEDCYNTALRLC---PT  303 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC---------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC---TT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC---CC
T ss_conf             79999999999998789999999999999849998---------9999999999997487999999998654048---73


Q ss_pred             CCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHHHHH
Q ss_conf             50001511999999986534876431460899999999079499999999984379999995310035607899999877
Q 002761          399 RAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCL  478 (883)
Q Consensus       399 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~vD~L~~~~~~~G~~~eA~~l~~~m~~~gi~Pd~~~~ty~~li~~~l~~~c~  478 (883)
                      +...                         ...++..+...|..++|..+++...  .+.|+.... +    ..+-..+..
T Consensus       304 ~~~~-------------------------~~~l~~~~~~~~~~~~A~~~~~~al--~~~p~~~~~-~----~~la~~~~~  351 (388)
T d1w3ba_         304 HADS-------------------------LNNLANIKREQGNIEEAVRLYRKAL--EVFPEFAAA-H----SNLASVLQQ  351 (388)
T ss_dssp             CHHH-------------------------HHHHHHHHHTTTCHHHHHHHHHHHT--TSCTTCHHH-H----HHHHHHHHT
T ss_pred             CCHH-------------------------HHHHHHHHHHCCCHHHHHHHHHHHH--HHCCCCHHH-H----HHHHHHHHH
T ss_conf             0010-------------------------1579999998789999999999999--868898999-9----999999998


Q ss_pred             HHCHHHHHHHHHHHH
Q ss_conf             542599999999983
Q 002761          479 EDGKKYHRKLLRTLQ  493 (883)
Q Consensus       479 ~~~~~~A~~Ll~~M~  493 (883)
                      .|+.++|...++...
T Consensus       352 ~g~~~~A~~~~~~al  366 (388)
T d1w3ba_         352 QGKLQEALMHYKEAI  366 (388)
T ss_dssp             TTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
T ss_conf             599999999999999

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.6e-12  Score=101.64  Aligned_cols=363  Identities=13%  Similarity=0.046  Sum_probs=262.3

Q ss_pred             HHHHHHHCCCHHHHHHHHHC--CCCCCHH-HHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             99888818994369999883--7998966-89999999990597679999999992599379999999999889999999
Q 002761           29 AMSSPEKKTRRKKQQRRQQK--HGDSLLS-TNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPR  105 (883)
Q Consensus        29 LI~~~~k~g~~~~A~~M~~~--gv~Pd~~-ty~~li~a~~~~~~~~~~~~L~~~~k~g~~~~A~~lf~~M~~~G~~pd~~  105 (883)
                      +...+.+.|++++|.+.++.  ...|+.. .+..+               ...+.+.|+++.|...|+...+.. +-+..
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~l---------------a~~~~~~~~~~~A~~~~~~al~~~-p~~~~   68 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLL---------------SSIHFQCRRLDRSAHFSTLAIKQN-PLLAE   68 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH---------------HHHHHHCCCHHHHHHHHHHHHHHC-CCCHH
T ss_conf             99999986999999999999998689989999999---------------999998699999999999999859-99899


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             99999999998599899999999999889999999999999999906997999999999998299904999999999998
Q 002761          106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVR  185 (883)
Q Consensus       106 tyn~LI~ay~~~g~~eeA~~ll~~M~~~Gi~Pd~~ty~~Li~a~~~~g~~~~A~~i~~~m~~~g~~pd~tyn~LI~~y~k  185 (883)
                      +|..+...|.+.|++++|...+......... +...................+...........................
T Consensus        69 a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (388)
T d1w3ba_          69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA  147 (388)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9999999964200022222222212112222-222222222222222222222222111222222222222222222211


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             89988999999997849999999999999999997399689999999999859999999999999999985997999999
Q 002761          186 NKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT  265 (883)
Q Consensus       186 ~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~~~g~~e~A~~lf~~M~~~gi~pd~~tyn~LI~ay~k~G~~e~A~~l  265 (883)
                      .+....+...+....... +-+...+..+...+...+.+++|...+....... +-+...+..+...|...|++++|...
T Consensus       148 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~  225 (388)
T d1w3ba_         148 LGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAA  225 (388)
T ss_dssp             TSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             000135678888740258-6106899863630102471999999999999849-46499999971552200529999999


Q ss_pred             HHHCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             99815189999999999999999999839946199999999995962699999-99999999999998299999999999
Q 002761          266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFR  344 (883)
Q Consensus       266 f~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a~~~~g~~eeA~~if~  344 (883)
                      |.....  . ...+...+..+...+.+.|   +.++|+..|++..+    +.| +..++..+..++...|++++|...+.
T Consensus       226 ~~~~~~--~-~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  295 (388)
T d1w3ba_         226 YLRALS--L-SPNHAVVHGNLACVYYEQG---LIDLAIDTYRRAIE----LQPHFPDAYCNLANALKEKGSVAEAEDCYN  295 (388)
T ss_dssp             HHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----TCSSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHH--H-HHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             998577--7-5547999999999999878---99999999999998----499989999999999997487999999998


Q ss_pred             HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98767799742136688883799999999983998899999999964999999950001511999999986534876431
Q 002761          345 ALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAEL  424 (883)
Q Consensus       345 ~m~~~~~~~~~~~~~~~~~dtY~~LI~~y~k~G~~eeA~~ll~~M~~~gi~i~p~~~~~~~~~~~Ll~~~~~~~~~~~~~  424 (883)
                      ..........         ..+..+...|.+.|++++|+..|++..+..   |.+...                      
T Consensus       296 ~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~----------------------  341 (388)
T d1w3ba_         296 TALRLCPTHA---------DSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAA----------------------  341 (388)
T ss_dssp             HHHHHCTTCH---------HHHHHHHHHHHTTTCHHHHHHHHHHHTTSC---TTCHHH----------------------
T ss_pred             HHHCCCCCCC---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHH----------------------
T ss_conf             6540487300---------101579999998789999999999999868---898999----------------------


Q ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf             46089999999907949999999998437999999
Q 002761          425 GYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPD  459 (883)
Q Consensus       425 g~~vD~L~~~~~~~G~~~eA~~l~~~m~~~gi~Pd  459 (883)
                         ...++..+...|..++|...++...  .+.|+
T Consensus       342 ---~~~la~~~~~~g~~~~A~~~~~~al--~l~P~  371 (388)
T d1w3ba_         342 ---HSNLASVLQQQGKLQEALMHYKEAI--RISPT  371 (388)
T ss_dssp             ---HHHHHHHHHTTTCCHHHHHHHHHHH--TTCTT
T ss_pred             ---HHHHHHHHHHCCCHHHHHHHHHHHH--HHCCC
T ss_conf             ---9999999998599999999999999--70999

