Citrus Sinensis ID: 002795
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 880 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FJW6 | 798 | Pentatricopeptide repeat- | yes | no | 0.770 | 0.849 | 0.621 | 0.0 | |
| Q9SA76 | 1006 | Pentatricopeptide repeat- | no | no | 0.527 | 0.461 | 0.387 | 1e-103 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.465 | 0.500 | 0.224 | 8e-26 | |
| O64624 | 822 | Pentatricopeptide repeat- | no | no | 0.444 | 0.475 | 0.240 | 4e-24 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.421 | 0.588 | 0.207 | 4e-21 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.362 | 0.423 | 0.233 | 3e-20 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.397 | 0.585 | 0.209 | 7e-20 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.414 | 0.606 | 0.198 | 8e-20 | |
| Q9S7Q2 | 862 | Pentatricopeptide repeat- | no | no | 0.403 | 0.411 | 0.227 | 2e-19 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.357 | 0.347 | 0.231 | 3e-19 |
| >sp|Q9FJW6|PP451_ARATH Pentatricopeptide repeat-containing protein At5g67570, chloroplastic OS=Arabidopsis thaliana GN=DG1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/698 (62%), Positives = 547/698 (78%), Gaps = 20/698 (2%)
Query: 1 MEKIKQKLLKHGVFPTPKILRSIRKKEIQKHNRKQAK-IQSQAQL-SPSQQQALAEEQHF 58
MEKIK++LLK+GV PTPKIL ++RKKEIQKHNR+ + +S+A++ + +Q+Q++ EE F
Sbjct: 23 MEKIKRRLLKYGVDPTPKILNNLRKKEIQKHNRRTKRETESEAEVYTEAQKQSMEEEARF 82
Query: 59 QTLKREFKMFRRAVAAKSGDP---LVGKPWERIERLKFRQLAS--ESKEFAGDNLKRENL 113
QTL+RE+K F R+++ K G +VG PWE IER+K ++L S +E + LK+ENL
Sbjct: 83 QTLRREYKQFTRSISGKRGGDVGLMVGNPWEGIERVKLKELVSGVRREEVSAGELKKENL 142
Query: 114 RELKEMFEKDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAK 173
+ELK++ EKDL WVLDDDV + K E+ P KRWR+E EA+RVLVDRLS RE+ K
Sbjct: 143 KELKKILEKDLRWVLDDDVDVEEFDLDK--EFDPAKRWRNEGEAVRVLVDRLSGREINEK 200
Query: 174 NWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233
+WKFVR+MNQSGL FTE QMLK++ LG K SW+QA +V+ WVY K ++ L+SRFVYTK
Sbjct: 201 HWKFVRMMNQSGLQFTEDQMLKIVDRLGRKQSWKQASAVVHWVYSDKKRKHLRSRFVYTK 260
Query: 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293
LL++LG A RP EAL+IFN ML D LYPD+AAYH +AVTLGQ GLLKEL+K+IERMRQK
Sbjct: 261 LLSVLGFARRPQEALQIFNQMLGDRQLYPDMAAYHCIAVTLGQAGLLKELLKVIERMRQK 320
Query: 294 PSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353
P+K KN+ +KNWDPVLEPDLVVYNA+LNACVP+ QWK V WVF +LRK+GL+P+ ATYG
Sbjct: 321 PTKLTKNLRQKNWDPVLEPDLVVYNAILNACVPTLQWKAVSWVFVELRKNGLRPNGATYG 380
Query: 354 LAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQR 413
LAMEVML+SGK+D VH+FFRKM SGEA A+TYKVLVRA W EGKI EAV AVR+MEQ+
Sbjct: 381 LAMEVMLESGKFDRVHDFFRKMKSSGEAPKAITYKVLVRALWREGKIEEAVEAVRDMEQK 440
Query: 414 GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDD 473
GV+GT SVYYELACCLCNNGRW DAML V ++K L + +PLEITFTGLI +S++GGH+DD
Sbjct: 441 GVIGTGSVYYELACCLCNNGRWCDAMLEVGRMKRLENCRPLEITFTGLIAASLNGGHVDD 500
Query: 474 CISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL 533
C++IFQ+MKD C+PNIGT N MLKVY RNDMFS+AKELFEE +S L
Sbjct: 501 CMAIFQYMKDKCDPNIGTANMMLKVYGRNDMFSEAKELFEE----------IVSRKETHL 550
Query: 534 KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEH 593
P+EYTYS MLEASA + QWEYFE+VY+ M LSG Q+DQTKHA +L+EASRAGK LLEH
Sbjct: 551 VPNEYTYSFMLEASARSLQWEYFEHVYQTMVLSGYQMDQTKHASMLIEASRAGKWSLLEH 610
Query: 594 AFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNE 653
AFD++LE GEIPHPLFFTE+L A + ++++A+ LIN +A A F I+E +WT+LFE ++
Sbjct: 611 AFDAVLEDGEIPHPLFFTELLCHATAKGDFQRAITLINTVALASFQISEEEWTDLFEEHQ 670
Query: 654 DRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALC 691
D +++D L KL + L C+ SE TVSNLS++L + C
Sbjct: 671 DWLTQDNLHKLSDHLIECDYV-SEPTVSNLSKSLKSRC 707
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Involved in the regulation of early chloroplast development and chloroplast gene expression. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SA76|PPR64_ARATH Pentatricopeptide repeat-containing protein At1g30610, chloroplastic OS=Arabidopsis thaliana GN=EMB2279 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/503 (38%), Positives = 296/503 (58%), Gaps = 39/503 (7%)
Query: 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVY 217
I L L+ ++ W+F + + + + +T+ +++L+ LG G+WR+ + V++W+
Sbjct: 437 IEKLAKVLNGADINMPEWQFSKAIRSAKIRYTDYTVMRLIHFLGKLGNWRRVLQVIEWLQ 496
Query: 218 GLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV 277
+ K R +YT L +LGK+ RP EAL +F+ ML + YPD+ AY S+AVTLGQ
Sbjct: 497 RQDRYKSNKIRIIYTTALNVLGKSRRPVEALNVFHAMLLQISSYPDMVAYRSIAVTLGQA 556
Query: 278 GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVF 337
G +KEL +I+ MR P K+ K + WDP LEPD+VVYNAVLNACV QW+G FWV
Sbjct: 557 GHIKELFYVIDTMRSPPKKKFKPTTLEKWDPRLEPDVVVYNAVLNACVQRKQWEGAFWVL 616
Query: 338 KQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEE 397
+QL++ G KPS TYGL MEVML KY+LVHEFFRKM KS AL Y+VLV W+E
Sbjct: 617 QQLKQRGQKPSPVTYGLIMEVMLACEKYNLVHEFFRKMQKSS-IPNALAYRVLVNTLWKE 675
Query: 398 GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAM--------LVVEKIKSLR 449
GK +EAV V +ME RG+VG+A++YY+LA CLC+ GR + + +V++ I++L
Sbjct: 676 GKSDEAVHTVEDMESRGIVGSAALYYDLARCLCSAGRCNEGLNMVNFVNPVVLKLIENLI 735
Query: 450 H-------------------SKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIG 490
+ +KPL +T+TGLI + +D G+I + IF MK C PN+
Sbjct: 736 YKADLVHTIQFQLKKICRVANKPLVVTYTGLIQACVDSGNIKNAAYIFDQMKKVCSPNLV 795
Query: 491 TVNAMLKVYSRNDMFSKAKELFEETTR-----ANSSGYTFLSGDGAPLKPDEYTYSSMLE 545
T N MLK Y + +F +A+ELF++ + NSS + + + PD YT+++ML+
Sbjct: 796 TCNIMLKAYLQGGLFEEARELFQKMSEDGNHIKNSSDFE------SRVLPDTYTFNTMLD 849
Query: 546 ASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP 605
A +W+ F Y Y+ M G + +H +++EASRAGK ++E ++ + + IP
Sbjct: 850 TCAEQEKWDDFGYAYREMLRHGYHFNAKRHLRMVLEASRAGKEEVMEATWEHMRRSNRIP 909
Query: 606 HPLFFTEMLIQAIVQSNYEKAVA 628
E + + + ++ A++
Sbjct: 910 PSPLIKERFFRKLEKGDHISAIS 932
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May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (299), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 101/449 (22%), Positives = 189/449 (42%), Gaps = 39/449 (8%)
Query: 189 TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEAL 248
T ++L LKGLG + A+ DW KD + + V ++++LGK GR A
Sbjct: 134 TSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAA 193
Query: 249 RIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQ---------------- 292
+FN + ED D+ +Y S+ G +E V + ++M +
Sbjct: 194 NMFNGLQED-GFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNV 252
Query: 293 -----KPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347
P +I ++ K + PD YN ++ C + VF++++ +G
Sbjct: 253 FGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSY 312
Query: 348 SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAV 407
TY ++V +S + + +M +G + +TY L+ A+ +G ++EA+
Sbjct: 313 DKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELK 372
Query: 408 RNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD 467
M ++G Y L G+ + AM + E++++ KP TF I +
Sbjct: 373 NQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRN-AGCKPNICTFNAFIKMYGN 431
Query: 468 GGHIDDCISIFQHMKDHC--EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTF 525
G + + IF + + C P+I T N +L V+ +N M S+ +F+E RA G+
Sbjct: 432 RGKFTEMMKIFDEI-NVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA---GFV- 486
Query: 526 LSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRA 585
P+ T+++++ A + +E VY+ M +G D + + +L +R
Sbjct: 487 ---------PERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARG 537
Query: 586 GKCHLLEHAFDSLLEAGEIPHPLFFTEML 614
G E + + P+ L + +L
Sbjct: 538 GMWEQSEKVLAEMEDGRCKPNELTYCSLL 566
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 104/432 (24%), Positives = 192/432 (44%), Gaps = 41/432 (9%)
Query: 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGL 219
VLV+ + E+ +T + F + +S L+ T+ ++ L+KGL D G W +A+ + +W+
Sbjct: 110 VLVNSIVEQPLTGLSRFFDSV--KSELLRTD--LVSLVKGLDDSGHWERAVFLFEWLVLS 165
Query: 220 KDKRDLK-SRFVYTKLLAILGKAGRPHEALRIFN-LMLEDCNLYPDIAAYHSVAVTLGQV 277
+ LK V + ILG+ + A ++ + + L++ L D+ AY ++ +
Sbjct: 166 SNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLL--DVRAYTTILHAYSRT 223
Query: 278 GLLKELVKLIERMRQ-KPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP-SHQWKGVFW 335
G ++ + L ERM++ PS P LV YN +L+ W+ +
Sbjct: 224 GKYEKAIDLFERMKEMGPS----------------PTLVTYNVILDVFGKMGRSWRKILG 267
Query: 336 VFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFW 395
V ++R GLK T + + G EFF ++ G G +TY L++ F
Sbjct: 268 VLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFG 327
Query: 396 EEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE 455
+ G EA++ ++ ME+ + Y EL G ++A V+E + + P
Sbjct: 328 KAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTK-KGVMPNA 386
Query: 456 ITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEE 514
IT+T +I + G D+ + +F MK+ C PN T NA+L + + S++ E+ +
Sbjct: 387 ITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKK---SRSNEMIKM 443
Query: 515 TTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK 574
S+G + P+ T+++ML ++ V++ M G + D+
Sbjct: 444 LCDMKSNGCS----------PNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDT 493
Query: 575 HAWLLVEASRAG 586
L+ R G
Sbjct: 494 FNTLISAYGRCG 505
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/391 (20%), Positives = 165/391 (42%), Gaps = 20/391 (5%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHE 370
+P+ V +N +++ ++ + ++ G +P TYG+ + + + G DL
Sbjct: 183 QPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFN 242
Query: 371 FFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 430
KM + G L Y ++ + +++A+ + ME +G+ Y L CLC
Sbjct: 243 LLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLC 302
Query: 431 NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNI 489
N GRW DA ++ + R P TF+ LI + + G + + ++ M K +P+I
Sbjct: 303 NYGRWSDASRLLSDMIE-RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 361
Query: 490 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 549
T ++++ + +D +AK++FE S + F PD TY+++++
Sbjct: 362 VTYSSLINGFCMHDRLDEAKQMFEFMV----SKHCF---------PDVVTYNTLIKGFCK 408
Query: 550 AHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLF 609
+ E V++ M+ G + + L+ +AG C + + F ++ G P+ +
Sbjct: 409 YKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMT 468
Query: 610 FTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALC 669
+ +L EKA+ + + + T + + E K+E + C
Sbjct: 469 YNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEG---MCKAGKVEDGWDLFC 525
Query: 670 NCNAASSEITVSNLSRALHALCR--SEKERD 698
N + + V + + CR S++E D
Sbjct: 526 NLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 556
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 151/343 (44%), Gaps = 24/343 (6%)
Query: 157 AIRVLVDRLSEREMTAKNWKFVRIM-NQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDW 215
++ V+V + F++ M NQ G + L+ GL G + A+ ++D
Sbjct: 261 SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDV 320
Query: 216 VYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML-EDCNLYPDIAAYHSVAVTL 274
+ L++ D + Y +++ L K G EA+ + + M+ DC+ P+ Y+++ TL
Sbjct: 321 M--LQEGYD-PDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCS--PNTVTYNTLISTL 375
Query: 275 GQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVF 334
+ ++E +L + K + PD+ +N+++ + +
Sbjct: 376 CKENQVEEATELARVLTSKG---------------ILPDVCTFNSLIQGLCLTRNHRVAM 420
Query: 335 WVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAF 394
+F+++R G +P TY + ++ + GK D ++M SG A +TY L+ F
Sbjct: 421 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGF 480
Query: 395 WEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL 454
+ K EA ME GV + Y L LC + R +DA +++++ + KP
Sbjct: 481 CKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM-IMEGQKPD 539
Query: 455 EITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAML 496
+ T+ L+ GG I I Q M + CEP+I T ++
Sbjct: 540 KYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLI 582
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May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 81/386 (20%), Positives = 164/386 (42%), Gaps = 36/386 (9%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV-YTKLLAILGKAGRPHEALRIFNLM 254
+L+ L D G +QAM VLD + +RD + YT L+ + A+++ + M
Sbjct: 210 ILRSLCDSGKLKQAMEVLDRML----QRDCYPDVITYTILIEATCRDSGVGHAMKLLDEM 265
Query: 255 LEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL 314
D PD+ Y+ + + + G L E +K + M PS +P++
Sbjct: 266 -RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM---PSSGC------------QPNV 309
Query: 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRK 374
+ +N +L + + +W + + + G PS T+ + + + + G + K
Sbjct: 310 ITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEK 369
Query: 375 MAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGR 434
M + G +L+Y L+ F +E K++ A+ + M RG Y + LC +G+
Sbjct: 370 MPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGK 429
Query: 435 WQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK-DHCEPNIGTVN 493
+DA+ ++ ++ S + P+ IT+ +I G I + M+ +P+ T +
Sbjct: 430 VEDAVEILNQLSS-KGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYS 488
Query: 494 AMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQW 553
+++ SR +A + F E R ++P+ T++S++ + Q
Sbjct: 489 SLVGGLSREGKVDEAIKFFHEFERMG-------------IRPNAVTFNSIMLGLCKSRQT 535
Query: 554 EYFEYVYKGMALSGCQLDQTKHAWLL 579
+ M GC+ ++T + L+
Sbjct: 536 DRAIDFLVFMINRGCKPNETSYTILI 561
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/383 (19%), Positives = 156/383 (40%), Gaps = 18/383 (4%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHE 370
EPD +N ++ + + ++ ++G +P TY + + +SG L +
Sbjct: 155 EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALD 214
Query: 371 FFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 430
RKM + TY ++ + +G I+ A++ + ME +G+ + Y L LC
Sbjct: 215 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 274
Query: 431 NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNI 489
G+W D L+++ + S R P ITF L+ + G + + +++ M PNI
Sbjct: 275 KAGKWNDGALLLKDMVS-REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNI 333
Query: 490 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 549
T N ++ Y + S+A + + R S PD T++S+++
Sbjct: 334 ITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS-------------PDIVTFTSLIKGYCM 380
Query: 550 AHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLF 609
+ + V++ ++ G + ++ L+ ++GK L E F ++ G +P +
Sbjct: 381 VKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMT 440
Query: 610 FTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALC 669
+ +L EKA+ + + + + +T + E K+E N C
Sbjct: 441 YGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG---MCKGGKVEDAWNLFC 497
Query: 670 NCNAASSEITVSNLSRALHALCR 692
+ + V + + LC+
Sbjct: 498 SLPCKGVKPNVMTYTVMISGLCK 520
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/386 (22%), Positives = 155/386 (40%), Gaps = 31/386 (8%)
Query: 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIER 289
Y LL+ G EA +F M D + PD+ Y + T G++ L+++ L+
Sbjct: 249 TYNTLLSACAIRGLGDEAEMVFRTM-NDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGE 307
Query: 290 MRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA 349
M S PD+ YN +L A S K VF Q++ +G P+A
Sbjct: 308 MASGGSL---------------PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNA 352
Query: 350 ATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRN 409
TY + + + QSG+YD V + F +M S A TY +L+ F E G E V +
Sbjct: 353 NTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHD 412
Query: 410 MEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGG 469
M + + Y + G +DA +++ + + P +TG+I +
Sbjct: 413 MVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTA-NDIVPSSKAYTGVIEAFGQAA 471
Query: 470 HIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSG 528
++ + F M + P+I T +++L ++R + +++ + L
Sbjct: 472 LYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSR-----------LVD 520
Query: 529 DGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 588
G P D T+++ +EA ++E Y M S C D+ +L S A
Sbjct: 521 SGIPRNRD--TFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLV 578
Query: 589 HLLEHAFDSLLEAGEIPHPLFFTEML 614
F+ + + +P + + ML
Sbjct: 579 DECREQFEEMKASDILPSIMCYCMML 604
|
Involved in plastid gene expression. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 148/350 (42%), Gaps = 35/350 (10%)
Query: 259 NLYPDIAAYHSVAVTLGQVGLLKELVKLIERM---RQKPS------------KRIK---- 299
+L PD+ Y ++ L +V + +++++ M R PS KR K
Sbjct: 292 DLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEA 351
Query: 300 -NMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEV 358
N+ ++ D + P+L VYNA++++ ++ +F ++ K GL+P+ TY + +++
Sbjct: 352 LNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDM 411
Query: 359 MLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT 418
+ GK D F +M +G + Y L+ + G I+ A + M + + T
Sbjct: 412 FCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPT 471
Query: 419 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIF 478
Y L C+ G+ A+ + ++ + P TFT L+ G I D + +F
Sbjct: 472 VVTYTSLMGGYCSKGKINKALRLYHEMTG-KGIAPSIYTFTTLLSGLFRAGLIRDAVKLF 530
Query: 479 QHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE 537
M + + +PN T N M++ Y SKA E +E T + PD
Sbjct: 531 NEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKG-------------IVPDT 577
Query: 538 YTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGK 587
Y+Y ++ Q + G+ C+L++ + LL R GK
Sbjct: 578 YSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGK 627
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 880 | ||||||
| 255568609 | 1010 | GTP binding protein, putative [Ricinus c | 0.918 | 0.8 | 0.573 | 0.0 | |
| 356565493 | 865 | PREDICTED: pentatricopeptide repeat-cont | 0.939 | 0.956 | 0.567 | 0.0 | |
| 449448456 | 860 | PREDICTED: pentatricopeptide repeat-cont | 0.936 | 0.958 | 0.531 | 0.0 | |
| 357476491 | 877 | Pentatricopeptide repeat-containing prot | 0.938 | 0.941 | 0.541 | 0.0 | |
| 334188692 | 798 | delayed greening 1 protein [Arabidopsis | 0.770 | 0.849 | 0.621 | 0.0 | |
| 297797625 | 621 | EMB1408 [Arabidopsis lyrata subsp. lyrat | 0.654 | 0.927 | 0.631 | 0.0 | |
| 224097262 | 504 | predicted protein [Populus trichocarpa] | 0.568 | 0.992 | 0.696 | 0.0 | |
| 357121315 | 858 | PREDICTED: pentatricopeptide repeat-cont | 0.775 | 0.794 | 0.492 | 0.0 | |
| 242040507 | 872 | hypothetical protein SORBIDRAFT_01g03160 | 0.907 | 0.916 | 0.448 | 0.0 | |
| 115463141 | 874 | Os05g0315100 [Oryza sativa Japonica Grou | 0.921 | 0.927 | 0.441 | 0.0 |
| >gi|255568609|ref|XP_002525278.1| GTP binding protein, putative [Ricinus communis] gi|223535436|gb|EEF37106.1| GTP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/858 (57%), Positives = 614/858 (71%), Gaps = 50/858 (5%)
Query: 27 EIQKHNRKQAKIQSQAQLSPSQQQALAEEQHFQTLKREFKMFRRAVAAKSGDP----LVG 82
+IQKHNRK K+ SQAQL+ SQ+QALAEE HFQTL E++ F +A+ ++ LVG
Sbjct: 177 QIQKHNRKITKV-SQAQLTASQKQALAEESHFQTLTSEYRTFTKAIKGETRSSTSGLLVG 235
Query: 83 KPWERIERLKFRQLASESKEFAGDNLKRENLRELKEMFEKDLNWVLDDDVQL--GSDYFA 140
+PWERIER+K R++ S S +F G+ L E+LRELKE FE LNWVLD+D++L D+ +
Sbjct: 236 RPWERIERVKLREIVSGSNQFNGNKLNVESLRELKENFEDGLNWVLDNDIELENNDDWLS 295
Query: 141 KNVEWH--PEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLK 198
+W P KR R++ E IR LVDRLS+R++T ++WK +IM QSGL F+EGQ++K+++
Sbjct: 296 SENQWQYDPAKRRRNDKEEIRFLVDRLSKRDVTVRDWKLAKIMKQSGLRFSEGQLMKIVE 355
Query: 199 GLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDC 258
GLG+KG W QAM+V++WVY K++RD KSRFVYTKLL++L RP EALRIFN M ED
Sbjct: 356 GLGNKGKWEQAMAVVEWVYNDKERRDSKSRFVYTKLLSVLRIERRPKEALRIFNSMREDH 415
Query: 259 NLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYN 318
NLYPD+AAYH +AVTLGQ G LKEL+K++E M+Q+PSKRI M K WDPVLEPD+V+YN
Sbjct: 416 NLYPDMAAYHVIAVTLGQAGNLKELLKIVECMKQQPSKRINKMCYKRWDPVLEPDIVIYN 475
Query: 319 AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKS 378
AVLNACVP+ QWKGV WVF+QLRKSGLKP+ ATYGLAMEVML SGKYDLVHE FRKM +S
Sbjct: 476 AVLNACVPTQQWKGVAWVFEQLRKSGLKPNGATYGLAMEVMLNSGKYDLVHELFRKMNRS 535
Query: 379 GEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA 438
GEA ALTYKVLVRAFWEEGK+NEA+ AVR+ME RGVVGTAS+YYELACCLC G WQDA
Sbjct: 536 GEAPKALTYKVLVRAFWEEGKVNEAMEAVRDMENRGVVGTASLYYELACCLCYYGMWQDA 595
Query: 439 MLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 498
ML V+K+K+LRHSKPLE+TFTGLI+SS+DGGH+ DCISIF++MK +C PNIGT+N MLKV
Sbjct: 596 MLEVKKMKNLRHSKPLEVTFTGLIMSSLDGGHVSDCISIFEYMKAYCVPNIGTINIMLKV 655
Query: 499 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEY 558
Y RND+FSKAKELF E N+ DG L PDE+TYSSMLEASA+A QWEYFE
Sbjct: 656 YGRNDLFSKAKELFGEIKGTNN--------DGTYLVPDEFTYSSMLEASASALQWEYFEL 707
Query: 559 VYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAI 618
VYK M G QLDQ KHA LLVEASR GK HLLEHAFD+ LEAGEIPH L FTEM+ QA
Sbjct: 708 VYKEMTFCGYQLDQKKHASLLVEASRVGKYHLLEHAFDAALEAGEIPHHLLFTEMVFQAT 767
Query: 619 VQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEI 678
Q NYE+AV L+N +A APF I+E+QW +LF+ N D+I++D LEKLL+AL + + A SE
Sbjct: 768 AQQNYERAVVLVNTLALAPFKISEKQWIDLFQKNGDKITQDGLEKLLDALRSSDVA-SEP 826
Query: 679 TVSNLSRALHALCRSEKERDLSSSAHFGSQAIDISPLHGIHEAFDVKETENVPSSSASMM 738
TV+NLSR LH+LC + LS S G DV + + S S +M
Sbjct: 827 TVANLSRTLHSLCGRGRSEYLSGSTSLG---------------IDVTNSSYLDSGSRKIM 871
Query: 739 FENA-DLGADPLPQKTDVAVDIDSINHSSLSRQADADT-EMFSKALSYIHSNDRPSNLCI 796
+ ++ D L KTD+A S+ S+ + DT E S +Y D +++C
Sbjct: 872 GDKGPEMHEDTLIDKTDIAYGDLSVTRSNTGGEGSDDTDEASSSPRNYSTDRDGIASICT 931
Query: 797 DMEGLADDWASSEHSDYLDKELAALYLSKQSQDNDVVDLQKSMNRVGGSRRSELPSASEI 856
+++ DD AS +D L D D ++ +N+V S ++LPSA EI
Sbjct: 932 NVKIFGDDEASGASTDCL--------------DFDEMEYGIPINQVDDSCGTKLPSADEI 977
Query: 857 LEAWKESREKDGIFFPFE 874
L+ WKESR K +FFPF+
Sbjct: 978 LDIWKESR-KGRLFFPFQ 994
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565493|ref|XP_003550974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 934 bits (2415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/873 (56%), Positives = 619/873 (70%), Gaps = 46/873 (5%)
Query: 2 EKIKQKLLKHGVFPTPKILRSIRKKEIQKHNRKQAKIQSQAQLSPSQQQALAEEQHFQTL 61
+KI+++L++ GV PTPKI+ ++RKKEIQKHNRK K Q L+ +Q QA AEEQH +T+
Sbjct: 21 DKIRRRLIEKGVQPTPKIVHTLRKKEIQKHNRK-LKAQPAPPLTQAQAQAAAEEQHLETI 79
Query: 62 KREFKMFRRAVAAKSGDPLVGKPWERIERLKFRQLA--SESKEFAGDNLKRENLRELKEM 119
KREF RR +A GKPWE I++++F + A E G+ L+RE+L ELKEM
Sbjct: 80 KREF---RRVMA--------GKPWEGIQKVEFLEKARRPERDCGGGEKLRRESLTELKEM 128
Query: 120 FE----KDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNW 175
FE +L WV D D+++ +F + + + RSE E IR LV RLS++E+T K+W
Sbjct: 129 FEARKMDELKWVFDADLEIDEVWFDEGYGARGKTQKRSEVEVIRFLVHRLSDKEITMKDW 188
Query: 176 KFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235
KF R+M SGL FTEGQ+L++++ LG K W+QA+SV+ WVY KD R +SRFVYTKLL
Sbjct: 189 KFSRMMKMSGLPFTEGQLLRIVELLGFKRCWKQALSVVQWVYNYKDHRKFQSRFVYTKLL 248
Query: 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPS 295
++LGKAGRP+EAL+IFN+M E ++YPDIAAYHSVAVTLGQ GLLKEL+ ++E MRQKP
Sbjct: 249 SVLGKAGRPNEALQIFNMMRESIHIYPDIAAYHSVAVTLGQAGLLKELLNIVECMRQKPK 308
Query: 296 KRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLA 355
MHRKNWDPVLEPD+V+YNAVLNACVPS QWKGV WVFKQLRKSGLKP+ ATYGLA
Sbjct: 309 AF---MHRKNWDPVLEPDVVIYNAVLNACVPSKQWKGVSWVFKQLRKSGLKPNGATYGLA 365
Query: 356 MEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGV 415
MEVML+SG YDLVHEFF KM +SGE ALTYKVLV+ FW+EGK+NEAV AVR+ME+RGV
Sbjct: 366 MEVMLESGNYDLVHEFFGKMKRSGEVPKALTYKVLVKTFWKEGKVNEAVKAVRDMERRGV 425
Query: 416 VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCI 475
+GTASVYYELACCLCNNGRWQDA+L V+ I+SL H+KPLE+TFTG+I SSMDGGHI+DCI
Sbjct: 426 IGTASVYYELACCLCNNGRWQDAILEVDNIRSLPHAKPLEVTFTGMIKSSMDGGHINDCI 485
Query: 476 SIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP 535
IF++MK+HC PNIG +N MLKVY +NDMFSKAK LFEE A S Y G + + P
Sbjct: 486 CIFEYMKEHCVPNIGAINTMLKVYGQNDMFSKAKVLFEEVKVAKSEFYATPEGGYSSVVP 545
Query: 536 DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAF 595
D Y+Y+SMLEASATA QWEYFE+VY+ M +SG QLDQ KH LLV+ASRAGK HLLEHAF
Sbjct: 546 DVYSYNSMLEASATAQQWEYFEHVYREMIVSGYQLDQDKHLSLLVKASRAGKLHLLEHAF 605
Query: 596 DSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDR 655
D +LEAGEIPH LFF E++IQAI Q NYE+AV LIN MAYAPF +TE+QWT LF+ +EDR
Sbjct: 606 DMILEAGEIPHHLFFFELVIQAIAQHNYERAVILINTMAYAPFRVTEKQWTNLFKESEDR 665
Query: 656 ISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFGSQAIDISPL 715
IS + LE+LL+AL NC+ SE+TVSNL+R+LH LC R+ SS FGS+ + +
Sbjct: 666 ISLENLERLLDALGNCDIV-SELTVSNLTRSLHVLCGLGTSRNFSSIIPFGSE----NSV 720
Query: 716 HGIHEAFDVKETENVPSSSASMMFENADLGADPLPQKTDVAVDIDSINHSSLSRQADADT 775
+G++E D + NVP S MM E + D L + + + ++ ++D
Sbjct: 721 NGLNEGID--DDGNVPKISRRMMIEGVESKNDILVASYHTEPETIAFSRDQVNGGDNSDV 778
Query: 776 EMFSKALSYIHSNDRPSNLCIDMEGLADDWASSEHSDYLDKELAALYLSKQSQDNDVVDL 835
+F SYI +L D D+ A + SD LD+EL S+ V+D
Sbjct: 779 MVFRPQNSYIEDG---KSLYADSLECTDNLALDKSSDELDEELWDDGSSEDDDGEGVID- 834
Query: 836 QKSMNRVGGSRRSELPSASEILEAWKESREKDG 868
PSA EILE WKE RE+DG
Sbjct: 835 --------------KPSAYEILEVWKEMREEDG 853
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448456|ref|XP_004141982.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like [Cucumis sativus] gi|449499902|ref|XP_004160949.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 922 bits (2384), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/883 (53%), Positives = 632/883 (71%), Gaps = 59/883 (6%)
Query: 2 EKIKQKLLKHGVFPTPKILRSIRKKEIQKHNRKQAKI--QSQAQ---LSPSQQQALAEEQ 56
+KIK+ LL+ GV+PTP+I+RS+RKKEIQK+NRK ++ + AQ LS SQ+Q +AEE
Sbjct: 20 DKIKRMLLQKGVYPTPRIVRSLRKKEIQKYNRKLKRVAERQSAQSPPLSESQKQLIAEET 79
Query: 57 HFQTLKREFKMFRRAVAAK-SGDPLVGKPWERIERLKFRQLASESKEFAGDNLKRENLRE 115
HF TL+ E+K F +A+ AK +G +VG+PWER+ER+ F++L + D+LK+E+LRE
Sbjct: 80 HFLTLRSEYKEFSKAIEAKPAGGLMVGRPWERLERVNFKELTGVRTGYNRDSLKKESLRE 139
Query: 116 LKEMFE----KDLNWVLDDDVQLGSDYF-AKNVEWHPEKRWRSEAEAIRVLVDRLSEREM 170
L+++FE ++ W LDDDV+L ++ ++N + KR R + E IR LVDRLS +
Sbjct: 140 LRKLFETRKLEESQWALDDDVELKEEWLESENDRYDVVKRRRGDGEVIRFLVDRLSSGPI 199
Query: 171 TAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV 230
+ ++WKF R+M +SGL F EGQ+LK+L LG KG W+QA+SV++WVY LK KSRFV
Sbjct: 200 SMRDWKFSRMMIRSGLQFNEGQLLKILDALGAKGCWKQALSVVEWVYNLKSHSHSKSRFV 259
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
YTKLLA+LG A +P EAL+IFNLM D +YPD+AAYHS+AVTLGQ GLLK+L+K+IE M
Sbjct: 260 YTKLLAVLGMARKPQEALQIFNLMRGDGQIYPDMAAYHSIAVTLGQAGLLKQLLKVIEFM 319
Query: 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350
RQ+PSK+++N RK+WDP +EPDLV+YNA+LNAC+P+ +WKGV+WVF QLRKSGL+P+ A
Sbjct: 320 RQQPSKKVRNKCRKSWDPAVEPDLVIYNAILNACIPTLEWKGVYWVFTQLRKSGLRPNGA 379
Query: 351 TYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNM 410
TYGL+MEVML+SGKY+ +H F KM K+G+ + A TY+VLV+AFWEEG +N A+ AVR+M
Sbjct: 380 TYGLSMEVMLKSGKYEQLHNLFTKMKKNGQTLKANTYRVLVKAFWEEGNVNGAIEAVRDM 439
Query: 411 EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH 470
EQRGVVG+ASVYYELACCLC NG+WQDA++ VEK+K+L H KPL +TFTG+I SS +GGH
Sbjct: 440 EQRGVVGSASVYYELACCLCYNGKWQDALVEVEKMKTLSHMKPLVVTFTGMISSSFNGGH 499
Query: 471 IDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDG 530
IDDCISIF++MK C PNIGT+N MLKVY RNDM+SKAK+LFEE R S S D
Sbjct: 500 IDDCISIFEYMKQICAPNIGTINTMLKVYGRNDMYSKAKDLFEEIKRKADSS----SHDS 555
Query: 531 A--PLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 588
A L PDEYTY+SMLEA+A++ QWEYFE VY+ MALSG QLDQ+KHA LLVEAS+AGK
Sbjct: 556 AVPSLVPDEYTYASMLEAAASSLQWEYFESVYREMALSGYQLDQSKHALLLVEASKAGKW 615
Query: 589 HLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTEL 648
+LL+HAFD++LEAG+IPHPL FTEM++Q Q NYE+AV L+ M YAPF ++ERQWTEL
Sbjct: 616 YLLDHAFDTILEAGQIPHPLLFTEMILQLTTQDNYEQAVTLVRTMGYAPFQVSERQWTEL 675
Query: 649 FESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFGSQ 708
FE N DRI R+ L++LL+AL +C+A SE TVSNLSR+L +LC+ + + S S
Sbjct: 676 FEGNTDRIRRNNLKQLLHALGDCDA--SEATVSNLSRSLQSLCKFDIPENTSQSV----- 728
Query: 709 AIDISPLHGIHEAFDVKETENVPSSSASMMFENADLGADPLPQKTDVAVDIDSINHSSLS 768
A D H + + ++EN+ EN L D D ++DI ++H+SL+
Sbjct: 729 ACD----HDATDELQLPDSENM---------ENMKLHPD-----EDESLDIIPVDHASLN 770
Query: 769 RQADADTEMFSKALSYIHSNDRPSNLCIDMEGLADDWASSEHSDYLDKELAALYLSKQSQ 828
+ +++++M P ++ I L + + SD + + L +S+
Sbjct: 771 MKVNSESKM------------SPWSVSISDGAL----GTGQFSDGSNNVHSPFDLCGESE 814
Query: 829 DNDVVDLQKSMNRVGGSRRSELPSASEILEAWKESREKDGIFF 871
D D +L ++ + S LP+ +EILE WKE R+ DG+F
Sbjct: 815 D-DEEELNTLLDEFDDAYDSNLPAVNEILETWKEERKADGLFL 856
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357476491|ref|XP_003608531.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355509586|gb|AES90728.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 917 bits (2370), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/882 (54%), Positives = 609/882 (69%), Gaps = 56/882 (6%)
Query: 2 EKIKQKLLKHGVFPTPKILRSIRKKEIQKHNRKQAKIQSQAQLSP----SQQQALAEEQH 57
+KI++ L++ GV PTPKI+ ++RKK+IQKHNRK + Q QL+P SQ+Q L EEQH
Sbjct: 25 DKIRRSLIQKGVTPTPKIIHTLRKKQIQKHNRK---LNRQNQLNPPLSKSQKQTLEEEQH 81
Query: 58 FQTLKREFKMFRRAV----AAKSGDPLVGKPWERIERLKFRQLASESKEFAGDNLKRENL 113
FQ LK E+K F + + G L+GKPWE +E++ F + + E G+ LKRE+L
Sbjct: 82 FQELKHEYKQFTQNLEENQGGNKGLCLIGKPWEGVEKVDFLERIKVNYEHRGEKLKRESL 141
Query: 114 RELKEMFEK----DLNWVLDDDVQLGSDYFAKNVEWHPEKRW-RSEAEAIRVLVDRLSER 168
ELKEMF + +L WV +DD+++ +F +N +K RSE + +R LVDRL ++
Sbjct: 142 IELKEMFRERKMDELKWVFEDDIEINEVWFDENNNGKRKKTSKRSEVQVVRFLVDRLCDK 201
Query: 169 EMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSR 228
E+ AK+WKF R+M SGL FTEGQ++ +++ LG K W+QA+SV+ WVY KD R +SR
Sbjct: 202 EIRAKDWKFSRLMKLSGLSFTEGQLMMIIEMLGVKRCWKQALSVVQWVYNSKDHRKFQSR 261
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIE 288
FVYTKLLA+LGKA RP EAL+IFN+ML + +YPD+AAYHS+AVTLGQ GLLKEL+ ++E
Sbjct: 262 FVYTKLLAVLGKARRPKEALQIFNMMLGNIRVYPDMAAYHSIAVTLGQAGLLKELLNIVE 321
Query: 289 RMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS 348
MRQKP + +K M+RKNWDP LEPD+V+YNAVLNACVPS QWKGV WVF+Q+RKS LKP+
Sbjct: 322 CMRQKP-ETLKYMYRKNWDPTLEPDVVIYNAVLNACVPSKQWKGVSWVFQQMRKSSLKPN 380
Query: 349 AATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVR 408
ATYGLAMEVMLQSG YDLVHE F KM ++GE ALTYKV+VR FW+EGK++EAV AVR
Sbjct: 381 GATYGLAMEVMLQSGNYDLVHELFEKMQRNGEVPEALTYKVMVRTFWKEGKVDEAVKAVR 440
Query: 409 NMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDG 468
+ME+RGV+GTASVYYELACCLCN GRWQDA L VEKIK L H+KPLE+TFTG+I SSMDG
Sbjct: 441 DMERRGVMGTASVYYELACCLCNCGRWQDATLEVEKIKRLPHAKPLEVTFTGMIRSSMDG 500
Query: 469 GHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSG 528
GHIDDCI IF++M+DHC PN+GTVN MLKVYS+NDMFS AK LFEE A S
Sbjct: 501 GHIDDCICIFEYMQDHCAPNVGTVNTMLKVYSQNDMFSTAKVLFEEVKVAKSD------- 553
Query: 529 DGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 588
L+PD YTY+ MLEAS+ HQWEYFE+VYK M LSG LDQ KH LLV+ASRAGK
Sbjct: 554 ----LRPDAYTYNLMLEASSRGHQWEYFEHVYKEMILSGYHLDQNKHLPLLVKASRAGKL 609
Query: 589 HLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTEL 648
HLLEHAFD +LEAGEIPH LFF E++IQAI Q NYE+A+ L++ MA+AP+ +TE+QWTEL
Sbjct: 610 HLLEHAFDMVLEAGEIPHHLFFFELVIQAIAQHNYERAIILLSTMAHAPYRVTEKQWTEL 669
Query: 649 FESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFGSQ 708
F+ NEDRI+ + L++LL+ L NCN SE T+SNLSR+LH LC R++SS F S+
Sbjct: 670 FKENEDRINHENLKRLLDDLGNCNVV-SEATISNLSRSLHDLCGLGSSRNISSIIPFRSE 728
Query: 709 AIDISPLHGIHEAFDVKETENVPSSSASMMFENADLGADPLPQKTDVAVDIDSINHSSLS 768
+D ++E + E P+ S MM E A+ G D L D+ + N +
Sbjct: 729 NVDC-----LNETINGGENGKAPNFSGRMMIEGAESGNDILFGGDQAEPDMFTFNDDQVD 783
Query: 769 RQADADTEMFSKALSYIHSNDRPSNLCIDMEGLADDWASSEHSDYLDKELAALYLSKQSQ 828
R + D + I S+ C+D ++LD+ L L K S
Sbjct: 784 RVNNNDVVVCRPQNRVIEDK---SSFCVD------------RPEFLDR----LTLDKSSD 824
Query: 829 DNDVVDLQKSMNRVGGSRRSEL---PSASEILEAWKESREKD 867
D++ E+ PSA +ILEAWKE RE+D
Sbjct: 825 DSEDELSDDESYEDDDDGDKEVIDKPSAYQILEAWKEMREED 866
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334188692|ref|NP_201558.3| delayed greening 1 protein [Arabidopsis thaliana] gi|223635752|sp|Q9FJW6.2|PP451_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g67570, chloroplastic; AltName: Full=Protein DELAYED GREENING 1; AltName: Full=Protein EMBRYO DEFECTIVE 1408; Flags: Precursor gi|332010978|gb|AED98361.1| delayed greening 1 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/698 (62%), Positives = 547/698 (78%), Gaps = 20/698 (2%)
Query: 1 MEKIKQKLLKHGVFPTPKILRSIRKKEIQKHNRKQAK-IQSQAQL-SPSQQQALAEEQHF 58
MEKIK++LLK+GV PTPKIL ++RKKEIQKHNR+ + +S+A++ + +Q+Q++ EE F
Sbjct: 23 MEKIKRRLLKYGVDPTPKILNNLRKKEIQKHNRRTKRETESEAEVYTEAQKQSMEEEARF 82
Query: 59 QTLKREFKMFRRAVAAKSGDP---LVGKPWERIERLKFRQLAS--ESKEFAGDNLKRENL 113
QTL+RE+K F R+++ K G +VG PWE IER+K ++L S +E + LK+ENL
Sbjct: 83 QTLRREYKQFTRSISGKRGGDVGLMVGNPWEGIERVKLKELVSGVRREEVSAGELKKENL 142
Query: 114 RELKEMFEKDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAK 173
+ELK++ EKDL WVLDDDV + K E+ P KRWR+E EA+RVLVDRLS RE+ K
Sbjct: 143 KELKKILEKDLRWVLDDDVDVEEFDLDK--EFDPAKRWRNEGEAVRVLVDRLSGREINEK 200
Query: 174 NWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233
+WKFVR+MNQSGL FTE QMLK++ LG K SW+QA +V+ WVY K ++ L+SRFVYTK
Sbjct: 201 HWKFVRMMNQSGLQFTEDQMLKIVDRLGRKQSWKQASAVVHWVYSDKKRKHLRSRFVYTK 260
Query: 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293
LL++LG A RP EAL+IFN ML D LYPD+AAYH +AVTLGQ GLLKEL+K+IERMRQK
Sbjct: 261 LLSVLGFARRPQEALQIFNQMLGDRQLYPDMAAYHCIAVTLGQAGLLKELLKVIERMRQK 320
Query: 294 PSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353
P+K KN+ +KNWDPVLEPDLVVYNA+LNACVP+ QWK V WVF +LRK+GL+P+ ATYG
Sbjct: 321 PTKLTKNLRQKNWDPVLEPDLVVYNAILNACVPTLQWKAVSWVFVELRKNGLRPNGATYG 380
Query: 354 LAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQR 413
LAMEVML+SGK+D VH+FFRKM SGEA A+TYKVLVRA W EGKI EAV AVR+MEQ+
Sbjct: 381 LAMEVMLESGKFDRVHDFFRKMKSSGEAPKAITYKVLVRALWREGKIEEAVEAVRDMEQK 440
Query: 414 GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDD 473
GV+GT SVYYELACCLCNNGRW DAML V ++K L + +PLEITFTGLI +S++GGH+DD
Sbjct: 441 GVIGTGSVYYELACCLCNNGRWCDAMLEVGRMKRLENCRPLEITFTGLIAASLNGGHVDD 500
Query: 474 CISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL 533
C++IFQ+MKD C+PNIGT N MLKVY RNDMFS+AKELFEE +S L
Sbjct: 501 CMAIFQYMKDKCDPNIGTANMMLKVYGRNDMFSEAKELFEE----------IVSRKETHL 550
Query: 534 KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEH 593
P+EYTYS MLEASA + QWEYFE+VY+ M LSG Q+DQTKHA +L+EASRAGK LLEH
Sbjct: 551 VPNEYTYSFMLEASARSLQWEYFEHVYQTMVLSGYQMDQTKHASMLIEASRAGKWSLLEH 610
Query: 594 AFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNE 653
AFD++LE GEIPHPLFFTE+L A + ++++A+ LIN +A A F I+E +WT+LFE ++
Sbjct: 611 AFDAVLEDGEIPHPLFFTELLCHATAKGDFQRAITLINTVALASFQISEEEWTDLFEEHQ 670
Query: 654 DRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALC 691
D +++D L KL + L C+ SE TVSNLS++L + C
Sbjct: 671 DWLTQDNLHKLSDHLIECDYV-SEPTVSNLSKSLKSRC 707
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797625|ref|XP_002866697.1| EMB1408 [Arabidopsis lyrata subsp. lyrata] gi|297312532|gb|EFH42956.1| EMB1408 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/595 (63%), Positives = 475/595 (79%), Gaps = 19/595 (3%)
Query: 1 MEKIKQKLLKHGVFPTPKILRSIRKKEIQKHNRKQAK-IQSQAQL-SPSQQQALAEEQHF 58
MEKIK++LLK+GV PTPKIL ++RKKEIQKHNR+ + +S+A++ + +Q+Q++ EE F
Sbjct: 23 MEKIKRRLLKYGVDPTPKILNNLRKKEIQKHNRRTKRETESEAEVYTEAQKQSMEEEARF 82
Query: 59 QTLKREFKMFRRAVAAKSGDP---LVGKPWERIERLKFRQLAS--ESKEFAGDNLKRENL 113
QTL+RE+K F R+++ KSG +VG PWE IER+K ++L S +E +G LK+ENL
Sbjct: 83 QTLRREYKQFTRSISGKSGGDVGLMVGNPWEGIERVKLKELVSGVRREEVSGGELKKENL 142
Query: 114 RELKEMFEKDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAK 173
+ELK++ EKDL WVL+DDV + + + + E+ P KRWR+E EA+RVLVDRLS RE+T K
Sbjct: 143 KELKKILEKDLRWVLEDDVDV--EEYDLDKEFDPAKRWRTEGEAVRVLVDRLSGREITEK 200
Query: 174 NWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233
+WKFVRIMNQSGL F+E QMLK++ LG K SW+QA +V+ WVY K ++ +SRFVYTK
Sbjct: 201 HWKFVRIMNQSGLQFSEDQMLKIVDRLGRKNSWKQASAVVHWVYSDKKRKHNRSRFVYTK 260
Query: 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293
LL++LG A RP EAL+IF+ ML D LYPD+AAYHS+AVTLGQ GLLKEL+K+IE MRQK
Sbjct: 261 LLSVLGFARRPKEALQIFSEMLGDRQLYPDMAAYHSIAVTLGQAGLLKELLKVIEHMRQK 320
Query: 294 PSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353
P+K +KN+ ++NWD VLEPDLVVYNA+LNACVP+ QWK V WVF +LRK+GL+P+ ATYG
Sbjct: 321 PTKLMKNLRQRNWDHVLEPDLVVYNAILNACVPTLQWKAVSWVFVELRKNGLRPNGATYG 380
Query: 354 LAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQR 413
LAMEVML+SGKYD VH+FFRKM SGEA A+TYKVLVRA W EGKI EAV AVR+MEQ+
Sbjct: 381 LAMEVMLESGKYDRVHDFFRKMKSSGEAPKAITYKVLVRALWREGKIEEAVEAVRDMEQK 440
Query: 414 GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDD 473
GV+GT SVYYELACCLCNNGRW+DAML V ++K L + +PLEITFTGLI +S++GGH+DD
Sbjct: 441 GVIGTGSVYYELACCLCNNGRWRDAMLEVGRMKRLENCRPLEITFTGLIAASLNGGHVDD 500
Query: 474 CISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL 533
C++IFQ+MKD C+PNIGT N ML+VY RNDMFS+AKELFEE +S L
Sbjct: 501 CMAIFQYMKDKCDPNIGTANMMLRVYGRNDMFSEAKELFEE----------IVSRKETHL 550
Query: 534 KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 588
P+EYTY+ MLEASA + QWEYFE+VY+ M LSG Q+DQ KHA +L+EASRAGK
Sbjct: 551 VPNEYTYNFMLEASARSLQWEYFEHVYQLMILSGYQMDQAKHASMLIEASRAGKV 605
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097262|ref|XP_002310894.1| predicted protein [Populus trichocarpa] gi|222853797|gb|EEE91344.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/511 (69%), Positives = 418/511 (81%), Gaps = 11/511 (2%)
Query: 80 LVGKPWERIERLKFRQLASESKEFAGDNLKRENLRELKEMFEKDLNWVLDDDVQLGSDYF 139
LVGKPWERIER+K +++ S S+EF G LKRENLR+LKE+FE +L WV DDD+ + +
Sbjct: 1 LVGKPWERIERVKLKEIGSGSREFNGGKLKRENLRQLKEVFEGNLKWVFDDDIDVEDSDW 60
Query: 140 AKNV---EWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKL 196
++ +W P KRWR E EAIR LVDRLS RE++ K+WK +IM QSGL F+EGQ+LK+
Sbjct: 61 LRSGSEEKWDPAKRWRGEGEAIRFLVDRLSCREVSVKDWKLAKIMKQSGLRFSEGQLLKI 120
Query: 197 LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE 256
++ LG+KG W QAM+V++WVY K++RD KSRFVYTKLL++LGK R EAL IFNLM E
Sbjct: 121 VEELGNKGKWSQAMAVVEWVYNDKERRDCKSRFVYTKLLSVLGKERRAQEALSIFNLMRE 180
Query: 257 DCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVV 316
D +YPD+AAYHS+AVTLGQ GLLKELVK+IE MRQKPSKRI M KNWDPVLEPDLV+
Sbjct: 181 DRRIYPDMAAYHSIAVTLGQTGLLKELVKVIECMRQKPSKRINKMLNKNWDPVLEPDLVI 240
Query: 317 YNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMA 376
YNA+LNACVPS QWKGV WVF+QLR+SGLKP+ ATYGLAMEVML SGKY VHE+FRKM
Sbjct: 241 YNAILNACVPSQQWKGVSWVFQQLRRSGLKPNGATYGLAMEVMLLSGKYKSVHEYFRKMK 300
Query: 377 KSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQ 436
KSGE++ ALTYKVLVRAFWEEG++NEAV AVR+MEQRGVVG ASVYYELACCLC NGRWQ
Sbjct: 301 KSGESLKALTYKVLVRAFWEEGRVNEAVEAVRDMEQRGVVGAASVYYELACCLCYNGRWQ 360
Query: 437 DAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAML 496
DAML VEK+K LR+ KPLE++ TG+I SSMDGGHID+CISIF+HMK HC PNIGT+N ML
Sbjct: 361 DAMLEVEKMKRLRYKKPLEVSLTGMIASSMDGGHIDNCISIFEHMKAHCVPNIGTINTML 420
Query: 497 KVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYF 556
KVYSR+D+FS+AKELFE+ + SG T + PD YTYSSMLE SA A QWEYF
Sbjct: 421 KVYSRSDLFSEAKELFEDIKGVDHSGTTII--------PDGYTYSSMLEVSARALQWEYF 472
Query: 557 EYVYKGMALSGCQLDQTKHAWLLVEASRAGK 587
EYVYK M+ SG QLDQ KHA LLVEASR+GK
Sbjct: 473 EYVYKEMSFSGYQLDQIKHAPLLVEASRSGK 503
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357121315|ref|XP_003562366.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/715 (49%), Positives = 477/715 (66%), Gaps = 33/715 (4%)
Query: 2 EKIKQKLLKHGVFPTPKILRSIRKKEIQKHNRKQAKIQSQAQLSPSQQQALA--EEQHFQ 59
E ++++LL+ GV PTPKIL ++RKKE K R+ K S A P+ + +L EE F+
Sbjct: 34 ETLRRRLLRKGVSPTPKILHTLRKKEAHKSLRRARKDTSTANAPPTTEDSLVAQEEARFR 93
Query: 60 TLKREFKMFRRAVAAKSGDPLVGKPWERIERLKFRQLASESKEFAGDNLKRENLRELKEM 119
E+++ L+G+PW+ AS + E L L+EM
Sbjct: 94 AAAEEYRV------------LMGRPWDG---------ASSASGPPRGTTGNEGLGGLREM 132
Query: 120 FE----KDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEA----EAIRVLVDRLSEREMT 171
E + W+L+DDV+ G A + W SE I +LV RLSE +++
Sbjct: 133 LEARRSDGVRWLLEDDVEKGEADDANRKQRRVGSGWISEVGDEERRIELLVSRLSEGDLS 192
Query: 172 AKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVY 231
+W+ R+M Q+ L++ E +L++LK L +G+WRQA++V +WVY + +SRFVY
Sbjct: 193 LGDWRLSRMMKQADLIYNEDNLLQILKRLETQGNWRQAVAVTEWVYNENTYKHRRSRFVY 252
Query: 232 TKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMR 291
TKLL+ILGK+ P EALR+F +ML D +YPD+AAYHS+AVTLG+ GLL EL+K+I+ MR
Sbjct: 253 TKLLSILGKSLVPTEALRVFKIMLGDAQIYPDMAAYHSIAVTLGRAGLLNELIKIIDYMR 312
Query: 292 QKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAAT 351
QKPSKR+ M RK+WDP+LEPDL++YN+VLNACV S QWKGVFWVFK++R GL P+ AT
Sbjct: 313 QKPSKRVMRMRRKDWDPLLEPDLIIYNSVLNACVLSQQWKGVFWVFKKMRFGGLTPTGAT 372
Query: 352 YGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNME 411
+GLAMEVML++ KYD V +FF KM + G A+TYKVLVRAFWE+GK+NEAV AV +ME
Sbjct: 373 FGLAMEVMLKAKKYDFVQKFFEKMQRKGVPPRAITYKVLVRAFWEQGKVNEAVEAVEDME 432
Query: 412 QRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHI 471
QRG+VG ASVYYELACCLCN G+W++AML VEK++ LR +KPLE FTG+I++S DGG++
Sbjct: 433 QRGIVGAASVYYELACCLCNKGKWKEAMLQVEKLEQLRLTKPLEYVFTGMILASFDGGYM 492
Query: 472 DDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGA 531
+CISIF+ MKD+C PNIGT+N MLKVY R+DMF KAK+LFE TT + SS ++ D +
Sbjct: 493 SECISIFESMKDYCAPNIGTINVMLKVYGRSDMFVKAKDLFETTTCSFSSSQPYIC-DHS 551
Query: 532 PLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLL 591
L+ D YTYSSMLEASA A QWEYFE Y+ M LS LDQ+K++WLL++ASRAGK +LL
Sbjct: 552 TLQADAYTYSSMLEASAHAQQWEYFENAYRRMILSHHHLDQSKYSWLLIKASRAGKPYLL 611
Query: 592 EHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFES 651
EHA +S+L+ GE P FTE + Q I S+Y + + L+N M+ A + E QW++L +
Sbjct: 612 EHALNSILDRGETPDVQLFTENVCQTIAHSDYGRTLCLLNFMSAASVDVNELQWSDLLQQ 671
Query: 652 NEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFG 706
N R S + L+ LL L + + +S RAL + + E+D S A G
Sbjct: 672 NMFRFSVNALKDLLMHLSTGDTIERDPALS-FVRALQSQYATFVEKDTSFLADCG 725
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242040507|ref|XP_002467648.1| hypothetical protein SORBIDRAFT_01g031600 [Sorghum bicolor] gi|241921502|gb|EER94646.1| hypothetical protein SORBIDRAFT_01g031600 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/870 (44%), Positives = 535/870 (61%), Gaps = 71/870 (8%)
Query: 12 GVFPTPKILRSIRKKEIQKHNRKQAK-----IQSQAQLSPSQQQALAEEQHFQTLKREFK 66
GV PTPK+L +IRKKE K R+ K + A L+P ++ AE++
Sbjct: 50 GVSPTPKVLHTIRKKEALKALRRARKDTAAAAAAAASLNPCGEEIGAEDEEEAR------ 103
Query: 67 MFRRAVAAKSGDPLVGKPWERIERLKFRQLASESKEFAGDNLKRENLRELKEMFEKDL-N 125
AA LVG+PW+ R + + + + E LRE+ D+
Sbjct: 104 ---FRAAAAEYRALVGRPWDAGARG-----VAPPRGWDAEEGGLEGLREMLVARRGDVFR 155
Query: 126 WVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEA----IRVLVDRLSEREMTAKNWKFVRIM 181
W+LDDD++ +D + + P W +AE I++LV RL+ ++ ++W+ R+M
Sbjct: 156 WLLDDDIE--ADAAERKQQKRPGTGWDVDAEEEERRIQLLVSRLNGDYLSFRDWRLTRMM 213
Query: 182 NQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKA 241
++ ++++E +L++L GL +G+WRQA++V++WVY R KSRFVYTKLL++LGK+
Sbjct: 214 KKADIIYSEDNLLRILDGLEARGNWRQALAVIEWVYNENSYRHRKSRFVYTKLLSVLGKS 273
Query: 242 GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNM 301
R +EALR+F +M D +YPD+ AYHS+AVTLG+ GLLKEL+K+IE MRQKPSKR+ NM
Sbjct: 274 LRANEALRVFTIMRRDPQIYPDMPAYHSIAVTLGRAGLLKELIKIIEYMRQKPSKRVMNM 333
Query: 302 HRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQ 361
RK WDP LEPD++VYN+VLNACV S QWKGVFWVF+Q+R SGL P+ AT+GLAMEVML+
Sbjct: 334 RRKGWDPSLEPDVLVYNSVLNACVLSQQWKGVFWVFQQMRISGLPPTGATFGLAMEVMLK 393
Query: 362 SGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASV 421
+ KYD V +F+ KM K+G A+TYKVLVRAFWE+GKINEAV AV +MEQRGVVG ASV
Sbjct: 394 AKKYDFVQKFYEKMQKNGVPPRAITYKVLVRAFWEQGKINEAVEAVNDMEQRGVVGAASV 453
Query: 422 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM 481
YYELACCLCNN RW+DAML VEK+K L +KPLE TFTG+I++S +GG+I DCISIF+ M
Sbjct: 454 YYELACCLCNNRRWRDAMLQVEKLKQLPLTKPLEYTFTGMILASFNGGYIYDCISIFESM 513
Query: 482 KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYS 541
KDHC PNIGTVN MLKVY R DMF KAK+LFE T S+ T++ + + LK D YTYS
Sbjct: 514 KDHCTPNIGTVNVMLKVYGRCDMFGKAKDLFETTKACFSNSQTYIH-EHSSLKADTYTYS 572
Query: 542 SMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA 601
SMLEASA+A QWEYFEYVY+ M LS LDQ+K++WLL++A RAGK +LLEHA DS+LE
Sbjct: 573 SMLEASASAQQWEYFEYVYREMVLSHHCLDQSKYSWLLIKACRAGKSNLLEHALDSILER 632
Query: 602 GEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKL 661
GEIP TE++ Q+I +Y + + L+N M A + E +W L + N + + D L
Sbjct: 633 GEIPDVQLITELICQSIAHRDYRRTLQLLNIMTEASIKMKEVEWVYLLQKNVYQFNIDAL 692
Query: 662 EKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFGSQAIDISPLHGIHEA 721
E + L +++ + L RAL + C I+ + G +
Sbjct: 693 EGFIKYLSTSGTINADPAL-GLVRALESQC-------------------GITLVKGPYLL 732
Query: 722 FDVKETENVPSSSASMMFENADLGADPLPQKTDVAVDIDSINHSSLSRQADADTEMFSKA 781
D T+ S + E+ D A K D + +++ + D+D E+
Sbjct: 733 TDDTTTQQCGLS----LLESEDKYASSSLAKQD-QLTCENLCTDIILDVPDSDREIPQFG 787
Query: 782 LSYIHSNDRPSNLCIDMEGLADDWASSEHSDYLDKELAALYLSKQSQDNDVVD-LQKSMN 840
+S + S D + + + L D EHSD L +Q +D + SMN
Sbjct: 788 VSVVMSRD----ISLSGQRLED---KHEHSD----------LGQQRPQVSAIDEVLDSMN 830
Query: 841 RVGGSRRSELPSASEILEAWKESREKDGIF 870
G + E+PSASEILE W++ R +G+F
Sbjct: 831 PYGVNSYEEMPSASEILELWEQER-INGMF 859
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115463141|ref|NP_001055170.1| Os05g0315100 [Oryza sativa Japonica Group] gi|113578721|dbj|BAF17084.1| Os05g0315100 [Oryza sativa Japonica Group] gi|222631083|gb|EEE63215.1| hypothetical protein OsJ_18025 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/884 (44%), Positives = 538/884 (60%), Gaps = 73/884 (8%)
Query: 2 EKIKQKLLKHGVFPTPKILRSIRKKEIQKHNRKQAK-IQSQAQLSPSQQQALAEEQHFQT 60
E ++++LL+ GV PTPKIL ++RKKE K R+ K + A + + AL E+
Sbjct: 37 ETLRRRLLRKGVSPTPKILHALRKKEALKSLRRARKDTAAAAAAAEAASNALPREEDGAA 96
Query: 61 LKREFKMFRRAVAAKSGDPLVGKPWERIERLKFRQLASESKEFAGDNLKRENLRE-LKEM 119
+ E R A L+G+PW A G+ + LRE L
Sbjct: 97 VVGEDDEARFRAAVAEYRALMGRPWHGGAS------APPRGALRGEGEGLDGLREMLAAR 150
Query: 120 FEKDLNWVLDDDVQLGSDYFAK-------NVEWHPEKRWRSEAEAIRVLVDRLSEREMTA 172
W+L+DD + A V W+ + +R E I LV RL+E +++
Sbjct: 151 RAGKFEWLLEDDDVEEGEEEAAVGRRGRAGVGWNSD--FRDEERRIESLVRRLNEDDLSM 208
Query: 173 KNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYT 232
++W+ R+M ++ L++ E +L++L+GL +G+WRQA+SV +WVY + KSRFVYT
Sbjct: 209 RDWRLTRLMKKADLIYNEDNLLQILEGLEARGNWRQALSVTEWVYNENIYKHRKSRFVYT 268
Query: 233 KLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQ 292
KLL+ILGKA RP EALR+F +M D +YPD+AAYHS+AVTLG+ GLL EL+K+IE MRQ
Sbjct: 269 KLLSILGKAWRPTEALRVFTIMRSDAQIYPDMAAYHSIAVTLGRAGLLNELIKIIEYMRQ 328
Query: 293 KPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352
KPSKR+ M RK+WDP LEPD+++YN+VLNACV S QWKGVFWVF+Q+R++ L P+ AT+
Sbjct: 329 KPSKRVMKMRRKDWDPSLEPDVLIYNSVLNACVLSQQWKGVFWVFQQMRRNSLIPTGATF 388
Query: 353 GLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQ 412
GLAMEVML++ KYD V +FF+KM KSG A+TYKVLVRA+WE+GK+NEAV AV++MEQ
Sbjct: 389 GLAMEVMLKAKKYDFVQKFFQKMQKSGVPPRAITYKVLVRAYWEQGKVNEAVEAVKDMEQ 448
Query: 413 RGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHID 472
RG+VG ASVYYELACCLCN GRW+DA+ VEK+K L +KPLE TFTG+I++S DGG+I
Sbjct: 449 RGIVGAASVYYELACCLCNKGRWRDALSQVEKLKQLPLTKPLEFTFTGMILASFDGGYIS 508
Query: 473 DCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAP 532
+CISIF+ M+ HC PNIGT+N M+KVY R DMF KA++LF ET + N S + +
Sbjct: 509 ECISIFESMEGHCAPNIGTINVMIKVYGRCDMFVKARDLF-ETIKVN-----LPSSNHSS 562
Query: 533 LKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLE 592
K D YTYSSMLEA+A+A QWEYFE VY+ M LS LDQ+K++W+L++AS+AGK +LLE
Sbjct: 563 HKADAYTYSSMLEAAASAQQWEYFENVYREMTLSQYHLDQSKYSWMLIKASKAGKSYLLE 622
Query: 593 HAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESN 652
HA DS+LE GE P+ F+EM+ Q I Q NY K + LIN MA A ++E QW++L E N
Sbjct: 623 HALDSILERGETPNVQLFSEMICQTIAQRNYAKTLHLINIMAEASTDVSELQWSKLLEQN 682
Query: 653 EDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSA---HFGSQA 709
R S + L+ LL L + S+ + +S AL + C + D S A + G
Sbjct: 683 MHRFSVNALKDLLKYLSTSDIIKSDPELCFVS-ALQSQCGTTFVNDTSFVADGTYTGQSQ 741
Query: 710 IDISPLHGIHEAFDVKETENVPSSSASMMFENADLGADPLPQKTDVAVDIDSIN-HSSLS 768
+ + EN+ SS S ++D ++ +SL+
Sbjct: 742 LSLP--------------ENITKSSNS---------------------NLDQLSCMNSLN 766
Query: 769 RQADADTEMFSKALSYIHSNDRPSNLCIDMEGLADDWASSEHSDYLDKELAAL--YLSKQ 826
D ++ S+ YI + + GL++D H + KE L +
Sbjct: 767 TNVFPDEKVSSEFSDYIMNTPQSDA----NAGLSEDIVIGSHFESEQKEQHDLGWLGTGV 822
Query: 827 SQDNDVVDLQKSMNRVGGSRRSELPSASEILEAWKESREKDGIF 870
S ++V+D SMN G E+PSASEILE W++ R +G F
Sbjct: 823 SAVDEVLD---SMNLYGDGSCGEMPSASEILELWEQDR-INGTF 862
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 880 | ||||||
| TAIR|locus:2204629 | 1006 | EMB2279 "EMBRYO DEFECTIVE 2279 | 0.4 | 0.349 | 0.402 | 2.7e-66 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.460 | 0.494 | 0.22 | 2.1e-20 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.420 | 0.587 | 0.211 | 1.4e-18 | |
| TAIR|locus:2044430 | 822 | AT2G18940 [Arabidopsis thalian | 0.469 | 0.502 | 0.215 | 1.8e-17 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.405 | 0.677 | 0.228 | 1.9e-16 | |
| TAIR|locus:2061310 | 918 | GUN1 "AT2G31400" [Arabidopsis | 0.305 | 0.293 | 0.215 | 2.6e-16 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.344 | 0.481 | 0.217 | 2.8e-16 | |
| TAIR|locus:2027166 | 862 | PTAC2 "plastid transcriptional | 0.420 | 0.429 | 0.241 | 3e-16 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.328 | 0.458 | 0.212 | 3.4e-15 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.410 | 0.569 | 0.193 | 3.5e-15 |
| TAIR|locus:2204629 EMB2279 "EMBRYO DEFECTIVE 2279" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 2.7e-66, P = 2.7e-66
Identities = 143/355 (40%), Positives = 205/355 (57%)
Query: 89 ERLKFRQLASESKEFAGDNLK-RENLRELKEMFEKDLNWVLDDDVQLGSDYFAKNVEWHP 147
E + +LA+E E L + + + D + ++ SD + V+
Sbjct: 368 EERRIERLANERHEIRSSKLSGTRRIGAKRNDDDDDSLFAMETPAFRFSDESSDIVDKPA 427
Query: 148 EKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMXXXXXXXXXXXSWR 207
R E + I L L+ ++ W+F + + + + +T+ + +WR
Sbjct: 428 TSRVEME-DRIEKLAKVLNGADINMPEWQFSKAIRSAKIRYTDYTVMRLIHFLGKLGNWR 486
Query: 208 QAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267
+ + V++W+ + K R +YT L +LGK+ RP EAL +F+ ML + YPD+ AY
Sbjct: 487 RVLQVIEWLQRQDRYKSNKIRIIYTTALNVLGKSRRPVEALNVFHAMLLQISSYPDMVAY 546
Query: 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPS 327
S+AVTLGQ G +KEL +I+ MR P K+ K + WDP LEPD+VVYNAVLNACV
Sbjct: 547 RSIAVTLGQAGHIKELFYVIDTMRSPPKKKFKPTTLEKWDPRLEPDVVVYNAVLNACVQR 606
Query: 328 HQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTY 387
QW+G FWV +QL++ G KPS TYGL MEVML KY+LVHEFFRKM KS AL Y
Sbjct: 607 KQWEGAFWVLQQLKQRGQKPSPVTYGLIMEVMLACEKYNLVHEFFRKMQKSSIP-NALAY 665
Query: 388 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVV 442
+VLV W+EGK +EAV V +ME RG+VG+A++YY+LA CLC+ GR + + +V
Sbjct: 666 RVLVNTLWKEGKSDEAVHTVEDMESRGIVGSAALYYDLARCLCSAGRCNEGLNMV 720
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 277 (102.6 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 99/450 (22%), Positives = 191/450 (42%)
Query: 209 AMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYH 268
A+ DW KD + + V ++++LGK GR A +FN + ED D+ +Y
Sbjct: 154 ALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQED-GFSLDVYSYT 212
Query: 269 SVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP-S 327
S+ G +E V + ++M + K P L+ YN +LN
Sbjct: 213 SLISAFANSGRYREAVNVFKKMEEDGCK---------------PTLITYNVILNVFGKMG 257
Query: 328 HQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTY 387
W + + ++++ G+ P A TY + + + + F +M +G + +TY
Sbjct: 258 TPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTY 317
Query: 388 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 447
L+ + + + EA+ + M G + Y L +G +AM + ++
Sbjct: 318 NALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAE 377
Query: 448 LRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFS 506
+ +KP T+T L+ G ++ +SIF+ M++ C+PNI T NA +K+Y F+
Sbjct: 378 -KGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFT 436
Query: 507 KAKELFEE--------------TTRA--NSSGY-TFLSGDGAPLK-----PDEYTYSSML 544
+ ++F+E T A +G + +SG +K P+ T+++++
Sbjct: 437 EMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLI 496
Query: 545 EASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEI 604
A + +E VY+ M +G D + + +L +R G E + +
Sbjct: 497 SAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCK 556
Query: 605 PHPLFFTEMLIQAIVQSNYEKAVALINAMA 634
P+ L + +L A K + L++++A
Sbjct: 557 PNELTYCSLL-HAYANG---KEIGLMHSLA 582
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 258 (95.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 83/392 (21%), Positives = 167/392 (42%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHE 370
+P+ V +N +++ ++ + ++ G +P TYG+ + + + G DL
Sbjct: 183 QPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFN 242
Query: 371 FFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 430
KM + G L Y ++ + +++A+ + ME +G+ Y L CLC
Sbjct: 243 LLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLC 302
Query: 431 NNGRWQDAM-LVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPN 488
N GRW DA L+ + I+ R P TF+ LI + + G + + ++ M K +P+
Sbjct: 303 NYGRWSDASRLLSDMIE--RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360
Query: 489 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASA 548
I T ++++ + +D +AK++FE S + F PD TY+++++
Sbjct: 361 IVTYSSLINGFCMHDRLDEAKQMFEFMV----SKHCF---------PDVVTYNTLIKGFC 407
Query: 549 TAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPL 608
+ E V++ M+ G + + L+ +AG C + + F ++ G P+ +
Sbjct: 408 KYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIM 467
Query: 609 FFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNAL 668
+ +L EKA+ + + + T + + E K+E +
Sbjct: 468 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEG---MCKAGKVEDGWDLF 524
Query: 669 CNCNAASSEITVSNLSRALHALCR--SEKERD 698
CN + + V + + CR S++E D
Sbjct: 525 CNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 556
|
|
| TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 250 (93.1 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 97/450 (21%), Positives = 186/450 (41%)
Query: 206 WRQAMSVLDWVYGLKDKRDLK-SRFVYTKLLAILGKAGRPHEALRIFN-LMLEDCNLYPD 263
W +A+ + +W+ + LK V + ILG+ + A ++ + + L++ L D
Sbjct: 152 WERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLL--D 209
Query: 264 IAAYHSVAVTLGQVGLLKELVKLIERMRQK-PSKRIKNMHRKNWDPVLEPDLVVYNAVLN 322
+ AY ++ + G ++ + L ERM++ PS P LV YN +L+
Sbjct: 210 VRAYTTILHAYSRTGKYEKAIDLFERMKEMGPS----------------PTLVTYNVILD 253
Query: 323 ACVP-SHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEA 381
W+ + V ++R GLK T + + G EFF ++ G
Sbjct: 254 VFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYE 313
Query: 382 IGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLV 441
G +TY L++ F + G EA++ ++ ME+ + Y EL G ++A V
Sbjct: 314 PGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGV 373
Query: 442 VEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYS 500
+E + + P IT+T +I + G D+ + +F MK+ C PN T NA+L +
Sbjct: 374 IEMMTK-KGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLG 432
Query: 501 RNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVY 560
+ S++ E+ + S+G + P+ T+++ML ++ V+
Sbjct: 433 KK---SRSNEMIKMLCDMKSNGCS----------PNRATWNTMLALCGNKGMDKFVNRVF 479
Query: 561 KGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQ 620
+ M G + D+ L+ R G + + AG + +L +
Sbjct: 480 REMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARK 539
Query: 621 SNYEKAVALINAMAYAPFHITERQWTELFE 650
++ +I+ M F TE ++ + +
Sbjct: 540 GDWRSGENVISDMKSKGFKPTETSYSLMLQ 569
|
|
| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 88/385 (22%), Positives = 160/385 (41%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
+T L+ R EA+ + N M+E + PD+ Y ++ +L + G + + L ++M
Sbjct: 145 FTSLINGFCLGNRMEEAMSMVNQMVE-MGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQM 203
Query: 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350
+N+ + PD+V+Y +++N S +W+ + + + K +KP
Sbjct: 204 -------------ENYG--IRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVI 248
Query: 351 TYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNM 410
T+ ++ ++ GK+ E + +M + A TY L+ F EG ++EA M
Sbjct: 249 TFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLM 308
Query: 411 EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH 470
E +G Y L C + DAM + ++ S + IT+T LI G
Sbjct: 309 ETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEM-SQKGLTGNTITYTTLIQGFGQVGK 367
Query: 471 IDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGD 529
+ +F HM PNI T N +L N KA +FE+ + G
Sbjct: 368 PNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDG------- 420
Query: 530 GAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCH 589
+ P+ +TY+ +L + E V++ M + + ++ +AGK
Sbjct: 421 ---VAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVK 477
Query: 590 LLEHAFDSLLEAGEIPHPLFFTEML 614
+ F SL G P+ + +T M+
Sbjct: 478 NAVNLFCSLPSKGVKPNVVTYTTMI 502
|
|
| TAIR|locus:2061310 GUN1 "AT2G31400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 240 (89.5 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 62/288 (21%), Positives = 134/288 (46%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGL-LKELVKLI 287
+ ++ L++ G++G EA+ +FN M E L P++ Y++V G+ G+ K++ K
Sbjct: 269 YAFSALISAYGRSGLHEEAISVFNSMKE-YGLRPNLVTYNAVIDACGKGGMEFKQVAKFF 327
Query: 288 ERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347
+ M++ ++PD + +N++L C W+ +F ++ ++
Sbjct: 328 DEMQRNG---------------VQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQ 372
Query: 348 SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAV 407
+Y ++ + + G+ DL E +M ++Y ++ F + G+ +EA+
Sbjct: 373 DVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLF 432
Query: 408 RNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD 467
M G+ Y L GR ++A+ ++ ++ S+ K + +T+ L+
Sbjct: 433 GEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDV-VTYNALLGGYGK 491
Query: 468 GGHIDDCISIFQHMK-DHCEPNIGTVNAMLKVYSRNDMFSKAKELFEE 514
G D+ +F MK +H PN+ T + ++ YS+ ++ +A E+F E
Sbjct: 492 QGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFRE 539
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 2.8e-16, P = 2.8e-16
Identities = 70/322 (21%), Positives = 144/322 (44%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHE 370
+P+ V +N +++ ++ + ++ G +P TYG + + + G DL
Sbjct: 182 QPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALS 241
Query: 371 FFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 430
+KM K + Y ++ A +N+A+ M+ +G+ Y L CLC
Sbjct: 242 LLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 301
Query: 431 NNGRWQDAM-LVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPN 488
N GRW DA L+ + I+ R P +TF+ LI + + G + + ++ M K +P+
Sbjct: 302 NYGRWSDASRLLSDMIE--RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 359
Query: 489 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASA 548
I T ++++ + +D +AK +FE +S D P+ TY+++++
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMFE----------LMISKD---CFPNVVTYNTLIKGFC 406
Query: 549 TAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPL 608
A + E +++ M+ G + + L+ +AG C + + F ++ G +P +
Sbjct: 407 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG-VPPDI 465
Query: 609 FFTEMLIQAIVQ-SNYEKAVAL 629
+L+ + + EKA+ +
Sbjct: 466 ITYSILLDGLCKYGKLEKALVV 487
|
|
| TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 252 (93.8 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 98/406 (24%), Positives = 174/406 (42%)
Query: 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKE-LV 284
+S F YT L+ G+ GR +L + + M + + P I Y++V + GL E L+
Sbjct: 174 RSVFSYTALINAYGRNGRYETSLELLDRMKNE-KISPSILTYNTVINACARGGLDWEGLL 232
Query: 285 KLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344
L MR + ++PD+V YN +L+AC VF+ + G
Sbjct: 233 GLFAEMRHEG---------------IQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGG 277
Query: 345 LKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAV 404
+ P TY +E + + + V + +MA G +Y VL+ A+ + G I EA+
Sbjct: 278 IVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAM 337
Query: 405 AAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS 464
M+ G A+ Y L +GR+ D + ++KS ++ P T+ LI
Sbjct: 338 GVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKS-SNTDPDAATYNILIEV 396
Query: 465 SMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGY 523
+GG+ + +++F M +++ EP++ T ++ + + A+++ + T AN
Sbjct: 397 FGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMT-AND--- 452
Query: 524 TFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEA 582
+ P Y+ ++EA A +E + M G +T H+ LL
Sbjct: 453 ---------IVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHS-LLYSF 502
Query: 583 SRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSN-YEKAV 627
+R G E L+++G IP I+A Q +E+AV
Sbjct: 503 ARGGLVKESEAILSRLVDSG-IPRNRDTFNAQIEAYKQGGKFEEAV 547
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 227 (85.0 bits), Expect = 3.4e-15, P = 3.4e-15
Identities = 65/306 (21%), Positives = 138/306 (45%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHE 370
+PD +N +++ ++ + ++ G +P TYG+ + + + G DL
Sbjct: 183 QPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALS 242
Query: 371 FFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 430
+KM + G + Y ++ A +N+A+ M+ +G+ Y L CLC
Sbjct: 243 LLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 302
Query: 431 NNGRWQDAM-LVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPN 488
N GRW DA L+ + I+ R P +TF+ LI + + G + + ++ M K +P+
Sbjct: 303 NYGRWSDASRLLSDMIE--RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 360
Query: 489 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASA 548
I T ++++ + +D +AK +FE +S D P+ TY+++++
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMFE----------LMISKD---CFPNVVTYNTLIKGFC 407
Query: 549 TAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPL 608
A + + +++ M+ G + + L+ +A +C + F ++ G +P +
Sbjct: 408 KAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIM 467
Query: 609 FFTEML 614
++ +L
Sbjct: 468 TYSILL 473
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 227 (85.0 bits), Expect = 3.5e-15, P = 3.5e-15
Identities = 74/383 (19%), Positives = 163/383 (42%)
Query: 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEF 371
PD + + +++ ++ + ++ + G +P+ TYG+ + + + G DL
Sbjct: 188 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNL 247
Query: 372 FRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431
KM + + + ++ + + +++A+ + ME +G+ Y L CLC+
Sbjct: 248 LNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCS 307
Query: 432 NGRWQDA-MLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNI 489
GRW DA L+ + I+ + P +TF LI + + G + ++ M K +P+I
Sbjct: 308 YGRWSDASQLLSDMIE--KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDI 365
Query: 490 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 549
T N+++ + +D KAK++FE +S D PD TY+++++
Sbjct: 366 FTYNSLVNGFCMHDRLDKAKQMFE----------FMVSKD---CFPDVVTYNTLIKGFCK 412
Query: 550 AHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLF 609
+ + E +++ M+ G D + L+ G C + F ++ G +P +
Sbjct: 413 SKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG-VPPDIM 471
Query: 610 FTEMLIQAIVQSN-YEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNAL 668
+L+ + + EKA+ + + M + + +T + E K++ +
Sbjct: 472 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEG---MCKAGKVDDGWDLF 528
Query: 669 CNCNAASSEITVSNLSRALHALC 691
C+ + + V + + LC
Sbjct: 529 CSLSLKGVKPNVVTYNTMISGLC 551
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FJW6 | PP451_ARATH | No assigned EC number | 0.6217 | 0.7704 | 0.8496 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 880 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 5e-15
Identities = 56/277 (20%), Positives = 112/277 (40%), Gaps = 16/277 (5%)
Query: 239 GKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRI 298
+AG+ +A + +M N+ PD ++++ GQ G + ++ M+ + + I
Sbjct: 518 ARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THPI 575
Query: 299 KNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEV 358
PD + A++ AC + Q V++ + + +K + Y +A+
Sbjct: 576 D------------PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623
Query: 359 MLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT 418
Q G +D + M K G + + LV G +++A +++ ++G+
Sbjct: 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683
Query: 419 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIF 478
Y L N W+ A+ + E IKS++ +P T LI + +G + + +
Sbjct: 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIK-LRPTVSTMNALITALCEGNQLPKALEVL 742
Query: 479 QHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEE 514
MK PN T + +L R D +L +
Sbjct: 743 SEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 9e-07
Identities = 77/395 (19%), Positives = 136/395 (34%), Gaps = 81/395 (20%)
Query: 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPS-KRIKNMHRKNWDP------------- 308
Y L + G +K+ + L+E M ++ K H K +
Sbjct: 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF 428
Query: 309 ---VLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKY 365
+ P L +N +++ C S G V + ++++GLK Y + +SGK
Sbjct: 429 AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 366 DLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYEL 425
D + E F +M +G T+ L+ G++ +A A M + V V+ L
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
Query: 426 ACCLCNNGRWQDAMLVVEKIKSLRHS-KPLEITFTGLIISSMDGGHIDDCISIFQHMKD- 483
+G A V+ ++K+ H P IT L+ + + G +D ++Q + +
Sbjct: 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 484 -------------HCEPNIGTVNAMLKVYSRNDM-----------FS----------KAK 509
+ G + L +Y +DM FS
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIY--DDMKKKGVKPDEVFFSALVDVAGHAGDLD 666
Query: 510 ELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSG-- 567
+ FE A G K +YSS++ A + A W+ +Y+ +
Sbjct: 667 KAFEILQDARKQGI----------KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716
Query: 568 -------------CQLDQ-TKHAWLLVEASRAGKC 588
C+ +Q K +L E R G C
Sbjct: 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352
PD+V YN +++ + + +F +++K G+KP+ TY
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 7e-06
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 13/60 (21%)
Query: 487 PNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA 546
P++ T N ++ Y + +A +LF E + +KP+ YTYS +++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-------------IKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 42/188 (22%), Positives = 69/188 (36%), Gaps = 30/188 (15%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
LL G G A+ + + + D + LL ++G + L F+ M
Sbjct: 560 LLTGYVAHGKGSMAVELFNRMVESGVNPD---EVTFISLLCACSRSGMVTQGLEYFHSME 616
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
E ++ P++ Y V LG+ G L E I +M P+ PD
Sbjct: 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-----------------PI-TPDPA 658
Query: 316 VYNAVLNACVPSHQWK----GVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEF 371
V+ A+LNAC + +F+ S Y L + +GK+D V
Sbjct: 659 VWGALLNACRIHRHVELGELAAQHIFELDPN-----SVGYYILLCNLYADAGKWDEVARV 713
Query: 372 FRKMAKSG 379
+ M ++G
Sbjct: 714 RKTMRENG 721
|
Length = 857 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 1e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347
L YNA+L A + V ++++ SGLKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 89/436 (20%), Positives = 159/436 (36%), Gaps = 103/436 (23%)
Query: 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV---AVTLGQVGLLKELVKLIERMRQKP 294
L GR EAL +F ++ C + Y ++ + L + +K + +E
Sbjct: 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVE------ 150
Query: 295 SKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGL 354
EPD + N VL V G+ ++L + + A++G
Sbjct: 151 ------------SSGFEPDQYMMNRVLLMHVKC----GMLIDARRLFDEMPERNLASWGT 194
Query: 355 AMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRG 414
+ ++ +G Y FR+M + G T+ V++R A A
Sbjct: 195 IIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR----------ASAG-------- 236
Query: 415 VVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDC 474
+G+A +L CC+ G D + LI G I+D
Sbjct: 237 -LGSARAGQQLHCCVLKTGVVGDTFVSC-----------------ALIDMYSKCGDIEDA 278
Query: 475 ISIFQHMKDHCEPNIGTV--NAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAP 532
+F M P TV N+ML Y+ + +A L+ E +
Sbjct: 279 RCVFDGM-----PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG------------- 320
Query: 533 LKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLE 592
+ D++T+S M+ + E+ + + G+ +G LD + L+ S+ G+
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380
Query: 593 HAFDSL----------LEAGEIPH-------PLFFTEMLIQAIVQSNYEKAVALINAMAY 635
+ FD + L AG H +F E +I V N+ +A+++A Y
Sbjct: 381 NVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMF--ERMIAEGVAPNHVTFLAVLSACRY 438
Query: 636 APFHITERQWTELFES 651
+ +E+ W E+F+S
Sbjct: 439 SGL--SEQGW-EIFQS 451
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 8e-04
Identities = 76/370 (20%), Positives = 143/370 (38%), Gaps = 67/370 (18%)
Query: 204 GSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD 263
GSW +A V + + +D S +T +++ K G P +AL + LM E N+ PD
Sbjct: 337 GSWGEAEKV----FSRMETKDAVS---WTAMISGYEKNGLPDKALETYALM-EQDNVSPD 388
Query: 264 ---IAAYHSVAVTLGQVGLLKELVKLIER---------------MRQKPSKRI------- 298
IA+ S LG + + +L +L ER M K K I
Sbjct: 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK-CKCIDKALEVF 447
Query: 299 KNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEV 358
N+ K D++ + +++ +++ F+Q+ LKP++ T A+
Sbjct: 448 HNIPEK--------DVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSA 498
Query: 359 MLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT 418
+ G E + ++G L+ + G++N A N ++ VV
Sbjct: 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVVS- 556
Query: 419 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIF 478
+ L +G+ A+ + ++ P E+TF L+ + G + + F
Sbjct: 557 ---WNILLTGYVAHGKGSMAVELFNRMVESG-VNPDEVTFISLLCACSRSGMVTQGLEYF 612
Query: 479 QHMKD--HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD 536
M++ PN+ ++ D+ +A +L E Y F+ + P+ PD
Sbjct: 613 HSMEEKYSITPNLKHYACVV------DLLGRAGKLTE--------AYNFI--NKMPITPD 656
Query: 537 EYTYSSMLEA 546
+ ++L A
Sbjct: 657 PAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI 264
Y L+ L KAGR EAL +F M E + PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKER-GIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 880 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.8 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.8 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.78 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.77 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.76 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.71 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.7 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.68 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.66 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.63 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.6 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.56 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.55 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.55 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.5 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.47 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.47 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.38 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.37 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.37 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.35 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.35 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.33 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.32 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.31 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.3 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.29 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.28 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.27 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.24 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.22 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.22 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.2 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.18 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.18 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.18 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.18 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.14 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.13 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.09 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.09 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.04 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.04 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.03 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.02 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.0 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.96 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.94 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.93 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.9 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.88 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.86 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.85 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.83 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.81 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.81 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.8 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.77 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.77 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.76 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.74 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.72 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.72 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.68 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.67 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.66 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.65 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.58 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.57 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.55 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.53 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.5 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.49 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.47 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.47 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.43 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.42 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.42 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.41 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.41 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.37 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.37 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.34 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.33 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.33 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.32 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.32 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.28 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.28 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.24 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.19 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.18 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.14 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.12 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.12 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.11 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.97 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.96 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 97.96 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.93 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.88 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.87 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.87 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.86 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.83 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.77 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.77 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.73 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.72 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.72 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.71 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.7 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.7 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.66 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.64 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.59 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.58 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.54 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.52 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.5 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.45 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.35 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.33 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.28 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.2 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.2 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.19 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.17 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.14 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.13 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.13 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.1 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.09 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.07 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.03 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 96.92 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.9 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.9 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.89 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 96.89 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.89 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.87 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.79 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.75 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.7 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.63 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.57 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.55 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.4 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.33 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.28 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.27 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.26 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.22 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.21 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.2 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.2 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.13 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.11 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.09 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.06 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.02 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 95.98 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.97 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.96 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 95.94 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 95.93 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.9 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.84 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.77 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 95.74 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.71 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.69 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.68 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.61 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.51 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 95.51 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 95.4 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 95.35 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 95.33 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.05 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.04 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.98 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.95 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.92 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.82 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.73 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 94.49 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 94.42 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 94.33 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.33 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 94.27 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.21 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 94.19 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 94.17 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.15 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.15 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.01 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 93.81 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.53 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 93.43 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.36 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.36 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.32 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 93.22 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 93.05 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.04 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 93.02 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.6 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.35 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 92.3 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.2 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 91.87 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 91.83 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 91.75 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 91.56 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.18 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.97 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.81 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 90.22 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.19 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.13 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.1 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.03 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 90.0 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.0 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.61 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 89.58 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 89.56 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 88.6 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 88.56 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 88.54 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 88.4 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.03 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 87.93 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 87.86 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 87.71 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.6 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.33 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 87.15 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 86.56 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.5 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 86.12 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 85.95 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 85.92 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 85.79 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 85.79 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 85.53 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 85.41 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 85.26 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.73 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 84.68 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 84.24 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 83.06 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 83.06 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 82.96 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 82.71 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 82.57 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.11 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 82.03 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.68 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.6 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 81.51 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 81.15 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 80.22 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-67 Score=651.42 Aligned_cols=589 Identities=14% Similarity=0.104 Sum_probs=536.6
Q ss_pred hhccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002795 128 LDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWR 207 (880)
Q Consensus 128 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 207 (880)
-.+++..|..+|+.|. .++..+|+.++..+++.|++++|+.+|+.|...|+.||..||+.++++|+..+++.
T Consensus 133 ~~g~~~~A~~~f~~m~--------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 133 RFGELVHAWYVFGKMP--------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred hCCChHHHHHHHhcCC--------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 3467788888997753 35778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002795 208 QAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLI 287 (880)
Q Consensus 208 ~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~ 287 (880)
.+.+++..+.+.+. .+|+.+||+||.+|+++|++++|.++|++|.. ||..+||++|.+|++.|++++|+++|
T Consensus 205 ~~~~~~~~~~~~g~---~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf 276 (857)
T PLN03077 205 RGREVHAHVVRFGF---ELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELF 276 (857)
T ss_pred hHHHHHHHHHHcCC---CcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHH
Confidence 99999999998654 58999999999999999999999999999975 69999999999999999999999999
Q ss_pred HHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 002795 288 ERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDL 367 (880)
Q Consensus 288 ~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 367 (880)
.+|...| +.||.+||+++|.+|++.|+.+.|.+++..|.+.|+.||..+|+++|.+|++.|++++
T Consensus 277 ~~M~~~g---------------~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 277 FTMRELS---------------VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHHHcC---------------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 9999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002795 368 VHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 368 A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
|.++|++|.. ||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+
T Consensus 342 A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 342 AEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred HHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999964 689999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccC
Q 002795 448 LRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLS 527 (880)
Q Consensus 448 ~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~ 527 (880)
.|..|+..+|++|+.+|+++|++++|.++|+.|.+ +|..+||+||.+|++.|+.++|+.+|++|.. +
T Consensus 418 -~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~-------- 484 (857)
T PLN03077 418 -KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T-------- 484 (857)
T ss_pred -hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C--------
Confidence 89999999999999999999999999999999987 8999999999999999999999999999986 3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 002795 528 GDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHP 607 (880)
Q Consensus 528 ~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~ 607 (880)
+.||..||+++|.+|++.|+++.+.+++..|.+.|+.+|..++++||++|+++|++++|..+|+.+ .||.