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=8e-09  Score=75.91  Aligned_cols=222  Identities=13%  Similarity=0.027  Sum_probs=100.8

Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             99859989999999999988999999999999999990699799999999999829990499999999999889988999
Q 002761          114 YTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDAN  193 (883)
Q Consensus       114 y~~~g~~eeA~~ll~~M~~~Gi~Pd~~ty~~Li~a~~~~g~~~~A~~i~~~m~~~g~~pd~tyn~LI~~y~k~G~~eeA~  193 (883)
                      +.+.|++++|...|++..+.. +-+..+|..+..++...|+++.|...+.+..+........|..+...|...|++++|.
T Consensus        29 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  107 (323)
T d1fcha_          29 RLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQAC  107 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             998599999999999999868-9989999999999998377588999998510022222222222222222222112111


Q ss_pred             HHHHHHHHCCCCCCH----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHC
Q ss_conf             999997849999999----------------999999999997399689999999999859-999999999999999985
Q 002761          194 KVFLRGAKGGLRATD----------------EIYDLMIAEDCKAGDHSNALEIAYEMEAAG-RMATTFHFNHLLSCQATC  256 (883)
Q Consensus       194 ~lf~~M~~~gi~pd~----------------~tyn~LI~a~~~~g~~e~A~~lf~~M~~~g-i~pd~~tyn~LI~ay~k~  256 (883)
                      ..+.......  |+.                ......+..+...+.+.++...|....... -..+..++..+...+...
T Consensus       108 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~  185 (323)
T d1fcha_         108 EILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS  185 (323)
T ss_dssp             HHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHC--CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             0002677736--10678887664000000010000147888876579999999999999713012221110368888888


Q ss_pred             CCHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHCCC
Q ss_conf             997999999998151899999999999999999998399461999999999959626999999-9999999999998299
Q 002761          257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCA  335 (883)
Q Consensus       257 G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~~Ty~~LI~a~~~~g~  335 (883)
                      |+++.|...|+....  . .+-+...|..+...|...|   +..+|++.|.+..+    +.|+ ...+..+-.+|.+.|+
T Consensus       186 ~~~~~A~~~~~~al~--~-~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~g~  255 (323)
T d1fcha_         186 GEYDKAVDCFTAALS--V-RPNDYLLWNKLGATLANGN---QSEEAVAAYRRALE----LQPGYIRSRYNLGISCINLGA  255 (323)
T ss_dssp             TCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCCCCCC--C-CCCCCCCHHHHHHCCCCCC---CCHHHHHHHHHHHH----HHHCCHHHHHHHHHHHHHCCC
T ss_conf             877550021112222--2-2222111013330122111---10137888778998----843249999999999998789


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999876
Q 002761          336 VTEAIRHFRALQN  348 (883)
Q Consensus       336 ~eeA~~if~~m~~  348 (883)
                      +++|...|....+
T Consensus       256 ~~~A~~~~~~al~  268 (323)
T d1fcha_         256 HREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999997

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.8e-08  Score=70.49  Aligned_cols=225  Identities=11%  Similarity=-0.018  Sum_probs=90.7

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             99906997999999999998299904999999999998899889999999978499999999999999999973996899
Q 002761          148 LFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNA  227 (883)
Q Consensus       148 a~~~~g~~~~A~~i~~~m~~~g~~pd~tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~~~g~~e~A  227 (883)
                      .+.+.|++++|...|+.+.+.......+|..+...|...|++++|...|.+..+.. +-+...|..+...+...|++++|
T Consensus        28 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A  106 (323)
T d1fcha_          28 RRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQA  106 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99985999999999999998689989999999999998377588999998510022-22222222222222222211211


Q ss_pred             HHHHHHHHHCCCCC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             99999999859999--------------9999999999999859979999999981518999999999999999999983
Q 002761          228 LEIAYEMEAAGRMA--------------TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA  293 (883)
Q Consensus       228 ~~lf~~M~~~gi~p--------------d~~tyn~LI~ay~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~  293 (883)
                      ...+..........              +.......+..+...+...+|...|..... ...-..+...+..+...+...
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~-~~p~~~~~~~~~~l~~~~~~~  185 (323)
T d1fcha_         107 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR-LDPTSIDPDVQCGLGVLFNLS  185 (323)
T ss_dssp             HHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH-HSTTSCCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCHHHHHHHHHH
T ss_conf             1000267773610678887664000000010000147888876579999999999999-713012221110368888888


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             9946199999999995962699999-999999999999982999999999999876779974213668888379999999
Q 002761          294 ESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA  372 (883)
Q Consensus       294 G~~d~~~eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a~~~~g~~eeA~~if~~m~~~~~~~~~~~~~~~~~dtY~~LI~~  372 (883)
                      |   +.++|+..|.+...    ..| +...+..+-.++...|++++|...|....+..+.         .+..|..+...
T Consensus       186 ~---~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~lg~~  249 (323)
T d1fcha_         186 G---EYDKAVDCFTAALS----VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG---------YIRSRYNLGIS  249 (323)
T ss_dssp             T---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHH
T ss_pred             H---HHHHHHCCCCCCCC----CCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC---------CHHHHHHHHHH
T ss_conf             8---77550021112222----22222111013330122111101378887789988432---------49999999999


Q ss_pred             HHHCCCHHHHHHHHHHHH
Q ss_conf             998399889999999996
Q 002761          373 LCREGRIIELLEALEAMA  390 (883)
Q Consensus       373 y~k~G~~eeA~~ll~~M~  390 (883)
                      |.+.|++++|+..|++..
T Consensus       250 ~~~~g~~~~A~~~~~~al  267 (323)
T d1fcha_         250 CINLGAHREAVEHFLEAL  267 (323)
T ss_dssp             HHHHTCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHH
T ss_conf             998789999999999999

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=9e-07  Score=61.59  Aligned_cols=189  Identities=9%  Similarity=0.075  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             88999999997849999999999999999997399689999999999859999999999999999985997999999998
Q 002761          189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN  268 (883)
Q Consensus       189 ~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~~~g~~e~A~~lf~~M~~~gi~pd~~tyn~LI~ay~k~G~~e~A~~lf~~  268 (883)
                      .++|..+|+...+...+.+...|...+...-+.|..+.|..+|+.+..........+|...+..+.+.|..+.|..+|..
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~  159 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             59999999999987499879999999999986133899999999999871578699999999999982786889999999