T Consensus 485 -----~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~ 554 (857)
T PLN03077 485 -----LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDV 554 (857)
T ss_pred -----CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCCh
Confidence 789999999999999999999999999999999999999999999999999999999999999987 5899
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHH-hCCCCCChhhHHHHHHH
Q 002795 608 LFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALC-NCNAASSEITVSNLSRA 686 (880)
Q Consensus 608 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a~~l~~~~~-~~~~~p~~~~~~~~~~~ 686 (880)
.+||+||.+|+++|+.++|+++|++|...|+.||..||+.+|.+|.+.|.+++|.++|+.|. +.|+.|+. .++..+
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~---~~y~~l 631 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL---KHYACV 631 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch---HHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 67888754 455667
Q ss_pred HHHHHhccchhhhhhhccccccccccccccchhhhhhcccccCCCchhhhHhh---hcccCCCCCCCCc-cCCccCcccc
Q 002795 687 LHALCRSEKERDLSSSAHFGSQAIDISPLHGIHEAFDVKETENVPSSSASMMF---ENADLGADPLPQK-TDVAVDIDSI 762 (880)
Q Consensus 687 ~~~~~~~g~~~ea~~~~~~~~~~v~~~~l~~~~~~f~~~~~~~~~~~~~~i~~---~G~~~~Al~lf~~-~~~~Pd~~t~ 762 (880)
++.|++.|++++|.+++..+ ...++...|++++.+ ||+.+.|....++ ..+.|+..++
T Consensus 632 v~~l~r~G~~~eA~~~~~~m------------------~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~ 693 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKM------------------PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY 693 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHC------------------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence 99999999999997765441 135677778888887 7777766666666 6677776654
Q ss_pred ccc---------------ccccccCchhhhhhhhhcccccCCCCCccc
Q 002795 763 NHS---------------SLSRQADADTEMFSKALSYIHSNDRPSNLC 795 (880)
Q Consensus 763 ~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (880)
.-. ++.......++.+.+.++||+.++.++.|-
T Consensus 694 y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~ 741 (857)
T PLN03077 694 YILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFL 741 (857)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEe
Confidence 221 111223455566677889999888777653
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-66 Score=639.14 Aligned_cols=542 Identities=14% Similarity=0.107 Sum_probs=516.1
Q ss_pred CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHH
Q 002795 151 WRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV 230 (880)
Q Consensus 151 ~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~ 230 (880)
..++...++.++..+++.|++++|+.+|+.|.+.|++|+..+|..++.+|.+.+.++.|.+++..+.+.+. .++..+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~ 123 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP---SLGVRL 123 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCC---CCCchH
Confidence 35567789999999999999999999999999999999999999999999999999999999999988665 378899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCC
Q 002795 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVL 310 (880)
Q Consensus 231 ~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~ 310 (880)
+|+|+.+|++.|+++.|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|...| .
T Consensus 124 ~n~li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g---------------~ 183 (857)
T PLN03077 124 GNAMLSMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG---------------V 183 (857)
T ss_pred HHHHHHHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------------C
Confidence 99999999999999999999999975 799999999999999999999999999999988 9
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHH
Q 002795 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVL 390 (880)
Q Consensus 311 ~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~L 390 (880)
.||.+||+++|.+|+..+++..+.+++..|.+.|+.||..+|+++|.+|++.|+++.|.++|++|.. +|..+||+|
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~l 259 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAM 259 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999964 688999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Q 002795 391 VRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH 470 (880)
Q Consensus 391 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~ 470 (880)
|.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+.+.|.+++..|.+ .|..||..+|++|+.+|+++|+
T Consensus 260 i~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~d~~~~n~Li~~y~k~g~ 338 (857)
T PLN03077 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK-TGFAVDVSVCNSLIQMYLSLGS 338 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-hCCccchHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999998 8999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 002795 471 IDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA 550 (880)
Q Consensus 471 ~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~ 550 (880)
+++|.++|+.|.. ||..+||+||.+|++.|++++|+++|++|...| +.||..||+++|.+|++.
T Consensus 339 ~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g-------------~~Pd~~t~~~ll~a~~~~ 402 (857)
T PLN03077 339 WGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDN-------------VSPDEITIASVLSACACL 402 (857)
T ss_pred HHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------------CCCCceeHHHHHHHHhcc
Confidence 9999999999986 899999999999999999999999999999987 899999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 002795 551 HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALI 630 (880)
Q Consensus 551 ~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~ 630 (880)
|+++.|.+++..|.+.|+.|+..+|++||.+|+++|++++|.++|+.|.+ +|..+|+.+|.+|++.|+.++|+.+|
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999975 67889999999999999999999999
Q ss_pred HHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHhccchhhhhhhcccccccc
Q 002795 631 NAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFGSQAI 710 (880)
Q Consensus 631 ~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~~~~v 710 (880)
++|.. ++.||..||.++|.+|.+.|.++.+.+++..+.+.|+.++....+. ++++|+++|++++|.++
T Consensus 479 ~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na---Li~~y~k~G~~~~A~~~-------- 546 (857)
T PLN03077 479 RQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA---LLDLYVRCGRMNYAWNQ-------- 546 (857)
T ss_pred HHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH---HHHHHHHcCCHHHHHHH--------
Confidence 99986 5999999999999999999999999999999999999977766654 59999999999999554
Q ss_pred ccccccchhhhhhcccccCCCchhhhHhh---hcccCCCCCCCCc---cCCccCcccccc
Q 002795 711 DISPLHGIHEAFDVKETENVPSSSASMMF---ENADLGADPLPQK---TDVAVDIDSINH 764 (880)
Q Consensus 711 ~~~~l~~~~~~f~~~~~~~~~~~~~~i~~---~G~~~~Al~lf~~---~~~~Pd~~t~~~ 764 (880)
|+.+ .+++++||+||.+ +|+.++|+.+|++ .|+.||.+||+.
T Consensus 547 -----------f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 547 -----------FNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred -----------HHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 4445 7899999999999 9999999999998 899999999954
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=602.13 Aligned_cols=513 Identities=17% Similarity=0.218 Sum_probs=474.6
Q ss_pred CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCH
Q 002795 150 RWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGL-MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSR 228 (880)
Q Consensus 150 ~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~ 228 (880)
....+...|..++..+++.|++++|+++|+.|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|.. ||.
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-------pd~ 437 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-------PTL 437 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-------CCH
Confidence 4456678899999999999999999999999999996 47788889999999999999999999998732 899
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCC
Q 002795 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308 (880)
Q Consensus 229 ~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~ 308 (880)
.+|+.||.+|++.|++++|.++|+.|.+. |+.||..+|++||.+|++.|++++|.++|++|.+.|
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-------------- 502 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-------------- 502 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC--------------
Confidence 99999999999999999999999999997 999999999999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCCCccHHH
Q 002795 309 VLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAK--SGEAIGALT 386 (880)
Q Consensus 309 ~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~--~g~~~d~~~ 386 (880)
+.||.++|++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.. .|+.||..+
T Consensus 503 -v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vT 581 (1060)
T PLN03218 503 -VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581 (1060)
T ss_pred -CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 578999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 002795 387 YKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM 466 (880)
Q Consensus 387 ~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~ 466 (880)
|++||.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.. .|+.||..+|+.++.+|+
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~-~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 899999999999999999
Q ss_pred hCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHH
Q 002795 467 DGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLE 545 (880)
Q Consensus 467 ~~g~~~~A~~i~~~m~~-~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~ 545 (880)
+.|++++|.++|+.|.+ ++.||..+|++||.+|+++|++++|.++|++|...| +.||..||++||.
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-------------~~PdvvtyN~LI~ 727 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-------------LRPTVSTMNALIT 727 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------------CCCCHHHHHHHHH
Confidence 99999999999999998 799999999999999999999999999999999987 8999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----h-
Q 002795 546 ASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV----Q- 620 (880)
Q Consensus 546 a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~- 620 (880)
+|++.|++++|.++|++|...|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.||..+|++++..|.+ .
T Consensus 728 gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~ 807 (1060)
T PLN03218 728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKAC 807 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999865432 1
Q ss_pred ------------------CCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHH
Q 002795 621 ------------------SNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSN 682 (880)
Q Consensus 621 ------------------g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~ 682 (880)
+..++|+.+|++|...|+.||..||+.+|.++...+....+..+++.|...+..|+.. +
T Consensus 808 ~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~---~ 884 (1060)
T PLN03218 808 ALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQS---N 884 (1060)
T ss_pred hhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchh---h
Confidence 1246899999999999999999999999977777788888888888776666554444 4
Q ss_pred HHHHHHHHHhccchhhhhhhcc
Q 002795 683 LSRALHALCRSEKERDLSSSAH 704 (880)
Q Consensus 683 ~~~~~~~~~~~g~~~ea~~~~~ 704 (880)
+..+++++++. .++|..++.
T Consensus 885 y~~Li~g~~~~--~~~A~~l~~ 904 (1060)
T PLN03218 885 LSTLVDGFGEY--DPRAFSLLE 904 (1060)
T ss_pred hHHHHHhhccC--hHHHHHHHH
Confidence 45558887532 245655543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-63 Score=597.69 Aligned_cols=509 Identities=16% Similarity=0.221 Sum_probs=477.0
Q ss_pred hhccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002795 128 LDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWR 207 (880)
Q Consensus 128 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 207 (880)
-.+++..|..+|+.|... ....++...+..++..+++.|.+++|+.+|+.|.. |+..+|+.++.+|++.|+++
T Consensus 382 r~G~l~eAl~Lfd~M~~~---gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e 454 (1060)
T PLN03218 382 RDGRIKDCIDLLEDMEKR---GLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDID 454 (1060)
T ss_pred HCcCHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHH
Confidence 356788899999887652 12335666778889999999999999999999974 89999999999999999999
Q ss_pred HHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002795 208 QAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLI 287 (880)
Q Consensus 208 ~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~ 287 (880)
.|.++|+.|.+.+. .||..+||.||.+|++.|++++|.++|++|.+. |+.||..||++||.+|++.|++++|.++|
T Consensus 455 ~A~~lf~~M~~~Gl---~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 455 GALRVLRLVQEAGL---KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred HHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 99999999988654 599999999999999999999999999999997 99999999999999999999999999999
Q ss_pred HHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCh
Q 002795 288 ERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK--SGLKPSAATYGLAMEVMLQSGKY 365 (880)
Q Consensus 288 ~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~--~g~~pd~~t~~~ll~a~~~~g~~ 365 (880)
+.|...| ..||.++||+||.+|++.|++++|.++|.+|.. .|+.||..||+++|.+|++.|++
T Consensus 531 ~~M~~~G---------------v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 531 GIMRSKN---------------VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHHHcC---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 9999988 999999999999999999999999999999986 68999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002795 366 DLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKI 445 (880)
Q Consensus 366 ~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m 445 (880)
++|.++|+.|.+.|+.|+..+||++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|..+|++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Q 002795 446 KSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYT 524 (880)
Q Consensus 446 ~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~-~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~ 524 (880)
.+ .+..|+..+|++||.+|+++|++++|.++|+.|.+ ++.||..+||+||.+|++.|++++|.++|++|...|
T Consensus 676 ~k-~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G----- 749 (1060)
T PLN03218 676 RK-QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG----- 749 (1060)
T ss_pred HH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----
Confidence 98 89999999999999999999999999999999988 699999999999999999999999999999999987
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HcC--------------
Q 002795 525 FLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEAS----RAG-------------- 586 (880)
Q Consensus 525 ~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~----~~G-------------- 586 (880)
+.||..||+++|.+|++.|+++.|.++|.+|.+.|+.||..+|++++..|. +++
T Consensus 750 --------i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~ 821 (1060)
T PLN03218 750 --------LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRP 821 (1060)
T ss_pred --------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 899999999999999999999999999999999999999999999997643 222
Q ss_pred -----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHH
Q 002795 587 -----KCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKL 661 (880)
Q Consensus 587 -----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a 661 (880)
..+.|..+|++|.+.|+.||..+|+.++.+++..+..+.+..+++.|...+..|+..+|++++.+|.+. .++|
T Consensus 822 ~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A 899 (1060)
T PLN03218 822 QIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRA 899 (1060)
T ss_pred ccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHH
Confidence 236799999999999999999999999988888899999999999999889999999999999998543 4689
Q ss_pred HHHHHHHHhCCCCCChh
Q 002795 662 EKLLNALCNCNAASSEI 678 (880)
Q Consensus 662 ~~l~~~~~~~~~~p~~~ 678 (880)
..++++|.+.|+.|+..
T Consensus 900 ~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 900 FSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHcCCCCCcc
Confidence 99999999999997764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-60 Score=571.98 Aligned_cols=467 Identities=13% Similarity=0.169 Sum_probs=322.4
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 002795 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267 (880)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~ 267 (880)
.+..+++.+|..|.+.|++++|.++|++|...++ ..||..+|+.++.+|++.++++.|.+++..|.+. |+.||..+|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~--~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~ 161 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCP--FTLPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEPDQYMM 161 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchHHH
Confidence 3445566666666666666666666666654321 2366667777777777777777777777777665 666777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC
Q 002795 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (880)
Q Consensus 268 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (880)
|.|+.+|++.|++++|.++|++| ..||.++||++|.+|++.|++++|+++|++|.+.|+.|
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m-------------------~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p 222 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEM-------------------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcC-------------------CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 77777777777777777777666 44667777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002795 348 SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELAC 427 (880)
Q Consensus 348 d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~ 427 (880)
+..||+.++.+|++.|..+.+.+++..+.+.|+.+|..+||+||.+|+++|++++|.++|++|.. +|..+||+||.
T Consensus 223 ~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~ 298 (697)
T PLN03081 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLA 298 (697)
T ss_pred ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777776643 35566777777
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHH
Q 002795 428 CLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFS 506 (880)
Q Consensus 428 ~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~-~~~pd~~~~~~Li~~~~~~g~~~ 506 (880)
+|++.|++++|+.+|++|.. .|+.||..||++++.+|++.|.++.|.+++..|.+ ++.||..+|++||++|+++|+++
T Consensus 299 ~y~~~g~~~eA~~lf~~M~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 299 GYALHGYSEEALCLYYEMRD-SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 77777777777777777766 66777777777777777777777777777777766 56677777777777777777777
Q ss_pred HHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002795 507 KAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAG 586 (880)
Q Consensus 507 ~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G 586 (880)
+|.++|++|.+ ||..||++||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|
T Consensus 378 ~A~~vf~~m~~-----------------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 440 (697)
T PLN03081 378 DARNVFDRMPR-----------------KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440 (697)
T ss_pred HHHHHHHhCCC-----------------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence 77777776633 6667777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHH
Q 002795 587 KCHLLEHAFDSLLE-AGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLL 665 (880)
Q Consensus 587 ~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a~~l~ 665 (880)
.+++|.++|+.|.+ .|+.|+..+|++|+..|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..++
T Consensus 441 ~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 77777777777764 467777777777777777777777777777666 56677777777777777777777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHHHHhccchhhhhhhccc
Q 002795 666 NALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHF 705 (880)
Q Consensus 666 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~ 705 (880)
+++.+.++ +. ..++..+++.|++.|++++|.+++..
T Consensus 518 ~~l~~~~p--~~--~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 518 EKLYGMGP--EK--LNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHhCCCC--CC--CcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 76665443 22 22344456677777777777665544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-58 Score=551.78 Aligned_cols=474 Identities=14% Similarity=0.134 Sum_probs=451.8
Q ss_pred CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHH
Q 002795 152 RSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSG-LMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV 230 (880)
Q Consensus 152 ~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~ 230 (880)
+.+...++.++..+.+.|++++|+.+|+.|...+ +.|+..+|+.++.+|++.++++.|.+++..|.+.+ ..||..+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g---~~~~~~~ 160 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG---FEPDQYM 160 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCcchHH
Confidence 3445578999999999999999999999999864 78999999999999999999999999999998865 4589999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCC
Q 002795 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVL 310 (880)
Q Consensus 231 ~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~ 310 (880)
||.|+.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.+.| .
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g---------------~ 220 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDG---------------S 220 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC---------------C
Confidence 99999999999999999999999975 799999999999999999999999999999988 9
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHH
Q 002795 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVL 390 (880)
Q Consensus 311 ~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~L 390 (880)
.||..+|+.++.+|++.|....+.+++..|.+.|+.||..+|++||.+|++.|++++|.++|+.|.. +|..+||+|
T Consensus 221 ~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~l 296 (697)
T PLN03081 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSM 296 (697)
T ss_pred CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999964 589999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Q 002795 391 VRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH 470 (880)
Q Consensus 391 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~ 470 (880)
|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+ .+..||..+|++|+.+|+++|+
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~ 375 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGR 375 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 002795 471 IDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA 550 (880)
Q Consensus 471 ~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~ 550 (880)
+++|.++|+.|.+ ||..+||+||.+|++.|+.++|+++|++|.+.| +.||..||+++|.+|++.
T Consensus 376 ~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-------------~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 376 MEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEG-------------VAPNHVTFLAVLSACRYS 439 (697)
T ss_pred HHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------CCCCHHHHHHHHHHHhcC
Confidence 9999999999987 899999999999999999999999999999987 899999999999999999
Q ss_pred CCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 002795 551 HQWEYFEYVYKGMAL-SGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVAL 629 (880)
Q Consensus 551 ~~~~~A~~l~~~m~~-~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l 629 (880)
|..++|.++|+.|.+ .|+.|+..+|+.++++|+++|++++|.++|+.| ++.|+..+|++++.+|..+|+++.|..+
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 999999999999986 699999999999999999999999999998765 6789999999999999999999999999
Q ss_pred HHHhhhCCCccC-HHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 002795 630 INAMAYAPFHIT-ERQWTELFESNEDRISRDKLEKLLNALCNCNAA 674 (880)
Q Consensus 630 ~~~m~~~~~~p~-~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~ 674 (880)
++++. ++.|+ ..+|..++..|.+.|+++.|.++++.|.+.|+.
T Consensus 517 ~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 517 AEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 99997 45664 568999999999999999999999999999986
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-27 Score=299.00 Aligned_cols=522 Identities=12% Similarity=0.002 Sum_probs=346.7
Q ss_pred hccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 002795 129 DDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQ 208 (880)
Q Consensus 129 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 208 (880)
.++.+.|...|..++.. .......+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++
T Consensus 274 ~~~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~ 347 (899)
T TIGR02917 274 KKNYEDARETLQDALKS-----APEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDE 347 (899)
T ss_pred hcCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHH
Confidence 45556666666554431 12223344445555666777777777777766654 4455666666677777777777
Q ss_pred HHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002795 209 AMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIE 288 (880)
Q Consensus 209 A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~ 288 (880)
|...++.++...+ .+...++.+...+.+.|++++|..+|+++.+. .+.+...|..+...+...|++++|...|.
T Consensus 348 A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 421 (899)
T TIGR02917 348 AIATLSPALGLDP----DDPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLE 421 (899)
T ss_pred HHHHHHHHHhcCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 7777777665432 45566777777777777777777777777653 23345566666667777777777777777
Q ss_pred HHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Q 002795 289 RMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLV 368 (880)
Q Consensus 289 ~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A 368 (880)
.+.... +.+...+..++..+.+.|++++|..++..+.... +++..++..+..++...|++++|
T Consensus 422 ~a~~~~----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 484 (899)
T TIGR02917 422 TAAQLD----------------PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKA 484 (899)
T ss_pred HHHhhC----------------CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHH
Confidence 776542 2233445556666777777777777777776542 34566777777777777777777
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 002795 369 HEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL 448 (880)
Q Consensus 369 ~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~ 448 (880)
..+|.++.+.. +.+...+..+...+...|++++|.+.|+++...++. +..++..+...+.+.|+.++|..++.++...
T Consensus 485 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 485 REAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777654 344566667777777777777777777777766533 4556677777777777777777777777651
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCC
Q 002795 449 RHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSG 528 (880)
Q Consensus 449 ~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~ 528 (880)
...+...+..+...|.+.|++++|..+++.+.+..+.+..+|..+..+|.+.|++++|...|+++....
T Consensus 563 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------- 631 (899)
T TIGR02917 563 --NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--------- 631 (899)
T ss_pred --CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------
Confidence 223344566677777777777777777777776666677777777777777777777777777777643
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 002795 529 DGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPL 608 (880)
Q Consensus 529 ~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~ 608 (880)
..+...+..+..++...|++++|..+++++.+.. +.+..++..+...+...|++++|..+++.+.+.+ .++..
T Consensus 632 -----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 704 (899)
T TIGR02917 632 -----PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAAL 704 (899)
T ss_pred -----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChH
Confidence 1245567777777777777777777777776532 2236667777777777777777777777776654 34555
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 002795 609 FFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALH 688 (880)
Q Consensus 609 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~ 688 (880)
.+..+...+...|++++|+..++++... .|+..++..+...+...|+.+.|.+.++.+.+..+. ++ ..+..+..
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~--~~--~~~~~la~ 778 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN--DA--VLRTALAE 778 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CH--HHHHHHHH
Confidence 6666667777777777777777777643 355566666666777777777777777777776543 22 33444566
Q ss_pred HHHhccchhhhhhhccc
Q 002795 689 ALCRSEKERDLSSSAHF 705 (880)
Q Consensus 689 ~~~~~g~~~ea~~~~~~ 705 (880)
.+...|++++|.+.+..
T Consensus 779 ~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 779 LYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHCcCHHHHHHHHHH
Confidence 67777777777665543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-26 Score=290.01 Aligned_cols=518 Identities=11% Similarity=0.021 Sum_probs=368.2
Q ss_pred ccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 002795 130 DDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQA 209 (880)
Q Consensus 130 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A 209 (880)
++.+.|...|..+.. ..+.+...+..+...+...|++++|...++.+.+.. +........++..+.+.|++++|
T Consensus 377 g~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 450 (899)
T TIGR02917 377 GDFEKAAEYLAKATE-----LDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKA 450 (899)
T ss_pred CCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHH
Confidence 455555555554433 122344455555555666666666666666665544 22333444455566666666666
Q ss_pred HHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002795 210 MSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIER 289 (880)
Q Consensus 210 ~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~ 289 (880)
..+++.+....+ .+..+|+.+...|...|++++|...|+++.+. .+.+...+..+...+...|++++|...|+.
T Consensus 451 ~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 451 LAAAKKLEKKQP----DNASLHNLLGAIYLGKGDLAKAREAFEKALSI--EPDFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHHHhCC----CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666654322 34556666666666666666666666666652 233445556666666666666666666666
Q ss_pred HHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 002795 290 MRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVH 369 (880)
Q Consensus 290 m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~ 369 (880)
+... .+.+..++..+...+.+.|+.++|..+|.++...+ +.+...+..+...+...|++++|.
T Consensus 525 ~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 525 VLTI----------------DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HHHh----------------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHH
Confidence 6654 34567778888888888888888888888887654 335566777888888888888888
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 002795 370 EFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR 449 (880)
Q Consensus 370 ~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~ 449 (880)
.+++.+.+.. +.+..+|..+...|...|++++|...|+.+.+.+.. +...+..+..+|...|++++|...|+++..
T Consensus 588 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-- 663 (899)
T TIGR02917 588 AILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALE-- 663 (899)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Confidence 8888887754 556778888888888888888888888888776532 455677788888888888888888888876
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCC
Q 002795 450 HSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGD 529 (880)
Q Consensus 450 ~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~ 529 (880)
..+.+..++..+...+...|++++|..+++.+.+..+.+...+..+...+.+.|++++|...|..+...+
T Consensus 664 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---------- 733 (899)
T TIGR02917 664 LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA---------- 733 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----------
Confidence 2223456778888888888888888888888887667777888888888888888888888888888743
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 002795 530 GAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLF 609 (880)
Q Consensus 530 ~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~ 609 (880)
|+..++..+..++...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|...|+++.+.. +++...
T Consensus 734 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 806 (899)
T TIGR02917 734 -----PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVV 806 (899)
T ss_pred -----CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHH
Confidence 666777788888888888888888888887643 4457778888888888899999999998888764 346677
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhhCCCcc-CHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 002795 610 FTEMLIQAIVQSNYEKAVALINAMAYAPFHI-TERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALH 688 (880)
Q Consensus 610 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~ 688 (880)
++.+...+...|+ .+|+.+++++... .| +..++..+-..+...|+.+.|...++++.+.++. +. ..+..+..
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~---~~~~~l~~ 879 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AA---AIRYHLAL 879 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ch---HHHHHHHH
Confidence 8888888888888 7788888888643 23 3445556666678889999999999999988754 22 23334578
Q ss_pred HHHhccchhhhhhhcc
Q 002795 689 ALCRSEKERDLSSSAH 704 (880)
Q Consensus 689 ~~~~~g~~~ea~~~~~ 704 (880)
.+++.|+.++|.+.+.
T Consensus 880 ~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 880 ALLATGRKAEARKELD 895 (899)
T ss_pred HHHHcCCHHHHHHHHH
Confidence 8889999999877653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-18 Score=219.38 Aligned_cols=582 Identities=11% Similarity=0.021 Sum_probs=358.2
Q ss_pred hHHhHHHHhhhhhhccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHH--
Q 002795 116 LKEMFEKDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQM-- 193 (880)
Q Consensus 116 l~e~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~-- 193 (880)
....++..-.|...++.+.+...+.++.. ....++..+..++..+.+.|+.++|...++.+.+.. +.+....
T Consensus 28 ~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~-----~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~ 101 (1157)
T PRK11447 28 QQQLLEQVRLGEATHREDLVRQSLYRLEL-----IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSS 101 (1157)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHc-----cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHH
Confidence 44466666668888999999999988666 455678999999999999999999999999999876 4443332
Q ss_pred --------------HHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 002795 194 --------------LKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF-VYTKLLAILGKAGRPHEALRIFNLMLEDC 258 (880)
Q Consensus 194 --------------~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~-~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~ 258 (880)
..+...+...|++++|.+.|+.+++..+ ++.. ....+.......|+.++|++.|+++.+.
T Consensus 102 ~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p----~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~- 176 (1157)
T PRK11447 102 RTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP----PELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD- 176 (1157)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC----CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh-
Confidence 3344568889999999999999986543 2321 1111112223459999999999999985
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchh---Hhhh----------------h---hhcCCCC-------
Q 002795 259 NLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKR---IKNM----------------H---RKNWDPV------- 309 (880)
Q Consensus 259 g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~---l~~m----------------~---~~~f~~~------- 309 (880)
.+-+...+..+...+...|+.++|+..++++....... .... + ...+...
T Consensus 177 -~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 177 -YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred -CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 34467778888999999999999999999986643110 0000 0 0111100
Q ss_pred ----------CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002795 310 ----------LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSG 379 (880)
Q Consensus 310 ----------~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g 379 (880)
..|+... ......+...|++++|+..|++..+.. +-+...+..+..++.+.|++++|...|++..+..
T Consensus 256 ~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~ 333 (1157)
T PRK11447 256 SQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALD 333 (1157)
T ss_pred HHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 0111110 122345778899999999999998753 2267888889999999999999999999998865
Q ss_pred CCc-cHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002795 380 EAI-GALTYK------------VLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIK 446 (880)
Q Consensus 380 ~~~-d~~~~~------------~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~ 446 (880)
... ....|. .+...+.+.|++++|...|+++...... +...+..+...+...|++++|+..|++..
T Consensus 334 p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL 412 (1157)
T PRK11447 334 PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQAL 412 (1157)
T ss_pred CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 221 112222 2245677899999999999999988653 45667778999999999999999999998
Q ss_pred hcCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002795 447 SLRHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCE---------PNIGTVNAMLKVYSRNDMFSKAKELFEETT 516 (880)
Q Consensus 447 ~~~~~~p~-~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~---------pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~ 516 (880)
+ ..|+ ...+..+...|. .+..++|..+++.+....+ -....+..+...+...|++++|+..|++.+
T Consensus 413 ~---~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al 488 (1157)
T PRK11447 413 R---MDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL 488 (1157)
T ss_pred H---hCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7 2333 334444444432 2344555555443322100 001223344455555555555555555555
Q ss_pred HcCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHH-----------------
Q 002795 517 RANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAW----------------- 577 (880)
Q Consensus 517 ~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~----------------- 577 (880)
+. .| +...+..+...|...|++++|...++++.+. .|+ ...+..
T Consensus 489 ~~---------------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 489 AL---------------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred Hh---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 52 24 2334444455555555555555555555432 221 222222
Q ss_pred ---------------------------HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 002795 578 ---------------------------LLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALI 630 (880)
Q Consensus 578 ---------------------------ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~ 630 (880)
+...+...|+.++|..+++. ..++...+..+...+...|++++|+..|
T Consensus 552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y 626 (1157)
T PRK11447 552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAY 626 (1157)
T ss_pred HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 23334455555555555541 1223334455666666667777777777
Q ss_pred HHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHhccchhhhhhhcccccccc
Q 002795 631 NAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFGSQAI 710 (880)
Q Consensus 631 ~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~~~~v 710 (880)
++..... .-+...+..+...+...|+.+.|.+.++.+.+.. |+.+.. ...+...+...|++++|.+.+..
T Consensus 627 ~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--p~~~~~--~~~la~~~~~~g~~~eA~~~~~~----- 696 (1157)
T PRK11447 627 QRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA--NDSLNT--QRRVALAWAALGDTAAAQRTFNR----- 696 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCChHH--HHHHHHHHHhCCCHHHHHHHHHH-----
Confidence 7766431 1134556666666667777777777777666544 233222 22344455567777777554433
Q ss_pred ccccccchhhhhhcccccCCCchhh--------hHhhhcccCCCCCCCCc----cCCccC
Q 002795 711 DISPLHGIHEAFDVKETENVPSSSA--------SMMFENADLGADPLPQK----TDVAVD 758 (880)
Q Consensus 711 ~~~~l~~~~~~f~~~~~~~~~~~~~--------~i~~~G~~~~Al~lf~~----~~~~Pd 758 (880)
+....+.......++ +....|+.++|+..|++ .|+.|.
T Consensus 697 ----------al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 697 ----------LIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred ----------HhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 111111111111112 22238999999999988 456554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-17 Score=210.98 Aligned_cols=555 Identities=11% Similarity=0.030 Sum_probs=311.0
Q ss_pred cHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCC--------
Q 002795 154 EAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDL-------- 225 (880)
Q Consensus 154 ~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~-------- 225 (880)
.....-..++.....++.+.|.+.+..+.... +.++..+..++..+.+.|+.++|.+.++.+.+..|....
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~ 105 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTM 105 (1157)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 33444555566677899999999999998776 668899999999999999999999999999887653211
Q ss_pred ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhh
Q 002795 226 ----KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA-YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKN 300 (880)
Q Consensus 226 ----~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t-~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~ 300 (880)
++......+...+.+.|++++|+..|+.+.+ +.+|+... ...+.......|+.++|...|+++.+.
T Consensus 106 ~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~--~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~------- 176 (1157)
T PRK11447 106 LLSTPEGRQALQQARLLATTGRTEEALASYDKLFN--GAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD------- 176 (1157)
T ss_pred HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHcc--CCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh-------
Confidence 0011123445578899999999999999987 34455321 111122223469999999999999986
Q ss_pred hhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC------------------CC-HHHHHHH------
Q 002795 301 MHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK------------------PS-AATYGLA------ 355 (880)
Q Consensus 301 m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~------------------pd-~~t~~~l------ 355 (880)
.+.+...+..+...+...|+.++|+..|+++...... |. ...+...
T Consensus 177 ---------~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~ 247 (1157)
T PRK11447 177 ---------YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSD 247 (1157)
T ss_pred ---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCC
Confidence 4556777888888899999999999999998653210 00 0001100
Q ss_pred ----------------------------HHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 002795 356 ----------------------------MEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAV 407 (880)
Q Consensus 356 ----------------------------l~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~ 407 (880)
..++...|++++|...|++.++.. +.+..++..|..+|.+.|++++|+..|
T Consensus 248 ~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l 326 (1157)
T PRK11447 248 GDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQF 326 (1157)
T ss_pred chHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 112233444455555554444432 223444444444555555555555555
Q ss_pred HHHHHCCCCC-CHHHHHHHH------------HHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 002795 408 RNMEQRGVVG-TASVYYELA------------CCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDC 474 (880)
Q Consensus 408 ~~m~~~g~~p-~~~t~~~Li------------~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A 474 (880)
++..+.+... ....|..++ ..+.+.|++++|...|++..... ..+...+..+...+...|++++|
T Consensus 327 ~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA 404 (1157)
T PRK11447 327 EKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAA 404 (1157)
T ss_pred HHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 5444433221 111122221 12234444555555555444411 11222333444444445555555
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 002795 475 ISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWE 554 (880)
Q Consensus 475 ~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~ 554 (880)
+..|++..+..+.+...+..+...|. .++.++|+.+++.+...... .+... ...-....+..+...+...|+++
T Consensus 405 ~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~---~~~~~--~~~l~~~~~~~~a~~~~~~g~~~ 478 (1157)
T PRK11447 405 ERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRR---SIDDI--ERSLQNDRLAQQAEALENQGKWA 478 (1157)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHH---HHHHH--HHHhhhhHHHHHHHHHHHCCCHH
Confidence 55555444433333444444444442 23344444444433221000 00000 00000112334445566779999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 002795 555 YFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 633 (880)
Q Consensus 555 ~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 633 (880)
+|.+.+++.++. .|+ ...+..+...|.+.|++++|...|+++.+... .+...+..+...+...|+.++|+..++++
T Consensus 479 eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l 555 (1157)
T PRK11447 479 QAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTL 555 (1157)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 999999998864 554 66777888889999999999999999877431 12333333333344446666666666554
Q ss_pred hhCCC---------------------------------------ccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 002795 634 AYAPF---------------------------------------HITERQWTELFESNEDRISRDKLEKLLNALCNCNAA 674 (880)
Q Consensus 634 ~~~~~---------------------------------------~p~~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~ 674 (880)
..... ..+...+..+-..+...|+.+.|...++.+.+..+.
T Consensus 556 ~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~ 635 (1157)
T PRK11447 556 PRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG 635 (1157)
T ss_pred CchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 32111 112223333444556667777777777777666533
Q ss_pred CChhhHHHHHHHHHHHHhccchhhhhhhccccccccccccccchhhhhhcccccCCCchh---hhHhhhcccCCCCCCCC
Q 002795 675 SSEITVSNLSRALHALCRSEKERDLSSSAHFGSQAIDISPLHGIHEAFDVKETENVPSSS---ASMMFENADLGADPLPQ 751 (880)
Q Consensus 675 p~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~~~~v~~~~l~~~~~~f~~~~~~~~~~~~---~~i~~~G~~~~Al~lf~ 751 (880)
.+ ..+..+...|...|++++|.+.+... .. ....+...+. ......|+.++|+.+|+
T Consensus 636 --~~--~a~~~la~~~~~~g~~~eA~~~l~~l---------------l~-~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 636 --NA--DARLGLIEVDIAQGDLAAARAQLAKL---------------PA-TANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred --CH--HHHHHHHHHHHHCCCHHHHHHHHHHH---------------hc-cCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 22 23444566666667777776554330 00 1112222222 22223899999999999
Q ss_pred c-cCCccCc
Q 002795 752 K-TDVAVDI 759 (880)
Q Consensus 752 ~-~~~~Pd~ 759 (880)
+ ....|+.
T Consensus 696 ~al~~~~~~ 704 (1157)
T PRK11447 696 RLIPQAKSQ 704 (1157)
T ss_pred HHhhhCccC
Confidence 9 5544443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-16 Score=186.36 Aligned_cols=512 Identities=9% Similarity=0.017 Sum_probs=268.2
Q ss_pred hhhccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 002795 127 VLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSW 206 (880)
Q Consensus 127 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 206 (880)
..+++...|...|...+. ..+.+..++..|...+...|++++|...++...+.. |+-..|..++..+ ++.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~-----~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~ 124 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQ-----QVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVE 124 (987)
T ss_pred HhCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccC
Confidence 344556666666655444 333345555666666666666666666666665543 2322222222222 555
Q ss_pred HHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH-HHHHHhc
Q 002795 207 RQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI--------LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV-AVTLGQV 277 (880)
Q Consensus 207 ~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~--------~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~l-l~~~~~~ 277 (880)
.+|..+++++++..| .+..++..+... |.+. ++|.+.++ .... ...|+..+.... ...|.+.
T Consensus 125 ~kA~~~ye~l~~~~P----~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~-~~~~~~~vL~L~~~rlY~~l 195 (987)
T PRK09782 125 VKSVTTVEELLAQQK----ACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATF-AASPEGKTLRTDLLQRAIYL 195 (987)
T ss_pred hhHHHHHHHHHHhCC----CChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-Hhhh-CCCCCcHHHHHHHHHHHHHH
Confidence 666666666655443 222333333332 3333 33333333 2211 222233333333 5666666
Q ss_pred CCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002795 278 GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP-SHQWKGVFWVFKQLRKSGLKPSAATYGLAM 356 (880)
Q Consensus 278 g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 356 (880)
|++++|+.++..+.+.+ +.+..-+..+-.+|.. .++ +++..+++. .++-+......+.
T Consensus 196 ~dw~~Ai~lL~~L~k~~----------------pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala 254 (987)
T PRK09782 196 KQWSQADTLYNEARQQN----------------TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYA 254 (987)
T ss_pred hCHHHHHHHHHHHHhcC----------------CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHH
Confidence 66666666666666542 2233334444445554 244 555555332 2223555555666
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCC-ccHHHHHHHH------------------------------HHHHhcCCHHHHHH
Q 002795 357 EVMLQSGKYDLVHEFFRKMAKSGEA-IGALTYKVLV------------------------------RAFWEEGKINEAVA 405 (880)
Q Consensus 357 ~a~~~~g~~~~A~~l~~~m~~~g~~-~d~~~~~~Li------------------------------~~~~~~g~~~~A~~ 405 (880)
..+.+.|+.++|.+++.++...-.. |...+|--++ ..+.+.+.++.+.+
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK 334 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 6666666666666666655443211 2223332221 11222222222222
Q ss_pred HHHH--------HHHCCCC-------------------C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCCCHH
Q 002795 406 AVRN--------MEQRGVV-------------------G-TASVYYELACCLCNNGRWQDAMLVVEKIKSL-RHSKPLEI 456 (880)
Q Consensus 406 ~~~~--------m~~~g~~-------------------p-~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~-~~~~p~~~ 456 (880)
+... +.-.+.. | +....--+.-...+.|+.++|..+|+..... ....++..
T Consensus 335 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (987)
T PRK09782 335 LLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQT 414 (987)
T ss_pred HhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHH
Confidence 2100 0000000 0 0000001111124566777777777766541 12223333
Q ss_pred HHHHHHHHHHhCCC---HHHHHHH----------------------HHHHhh---CCCC--CHHHHHHHHHHHHhcCCHH
Q 002795 457 TFTGLIISSMDGGH---IDDCISI----------------------FQHMKD---HCEP--NIGTVNAMLKVYSRNDMFS 506 (880)
Q Consensus 457 t~~~ll~a~~~~g~---~~~A~~i----------------------~~~m~~---~~~p--d~~~~~~Li~~~~~~g~~~ 506 (880)
....++..|...+. ..++..+ ...... ..++ +...|..+..++.. ++..
T Consensus 415 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~ 493 (987)
T PRK09782 415 LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPG 493 (987)
T ss_pred HHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcH
Confidence 44466666666544 2222222 122222 1244 67777777777776 7778
Q ss_pred HHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002795 507 KAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAG 586 (880)
Q Consensus 507 ~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G 586 (880)
+|+..|.+.... .|+......+..++...|++++|...|+++... .|+...+..+...+.+.|
T Consensus 494 eAi~a~~~Al~~---------------~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~G 556 (987)
T PRK09782 494 VALYAWLQAEQR---------------QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAG 556 (987)
T ss_pred HHHHHHHHHHHh---------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCC
Confidence 888877777763 476554444444556778888888888877543 444444556666677888
Q ss_pred CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHH
Q 002795 587 KCHLLEHAFDSLLEAGEIPHP-LFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLL 665 (880)
Q Consensus 587 ~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a~~l~ 665 (880)
++++|...|+.....+ |+. ..+..+.......|++++|+..+++... +.|+...|..+-..+.+.|+.+.|...+
T Consensus 557 d~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 557 NGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred CHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888877654 332 2222233334445888888888888773 3566667777777788888888888888
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHHHHhccchhhhhhhcc
Q 002795 666 NALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAH 704 (880)
Q Consensus 666 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ea~~~~~ 704 (880)
++..+..+ +.+. .+..+...+...|+.++|+..+.
T Consensus 633 ~~AL~l~P--d~~~--a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 633 RAALELEP--NNSN--YQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred HHHHHhCC--CCHH--HHHHHHHHHHHCCCHHHHHHHHH
Confidence 88887774 3332 23345666777888888766543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-17 Score=188.97 Aligned_cols=296 Identities=13% Similarity=0.128 Sum_probs=200.1
Q ss_pred HHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHh
Q 002795 199 GLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYP--DIAAYHSVAVTLGQ 276 (880)
Q Consensus 199 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~p--d~~t~~~ll~~~~~ 276 (880)
.+...|++++|...|..+++..+ .+..++..+...+...|++++|..+++.+.......+ ...++..+...|.+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP----ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34455677777777777765433 3455677777777777777777777777665411111 12456666777777
Q ss_pred cCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC----HHHH
Q 002795 277 VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS----AATY 352 (880)
Q Consensus 277 ~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~ 352 (880)
.|++++|..+|.++.+. .+++..+++.++..|.+.|++++|.+.++.+.+.+..+. ...+
T Consensus 120 ~g~~~~A~~~~~~~l~~----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 183 (389)
T PRK11788 120 AGLLDRAEELFLQLVDE----------------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFY 183 (389)
T ss_pred CCCHHHHHHHHHHHHcC----------------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 77777777777777654 344566777777777777777777777777766543322 1234
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 002795 353 GLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNN 432 (880)
Q Consensus 353 ~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~ 432 (880)
..+...+.+.|++++|..+|+++.+.. +.+...+..+...|.+.|++++|.++|+++...+......+++.++.+|...
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 455666677778888888887777654 3345567777777888888888888888877654433345567777788888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh---cCCHHHHH
Q 002795 433 GRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR---NDMFSKAK 509 (880)
Q Consensus 433 g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~---~g~~~~A~ 509 (880)
|++++|...++++.. ..|+...+..+...+.+.|++++|..+|+.+.+. .|+..+++.++..+.. .|+..+++
T Consensus 263 g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-~P~~~~~~~l~~~~~~~~~~g~~~~a~ 338 (389)
T PRK11788 263 GDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRR-HPSLRGFHRLLDYHLAEAEEGRAKESL 338 (389)
T ss_pred CCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CcCHHHHHHHHHHhhhccCCccchhHH
Confidence 888888888888776 3455556677777788888888888888776653 4777777777777664 45778888
Q ss_pred HHHHHHHHcC
Q 002795 510 ELFEETTRAN 519 (880)
Q Consensus 510 ~lf~~m~~~g 519 (880)
.+|++|.+.+
T Consensus 339 ~~~~~~~~~~ 348 (389)
T PRK11788 339 LLLRDLVGEQ 348 (389)
T ss_pred HHHHHHHHHH
Confidence 8888888765
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-17 Score=175.50 Aligned_cols=433 Identities=15% Similarity=0.118 Sum_probs=351.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH
Q 002795 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI 237 (880)
Q Consensus 158 ~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~ 237 (880)
...|.+.+-+.|++.+|.+.-...-+.. +.+......+-..+.+..+++...+--...++..+ .-..+|..+.+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~----q~ae~ysn~aN~ 125 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP----QGAEAYSNLANI 125 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccc----hHHHHHHHHHHH
Confidence 4567788889999999988766655544 44455555555666666777766555555554433 345789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHH
Q 002795 238 LGKAGRPHEALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVV 316 (880)
Q Consensus 238 ~~~~g~~~~A~~lf~~m~~~~g~~p-d~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~t 316 (880)
+-..|++++|+.+++.+.+. .| ....|..+..++...|+.+.|...|.+..+ ..|+.+.
T Consensus 126 ~kerg~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alq-----------------lnP~l~c 185 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQ-----------------LNPDLYC 185 (966)
T ss_pred HHHhchHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh-----------------cCcchhh
Confidence 99999999999999999984 45 577899999999999999999999999987 6677766
Q ss_pred HHHHHHH-HhcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 002795 317 YNAVLNA-CVPSHQWKGVFWVFKQLRKSGLKPS-AATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAF 394 (880)
Q Consensus 317 y~~ll~~-~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~ 394 (880)
..+-+.- .-..|++.+|...|.+.... .|. ...|+.|.-.+-..|++..|.+.|++.++.. +.-...|-.|.+.|
T Consensus 186 a~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ 262 (966)
T KOG4626|consen 186 ARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVY 262 (966)
T ss_pred hhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHH
Confidence 5554444 44579999999999988764 343 4567788888889999999999999999865 22367888999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCCHHH
Q 002795 395 WEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-EITFTGLIISSMDGGHIDD 473 (880)
Q Consensus 395 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~a~~~~g~~~~ 473 (880)
...+.+++|+..|.+....... ....+..|...|-..|.++-|+..+++..+ ..|+ ...|+.|..++-..|++.+
T Consensus 263 ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~e 338 (966)
T KOG4626|consen 263 KEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTE 338 (966)
T ss_pred HHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHH
Confidence 9999999999999988765432 345566777888999999999999999987 4454 3579999999999999999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-HHHHHHHHHHHHHcCC
Q 002795 474 CISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-EYTYSSMLEASATAHQ 552 (880)
Q Consensus 474 A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd-~~t~~~ll~a~~~~~~ 552 (880)
|...|.....-++....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|...|+
T Consensus 339 a~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---------------v~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 339 AVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---------------VFPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---------------hChhhhhhhhhHHHHHHhccc
Confidence 99999999887778899999999999999999999999999988 5575 4578899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHhCCHHHHHHHH
Q 002795 553 WEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHP-LFFTEMLIQAIVQSNYEKAVALI 630 (880)
Q Consensus 553 ~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~l~ 630 (880)
+++|...+++.+. +.|+ ...|+.+-..|-..|++..|.+.+.+.+.. .|.- ...+++...|-.+|+..+|+.-+
T Consensus 404 l~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 404 LDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred HHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 9999999999875 7888 678999999999999999999999988774 4543 35566777777789999999999
Q ss_pred HHhhhCCCccCHH
Q 002795 631 NAMAYAPFHITER 643 (880)
Q Consensus 631 ~~m~~~~~~p~~~ 643 (880)
++.. .++||..
T Consensus 480 ~~aL--klkPDfp 490 (966)
T KOG4626|consen 480 RTAL--KLKPDFP 490 (966)
T ss_pred HHHH--ccCCCCc
Confidence 9987 5677654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-17 Score=185.99 Aligned_cols=302 Identities=10% Similarity=0.055 Sum_probs=167.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC---HH
Q 002795 274 LGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS---AA 350 (880)
Q Consensus 274 ~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~ 350 (880)
+...|++++|...|.++.+. .+.+..+|..+...+...|++++|..+++.+...+..++ ..
T Consensus 45 ~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 108 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKV----------------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLL 108 (389)
T ss_pred HHhcCChHHHHHHHHHHHhc----------------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 34455555555555555553 223344555555555555555555555555554321111 12
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002795 351 TYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 430 (880)
Q Consensus 351 t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~ 430 (880)
++..+...+.+.|+++.|..+|.++.+.. +.+..+++.++..|.+.|++++|.+.++.+.+.+..+....
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------- 178 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------- 178 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------
Confidence 33444444444455555555554444432 22344444444444444444444444444444332211100
Q ss_pred hCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002795 431 NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKE 510 (880)
Q Consensus 431 ~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~ 510 (880)
....+..+...+.+.|++++|..+|+++.+..+.+...+..+...|.+.|++++|.+
T Consensus 179 -----------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 235 (389)
T PRK11788 179 -----------------------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE 235 (389)
T ss_pred -----------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 011233444455556666666666666555333445566666677777777777777
Q ss_pred HHHHHHHcCCCCccccCCCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 002795 511 LFEETTRANSSGYTFLSGDGAPLKPD--EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 588 (880)
Q Consensus 511 lf~~m~~~g~~~~~~l~~~~~~~~Pd--~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~ 588 (880)
+|+++...+ |+ ..+++.+..+|...|++++|...++++.+. .|+...+..+...|.+.|++
T Consensus 236 ~~~~~~~~~---------------p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~ 298 (389)
T PRK11788 236 ALERVEEQD---------------PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGP 298 (389)
T ss_pred HHHHHHHHC---------------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCH
Confidence 777776632 43 345666777777777777777777777654 45555556667777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHhhhCCCccCHH
Q 002795 589 HLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV---QSNYEKAVALINAMAYAPFHITER 643 (880)
Q Consensus 589 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~g~~~~A~~l~~~m~~~~~~p~~~ 643 (880)
++|..+|+.+.+. .|+...++.++..++. .|+.++|+.++++|...++.|++.
T Consensus 299 ~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 299 EAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7777777776664 4777777766666654 346777777777777666665555
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-16 Score=167.65 Aligned_cols=448 Identities=13% Similarity=0.075 Sum_probs=354.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 002795 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV 272 (880)
Q Consensus 193 ~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~ 272 (880)
...|....-+.|++.+|++--..+....+ .+....-.+-.++....+.+....--....+ ..+.-..+|..+..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~----t~~~~llll~ai~~q~~r~d~s~a~~~~a~r--~~~q~ae~ysn~aN 124 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP----TNTERLLLLSAIFFQGSRLDKSSAGSLLAIR--KNPQGAEAYSNLAN 124 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC----Ccccceeeehhhhhcccchhhhhhhhhhhhh--ccchHHHHHHHHHH
Confidence 55666777788999999998776654433 2222233344456666677665544333333 23445779999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002795 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352 (880)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 352 (880)
.+-..|+++.|+.+|+.+.+. .+..+..|..+..++...|+.+.|.+.|.+..+. .|+....
T Consensus 125 ~~kerg~~~~al~~y~~aiel----------------~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca 186 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIEL----------------KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCA 186 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhc----------------CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhh
Confidence 999999999999999999986 4557889999999999999999999999998874 5765544
Q ss_pred HH-HHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002795 353 GL-AMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431 (880)
Q Consensus 353 ~~-ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~ 431 (880)
.+ +-..+-..|++.+|...|.+.++.. +-=.+.|+.|...+-.+|++..|+..|++....++.- ...|..|...|..
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f-~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF-LDAYINLGNVYKE 264 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc-hHHHhhHHHHHHH
Confidence 33 3344456799999999999988874 2236789999999999999999999999998876532 3346678999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002795 432 NGRWQDAMLVVEKIKSLRHSKPLE-ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKE 510 (880)
Q Consensus 432 ~g~~~~A~~l~~~m~~~~~~~p~~-~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~ 510 (880)
.+.++.|+..+.+... ..|+. ..+..+...|-..|.++.|+..|++..+..+.=...|+.|..++-..|+..+|..
T Consensus 265 ~~~~d~Avs~Y~rAl~---lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALN---LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred HhcchHHHHHHHHHHh---cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHH
Confidence 9999999999998876 55665 5677777788899999999999999988655568899999999999999999999
Q ss_pred HHHHHHHcCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCH
Q 002795 511 LFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKC 588 (880)
Q Consensus 511 lf~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~ 588 (880)
.|.+.+.. .| ...+.+.|...+...|..+.|..+|....+ +.|. ...++.|...|-..|++
T Consensus 342 cYnkaL~l---------------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 342 CYNKALRL---------------CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHHHHHh---------------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccH
Confidence 99999985 36 456889999999999999999999998875 5666 66788999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHH-HHHHHHHHhhhccCHHHHHHHHH
Q 002795 589 HLLEHAFDSLLEAGEIPH-PLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITER-QWTELFESNEDRISRDKLEKLLN 666 (880)
Q Consensus 589 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~ll~a~~~~~~~~~a~~l~~ 666 (880)
++|...+++..+ +.|+ ...|++|...|-..|+...|++.+.+.. .+.|+.. ..+.|-+.+...|++..|++-++
T Consensus 405 ~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI--~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 405 DDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI--QINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH--hcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 999999999887 5565 3478889999999999999999999887 4566654 46667778999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHHHH
Q 002795 667 ALCNCNAASSEITVSNLSRALHALC 691 (880)
Q Consensus 667 ~~~~~~~~p~~~~~~~~~~~~~~~~ 691 (880)
...+..+.-. -..-++...+..-|
T Consensus 481 ~aLklkPDfp-dA~cNllh~lq~vc 504 (966)
T KOG4626|consen 481 TALKLKPDFP-DAYCNLLHCLQIVC 504 (966)
T ss_pred HHHccCCCCc-hhhhHHHHHHHHHh
Confidence 9998876522 23334433333334
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-14 Score=172.62 Aligned_cols=510 Identities=11% Similarity=0.009 Sum_probs=338.3
Q ss_pred hhhccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-------
Q 002795 127 VLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKG------- 199 (880)
Q Consensus 127 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~------- 199 (880)
+.-++++.|+....+.+. ..+.+...+..+ ..+ +++.+|..+++++.... +-+..++..+...
T Consensus 89 l~~g~~~~A~~~~~kAv~-----ldP~n~~~~~~L-a~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l 158 (987)
T PRK09782 89 RHFGHDDRARLLLEDQLK-----RHPGDARLERSL-AAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNAL 158 (987)
T ss_pred HHCCCHHHHHHHHHHHHh-----cCcccHHHHHHH-HHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchh
Confidence 455788888888877655 333344444443 333 89999999999999876 5556666666665
Q ss_pred -HHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-
Q 002795 200 -LGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYT-KLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ- 276 (880)
Q Consensus 200 -~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~-~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~- 276 (880)
|.+. ++|.+.++ . +.. ...|+..+.. .+...|.+.|++++|+.++.++.+. -+.+..-+..|..+|..
T Consensus 159 ~y~q~---eqAl~AL~-l-r~~--~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~--~pl~~~~~~~L~~ay~q~ 229 (987)
T PRK09782 159 RLAQL---PVARAQLN-D-ATF--AASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ--NTLSAAERRQWFDVLLAG 229 (987)
T ss_pred hhhhH---HHHHHHHH-H-hhh--CCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHh
Confidence 5554 55555555 2 211 1223444444 4499999999999999999999985 23344456667677777
Q ss_pred cCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC-CCHHHHHH-
Q 002795 277 VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK-PSAATYGL- 354 (880)
Q Consensus 277 ~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~- 354 (880)
.++ +++..++.. . ...+...+..+...|.+.|+.++|..+++++...-.. |...++--
T Consensus 230 l~~-~~a~al~~~----~---------------lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~ 289 (987)
T PRK09782 230 QLD-DRLLALQSQ----G---------------IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL 289 (987)
T ss_pred hCH-HHHHHHhch----h---------------cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH
Confidence 366 777777443 1 5568889999999999999999999999888643221 22222111
Q ss_pred -----------------------------HHHHHHHcCChHHHHHH-----------------------------HHHHH
Q 002795 355 -----------------------------AMEVMLQSGKYDLVHEF-----------------------------FRKMA 376 (880)
Q Consensus 355 -----------------------------ll~a~~~~g~~~~A~~l-----------------------------~~~m~ 376 (880)
++.-+.+.++++.++++ +..|.
T Consensus 290 l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y 369 (987)
T PRK09782 290 LSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLY 369 (987)
T ss_pred HHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHH
Confidence 12233344444433333 22222
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhCCC---HHHHHHH----------
Q 002795 377 KSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQR--GVVGTASVYYELACCLCNNGR---WQDAMLV---------- 441 (880)
Q Consensus 377 ~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~Li~~~~~~g~---~~~A~~l---------- 441 (880)
+.. +-+....--+.-...+.|+.++|.++|+..... +-.++.....-++..|.+.+. ...+..+
T Consensus 370 ~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 370 QQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred hcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 221 112333333334456778899999999887762 223344445567777777665 3333222
Q ss_pred ------------HHHHHhcCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHH
Q 002795 442 ------------VEKIKSLRHSKP---LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFS 506 (880)
Q Consensus 442 ------------~~~m~~~~~~~p---~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~ 506 (880)
+.......+..| +...+..+..++.. ++.++|...|....... |+......+...+...|+++
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-Pd~~~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-PDAWQHRAVAYQAYQVEDYA 526 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-CchHHHHHHHHHHHHCCCHH
Confidence 222222122223 44566666666665 78888999777776633 45444444455556899999
Q ss_pred HHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc
Q 002795 507 KAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRA 585 (880)
Q Consensus 507 ~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~ 585 (880)
+|...|+++... .|+...+..+..++...|+.+.|...++...+.. |+ ...+..+...+.+.
T Consensus 527 eAi~~~rka~~~---------------~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 527 TALAAWQKISLH---------------DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHhcc---------------CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhC
Confidence 999999998663 3555667777788889999999999999998754 44 33333343444566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHH-HHhhhccCHHHHHHH
Q 002795 586 GKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELF-ESNEDRISRDKLEKL 664 (880)
Q Consensus 586 G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll-~a~~~~~~~~~a~~l 664 (880)
|++++|...|++..+.. |+...|..+...+.+.|++++|+..+++... ..|+...+...+ .++...|+.+.|+..
T Consensus 590 Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 590 GQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999988754 7788888888999999999999999999884 466655544444 468889999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHHHHhccchhhhhhhc
Q 002795 665 LNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSA 703 (880)
Q Consensus 665 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ea~~~~ 703 (880)
++...+..+ +++. .+..+...+...|++++|...+
T Consensus 666 l~~AL~l~P--~~~~--a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 666 LERAHKGLP--DDPA--LIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred HHHHHHhCC--CCHH--HHHHHHHHHHHCCCHHHHHHHH
Confidence 999998775 4433 3445677888999998887654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-14 Score=172.07 Aligned_cols=410 Identities=11% Similarity=0.031 Sum_probs=288.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHH
Q 002795 157 AIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLA 236 (880)
Q Consensus 157 ~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~ 236 (880)
.+......+.+.|++++|+..|+..... .|+...|..+...|...|++++|+..++.+++..+ .+..+|..+..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p----~~~~a~~~~a~ 202 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP----DYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC----CCHHHHHHHHH
Confidence 4456677888899999999999998865 46888899999999999999999999999987654 56788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCch-----hHhhhhhhcCCC---
Q 002795 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSK-----RIKNMHRKNWDP--- 308 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~-----~l~~m~~~~f~~--- 308 (880)
+|...|++++|+..|.......+. +......++..+.. ..+............. ....-|...+..
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~--~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGF--RNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPR 276 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--ccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcc
Confidence 999999999999988877654222 11111122211111 1111212211111100 000001010100
Q ss_pred ------C--CCCC-HHHHHHHHHH---HhcCCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002795 309 ------V--LEPD-LVVYNAVLNA---CVPSHQWKGVFWVFKQLRKSG-LKP-SAATYGLAMEVMLQSGKYDLVHEFFRK 374 (880)
Q Consensus 309 ------~--~~pd-~~ty~~ll~~---~~~~g~~~~A~~l~~~m~~~g-~~p-d~~t~~~ll~a~~~~g~~~~A~~l~~~ 374 (880)
. ..++ ...+..+... ....+++++|...|+.....+ ..| ....|..+...+...|++++|...|++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 277 PAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0 0000 0001111100 123468999999999998765 234 455677788888899999999999999
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC
Q 002795 375 MAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL 454 (880)
Q Consensus 375 m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~ 454 (880)
.++.. +.+...|..+...+...|++++|...|++..+.+.. +..+|..+...+...|++++|+..|++... ..|+
T Consensus 357 al~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~---l~P~ 431 (615)
T TIGR00990 357 SIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSID---LDPD 431 (615)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCcc
Confidence 99874 334678889999999999999999999999887643 567788899999999999999999999987 3454
Q ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCC
Q 002795 455 -EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL 533 (880)
Q Consensus 455 -~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~ 533 (880)
...+..+...+.+.|++++|...|+......+.+...|+.+...|...|++++|+..|++.....
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------------- 497 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE-------------- 497 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------------
Confidence 45677788889999999999999999988777788999999999999999999999999998843
Q ss_pred CCCH-H-------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002795 534 KPDE-Y-------TYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLE 600 (880)
Q Consensus 534 ~Pd~-~-------t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~ 600 (880)
|+. . .++..+..+...|++++|.+++++.... .|+ ...+..+...+...|++++|...|++..+
T Consensus 498 -p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 498 -KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred -CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 421 1 1122222233347777777777776653 343 34566666667777777777777776655
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-14 Score=172.29 Aligned_cols=96 Identities=9% Similarity=-0.050 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 002795 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV 270 (880)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~l 270 (880)
..+......+.+.|+++.|...|+.++. ..|+...|..+..+|.+.|++++|+..++...+. -+.+...|..+
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~-----~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~ 200 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIE-----CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRR 200 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHH
Confidence 4456777888899999999999998864 3467788999999999999999999999998873 23356788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 002795 271 AVTLGQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 271 l~~~~~~g~~~~A~~l~~~m~~~ 293 (880)
..+|...|++++|+.-|......
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~ 223 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCII 223 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999888766553
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-14 Score=173.45 Aligned_cols=335 Identities=12% Similarity=0.027 Sum_probs=267.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 002795 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (880)
Q Consensus 156 ~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll 235 (880)
.-...++..+.+.|++.+|+.+++...... +-+...+..++.++...|+++.|...++.++...| .+...+..+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P----~~~~a~~~la 117 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV----CQPEDVLLVA 117 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC----CChHHHHHHH
Confidence 345566777888999999999999988766 44555666666777789999999999999988765 4567888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHH
Q 002795 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315 (880)
Q Consensus 236 ~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ 315 (880)
..+...|++++|+..|++..+. .+.+...+..+...+...|++++|...+..+.... +.+..
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~----------------P~~~~ 179 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV----------------PPRGD 179 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----------------CCCHH
Confidence 9999999999999999999873 33457788888999999999999999999887642 23333
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 002795 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFW 395 (880)
Q Consensus 316 ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~ 395 (880)
.+..+ ..+...|++++|..+++.+.+....++...+..+..++...|++++|...++.+.+.. +.+...+..+...|.
T Consensus 180 a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~ 257 (656)
T PRK15174 180 MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYY 257 (656)
T ss_pred HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44333 3478899999999999998776433455555666778889999999999999999875 456788888999999
Q ss_pred hcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCC
Q 002795 396 EEGKINE----AVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-EITFTGLIISSMDGGH 470 (880)
Q Consensus 396 ~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~a~~~~g~ 470 (880)
..|++++ |...|++.....+. +...+..+...+...|++++|+..+++... ..|+ ...+..+..++.+.|+
T Consensus 258 ~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~ 333 (656)
T PRK15174 258 QSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQ 333 (656)
T ss_pred HcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCC
Confidence 9999985 89999999887643 567788899999999999999999999887 3344 3456677788999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002795 471 IDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 519 (880)
Q Consensus 471 ~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 519 (880)
+++|...|+.+....+.+...+..+..++...|+.++|...|++..+..
T Consensus 334 ~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 334 YTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999998887433344445556778899999999999999998853
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-14 Score=172.82 Aligned_cols=334 Identities=12% Similarity=0.035 Sum_probs=271.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 002795 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS 269 (880)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ 269 (880)
..-...++..+.+.|++.+|+.+++.++...+ .+...+..++.++...|++++|+..|+++.+. .+.+...|..
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p----~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~ 115 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAK----NGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLL 115 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC----CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHH
Confidence 33445667788899999999999999987665 34456666667778899999999999999984 3445677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH
Q 002795 270 VAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA 349 (880)
Q Consensus 270 ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 349 (880)
+...+...|++++|...|++..+. .+.+...|..+...+...|++++|...++.+...... +.
T Consensus 116 la~~l~~~g~~~~Ai~~l~~Al~l----------------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~ 178 (656)
T PRK15174 116 VASVLLKSKQYATVADLAEQAWLA----------------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RG 178 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CH
Confidence 889999999999999999999885 4556778889999999999999999999988765433 23
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002795 350 ATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCL 429 (880)
Q Consensus 350 ~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~ 429 (880)
..+..+ ..+...|++++|..+++.+.+....++...+..+..++...|++++|...|+++...+.. +...+..+...|
T Consensus 179 ~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l 256 (656)
T PRK15174 179 DMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAY 256 (656)
T ss_pred HHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 333333 347889999999999999888753344555666778899999999999999999987643 566778899999
Q ss_pred HhCCCHHH----HHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 002795 430 CNNGRWQD----AMLVVEKIKSLRHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDM 504 (880)
Q Consensus 430 ~~~g~~~~----A~~l~~~m~~~~~~~p~-~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~ 504 (880)
...|++++ |...|++... ..|+ ...+..+...+...|++++|...++......+.+...+..+..+|.+.|+
T Consensus 257 ~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~ 333 (656)
T PRK15174 257 YQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ 333 (656)
T ss_pred HHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 99999986 8999999887 3444 46788888999999999999999999988666678888889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002795 505 FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYT-YSSMLEASATAHQWEYFEYVYKGMALS 566 (880)
Q Consensus 505 ~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t-~~~ll~a~~~~~~~~~A~~l~~~m~~~ 566 (880)
+++|+..|+++.... |+... +..+..++...|+.++|...|++..+.
T Consensus 334 ~~eA~~~l~~al~~~---------------P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 334 YTAASDEFVQLAREK---------------GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHHhC---------------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999854 65543 444566788899999999999998865
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.4e-14 Score=169.26 Aligned_cols=303 Identities=8% Similarity=0.061 Sum_probs=167.5
Q ss_pred CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHH
Q 002795 153 SEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYT 232 (880)
Q Consensus 153 ~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~ 232 (880)
.++.-..-.+.+....|+.++|+.++....... +.+...+..+...+...|++++|..+++.++...| .+...+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~ 87 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP----QNDDYQR 87 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHH
Confidence 344455555666667778888887777776533 45555677777777788888888888887766543 4455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCC
Q 002795 233 KLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP 312 (880)
Q Consensus 233 ~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~p 312 (880)
.+...+...|++++|+..+++..+. .+.+.. +..+..++...|+.++|+..++++.+. .+.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~----------------~P~ 148 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR----------------APQ 148 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCC
Confidence 7777777788888888888877763 333444 767777777778888888888877775 344
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----HcCCh---HHHHHHHHHHHHc
Q 002795 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA------ATYGLAMEVML-----QSGKY---DLVHEFFRKMAKS 378 (880)
Q Consensus 313 d~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~------~t~~~ll~a~~-----~~g~~---~~A~~l~~~m~~~ 378 (880)
+...+..+...+...+..+.|+..++.... .|+. .....++.... ..+++ +.|...++.+.+.
T Consensus 149 ~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 149 TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 555556666667777777777777765442 2321 01111111111 11122 4455555555543
Q ss_pred -CCCccHH-H----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002795 379 -GEAIGAL-T----YKVLVRAFWEEGKINEAVAAVRNMEQRGVV-GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHS 451 (880)
Q Consensus 379 -g~~~d~~-~----~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~ 451 (880)
...|+.. . ....+.++...|++++|+..|+.+.+.+.. |+.. ...+...|...|++++|+..|+++......
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 1111110 0 011122333445566666666665554421 2211 111344555566666666666655441111
Q ss_pred CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 002795 452 KP--LEITFTGLIISSMDGGHIDDCISIFQHMKD 483 (880)
Q Consensus 452 ~p--~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~ 483 (880)
.+ .......+..++...|++++|..+++.+..
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~ 338 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTIN 338 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence 10 012233444445555555555555555554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=9e-14 Score=169.01 Aligned_cols=424 Identities=11% Similarity=0.036 Sum_probs=285.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002795 176 KFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255 (880)
Q Consensus 176 ~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~ 255 (880)
..++. .+.+ +.+.....-.+......|+.++|++++..+.... ..+...+..+..++.+.|++++|..+|++..
T Consensus 3 ~~~~~-~~~~-~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~----~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al 76 (765)
T PRK10049 3 SWLRQ-ALKS-ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM----QLPARGYAAVAVAYRNLKQWQNSLTLWQKAL 76 (765)
T ss_pred hhhhh-hhcc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455 3333 6788888888899999999999999999886422 2566779999999999999999999999988
Q ss_pred HcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHH
Q 002795 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFW 335 (880)
Q Consensus 256 ~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~ 335 (880)
+. -+.+...+..+...+...|++++|+..++++.+. .+.+.. |..+..++...|+.++|+.
T Consensus 77 ~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~----------------~P~~~~-~~~la~~l~~~g~~~~Al~ 137 (765)
T PRK10049 77 SL--EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG----------------APDKAN-LLALAYVYKRAGRHWDELR 137 (765)
T ss_pred Hh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHH-HHHHHHHHHHCCCHHHHHH
Confidence 74 3445777888889999999999999999999885 455566 8888888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccH------HHHHHHHHHHH-----hcCCH---H
Q 002795 336 VFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGA------LTYKVLVRAFW-----EEGKI---N 401 (880)
Q Consensus 336 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~------~~~~~Li~~~~-----~~g~~---~ 401 (880)
.++++.+.... +...+..+..++...+..+.|...++.+.. .|+. .....++..+. ..+++ +
T Consensus 138 ~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad 213 (765)
T PRK10049 138 AMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIAD 213 (765)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHH
Confidence 99999986422 455556677788888999999998876654 1221 12222333332 22334 7
Q ss_pred HHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 002795 402 EAVAAVRNMEQR-GVVGTAS-VY----YELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCI 475 (880)
Q Consensus 402 ~A~~~~~~m~~~-g~~p~~~-t~----~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~ 475 (880)
+|++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.......|+. ....+..+|...|++++|.
T Consensus 214 ~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~ 292 (765)
T PRK10049 214 RALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQ 292 (765)
T ss_pred HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHH
Confidence 889999998864 2222221 11 111344567799999999999998732222443 2223466899999999999
Q ss_pred HHHHHHhhCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH---HHHHHHHHHHH
Q 002795 476 SIFQHMKDHCEPN----IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE---YTYSSMLEASA 548 (880)
Q Consensus 476 ~i~~~m~~~~~pd----~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~---~t~~~ll~a~~ 548 (880)
.+|+.+....+.+ ...+..+..++...|++++|..+++.+...... +..+.+ ...-.|+. ..+..+...+.
T Consensus 293 ~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~-~~~~~~-~~~~~p~~~~~~a~~~~a~~l~ 370 (765)
T PRK10049 293 SILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPP-FLRLYG-SPTSIPNDDWLQGQSLLSQVAK 370 (765)
T ss_pred HHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCc-eEeecC-CCCCCCCchHHHHHHHHHHHHH
Confidence 9999987642212 456677778899999999999999999885310 000000 00112331 23344455555
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHhCCHHHHH
Q 002795 549 TAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEMLIQAIVQSNYEKAV 627 (880)
Q Consensus 549 ~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~ 627 (880)
..|++++|.++++++... .+-+...+..+...+...|++++|+..+++..... |+ ...+......+...|++++|.
T Consensus 371 ~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 371 YSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHH
Confidence 666666666666666543 12235555555556666666666666666655532 33 333444444555556666666
Q ss_pred HHHHHhh
Q 002795 628 ALINAMA 634 (880)
Q Consensus 628 ~l~~~m~ 634 (880)
.+++++.
T Consensus 448 ~~~~~ll 454 (765)
T PRK10049 448 VLTDDVV 454 (765)
T ss_pred HHHHHHH
Confidence 6666665
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-13 Score=142.50 Aligned_cols=421 Identities=12% Similarity=0.063 Sum_probs=300.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH--HHHhcCCHH-HHHHHHHHHHhCCch--------h
Q 002795 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV--TLGQVGLLK-ELVKLIERMRQKPSK--------R 297 (880)
Q Consensus 229 ~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~--~~~~~g~~~-~A~~l~~~m~~~g~~--------~ 297 (880)
.+=|.|+.+ ...|.+..+.-+|+.|..+ |++.+...-..|+. +|..+.+.- --.+.|-.|...|.. .
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 344555543 3456666677777777665 55555444433333 222222221 112344444444311 1
Q ss_pred HhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002795 298 IKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAK 377 (880)
Q Consensus 298 l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~ 377 (880)
+.++ +-+..+....+|.+||.+.++--..+.|.++|++-.....+.+..+||.+|.+-.-. ...++..+|+.
T Consensus 195 vAdL----~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMis 266 (625)
T KOG4422|consen 195 VADL----LFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMIS 266 (625)
T ss_pred HHHH----HHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHH
Confidence 1121 122266778899999999999999999999999999888889999999999876543 33889999999
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH-HHHHHHHHHHhc-C--
Q 002795 378 SGEAIGALTYKVLVRAFWEEGKINE----AVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQ-DAMLVVEKIKSL-R-- 449 (880)
Q Consensus 378 ~g~~~d~~~~~~Li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~-~A~~l~~~m~~~-~-- 449 (880)
..+.||..|+|+++.+.++.|+++. |.+++.+|++-|+.|...+|..+|..+++.++.. .|..++..+... .
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 9999999999999999999998875 5678899999999999999999999999988874 455555555431 1
Q ss_pred ---CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 450 ---HSKP-LEITFTGLIISSMDGGHIDDCISIFQHMKDH-----CEPN---IGTVNAMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 450 ---~~~p-~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~-----~~pd---~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 517 (880)
...| +...|...+..|.+..+.+.|.++..-+..+ +.|+ ..-|..+....|+....+.-...|+.|.-
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1223 3456889999999999999999999888764 4454 33466788888999999999999999987
Q ss_pred cCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-C---H-----
Q 002795 518 ANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAG-K---C----- 588 (880)
Q Consensus 518 ~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G-~---~----- 588 (880)
.- .-|+..+...+++|....+.++..-+++..++..|...+.....-++..+++.. . .
T Consensus 427 ~~-------------y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 427 SA-------------YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred ce-------------ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 64 678999999999999999999999999999988876555544444444444332 1 1
Q ss_pred H-----HHHHHH-------HHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhC----CCccCHHHHHHHHHHh
Q 002795 589 H-----LLEHAF-------DSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYA----PFHITERQWTELFESN 652 (880)
Q Consensus 589 ~-----~A~~~~-------~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~----~~~p~~~~~~~ll~a~ 652 (880)
. -|..++ .+|.... -.....+++...+.+.|..++|.+++...... +..|.-.....++.+.
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a 571 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSA 571 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHH
Confidence 0 011111 2333333 34457777888888999999999999988533 3345555556777777
Q ss_pred hhccCHHHHHHHHHHHHhCCCC
Q 002795 653 EDRISRDKLEKLLNALCNCNAA 674 (880)
Q Consensus 653 ~~~~~~~~a~~l~~~~~~~~~~ 674 (880)
....+...|...++.+...+..
T Consensus 572 ~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 572 KVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HhcCCHHHHHHHHHHHHHcCch
Confidence 8888888999999988776654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.8e-13 Score=151.22 Aligned_cols=566 Identities=10% Similarity=0.033 Sum_probs=345.2
Q ss_pred chhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhCCCHHHH
Q 002795 132 VQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSG--LMFTEGQMLKLLKGLGDKGSWRQA 209 (880)
Q Consensus 132 ~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~~A 209 (880)
.+.|...|..... ...++.-.+--=+......++|..|+.+|....... .+||.. ..+...+.++|+.+.|
T Consensus 146 ~~~A~a~F~~Vl~-----~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a 218 (1018)
T KOG2002|consen 146 MDDADAQFHFVLK-----QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKA 218 (1018)
T ss_pred HHHHHHHHHHHHh-----hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhH
Confidence 3455566654333 222222333333345556889999999998866533 334443 2334566788999999
Q ss_pred HHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002795 210 MSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGR---PHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKL 286 (880)
Q Consensus 210 ~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~---~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l 286 (880)
+..|..++...| .++.++-.|...-....+ +..+..++...-.. -+-|+...+.|...|.-.|++..+..+
T Consensus 219 ~~a~~ralqLdp----~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v~~l 292 (1018)
T KOG2002|consen 219 LLAFERALQLDP----TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERVWHL 292 (1018)
T ss_pred HHHHHHHHhcCh----hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHHHHH
Confidence 999998877654 344444444433333333 34455555554442 233566777888888888999999888
Q ss_pred HHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCC
Q 002795 287 IERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA--ATYGLAMEVMLQSGK 364 (880)
Q Consensus 287 ~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~ 364 (880)
...+...... -.--..+|--+.++|-..|++++|..+|.+..+. .|+. ..+-.+...+.+.|+
T Consensus 293 a~~ai~~t~~-------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~d 357 (1018)
T KOG2002|consen 293 AEHAIKNTEN-------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGD 357 (1018)
T ss_pred HHHHHHhhhh-------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhch
Confidence 8888764200 1112335777888888899999999988887764 3443 344557788889999
Q ss_pred hHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 002795 365 YDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEG----KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAML 440 (880)
Q Consensus 365 ~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~ 440 (880)
++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..++.+..+..+. |...|-.+...|....-+. ++.
T Consensus 358 le~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~~d~~~-sL~ 434 (1018)
T KOG2002|consen 358 LEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQTDPWA-SLD 434 (1018)
T ss_pred HHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHhcChHH-HHH
Confidence 999999999988874 556677777777777765 456777777777766533 5666766666655544433 366
Q ss_pred HHHHHHh---cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC----CCCCH------HHHHHHHHHHHhcCCHHH
Q 002795 441 VVEKIKS---LRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH----CEPNI------GTVNAMLKVYSRNDMFSK 507 (880)
Q Consensus 441 l~~~m~~---~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~----~~pd~------~~~~~Li~~~~~~g~~~~ 507 (880)
+|..... ..+..+-....|.+.......|.++.|...|...... ..++. .+--.+...+-..++++.
T Consensus 435 ~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~ 514 (1018)
T KOG2002|consen 435 AYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEV 514 (1018)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhH
Confidence 6654431 1233355667888888888889999998888887654 22222 222334555556678888
Q ss_pred HHHHHHHHHHcCCCCccccCCCCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002795 508 AKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAG 586 (880)
Q Consensus 508 A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~-t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G 586 (880)
|.+.|..+++.. |.-+ .|..++......+...+|...++..... ...++..++.+...|.+..
T Consensus 515 A~e~Yk~Ilkeh---------------p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 515 AEEMYKSILKEH---------------PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHHHHHHHC---------------chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhh
Confidence 888888888854 6544 3444442222336777777777776643 2334444444444666666
Q ss_pred CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHh------------CCHHHHHHHHHHhhhCCCccCH-HHHHHHHHHh
Q 002795 587 KCHLLEHAFDSLLEA-GEIPHPLFFTEMLIQAIVQ------------SNYEKAVALINAMAYAPFHITE-RQWTELFESN 652 (880)
Q Consensus 587 ~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~------------g~~~~A~~l~~~m~~~~~~p~~-~~~~~ll~a~ 652 (880)
.+.-|..-|...... ...+|..+.-.|...+.+. +..++|+++|.+.+.. .|.. ..-+-+--..
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVL 656 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVL 656 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccchhhhh
Confidence 677777766655553 2224555444444433321 2356777777777632 2221 1112222234
Q ss_pred hhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHhccchhhhhhhccccccccccccccchhhhhhcccccCCCc
Q 002795 653 EDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFGSQAIDISPLHGIHEAFDVKETENVPS 732 (880)
Q Consensus 653 ~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~~~~v~~~~l~~~~~~f~~~~~~~~~~ 732 (880)
+..|.+..|..+|.++.++... ...+ +..+.|+|..+|++..|++++.. +.++ |...+...+..
T Consensus 657 A~kg~~~~A~dIFsqVrEa~~~-~~dv---~lNlah~~~e~~qy~~AIqmYe~-----------~lkk-f~~~~~~~vl~ 720 (1018)
T KOG2002|consen 657 AEKGRFSEARDIFSQVREATSD-FEDV---WLNLAHCYVEQGQYRLAIQMYEN-----------CLKK-FYKKNRSEVLH 720 (1018)
T ss_pred hhccCchHHHHHHHHHHHHHhh-CCce---eeeHHHHHHHHHHHHHHHHHHHH-----------HHHH-hcccCCHHHHH
Confidence 5667777788888888877653 1222 33447788888888888887777 5555 33334444444
Q ss_pred hhhhHhh-hcccCCCCCCCCc-cCCccCcccc
Q 002795 733 SSASMMF-ENADLGADPLPQK-TDVAVDIDSI 762 (880)
Q Consensus 733 ~~~~i~~-~G~~~~Al~lf~~-~~~~Pd~~t~ 762 (880)
+-+-... .|...+|..-... ..+.|...++
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARHLAPSNTSV 752 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCccchH
Confidence 4444444 6666666665555 5566655544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-12 Score=135.06 Aligned_cols=440 Identities=12% Similarity=0.137 Sum_probs=231.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH
Q 002795 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI 237 (880)
Q Consensus 158 ~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~ 237 (880)
-+.|+ -+...+.+.++.-+|+.|.+.|++.+...-..|++.-+-.+.-+--..-+++.+..... ...+..+|
T Consensus 119 E~nL~-kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~-~E~S~~sW------ 190 (625)
T KOG4422|consen 119 ENNLL-KMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNF-GEDSTSSW------ 190 (625)
T ss_pred hhHHH-HHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccc-cccccccc------
Confidence 34444 34567889999999999999999988887777776554332211111112222211111 01111222
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHH
Q 002795 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY 317 (880)
Q Consensus 238 ~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty 317 (880)
+.|.+.+ -+|+..++ +..||.+||.++|+--..+.|.++|.+..... .+.+..+|
T Consensus 191 --K~G~vAd--L~~E~~PK------T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k---------------~kv~~~aF 245 (625)
T KOG4422|consen 191 --KSGAVAD--LLFETLPK------TDETVSIMIAGLCKFSSLERARELYKEHRAAK---------------GKVYREAF 245 (625)
T ss_pred --ccccHHH--HHHhhcCC------CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh---------------heeeHHhh
Confidence 2343332 23333322 45566666666666666666666666665544 55566666
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHcCCCccHHHHHHHHHH
Q 002795 318 NAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDL----VHEFFRKMAKSGEAIGALTYKVLVRA 393 (880)
Q Consensus 318 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~----A~~l~~~m~~~g~~~d~~~~~~Li~~ 393 (880)
|.+|.+-. +....+++.+|....++||..|||+++++.++.|+++. |.+++.+|++.|+.|...+|..+|..
T Consensus 246 N~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~ 321 (625)
T KOG4422|consen 246 NGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKN 321 (625)
T ss_pred hhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHH
Confidence 66665532 12225566666666666666666666666666665543 34555666666666666666666666
Q ss_pred HHhcCCHHH-HHHHHHHHHH----CCCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CCCC---HHHH
Q 002795 394 FWEEGKINE-AVAAVRNMEQ----RGVVG----TASVYYELACCLCNNGRWQDAMLVVEKIKSLRH---SKPL---EITF 458 (880)
Q Consensus 394 ~~~~g~~~~-A~~~~~~m~~----~g~~p----~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~---~~p~---~~t~ 458 (880)
+++.++..+ |..++.++.. +...| +...|...+..|....+.+-|.++..-+....+ +.|+ .+-|
T Consensus 322 f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYy 401 (625)
T KOG4422|consen 322 FKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYY 401 (625)
T ss_pred hcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHH
Confidence 666555432 3333333332 11111 223344444445555555555555554443111 1122 1224
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCC------CCC
Q 002795 459 TGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSG------DGA 531 (880)
Q Consensus 459 ~~ll~a~~~~g~~~~A~~i~~~m~~~-~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~------~~~ 531 (880)
..+....|....++.-...|+.|.-. .-|+..+...++++..-.|+++-.-+++.+|...|+.....+.. ...
T Consensus 402 r~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 402 RKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 45555556666666666666666553 45555666666666666666666666666665554110000000 000
Q ss_pred CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH
Q 002795 532 PLKP---DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA-GEIPHP 607 (880)
Q Consensus 532 ~~~P---d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~-g~~p~~ 607 (880)
...| ...-+.....-|+. .-.+.....-.+|.+..+. ....+.+...+.+.|..++|.++|..+.+. +-.|-.
T Consensus 482 k~hp~tp~r~Ql~~~~ak~aa-d~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~ 558 (625)
T KOG4422|consen 482 KLHPLTPEREQLQVAFAKCAA-DIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRS 558 (625)
T ss_pred CCCCCChHHHHHHHHHHHHHH-HHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCC
Confidence 1222 22223332222221 1111122222344444443 445566666788999999999999988654 344555
Q ss_pred HHHH---HHHHHHHHhCCHHHHHHHHHHhhhCC
Q 002795 608 LFFT---EMLIQAIVQSNYEKAVALINAMAYAP 637 (880)
Q Consensus 608 ~~~~---~ll~~~~~~g~~~~A~~l~~~m~~~~ 637 (880)
...| .++....+......|+..++-|...+
T Consensus 559 p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 559 PLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 5555 55666667778888998888886443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-12 Score=145.48 Aligned_cols=464 Identities=11% Similarity=0.053 Sum_probs=307.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002795 171 TAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRI 250 (880)
Q Consensus 171 ~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~l 250 (880)
+..++.++...-... +-++...+.|...|.-.|++..+..+.+.++....... .-...|-.+..+|-..|++++|...
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~-~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS-IKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHhhccHHHHHHH
Confidence 334444444443333 34566666666666666666666666666654331100 1123455666666666777777766
Q ss_pred HHHHHHcCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCC
Q 002795 251 FNLMLEDCNLYPDIAA--YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSH 328 (880)
Q Consensus 251 f~~m~~~~g~~pd~~t--~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g 328 (880)
|.+..+. .||..+ +--|...+.+.|+++.+...|+...+. .+-+..+.-.|...|+..+
T Consensus 330 Y~~s~k~---~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~----------------~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 330 YMESLKA---DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ----------------LPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred HHHHHcc---CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh----------------CcchHHHHHHHHhHHHhhh
Confidence 6665542 344322 334555666667777777666666654 3444555555555566554
Q ss_pred ----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH----HHcCCCccHHHHHHHHHHHHhcCCH
Q 002795 329 ----QWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKM----AKSGEAIGALTYKVLVRAFWEEGKI 400 (880)
Q Consensus 329 ----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m----~~~g~~~d~~~~~~Li~~~~~~g~~ 400 (880)
..+.|..++.+..+.- .-|...|-.+...+-. ++...+..+|... ...+.++-+...|.+...+...|.+
T Consensus 391 ~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~ 468 (1018)
T KOG2002|consen 391 KKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNI 468 (1018)
T ss_pred hhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcCh
Confidence 3455555555555432 2255555555544433 3333335555443 3445456678888899999999999
Q ss_pred HHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhCCC
Q 002795 401 NEAVAAVRNMEQR---GVVGTA------SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT-FTGLIISSMDGGH 470 (880)
Q Consensus 401 ~~A~~~~~~m~~~---g~~p~~------~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t-~~~ll~a~~~~g~ 470 (880)
+.|...|...... ...++. .+-..+..++-..++.+.|...|..+.+ ..|.-+. |..+..+.-..+.
T Consensus 469 ~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk---ehp~YId~ylRl~~ma~~k~~ 545 (1018)
T KOG2002|consen 469 EKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK---EHPGYIDAYLRLGCMARDKNN 545 (1018)
T ss_pred HHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH---HCchhHHHHHHhhHHHHhccC
Confidence 9999998887765 122222 2223367777788889999999999887 4565543 4444433445578
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 002795 471 IDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA 550 (880)
Q Consensus 471 ~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~ 550 (880)
..+|...+.........++..++-+...+.+...+..|.+-|....+.- ...+|.++.-+|.+.|...
T Consensus 546 ~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~------------~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 546 LYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT------------STKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred cHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh------------ccCCchhHHHHhhHHHHHH
Confidence 8889999998888666777788888888888888888888888777753 1347888877777766543
Q ss_pred ------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002795 551 ------------HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAI 618 (880)
Q Consensus 551 ------------~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 618 (880)
+..++|+++|.+.++.. +-|.+.-|-+...++.+|++.+|..+|.+..+... -...+|-++..+|.
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYV 691 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHH
Confidence 45789999999888642 44677777788889999999999999999998653 12337888999999
Q ss_pred HhCCHHHHHHHHHHhhhCCC-ccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 002795 619 VQSNYEKAVALINAMAYAPF-HITERQWTELFESNEDRISRDKLEKLLNALCNCNAA 674 (880)
Q Consensus 619 ~~g~~~~A~~l~~~m~~~~~-~p~~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~ 674 (880)
.+|++..|+++|+.....-. +-++.....|-+++...+.+..+...+.......+.
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 99999999999998764333 445666777778888999999888887777666644
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-11 Score=145.87 Aligned_cols=449 Identities=11% Similarity=0.044 Sum_probs=311.8
Q ss_pred cHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHH
Q 002795 154 EAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233 (880)
Q Consensus 154 ~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~ 233 (880)
.+.....-+-...+.|++..|+..|++..+.. +-+......++..+...|+.++|+..++..+.. ..........
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p----~n~~~~~lla 107 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS----MNISSRGLAS 107 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC----CCCCHHHHHH
Confidence 44444455556678999999999999998775 333223338888888999999999999988621 1134445555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCC
Q 002795 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313 (880)
Q Consensus 234 Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd 313 (880)
+...|...|++++|+++|+++.+. .+-+...+..++..+...++.++|++.+..+.. ..|+
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~-----------------~dp~ 168 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAE-----------------RDPT 168 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc-----------------cCcc
Confidence 577888999999999999999985 344567777888899999999999999999987 4566
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHH------H
Q 002795 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALT------Y 387 (880)
Q Consensus 314 ~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~------~ 387 (880)
...+-.++..+...++..+|+..++++.+.. +-+...+..+..++.+.|-...|.++..+-... +.+.... .
T Consensus 169 ~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~ 246 (822)
T PRK14574 169 VQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAA 246 (822)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHH
Confidence 6666445444555677767999999999874 236777788889999999998888776653321 1111100 1
Q ss_pred HHHHHHH-----HhcCC---HHHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Q 002795 388 KVLVRAF-----WEEGK---INEAVAAVRNMEQR-GVVGTA-S----VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 453 (880)
Q Consensus 388 ~~Li~~~-----~~~g~---~~~A~~~~~~m~~~-g~~p~~-~----t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p 453 (880)
..+|+.- ....+ .+.|+.-++.+... +..|.. . ...-.+-++...|++.+++..|+.|.. .+...
T Consensus 247 a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~-~~~~~ 325 (822)
T PRK14574 247 AEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA-EGYKM 325 (822)
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh-cCCCC
Confidence 1111110 01122 45566666666653 222322 1 122356678899999999999999998 45433
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccc-
Q 002795 454 LEITFTGLIISSMDGGHIDDCISIFQHMKDH------CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFL- 526 (880)
Q Consensus 454 ~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~------~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l- 526 (880)
-..+-.++.++|...+.+++|..+|..+... .+++......|..+|...+++++|..+++.+.+.. + |..-
T Consensus 326 P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~-p-~~~~~ 403 (822)
T PRK14574 326 PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT-P-YQVGV 403 (822)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-C-cEEec
Confidence 3457889999999999999999999998662 23355556789999999999999999999999842 2 2111
Q ss_pred -CCCCCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 002795 527 -SGDGAPLKPDEYT-YSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEI 604 (880)
Q Consensus 527 -~~~~~~~~Pd~~t-~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~ 604 (880)
.+......||-.. +..++..+.-.|++.+|++.++.+.... +-|......+-..+...|.+.+|+..++..... .
T Consensus 404 ~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~ 480 (822)
T PRK14574 404 YGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--A 480 (822)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--C
Confidence 1112223344333 3444556677788888888888886532 345777777777788888888888888665543 3
Q ss_pred CC-HHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 002795 605 PH-PLFFTEMLIQAIVQSNYEKAVALINAMA 634 (880)
Q Consensus 605 p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 634 (880)
|+ ..+.......+...|++.+|..+.+...
T Consensus 481 P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 481 PRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred CccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 43 3344456666666688888888777765
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-11 Score=144.57 Aligned_cols=450 Identities=10% Similarity=0.006 Sum_probs=322.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 002795 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKS-RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (880)
Q Consensus 193 ~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d-~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll 271 (880)
|...| ...+.|++..|+..|+.+++..+. + ..++ .++..+...|+.++|+..+++... ..+........+.
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~~P~----~~~av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA 109 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKAGPL----QSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAA 109 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhhCcc----chhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHH
Confidence 44444 345889999999999999876542 2 2334 888888999999999999999873 2223344444446
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 002795 272 VTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAAT 351 (880)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 351 (880)
..+...|++++|+++|+++.+. .+-|...+..++..+...++.++|+..+.++... .|+...