Q ss_pred             CHHCCCCCCCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             151899999999999999999-9983994619999999999596269999999999999999998299999999999987
Q 002761          269 MEYGEDYMKPDTETYNCVIQA-YTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ  347 (883)
Q Consensus       269 M~~g~~gi~pd~~tyn~LI~a-y~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~~~g~~eeA~~if~~m~  347 (883)
                      ..  ... +.+...|...... +...|   ..+.|..+|..+..   ...-+...+...+..+...|+++.|..+|+...
T Consensus       160 al--~~~-~~~~~~~~~~a~~e~~~~~---~~~~a~~i~e~~l~---~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai  230 (308)
T d2onda1         160 AR--EDA-RTRHHVYVTAALMEYYCSK---DKSVAFKIFELGLK---KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL  230 (308)
T ss_dssp             HH--TST-TCCTHHHHHHHHHHHHTSC---CHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HH--HHC-CCCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99--808-8867999999999987655---77899999999998---610038899999999998698689999999999


Q ss_pred             HCCC-CCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf             6779-97421366888837999999999839988999999999649
Q 002761          348 NYEG-GTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD  392 (883)
Q Consensus       348 ~~~~-~~~~~~~~~~~~dtY~~LI~~y~k~G~~eeA~~ll~~M~~~  392 (883)
                      +... .+...      ...|...+.--...|+.+.+..++++|.+.
T Consensus       231 ~~~~~~~~~~------~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         231 TSGSLPPEKS------GEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HSSSSCGGGC------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHH------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             8278986899------999999999999849999999999999987

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=2.3e-06  Score=58.71  Aligned_cols=165  Identities=10%  Similarity=0.004  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q ss_conf             999999999988998899999999784999999999999999999739968999999999985999999999999999-9
Q 002761          175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC-Q  253 (883)
Q Consensus       175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~~~g~~e~A~~lf~~M~~~gi~pd~~tyn~LI~a-y  253 (883)
                      .|......+.+.|..+.|..+|+.+...........|...+..+.+.+..+.|..+|..+.+.+.. +...|...... +
T Consensus       101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~  179 (308)
T d2onda1         101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEY  179 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
T ss_conf             999999999861338999999999998715786999999999999827868899999999980888-6799999999998


Q ss_pred             HHCCCHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHH
Q ss_conf             985997999999998151899999999999999999998399461999999999959626999999--999999999999
Q 002761          254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN--VKTYALLVECFT  331 (883)
Q Consensus       254 ~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd--~~Ty~~LI~a~~  331 (883)
                      ...|+.+.|..+|+.+..   ..+.+...|...+..+...|   +...|..+|++.... .+..|.  ...|...+.--.
T Consensus       180 ~~~~~~~~a~~i~e~~l~---~~p~~~~~w~~y~~~~~~~g---~~~~aR~~fe~ai~~-~~~~~~~~~~iw~~~~~fE~  252 (308)
T d2onda1         180 YCSKDKSVAFKIFELGLK---KYGDIPEYVLAYIDYLSHLN---EDNNTRVLFERVLTS-GSLPPEKSGEIWARFLAFES  252 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHS-SSSCGGGCHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHH
T ss_conf             765577899999999998---61003889999999999869---868999999999982-78986899999999999999


Q ss_pred             HCCCHHHHHHHHHHHH
Q ss_conf             8299999999999987
Q 002761          332 KYCAVTEAIRHFRALQ  347 (883)
Q Consensus       332 ~~g~~eeA~~if~~m~  347 (883)
                      ..|+.+.+..+++.+.
T Consensus       253 ~~G~~~~~~~~~~r~~  268 (308)
T d2onda1         253 NIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHSCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHH
T ss_conf             8499999999999999

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.8e-06  Score=58.17  Aligned_cols=179  Identities=7%  Similarity=-0.072  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             999999999985998999999999998899999-999999999999069-979999999999982999049999999999
Q 002761          106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL-HETLIALARLFGSKG-LATKGLEILAAMEKINYDIRQAWLILVEEL  183 (883)
Q Consensus       106 tyn~LI~ay~~~g~~eeA~~ll~~M~~~Gi~Pd-~~ty~~Li~a~~~~g-~~~~A~~i~~~m~~~g~~pd~tyn~LI~~y  183 (883)
                      .|+.+-..+.+.+..++|+.++++....  .|+ ...|+....++...+ ++++|...+....+.......+|+.+...+
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999588669999999999987--98876999999999998376799999999999988774226898875888


Q ss_pred             HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC-----
Q ss_conf             988998899999999784999999999999999999739968999999999985999999999999999998599-----
Q 002761          184 VRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI-----  258 (883)
Q Consensus       184 ~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~~~g~~e~A~~lf~~M~~~gi~pd~~tyn~LI~ay~k~G~-----  258 (883)
                      .+.|+.++|...|..+.+.. +.+...|+.+...+...+++++|...++.+.+.... +...|+.+...+.+.+.     
T Consensus       123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~  200 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA  200 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HHHCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCCCHHH
T ss_conf             85053788998875554321-004688998877888888667899999999987974-4999988999998745631023


Q ss_pred             -HHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf             -799999999815189999999999999999999
Q 002761          259 -PEVAFATFENMEYGEDYMKPDTETYNCVIQAYT  291 (883)
Q Consensus       259 -~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~  291 (883)
                       +++|...+....+   -.+.+...|+.+...+.
T Consensus       201 ~~~~ai~~~~~al~---~~P~~~~~~~~l~~ll~  231 (315)
T d2h6fa1         201 VLEREVQYTLEMIK---LVPHNESAWNYLKGILQ  231 (315)
T ss_dssp             HHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHH
T ss_conf             54776799999998---49885699999877988

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=5.5e-06  Score=56.08  Aligned_cols=197  Identities=9%  Similarity=0.054  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             999999999906997999999999998299904999999999998899-8899999999784999999999999999999
Q 002761          141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKY-LEDANKVFLRGAKGGLRATDEIYDLMIAEDC  219 (883)
Q Consensus       141 ty~~Li~a~~~~g~~~~A~~i~~~m~~~g~~pd~tyn~LI~~y~k~G~-~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~  219 (883)
                      .|+.+-..+.+.+..++|..++..+++..+..-.+|+.....+...|. +++|...++...... +-+..+|+.+-..+.
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~  123 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE  123 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf             9999999999588669999999999987988769999999999983767999999999999887-742268988758888


Q ss_pred             HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHCCCCC--
Q ss_conf             739968999999999985999999999999999998599799999999815189999999999999999999839946--
Q 002761          220 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD--  297 (883)
Q Consensus       220 ~~g~~e~A~~lf~~M~~~gi~pd~~tyn~LI~ay~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d--  297 (883)
                      +.|++++|+..+..+..... -+...|+.+...+.+.|++++|...|+...+  . -+.+...|+.+...+.+.+...  
T Consensus       124 ~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~-~p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         124 WLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--E-DVRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHCCHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-CCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf             50537889988755543210-0468899887788888866789999999998--7-974499998899999874563102