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~----------------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~ 171 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKK----------------DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQN 171 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHH
Confidence 6888889999999999999986 4556677778888899999999999999999875 566666
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH------HHH
Q 002795 352 YGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY------YEL 425 (880)
Q Consensus 352 ~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------~~L 425 (880)
+..++..+...++..+|...++++.+.. +-+...+..++.+..+.|-...|.++..+-... ..+...-+ ..+
T Consensus 172 ~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~ 249 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQ 249 (822)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHH
Confidence 6555555555677767999999999985 556888889999999999999999877653311 11111001 111
Q ss_pred HHHH-----HhCCC---HHHHHHHHHHHHhcCCCCCCHH-----HHHHHHHHHHhCCCHHHHHHHHHHHhh-CCCCCHHH
Q 002795 426 ACCL-----CNNGR---WQDAMLVVEKIKSLRHSKPLEI-----TFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGT 491 (880)
Q Consensus 426 i~~~-----~~~g~---~~~A~~l~~~m~~~~~~~p~~~-----t~~~ll~a~~~~g~~~~A~~i~~~m~~-~~~pd~~~ 491 (880)
+..- ....+ .+.|+.-++.+....+..|... ...-.+-++...|++.++++.|+.+.. +.+.-..+
T Consensus 250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 250 VRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 1110 01122 3456666666554333334322 223455678889999999999999997 44445567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----
Q 002795 492 VNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSG---- 567 (880)
Q Consensus 492 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g---- 567 (880)
-..+.++|...+++++|..+|..+...... .....++......|.-++...+++++|..+++.+.+.-
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~--------~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~ 401 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGK--------TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQV 401 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhcccc--------ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEE
Confidence 788999999999999999999999774300 00112345556789999999999999999999998731
Q ss_pred ---------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCC
Q 002795 568 ---------CQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAP 637 (880)
Q Consensus 568 ---------~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~ 637 (880)
..|| ...+..++..+...|++.+|++.++.+.... +-|......+...+...|.+.+|...++... .
T Consensus 402 ~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~--~ 478 (822)
T PRK14574 402 GVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE--S 478 (822)
T ss_pred eccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh--h
Confidence 1222 2234445666789999999999999997743 3466677777888888899999999997766 3
Q ss_pred CccCHH-HHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 002795 638 FHITER-QWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNL 683 (880)
Q Consensus 638 ~~p~~~-~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~ 683 (880)
+.|+.. +......+....+++.+|..++..+.+.. |++..+..+
T Consensus 479 l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~--Pe~~~~~~l 523 (822)
T PRK14574 479 LAPRSLILERAQAETAMALQEWHQMELLTDDVISRS--PEDIPSQEL 523 (822)
T ss_pred hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC--CCchhHHHH
Confidence 466654 34455556778899999999999999888 455555554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.7e-13 Score=137.95 Aligned_cols=483 Identities=12% Similarity=0.101 Sum_probs=323.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCC--HHHHHH
Q 002795 157 AIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQM-LKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKS--RFVYTK 233 (880)
Q Consensus 157 ~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~-~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d--~~~~~~ 233 (880)
....|...+..+..+.+|+..|+-+.+...-|+...+ ..+...+.+.+.+.+|...+...+.+-|... .+ ..+.|.
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin-k~~rikil~n 281 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN-KDMRIKILNN 281 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc-hhhHHHHHhh
Confidence 4445666777788899999999998887766666543 3455667788889999999998877654322 22 345666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCC
Q 002795 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313 (880)
Q Consensus 234 Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd 313 (880)
+.-.+.+.|.++.|+..|+...+. .|+..+--.|+-++..-|+.++..+.|..|...++..-.+-| ..+...|+
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky---i~~~ddp~ 355 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY---IKEKDDPD 355 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc---cCCcCCcc
Confidence 666778899999999999998874 688777656666666789999999999999876532111111 12224455
Q ss_pred HHHHHHHHHH-----HhcC--CCHHHHHHHHHHHHHCCCCCCHHH-------------H--------HHHHHHHHHcCCh
Q 002795 314 LVVYNAVLNA-----CVPS--HQWKGVFWVFKQLRKSGLKPSAAT-------------Y--------GLAMEVMLQSGKY 365 (880)
Q Consensus 314 ~~ty~~ll~~-----~~~~--g~~~~A~~l~~~m~~~g~~pd~~t-------------~--------~~ll~a~~~~g~~ 365 (880)
....|-.|.. .-+. .+.++++-.-.++..--+.|+-.. | ..-..-+.+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 5554443332 2111 122333332223322222332110 0 1123457899999
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 002795 366 DLVHEFFRKMAKSGEAIGALTYKVLVRAFWE--EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVE 443 (880)
Q Consensus 366 ~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~ 443 (880)
+.|.+++.-..+..-..-...-|.|...+.- ..++..|..+-+.....+-- +......-...-..+|+++.|...++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHH
Confidence 9999999888876533333344444444433 33677787777766644321 22222212223457899999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 002795 444 KIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGY 523 (880)
Q Consensus 444 ~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~ 523 (880)
+... ....-....|| +--.+-..|++++|...|-++..-+..+..+.-.+...|-...+...|++++-+....
T Consensus 515 eal~-ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl----- 587 (840)
T KOG2003|consen 515 EALN-NDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL----- 587 (840)
T ss_pred HHHc-CchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-----
Confidence 8876 21111112222 2234677899999999998887755678888888888999999999999999877662
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 002795 524 TFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGE 603 (880)
Q Consensus 524 ~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~ 603 (880)
+.-|+...+.|...|-+.|+-.+|.+.+-.--. -++.+..+...|...|....-++.+...|++..- +
T Consensus 588 ---------ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 588 ---------IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred ---------CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 333788888999999999999999988765432 2456677888888888899999999999997654 5
Q ss_pred CCCHHHHHHHHHHHHHh-CCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHH
Q 002795 604 IPHPLFFTEMLIQAIVQ-SNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNAL 668 (880)
Q Consensus 604 ~p~~~~~~~ll~~~~~~-g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a~~l~~~~ 668 (880)
.|+..-|..|+..|++. |++.+|+++++...+ .+.-|...+..|++-|...|..+ +.+.-.++
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl~d-~key~~kl 719 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGLKD-AKEYADKL 719 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccchh-HHHHHHHH
Confidence 69999999888888776 899999999998864 35556666777778888777654 33333333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-10 Score=130.21 Aligned_cols=558 Identities=14% Similarity=0.073 Sum_probs=373.3
Q ss_pred hhhhHHhHHHHhhhhhhccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHH
Q 002795 113 LRELKEMFEKDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQ 192 (880)
Q Consensus 113 l~~l~e~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~ 192 (880)
.+.+..++..-......++.+.|..++..+|. ..+....+|..|..++-.+|+.++++..+-...... +-|...
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIk-----qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~ 209 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIK-----QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYEL 209 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHH
Confidence 33477777776666667999999999988888 455667899999999999999999988776655444 567799
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHH-HH----
Q 002795 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIA-AY---- 267 (880)
Q Consensus 193 ~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~-t~---- 267 (880)
|..+.....+.|.+++|.-.|.++++..| ++...+-.-+..|-+.|+...|..-|.++... .+|... -+
T Consensus 210 W~~ladls~~~~~i~qA~~cy~rAI~~~p----~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~--~p~~d~er~~d~i 283 (895)
T KOG2076|consen 210 WKRLADLSEQLGNINQARYCYSRAIQANP----SNWELIYERSSLYQKTGDLKRAMETFLQLLQL--DPPVDIERIEDLI 283 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCC----cchHHHHHHHHHHHHhChHHHHHHHHHHHHhh--CCchhHHHHHHHH
Confidence 99999999999999999999999998766 45555555667889999999999999999885 333322 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC
Q 002795 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (880)
Q Consensus 268 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (880)
-.++..+...++-+.|.+.++.....+. ..-+...++.++..+.+..+++.|......+......+
T Consensus 284 ~~~~~~~~~~~~~e~a~~~le~~~s~~~--------------~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~ 349 (895)
T KOG2076|consen 284 RRVAHYFITHNERERAAKALEGALSKEK--------------DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEK 349 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhcc--------------ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCC
Confidence 2345556667777888888888776331 34455667888888999999999999988887622222
Q ss_pred CHHHH--------------------------HHHHHHHHHcCChHHHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCC
Q 002795 348 SAATY--------------------------GLAMEVMLQSGKYDLVHEFFRKMAKSG--EAIGALTYKVLVRAFWEEGK 399 (880)
Q Consensus 348 d~~t~--------------------------~~ll~a~~~~g~~~~A~~l~~~m~~~g--~~~d~~~~~~Li~~~~~~g~ 399 (880)
|..-+ .-++-++.+....+....+...+.+.. +.-+...|.-+..+|...|+
T Consensus 350 d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~ 429 (895)
T KOG2076|consen 350 DDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGK 429 (895)
T ss_pred ChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhccc
Confidence 22111 112333445555666666666777766 44457788999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHH
Q 002795 400 INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-ITFTGLIISSMDGGHIDDCISIF 478 (880)
Q Consensus 400 ~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~-~t~~~ll~a~~~~g~~~~A~~i~ 478 (880)
+.+|+.+|..+......-+...|..+..+|...|.+++|+..|+.... ..|+. ..-.+|-..+-+.|+.++|.+.+
T Consensus 430 ~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~---~~p~~~D~Ri~Lasl~~~~g~~EkalEtL 506 (895)
T KOG2076|consen 430 YKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI---LAPDNLDARITLASLYQQLGNHEKALETL 506 (895)
T ss_pred HHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCchhhhhhHHHHHHhcCCHHHHHHHH
Confidence 999999999999887777788899999999999999999999999987 34443 23455666678999999999999
Q ss_pred HHHhh---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc---------cCCCCCCCCCCHHHH
Q 002795 479 QHMKD---------HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTF---------LSGDGAPLKPDEYTY 540 (880)
Q Consensus 479 ~~m~~---------~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~---------l~~~~~~~~Pd~~t~ 540 (880)
..+.. ...|+........+.|.+.|+.++=+.+-..|+.....-.-. ......+......+.
T Consensus 507 ~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~ 586 (895)
T KOG2076|consen 507 EQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELL 586 (895)
T ss_pred hcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhH
Confidence 98643 245566666677788888999887666655555432100000 000111222334444
Q ss_pred HHHHHHHHHcCCHHHHHH------HHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCH---
Q 002795 541 SSMLEASATAHQWEYFEY------VYKGMALSGCQLDQT--KHAWLLVEASRAGKCHLLEHAFDSLLEAGE--IPHP--- 607 (880)
Q Consensus 541 ~~ll~a~~~~~~~~~A~~------l~~~m~~~g~~pd~~--~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~--~p~~--- 607 (880)
...+.+-.+.++...... .+.--...|+..+.. .+.-++..+++.|++++|+.+...+....+ .++.
T Consensus 587 ~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k 666 (895)
T KOG2076|consen 587 KQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRK 666 (895)
T ss_pred HHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHH
Confidence 445555555444222211 111222234555433 456677788899999999999887776432 1222
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhC-CCc--cC-HHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 002795 608 LFFTEMLIQAIVQSNYEKAVALINAMAYA-PFH--IT-ERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNL 683 (880)
Q Consensus 608 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-~~~--p~-~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~ 683 (880)
..=+.++.+.+..+++..|+..++.|... ++. |. ...|+..++.....++-.--.+++..+...... +.+.. .
T Consensus 667 ~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~-~~~~l--~ 743 (895)
T KOG2076|consen 667 ELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKD-DTPPL--A 743 (895)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-CCcce--e
Confidence 12345677777789999999999998743 222 21 224555555555555544444555444444433 11111 1
Q ss_pred HHHHHHHHhccchhhhhhh
Q 002795 684 SRALHALCRSEKERDLSSS 702 (880)
Q Consensus 684 ~~~~~~~~~~g~~~ea~~~ 702 (880)
+...|-+..++.+..|+..
T Consensus 744 ~i~gh~~~~~~s~~~Al~~ 762 (895)
T KOG2076|consen 744 LIYGHNLFVNASFKHALQE 762 (895)
T ss_pred eeechhHhhccchHHHHHH
Confidence 1123344455555555443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.8e-09 Score=111.14 Aligned_cols=495 Identities=11% Similarity=0.064 Sum_probs=339.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 002795 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (880)
Q Consensus 156 ~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll 235 (880)
..|-...+-=...+++..|..+|+..+... .-+...|..-+.+=.+......|+.+++.++...|+ --..|-..+
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR----VdqlWyKY~ 148 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR----VDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch----HHHHHHHHH
Confidence 344444444445666778888888887766 456777888888888888899999999988876553 224566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHH
Q 002795 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315 (880)
Q Consensus 236 ~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ 315 (880)
.+=-..|++..|.++|++-.+ ..|+...|++.|..=.+...++.|..+|+..+- +.|++.
T Consensus 149 ymEE~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~-----------------~HP~v~ 208 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVL-----------------VHPKVS 208 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-----------------ecccHH
Confidence 666777999999999998875 579999999999998999999999999999876 679999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcc--HHHHHHHH
Q 002795 316 VYNAVLNACVPSHQWKGVFWVFKQLRKS-GL-KPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIG--ALTYKVLV 391 (880)
Q Consensus 316 ty~~ll~~~~~~g~~~~A~~l~~~m~~~-g~-~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d--~~~~~~Li 391 (880)
+|--....-.+.|+...|..+|....+. |- ..+...|.+...-=.++..++.|.-+|...+.. ++.+ ...|....
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYT 287 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHH
Confidence 9988888888899999999999887653 11 012223333333334677788899999888876 3333 44555555
Q ss_pred HHHHhcCCHHHHHH--------HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHH-------
Q 002795 392 RAFWEEGKINEAVA--------AVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI------- 456 (880)
Q Consensus 392 ~~~~~~g~~~~A~~--------~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~------- 456 (880)
..--+-|+...... -|+.+...++. |-.+|--.+..-...|+.+...++|++... +++|-..
T Consensus 288 ~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~W~RY 364 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRYWRRY 364 (677)
T ss_pred HHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHHHHHH
Confidence 55455566443332 24455555533 556677777777788999999999999885 5555321
Q ss_pred HHHHH---HHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCccccCCC
Q 002795 457 TFTGL---IISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYS----RNDMFSKAKELFEETTRANSSGYTFLSGD 529 (880)
Q Consensus 457 t~~~l---l~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~----~~g~~~~A~~lf~~m~~~g~~~~~~l~~~ 529 (880)
.|..+ +-.-....+++.++++|+...+-+|....|+.-+--+|+ ++.++..|.+++...+.
T Consensus 365 IYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG------------ 432 (677)
T KOG1915|consen 365 IYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG------------ 432 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc------------
Confidence 12111 111234688899999999988877777777777666665 56788899999888765
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH
Q 002795 530 GAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEAG-EIPHP 607 (880)
Q Consensus 530 ~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g-~~p~~ 607 (880)
.-|-..+|...|..=.+.+.++.+..++++.++- .|. -.++......=...|+.+.|..+|....... +....
T Consensus 433 ---~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 433 ---KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred ---cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 4588889988888888889999999999998864 443 4555555544567899999999999877642 33455
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHH--Hh---hhcc-----------CHHHHHHHHHHHHhC
Q 002795 608 LFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFE--SN---EDRI-----------SRDKLEKLLNALCNC 671 (880)
Q Consensus 608 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~--a~---~~~~-----------~~~~a~~l~~~~~~~ 671 (880)
..|-..|.-=...|.+++|..+++++++.. +....|.++-. +. .+.+ ....|.++|+.....
T Consensus 508 llwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 508 LLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred HHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 677777777777899999999999987543 23335655433 11 1222 344677777664432
Q ss_pred --CCCCChhhHHHHHHHHHHHHhccchhh
Q 002795 672 --NAASSEITVSNLSRALHALCRSEKERD 698 (880)
Q Consensus 672 --~~~p~~~~~~~~~~~~~~~~~~g~~~e 698 (880)
...|..--+.-+-.+.+.-...|...+
T Consensus 586 ~k~~~~KeeR~~LLEaw~~~E~~~G~~~d 614 (677)
T KOG1915|consen 586 LKESTPKEERLMLLEAWKNMEETFGTEGD 614 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHhcCchhh
Confidence 111223333334444554455554433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-09 Score=123.60 Aligned_cols=483 Identities=11% Similarity=0.074 Sum_probs=334.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHH
Q 002795 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILG 239 (880)
Q Consensus 160 ~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~ 239 (880)
..++.+..+|++++|..++.+.++.. +.....|.+|...|-..|+.+++...+-.+-...+ .|...|..+.....
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p----~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP----KDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC----CChHHHHHHHHHHH
Confidence 33455666799999999999999887 67889999999999999999999988766654443 56688999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHH-
Q 002795 240 KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYN- 318 (880)
Q Consensus 240 ~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~- 318 (880)
+.|++..|.-.|.+..+. -+++...+---...|-+.|+...|...|.++.... ++.|..-+-
T Consensus 219 ~~~~i~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~---------------p~~d~er~~d 281 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD---------------PPVDIERIED 281 (895)
T ss_pred hcccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC---------------CchhHHHHHH
Confidence 999999999999999984 45555555556677899999999999999998863 222222222
Q ss_pred ---HHHHHHhcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---------------
Q 002795 319 ---AVLNACVPSHQWKGVFWVFKQLRKS-GLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSG--------------- 379 (880)
Q Consensus 319 ---~ll~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g--------------- 379 (880)
.++..+...++-+.|.+.+...... +-.-+..+++.++..+.+...++.|......+....
T Consensus 282 ~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~ 361 (895)
T KOG2076|consen 282 LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRR 361 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcc
Confidence 3455566777779999988887652 223355667888888888889998888877776621
Q ss_pred ------------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002795 380 ------------EAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRG--VVGTASVYYELACCLCNNGRWQDAMLVVEKI 445 (880)
Q Consensus 380 ------------~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m 445 (880)
+.++..++ -++-++......+....+.......+ +.-+...|.-+..+|...|++.+|+.+|..+
T Consensus 362 ~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i 440 (895)
T KOG2076|consen 362 EEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI 440 (895)
T ss_pred ccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 22233331 12233334444445555555556666 3334567888999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Q 002795 446 KSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTF 525 (880)
Q Consensus 446 ~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~ 525 (880)
.. ....-+...|-.+..+|...|..+.|.+.|+......+-+...--+|-..|-+.|+.++|.+.+..|..-+.
T Consensus 441 ~~-~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~----- 514 (895)
T KOG2076|consen 441 TN-REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDG----- 514 (895)
T ss_pred hc-CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc-----
Confidence 98 444455778999999999999999999999999987777788888888999999999999999998763210
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----------------------CCCHHHHHHHHHHHH
Q 002795 526 LSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGC----------------------QLDQTKHAWLLVEAS 583 (880)
Q Consensus 526 l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~----------------------~pd~~~~~~ll~~~~ 583 (880)
.........|+..........+...|+.++-..+-..|+.... .-.......++.+-.
T Consensus 515 ~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~ 594 (895)
T KOG2076|consen 515 RNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRARE 594 (895)
T ss_pred cchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHh
Confidence 0001222445555556666777788888887776666654211 111122223333333
Q ss_pred HcCCHHHHHHHHH------HHHHCCCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCc--cCH---HHHHHHHH
Q 002795 584 RAGKCHLLEHAFD------SLLEAGEIPHP--LFFTEMLIQAIVQSNYEKAVALINAMAYAPFH--ITE---RQWTELFE 650 (880)
Q Consensus 584 ~~G~~~~A~~~~~------~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~--p~~---~~~~~ll~ 650 (880)
+.++....+.... .-...|+.-+. ..+..++..+++.+.+++|+.+...+....+. ++. ..-...+.
T Consensus 595 k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~ 674 (895)
T KOG2076|consen 595 KATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLK 674 (895)
T ss_pred ccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHH
Confidence 3333222222211 11112322221 13345567788889999999999998754432 222 11234455
Q ss_pred HhhhccCHHHHHHHHHHHHhC
Q 002795 651 SNEDRISRDKLEKLLNALCNC 671 (880)
Q Consensus 651 a~~~~~~~~~a~~l~~~~~~~ 671 (880)
++...+++..+...+..|+..
T Consensus 675 ~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 675 ASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHhcCCHHHHHHHHHHHHHH
Confidence 667888999999998888876
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-11 Score=124.44 Aligned_cols=440 Identities=11% Similarity=0.055 Sum_probs=291.7
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC---
Q 002795 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSR-FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD--- 263 (880)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~-~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd--- 263 (880)
.+..++..|...|.......+|+..++.+++...- |+. ..--.+.+.+.+.+.+.+|+++|+..... .|+
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf---~nag~lkmnigni~~kkr~fskaikfyrmaldq---vpsink 272 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMF---PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ---VPSINK 272 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhccccc---CCCceeeeeecceeeehhhHHHHHHHHHHHHhh---ccccch
Confidence 45556666777777778888999999988765432 332 22234556778889999999999887763 232
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 002795 264 ---IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQL 340 (880)
Q Consensus 264 ---~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m 340 (880)
....+.+...+.+.|.++.|...|+...+ ..||..+--.|+-++..-|+.++..+.|.+|
T Consensus 273 ~~rikil~nigvtfiq~gqy~dainsfdh~m~-----------------~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kl 335 (840)
T KOG2003|consen 273 DMRIKILNNIGVTFIQAGQYDDAINSFDHCME-----------------EAPNFIAALNLIICAFAIGDAEKMKEAFQKL 335 (840)
T ss_pred hhHHHHHhhcCeeEEecccchhhHhhHHHHHH-----------------hCccHHhhhhhhhhheecCcHHHHHHHHHHH
Confidence 33456666678899999999999999887 5688777666677777789999999999999
Q ss_pred HHCCCCCC------------HHHHHHHH-----HHHHHcCC--hHHHHHHHHHHHHcCCCccHH-------------HHH
Q 002795 341 RKSGLKPS------------AATYGLAM-----EVMLQSGK--YDLVHEFFRKMAKSGEAIGAL-------------TYK 388 (880)
Q Consensus 341 ~~~g~~pd------------~~t~~~ll-----~a~~~~g~--~~~A~~l~~~m~~~g~~~d~~-------------~~~ 388 (880)
..-...|| ....+..| .-+-+..+ -+++.-.-.+++.--+.|+-. .+.
T Consensus 336 i~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~ 415 (840)
T KOG2003|consen 336 IDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHA 415 (840)
T ss_pred hcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhh
Confidence 76433333 22222222 11211111 111211111222111222210 000
Q ss_pred --------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-Hh-CCCHHHHHHHHHHHHhcCCCCCCHHHH
Q 002795 389 --------VLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCL-CN-NGRWQDAMLVVEKIKSLRHSKPLEITF 458 (880)
Q Consensus 389 --------~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~-~~-~g~~~~A~~l~~~m~~~~~~~p~~~t~ 458 (880)
.-..-|.++|+++.|+++++-....+-..-...-+.|...+ .+ ..++.+|..+-+.... ..+-+....
T Consensus 416 ~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln--~dryn~~a~ 493 (840)
T KOG2003|consen 416 ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN--IDRYNAAAL 493 (840)
T ss_pred hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc--ccccCHHHh
Confidence 11234779999999999999988776543333333332222 23 3467778777776654 222333333
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHH
Q 002795 459 TGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY 538 (880)
Q Consensus 459 ~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~ 538 (880)
+.--+.....|++++|...|.+.......-....-.+.-.+-..|+.++|++.|-++... +.-+..
T Consensus 494 ~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i--------------l~nn~e 559 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI--------------LLNNAE 559 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH--------------HHhhHH
Confidence 333334456899999999999988742222223333444567789999999999988763 345777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 002795 539 TYSSMLEASATAHQWEYFEYVYKGMALSGCQL-DQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP-HPLFFTEMLIQ 616 (880)
Q Consensus 539 t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~p-d~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~ 616 (880)
....+...|-...+..+|.+++-+.. .+.| |+.+...|...|-+.|+-..|.+.+-.-- ..-| +..+.. .+.+
T Consensus 560 vl~qianiye~led~aqaie~~~q~~--slip~dp~ilskl~dlydqegdksqafq~~ydsy--ryfp~nie~ie-wl~a 634 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQAN--SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY--RYFPCNIETIE-WLAA 634 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhc--ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc--cccCcchHHHH-HHHH
Confidence 88888899999999999999986654 3445 58889999999999999999888754322 2334 333443 4555
Q ss_pred HHHh-CCHHHHHHHHHHhhhCCCccCHHHHHHHHHHh-hhccCHHHHHHHHHHHHhCCC
Q 002795 617 AIVQ-SNYEKAVALINAMAYAPFHITERQWTELFESN-EDRISRDKLEKLLNALCNCNA 673 (880)
Q Consensus 617 ~~~~-g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~-~~~~~~~~a~~l~~~~~~~~~ 673 (880)
|+-. .-+++|+.+|++.. -+.|+..-|..++..| .+.|++.+|..+++.....=+
T Consensus 635 yyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 5544 55899999999875 5799999999998876 568999999999998776543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.3e-09 Score=110.24 Aligned_cols=441 Identities=10% Similarity=0.098 Sum_probs=328.4
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC-HHH
Q 002795 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-IAA 266 (880)
Q Consensus 188 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd-~~t 266 (880)
.+...|..-.+.=..++++..|+.+|+.++... ..+...|-..+.+=.++..+..|..++++.... -|- ...
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd----~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdql 143 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD----YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQL 143 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc----cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHH
Confidence 455566666666667788999999999997543 367789999999999999999999999998873 343 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC
Q 002795 267 YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346 (880)
Q Consensus 267 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~ 346 (880)
|---+..=-..|++..|.++|+.-.. -.|+...|++.|+.-.+...++.|..+|+...- +.
T Consensus 144 WyKY~ymEE~LgNi~gaRqiferW~~-----------------w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~H 204 (677)
T KOG1915|consen 144 WYKYIYMEEMLGNIAGARQIFERWME-----------------WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VH 204 (677)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHc-----------------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ec
Confidence 44445555667999999999999887 689999999999999999999999999999875 35
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHH
Q 002795 347 PSAATYGLAMEVMLQSGKYDLVHEFFRKMAKS-G-EAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA-SVYY 423 (880)
Q Consensus 347 pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~-g-~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~ 423 (880)
|++.+|--....=-+.|....+..+|...++. | -..+...+++...--.++..++.|.-+|+-.+++-+.... ..|.
T Consensus 205 P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k 284 (677)
T KOG1915|consen 205 PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYK 284 (677)
T ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 99999988888888999999999999988765 2 1122345555555556678899999999988876444322 3333
Q ss_pred HHHHHHHhCCC---HHHHHHH-----HHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCH--HHHH
Q 002795 424 ELACCLCNNGR---WQDAMLV-----VEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI--GTVN 493 (880)
Q Consensus 424 ~Li~~~~~~g~---~~~A~~l-----~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~--~~~~ 493 (880)
....-=-+-|+ +++++.- ++.+.. ....|-.+|--.+..-...|+.+..+++|+....+++|-. ..|.
T Consensus 285 ~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~--~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~ 362 (677)
T KOG1915|consen 285 KYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS--KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWR 362 (677)
T ss_pred HHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH--hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHH
Confidence 33332234454 3444332 223333 2334556777777777888999999999999999888842 2233
Q ss_pred HHHHH--------HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 002795 494 AMLKV--------YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT----AHQWEYFEYVYK 561 (880)
Q Consensus 494 ~Li~~--------~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~----~~~~~~A~~l~~ 561 (880)
-.|.. =....+.+.+.++|+..++. +.-...||.-+--.|++ +.++..|.+++.
T Consensus 363 RYIYLWinYalyeEle~ed~ertr~vyq~~l~l--------------IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG 428 (677)
T KOG1915|consen 363 RYIYLWINYALYEELEAEDVERTRQVYQACLDL--------------IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILG 428 (677)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------cCcccchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 22222 12467899999999999984 33356777776666654 488999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCC-cc
Q 002795 562 GMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPF-HI 640 (880)
Q Consensus 562 ~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~-~p 640 (880)
..+ |.-|...+|...|..=.+.+.++....++++.++-+ +-+..+|......=-..|+.+.|..+|+-....+. ..
T Consensus 429 ~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm 505 (677)
T KOG1915|consen 429 NAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDM 505 (677)
T ss_pred HHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc
Confidence 877 789999999999999899999999999999999865 22455666554444455999999999998875543 33
Q ss_pred CHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCC
Q 002795 641 TERQWTELFESNEDRISRDKLEKLLNALCNCNA 673 (880)
Q Consensus 641 ~~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~ 673 (880)
....|-+.+.--...+..+.+..+++.+++...
T Consensus 506 pellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 506 PELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 445666666666678899999999999998764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-08 Score=107.96 Aligned_cols=464 Identities=10% Similarity=0.041 Sum_probs=303.9
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CcCCCCCCCHHHHHHHHHHHHHc
Q 002795 163 DRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYG-LKDKRDLKSRFVYTKLLAILGKA 241 (880)
Q Consensus 163 ~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~-~~~~~~~~d~~~~~~Ll~~~~~~ 241 (880)
-+|.+-.-|+.|..++....+ .++-+...|.+....=-..|+.+....+.++-+. ....+...+...|-.=...|-..
T Consensus 414 lAlarLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 344455566777777776654 3466667776666666677777776666654322 22234445666677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHH
Q 002795 242 GRPHEALRIFNLMLEDCNLYP--DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNA 319 (880)
Q Consensus 242 g~~~~A~~lf~~m~~~~g~~p--d~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ 319 (880)
|.+--+..+......- |+.- --.||+.-...|.+.+.++-|..+|....+. .+.+...|..
T Consensus 493 gsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv----------------fp~k~slWlr 555 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV----------------FPCKKSLWLR 555 (913)
T ss_pred CChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh----------------ccchhHHHHH
Confidence 7777777776666653 3322 2456777777777777777777777777765 5566667777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 002795 320 VLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGK 399 (880)
Q Consensus 320 ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~ 399 (880)
....--..|..++-..+|++....- +-....|-....-+...|++..|+.++....+.. +.+...|-+-+..-..+..
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e 633 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDE 633 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhcccc
Confidence 6666666777777777777776652 2234445555555667777777777777777764 3356777777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHH
Q 002795 400 INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-ITFTGLIISSMDGGHIDDCISIF 478 (880)
Q Consensus 400 ~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~-~t~~~ll~a~~~~g~~~~A~~i~ 478 (880)
++.|..+|.+.... .|+...|.--+...--.+..++|++++++..+ ..|+- ..|..+-+.+-+.++++.|+..|
T Consensus 634 ~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk---~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 634 LERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALK---SFPDFHKLWLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred HHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH---hCCchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 78888777776553 34555555555555566777777777777765 44544 34556666777777788888777
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 002795 479 QHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFE 557 (880)
Q Consensus 479 ~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~ 557 (880)
..-.+.++..+-.|-.|...=-+.|.+-.|..+|++..-.+ | |...|-..|+.=.+.|+.+.|.
T Consensus 709 ~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN---------------Pk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 709 LQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN---------------PKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC---------------CCcchhHHHHHHHHHHcCCHHHHH
Confidence 77777777777777777777777777778888887777654 4 6667777777777788888887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCC
Q 002795 558 YVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAP 637 (880)
Q Consensus 558 ~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~ 637 (880)
.++.+..+. ++.+...|..-|.+..+.++-..+.+.+.+ ... |+...-.+...+....++++|.+.|.+...
T Consensus 774 ~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk---ce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk-- 845 (913)
T KOG0495|consen 774 LLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK---CEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVK-- 845 (913)
T ss_pred HHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh---ccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 777776653 444556666666666666664444444333 222 222333355555566778888888877763
Q ss_pred CccC-HHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 002795 638 FHIT-ERQWTELFESNEDRISRDKLEKLLNALCNCNAA 674 (880)
Q Consensus 638 ~~p~-~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~ 674 (880)
+-|| -.+|.-++.-+..+|.-+.-..++..+..+.+.
T Consensus 846 ~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 846 KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 2333 346777777777777777777777777766643
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-08 Score=109.18 Aligned_cols=358 Identities=9% Similarity=0.049 Sum_probs=155.5
Q ss_pred hCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHcCCCCCCHHHHHHHHHHHHhc
Q 002795 202 DKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLM----LEDCNLYPDIAAYHSVAVTLGQV 277 (880)
Q Consensus 202 ~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m----~~~~g~~pd~~t~~~ll~~~~~~ 277 (880)
+..-++.|..++..+.+.-+ .+..+|.+-...=-.+|+.+...+++++- ... |+..+...|-.=...|-..
T Consensus 418 rLetYenAkkvLNkaRe~ip----td~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~n-gv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREIIP----TDREIWITAAKLEEANGNVDMVEKIIDRGLSELQAN-GVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HHHHHHHHHHHHHHHHhhCC----CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc-ceeecHHHHHHHHHHHhhc
Confidence 33344445555444433222 34444444444444445554444444332 222 4444444444444444444
Q ss_pred CCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002795 278 GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAME 357 (880)
Q Consensus 278 g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 357 (880)
|..-.+..+.......|.. ..---.||+.--..|.+.+.++-|..+|...++.- .-+...|..+..
T Consensus 493 gsv~TcQAIi~avigigvE-------------eed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~ 558 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVE-------------EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAM 558 (913)
T ss_pred CChhhHHHHHHHHHhhccc-------------cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHH
Confidence 5444444444444444310 11223344444444555555555555554444321 112333333333
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 002795 358 VMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQD 437 (880)
Q Consensus 358 a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~ 437 (880)
.=-..|..+.-..+|++.+.. ++-....|-....-+...|++..|..++....+.+.. +...|-.-+.....+..++.
T Consensus 559 ~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~er 636 (913)
T KOG0495|consen 559 FEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELER 636 (913)
T ss_pred HHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHH
Confidence 333444444555555544443 1223334444444444445555555555544444332 33334444444445555555
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 438 AMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 438 A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 517 (880)
|..+|.+... ..|+...|.--+...--.++.++|.+++++..+..+.=...|-.+.+.+-+.++.+.|.+.|..-.+
T Consensus 637 aR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 637 ARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred HHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 5555544433 3334434333333333344455555555444443333344444444445555555555554444333
Q ss_pred cCCCCccccCCCCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002795 518 ANSSGYTFLSGDGAPLKPDE-YTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFD 596 (880)
Q Consensus 518 ~g~~~~~~l~~~~~~~~Pd~-~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~ 596 (880)
. -|+. -.|..+...=-+.|++-.|..++.+....+ +-+...|...|.+=.+.|+.+.|..+..
T Consensus 714 ~---------------cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 714 K---------------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred c---------------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 2322 233333333333344555555554444322 1234444444555455555555554444
Q ss_pred HHH
Q 002795 597 SLL 599 (880)
Q Consensus 597 ~m~ 599 (880)
+..
T Consensus 778 kAL 780 (913)
T KOG0495|consen 778 KAL 780 (913)
T ss_pred HHH
Confidence 433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-08 Score=103.73 Aligned_cols=254 Identities=13% Similarity=0.095 Sum_probs=132.3
Q ss_pred HHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCCH
Q 002795 323 ACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGE--AIGALTYKVLVRAFWEEGKI 400 (880)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~--~~d~~~~~~Li~~~~~~g~~ 400 (880)
++-...+.++++.-.......|+.-+...-+-...+.....++++|+.+|+++.+... --|..+|+.++-.--.+.++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 3444445555555555555555543333333333333455566666666666666531 12445555544332221111
Q ss_pred H-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHH
Q 002795 401 N-EAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-ITFTGLIISSMDGGHIDDCISIF 478 (880)
Q Consensus 401 ~-~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~-~t~~~ll~a~~~~g~~~~A~~i~ 478 (880)
. -|..++. -....| .|...+..-|+-.++.+.|...|++..+ ..|.. ..|+.+.+-|....+...|+.-+
T Consensus 316 s~LA~~v~~---idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 316 SYLAQNVSN---IDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHH---hccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 1 1111111 011122 2333344445555566666666666655 33333 34555555566666666666666
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 002795 479 QHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFE 557 (880)
Q Consensus 479 ~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~ 557 (880)
+...+-++.|-..|-.|.++|.-.+...-|+-.|++... ++| |...|.+|..+|.+.++.++|.
T Consensus 388 RrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---------------~kPnDsRlw~aLG~CY~kl~~~~eAi 452 (559)
T KOG1155|consen 388 RRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---------------LKPNDSRLWVALGECYEKLNRLEEAI 452 (559)
T ss_pred HHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---------------cCCCchHHHHHHHHHHHHhccHHHHH
Confidence 666665556666666666666666666666666666655 345 5556666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002795 558 YVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLE 600 (880)
Q Consensus 558 ~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~ 600 (880)
..|......| ..+...+..|...|-+.++.++|...|.+..+
T Consensus 453 KCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 453 KCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6666665544 22445556666666666666666666654443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4e-09 Score=118.60 Aligned_cols=283 Identities=14% Similarity=0.095 Sum_probs=218.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHH--HHHHHHHhcCCHHHHH
Q 002795 327 SHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYK--VLVRAFWEEGKINEAV 404 (880)
Q Consensus 327 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~--~Li~~~~~~g~~~~A~ 404 (880)
.|+++.|.+.+....+..-.| ...|.....+..+.|+++.|...+.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 699999998887765542122 223444455558999999999999999885 35543332 3467889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCH------HHHHHHHHHHHhCCCHHHHHHHH
Q 002795 405 AAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE------ITFTGLIISSMDGGHIDDCISIF 478 (880)
Q Consensus 405 ~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~------~t~~~ll~a~~~~g~~~~A~~i~ 478 (880)
..++++.+.++. +...+..+...|.+.|++++|..++..+.+.....+.. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999988754 56668889999999999999999999999833332322 23444555555566677788888
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002795 479 QHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEY 558 (880)
Q Consensus 479 ~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~ 558 (880)
+.+.+..+.++.....+...+...|+.++|..++++..+. .||.... ++.+....++.+++.+
T Consensus 253 ~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---------------~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 253 KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---------------QYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------CCCHHHH--HHHhhccCCChHHHHH
Confidence 8887766778999999999999999999999999999884 3665322 3334445589999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 002795 559 VYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 634 (880)
Q Consensus 559 l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 634 (880)
..+...+. .|+ ...+.++-..|.+.|++++|.+.|+...+. .|+...+..+...+.+.|+.++|..++++-.
T Consensus 316 ~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 316 VLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99988864 444 666778888899999999999999999885 4999888888888888999999999998764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.8e-09 Score=117.93 Aligned_cols=281 Identities=11% Similarity=0.085 Sum_probs=130.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHH-
Q 002795 241 AGRPHEALRIFNLMLEDCNLYPDIAA-YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYN- 318 (880)
Q Consensus 241 ~g~~~~A~~lf~~m~~~~g~~pd~~t-~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~- 318 (880)
.|+++.|.+.+....+. .+++.. |........+.|+++.|...|.++.+ ..|+...+-
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~-----------------~~~~~~~~~~ 156 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAE-----------------LADNDQLPVE 156 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----------------cCCcchHHHH
Confidence 46666666555554442 111222 22223333555666666666666654 233332222
Q ss_pred -HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccH-------HHHHHH
Q 002795 319 -AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGA-------LTYKVL 390 (880)
Q Consensus 319 -~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~-------~~~~~L 390 (880)
.....+...|+++.|...++++.+.. +-+...+..+...|.+.|+++.|..++..+.+.+..++. .+|..+
T Consensus 157 l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 157 ITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 22334555666666666666665543 113445555556666666666666666666655432111 122222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Q 002795 391 VRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH 470 (880)
Q Consensus 391 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~ 470 (880)
+.......+.+...++++.+.+.- ..+......+...+...|+.++|..++.+..+ ..|+.. ..++.+....++
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~--l~~l~~~l~~~~ 309 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDER--LVLLIPRLKTNN 309 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHH--HHHHHhhccCCC
Confidence 222223333344444444433221 22334444455555555555555555555443 122221 111222223355
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 002795 471 IDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA 550 (880)
Q Consensus 471 ~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~ 550 (880)
.+++....+...+..+-|...+.++...|.+.+++++|.+.|+...+ ..|+..+|..+...+...
T Consensus 310 ~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~---------------~~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 310 PEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK---------------QRPDAYDYAWLADALDRL 374 (398)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---------------cCCCHHHHHHHHHHHHHc
Confidence 55555555555444444444555555555555555555555555554 235555555555555555
Q ss_pred CCHHHHHHHHHHH
Q 002795 551 HQWEYFEYVYKGM 563 (880)
Q Consensus 551 ~~~~~A~~l~~~m 563 (880)
|+.++|.+++++-
T Consensus 375 g~~~~A~~~~~~~ 387 (398)
T PRK10747 375 HKPEEAAAMRRDG 387 (398)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.9e-08 Score=103.72 Aligned_cols=381 Identities=11% Similarity=0.017 Sum_probs=263.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHH
Q 002795 187 MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA 266 (880)
Q Consensus 187 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t 266 (880)
.-|...+-.....+.+.|....|...|-.++...| +.|.+-+....-.-+.+.+..+...+..+ +...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P-------~~W~AWleL~~lit~~e~~~~l~~~l~~~-----~h~M 228 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP-------WFWSAWLELSELITDIEILSILVVGLPSD-----MHWM 228 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC-------cchHHHHHHHHhhchHHHHHHHHhcCccc-----chHH
Confidence 45555555555566677888888888887765332 23444333322233333333332222210 1111
Q ss_pred H-HHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC
Q 002795 267 Y-HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL 345 (880)
Q Consensus 267 ~-~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~ 345 (880)
- -.+..++......++++.-.......| .+-+...-+-...+.-...++++|+.+|+++.+...
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~g---------------f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDP 293 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVG---------------FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDP 293 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 1 123445666667788888777777765 444443333333445677899999999999998732
Q ss_pred C--CCHHHHHHHHHHHHHcCChH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002795 346 K--PSAATYGLAMEVMLQSGKYD-LVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY 422 (880)
Q Consensus 346 ~--pd~~t~~~ll~a~~~~g~~~-~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 422 (880)
- -|..+|+.++-+--...++. .|..++ .+-+ --+.|+..+.+-|+-.++.++|+.+|+..++.+.. ....|
T Consensus 294 YRl~dmdlySN~LYv~~~~skLs~LA~~v~-~idK----yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aW 367 (559)
T KOG1155|consen 294 YRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NIDK----YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAW 367 (559)
T ss_pred CcchhHHHHhHHHHHHhhhHHHHHHHHHHH-Hhcc----CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHH
Confidence 1 27889998885544433332 222222 1222 23568888999999999999999999999998865 45569
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhc
Q 002795 423 YELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRN 502 (880)
Q Consensus 423 ~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~ 502 (880)
+.|..-|....+...|+.-++...+ -.+.|-..|-.|.++|.-.+...-|.-+|++...--|.|...|.+|..+|.+.
T Consensus 368 TLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 368 TLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL 445 (559)
T ss_pred HHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 9999999999999999999999987 23345678999999999999999999999999887778999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHH--HH
Q 002795 503 DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALS----GCQLDQTK--HA 576 (880)
Q Consensus 503 g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~----g~~pd~~~--~~ 576 (880)
++.++|++.|......| ..+...+..+.+.|-+.++.++|.+.|.+-++. |..-+... ..
T Consensus 446 ~~~~eAiKCykrai~~~--------------dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~ 511 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAILLG--------------DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARL 511 (559)
T ss_pred ccHHHHHHHHHHHHhcc--------------ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 99999999999999875 346688999999999999999999999887653 33322222 22
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 002795 577 WLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 634 (880)
Q Consensus 577 ~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 634 (880)
.|-.-+.+.+++++|...-...... .-..++|..+++++.
T Consensus 512 fLA~~f~k~~~~~~As~Ya~~~~~~------------------~~e~eeak~LlReir 551 (559)
T KOG1155|consen 512 FLAEYFKKMKDFDEASYYATLVLKG------------------ETECEEAKALLREIR 551 (559)
T ss_pred HHHHHHHhhcchHHHHHHHHHHhcC------------------CchHHHHHHHHHHHH
Confidence 2333356778877776544332221 123677888887765
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-09 Score=120.94 Aligned_cols=132 Identities=9% Similarity=-0.113 Sum_probs=93.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHH
Q 002795 540 YSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA--GEIPHPLFFTEMLIQA 617 (880)
Q Consensus 540 ~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~ 617 (880)
-+.++..|.+..+..+++..-+.....-+ ...|..||.-+.+..+.+.|....++.... .+.-|..-+..+...+
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 45556666666666666544333322111 266889999999999999999998887653 3445666778888888
Q ss_pred HHhCCHHHHHHHHHHhhhCC-CccC-HHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 002795 618 IVQSNYEKAVALINAMAYAP-FHIT-ERQWTELFESNEDRISRDKLEKLLNALCNCNAA 674 (880)
Q Consensus 618 ~~~g~~~~A~~l~~~m~~~~-~~p~-~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~ 674 (880)
.+.+....+..++.+|...- ..|+ ..++-.++......|+.+...++++.+...|+.
T Consensus 539 ~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~ 597 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLS 597 (1088)
T ss_pred HHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhh
Confidence 88899999999999987421 2232 334556777778889999999999888877765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.6e-09 Score=118.75 Aligned_cols=293 Identities=11% Similarity=0.014 Sum_probs=204.3
Q ss_pred hCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHhcCC
Q 002795 202 DKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI--AAYHSVAVTLGQVGL 279 (880)
Q Consensus 202 ~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~--~t~~~ll~~~~~~g~ 279 (880)
..|+++.|.+.+....+..+ .....+-....++...|+++.|...|.+..+. .|+. ...-.....+...|+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~----~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAA----EPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNE 168 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCC
Confidence 56888888888887755432 12344555566777889999999999888764 3443 233334677788899
Q ss_pred HHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002795 280 LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVM 359 (880)
Q Consensus 280 ~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 359 (880)
++.|...++.+.+. .+.+...+..+...|...|++++|..++..+.+.++.+.......-..++
T Consensus 169 ~~~Al~~l~~l~~~----------------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~ 232 (409)
T TIGR00540 169 LHAARHGVDKLLEM----------------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE 232 (409)
T ss_pred HHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999998886 34566778888888999999999999999998887543322211111211
Q ss_pred ---HHcCChHHHHHHHHHHHHcCC---CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhC
Q 002795 360 ---LQSGKYDLVHEFFRKMAKSGE---AIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY-YELACCLCNN 432 (880)
Q Consensus 360 ---~~~g~~~~A~~l~~~m~~~g~---~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~Li~~~~~~ 432 (880)
...+..+.+...+..+.+... +.+...+..+...+...|+.++|.+++++..+.........+ ..........
T Consensus 233 ~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 233 IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCC
Confidence 222233333344444444321 137888889999999999999999999999987654332211 1122223456
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002795 433 GRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKEL 511 (880)
Q Consensus 433 g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~-~~~pd~~~~~~Li~~~~~~g~~~~A~~l 511 (880)
++.+.+...++...+.....|+.....++-..|.+.|++++|.+.|+.... ...|+...+..+...+.+.|+.++|.++
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 788888999888877333333224456788889999999999999996444 3468888899999999999999999999
Q ss_pred HHHHHH
Q 002795 512 FEETTR 517 (880)
Q Consensus 512 f~~m~~ 517 (880)
+++...
T Consensus 393 ~~~~l~ 398 (409)
T TIGR00540 393 RQDSLG 398 (409)
T ss_pred HHHHHH
Confidence 998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=7e-09 Score=117.26 Aligned_cols=289 Identities=12% Similarity=0.052 Sum_probs=197.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHH
Q 002795 239 GKAGRPHEALRIFNLMLEDCNLYPDI-AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY 317 (880)
Q Consensus 239 ~~~g~~~~A~~lf~~m~~~~g~~pd~-~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty 317 (880)
...|+++.|.+.+....+. .|+. ..+-....++.+.|+.+.|...+.+..+.. ..++....
T Consensus 95 ~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~---------------p~~~l~~~ 156 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA---------------GNDNILVE 156 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------CcCchHHH
Confidence 4579999999999887763 4553 344455667788899999999999987642 22223334
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHH---
Q 002795 318 NAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAF--- 394 (880)
Q Consensus 318 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~--- 394 (880)
-.....+...|+++.|...++.+.+.. +-+...+..+...+...|+++.|.+++..+.+.+..+.......-..++
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 445677888999999999999998875 2256678888899999999999999999999887433222211111222
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHH---HHHHHHHHHhC
Q 002795 395 WEEGKINEAVAAVRNMEQRGVV---GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT---FTGLIISSMDG 468 (880)
Q Consensus 395 ~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t---~~~ll~a~~~~ 468 (880)
...+..+.+.+.+..+...... .+...+..+...+...|+.++|..++++..+ ..|+... ...........
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~---~~pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK---KLGDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh---hCCCcccchhHHHHHhhhcCC
Confidence 2233333334455555544321 2667777788888899999999999888877 3344432 11111222345
Q ss_pred CCHHHHHHHHHHHhhCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHH--HHHcCCCCccccCCCCCCCCCCHHHHHHHH
Q 002795 469 GHIDDCISIFQHMKDHCEPNI--GTVNAMLKVYSRNDMFSKAKELFEE--TTRANSSGYTFLSGDGAPLKPDEYTYSSML 544 (880)
Q Consensus 469 g~~~~A~~i~~~m~~~~~pd~--~~~~~Li~~~~~~g~~~~A~~lf~~--m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll 544 (880)
++.+.+...++...+..+-|. ....++...|.+.|++++|.+.|+. ..+ ..||...+..+.
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~---------------~~p~~~~~~~La 377 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK---------------EQLDANDLAMAA 377 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh---------------cCCCHHHHHHHH
Confidence 677777777777766555555 6677888888888888888888884 444 458888788888
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 002795 545 EASATAHQWEYFEYVYKGMA 564 (880)
Q Consensus 545 ~a~~~~~~~~~A~~l~~~m~ 564 (880)
..+.+.|+.++|.+++++..
T Consensus 378 ~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 88888888888888887643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=132.21 Aligned_cols=261 Identities=15% Similarity=0.149 Sum_probs=98.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHH
Q 002795 160 VLVDRLSEREMTAKNWKFVRIMNQSGL-MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAIL 238 (880)
Q Consensus 160 ~li~~l~~~~~~~~A~~l~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~ 238 (880)
.+...+.+.|++++|+++++....... +.+..-|..+...+...++++.|...++.++..+. .+...+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~----~~~~~~~~l~~l- 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK----ANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccccc-
Confidence 557777788888888888855443331 33444444455566667888888888888876543 244566677766
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHH
Q 002795 239 GKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYN 318 (880)
Q Consensus 239 ~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~ 318 (880)
...+++++|.+++....++ .++...+..++..+.+.++++++..+++.+..... .+.+...|.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~~~ 150 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA--------------APDSARFWL 150 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T-----------------T-HHHHH
T ss_pred ccccccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC--------------CCCCHHHHH
Confidence 6778888888888776554 35666677777778888888888888888765421 356777777
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 002795 319 AVLNACVPSHQWKGVFWVFKQLRKSGLKP-SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEE 397 (880)
Q Consensus 319 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~ 397 (880)
.+...+.+.|+.++|+.+|++..+. .| |....+.++..+...|+.+++..++....+.. +.|...+..+..+|...
T Consensus 151 ~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 151 ALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQL 227 (280)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccc
Confidence 7778888888888888888888765 34 46667777777888888888888877777664 45566777888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002795 398 GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIK 446 (880)
Q Consensus 398 g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~ 446 (880)
|+.++|..+|++....+.. |..+...+..++...|+.++|..+.++..
T Consensus 228 g~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 8888888888887775532 56666677788888888888887776654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=131.61 Aligned_cols=262 Identities=13% Similarity=0.132 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCC
Q 002795 233 KLLAILGKAGRPHEALRIFNLMLEDCNLYPDI-AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE 311 (880)
Q Consensus 233 ~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~-~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~ 311 (880)
.+...+.+.|++++|+++++..... ..+|+. ..|..+...+...++++.|...++++...+ +
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~----------------~ 75 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD----------------K 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc----------------c
Confidence 4466667777888888877554432 113433 334444445556677788888887777653 2
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCccHHHHHHH
Q 002795 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSG-EAIGALTYKVL 390 (880)
Q Consensus 312 pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g-~~~d~~~~~~L 390 (880)
-+...+..++.. ...+++++|..++....+. .++...+..++..+.+.++++.+..+++.+.... .+.+...|..+
T Consensus 76 ~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 152 (280)
T PF13429_consen 76 ANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLAL 152 (280)
T ss_dssp ---------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHH
T ss_pred cccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 244556666665 5777788888777766543 2455566677777778888888888887766543 34567777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Q 002795 391 VRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH 470 (880)
Q Consensus 391 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~ 470 (880)
...+.+.|+.++|++.|++..+..+. +....+.++..+...|+.+++..++....... ..+...+..+..+|...|+
T Consensus 153 a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~ 229 (280)
T PF13429_consen 153 AEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGR 229 (280)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccc
Confidence 78888888888888888888776543 45566777777888888888777777776622 2333455677777778888
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 471 IDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 471 ~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 517 (880)
.++|..+|+......+.|..+...+.+++.+.|+.++|..+..+...
T Consensus 230 ~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 230 YEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88888888887776666788888888888888888888888776544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.1e-10 Score=123.38 Aligned_cols=281 Identities=14% Similarity=0.095 Sum_probs=207.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHH-HHH
Q 002795 170 MTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPH-EAL 248 (880)
Q Consensus 170 ~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~-~A~ 248 (880)
...+|+.+|..+.. .+.-+......+..+|-..+++++|.++|+.+.+..+.. ..+..+|.+.+..+-+.-... -|.
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r-v~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR-VKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhHHHHHHHHHHhhHHHHHHHH
Confidence 45678888888443 335566778888889999999999999999887766543 357778888876554322111 122
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCC
Q 002795 249 RIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSH 328 (880)
Q Consensus 249 ~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g 328 (880)
.+.+.++ -.+.||.++..+|.-+++.+.|++.|++..+. .+....+|+.+..-++...
T Consensus 412 ~Li~~~~------~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----------------dp~faYayTLlGhE~~~~e 469 (638)
T KOG1126|consen 412 DLIDTDP------NSPESWCALGNCFSLQKDHDTAIKCFKRAIQL----------------DPRFAYAYTLLGHESIATE 469 (638)
T ss_pred HHHhhCC------CCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc----------------CCccchhhhhcCChhhhhH
Confidence 3333322 35778889999998889999999999888874 3347788888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 002795 329 QWKGVFWVFKQLRKSGLKPSAATYG---LAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVA 405 (880)
Q Consensus 329 ~~~~A~~l~~~m~~~g~~pd~~t~~---~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~ 405 (880)
.++.|...|+..+. .|...|+ .+.-.|.+.++++.|+-.|+...+.+ +.+.+....+...+-+.|+.++|+.
T Consensus 470 e~d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~ 544 (638)
T KOG1126|consen 470 EFDKAMKSFRKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQ 544 (638)
T ss_pred HHHhHHHHHHhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHH
Confidence 88889888888764 3444444 46667888888999998888888876 5567777778888888889999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 002795 406 AVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-ITFTGLIISSMDGGHIDDCISIFQHMKD 483 (880)
Q Consensus 406 ~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~-~t~~~ll~a~~~~g~~~~A~~i~~~m~~ 483 (880)
+|++....+......-| ..+..+...+++++|+..+++++. +.|+. ..|..+...|-+.|+.+.|..-|..+.+
T Consensus 545 ~~~~A~~ld~kn~l~~~-~~~~il~~~~~~~eal~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 545 LYEKAIHLDPKNPLCKY-HRASILFSLGRYVEALQELEELKE---LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHhcCCCCchhHH-HHHHHHHhhcchHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 99888877765333333 356667788888888888888887 55665 4566777888888888888888888776
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-09 Score=123.58 Aligned_cols=270 Identities=16% Similarity=0.198 Sum_probs=149.0
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCC
Q 002795 250 IFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQ 329 (880)
Q Consensus 250 lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~ 329 (880)
++-.+... |+.|+.+||..+|.-||..|+++.|- +|.-|.... .+.+...|+.++.+....++
T Consensus 12 fla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks---------------Lpv~e~vf~~lv~sh~~And 74 (1088)
T KOG4318|consen 12 FLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS---------------LPVREGVFRGLVASHKEAND 74 (1088)
T ss_pred HHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc---------------ccccchhHHHHHhccccccc
Confidence 44455555 88888888888888888888888887 888887765 67778888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002795 330 WKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRN 409 (880)
Q Consensus 330 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~ 409 (880)
.+.+. .|...||..|+.+|...||+.. |+...+ -.-.++..+...|.......++..
T Consensus 75 ~Enpk-----------ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k 131 (1088)
T KOG4318|consen 75 AENPK-----------EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMK 131 (1088)
T ss_pred ccCCC-----------CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhh
Confidence 77765 6778888888888888888655 222111 011122223333333333333332
Q ss_pred HH-HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC-CCC
Q 002795 410 ME-QRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEP 487 (880)
Q Consensus 410 m~-~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~-~~p 487 (880)
+. ..+..||..+ .+......|.++.+++++..+.......|..+ +++-+... .....++....+.. -.|
T Consensus 132 ~~c~p~~lpda~n---~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~ 202 (1088)
T KOG4318|consen 132 IHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAP 202 (1088)
T ss_pred cccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCC
Confidence 21 2233343332 23334444555555555544433222222222 12222221 11222222222221 136
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002795 488 NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSG 567 (880)
Q Consensus 488 d~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g 567 (880)
+..+|.+++.+-..+|+.+.|..++.+|.+.| +..+..-|..+|-+ .++...+..+++-|...|
T Consensus 203 ~s~~l~a~l~~alaag~~d~Ak~ll~emke~g-------------fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~g 266 (1088)
T KOG4318|consen 203 TSETLHAVLKRALAAGDVDGAKNLLYEMKEKG-------------FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKG 266 (1088)
T ss_pred ChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC-------------CCcccccchhhhhc---CccchHHHHHHHHHHHhc
Confidence 66666666666666666666666666666665 33344444444433 555555666666666666
Q ss_pred CCCCHHHHHHHHHHHHH
Q 002795 568 CQLDQTKHAWLLVEASR 584 (880)
Q Consensus 568 ~~pd~~~~~~ll~~~~~ 584 (880)
+.|+..|+.-.+..+..
T Consensus 267 v~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 267 VQPGSETQADYVIPQLS 283 (1088)
T ss_pred CCCCcchhHHHHHhhhc
Confidence 66666665555444444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-06 Score=94.87 Aligned_cols=488 Identities=10% Similarity=0.098 Sum_probs=305.4
Q ss_pred hhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 002795 134 LGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVL 213 (880)
Q Consensus 134 ~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~ 213 (880)
.-+..|+..++.- ........|...+..+...+..+-++.+|+.-.+. ++..-+--|..++..+++++|.+.+
T Consensus 120 ~tR~tfdrALraL---pvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~l 192 (835)
T KOG2047|consen 120 RTRRTFDRALRAL---PVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRL 192 (835)
T ss_pred HHHHHHHHHHHhC---chHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHH
Confidence 3455666655522 22223346677777888888888899999887753 4555778889999999999999999
Q ss_pred HHHHhCcCC---CCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 002795 214 DWVYGLKDK---RDLKSRFVYTKLLAILGKAGRPH---EALRIFNLMLEDCNLYPDI--AAYHSVAVTLGQVGLLKELVK 285 (880)
Q Consensus 214 ~~~~~~~~~---~~~~d~~~~~~Ll~~~~~~g~~~---~A~~lf~~m~~~~g~~pd~--~t~~~ll~~~~~~g~~~~A~~ 285 (880)
..+++...- ....+...|+-+-...+++-+.- ....+++.+..+ -+|. ..|++|...|.+.|.+++|..
T Consensus 193 a~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 193 ATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 988764221 12245567888777777664433 233455555543 4564 568999999999999999999
Q ss_pred HHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhc----------------CC------CHHHHHHHHHHHHHC
Q 002795 286 LIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP----------------SH------QWKGVFWVFKQLRKS 343 (880)
Q Consensus 286 l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~----------------~g------~~~~A~~l~~~m~~~ 343 (880)
+|++..+.- ..+.-|+.+.++|++ .+ +++-.+.-|+.+...
T Consensus 270 vyeeai~~v-----------------~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 270 VYEEAIQTV-----------------MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHHhh-----------------eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 999987642 122223333333332 11 122233344444332
Q ss_pred CC-----------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------cHHHHHHHHHHHHhcCCHHHHHHH
Q 002795 344 GL-----------KPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAI------GALTYKVLVRAFWEEGKINEAVAA 406 (880)
Q Consensus 344 g~-----------~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~------d~~~~~~Li~~~~~~g~~~~A~~~ 406 (880)
+. .-++.+|..-+. ...|+..+....|.+.++. +.| -...|..+...|...|+++.|..+
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 10 112222322222 2346667777788777765 222 245788899999999999999999
Q ss_pred HHHHHHCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC-----------------CHHHHHHHHHHHH
Q 002795 407 VRNMEQRGVVGT---ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP-----------------LEITFTGLIISSM 466 (880)
Q Consensus 407 ~~~m~~~g~~p~---~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p-----------------~~~t~~~ll~a~~ 466 (880)
|++...-..+-- ..+|-.-...=.+..+++.|+.+.+..... ...| +...|...++.--
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 999876544321 234444445555778889999988776541 1111 1123444455555
Q ss_pred hCCCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHH-HHHHH
Q 002795 467 DGGHIDDCISIFQHMKDH--CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSM 543 (880)
Q Consensus 467 ~~g~~~~A~~i~~~m~~~--~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~-t~~~l 543 (880)
..|-++....+|+.+.+- ..|-++. ...-.+-.+.-++++.++|++-+..= -.|++. .|+..
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~--NyAmfLEeh~yfeesFk~YErgI~LF-------------k~p~v~diW~tY 553 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIII--NYAMFLEEHKYFEESFKAYERGISLF-------------KWPNVYDIWNTY 553 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHhhHHHHHHHHHHHcCCccC-------------CCccHHHHHHHH
Confidence 678899999999999883 3443322 12222445667888998888755531 124543 67776
Q ss_pred HHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 002795 544 LEASATA---HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEA--SRAGKCHLLEHAFDSLLEAGEIPH--PLFFTEMLIQ 616 (880)
Q Consensus 544 l~a~~~~---~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~--~~~G~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~ 616 (880)
+.-+.+. ..++.|..+|++.++ |++|...-+--|+.+- -+.|....|+.++++.... +.+. ...||..|.-
T Consensus 554 Ltkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~k 631 (835)
T KOG2047|consen 554 LTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKK 631 (835)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHH
Confidence 6665554 568999999999998 7777654444443331 2568888999999986553 3332 3477777776
Q ss_pred HHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHH---HhhhccCHHHHHHHHHHHHhC
Q 002795 617 AIVQSNYEKAVALINAMAYAPFHITERQWTELFE---SNEDRISRDKLEKLLNALCNC 671 (880)
Q Consensus 617 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~---a~~~~~~~~~a~~l~~~~~~~ 671 (880)
....=.......++++..+. -|+...-...|+ --.+.|.+++|..++....+.
T Consensus 632 aae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 632 AAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 66654455555666666643 566555444444 234678889999998876654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6e-06 Score=91.29 Aligned_cols=507 Identities=10% Similarity=0.065 Sum_probs=290.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHH
Q 002795 158 IRVLVDRLSEREMTAKNWKFVRIMNQ-SGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLA 236 (880)
Q Consensus 158 ~~~li~~l~~~~~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~ 236 (880)
|-..+..+..++++..-...|+.... ..+.-....|...+......+-++.+..++++.++..| ..-+-.|.
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P-------~~~eeyie 177 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP-------EAREEYIE 177 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH-------HHHHHHHH
Confidence 33444444455555554444444332 11122223444455555555555555555555544322 23444445
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC-----CCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCchhHhhhhhhcCCC
Q 002795 237 ILGKAGRPHEALRIFNLMLEDC-----NLYPDIAAYHSVAVTLGQVGLLK---ELVKLIERMRQKPSKRIKNMHRKNWDP 308 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~~~~-----g~~pd~~t~~~ll~~~~~~g~~~---~A~~l~~~m~~~g~~~l~~m~~~~f~~ 308 (880)
.+++.++.++|-+.+.....+. .-+.+...|+-+-...++.-+.- ....+++.+...-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf-------------- 243 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF-------------- 243 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC--------------
Confidence 5555555555555555443220 01112223333333333322111 1112222222211
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------------C------ChH
Q 002795 309 VLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQS----------------G------KYD 366 (880)
Q Consensus 309 ~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~----------------g------~~~ 366 (880)
...=...|++|...|.+.|.+++|..+|++....- .++.-|+.+..+|+.- + +++
T Consensus 244 -tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~ 320 (835)
T KOG2047|consen 244 -TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLE 320 (835)
T ss_pred -cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHH
Confidence 12224479999999999999999999999987642 3444455555555421 1 233
Q ss_pred HHHHHHHHHHHcCC-----------CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC----CCCHHHHHHHHHHHH
Q 002795 367 LVHEFFRKMAKSGE-----------AIGALTYKVLVRAFWEEGKINEAVAAVRNMEQR-GV----VGTASVYYELACCLC 430 (880)
Q Consensus 367 ~A~~l~~~m~~~g~-----------~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~----~p~~~t~~~Li~~~~ 430 (880)
....-|+.+...+. +.++..|..-+. +..|+..+-...|.+.... ++ -.-...|..+...|-
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHH
Confidence 34445555544321 223444443333 2346777778888887653 11 112345888899999
Q ss_pred hCCCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHhhC------------C------CCCHH
Q 002795 431 NNGRWQDAMLVVEKIKSLRHSKPL--EITFTGLIISSMDGGHIDDCISIFQHMKDH------------C------EPNIG 490 (880)
Q Consensus 431 ~~g~~~~A~~l~~~m~~~~~~~p~--~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~------------~------~pd~~ 490 (880)
.+|+++.|..+|++..+..-...+ ..+|..-..+-.+..+++.|.++.+....- . -.+..
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 999999999999998762111111 123333334445667788888877765421 0 11345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 002795 491 TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEASATAHQWEYFEYVYKGMALSGCQ 569 (880)
Q Consensus 491 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~-t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~ 569 (880)
.|...++..-..|-++....+|+++....+ ..|-.+ -|..++. .+.-++++.+++++=+..=--
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLri------------aTPqii~NyAmfLE---eh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRI------------ATPQIIINYAMFLE---EHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhc------------CCHHHHHHHHHHHH---hhHHHHHHHHHHHcCCccCCC
Confidence 677777777778999999999999998763 345332 3433332 334567777777663332123
Q ss_pred CC-HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHhhhCCCccC
Q 002795 570 LD-QTKHAWLLVEASR---AGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV----QSNYEKAVALINAMAYAPFHIT 641 (880)
Q Consensus 570 pd-~~~~~~ll~~~~~---~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~~~~p~ 641 (880)
|+ -..|+..+..+.+ .-+++.|..+|++..+ |.+|...- ++...|++ .|....|+.++++... ++++.
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aK--tiyLlYA~lEEe~GLar~amsiyerat~-~v~~a 619 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAK--TIYLLYAKLEEEHGLARHAMSIYERATS-AVKEA 619 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHH
Confidence 44 3467777776643 2379999999999998 55554332 23333333 3778899999999753 33443
Q ss_pred H--HHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHhccchhhhhhhccccccccc
Q 002795 642 E--RQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFGSQAID 711 (880)
Q Consensus 642 ~--~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~~~~v~ 711 (880)
. ..|+.+|+-....--+.....++++.++. .|+.-......++.+.-++.|..+.|..++...+..-+
T Consensus 620 ~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~d 689 (835)
T KOG2047|consen 620 QRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICD 689 (835)
T ss_pred HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCC
Confidence 3 25777777544444455568888888887 35676777777888999999999999999877554433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-09 Score=118.25 Aligned_cols=284 Identities=14% Similarity=0.096 Sum_probs=222.5
Q ss_pred CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCCHHHH
Q 002795 205 SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLY-PDIAAYHSVAVTLGQVGLLKEL 283 (880)
Q Consensus 205 ~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~-pd~~t~~~ll~~~~~~g~~~~A 283 (880)
+..+|...|+...... .-..++...+..+|...+++++|.++|+.+.+..... -+...|.+.+.-+-+. -+
T Consensus 334 ~~~~A~~~~~klp~h~----~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~ 405 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH----YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VA 405 (638)
T ss_pred HHHHHHHHHHhhHHhc----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HH
Confidence 4678888888743221 1234788889999999999999999999998752221 2678888888765432 22
Q ss_pred HHHHH-HHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHH
Q 002795 284 VKLIE-RMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP-SAATYGLAMEVMLQ 361 (880)
Q Consensus 284 ~~l~~-~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~ 361 (880)
+..+. .+... .+-...+|-++.++|..+++.+.|++.|++..+. .| ..++|+.+.+-+..
T Consensus 406 Ls~Laq~Li~~----------------~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~ 467 (638)
T KOG1126|consen 406 LSYLAQDLIDT----------------DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIA 467 (638)
T ss_pred HHHHHHHHHhh----------------CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhh
Confidence 23222 22222 4556789999999999999999999999999874 55 78899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 002795 362 SGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLV 441 (880)
Q Consensus 362 ~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l 441 (880)
...+|.|...|+..+... +.+-..|.-|...|.+.++++.|.-.|+...+-++. +.+....+...+.+.|+.++|+.+
T Consensus 468 ~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~ 545 (638)
T KOG1126|consen 468 TEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQL 545 (638)
T ss_pred hHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHH
Confidence 999999999999988764 234456666788999999999999999999987765 444455677778899999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 442 VEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 442 ~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
+++........| ..--.....+...++.++|...++++++-++.+...+..+...|.+.|+.+.|+.-|--+...
T Consensus 546 ~~~A~~ld~kn~--l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 546 YEKAIHLDPKNP--LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHhcCCCCc--hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 999987333222 333334455667899999999999999988889999999999999999999999999998884
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-08 Score=99.64 Aligned_cols=266 Identities=16% Similarity=0.162 Sum_probs=131.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCC
Q 002795 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD--IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308 (880)
Q Consensus 231 ~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd--~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~ 308 (880)
--+|.+.|-+.|..+.|+++.+.+..+++.+-+ ....-.|..-|...|-++.|..+|..+...+
T Consensus 72 ~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-------------- 137 (389)
T COG2956 72 HLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-------------- 137 (389)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch--------------
Confidence 334444444444455555444444443111111 1122233444555555555555555554432
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccH
Q 002795 309 VLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS----AATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGA 384 (880)
Q Consensus 309 ~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~ 384 (880)
.--.....-|+..|-...+|++|+++-+++.+.+-.+. ...|.-+...+....+++.|..++.+..+.+ +..+
T Consensus 138 --efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cv 214 (389)
T COG2956 138 --EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCV 214 (389)
T ss_pred --hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccce
Confidence 12223344455556666666666666665555443332 1234444444445556666666666666553 2223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 002795 385 LTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS 464 (880)
Q Consensus 385 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a 464 (880)
..--.+.+.+...|+++.|++.++...+.++.--..+...|..+|.+.|+.++....+.++.+ . .+....-..+-..
T Consensus 215 RAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~-~--~~g~~~~l~l~~l 291 (389)
T COG2956 215 RASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME-T--NTGADAELMLADL 291 (389)
T ss_pred ehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-c--cCCccHHHHHHHH
Confidence 333345556666666666666666666665544445556666666666766666666666655 2 2222222222222
Q ss_pred HHhCCCHHHHHHH-HHHHhhCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHc
Q 002795 465 SMDGGHIDDCISI-FQHMKDHCEPNIGTVNAMLKVYSR---NDMFSKAKELFEETTRA 518 (880)
Q Consensus 465 ~~~~g~~~~A~~i-~~~m~~~~~pd~~~~~~Li~~~~~---~g~~~~A~~lf~~m~~~ 518 (880)
.....-.+.|..+ .+.+.. .|+...+..+|..-.. .|...+.+.+++.|...
T Consensus 292 ie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 292 IELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 2223333333333 333333 2666666666665433 23455555566666543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-07 Score=101.09 Aligned_cols=405 Identities=10% Similarity=0.029 Sum_probs=231.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHH
Q 002795 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFT-EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLA 236 (880)
Q Consensus 158 ~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~ 236 (880)
+...-+-+.+++.+++|++.|.+.+... |+ +.-|......|...|+|++..+.--..++..| .-+.++..-.+
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P----~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNP----DYVKALLRRAS 191 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc----HHHHHHHHHHH
Confidence 3444556778899999999999988764 66 67778888888999999998888887776554 23445666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH--------HHHHh-CCchhHhhhhhhcCC
Q 002795 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLI--------ERMRQ-KPSKRIKNMHRKNWD 307 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~--------~~m~~-~g~~~l~~m~~~~f~ 307 (880)
++-..|++++|+.-.. -.+++.++....-.--+.+++ .+-.+ .+..
T Consensus 192 A~E~lg~~~eal~D~t--------------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p----------- 246 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVT--------------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPP----------- 246 (606)
T ss_pred HHHhhccHHHHHHhhh--------------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCC-----------
Confidence 6777777777653222 222222222222222222222 22111 1100
Q ss_pred CCCCCCHHHHHHHHHHHhcC--------CC-H----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002795 308 PVLEPDLVVYNAVLNACVPS--------HQ-W----KGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRK 374 (880)
Q Consensus 308 ~~~~pd~~ty~~ll~~~~~~--------g~-~----~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~ 374 (880)
.-|.....++..+.+-.. ++ . .++++.+..-. .. .+..|...+.+
T Consensus 247 --~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~-------~e-------------~Y~~a~~~~te 304 (606)
T KOG0547|consen 247 --VLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGL-------EE-------------GYLKAYDKATE 304 (606)
T ss_pred --CCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhC-------ch-------------hHHHHHHHHHH
Confidence 334444333333332110 00 0 11111111100 00 11111111111
Q ss_pred HHHc---CCCcc---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 002795 375 MAKS---GEAIG---------ALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVV 442 (880)
Q Consensus 375 m~~~---g~~~d---------~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~ 442 (880)
-... ....+ +.+.+.-..-+.-.|+.-.|..-|+........++.. |--+..+|.+..+.++....|
T Consensus 305 ~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F 383 (606)
T KOG0547|consen 305 ECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDF 383 (606)
T ss_pred HhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHH
Confidence 1000 00000 1122222223445677777777777777766554442 555666677777777777777
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 002795 443 EKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSG 522 (880)
Q Consensus 443 ~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~ 522 (880)
....+.....|| +|..-...+.-.+++++|..=|++...-.+-++..|-.+..+.-+.+.+++++..|++..+.
T Consensus 384 ~~A~~ldp~n~d--vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk---- 457 (606)
T KOG0547|consen 384 NKAEDLDPENPD--VYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK---- 457 (606)
T ss_pred HHHHhcCCCCCc--hhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 777764433343 45555555556677777877777777755556677777777777777888888888887774
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----C--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002795 523 YTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSG-----C--QLDQTKHAWLLVEASRAGKCHLLEHAF 595 (880)
Q Consensus 523 ~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g-----~--~pd~~~~~~ll~~~~~~G~~~~A~~~~ 595 (880)
+.--+..|+.....+...++++.|.+.|+..++.. + .+.+.+.-+++..-- .+++..|..++
T Consensus 458 ----------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll 526 (606)
T KOG0547|consen 458 ----------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLL 526 (606)
T ss_pred ----------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHH
Confidence 33355677777777777888888888887776531 1 112233333333222 27888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 002795 596 DSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 634 (880)
Q Consensus 596 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 634 (880)
++..+.+. .....|..|...-.++|+.++|+++|++-.
T Consensus 527 ~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 527 RKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88877542 234566677777778888888888888764
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.5e-08 Score=98.04 Aligned_cols=301 Identities=15% Similarity=0.096 Sum_probs=220.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH
Q 002795 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI 237 (880)
Q Consensus 158 ~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~ 237 (880)
|-.-++.|. .+..++|.++|-+|.+.. +-+..+..+|.+.|.+.|..+.|.++++.+.+...-....-..+.-.|..-
T Consensus 39 Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 39 YVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 333344433 567889999999998754 556677788999999999999999999988764332222234567778888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHH--
Q 002795 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV-- 315 (880)
Q Consensus 238 ~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~-- 315 (880)
|...|-++.|..+|..+.+.+. --..+...|+..|-...++++|.++-+++.+.+ ..+..+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~---------------~q~~~~eI 179 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGE--FAEGALQQLLNIYQATREWEKAIDVAERLVKLG---------------GQTYRVEI 179 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchh--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC---------------CccchhHH
Confidence 9999999999999999987511 124466788999999999999999999998876 333322
Q ss_pred --HHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 002795 316 --VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRA 393 (880)
Q Consensus 316 --ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~ 393 (880)
.|--+-..+....+.+.|..++.+..+...+ .+..--.+.......|++..|.+.++.+.+.+...-..+...|..+
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~ 258 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYEC 258 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 3455556666788999999999999876422 3444455667788999999999999999999866667788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC---CC
Q 002795 394 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDG---GH 470 (880)
Q Consensus 394 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~---g~ 470 (880)
|...|+.++....+..+.+....++.. ..+...-....-.+.|...+.+-.. .+|+...+..+|..-... |.
T Consensus 259 Y~~lg~~~~~~~fL~~~~~~~~g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAMETNTGADAE--LMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHccCCccHH--HHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhhhccccccc
Confidence 999999999999999998875554432 2233333344455666666555444 579999999999876543 33
Q ss_pred HHHHHHHHHHHhh
Q 002795 471 IDDCISIFQHMKD 483 (880)
Q Consensus 471 ~~~A~~i~~~m~~ 483 (880)
..+-...+..|..
T Consensus 334 ~k~sL~~lr~mvg 346 (389)
T COG2956 334 AKESLDLLRDMVG 346 (389)
T ss_pred hhhhHHHHHHHHH
Confidence 4444455555543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-07 Score=99.26 Aligned_cols=285 Identities=14% Similarity=0.082 Sum_probs=234.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 002795 327 SHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAA 406 (880)
Q Consensus 327 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~ 406 (880)
.|+|..|+++..+-.+.+-.| ...|.....+.-..|+.+.+-+++.+..+.--.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 699999999999988877543 4456777788889999999999999999874467788888889999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCH-------HHHHHHHHHHHhCCCHHHHHHHHH
Q 002795 407 VRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-------ITFTGLIISSMDGGHIDDCISIFQ 479 (880)
Q Consensus 407 ~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~-------~t~~~ll~a~~~~g~~~~A~~i~~ 479 (880)
++++.+.+..+ .........+|.+.|++.....++..|.+ .+...++ .+|..+++-+...+..+.-...++
T Consensus 176 v~~ll~~~pr~-~~vlrLa~r~y~~~g~~~~ll~~l~~L~k-a~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLLEMTPRH-PEVLRLALRAYIRLGAWQALLAILPKLRK-AGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHhCcCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHH-ccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999988764 45578899999999999999999999998 5555444 368899998888888888888999
Q ss_pred HHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002795 480 HMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYV 559 (880)
Q Consensus 480 ~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l 559 (880)
......+.++..-.+++.-+.++|+.++|.++..+..+.+ ..|. -..+-.+.+.++...-.+.
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~-------------~D~~----L~~~~~~l~~~d~~~l~k~ 316 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ-------------WDPR----LCRLIPRLRPGDPEPLIKA 316 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-------------cChh----HHHHHhhcCCCCchHHHHH
Confidence 8888777778888899999999999999999999999876 3444 2223345566776666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 002795 560 YKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 634 (880)
Q Consensus 560 ~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 634 (880)
.++-.+. ..-++..+.+|-..|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+.++|.+..++..
T Consensus 317 ~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 317 AEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 6655443 2233577888888899999999999999977764 5999999999999999999999999988865
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.9e-07 Score=97.58 Aligned_cols=459 Identities=10% Similarity=0.039 Sum_probs=275.6
Q ss_pred CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHH
Q 002795 150 RWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF 229 (880)
Q Consensus 150 ~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~ 229 (880)
+...++.....+.+.+.-.+.++.|..++..-.-. .-|..........+.+...|++|..++... .....+...+..
T Consensus 44 ~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~-~~~~~~f~yy~~ 120 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRG-HVETNPFSYYEK 120 (611)
T ss_pred hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhccc-chhhcchhhcch
Confidence 34478888889999999999999998876554322 347777888888888999999999998722 000000000000
Q ss_pred H----------H-----HHHHH-------HHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002795 230 V----------Y-----TKLLA-------ILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLI 287 (880)
Q Consensus 230 ~----------~-----~~Ll~-------~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~ 287 (880)
. + +.-.+ .|....+.++|...|.+.... |...|..+...-... .-.+.+.+
T Consensus 121 ~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~-----D~~c~Ea~~~lvs~~--mlt~~Ee~ 193 (611)
T KOG1173|consen 121 DAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA-----DAKCFEAFEKLVSAH--MLTAQEEF 193 (611)
T ss_pred hhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc-----chhhHHHHHHHHHHH--hcchhHHH
Confidence 0 0 11111 222233445555555554432 444443332211111 11111112
Q ss_pred HHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 002795 288 ERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDL 367 (880)
Q Consensus 288 ~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 367 (880)
+.+....-. | ...-++...-.+.........-+.....-.+-.-.|+.-+......-..-|...+++.+
T Consensus 194 ~ll~~l~~a----~-------~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~ 262 (611)
T KOG1173|consen 194 ELLESLDLA----M-------LTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKE 262 (611)
T ss_pred HHHhcccHH----h-------hhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHH
Confidence 222111000 0 00111111111111110000000000000001111233455555555666777788888
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002795 368 VHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 368 A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
...+++.+.+.. ++....+..-|..+...|+..+-..+=..|.+..+. ...+|-++..-|...|+..+|.+.|.+...
T Consensus 263 c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seARry~SKat~ 340 (611)
T KOG1173|consen 263 CLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEARRYFSKATT 340 (611)
T ss_pred HHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHHHHHHHHhh
Confidence 888888888774 566667777777888888877777777777766543 455677777777778888888888887754
Q ss_pred cCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccc
Q 002795 448 LRHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFL 526 (880)
Q Consensus 448 ~~~~~p~-~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l 526 (880)
+.|. ...|.....+|+-.|..++|+..+....+-++....-+--+.--|.+.+.+..|.++|.+...
T Consensus 341 ---lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--------- 408 (611)
T KOG1173|consen 341 ---LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--------- 408 (611)
T ss_pred ---cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh---------
Confidence 3332 246777788888888888888887776653222211122234457777888888888888877
Q ss_pred CCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002795 527 SGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALS--GC----QLDQTKHAWLLVEASRAGKCHLLEHAFDSLL 599 (880)
Q Consensus 527 ~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~--g~----~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~ 599 (880)
+-| |+..++-+.......+.+.+|..+|+..... .+ .--..+++.|...|.+++.+++|...|++..
T Consensus 409 ------i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 409 ------IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred ------cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 445 6667777666666677888888888876621 01 1135567888888899999999999998877
Q ss_pred HCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHh
Q 002795 600 EAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESN 652 (880)
Q Consensus 600 ~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~ 652 (880)
... +.+..++.++.-.|...|+++.|++.|.+.. .+.|+..+.+.+|+.+
T Consensus 483 ~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 483 LLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 753 3466677777777777899999999999887 6788888888877744
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=8e-08 Score=102.70 Aligned_cols=215 Identities=12% Similarity=0.005 Sum_probs=118.7
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHHHHHHHHHH
Q 002795 468 GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEA 546 (880)
Q Consensus 468 ~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a 546 (880)
+|+.-.|..-|+...+..+.+...|--+..+|....+.++....|++....+ | |..+|..-.+.
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld---------------p~n~dvYyHRgQm 403 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD---------------PENPDVYYHRGQM 403 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC---------------CCCCchhHhHHHH
Confidence 5666666666666665433333335555666666666666666666666633 3 34455555555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHH
Q 002795 547 SATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEK 625 (880)
Q Consensus 547 ~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 625 (880)
..-.+++++|..=|++.+. +.|. ...|..+-.+.-+.+++++++..|+..+++ ++-.+..|+-....+..+++++.
T Consensus 404 ~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~ 480 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDK 480 (606)
T ss_pred HHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHH
Confidence 5555666666666666653 3443 344444444444666677777777666553 22334455555566666666777
Q ss_pred HHHHHHHhhh-----CCCccCHHHHH--HHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHhccchhh
Q 002795 626 AVALINAMAY-----APFHITERQWT--ELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERD 698 (880)
Q Consensus 626 A~~l~~~m~~-----~~~~p~~~~~~--~ll~a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~e 698 (880)
|.+.|+.... .++..+...+. .++-. .-.+++..|.+++++.++.++. ++.....+ .....+.|+.++
T Consensus 481 A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tl---aq~~lQ~~~i~e 555 (606)
T KOG0547|consen 481 AVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPK-CEQAYETL---AQFELQRGKIDE 555 (606)
T ss_pred HHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCch-HHHHHHHH---HHHHHHHhhHHH
Confidence 7766666541 12222222221 11111 2336666777777777776666 55444443 555566677777
Q ss_pred hhhhccc
Q 002795 699 LSSSAHF 705 (880)
Q Consensus 699 a~~~~~~ 705 (880)
|+++|..
T Consensus 556 AielFEk 562 (606)
T KOG0547|consen 556 AIELFEK 562 (606)
T ss_pred HHHHHHH
Confidence 7666544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-07 Score=96.96 Aligned_cols=287 Identities=11% Similarity=0.078 Sum_probs=223.4
Q ss_pred CCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002795 203 KGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKE 282 (880)
Q Consensus 203 ~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~ 282 (880)
.|+|.+|+++....-+.++ .....|..-..+.-..|+.+.|-.++.+..+. .-.++...+-+........|++..
T Consensus 97 eG~~~qAEkl~~rnae~~e----~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-~~~~~l~v~ltrarlll~~~d~~a 171 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE----QPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-AGDDTLAVELTRARLLLNRRDYPA 171 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc----chHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHhCCCchh
Confidence 5889999888887654332 23456667777777889999999999988874 234556667777778888899999
Q ss_pred HHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHH
Q 002795 283 LVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA-------ATYGLA 355 (880)
Q Consensus 283 A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~l 355 (880)
|..-++++.+. .+.+.........+|.+.|++.....++..|.+.|+--+. .+|..+
T Consensus 172 A~~~v~~ll~~----------------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 172 ARENVDQLLEM----------------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHHHHHHHHHh----------------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 99888888876 4667788888999999999999999999999988876553 467777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 002795 356 MEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW 435 (880)
Q Consensus 356 l~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~ 435 (880)
+.-+...+..+.-...++....+ ...++..-.+++.-+.++|+.++|.++..+..+++..|...+ .-.+.+.++.
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~ 310 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDP 310 (400)
T ss_pred HHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCc
Confidence 77777777766666777776654 344566777888899999999999999999999887665222 2235677777
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002795 436 QDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEET 515 (880)
Q Consensus 436 ~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m 515 (880)
..-++..+.-.+..+..| ..+.+|-..|.+.+.+.+|...|+...+ ..|+..+|+.+.++|.+.|+..+|.+++++.
T Consensus 311 ~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~-~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 311 EPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK-LRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 777777777766445455 5678888899999999999999995554 5699999999999999999999999999987
Q ss_pred HHc
Q 002795 516 TRA 518 (880)
Q Consensus 516 ~~~ 518 (880)
...
T Consensus 388 L~~ 390 (400)
T COG3071 388 LLL 390 (400)
T ss_pred HHH
Confidence 753
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.4e-08 Score=101.88 Aligned_cols=198 Identities=12% Similarity=0.079 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 002795 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (880)
Q Consensus 192 ~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll 271 (880)
.+..+...+...|++++|...++.+++..+ .+...+..+...|...|++++|.+.|++..+. .+.+...+..+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~ 106 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDP----DDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHH
Confidence 334444444444444444444444443221 22334444444444445555555554444432 122333444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 002795 272 VTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAAT 351 (880)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 351 (880)
..+...|++++|...|........ .......+..+..++...|++++|...|.+..... +.+...
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 171 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPL--------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPES 171 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccc--------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHH
Confidence 444445555555555554443210 11122334444444555555555555555544432 112334
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002795 352 YGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNME 411 (880)
Q Consensus 352 ~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 411 (880)
+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+.
T Consensus 172 ~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 172 LLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444555555555555555555555444 22334444445555555555555555555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-10 Score=87.35 Aligned_cols=50 Identities=26% Similarity=0.636 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002795 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQ 361 (880)
Q Consensus 312 pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 361 (880)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.8e-08 Score=99.60 Aligned_cols=201 Identities=16% Similarity=0.106 Sum_probs=149.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcC
Q 002795 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (880)
Q Consensus 227 d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f 306 (880)
....+..+...|...|++++|...|++..+. .+.+...+..+...+...|++++|.+.+++..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------- 94 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL------------- 94 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------------
Confidence 3567888888889999999999999988764 3345677788888888899999999999888775
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHH
Q 002795 307 DPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP-SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGAL 385 (880)
Q Consensus 307 ~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~ 385 (880)
.+.+...+..+...+...|++++|...|.+.......| ....+..+..++...|++++|...+.+..+.. +.+..
T Consensus 95 ---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 170 (234)
T TIGR02521 95 ---NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPE 170 (234)
T ss_pred ---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChH
Confidence 34456677778888888899999999888887643222 34455666777778888888888888877764 33456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002795 386 TYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 386 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
.+..+...+...|++++|...+++..... ..+...+..++..+...|+.+.|..+.+.+..
T Consensus 171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 171 SLLELAELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 67777778888888888888888777652 33445555666777777788877777766654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.8e-06 Score=86.48 Aligned_cols=449 Identities=11% Similarity=0.069 Sum_probs=229.5
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHH
Q 002795 162 VDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLL-KGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGK 240 (880)
Q Consensus 162 i~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll-~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~ 240 (880)
++-+..+.++..|..+++.-...+- -........| ..+-+.|++++|..++..+.+. ..++...+-.|.-.+.-
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~----~~~~~el~vnLAcc~Fy 103 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK----DDAPAELGVNLACCKFY 103 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc----CCCCcccchhHHHHHHH
Confidence 3344456677788777776654442 2222333333 3445778888888888876542 22555666666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHH
Q 002795 241 AGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAV 320 (880)
Q Consensus 241 ~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~l 320 (880)
.|.+.+|..+-....+ ++..-..|+....+.++-++-..+...+.... -|. -+|
T Consensus 104 Lg~Y~eA~~~~~ka~k------~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----------------Edq---LSL 157 (557)
T KOG3785|consen 104 LGQYIEAKSIAEKAPK------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----------------EDQ---LSL 157 (557)
T ss_pred HHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----------------HHH---HhH
Confidence 7888888776655443 34444455555566677666666666554321 111 122
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 002795 321 LNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEV-MLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGK 399 (880)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~ 399 (880)
.+..-..-.+.+|+++|...... .|+-...|.-+.. |.+..-++-+..+++--.+. ++.+....|.......+.=.
T Consensus 158 AsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~n 234 (557)
T KOG3785|consen 158 ASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLIN 234 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhc
Confidence 22222233577788888877654 3454444544433 35666666677776665554 33344555555444444322
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 002795 400 INEAVAAVRNMEQRGVVGTASVYYELACCLCNNG-----RWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDC 474 (880)
Q Consensus 400 ~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g-----~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A 474 (880)
-..|..-..++.+.+-.. |- .+.-+++.. .-+.|++++-.+.+ ..|. +-..|+--|.+.+++.+|
T Consensus 235 gr~ae~E~k~ladN~~~~----~~-f~~~l~rHNLVvFrngEgALqVLP~L~~---~IPE--ARlNL~iYyL~q~dVqeA 304 (557)
T KOG3785|consen 235 GRTAEDEKKELADNIDQE----YP-FIEYLCRHNLVVFRNGEGALQVLPSLMK---HIPE--ARLNLIIYYLNQNDVQEA 304 (557)
T ss_pred cchhHHHHHHHHhccccc----ch-hHHHHHHcCeEEEeCCccHHHhchHHHh---hChH--hhhhheeeecccccHHHH
Confidence 233333344443332211 11 222233322 23456666555443 2232 223444456677777777
Q ss_pred HHHHHHHhhCCCCCHHHHH-------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHH-HHHHHHHH
Q 002795 475 ISIFQHMKDHCEPNIGTVN-------AMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEA 546 (880)
Q Consensus 475 ~~i~~~m~~~~~pd~~~~~-------~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~-t~~~ll~a 546 (880)
..+.+.+.- .++.-|- .+..-.....+..-|.+.|+-.-..+ ..-|.. .--++...
T Consensus 305 ~~L~Kdl~P---ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa-------------~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 305 ISLCKDLDP---TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESA-------------LECDTIPGRQSMASY 368 (557)
T ss_pred HHHHhhcCC---CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc-------------cccccccchHHHHHH
Confidence 766555432 1222221 11111111223445555555443333 122211 12233334
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHhCCHHH
Q 002795 547 SATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLI-QAIVQSNYEK 625 (880)
Q Consensus 547 ~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~ 625 (880)
+.-..+++..+-.++.+..-=..-|.+.+ .+..+++..|.+.+|+++|-.+....+ .+..+|-+++. +|.+.++.+.