Q ss_pred             -CHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             -199999999995962699999-99999999999998299999999999987
Q 002761          298 -RVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQ  347 (883)
Q Consensus       298 -~~~eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a~~~~g~~eeA~~if~~m~  347 (883)
                       ...+|+..+.....    ..| +...|..+...+.. ....++...+....
T Consensus       200 ~~~~~ai~~~~~al~----~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~  246 (315)
T d2h6fa1         200 AVLEREVQYTLEMIK----LVPHNESAWNYLKGILQD-RGLSKYPNLLNQLL  246 (315)
T ss_dssp             HHHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHH-CCHHHHHHHHHHHH
T ss_conf             354776799999998----498856999998779886-27188999999999

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=7.6e-06  Score=55.11  Aligned_cols=192  Identities=10%  Similarity=-0.029  Sum_probs=72.8

Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHH
Q ss_conf             9925993799999999998899999----99999999999985998999999999998899-999----99999999999
Q 002761           79 HARNRDAPRVNDVIYDMIAAGLSPG----PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV-RPL----HETLIALARLF  149 (883)
Q Consensus        79 ~~k~g~~~~A~~lf~~M~~~G~~pd----~~tyn~LI~ay~~~g~~eeA~~ll~~M~~~Gi-~Pd----~~ty~~Li~a~  149 (883)
                      +...|+++.|..++++.....-..+    ...++.+...|...|++++|...|.+...... .++    ...+..+...+
T Consensus        22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  101 (366)
T d1hz4a_          22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL  101 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             99888999999999999854868996799999999999999879999999999999999875011489999998887887


Q ss_pred             HHCCCHHHHHHHHHHHHHC----C--CCHH-H-HHHHHHHHHHHCCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHH
Q ss_conf             9069979999999999982----9--9904-9-99999999998899889999999978499----99999999999999
Q 002761          150 GSKGLATKGLEILAAMEKI----N--YDIR-Q-AWLILVEELVRNKYLEDANKVFLRGAKGG----LRATDEIYDLMIAE  217 (883)
Q Consensus       150 ~~~g~~~~A~~i~~~m~~~----g--~~pd-~-tyn~LI~~y~k~G~~eeA~~lf~~M~~~g----i~pd~~tyn~LI~a  217 (883)
                      ...+++..+...+......    .  ..+. . .+..+...+...|+++.+...+.......    .......+..+...
T Consensus       102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (366)
T d1hz4a_         102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC  181 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88888999998899999986750341256788899888789998145666689999988876630024689999888888


Q ss_pred             HHHCCCHHHHHHHHHHHHHCC--CCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHCH
Q ss_conf             997399689999999999859--999----99999999999998599799999999815
Q 002761          218 DCKAGDHSNALEIAYEMEAAG--RMA----TTFHFNHLLSCQATCGIPEVAFATFENME  270 (883)
Q Consensus       218 ~~~~g~~e~A~~lf~~M~~~g--i~p----d~~tyn~LI~ay~k~G~~e~A~~lf~~M~  270 (883)
                      +...+....+...+.......  ...    ....+..+...+...|+.+.|...+....
T Consensus       182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  240 (366)
T d1hz4a_         182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA  240 (366)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             87646678888999999999987311572699999999999986044898999999999

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=4.8e-05  Score=49.53  Aligned_cols=272  Identities=12%  Similarity=0.020  Sum_probs=166.1

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCCHH-H-HHHHH
Q ss_conf             99999985998999999999998899999----999999999999069979999999999982----99904-9-99999
Q 002761          110 LVVAYTLNGDHEGAMHSLKRELSAGVRPL----HETLIALARLFGSKGLATKGLEILAAMEKI----NYDIR-Q-AWLIL  179 (883)
Q Consensus       110 LI~ay~~~g~~eeA~~ll~~M~~~Gi~Pd----~~ty~~Li~a~~~~g~~~~A~~i~~~m~~~----g~~pd-~-tyn~L  179 (883)
                      .-..+...|++++|..++++........+    ...+..+...+...|+++.|...+....+.    +..+. . .+..+
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   97 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   97 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             99999988899999999999985486899679999999999999987999999999999999987501148999999888


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHH----CCCC--CCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC----CCCCHHHHHH
Q ss_conf             9999988998899999999784----9999--999-999999999997399689999999999859----9999999999
Q 002761          180 VEELVRNKYLEDANKVFLRGAK----GGLR--ATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAAG----RMATTFHFNH  248 (883)
Q Consensus       180 I~~y~k~G~~eeA~~lf~~M~~----~gi~--pd~-~tyn~LI~a~~~~g~~e~A~~lf~~M~~~g----i~pd~~tyn~  248 (883)
                      ...|...|++..+...+.....    ....  +.. ..+..+...+...|+++.+...+.......    .......+..
T Consensus        98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  177 (366)
T d1hz4a_          98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM  177 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             78878888899999889999998675034125678889988878999814566668999998887663002468999988


Q ss_pred             HHHHHHHCCCHHHHHHHHHHCHH--CCCCCCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC-CCHHHH
Q ss_conf             99999985997999999998151--8999999--999999999999983994619999999999596269999-999999
Q 002761          249 LLSCQATCGIPEVAFATFENMEY--GEDYMKP--DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ-PNVKTY  323 (883)
Q Consensus       249 LI~ay~k~G~~e~A~~lf~~M~~--g~~gi~p--d~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~-Pd~~Ty  323 (883)
                      +...+...+....+...+.....  ...+..+  ....+..+...+...|   ....|...+........+.. .....+
T Consensus       178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~  254 (366)
T d1hz4a_         178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG---DKAAAANWLRHTAKPEFANNHFLQGQW  254 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             88888764667888899999999998731157269999999999998604---489899999999976224666777889


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHC----CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             99999999829999999999998767----799742136688883799999999983998899999999964
Q 002761          324 ALLVECFTKYCAVTEAIRHFRALQNY----EGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK  391 (883)
Q Consensus       324 ~~LI~a~~~~g~~eeA~~if~~m~~~----~~~~~~~~~~~~~~dtY~~LI~~y~k~G~~eeA~~ll~~M~~  391 (883)
                      ..+..++...|++++|...++.....    +..+...       ..|..+...|.+.|++++|.+.+++...
T Consensus       255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN-------RNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             9999999875879999999999998876426674799-------9999999999987899999999999999

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=4e-05  Score=50.05  Aligned_cols=28  Identities=7%  Similarity=-0.062  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf             9999999998399889999999996499
Q 002761          366 LSLYLRALCREGRIIELLEALEAMAKDN  393 (883)
Q Consensus       366 Y~~LI~~y~k~G~~eeA~~ll~~M~~~g  393 (883)
                      |..+...|...|++++|...|++....+
T Consensus       212 ~~~lg~~~~~~g~~~~A~~~~~~al~~~  239 (259)
T d1xnfa_         212 NFYLGKYYLSLGDLDSATALFKLAVANN  239 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf             9999999998789999999999999839

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.38  E-value=5e-06  Score=56.37  Aligned_cols=107  Identities=9%  Similarity=-0.040  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHCCCHHHHHHHH
Q ss_conf             7999999999998299904999999999998899--88999999997849999999999999-99999739968999999
Q 002761          155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKY--LEDANKVFLRGAKGGLRATDEIYDLM-IAEDCKAGDHSNALEIA  231 (883)
Q Consensus       155 ~~~A~~i~~~m~~~g~~pd~tyn~LI~~y~k~G~--~eeA~~lf~~M~~~gi~pd~~tyn~L-I~a~~~~g~~e~A~~lf  231 (883)
                      +..+..+++...+........|..+..++...+.  .++|...+....+.. +++...+... ...+...+.++.|+..+
T Consensus        89 ~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~  167 (334)
T d1dcea1          89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT  167 (334)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             999999999999868886798988648998843042899999999998559-2121111057899987445528999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             99998599999999999999999859979999
Q 002761          232 YEMEAAGRMATTFHFNHLLSCQATCGIPEVAF  263 (883)
Q Consensus       232 ~~M~~~gi~pd~~tyn~LI~ay~k~G~~e~A~  263 (883)
                      +....... -+...|+.+-..+.+.|+.++|.
T Consensus       168 ~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~  198 (334)
T d1dcea1         168 DSLITRNF-SNYSSWHYRSCLLPQLHPQPDSG  198 (334)
T ss_dssp             HTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             HHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHH
T ss_conf             99887189-87999999999999826889899

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.35  E-value=9.9e-06  Score=54.32  Aligned_cols=104  Identities=5%  Similarity=-0.021  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHCCCHHHHHHH
Q ss_conf             88999999997849999999999999999997399--689999999999859999999999-999999985997999999
Q 002761          189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGD--HSNALEIAYEMEAAGRMATTFHFN-HLLSCQATCGIPEVAFAT  265 (883)
Q Consensus       189 ~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~~~g~--~e~A~~lf~~M~~~gi~pd~~tyn-~LI~ay~k~G~~e~A~~l  265 (883)
                      +++|+.+++...+.. +-+...|..+..++...+.  +++|...+..+..... ++...+. .....+...+..+.|...
T Consensus        89 ~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~  166 (334)
T d1dcea1          89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF  166 (334)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             999999999999868-8867989886489988430428999999999985592-12111105789998744552899999


Q ss_pred             HHHCHHCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             99815189999999999999999999839946
Q 002761          266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYD  297 (883)
Q Consensus       266 f~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d  297 (883)
                      ++....  . -+-+...|+.+...+...|.++
T Consensus       167 ~~~~i~--~-~p~~~~a~~~l~~~~~~~~~~~  195 (334)
T d1dcea1         167 TDSLIT--R-NFSNYSSWHYRSCLLPQLHPQP  195 (334)
T ss_dssp             HHTTTT--T-TCCCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHH--C-CCCCHHHHHHHHHHHHHHCCHH
T ss_conf             999887--1-8987999999999999826889

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=0.00075  Score=41.19  Aligned_cols=95  Identities=15%  Similarity=0.007  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             99999999998599899999999999889999999999999999906997999999999998299904999999999998
Q 002761          106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVR  185 (883)
Q Consensus       106 tyn~LI~ay~~~g~~eeA~~ll~~M~~~Gi~Pd~~ty~~Li~a~~~~g~~~~A~~i~~~m~~~g~~pd~tyn~LI~~y~k  185 (883)
                      +|..+-..|.+.|++++|...|++..... +-+..+|..+..++.+.|+++.|...|..+.+.......++..+...|..
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999998799999999999854349-99889996004278887778875234468999876111158889999998


Q ss_pred             CCCHHHHHHHHHHHHH
Q ss_conf             8998899999999784
Q 002761          186 NKYLEDANKVFLRGAK  201 (883)
Q Consensus       186 ~G~~eeA~~lf~~M~~  201 (883)
                      .|+.++|...|+...+
T Consensus       118 ~g~~~~A~~~~~~al~  133 (259)
T d1xnfa_         118 GGRDKLAQDDLLAFYQ  133 (259)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             7667999999999986

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.57  E-value=0.0024  Score=37.69  Aligned_cols=21  Identities=5%  Similarity=-0.045  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHCCCHHHHHHHH
Q ss_conf             999999999889988999999
Q 002761          176 WLILVEELVRNKYLEDANKVF  196 (883)
Q Consensus       176 yn~LI~~y~k~G~~eeA~~lf  196 (883)
                      |+.+..+|.+.|++++|...+
T Consensus        80 ~~~~g~~y~~~~~~~~A~~~~  100 (290)
T d1qqea_          80 YVEAYKCFKSGGNSVNAVDSL  100 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHH
T ss_conf             999999999808858889999

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.0026  Score=37.41  Aligned_cols=130  Identities=11%  Similarity=0.017  Sum_probs=67.2

Q ss_pred             HHHHHCCCHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHH
Q ss_conf             99998599799999999815189999999999999999999839946199999999995962699999-99999999999
Q 002761          251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVEC  329 (883)
Q Consensus       251 ~ay~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a  329 (883)
                      ..+...|+++.|.+.|..+.      .|+...|..+-..|...|   +.++|++.|++.++    +.| +...|..+-.+
T Consensus        13 ~~~~~~~d~~~Al~~~~~i~------~~~~~~~~nlG~~~~~~g---~~~~A~~~~~kAl~----ldp~~~~a~~~~g~~   79 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILK---NMTEAEKAFTRSIN----RDKHLAVAYFQRGML   79 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHCC------CCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_conf             99998779999999998648------988999999999999858---91467878999999----855234667889999


Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCCCCCCC--CCCC-----CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf             99829999999999998767799742136--6888-----8379999999998399889999999996499
Q 002761          330 FTKYCAVTEAIRHFRALQNYEGGTKVLHN--EGNF-----GDPLSLYLRALCREGRIIELLEALEAMAKDN  393 (883)
Q Consensus       330 ~~~~g~~eeA~~if~~m~~~~~~~~~~~~--~~~~-----~dtY~~LI~~y~k~G~~eeA~~ll~~M~~~g  393 (883)
                      +.+.|++++|...|+..............  .+..     ..++..+-.+|.+.|++++|.+.|.......
T Consensus        80 ~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          80 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf             98542499999999999986726736789986654363058899999999999789999999999998369

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.52  E-value=0.0028  Score=37.18  Aligned_cols=125  Identities=16%  Similarity=0.074  Sum_probs=43.9