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchH
Confidence 44445566666666555443222223333 455667777777777777766544332 34455555543 3444466777
Q ss_pred HHHHHHHhhhCCCccCHHHHHHHHH-HhhhccCHHHHHHHHHHHHhCCCCC
Q 002795 626 AVALINAMAYAPFHITERQWTELFE-SNEDRISRDKLEKLLNALCNCNAAS 675 (880)
Q Consensus 626 A~~l~~~m~~~~~~p~~~~~~~ll~-a~~~~~~~~~a~~l~~~~~~~~~~p 675 (880)
|..++-++- ...+..+...++. .|.+.+..--+.+.|..+...++.|
T Consensus 447 AW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 447 AWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 777666652 2333444444444 4666666666666666666666543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-07 Score=109.85 Aligned_cols=250 Identities=11% Similarity=-0.050 Sum_probs=149.3
Q ss_pred CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 002795 205 SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGK---------AGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLG 275 (880)
Q Consensus 205 ~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~---------~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~ 275 (880)
.+++|..+|+.+++..| .+...|..+..+|.. .+++++|...+++..+. -+-+..+|..+...+.
T Consensus 276 ~~~~A~~~~~~Al~ldP----~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~ 349 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP----NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 35677777777766544 344555555544432 23467777777777763 2335666666666777
Q ss_pred hcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002795 276 QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLA 355 (880)
Q Consensus 276 ~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 355 (880)
..|++++|...|++..+. .+.+...|..+...|...|++++|...+++..+.... +...+..+
T Consensus 350 ~~g~~~~A~~~~~~Al~l----------------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~ 412 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLL----------------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITK 412 (553)
T ss_pred HccCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHH
Confidence 777777777777777764 3344556666777777777787787777777765322 22222333
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 002795 356 MEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW 435 (880)
Q Consensus 356 l~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~ 435 (880)
+..+...|++++|...++++.+...+.+...+..+..+|...|++++|...+.++...... +....+.+...|+..|
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-- 489 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS-- 489 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--
Confidence 4445567777777777777766532224455666777777778888888777776544322 2233444555556666
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 002795 436 QDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD 483 (880)
Q Consensus 436 ~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~ 483 (880)
+.|...++.+.+.....+....+..++ |.-.|+-+.+..+ +++.+
T Consensus 490 ~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 490 ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhHHHHHH-HHhhc
Confidence 366666666655444444443443333 3344555555555 55554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.4e-10 Score=84.58 Aligned_cols=50 Identities=28% Similarity=0.544 Sum_probs=33.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002795 382 IGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431 (880)
Q Consensus 382 ~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~ 431 (880)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.||.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-07 Score=111.30 Aligned_cols=250 Identities=10% Similarity=0.006 Sum_probs=172.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCC
Q 002795 242 GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLG---------QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP 312 (880)
Q Consensus 242 g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~---------~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~p 312 (880)
+..++|+.+|++..+. -+-+...|..+..++. ..+++++|...+++..+. .+-
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l----------------dP~ 336 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL----------------DHN 336 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc----------------CCC
Confidence 3568888888888874 5666767766655443 224478899999988875 455
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 002795 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVR 392 (880)
Q Consensus 313 d~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~ 392 (880)
+...|..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.... +...+..++.
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~ 414 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLW 414 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHH
Confidence 67778888778888899999999999988764 224566777888888899999999999998887522 2333444455
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhCCCH
Q 002795 393 AFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT-FTGLIISSMDGGHI 471 (880)
Q Consensus 393 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t-~~~ll~a~~~~g~~ 471 (880)
.+...|++++|...+++.......-+...+..+..+|...|++++|...+.++.. ..|+..+ .+.+...|+..|
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g-- 489 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNS-- 489 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccH--
Confidence 5667888999999998887664332444566677788889999999999888765 3444433 444555566666
Q ss_pred HHHHHHHHHHhhC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002795 472 DDCISIFQHMKDH--CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 519 (880)
Q Consensus 472 ~~A~~i~~~m~~~--~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 519 (880)
+.|...++.+.+. ..+.-..+ +-..|+-.|+.+.+..+ +++.+.+
T Consensus 490 ~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4777777776652 22322223 33345556776666666 8887776
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.8e-05 Score=85.57 Aligned_cols=443 Identities=13% Similarity=0.086 Sum_probs=281.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH
Q 002795 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI 237 (880)
Q Consensus 158 ~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~ 237 (880)
+..++..+ ..+++...+.+.+.+.+ +.+-...+.....-.+...|+.++|.......++ +...+.+.|..+.-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr----~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR----NDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhc----cCcccchhHHHHHHH
Confidence 34444444 46778888888888887 4344556665555566778999999988876654 344678899999988
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHH
Q 002795 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY 317 (880)
Q Consensus 238 ~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty 317 (880)
+-...++++|++.|.....- -+-|...|.-+--.-++.|+++.....-..+.+. .+.....|
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql----------------~~~~ra~w 146 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL----------------RPSQRASW 146 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----------------hhhhHHHH
Confidence 88889999999999998873 2334566666665667778888888877777765 45567789
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHH
Q 002795 318 NAVLNACVPSHQWKGVFWVFKQLRKSG-LKPSAATYGLAM------EVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVL 390 (880)
Q Consensus 318 ~~ll~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll------~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~L 390 (880)
..+..++.-.|+...|..++++..+.. -.|+...|.-.. .....+|.++.|.+.+..-... +.-....--.-
T Consensus 147 ~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~k 225 (700)
T KOG1156|consen 147 IGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETK 225 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhH
Confidence 999999999999999999999998654 246666655433 2345778888888777655443 22223344456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhCCCHHHHH-HHHHHHHhcC--CCCCCHHHHHHHHHHHH
Q 002795 391 VRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYE-LACCLCNNGRWQDAM-LVVEKIKSLR--HSKPLEITFTGLIISSM 466 (880)
Q Consensus 391 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-Li~~~~~~g~~~~A~-~l~~~m~~~~--~~~p~~~t~~~ll~a~~ 466 (880)
...+.+.+++++|..++..+..++ ||..-|+. +..++.+-.+.-+++ .+|....+.. ...|-....+.+ .
T Consensus 226 a~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl----~ 299 (700)
T KOG1156|consen 226 ADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL----N 299 (700)
T ss_pred HHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh----C
Confidence 677889999999999999999886 55555554 444443333333344 5565554411 111111111111 1
Q ss_pred hCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccc--CCCCCCCCCCHH--HHH
Q 002795 467 DGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFL--SGDGAPLKPDEY--TYS 541 (880)
Q Consensus 467 ~~g~~~~A~~i~~~m~~-~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l--~~~~~~~~Pd~~--t~~ 541 (880)
...-.+....++..+.. |+++- +..+...|-.-...+-..++.-.+.. ..++...+ .+.+..-.|... |+-
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~-~L~~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQH-SLSGTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHh-hcccccCCCcccccccCCchHHHHHHH
Confidence 11122233334444433 44432 33333334322222211111111111 11111111 111111244544 455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 002795 542 SMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQ 620 (880)
Q Consensus 542 ~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 620 (880)
.++..+-+.|+++.|....+..+. ..|+ ...|..=.+.+.+.|.+++|...+++..+.+ .||...-.-......++
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHc
Confidence 667788888999999999999885 4676 3455555577899999999999999988865 36666665677777888
Q ss_pred CCHHHHHHHHHHhhhCCC
Q 002795 621 SNYEKAVALINAMAYAPF 638 (880)
Q Consensus 621 g~~~~A~~l~~~m~~~~~ 638 (880)
.+.++|..+.......|.
T Consensus 453 n~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cccHHHHHHHHHhhhccc
Confidence 999999999888876664
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.3e-06 Score=86.09 Aligned_cols=422 Identities=11% Similarity=0.079 Sum_probs=256.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHH
Q 002795 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILG 239 (880)
Q Consensus 160 ~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~ 239 (880)
.+...+.+-|++++|+..|..+.+.. .++......|...+.-.|.+.+|.++-...- .++..-..|...-.
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~--------k~pL~~RLlfhlah 132 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAP--------KTPLCIRLLFHLAH 132 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCC--------CChHHHHHHHHHHH
Confidence 34556678899999999999988766 5666666666666667889999999877541 23333444455555
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHH
Q 002795 240 KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNA 319 (880)
Q Consensus 240 ~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ 319 (880)
+.++-++-..+-..+.. ...---+|.+..-..-.+.+|.++|..... ..|+-...|.
T Consensus 133 klndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~-----------------dn~ey~alNV 189 (557)
T KOG3785|consen 133 KLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQ-----------------DNPEYIALNV 189 (557)
T ss_pred HhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh-----------------cChhhhhhHH
Confidence 66777666666555544 223333444444455578999999999987 4567777776
Q ss_pred HHHH-HhcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 002795 320 VLNA-CVPSHQWKGVFWVFKQLRKSGLKPSA-ATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEE 397 (880)
Q Consensus 320 ll~~-~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~ 397 (880)
-+.. |.+..-++-+.+++..-.+. -||. ...|.......+.=.-..|++-...+...+-.. | -.+.-.++.
T Consensus 190 y~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rH 262 (557)
T KOG3785|consen 190 YMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRH 262 (557)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHc
Confidence 5554 66777778888888777654 3443 333433333333222223444444444443111 1 122222332
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-----HHh
Q 002795 398 -----GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS-----SMD 467 (880)
Q Consensus 398 -----g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a-----~~~ 467 (880)
..-+.|++++--+.+. .|... .| |+--|.+.+++.+|..+.+.+ ....|-....-.++.+ ...
T Consensus 263 NLVvFrngEgALqVLP~L~~~--IPEAR-lN-L~iYyL~q~dVqeA~~L~Kdl---~PttP~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKH--IPEAR-LN-LIIYYLNQNDVQEAISLCKDL---DPTTPYEYILKGVVFAALGQETGS 335 (557)
T ss_pred CeEEEeCCccHHHhchHHHhh--ChHhh-hh-heeeecccccHHHHHHHHhhc---CCCChHHHHHHHHHHHHhhhhcCc
Confidence 3446677776655543 33332 23 555688999999998886665 3455655544444332 233
Q ss_pred CCCHHHHHHHHHHHhh-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHH
Q 002795 468 GGHIDDCISIFQHMKD-HCE-PNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLE 545 (880)
Q Consensus 468 ~g~~~~A~~i~~~m~~-~~~-pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~ 545 (880)
..++.-|.+.|+..-+ ... .++.---+|.+.+.-..++++.+-.+..+..- +.-|...--.+.+
T Consensus 336 reHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY--------------F~NdD~Fn~N~AQ 401 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY--------------FTNDDDFNLNLAQ 401 (557)
T ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hcCcchhhhHHHH
Confidence 3456777777777655 222 22333445666667777889998888888774 3344343345678
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHhCCH
Q 002795 546 ASATAHQWEYFEYVYKGMALSGCQLDQTKHAWL-LVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEM-LIQAIVQSNY 623 (880)
Q Consensus 546 a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~l-l~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~ 623 (880)
+.+..|++.+|+++|-++....+ .|..+|.++ .++|.++++.+.|++++-.+.. ..+..+.-.+ ...|++.+.+
T Consensus 402 Ak~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHH
Confidence 88889999999999966543222 356666654 4567899999888776654432 2233333333 3566777776
Q ss_pred HHHHHHHHHhhhCCCccCHHHHHH
Q 002795 624 EKAVALINAMAYAPFHITERQWTE 647 (880)
Q Consensus 624 ~~A~~l~~~m~~~~~~p~~~~~~~ 647 (880)
--|-+-|+.+. ...|++.-|..
T Consensus 478 yyaaKAFd~lE--~lDP~pEnWeG 499 (557)
T KOG3785|consen 478 YYAAKAFDELE--ILDPTPENWEG 499 (557)
T ss_pred HHHHHhhhHHH--ccCCCccccCC
Confidence 55555555554 34677777763
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.6e-06 Score=90.12 Aligned_cols=292 Identities=15% Similarity=0.106 Sum_probs=226.6
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHH
Q 002795 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKV 389 (880)
Q Consensus 310 ~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~ 389 (880)
...|......-..-|...+++.+..++++...+.. +++...+..=|.++...|+..+-.-+=.+|++. .|....+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 34455555566666788999999999999988653 445556666677888889887777777777776 3667889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 002795 390 LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGG 469 (880)
Q Consensus 390 Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g 469 (880)
+.--|...|+..+|.+.|.+....+..- ...|-.....|+-.|..++|+..+...-+.-...--+..| +-.-|.+.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~f-gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTF-GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccc-cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhc
Confidence 9999999999999999999987665432 2358888899999999999999888776522111112233 334578899
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCC-CCHHHHHHHHHHHH
Q 002795 470 HIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLK-PDEYTYSSMLEASA 548 (880)
Q Consensus 470 ~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~-Pd~~t~~~ll~a~~ 548 (880)
+.+.|.++|.+...-.|-|+...+-+.-.....+.+.+|..+|+..+..-.+ ...-+ .-..+++.|..+|.
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~--------~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS--------VLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh--------ccccccchhHHHHhHHHHHH
Confidence 9999999999999988899999999998888899999999999988742100 00011 13457889999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002795 549 TAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQA 617 (880)
Q Consensus 549 ~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 617 (880)
+.+.+++|...+++.+.. .+-+..+|.++.-.|...|+++.|.+.|.+..- +.|+..+...++..+
T Consensus 467 kl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 999999999999998875 355788999999999999999999999998765 568887777777644
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.3e-05 Score=83.39 Aligned_cols=124 Identities=10% Similarity=0.018 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 002795 494 AMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ 572 (880)
Q Consensus 494 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~-t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~ 572 (880)
.++..|-+.|+++.|...++....+ .|+.+ .|..=.+.+.+.|.++.|..++.+..+.. .+|.
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH---------------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR 439 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH---------------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADR 439 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc---------------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhH
Confidence 3455556666666666666666553 35433 33333455555566666666666655432 2333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CC----HHHHHHH--HHHHHHhCCHHHHHHHHHHh
Q 002795 573 TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEI--PH----PLFFTEM--LIQAIVQSNYEKAVALINAM 633 (880)
Q Consensus 573 ~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~--p~----~~~~~~l--l~~~~~~g~~~~A~~l~~~m 633 (880)
..-.--..-..++..+++|..+.....+.|.. -+ ..+|..+ ..+|.++|++.+|++=|..+
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 33223333344566666666666655554420 00 1122211 24555666666666554444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.5e-06 Score=97.29 Aligned_cols=301 Identities=14% Similarity=0.114 Sum_probs=158.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002795 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352 (880)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 352 (880)
.+...|++++|++.+..-... +......+......+.+.|+.++|..+|..+.+.+ |+...|
T Consensus 13 il~e~g~~~~AL~~L~~~~~~----------------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Y 74 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ----------------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDY 74 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh----------------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHH
Confidence 356778888888888775553 33334444556666888888888888888888764 555554
Q ss_pred HHHHHHHH-Hc-----CChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHH
Q 002795 353 GLAMEVML-QS-----GKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKI-NEAVAAVRNMEQRGVVGTASVYYEL 425 (880)
Q Consensus 353 ~~ll~a~~-~~-----g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~L 425 (880)
-..+..+. -. .+.+....+|+++...- |...+...+.-.+.....+ ..+..++..+..+|+++ +|+.|
T Consensus 75 y~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~l 149 (517)
T PF12569_consen 75 YRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNL 149 (517)
T ss_pred HHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHH
Confidence 44444433 11 24566777777776653 3222222222222222222 34556667777777654 45555
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHH--HHHHHHHHHHhcC
Q 002795 426 ACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIG--TVNAMLKVYSRND 503 (880)
Q Consensus 426 i~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~--~~~~Li~~~~~~g 503 (880)
-..|....+..-...++........ ..+.+.... -...-+|... ++.-+...|...|
T Consensus 150 k~Ly~d~~K~~~i~~l~~~~~~~l~----------------~~~~~~~~~-----~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 150 KPLYKDPEKAAIIESLVEEYVNSLE----------------SNGSFSNGD-----DEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred HHHHcChhHHHHHHHHHHHHHHhhc----------------ccCCCCCcc-----ccccCCchHHHHHHHHHHHHHHHhC
Confidence 5555554444444444444332100 000000000 0001233332 2344455566666
Q ss_pred CHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002795 504 MFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEA 582 (880)
Q Consensus 504 ~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd-~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~ 582 (880)
++++|++++++.+.+ .|+ +..|..-...+-+.|++.+|.+.++....... -|...-+-....+
T Consensus 209 ~~~~Al~~Id~aI~h---------------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 209 DYEKALEYIDKAIEH---------------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYL 272 (517)
T ss_pred CHHHHHHHHHHHHhc---------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHH
Confidence 666666666666663 353 34555555666666666666666666554331 2444444444455
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH------HHH--HHHHHHHHhCCHHHHHHHHHHh
Q 002795 583 SRAGKCHLLEHAFDSLLEAGEIPHPL------FFT--EMLIQAIVQSNYEKAVALINAM 633 (880)
Q Consensus 583 ~~~G~~~~A~~~~~~m~~~g~~p~~~------~~~--~ll~~~~~~g~~~~A~~l~~~m 633 (880)
.++|++++|..++......+..|... .|. ....+|.+.|++..|+.-|..+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56666666666666665544322111 221 2345666666666666555544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-07 Score=95.14 Aligned_cols=229 Identities=11% Similarity=0.102 Sum_probs=195.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC
Q 002795 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (880)
Q Consensus 268 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (880)
+-+..+|.+.|.+.+|.+.|..-.+ ..|-+.||-.|-.+|.+-.+...|+.+|.+-.+. -|
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~-----------------q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP 287 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT-----------------QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FP 287 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh-----------------cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CC
Confidence 6788999999999999999998877 4567778888999999999999999999998764 45
Q ss_pred CHHHH-HHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002795 348 SAATY-GLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELA 426 (880)
Q Consensus 348 d~~t~-~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li 426 (880)
-.+|| ..+.+.+-..++.++|.++|+...+.. +.++.....+...|.-.++.+-|+++|++++..|+. +...|+.+.
T Consensus 288 ~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~Nig 365 (478)
T KOG1129|consen 288 FDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIG 365 (478)
T ss_pred chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHH
Confidence 55554 557778888899999999999999874 556777778888899999999999999999999987 566688888
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 002795 427 CCLCNNGRWQDAMLVVEKIKSLRHSKPLE--ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDM 504 (880)
Q Consensus 427 ~~~~~~g~~~~A~~l~~~m~~~~~~~p~~--~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~ 504 (880)
-+|.-.++++-++.-|.+... .-..|+. ..|-.+-......|++..|.+.|+-...+...+...+|.|.-.-.+.|+
T Consensus 366 LCC~yaqQ~D~~L~sf~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~ 444 (478)
T KOG1129|consen 366 LCCLYAQQIDLVLPSFQRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD 444 (478)
T ss_pred HHHHhhcchhhhHHHHHHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc
Confidence 888899999999999999877 3334544 3566677777788999999999999888777889999999999999999
Q ss_pred HHHHHHHHHHHHHc
Q 002795 505 FSKAKELFEETTRA 518 (880)
Q Consensus 505 ~~~A~~lf~~m~~~ 518 (880)
+++|..+++.....
T Consensus 445 i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 445 ILGARSLLNAAKSV 458 (478)
T ss_pred hHHHHHHHHHhhhh
Confidence 99999999998874
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-07 Score=94.15 Aligned_cols=228 Identities=15% Similarity=0.088 Sum_probs=160.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHH-HHHHH
Q 002795 194 LKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY-HSVAV 272 (880)
Q Consensus 194 ~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~-~~ll~ 272 (880)
+.+.+.|.+.|.+.+|..-|+..+++. +-+.+|-.|-++|.+-.++..|+.+|.+-.+. .|-.+|| .-+.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~-----~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF-----PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC-----CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHH
Confidence 567777778888888888887776643 34456777777888888888888888877763 3444444 44666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002795 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352 (880)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 352 (880)
.+...++.++|.++|+...+. .+-|+....++..+|.-.++.+-|+.+|+++.+.|+. +...|
T Consensus 299 i~eam~~~~~a~~lYk~vlk~----------------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf 361 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKL----------------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELF 361 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhc----------------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHH
Confidence 677777888888888877765 4456666666666677777888888888888888765 66667
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002795 353 GLAMEVMLQSGKYDLVHEFFRKMAKSGEAIG--ALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 430 (880)
Q Consensus 353 ~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d--~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~ 430 (880)
+.+.-+|.-.++++.+...|.+....--.|+ ..+|..|.......|++..|.+.|+-.+..+.. ....+|.|.-.-.
T Consensus 362 ~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~ 440 (478)
T KOG1129|consen 362 CNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAA 440 (478)
T ss_pred hhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHh
Confidence 7777777777888888877777765533232 346666777777778888888888777766643 3455666666667
Q ss_pred hCCCHHHHHHHHHHHHh
Q 002795 431 NNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 431 ~~g~~~~A~~l~~~m~~ 447 (880)
+.|++++|..++.....
T Consensus 441 r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 441 RSGDILGARSLLNAAKS 457 (478)
T ss_pred hcCchHHHHHHHHHhhh
Confidence 77788877777777655
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-06 Score=98.56 Aligned_cols=247 Identities=17% Similarity=0.174 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCC---CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC
Q 002795 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRD---LKSRF-VYTKLLAILGKAGRPHEALRIFNLMLED-----CNL 260 (880)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~---~~d~~-~~~~Ll~~~~~~g~~~~A~~lf~~m~~~-----~g~ 260 (880)
..++..+..+|...|+++.|..++++.++.-.+.. .+.+. ..+.+...|...+++.+|..+|+++... +..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 45777799999999999999999999877621111 13332 2344677889999999999999998763 122
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHH-HHHHHHHHhcCCCHHHHHHHHH
Q 002795 261 YPD-IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVV-YNAVLNACVPSHQWKGVFWVFK 338 (880)
Q Consensus 261 ~pd-~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~t-y~~ll~~~~~~g~~~~A~~l~~ 338 (880)
.|. ..+++.|..+|.+.|++++|...++...+. +.++.. ...|.+.+ ++.+...|...+++++|..+++
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I--------~~~~~~-~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q 349 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI--------YEKLLG-ASHPEVAAQLSELAAILQSMNEYEEAKKLLQ 349 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH--------HHHhhc-cChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 333 456788888999999999999988887653 222111 13344443 4455556788888888888887
Q ss_pred HHHHC---CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-------CCccHHHHHHHHHHHHhcCCHHHHH
Q 002795 339 QLRKS---GLKPS----AATYGLAMEVMLQSGKYDLVHEFFRKMAKSG-------EAIGALTYKVLVRAFWEEGKINEAV 404 (880)
Q Consensus 339 ~m~~~---g~~pd----~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g-------~~~d~~~~~~Li~~~~~~g~~~~A~ 404 (880)
...+. -+.++ ..+++.+...|...|++++|+.+|+.++... ..-....++-|...|.+.+...+|.
T Consensus 350 ~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 350 KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 65421 11122 3456667777777777777777777665431 1112345556666666666666666
Q ss_pred HHHHHHHH----CCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002795 405 AAVRNMEQ----RGV--VGTASVYYELACCLCNNGRWQDAMLVVEKI 445 (880)
Q Consensus 405 ~~~~~m~~----~g~--~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m 445 (880)
++|.+... -|+ +....+|..|...|...|+++.|..+.+..
T Consensus 430 ~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 430 QLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 66665332 121 112244555555555555555555555444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-05 Score=90.37 Aligned_cols=289 Identities=15% Similarity=0.149 Sum_probs=183.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHH
Q 002795 237 ILGKAGRPHEALRIFNLMLEDCNLYPDI-AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~~~~g~~pd~-~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ 315 (880)
.+...|++++|++.++.-... .+|. .........+.+.|+.++|..+|..+... .|+..
T Consensus 13 il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-----------------NPdn~ 72 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-----------------NPDNY 72 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------CCCcH
Confidence 346667777777777665442 3443 33445566677777777777777777764 23444
Q ss_pred HHH-HHHHHHhc-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCccHHHHH
Q 002795 316 VYN-AVLNACVP-----SHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKY-DLVHEFFRKMAKSGEAIGALTYK 388 (880)
Q Consensus 316 ty~-~ll~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~-~~A~~l~~~m~~~g~~~d~~~~~ 388 (880)
.|- .+..+... ..+.+....+|+++...- |.......+.-.+.....+ ..+..++..+..+|+|+ +++
T Consensus 73 ~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~ 147 (517)
T PF12569_consen 73 DYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFS 147 (517)
T ss_pred HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHH
Confidence 443 33333311 124566677777775432 3332222222122221122 24556666777777643 566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Q 002795 389 VLVRAFWEEGKINEAVAAVRNMEQR----G----------VVGTAS--VYYELACCLCNNGRWQDAMLVVEKIKSLRHSK 452 (880)
Q Consensus 389 ~Li~~~~~~g~~~~A~~~~~~m~~~----g----------~~p~~~--t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~ 452 (880)
.|-..|....+..-...++..+... + -.|... ++.-+...|...|++++|+.++++... ..
T Consensus 148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---ht 224 (517)
T PF12569_consen 148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HT 224 (517)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cC
Confidence 6666666555555555555555432 1 123332 445567778899999999999998887 33
Q ss_pred CC-HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCC
Q 002795 453 PL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGA 531 (880)
Q Consensus 453 p~-~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~ 531 (880)
|+ ...|..-...+-+.|++.+|...++....-..-|...-+-.+..+.++|++++|.+++....+.+
T Consensus 225 Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~------------ 292 (517)
T PF12569_consen 225 PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED------------ 292 (517)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC------------
Confidence 54 34577777888999999999999999988666788888888899999999999999999887765
Q ss_pred CCCC--CHH----HH--HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002795 532 PLKP--DEY----TY--SSMLEASATAHQWEYFEYVYKGMALS 566 (880)
Q Consensus 532 ~~~P--d~~----t~--~~ll~a~~~~~~~~~A~~l~~~m~~~ 566 (880)
..| |.. .| .-...+|.+.|++..|+.-|..+.+.
T Consensus 293 -~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 293 -VDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred -CCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 223 211 22 34456778889988888777666543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.00015 Score=80.22 Aligned_cols=441 Identities=14% Similarity=0.133 Sum_probs=238.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 002795 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV 270 (880)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~l 270 (880)
..+.+=++.+...|++++|.+....++...+ .+..++..-+-++.+.+++++|+.+.+.-.. +..+..-+---
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~p----dd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEK 85 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVP----DDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEK 85 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCC----CcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHH
Confidence 3455566777888899999999998886553 4566777777788889999999865554322 11111111112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC-CH
Q 002795 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP-SA 349 (880)
Q Consensus 271 l~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p-d~ 349 (880)
..+..+.+..++|+..+.-. .+.+..+...-...|-+.|++++|+.+|+.+.+.+..- +.
T Consensus 86 AYc~Yrlnk~Dealk~~~~~-------------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGL-------------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred HHHHHHcccHHHHHHHHhcc-------------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 33344678889998888822 22233344455556788899999999999998775431 11
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCC-------CCCCH
Q 002795 350 ATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVL---VRAFWEEGKINEAVAAVRNMEQRG-------VVGTA 419 (880)
Q Consensus 350 ~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~L---i~~~~~~g~~~~A~~~~~~m~~~g-------~~p~~ 419 (880)
..-..++.+-.. -.+. .+......| ..+|..+ ...+...|++.+|+++++...+.+ -..+.
T Consensus 147 ~~r~nl~a~~a~----l~~~----~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eE 217 (652)
T KOG2376|consen 147 ERRANLLAVAAA----LQVQ----LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEE 217 (652)
T ss_pred HHHHHHHHHHHh----hhHH----HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchh
Confidence 111222221111 0111 122222222 2233333 344567899999999998873221 11111
Q ss_pred H-------HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHH----HHHHHHHHHHhCCCHH-HHHHHHHHHhhC---
Q 002795 420 S-------VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI----TFTGLIISSMDGGHID-DCISIFQHMKDH--- 484 (880)
Q Consensus 420 ~-------t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~----t~~~ll~a~~~~g~~~-~A~~i~~~m~~~--- 484 (880)
. .---|.-.+-..|+..+|..++..... ...+|.. .-|.|+..-....-.+ .+...++.....
T Consensus 218 eie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~--~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~ 295 (652)
T KOG2376|consen 218 EIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK--RNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAE 295 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH--hcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHH
Confidence 1 111244455688999999999888876 2334442 2334443322222122 222233222210
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc--CCH
Q 002795 485 ---------CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA--HQW 553 (880)
Q Consensus 485 ---------~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~--~~~ 553 (880)
....+..-+.++..|. +..+.+.++-..... ..|. ..+.+++..+... ..+
T Consensus 296 ~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~---------------~~p~-~~~~~ll~~~t~~~~~~~ 357 (652)
T KOG2376|consen 296 FLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPG---------------MSPE-SLFPILLQEATKVREKKH 357 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCc---------------cCch-HHHHHHHHHHHHHHHHHH
Confidence 0111122223333333 333445444443322 2233 4455555555443 236
Q ss_pred HHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHHhCCH
Q 002795 554 EYFEYVYKGMALSGCQLD--QTKHAWLLVEASRAGKCHLLEHAFD--------SLLEAGEIPHPLFFTEMLIQAIVQSNY 623 (880)
Q Consensus 554 ~~A~~l~~~m~~~g~~pd--~~~~~~ll~~~~~~G~~~~A~~~~~--------~m~~~g~~p~~~~~~~ll~~~~~~g~~ 623 (880)
..+.+++....+. .|. ..+.-..+......|+++.|.+++. .+.+.+..|-.+.+ ++..+++.++-
T Consensus 358 ~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~a--iv~l~~~~~~~ 433 (652)
T KOG2376|consen 358 KKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGA--IVALYYKIKDN 433 (652)
T ss_pred hhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHH--HHHHHHhccCC
Confidence 6677777666543 333 3344444555678999999999999 66666666654444 56666666554
Q ss_pred HHHHHHHHHhhh--CCCccCHHHHHHHHH----HhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHhcc
Q 002795 624 EKAVALINAMAY--APFHITERQWTELFE----SNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSE 694 (880)
Q Consensus 624 ~~A~~l~~~m~~--~~~~p~~~~~~~ll~----a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g 694 (880)
+-|..++..... ..-.+......+++. --...|..+.+..+++++.+.++. ....+..++-+|++..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~----d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN----DTDLLVQLVTAYARLD 506 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc----hHHHHHHHHHHHHhcC
Confidence 444444444320 000112223333332 223458999999999999997765 2333555677776554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.9e-07 Score=100.06 Aligned_cols=250 Identities=14% Similarity=0.135 Sum_probs=183.0
Q ss_pred cHHHHHHHHHHHHcCCChHHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHhCcCCC---
Q 002795 154 EAEAIRVLVDRLSEREMTAKNWKFVRIMNQS-----GL-MFTEGQ-MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKR--- 223 (880)
Q Consensus 154 ~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~-----g~-~~~~~~-~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~--- 223 (880)
-..+...+...+...|+++.|..+++...+. |. .|...+ .+.+...|...+++.+|..+|+.++..-...
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3455666889999999999999999887764 21 234433 3447788899999999999999887653321
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCch
Q 002795 224 -DLKSRFVYTKLLAILGKAGRPHEALRIFNLMLED----CNL-YPDIA-AYHSVAVTLGQVGLLKELVKLIERMRQKPSK 296 (880)
Q Consensus 224 -~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~----~g~-~pd~~-t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~ 296 (880)
...-..+++.|..+|.+.|++++|...++...+- .+. .|.+. .++.+...|+..+.+++|..++....+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i--- 354 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI--- 354 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH---
Confidence 1122457888888999999999988887776542 122 23333 3566777888999999999999876543
Q ss_pred hHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHHcCChHHHH
Q 002795 297 RIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS-----G-LKP-SAATYGLAMEVMLQSGKYDLVH 369 (880)
Q Consensus 297 ~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~-----g-~~p-d~~t~~~ll~a~~~~g~~~~A~ 369 (880)
|...+.+-..--.-+|+.|-..|...|++++|.++|++.... | ..+ ....++.+...|.+.+.+..|.
T Consensus 355 -----~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 355 -----YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred -----HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 223333322233457999999999999999999999998632 1 122 2456788888999999999999
Q ss_pred HHHHHHHH----cC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002795 370 EFFRKMAK----SG--EAIGALTYKVLVRAFWEEGKINEAVAAVRNME 411 (880)
Q Consensus 370 ~l~~~m~~----~g--~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 411 (880)
++|.+... .| .+-...+|..|...|...|+++.|.++.+...
T Consensus 430 ~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 430 QLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99887543 23 23346889999999999999999999988876
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.00021 Score=81.32 Aligned_cols=409 Identities=12% Similarity=0.049 Sum_probs=241.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhc
Q 002795 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (880)
Q Consensus 226 ~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~ 305 (880)
.|..+|..|.-++.++|+++.+.+.|++... +..-....|+.+...|...|.-..|..+++.-....
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~----------- 387 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS----------- 387 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc-----------
Confidence 5677888888888999999999999998876 455667789999999999999888999888776542
Q ss_pred CCCCCCCC-HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHC--CCC--CCHHHHHHHHHHHHHc-----------CChHHH
Q 002795 306 WDPVLEPD-LVVYNAVLNACV-PSHQWKGVFWVFKQLRKS--GLK--PSAATYGLAMEVMLQS-----------GKYDLV 368 (880)
Q Consensus 306 f~~~~~pd-~~ty~~ll~~~~-~~g~~~~A~~l~~~m~~~--g~~--pd~~t~~~ll~a~~~~-----------g~~~~A 368 (880)
..|+ ...+-..-..|. +.+..++++.+-.+.... +.. .....|-.+.-+|... ....++
T Consensus 388 ----~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ks 463 (799)
T KOG4162|consen 388 ----EQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKS 463 (799)
T ss_pred ----cCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHH
Confidence 2343 333333333344 456677777776666541 111 1223344444344311 123467
Q ss_pred HHHHHHHHHcC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002795 369 HEFFRKMAKSG-EAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 369 ~~l~~~m~~~g-~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
.+.+++.++.+ ..|++..|- ---|+..++++.|.+..++..+-+...+...|..|.-.+...+++.+|+.+.+....
T Consensus 464 lqale~av~~d~~dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 464 LQALEEAVQFDPTDPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHHHHHHhcCCCCchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 77777777765 344444443 334667789999999999999887777888899999889999999999999888766
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHh----------------------hC------CCCC-HHHHHHHHHH
Q 002795 448 LRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK----------------------DH------CEPN-IGTVNAMLKV 498 (880)
Q Consensus 448 ~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~----------------------~~------~~pd-~~~~~~Li~~ 498 (880)
..+.+.. ....-+..-..-++.+++......+. .+ .+.+ +.++..+..
T Consensus 542 E~~~N~~--l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~- 618 (799)
T KOG4162|consen 542 EFGDNHV--LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS- 618 (799)
T ss_pred Hhhhhhh--hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH-
Confidence 2222110 00000011111222222222211111 00 0111 122222211
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 002795 499 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD------EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ 572 (880)
Q Consensus 499 ~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd------~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~ 572 (880)
.... +...+..-.. |.. .+. .-.|+ ...|......+...++.++|...+.+..+. .....
T Consensus 619 l~a~-~~~~~~se~~-Lp~-----s~~------~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~ 684 (799)
T KOG4162|consen 619 LVAS-QLKSAGSELK-LPS-----STV------LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSA 684 (799)
T ss_pred HHHh-hhhhcccccc-cCc-----ccc------cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhH
Confidence 1110 0000000000 111 000 11233 334556666677778878877666666542 12235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHhCCHHHHHH--HHHHhhhCCCccCHHHHHHHH
Q 002795 573 TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEMLIQAIVQSNYEKAVA--LINAMAYAPFHITERQWTELF 649 (880)
Q Consensus 573 ~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~--l~~~m~~~~~~p~~~~~~~ll 649 (880)
..|......+-..|..++|.+.|...... .|+ +.+.+++...+.+.|+..-|.. ++..+.+-+ .-+...|-.+-
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG 761 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLG 761 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 55665556677788888888888876663 343 4456666677777777555555 777776433 33566787777
Q ss_pred HHhhhccCHHHHHHHHHHHHhCCC
Q 002795 650 ESNEDRISRDKLEKLLNALCNCNA 673 (880)
Q Consensus 650 ~a~~~~~~~~~a~~l~~~~~~~~~ 673 (880)
......|+.+.|...|....+...
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhhcc
Confidence 788888888888888887766543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.0002 Score=75.78 Aligned_cols=283 Identities=12% Similarity=0.047 Sum_probs=151.7
Q ss_pred CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHH
Q 002795 328 HQWKGVFWVFKQLRKS-GLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIG-ALTYKVLVRAFWEEGKINEAVA 405 (880)
Q Consensus 328 g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d-~~~~~~Li~~~~~~g~~~~A~~ 405 (880)
++...|...+-.+... -++-|+.....+...+...|+.++|...|++..-.+ |+ +.........+.+.|+.++...
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHH
Confidence 4444444443333322 233456666666677777777777777777665543 22 2222222233345666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 002795 406 AVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-ITFTGLIISSMDGGHIDDCISIFQHMKDH 484 (880)
Q Consensus 406 ~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~-~t~~~ll~a~~~~g~~~~A~~i~~~m~~~ 484 (880)
+...+....-. +...|-.-.+.+....++..|+.+-.+..+ ..|+. ..+-.--..+...+++++|.-.|.....-
T Consensus 288 L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~---~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 288 LMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCID---SEPRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhc---cCcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 66555543211 112233333344455666667666666554 22222 22222224455667777777777766654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHH-HHHHH-cCCHHHHHHHHHH
Q 002795 485 CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSML-EASAT-AHQWEYFEYVYKG 562 (880)
Q Consensus 485 ~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll-~a~~~-~~~~~~A~~l~~~ 562 (880)
-+-+..+|.-|+..|...|++.+|.-+-+...+. +.-+..+.+.+. ..|.- ...-++|..+++.
T Consensus 364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--------------~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--------------FQNSARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--------------hhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 4556677777777777777777776666655552 223444444431 22222 1334566666655
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 002795 563 MALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 634 (880)
Q Consensus 563 m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 634 (880)
-.+ +.|+ ....+.+...|...|..+++..+++.... ..||....+.+...+...+.+.+|++.|....
T Consensus 430 ~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 430 SLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred hhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 443 3454 33444455556667777777777766554 24666666666666666666777777666655
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00077 Score=74.71 Aligned_cols=451 Identities=13% Similarity=0.096 Sum_probs=262.1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH-
Q 002795 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL- 234 (880)
Q Consensus 156 ~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~L- 234 (880)
..+-.=++.....+.+++|+.....+...+ +.+...+..=+-++.+.+++++|+.+.+.-. -..+++..
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~---------~~~~~~~~~ 82 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNG---------ALLVINSFF 82 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---------hhhhcchhh
Confidence 344444567777889999999999998776 6677788888888889999999997665321 11122222
Q ss_pred -HHHH--HHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCC
Q 002795 235 -LAIL--GKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE 311 (880)
Q Consensus 235 -l~~~--~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~ 311 (880)
=.+| .+.+..++|+..++-.... |..+...-...+.+.|++++|+.+|..+.+... ..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~~~~~-----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~--------------dd 143 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKGLDRL-----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNS--------------DD 143 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhccccc-----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------------ch
Confidence 3344 4678999999999844432 444666666778899999999999999977641 11
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHHcCChHHHHHHHHHHHHcCC--------
Q 002795 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAME---VMLQSGKYDLVHEFFRKMAKSGE-------- 380 (880)
Q Consensus 312 pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~---a~~~~g~~~~A~~l~~~m~~~g~-------- 380 (880)
-+...-..++.+-. +... ..|......| ..+|..+.+ .+...|++.+|++++....+.+.
T Consensus 144 ~d~~~r~nl~a~~a-------~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~ 214 (652)
T KOG2376|consen 144 QDEERRANLLAVAA-------ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDT 214 (652)
T ss_pred HHHHHHHHHHHHHH-------hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhccccc
Confidence 12222222222211 1111 1233333344 234444333 34577889999888888733210
Q ss_pred -----CccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhCCCHH-HHHHHHHHHHhcC
Q 002795 381 -----AIGA-LTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTAS----VYYELACCLCNNGRWQ-DAMLVVEKIKSLR 449 (880)
Q Consensus 381 -----~~d~-~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~Li~~~~~~g~~~-~A~~l~~~m~~~~ 449 (880)
.-+. .+---|..++-..|+.++|..+|.....++.. |.. .-|.|+..-....-++ .++..++......
T Consensus 215 ~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l 293 (652)
T KOG2376|consen 215 NEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKL 293 (652)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHh
Confidence 0011 11223455667789999999999999888754 332 1222322211111111 2233333222100
Q ss_pred ---------CCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 002795 450 ---------HSKPLEITF-TGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR--NDMFSKAKELFEETTR 517 (880)
Q Consensus 450 ---------~~~p~~~t~-~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~--~g~~~~A~~lf~~m~~ 517 (880)
..+-..+.. +.++..| .+..+.+.++-..+.. ..|. ..+.+++..+.+ .....+|.+++.....
T Consensus 294 ~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~-~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~ 369 (652)
T KOG2376|consen 294 AEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPG-MSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD 369 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc-cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 000011111 2222222 2334444444333332 2233 334444444433 2346778888887766
Q ss_pred cCCCCccccCCCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002795 518 ANSSGYTFLSGDGAPLKPD--EYTYSSMLEASATAHQWEYFEYVYK--------GMALSGCQLDQTKHAWLLVEASRAGK 587 (880)
Q Consensus 518 ~g~~~~~~l~~~~~~~~Pd--~~t~~~ll~a~~~~~~~~~A~~l~~--------~m~~~g~~pd~~~~~~ll~~~~~~G~ 587 (880)
.. |+ ....-.++......|+++.|.+++. .+.+.+..|- +..+++..|.+.++
T Consensus 370 ~~---------------p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 370 GH---------------PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKD 432 (652)
T ss_pred cC---------------CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccC
Confidence 43 54 3455566667778899999999999 5555455544 44566777888888
Q ss_pred HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHH
Q 002795 588 CHLLEHAFDSLLEA------GEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKL 661 (880)
Q Consensus 588 ~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a 661 (880)
.+.|..+++....- +-.--..++..+..--.++|+-++|..+++++... .++|..+...++.++.. -+++.|
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~-~d~eka 510 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYAR-LDPEKA 510 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHh-cCHHHH
Confidence 88888888766531 11111223333444445669999999999999853 36678888888888764 577888
Q ss_pred HHHHHHH
Q 002795 662 EKLLNAL 668 (880)
Q Consensus 662 ~~l~~~~ 668 (880)
..+-+++
T Consensus 511 ~~l~k~L 517 (652)
T KOG2376|consen 511 ESLSKKL 517 (652)
T ss_pred HHHhhcC
Confidence 8877764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.9e-06 Score=89.64 Aligned_cols=223 Identities=17% Similarity=0.048 Sum_probs=150.5
Q ss_pred HHcCCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHc
Q 002795 165 LSEREMTAKNWKFVRIMNQSG-LMFT--EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKA 241 (880)
Q Consensus 165 l~~~~~~~~A~~l~~~m~~~g-~~~~--~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~ 241 (880)
+...+..+.++.-+.++.... ..|+ ...|..+...+...|+++.|...|+.+++..+ .+..+|+.+...+...
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P----~~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP----DMADAYNYLGIYLTQA 111 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHC
Confidence 333455667777777777532 1122 34577777788889999999999998887654 5678899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHH
Q 002795 242 GRPHEALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAV 320 (880)
Q Consensus 242 g~~~~A~~lf~~m~~~~g~~p-d~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~l 320 (880)
|++++|...|+...+. .| +..+|..+..++...|++++|.+.|+...+. .|+.......
T Consensus 112 g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----------------~P~~~~~~~~ 171 (296)
T PRK11189 112 GNFDAAYEAFDSVLEL---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----------------DPNDPYRALW 171 (296)
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------CCCCHHHHHH
Confidence 9999999999998873 44 4677888888888899999999999988874 3332222222
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---C---CccHHHHHHHHHHH
Q 002795 321 LNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSG---E---AIGALTYKVLVRAF 394 (880)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g---~---~~d~~~~~~Li~~~ 394 (880)
...+...++.++|...|.+.... ..|+...+ .......|++..+ ..+..+.+.- . +....+|..+...|
T Consensus 172 ~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~ 246 (296)
T PRK11189 172 LYLAESKLDPKQAKENLKQRYEK-LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYY 246 (296)
T ss_pred HHHHHccCCHHHHHHHHHHHHhh-CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 33345567889999998765533 23332221 2223345665544 3444444221 0 11245788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC
Q 002795 395 WEEGKINEAVAAVRNMEQRGVV 416 (880)
Q Consensus 395 ~~~g~~~~A~~~~~~m~~~g~~ 416 (880)
.+.|++++|+..|++....++.
T Consensus 247 ~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 247 LSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCc
Confidence 8889999999999888877643
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00057 Score=72.41 Aligned_cols=315 Identities=9% Similarity=-0.008 Sum_probs=185.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002795 340 LRKSGLKPSAATYGLAMEVMLQ--SGKYDLVHEFFRKMAKSG-EAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVV 416 (880)
Q Consensus 340 m~~~g~~pd~~t~~~ll~a~~~--~g~~~~A~~l~~~m~~~g-~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~ 416 (880)
|....+.|+..+...-+.+++. .++...+.+.+-.+.... ++-|+.....+...+...|+.++|+..|+.....++-
T Consensus 185 m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy 264 (564)
T KOG1174|consen 185 MHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD 264 (564)
T ss_pred hhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh
Confidence 3333445555555555555433 344444555554444333 5566777778888888888888888888877655431
Q ss_pred C--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHH
Q 002795 417 G--TASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNA 494 (880)
Q Consensus 417 p--~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~ 494 (880)
. ....|..| +.+.|++++...+...+.... .-....|-.-........++..|..+-++.....+.++..|-.
T Consensus 265 ~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alil 339 (564)
T KOG1174|consen 265 NVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALIL 339 (564)
T ss_pred hhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHh
Confidence 0 11123222 456777777777766665511 1111122222223344566777777777666644555666655
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 002795 495 MLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT 573 (880)
Q Consensus 495 Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~ 573 (880)
-...+...|+.++|.-.|+.... +.| +..+|.-|+..|...|...+|..+-+...+. +.-+..
T Consensus 340 KG~lL~~~~R~~~A~IaFR~Aq~---------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~ 403 (564)
T KOG1174|consen 340 KGRLLIALERHTQAVIAFRTAQM---------------LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSAR 403 (564)
T ss_pred ccHHHHhccchHHHHHHHHHHHh---------------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchh
Confidence 55667777888888888887776 445 6678888888888888888877766655432 233344
Q ss_pred HHHHHH-HHHH-HcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHH
Q 002795 574 KHAWLL-VEAS-RAGKCHLLEHAFDSLLEAGEIPHPLFFTE-MLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFE 650 (880)
Q Consensus 574 ~~~~ll-~~~~-~~G~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~ 650 (880)
+.+.+. ..|. ..-.-++|..+++.-.. +.|+..--.. +...+...|..+.++.++++.. ...||...-..|-.