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCCHH-H-HHHHHH
Q ss_conf             9999859989999999999988----9999-9999999999999069979999999999982----99904-9-999999
Q 002761          112 VAYTLNGDHEGAMHSLKRELSA----GVRP-LHETLIALARLFGSKGLATKGLEILAAMEKI----NYDIR-Q-AWLILV  180 (883)
Q Consensus       112 ~ay~~~g~~eeA~~ll~~M~~~----Gi~P-d~~ty~~Li~a~~~~g~~~~A~~i~~~m~~~----g~~pd-~-tyn~LI  180 (883)
                      ..|...+++++|...|.+....    +-.+ -..+|..+..+|.+.|+++.|...+......    +.... . ++..+.
T Consensus        45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~  124 (290)
T d1qqea_          45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG  124 (290)
T ss_dssp             HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             99998869999999999999999875998899999999999999808858889999976677653253205899999988


Q ss_pred             HHHHH-CCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             99998-8998899999999784----999999-99999999999973996899999999998
Q 002761          181 EELVR-NKYLEDANKVFLRGAK----GGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEMEA  236 (883)
Q Consensus       181 ~~y~k-~G~~eeA~~lf~~M~~----~gi~pd-~~tyn~LI~a~~~~g~~e~A~~lf~~M~~  236 (883)
                      ..|-. .|++++|...|.....    .+..+. ..+|..+...+...|++++|...|+....
T Consensus       125 ~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~  186 (290)
T d1qqea_         125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (290)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             86764787899998899999999873376033346889999999981739999999999998

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.0039  Score=36.20  Aligned_cols=79  Identities=10%  Similarity=0.045  Sum_probs=28.4

Q ss_pred             HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             85998999999999998899999999999999999069979999999999982999049999999999988998899999
Q 002761          116 LNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKV  195 (883)
Q Consensus       116 ~~g~~eeA~~ll~~M~~~Gi~Pd~~ty~~Li~a~~~~g~~~~A~~i~~~m~~~g~~pd~tyn~LI~~y~k~G~~eeA~~l  195 (883)
                      ..|+++.|++.|.+.    ..|+..+|..+-.++...|+++.|...|.+.++........|..+-.+|.+.|+.++|...
T Consensus        17 ~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~   92 (192)
T d1hh8a_          17 DKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD   92 (192)
T ss_dssp             HTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HCCCHHHHHHHHHHC----CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             877999999999864----8988999999999999858914678789999998552346678899999854249999999


Q ss_pred             HHH
Q ss_conf             999
Q 002761          196 FLR  198 (883)
Q Consensus       196 f~~  198 (883)
                      |++
T Consensus        93 ~~k   95 (192)
T d1hh8a_          93 LKE   95 (192)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=0.0048  Score=35.54  Aligned_cols=100  Identities=10%  Similarity=0.007  Sum_probs=0.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             99999999999999985998999999999998899999999999999999069979999999999982999049999999
Q 002761          101 SPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILV  180 (883)
Q Consensus       101 ~pd~~tyn~LI~ay~~~g~~eeA~~ll~~M~~~Gi~Pd~~ty~~Li~a~~~~g~~~~A~~i~~~m~~~g~~pd~tyn~LI  180 (883)
                      +|+...+...-..|.+.|++++|+..|.+....... +...|..+..+|.+.|+++.|...|....+.......+|..+.
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             964999999999999869999999999999985999-8999981789874100000124788888871887389999999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHH
Q ss_conf             999988998899999999784
Q 002761          181 EELVRNKYLEDANKVFLRGAK  201 (883)
Q Consensus       181 ~~y~k~G~~eeA~~lf~~M~~  201 (883)
                      .+|.+.|++++|...|.....
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
T ss_conf             999987999999999999987

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.015  Score=32.13  Aligned_cols=22  Identities=14%  Similarity=0.083  Sum_probs=6.9

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             9999999988998899999999
Q 002761          177 LILVEELVRNKYLEDANKVFLR  198 (883)
Q Consensus       177 n~LI~~y~k~G~~eeA~~lf~~  198 (883)
                      ..+..+|...|++++|...|+.
T Consensus        75 ~~~g~~~~~~~~~~~A~~~~~~   96 (117)
T d1elwa_          75 SRKAAALEFLNRFEEAKRTYEE   96 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHH
T ss_conf             8899999981279999999999

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.018  Score=31.53  Aligned_cols=127  Identities=14%  Similarity=-0.035  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q ss_conf             9999999999990699799999999999829990499999999999889988999999997849999999-999999999
Q 002761          139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAE  217 (883)
Q Consensus       139 ~~ty~~Li~a~~~~g~~~~A~~i~~~m~~~g~~pd~tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a  217 (883)
                      ...+...-+.|.+.|+++.|...|....+........|..+..+|...|++++|...|+...+  +.|+. .+|..+..+
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~   87 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH--HCCCCHHHHHHHHHH
T ss_conf             999999999999958999999986602110001133324567888740542128888999998--754466877999999


Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHCCCHHHHHHHHHH
Q ss_conf             99739968999999999985999999999999999--9985997999999998
Q 002761          218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC--QATCGIPEVAFATFEN  268 (883)
Q Consensus       218 ~~~~g~~e~A~~lf~~M~~~gi~pd~~tyn~LI~a--y~k~G~~e~A~~lf~~  268 (883)
                      +...|++++|...++........ +...+..+-..  ....+.++.|......
T Consensus        88 ~~~~g~~~eA~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~~~a~~~~~~  139 (159)
T d1a17a_          88 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH  139 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             99949999999989999872999-79999999999999998989999757388

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.28  E-value=0.013  Score=32.57  Aligned_cols=49  Identities=12%  Similarity=0.008  Sum_probs=18.2

Q ss_pred             CCCHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             5997999999998151899999999999999999998399461999999999959
Q 002761          256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV  310 (883)
Q Consensus       256 ~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~  310 (883)
                      .|++++|...+++..+   --+.|...+..+...|+..|   +.++|...|+...
T Consensus         9 ~G~l~eAl~~l~~al~---~~P~d~~ar~~La~lL~~~G---~~e~A~~~l~~a~   57 (264)
T d1zbpa1           9 EGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDG---DFERADEQLMQSI   57 (264)
T ss_dssp             TTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
T ss_conf             8899999999999999---78999999999999999879---9999999999999

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.042  Score=28.98  Aligned_cols=112  Identities=11%  Similarity=-0.005  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHCCCCCC-HHHHHHHHHH
Q ss_conf             99999999906997999999999998299904999999999998899889---9999999784999999-9999999999
Q 002761          142 LIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLED---ANKVFLRGAKGGLRAT-DEIYDLMIAE  217 (883)
Q Consensus       142 y~~Li~a~~~~g~~~~A~~i~~~m~~~g~~pd~tyn~LI~~y~k~G~~ee---A~~lf~~M~~~gi~pd-~~tyn~LI~a  217 (883)
                      ...+++.+...++++.|.+.|....+.+.....++..+-.++.+.++.++   |..+|++.......|+ ..+|..+-.+
T Consensus         2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             77798873699999999999999883299989999999999998512678999999999998606993199999999999


Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             99739968999999999985999999999999999998
Q 002761          218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT  255 (883)
Q Consensus       218 ~~~~g~~e~A~~lf~~M~~~gi~pd~~tyn~LI~ay~k  255 (883)
                      |.+.|++++|...|+...+  +.|+..-...+....-+
T Consensus        82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~~~I~~  117 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKELERLIDK  117 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHH
T ss_conf             9997316999999999997--69098999999999999

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.83  E-value=0.046  Score=28.70  Aligned_cols=93  Identities=6%  Similarity=-0.131  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf             99999999985998999999999998899999999999999999069979999999999982999049999999999988
Q 002761          107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRN  186 (883)
Q Consensus       107 yn~LI~ay~~~g~~eeA~~ll~~M~~~Gi~Pd~~ty~~Li~a~~~~g~~~~A~~i~~~m~~~g~~pd~tyn~LI~~y~k~  186 (883)
                      +-.+...+.+.|++.+|...|++....... +...|..+..++.+.++++.|...+....+.......+|..+...|...
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf             999999999876058999988610112111-1001233545641012587741000001111110000037899999997


Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             99889999999978
Q 002761          187 KYLEDANKVFLRGA  200 (883)
Q Consensus       187 G~~eeA~~lf~~M~  200 (883)
                      |+.++|.+.|++..
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             89999999999981

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=95.71  E-value=0.026  Score=30.44  Aligned_cols=50  Identities=18%  Similarity=0.032  Sum_probs=26.1

Q ss_pred             HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCH
Q ss_conf             739968999999999985999999999999999998599799999999815
Q 002761          220 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME  270 (883)
Q Consensus       220 ~~g~~e~A~~lf~~M~~~gi~pd~~tyn~LI~ay~k~G~~e~A~~lf~~M~  270 (883)
                      +.|++++|...+++..+.. +-|...+..+...|+..|++++|...|+...
T Consensus         8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~   57 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI   57 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             8889999999999999978-9999999999999998799999999999999

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.66  E-value=0.1  Score=26.25  Aligned_cols=69  Identities=10%  Similarity=-0.033  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HCCCCCCHH
Q ss_conf             9999999999889988999999997849999999999999999997399689999999999-----859999999
Q 002761          175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME-----AAGRMATTF  244 (883)
Q Consensus       175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~~~g~~e~A~~lf~~M~-----~~gi~pd~~  244 (883)
                      .+..+...+.+.|++++|...++...... +-+...|..++.+|...|+..+|++.|+.+.     +.|+.|...
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~  142 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  142 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             99999999988799057899999999849-851999999999999855799999999999999899848996899

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.17  Score=24.83  Aligned_cols=56  Identities=9%  Similarity=-0.107  Sum_probs=20.2

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             999999997399689999999999859999999999999999985997999999998
Q 002761          212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN  268 (883)
Q Consensus       212 n~LI~a~~~~g~~e~A~~lf~~M~~~gi~pd~~tyn~LI~ay~k~G~~e~A~~lf~~  268 (883)
                      ..+-..+...+++++|...|....... +-+...|+.|-..|...|+..+|...|.+
T Consensus       156 ~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~r  211 (497)
T d1ya0a1         156 VHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCR  211 (497)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             999999998024789999999999878-99659999999999986999999999999

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.88  E-value=0.21  Score=24.10  Aligned_cols=61  Identities=8%  Similarity=-0.115  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             99999999998899889999999978499999999999999999973996899999999998
Q 002761          175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA  236 (883)
Q Consensus       175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~~~g~~e~A~~lf~~M~~  236 (883)
                      .|+.+-.+|.+.|++++|+..+....+.. +-+..+|..+..++...|++++|...|....+
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             99989999986402101366655443100-02236777699999980479999999999998

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.86  E-value=0.21  Score=24.08  Aligned_cols=113  Identities=10%  Similarity=0.038  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q ss_conf             9999999999990699799999999999829990499999999999889988999999997849999999-999999999
Q 002761          139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAE  217 (883)
Q Consensus       139 ~~ty~~Li~a~~~~g~~~~A~~i~~~m~~~g~~pd~tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a  217 (883)
                      ...+..+-..+.+.++...|...+....+..  +..++..+...+...+++++|...|.+..+  +.|+. ..|+.+-..
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~  195 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--CQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAIL  195 (497)
T ss_dssp             -----------------------CCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
T ss_conf             9999985799875899999999999882788--999999999999980247899999999998--789965999999999


Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf             997399689999999999859999999999999999985
Q 002761          218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC  256 (883)
Q Consensus       218 ~~~~g~~e~A~~lf~~M~~~gi~pd~~tyn~LI~ay~k~  256 (883)
                      +...|+..+|...|.+..... .|...++..|...+.+.
T Consensus       196 ~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         196 ASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHH
T ss_conf             998699999999999998179-99789999999999875

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.02  E-value=0.27  Score=23.38  Aligned_cols=27  Identities=15%  Similarity=0.006  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             999999999997399689999999999
Q 002761          209 EIYDLMIAEDCKAGDHSNALEIAYEME  235 (883)
Q Consensus       209 ~tyn~LI~a~~~~g~~e~A~~lf~~M~  235 (883)
                      .+|..+..++...|++++|...|....
T Consensus       102 ka~~~~g~~~~~lg~~~~A~~~~~~al  128 (153)
T d2fbna1         102 KALYKLGVANMYFGFLEEAKENLYKAA  128 (153)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             246776899999689999999999999

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.00  E-value=0.27  Score=23.36  Aligned_cols=162  Identities=9%  Similarity=0.031  Sum_probs=79.3

Q ss_pred             HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             25993799999999998899999999999999999859989999999999988999999999999999990699799999
Q 002761           81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLE  160 (883)
Q Consensus        81 k~g~~~~A~~lf~~M~~~G~~pd~~tyn~LI~ay~~~g~~eeA~~ll~~M~~~Gi~Pd~~ty~~Li~a~~~~g~~~~A~~  160 (883)
                      +.|.++.|..++..+.         -|..++..+.+.+++..|.+++...      -+..+|..+..+|.+......+  
T Consensus        26 ~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la--   88 (336)
T d1b89a_          26 DEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA--   88 (336)
T ss_dssp             ---CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH--
T ss_pred             HCCCHHHHHHHHHHCC---------CHHHHHHHHHHHCCHHHHHHHHHHC------CCHHHHHHHHHHHHHCCHHHHH--
T ss_conf             7877999999998678---------9999999997031599999999880------8899999999999727287899--


Q ss_pred             HHHHHHHCCCCHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf             99999982999049-99999999998899889999999978499999999999999999973996899999999998599
Q 002761          161 ILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGR  239 (883)
Q Consensus       161 i~~~m~~~g~~pd~-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~~~g~~e~A~~lf~~M~~~gi  239 (883)
                         ++......... ....++..|-..|..++...+++..... -..+...++-++..|++.+ .++   +.+.+....-
T Consensus        89 ---~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~k---l~e~l~~~s~  160 (336)
T d1b89a_          89 ---QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQK---MREHLELFWS  160 (336)
T ss_dssp             ---HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHH---HHHHHHHHST
T ss_pred             ---HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHC-HHH---HHHHHHHCCC
T ss_conf             ---9999875357887899999998769859999999999757-7444679999999999869-499---9999986023


Q ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHCH
Q ss_conf             9999999999999998599799999999815
Q 002761          240 MATTFHFNHLLSCQATCGIPEVAFATFENME  270 (883)
Q Consensus       240 ~pd~~tyn~LI~ay~k~G~~e~A~~lf~~M~  270 (883)
                      .   .-..-++..|-..+.+.++.-++..+.
T Consensus       161 ~---y~~~k~~~~c~~~~l~~elv~Ly~~~~  188 (336)
T d1b89a_         161 R---VNIPKVLRAAEQAHLWAELVFLYDKYE  188 (336)
T ss_dssp             T---SCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred             C---CCHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf             5---999999999887487499999998558

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.93  E-value=0.34  Score=22.62  Aligned_cols=123  Identities=9%  Similarity=-0.078  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH--------------H-HHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf             99999999999906997999999999998299904--------------9-99999999998899889999999978499
Q 002761          139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIR--------------Q-AWLILVEELVRNKYLEDANKVFLRGAKGG  203 (883)
Q Consensus       139 ~~ty~~Li~a~~~~g~~~~A~~i~~~m~~~g~~pd--------------~-tyn~LI~~y~k~G~~eeA~~lf~~M~~~g  203 (883)
                      ...+...-..+.+.|+++.|...|...+.......              . +|+.+..+|.+.|++++|...++....  
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~--   90 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE--   90 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH--
T ss_conf             999999999999969999999999999887510100035777640646799999999998864211011000000010--


Q ss_pred             CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             999-9999999999999739968999999999985999999999999999998599799999
Q 002761          204 LRA-TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA  264 (883)
Q Consensus       204 i~p-d~~tyn~LI~a~~~~g~~e~A~~lf~~M~~~gi~pd~~tyn~LI~ay~k~G~~e~A~~  264 (883)
                      +.| +..+|..+..++...|++++|...|+...+.... +..+...+-...-+.........
T Consensus        91 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~~~~~~~e~  151 (170)
T d1p5qa1          91 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREK  151 (170)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             02231034677799998722299999999999972989-89999999999999999999999

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.71  E-value=0.36  Score=22.48  Aligned_cols=136  Identities=9%  Similarity=0.038  Sum_probs=55.5

Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             99999999999999069979999999999982999049999999999988998899999999784999999999999999
Q 002761          137 PLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA  216 (883)
Q Consensus       137 Pd~~ty~~Li~a~~~~g~~~~A~~i~~~m~~~g~~pd~tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~  216 (883)
                      ||..--..+..-|.+.|.++.|..+|..+.        -|..++..|.+.+++..|.+++.+.      -+..+|..+..
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~--------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~   77 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF   77 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT--------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHCCCHHHHHHHHHHCC--------CHHHHHHHHHHHCCHHHHHHHHHHC------CCHHHHHHHHH
T ss_conf             985789999999987877999999998678--------9999999997031599999999880------88999999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             999739968999999999985999999999999999998599799999999815189999999999999999999839
Q 002761          217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE  294 (883)
Q Consensus       217 a~~~~g~~e~A~~lf~~M~~~gi~pd~~tyn~LI~ay~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G  294 (883)
                      .+........+     .+.......+......++..|-..|..+....+++...  .. -..+...++-++..|++.+
T Consensus        78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~--~~-~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL--GL-ERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT--TS-TTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHCCHHHHH-----HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--CC-CCCCHHHHHHHHHHHHHHC
T ss_conf             99727287899-----99998753578878999999987698599999999997--57-7444679999999999869

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.63  E-value=0.37  Score=22.44  Aligned_cols=111  Identities=12%  Similarity=0.066  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH------H-HH
Q ss_conf             9999999999998599899999999999889999999999999999906997999999999998299904------9-99
Q 002761          104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR------Q-AW  176 (883)
Q Consensus       104 ~~tyn~LI~ay~~~g~~eeA~~ll~~M~~~Gi~Pd~~ty~~Li~a~~~~g~~~~A~~i~~~m~~~g~~pd------~-ty  176 (883)
                      ...+-.+-..|.+.|++++|+..|.+....... +...+..+..+|.+.|+++.|...+..+++......      . +|
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             899999999999859999999999999884964-5899986889998818607789999999986801278898899999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             99999999889988999999997849999999999999999
Q 002761          177 LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE  217 (883)
Q Consensus       177 n~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a  217 (883)
                      ..+-..+...+++++|...|.....  ..++......+-.+
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l~~~  121 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQA  121 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHH--CCCCHHHHHHHHHH
T ss_conf             9999999993889999999999984--59999999999999

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=85.57  E-value=0.75  Score=20.27  Aligned_cols=10  Identities=20%  Similarity=0.149  Sum_probs=3.1

Q ss_pred             CCCHHHHHHH
Q ss_conf             5998999999
Q 002761          117 NGDHEGAMHS  126 (883)
Q Consensus       117 ~g~~eeA~~l  126 (883)
                      .|++.+|...
T Consensus        28 ~~~~~~A~~~   37 (168)
T d1kt1a1          28 GGKYVQAVIQ   37 (168)
T ss_dssp             TTCHHHHHHH
T ss_pred             CCCHHHHHHH
T ss_conf             5999999999

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=84.69  E-value=0.82  Score=20.00  Aligned_cols=62  Identities=15%  Similarity=0.105  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCC
Q ss_conf             99999999999859989999999999988999999999999999990----699799999999999829
Q 002761          105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS----KGLATKGLEILAAMEKIN  169 (883)
Q Consensus       105 ~tyn~LI~ay~~~g~~eeA~~ll~~M~~~Gi~Pd~~ty~~Li~a~~~----~g~~~~A~~i~~~m~~~g  169 (883)
                      ..+..|-..+-+.+++.+|++.|++....|   +...+..|-..|..    ..+...+...+......+
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~   68 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN   68 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             999999999998779999999999999789---999999999999809996056999987501222111