T Consensus 404 ~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L--~~~~D~~LH~~Lgd 479 (564)
T KOG1174|consen 404 SLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL--IIFPDVNLHNHLGD 479 (564)
T ss_pred hhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHH--hhccccHHHHHHHH
Confidence 443331 2222 22334667777776554 3455443332 3334444577888888888776 45677776666666
Q ss_pred HhhhccCHHHHHHHHHHHHhCCCCCChhhH
Q 002795 651 SNEDRISRDKLEKLLNALCNCNAASSEITV 680 (880)
Q Consensus 651 a~~~~~~~~~a~~l~~~~~~~~~~p~~~~~ 680 (880)
-......+..+...+......++. +.-+.
T Consensus 480 ~~~A~Ne~Q~am~~y~~ALr~dP~-~~~sl 508 (564)
T KOG1174|consen 480 IMRAQNEPQKAMEYYYKALRQDPK-SKRTL 508 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcc-chHHH
Confidence 666677777788888777777765 44333
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.8e-05 Score=83.34 Aligned_cols=306 Identities=12% Similarity=0.020 Sum_probs=162.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 002795 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (880)
Q Consensus 192 ~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll 271 (880)
.|..+...+...|+.+.+...+.......+... ............+...|++++|..++++..+. .+.|...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~ 83 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARA-TERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-h
Confidence 344444444455666665555555544333221 11122222233455667778888777777663 2333434432 1
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC
Q 002795 272 VTLGQ----VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (880)
Q Consensus 272 ~~~~~----~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (880)
..+.. .+....+.+.+... .+ ..+.....+..+...+...|++++|...+++..+.. +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~--~~--------------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~ 146 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW--AP--------------ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PD 146 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc--Cc--------------CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC
Confidence 12222 33444444444331 11 022233344455556777888888888888877653 22
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CccH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-
Q 002795 348 SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGE-AIGA--LTYKVLVRAFWEEGKINEAVAAVRNMEQRGV-VGTASVY- 422 (880)
Q Consensus 348 d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~-~~d~--~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~- 422 (880)
+...+..+..++...|++++|..++++...... .++. ..|..+...+...|++++|..+|++...... .+.....
T Consensus 147 ~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~ 226 (355)
T cd05804 147 DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLL 226 (355)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHh
Confidence 455666777777788888888888877776531 1222 3455677778888888888888888754332 1111111
Q ss_pred H--HHHHHHHhCCCHHHHHHH--HHHHHhcC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC---------C
Q 002795 423 Y--ELACCLCNNGRWQDAMLV--VEKIKSLR-HSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEP---------N 488 (880)
Q Consensus 423 ~--~Li~~~~~~g~~~~A~~l--~~~m~~~~-~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~p---------d 488 (880)
+ .++.-+...|....+..+ +....... ..............++...|+.+.|..+++.+...... .
T Consensus 227 ~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 306 (355)
T cd05804 227 DAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARD 306 (355)
T ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHh
Confidence 1 223333344433322222 11111101 00111122234566677888899999999888763111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 489 IGTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 489 ~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
+...-...-++...|+.++|.+++......
T Consensus 307 ~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 307 VGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 222222333455789999999998887764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.5e-05 Score=82.60 Aligned_cols=216 Identities=9% Similarity=0.111 Sum_probs=144.0
Q ss_pred HHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 002795 323 ACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINE 402 (880)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~ 402 (880)
-+...|+++.|..-|-+... ....+.+......+.+|..+++.+..... -..-|.-+...|+..|+++.
T Consensus 715 hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHH
Confidence 34456667766665554321 23345666777888889999888877642 23456677788889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 002795 403 AVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK 482 (880)
Q Consensus 403 A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~ 482 (880)
|.++|-+. + .++-.|..|.+.|+|.+|.++-.+... .......|.+-..-.-+.|++.+|.++|-.+.
T Consensus 784 ae~lf~e~---~------~~~dai~my~k~~kw~da~kla~e~~~---~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 784 AEELFTEA---D------LFKDAIDMYGKAGKWEDAFKLAEECHG---PEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHHHhc---c------hhHHHHHHHhccccHHHHHHHHHHhcC---chhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 99888653 2 255667788999999988887666542 22233345444555667788888888876665
Q ss_pred hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 002795 483 DHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD--EYTYSSMLEASATAHQWEYFEYVY 560 (880)
Q Consensus 483 ~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd--~~t~~~ll~a~~~~~~~~~A~~l~ 560 (880)
. |+ .-|.+|-+.|..+..+++..+-. |+ ..|-..+..-+-..|++..|.+-|
T Consensus 852 ~---p~-----~aiqmydk~~~~ddmirlv~k~h------------------~d~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 852 E---PD-----KAIQMYDKHGLDDDMIRLVEKHH------------------GDHLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred C---ch-----HHHHHHHhhCcchHHHHHHHHhC------------------hhhhhHHHHHHHHHHHhccChhHHHHHH
Confidence 4 55 34778888888888888876632 33 235555666666778888887766
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002795 561 KGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFD 596 (880)
Q Consensus 561 ~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~ 596 (880)
-+.- -|.+.+++|-.++.+++|.++-.
T Consensus 906 lea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 906 LEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred Hhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 4432 25566677777777777766543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00011 Score=83.57 Aligned_cols=292 Identities=9% Similarity=-0.064 Sum_probs=157.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHH
Q 002795 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKV 389 (880)
Q Consensus 310 ~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~ 389 (880)
..|++..|-++- |+..++...|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+.....- +.|......
T Consensus 476 ~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~ 552 (799)
T KOG4162|consen 476 TDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDG 552 (799)
T ss_pred CCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchh
Confidence 445554444443 44456677777777777666545566666666666666777777777776655431 122222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHH--
Q 002795 390 LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-EITFTGLIISSM-- 466 (880)
Q Consensus 390 Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~a~~-- 466 (880)
-+..-...++.++|+.....+..- |... .+.-+.+.-...++....+.-......+ ..++..+..-..
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~--------we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLAL--------WEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHH--------HHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 222223345555555555544421 0000 0000111111222222222211110111 122222222111
Q ss_pred -hCCCHHHHHHHHHHHhhCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHH
Q 002795 467 -DGGHIDDCISIFQHMKDHCEPN------IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEY 538 (880)
Q Consensus 467 -~~g~~~~A~~i~~~m~~~~~pd------~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~P-d~~ 538 (880)
+.-..+.....+... -.|+ ...|......+.+.+..++|...+.+.... .| ...
T Consensus 624 ~~~~~se~~Lp~s~~~---~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~---------------~~l~~~ 685 (799)
T KOG4162|consen 624 LKSAGSELKLPSSTVL---PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI---------------DPLSAS 685 (799)
T ss_pred hhhcccccccCccccc---CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc---------------chhhHH
Confidence 111111111111111 1122 345666677778888888888777777663 34 455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHH
Q 002795 539 TYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEH--AFDSLLEAGEIPHPLFFTEMLI 615 (880)
Q Consensus 539 t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~--~~~~m~~~g~~p~~~~~~~ll~ 615 (880)
.|......+...|.+++|.+.|..... +.|+ +...+++..++.+.|+...|.. ++..+.+.+ .-++..|..+..
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~ 762 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGE 762 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 666666677777888888888877664 5676 5667778788888887777776 777777755 235567777777
Q ss_pred HHHHhCCHHHHHHHHHHhh
Q 002795 616 QAIVQSNYEKAVALINAMA 634 (880)
Q Consensus 616 ~~~~~g~~~~A~~l~~~m~ 634 (880)
.+-+.|+.+.|.+.|....
T Consensus 763 v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHccchHHHHHHHHHHH
Confidence 7777788888888888764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-05 Score=85.50 Aligned_cols=152 Identities=11% Similarity=-0.014 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002795 205 SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELV 284 (880)
Q Consensus 205 ~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~ 284 (880)
..+.+..-+..++...+.........|..+...|...|+.++|...|++..+. -+.+...|+.+...+...|++++|.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44555555555554322211122344556666666666666666666666652 2234556666666666666666666
Q ss_pred HHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002795 285 KLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGK 364 (880)
Q Consensus 285 ~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 364 (880)
..|+...+. .+-+..+|..+..++...|++++|+..|+...+. .|+..........+...++
T Consensus 119 ~~~~~Al~l----------------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~ 180 (296)
T PRK11189 119 EAFDSVLEL----------------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLD 180 (296)
T ss_pred HHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCC
Confidence 666666653 2334455555555666666666666666666553 2322211111222234455
Q ss_pred hHHHHHHHHHHH
Q 002795 365 YDLVHEFFRKMA 376 (880)
Q Consensus 365 ~~~A~~l~~~m~ 376 (880)
.++|...|.+..
T Consensus 181 ~~~A~~~l~~~~ 192 (296)
T PRK11189 181 PKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHH
Confidence 666666665443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00014 Score=80.85 Aligned_cols=272 Identities=13% Similarity=0.060 Sum_probs=175.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhc
Q 002795 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA-YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (880)
Q Consensus 227 d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t-~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~ 305 (880)
....|..+...+...|+.+.+...+....+.....++... .......+...|++++|..++++..+.
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------ 72 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD------------ 72 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Confidence 3556777777788888898888777776654222233222 222334567789999999999998875
Q ss_pred CCCCCCCCHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 002795 306 WDPVLEPDLVVYNAVLNACV----PSHQWKGVFWVFKQLRKSGLKPS-AATYGLAMEVMLQSGKYDLVHEFFRKMAKSGE 380 (880)
Q Consensus 306 f~~~~~pd~~ty~~ll~~~~----~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~ 380 (880)
.+.|...++. ...+. ..+....+...+.. .....|+ ......+...+...|++++|...+++..+..
T Consensus 73 ----~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~- 144 (355)
T cd05804 73 ----YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN- 144 (355)
T ss_pred ----CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 3445555553 22222 24555555555544 2223343 3444556677889999999999999999976
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHH
Q 002795 381 AIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVV-GTA--SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT 457 (880)
Q Consensus 381 ~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~--~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t 457 (880)
+.+...+..+...|...|++++|..++++....... |+. ..|..+...+...|++++|..++++........+....
T Consensus 145 p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~ 224 (355)
T cd05804 145 PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALD 224 (355)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHH
Confidence 556778889999999999999999999998875432 222 34556888899999999999999998652221222222
Q ss_pred H-H--HHHHHHHhCCCHHHHHHH---HHHHhhCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 458 F-T--GLIISSMDGGHIDDCISI---FQHMKDHCEPN--IGTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 458 ~-~--~ll~a~~~~g~~~~A~~i---~~~m~~~~~pd--~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
. + .++.-+...|....+.+. ........+.. .........++...|+.+.|..++..+...
T Consensus 225 ~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 225 LLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1 1 333334444544333333 22211111111 222235667778899999999999998774
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-05 Score=77.60 Aligned_cols=200 Identities=13% Similarity=0.034 Sum_probs=125.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHH
Q 002795 157 AIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLA 236 (880)
Q Consensus 157 ~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~ 236 (880)
....|.-.+...|++..|..-++..++.. +.+..++..+...|.+.|..+.|.+.|+.+++..+ .+-.+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p----~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP----NNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC----CccchhhhhhH
Confidence 34455556666777777777777776665 45556666666777777777777777777666544 33446666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHH
Q 002795 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVV 316 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~t 316 (880)
.+|..|++++|...|++....+...--..||..+.-+..+.|+++.|...|.+..+. .+-...+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~----------------dp~~~~~ 175 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL----------------DPQFPPA 175 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh----------------CcCCChH
Confidence 667777777777777776665333334556666666666677777777777766664 2333444
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 002795 317 YNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKS 378 (880)
Q Consensus 317 y~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~ 378 (880)
.-.+.....+.|++-.|..+++.....+. ++..+.-..|..-...|+-+.+.+.=.++.+.
T Consensus 176 ~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 176 LLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 55555666666777777666666665544 66666666666666666666665555555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00074 Score=78.50 Aligned_cols=339 Identities=15% Similarity=0.173 Sum_probs=193.8
Q ss_pred hhhhhhHHhHHHHhh--hhhhccchhhhHHhhhcccccc----CCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 002795 111 ENLRELKEMFEKDLN--WVLDDDVQLGSDYFAKNVEWHP----EKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQS 184 (880)
Q Consensus 111 e~l~~l~e~~~~~l~--~~~~~~~~~a~~~f~~~~~~~~----~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~ 184 (880)
+=..+|-|.+++++. +++.++....-..+-..+.... ....+.+....-.+......++.+++|..+|+...
T Consensus 998 dLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~-- 1075 (1666)
T KOG0985|consen 998 DLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD-- 1075 (1666)
T ss_pred CCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc--
Confidence 334456667776433 4555555544333323333110 00011111111233445556677888888887752
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCH
Q 002795 185 GLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI 264 (880)
Q Consensus 185 g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~ 264 (880)
.+......|+.- -++++.|.+.-+.+ ..+.+|+.+..+-.+.|.+.+|++-|-+. -|+
T Consensus 1076 ---~n~~A~~VLie~---i~~ldRA~efAe~~---------n~p~vWsqlakAQL~~~~v~dAieSyika-------dDp 1133 (1666)
T KOG0985|consen 1076 ---MNVSAIQVLIEN---IGSLDRAYEFAERC---------NEPAVWSQLAKAQLQGGLVKDAIESYIKA-------DDP 1133 (1666)
T ss_pred ---ccHHHHHHHHHH---hhhHHHHHHHHHhh---------CChHHHHHHHHHHHhcCchHHHHHHHHhc-------CCc
Confidence 345555555553 36678888777755 34568999999999999999999877553 277
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 002795 265 AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344 (880)
Q Consensus 265 ~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g 344 (880)
..|.-++....+.|.+++-.+.+...++.. -+|.+. +.||-+|++.++..+-.+++
T Consensus 1134 s~y~eVi~~a~~~~~~edLv~yL~MaRkk~---------------~E~~id--~eLi~AyAkt~rl~elE~fi------- 1189 (1666)
T KOG0985|consen 1134 SNYLEVIDVASRTGKYEDLVKYLLMARKKV---------------REPYID--SELIFAYAKTNRLTELEEFI------- 1189 (1666)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhh---------------cCccch--HHHHHHHHHhchHHHHHHHh-------
Confidence 889999999999999999999888777765 555554 37888888888887766554
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH--------------
Q 002795 345 LKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNM-------------- 410 (880)
Q Consensus 345 ~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m-------------- 410 (880)
..||......+..-|...+.++.|.-+|.. +.-|.-|...+...|++..|+..-++.
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh
Confidence 246776667777777777777777766643 233444555555555555544433221
Q ss_pred ----------HHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 002795 411 ----------EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQH 480 (880)
Q Consensus 411 ----------~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~ 480 (880)
-..++.....-...++.-|-..|.+++.+.+++.-.-.. +.....|+-|.-.|++- .+++.++.++-
T Consensus 1261 d~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE--RAHMgmfTELaiLYsky-kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1261 DKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE--RAHMGMFTELAILYSKY-KPEKMMEHLKL 1337 (1666)
T ss_pred chhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh--HHHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 112222223334456666667777776666665443211 11122344444444442 22222222222
Q ss_pred HhhC--C------CCCHHHHHHHHHHHHhcCCHHHHH
Q 002795 481 MKDH--C------EPNIGTVNAMLKVYSRNDMFSKAK 509 (880)
Q Consensus 481 m~~~--~------~pd~~~~~~Li~~~~~~g~~~~A~ 509 (880)
.-.. + .-....|+-++-.|.+-..++.|.
T Consensus 1338 FwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1338 FWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 1111 0 012445666666666655555443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.4e-05 Score=74.45 Aligned_cols=196 Identities=12% Similarity=0.071 Sum_probs=121.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 002795 353 GLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNN 432 (880)
Q Consensus 353 ~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~ 432 (880)
.-+.-.|...|++..|..-+++.++.. +.+..+|..+...|-+.|..+.|.+.|+......+. +..+.|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 334555667777777777777777664 334566667777777777777777777776665433 233345555556777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002795 433 GRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELF 512 (880)
Q Consensus 433 g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf 512 (880)
|++++|...|++........--..+|..+.-+..+.|+.+.|..+|++..+..+-...+.-.|.....+.|++..|...+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 77777777777766532222223456666666666677777777777666655555556666666666677777777776
Q ss_pred HHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002795 513 EETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMA 564 (880)
Q Consensus 513 ~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~ 564 (880)
+.....+ .++..+....|..-...|+-+.+-+.=..+.
T Consensus 197 ~~~~~~~--------------~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 197 ERYQQRG--------------GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHhcc--------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6666543 3666666666666666666666555444444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00054 Score=75.27 Aligned_cols=401 Identities=12% Similarity=0.048 Sum_probs=228.9
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC
Q 002795 163 DRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG 242 (880)
Q Consensus 163 ~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g 242 (880)
+..+..|+++.|+.+|-...... ++|...|+.-..+|+..|++.+|++=-...++..|. =.-.|+.+..++.-.|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~----w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD----WAKGYSRKGAALFGLG 84 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc----hhhHHHHhHHHHHhcc
Confidence 46678899999999999988887 678999999999999999999998887777665542 2457889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH-H------HHHHHHhCCchhHhhhhhhcCCCCCCCCHH
Q 002795 243 RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELV-K------LIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315 (880)
Q Consensus 243 ~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~-~------l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ 315 (880)
++++|+.-|.+-.+. .+-|...++-+..++ ....+. + ++..+..... .. ......
T Consensus 85 ~~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~---t~---------~~~~~~ 146 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEK--DPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPL---TN---------YSLSDP 146 (539)
T ss_pred cHHHHHHHHHHHhhc--CCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChh---hh---------hhhccH
Confidence 999999999998874 344566677777666 111111 1 1111111100 00 000111
Q ss_pred HHHHHHHHHhcC----------CCHHHHHHHHHH-----HHHCC-------CCC------------C----------HHH
Q 002795 316 VYNAVLNACVPS----------HQWKGVFWVFKQ-----LRKSG-------LKP------------S----------AAT 351 (880)
Q Consensus 316 ty~~ll~~~~~~----------g~~~~A~~l~~~-----m~~~g-------~~p------------d----------~~t 351 (880)
.|..++..+-+. ..+..|...+.. +...| ..| | ..-
T Consensus 147 ~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ 226 (539)
T KOG0548|consen 147 AYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHK 226 (539)
T ss_pred HHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhH
Confidence 223333222111 011111111110 00001 111 0 112
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------
Q 002795 352 YGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYEL------ 425 (880)
Q Consensus 352 ~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~L------ 425 (880)
+..+.++..+..++..+.+-+....... -+..-++..-.+|...|.+..+...-....+.|-. ...-|+.+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3446666777778888888888877765 45666677777888888888777776666555532 12223333
Q ss_pred -HHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCH-HHHHHHHHHHHhcC
Q 002795 426 -ACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI-GTVNAMLKVYSRND 503 (880)
Q Consensus 426 -i~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~-~~~~~Li~~~~~~g 503 (880)
..+|.+.++++.|+..|.+... ....|+..+ +....+++....+...- +.|.. .-...-...+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLt-e~Rt~~~ls---------~lk~~Ek~~k~~e~~a~-~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALT-EHRTPDLLS---------KLKEAEKALKEAERKAY-INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhh-hhcCHHHHH---------HHHHHHHHHHHHHHHHh-hChhHHHHHHHHHHHHHhcc
Confidence 3345566777888888887665 344443221 11222222222222211 11221 11111244556677
Q ss_pred CHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 002795 504 MFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVE 581 (880)
Q Consensus 504 ~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~ 581 (880)
++..|+..|.+++... | |...|....-+|.+.+.+..|+.-.+..++. .|+ ...|..=..+
T Consensus 373 dy~~Av~~YteAIkr~---------------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~a 435 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD---------------PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAA 435 (539)
T ss_pred CHHHHHHHHHHHHhcC---------------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHH
Confidence 7777777777777743 5 5667777777777777777777666655543 343 3333333334
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002795 582 ASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV 619 (880)
Q Consensus 582 ~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 619 (880)
+-...+++.|.+.|.+-.+.+ |+..-+..-+.-|..
T Consensus 436 l~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 436 LRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 445567777777777766643 554444444444444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00043 Score=77.55 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=80.0
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC
Q 002795 163 DRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG 242 (880)
Q Consensus 163 ~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g 242 (880)
.+..+...+.+|+.+++.+..... ...-|..+..-|+..|+++.|.++|-+. -.++-.|.+|.+.|
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~------------~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA------------DLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc------------chhHHHHHHHhccc
Confidence 344455667777777777766542 3345677888899999999999998643 24677888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002795 243 RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290 (880)
Q Consensus 243 ~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m 290 (880)
+++.|.++-.+... -......|-+-..-+-..|++.+|.++|-.+
T Consensus 806 kw~da~kla~e~~~---~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHG---PEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred cHHHHHHHHHHhcC---chhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 99999988777653 3345566766667777788888887776544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0014 Score=76.71 Aligned_cols=434 Identities=11% Similarity=-0.029 Sum_probs=249.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002795 170 MTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALR 249 (880)
Q Consensus 170 ~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~ 249 (880)
+...|+..|-...+.. +.=...|..|...|+..-+...|.+.|+.+.+..+ .+...+..+...|+....++.|..
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa----tdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA----TDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----hhhhhHHHHHHHhhccccHHHHHH
Confidence 3555665555554443 22345678888888877788888888888876543 567788888888888888888888
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCC
Q 002795 250 IFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQ 329 (880)
Q Consensus 250 lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~ 329 (880)
+.-...+......-...|....-.|...++...|..-|+...+. .+.|...|..+..+|...|.
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~----------------dPkD~n~W~gLGeAY~~sGr 611 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT----------------DPKDYNLWLGLGEAYPESGR 611 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC----------------CchhHHHHHHHHHHHHhcCc
Confidence 84433332000011222334444567778888888888888775 56788899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHcCChHHHHHHHHHHHHcC------CCccHHHHHHHHHHHHhcCCHH
Q 002795 330 WKGVFWVFKQLRKSGLKPSAATYGLAM--EVMLQSGKYDLVHEFFRKMAKSG------EAIGALTYKVLVRAFWEEGKIN 401 (880)
Q Consensus 330 ~~~A~~l~~~m~~~g~~pd~~t~~~ll--~a~~~~g~~~~A~~l~~~m~~~g------~~~d~~~~~~Li~~~~~~g~~~ 401 (880)
+..|+++|.+.... .|+. +|...- ..-+..|.+.++...+..++... ...-..++-.+...+.-.|-..
T Consensus 612 y~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~ 688 (1238)
T KOG1127|consen 612 YSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQK 688 (1238)
T ss_pred eehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 99999999887653 4543 333222 22367788999988888776541 1111223333333344444444
Q ss_pred HHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH---
Q 002795 402 EAVAAVRNMEQ-------RGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHI--- 471 (880)
Q Consensus 402 ~A~~~~~~m~~-------~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~--- 471 (880)
+|..+++.-.+ .....+...|-.+ .+|..+|-.... ..|+......+..-.-+.+..
T Consensus 689 kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e~---~~vn~h~l~il~~q~e~~~~l~~~ 755 (1238)
T KOG1127|consen 689 KAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQEEP---SIVNMHYLIILSKQLEKTGALKKN 755 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHHhcc---cchHHHHHHHHHHHHHhcccCcch
Confidence 45555544332 2222222223222 123344444331 134333222222212222222
Q ss_pred H---HHHHHHHHHhhCCCCCHHHHHHHHHHHHh----c----CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHH
Q 002795 472 D---DCISIFQHMKDHCEPNIGTVNAMLKVYSR----N----DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTY 540 (880)
Q Consensus 472 ~---~A~~i~~~m~~~~~pd~~~~~~Li~~~~~----~----g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~ 540 (880)
+ .+.+.+-.-. ....+..+|..|+..|.+ + .+...|+..+....+.. .-+..+|
T Consensus 756 d~l~Lg~~c~~~hl-sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~--------------ann~~~W 820 (1238)
T KOG1127|consen 756 DLLFLGYECGIAHL-SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC--------------ANNEGLW 820 (1238)
T ss_pred hHHHHHHHHhhHHH-HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh--------------hccHHHH
Confidence 2 1111111111 122345566666655544 1 23357888888887742 2355566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q 002795 541 SSMLEASATAHQWEYFEYVYKGMALSGCQL-DQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPL-FFTEMLIQAI 618 (880)
Q Consensus 541 ~~ll~a~~~~~~~~~A~~l~~~m~~~g~~p-d~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~ 618 (880)
+.|-.. ...|++.-+...|-+-.. ..| ...+|..+-..|....+++-|..+|.+.... .|+.. .|--......
T Consensus 821 naLGVl-sg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~e 895 (1238)
T KOG1127|consen 821 NALGVL-SGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPE 895 (1238)
T ss_pred HHHHHh-hccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHH
Confidence 655444 555777766665544432 333 4667777777788999999999999988774 35444 4432322333
Q ss_pred HhCCHHHHHHHHHHh----hhCCCccCHHHHHHHHHHhhhccCHHH
Q 002795 619 VQSNYEKAVALINAM----AYAPFHITERQWTELFESNEDRISRDK 660 (880)
Q Consensus 619 ~~g~~~~A~~l~~~m----~~~~~~p~~~~~~~ll~a~~~~~~~~~ 660 (880)
..|+.-++..+|..- ...|-.|+..-|.+...-....|+.+.
T Consensus 896 avG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 896 AVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred HHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 347777777777762 134445666666665555555665543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00046 Score=69.98 Aligned_cols=326 Identities=13% Similarity=0.062 Sum_probs=204.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHH-HHHH
Q 002795 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYT-KLLA 236 (880)
Q Consensus 158 ~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~-~Ll~ 236 (880)
+..++..+.+..++.+|++++..-.++. +-+...++.|...|-...++..|...++.+-... |...-|. --..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-----P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-----PELEQYRLYQAQ 86 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----hHHHHHHHHHHH
Confidence 4566777788889999999988877765 3477888888888888899999999998875433 3222221 1233
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCH
Q 002795 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTL--GQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL 314 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~--~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~ 314 (880)
.+-+.+.+..|+++...|... |+...-..-+.+. -..+++..+..++++....+ +.
T Consensus 87 SLY~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en------------------~A 144 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN------------------EA 144 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC------------------cc
Confidence 456778899999998888652 3333332223322 34577777888877775332 34
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC------------
Q 002795 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKS-GLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEA------------ 381 (880)
Q Consensus 315 ~ty~~ll~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~------------ 381 (880)
.+.+...-...+.|+++.|.+-|+...+. |.. ....|+..+ +..+.+++..|.+...+++++|+.
T Consensus 145 d~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~te 222 (459)
T KOG4340|consen 145 DGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTE 222 (459)
T ss_pred chhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceec
Confidence 44444444456889999999999988764 444 455677555 456778999999999999988752
Q ss_pred -cc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 002795 382 -IG---------------ALTYKVLVRAFWEEGKINEAVAAVRNMEQRG-VVGTASVYYELACCLCNNGRWQDAMLVVEK 444 (880)
Q Consensus 382 -~d---------------~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~ 444 (880)
|| +..+|.-...+.+.|+++.|.+.+-.|.-+. -..|+.|...+.-. -..+++.+...-+.-
T Consensus 223 giDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqF 301 (459)
T KOG4340|consen 223 GIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQF 301 (459)
T ss_pred cCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHH
Confidence 12 1123333444567788888888888886432 23455555544321 123445555555555
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002795 445 IKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH--CEPNIGTVNAMLKVYSRNDMFSKAKELFEETT 516 (880)
Q Consensus 445 m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~--~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~ 516 (880)
+... ...| ..||..++-.||+...++.|-.++.+-... --.+...|+.|=......-..++|.+-++.+.
T Consensus 302 LL~~-nPfP-~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 302 LLQQ-NPFP-PETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHhc-CCCC-hHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 5542 2222 357888888889888888888887765442 12234444433222223345566655544443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0045 Score=68.09 Aligned_cols=138 Identities=6% Similarity=0.028 Sum_probs=96.6
Q ss_pred CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHH
Q 002795 150 RWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF 229 (880)
Q Consensus 150 ~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~ 229 (880)
..+.|..+|..|++-+..+ .++++...++++...- +.+...|..-|+.-....+++....+|.+.+... .+..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-----LnlD 87 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-----LNLD 87 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----hhHh
Confidence 4667889999999998766 9999999999998654 6677888999999999999999999999887532 4567
Q ss_pred HHHHHHHHHHHc-CCH----HHHHHHHHHHHHcCCCCCCH-HHHHHHHHH---------HHhcCCHHHHHHHHHHHHhCC
Q 002795 230 VYTKLLAILGKA-GRP----HEALRIFNLMLEDCNLYPDI-AAYHSVAVT---------LGQVGLLKELVKLIERMRQKP 294 (880)
Q Consensus 230 ~~~~Ll~~~~~~-g~~----~~A~~lf~~m~~~~g~~pd~-~t~~~ll~~---------~~~~g~~~~A~~l~~~m~~~g 294 (880)
.|..-|+--.+. |.. +...+.|+-.....|..+-. ..|+.-+.. |..+.+++...++|.++...+
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 788777643332 222 23334555555554544432 234444432 334456677788888888764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00062 Score=85.85 Aligned_cols=382 Identities=11% Similarity=0.000 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH
Q 002795 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFT-EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL 234 (880)
Q Consensus 156 ~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~L 234 (880)
..+......+...|.+.+|..... ..+..+. ..........+...|++..+...++.+.... ...+.......
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~---~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~---~~~~~~l~~~~ 415 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHAL---AAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV---LLENPRLVLLQ 415 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH---HCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH---HhcCcchHHHH
Confidence 344555556666777776664333 2331111 1112222334455677777777766541110 01122233444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-----CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCC
Q 002795 235 LAILGKAGRPHEALRIFNLMLEDCNL-----YPDI--AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (880)
Q Consensus 235 l~~~~~~g~~~~A~~lf~~m~~~~g~-----~pd~--~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~ 307 (880)
...+...|++++|..++........- .|.. .....+...+...|++++|...+++.....
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------------- 482 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL------------- 482 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------------
Confidence 55566789999999999887553111 1111 112223345567899999999999876531
Q ss_pred CCCCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 002795 308 PVLEPD----LVVYNAVLNACVPSHQWKGVFWVFKQLRKS----GL-KPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKS 378 (880)
Q Consensus 308 ~~~~pd----~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~----g~-~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~ 378 (880)
...+ ...++.+...+...|++++|...+.+.... |- .+-..++..+...+...|+++.|...+++....
T Consensus 483 --~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 483 --PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred --CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112 234455666678899999999999887642 11 111234555667788899999999998876653
Q ss_pred ----CCC---ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002795 379 ----GEA---IGALTYKVLVRAFWEEGKINEAVAAVRNMEQR--GVVG--TASVYYELACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 379 ----g~~---~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~--g~~p--~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
+.. .....+..+...+...|++++|...+++.... ...+ ....+..+...+...|+++.|...+.....
T Consensus 561 ~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 561 IEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 211 12344556667778889999999998887643 1112 233444566677889999999998888754
Q ss_pred cCCCCCCHHHH-----HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 448 LRHSKPLEITF-----TGLIISSMDGGHIDDCISIFQHMKDHCEPNI----GTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 448 ~~~~~p~~~t~-----~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~----~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
..........+ ...+..+...|+.+.|...+........... ..+..+..++...|++++|..++++....
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 641 LLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 21111111111 1122344567899999998877654211111 12445667788899999999999888764
Q ss_pred CCCCccccCCCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002795 519 NSSGYTFLSGDGAPLKPD-EYTYSSMLEASATAHQWEYFEYVYKGMALSG 567 (880)
Q Consensus 519 g~~~~~~l~~~~~~~~Pd-~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g 567 (880)
.. ..+..++ ..+...+..++...|+.++|...+.+..+..
T Consensus 721 ~~---------~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 721 AR---------SLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HH---------HhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 20 0012222 2356666677778899999999988887653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-05 Score=87.91 Aligned_cols=216 Identities=17% Similarity=0.169 Sum_probs=159.5
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 002795 359 MLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA 438 (880)
Q Consensus 359 ~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A 438 (880)
+.+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+++..+.++. +....-.|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 357788888888888888775 456788888888888888888888888888877654 455566677778888888888
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHH-----------HHHHhCCCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHhcCCH
Q 002795 439 MLVVEKIKSLRHSKPLEITFTGLI-----------ISSMDGGHIDDCISIFQHMKDH--CEPNIGTVNAMLKVYSRNDMF 505 (880)
Q Consensus 439 ~~l~~~m~~~~~~~p~~~t~~~ll-----------~a~~~~g~~~~A~~i~~~m~~~--~~pd~~~~~~Li~~~~~~g~~ 505 (880)
+..++..... +|-. ..+. ........+....++|-.+... ..+|..+...|.-.|--.|.+
T Consensus 373 l~~L~~Wi~~---~p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 373 LKMLDKWIRN---KPKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHh---Cccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 8888877551 1100 0000 1112222344455566665552 447888899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 002795 506 SKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEAS 583 (880)
Q Consensus 506 ~~A~~lf~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~ 583 (880)
++|+..|+..+. ++| |..+||.|...++...+.++|...|++.++ ++|. +.+...|...|.
T Consensus 447 draiDcf~~AL~---------------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 447 DRAVDCFEAALQ---------------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCM 509 (579)
T ss_pred HHHHHHHHHHHh---------------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhh
Confidence 999999999998 568 677999999999999999999999999886 6777 445556666889
Q ss_pred HcCCHHHHHHHHHHHH
Q 002795 584 RAGKCHLLEHAFDSLL 599 (880)
Q Consensus 584 ~~G~~~~A~~~~~~m~ 599 (880)
..|.+++|...|=..+
T Consensus 510 NlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 510 NLGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 9999999988876544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0019 Score=81.48 Aligned_cols=343 Identities=10% Similarity=-0.003 Sum_probs=210.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHH-
Q 002795 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV- 315 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~- 315 (880)
.+...|++..+..++..+... ....+..........+...|++++|..++......-.. -+....+...
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~---------~~~~~~~~~~~ 452 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKD---------RNIELDGTLQA 452 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccc---------cCcccchhHHH
Confidence 345567888777777766432 11112222234445556789999999988877543100 0000011111
Q ss_pred -HHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHc----CC-CccHH
Q 002795 316 -VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA----ATYGLAMEVMLQSGKYDLVHEFFRKMAKS----GE-AIGAL 385 (880)
Q Consensus 316 -ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~A~~l~~~m~~~----g~-~~d~~ 385 (880)
....+-..+...|++++|...+++....-...+. ...+.+...+...|+++.|...+.+.... |. ..-..
T Consensus 453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 1222233466899999999999998763111122 23455566677899999999999887753 21 11234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CCCC--H
Q 002795 386 TYKVLVRAFWEEGKINEAVAAVRNMEQR----GVV--G-TASVYYELACCLCNNGRWQDAMLVVEKIKSLRH-SKPL--E 455 (880)
Q Consensus 386 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~-~~p~--~ 455 (880)
++..+...+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+...... ..+. .
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 5566777888999999999998886642 221 1 223344556667788999999999888754211 1122 2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhC--CCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCC
Q 002795 456 ITFTGLIISSMDGGHIDDCISIFQHMKDH--CEPNIGTV-----NAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSG 528 (880)
Q Consensus 456 ~t~~~ll~a~~~~g~~~~A~~i~~~m~~~--~~pd~~~~-----~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~ 528 (880)
..+..+...+...|+.+.|...+...... .......+ ...+..+...|+.+.|..++........
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~-------- 684 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF-------- 684 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC--------
Confidence 33444556777899999999998887541 11111111 1123445668999999999877544210
Q ss_pred CCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002795 529 DGAPLKP--DEYTYSSMLEASATAHQWEYFEYVYKGMALS----GCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEA 601 (880)
Q Consensus 529 ~~~~~~P--d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~----g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~ 601 (880)
..+ ....+..+..++...|++++|..++++.... |..++ ..++..+-.+|.+.|+.++|...+.+..+.
T Consensus 685 ----~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 685 ----ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred ----ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 001 1112445666777889999999998887653 33332 234555566678999999999999988764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0016 Score=74.33 Aligned_cols=242 Identities=16% Similarity=0.183 Sum_probs=147.7
Q ss_pred CCHHHHHHHHH--HHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----
Q 002795 188 FTEGQMLKLLK--GLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNL----- 260 (880)
Q Consensus 188 ~~~~~~~~ll~--~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~----- 260 (880)
-|..|--.+++ .|..-|+.+.|.+-.+.+ .+..+|..|.++|.+..+++-|.-.+-.|....|.
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I---------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~ 794 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFI---------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRR 794 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHH---------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHH
Confidence 45555555554 466779999988887755 45678999999999998888887777766542111
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 002795 261 ---YPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVF 337 (880)
Q Consensus 261 ---~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~ 337 (880)
.|+ .+=.-+.......|.+++|+.+|.+.++. ..|=..|-..|.|++|+++-
T Consensus 795 a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~------------------------DLlNKlyQs~g~w~eA~eiA 849 (1416)
T KOG3617|consen 795 AQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY------------------------DLLNKLYQSQGMWSEAFEIA 849 (1416)
T ss_pred HHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH------------------------HHHHHHHHhcccHHHHHHHH
Confidence 122 22222333345678889999988888763 23334466678888887765
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH----------HHcC---------CCccHHHHHHHHHHHHhcC
Q 002795 338 KQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKM----------AKSG---------EAIGALTYKVLVRAFWEEG 398 (880)
Q Consensus 338 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m----------~~~g---------~~~d~~~~~~Li~~~~~~g 398 (880)
+.--+-.+ ..||..-..-+-..++.+.|++.|++. +... -..|...|..-..-+-..|
T Consensus 850 E~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~G 926 (1416)
T KOG3617|consen 850 ETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVG 926 (1416)
T ss_pred hhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhccc
Confidence 54322222 223443444444455666666655532 1111 0123444555555555667
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 002795 399 KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIF 478 (880)
Q Consensus 399 ~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~ 478 (880)
+.+.|+.+|....+ |-+++...|-.|+.++|-.+-++- -|....-.|.+.|...|++.+|..+|
T Consensus 927 emdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es-------gd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 927 EMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES-------GDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred chHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc-------ccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 77777777776554 555667777777777776665442 23455666777777777777777777
Q ss_pred HHHh
Q 002795 479 QHMK 482 (880)
Q Consensus 479 ~~m~ 482 (880)
-+..
T Consensus 991 TrAq 994 (1416)
T KOG3617|consen 991 TRAQ 994 (1416)
T ss_pred HHHH
Confidence 6654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.7e-06 Score=88.05 Aligned_cols=253 Identities=15% Similarity=0.154 Sum_probs=164.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002795 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352 (880)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 352 (880)
-+.-.|++..++.-.+ ..... ...+.....-+.+++...|+.+.++ .++.... .|.....
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~---------------~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av 69 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFS---------------PENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAV 69 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTST---------------CHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHH
T ss_pred HHHHhhhHHHHHHHhh-ccCCC---------------chhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHH
Confidence 3445678887776555 22211 2233445566778888899887644 4444433 6666665
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002795 353 GLAMEVMLQSGKYDLVHEFFRKMAKSGEA-IGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431 (880)
Q Consensus 353 ~~ll~a~~~~g~~~~A~~l~~~m~~~g~~-~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~ 431 (880)
..+...+....+-+.+..-+.+....... .+..........+...|++++|++++..- .+.......+..|.+
T Consensus 70 ~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~ 143 (290)
T PF04733_consen 70 RLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLK 143 (290)
T ss_dssp HHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHH
Confidence 54544443333444444444433333322 23333334445667789999999988652 356667778999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHH
Q 002795 432 NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD----GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSK 507 (880)
Q Consensus 432 ~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~----~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~ 507 (880)
.++++.|.+.++.|.+ ...| .+...+..++.. ...+.+|..+|+++.+..++++.+.|.+..++...|++++
T Consensus 144 ~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~e 219 (290)
T PF04733_consen 144 MNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEE 219 (290)
T ss_dssp TT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHH
T ss_pred cCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999987 3344 344445554433 3479999999999998888999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCC
Q 002795 508 AKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQW-EYFEYVYKGMALSGCQLD 571 (880)
Q Consensus 508 A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~-~~A~~l~~~m~~~g~~pd 571 (880)
|.+++.+..... .-|..|...++.++...|+. +.+.+.+.++... .|+
T Consensus 220 Ae~~L~~al~~~--------------~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~ 268 (290)
T PF04733_consen 220 AEELLEEALEKD--------------PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPN 268 (290)
T ss_dssp HHHHHHHHCCC---------------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTT
T ss_pred HHHHHHHHHHhc--------------cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCC
Confidence 999999987743 22566888888888888877 6677788877753 454
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0011 Score=77.55 Aligned_cols=425 Identities=12% Similarity=0.038 Sum_probs=254.2
Q ss_pred cHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHH
Q 002795 154 EAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233 (880)
Q Consensus 154 ~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~ 233 (880)
-..+|..|-+.++.-.+...|...|+...+.. ..+......+.+.|++..+++.|..+.-..-+..+ ...-...|..
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~--a~~~k~nW~~ 567 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAP--AFACKENWVQ 567 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhch--HHHHHhhhhh
Confidence 34566677777776666777888888887766 45677888999999999999999998432211111 1111233444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCC
Q 002795 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313 (880)
Q Consensus 234 Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd 313 (880)
+.-.|.+.++...|+.-|+...+. -+.|...|..+..+|...|++..|+++|.+... ..|+
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~-----------------LrP~ 628 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASL-----------------LRPL 628 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHh-----------------cCcH
Confidence 555677889999999999998863 445788999999999999999999999999876 3343
Q ss_pred HHHHHHHHH--HHhcCCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-------
Q 002795 314 LVVYNAVLN--ACVPSHQWKGVFWVFKQLRKS------GLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKS------- 378 (880)
Q Consensus 314 ~~ty~~ll~--~~~~~g~~~~A~~l~~~m~~~------g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~------- 378 (880)
.. |...-. .-+..|.+.+|+..+...... +..--..++..+...+...|-...+..+++.-++.
T Consensus 629 s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 SK-YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred hH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 32 222221 245679999999988877532 11112333444444444445555555555554432
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH---H---HHHHHHHHHHhcCCCC
Q 002795 379 GEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW---Q---DAMLVVEKIKSLRHSK 452 (880)
Q Consensus 379 g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~---~---~A~~l~~~m~~~~~~~ 452 (880)
....+...|-.+ ..|..+|-... .+ .|+......+..-+-..+.. + -+.+.+-.-.+ ..
T Consensus 708 ~~~~~~~~Wi~a----------sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls---l~ 772 (1238)
T KOG1127|consen 708 SLQSDRLQWIVA----------SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS---LA 772 (1238)
T ss_pred hhhhhHHHHHHH----------hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH---Hh
Confidence 112222222222 23344444443 22 23333222222212222222 1 01111111111 11
Q ss_pred CCHHHHHHHHHHHHh----C----CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Q 002795 453 PLEITFTGLIISSMD----G----GHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYT 524 (880)
Q Consensus 453 p~~~t~~~ll~a~~~----~----g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~ 524 (880)
.+..+|..+...|.+ + .+...|...+....+-...+..+||.|.-. ...|.+.-|...|-+-+...
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se----- 846 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE----- 846 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-----
Confidence 113344444333322 1 222356666666666566788899887666 66688888888887776642
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH--HH-
Q 002795 525 FLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSL--LE- 600 (880)
Q Consensus 525 ~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m--~~- 600 (880)
+....+|..+-..|....+.+.|.+.|..... +.|+ ...+.-.-..--..|+.-++..+|..- ..
T Consensus 847 ---------p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~ 915 (1238)
T KOG1127|consen 847 ---------PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCS 915 (1238)
T ss_pred ---------ccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc
Confidence 23677898888888899999999999988764 4554 233322222234678888888888752 22
Q ss_pred -CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 002795 601 -AGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 633 (880)
Q Consensus 601 -~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 633 (880)
.|-.|+..-|.+.......+|+.++-+...+++
T Consensus 916 ~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 916 KEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred cccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 355567667776677777778877766665554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0063 Score=69.69 Aligned_cols=312 Identities=12% Similarity=0.071 Sum_probs=193.5
Q ss_pred CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHH-CCC-------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCC
Q 002795 152 RSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQ-SGL-------MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKR 223 (880)
Q Consensus 152 ~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~-~g~-------~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~ 223 (880)
..+...|..|...+.+..+.+-|.-.+-.|.. +|. ..+..+-..+.-.....|.+++|+.++.+..+
T Consensus 754 IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR----- 828 (1416)
T KOG3617|consen 754 IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR----- 828 (1416)
T ss_pred HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----
Confidence 34556777888777777777666555544442 111 11113334444455677899999999987633
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCch-------
Q 002795 224 DLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSK------- 296 (880)
Q Consensus 224 ~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~------- 296 (880)
|..|=+.|-..|.+++|.++-+.--+ + .=..||..-..-+...++.+.|++.|+.......+
T Consensus 829 -------~DLlNKlyQs~g~w~eA~eiAE~~DR---i-HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e 897 (1416)
T KOG3617|consen 829 -------YDLLNKLYQSQGMWSEAFEIAETKDR---I-HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE 897 (1416)
T ss_pred -------HHHHHHHHHhcccHHHHHHHHhhccc---e-ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh
Confidence 44555667788999999987665332 1 12345656666666778888888877764322100
Q ss_pred --hHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002795 297 --RIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRK 374 (880)
Q Consensus 297 --~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~ 374 (880)
..++.| .. -..|...|.=....+-..|+.+.|+.+|...+. |-++++..|-.|+.++|-++-++
T Consensus 898 ~p~~~e~Y---v~--~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e 963 (1416)
T KOG3617|consen 898 YPKQIEQY---VR--RKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE 963 (1416)
T ss_pred ChHHHHHH---HH--hccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh
Confidence 001111 00 123344455555556678999999999987763 56688888899999999988654
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC---------------CHHHHH
Q 002795 375 MAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNG---------------RWQDAM 439 (880)
Q Consensus 375 m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g---------------~~~~A~ 439 (880)
.| |......|.+.|-..|++.+|+.+|-+... |...|+.|-.++ +.-.|-
T Consensus 964 ---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aA 1028 (1416)
T KOG3617|consen 964 ---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAA 1028 (1416)
T ss_pred ---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHH
Confidence 33 667777899999999999999999987653 333333322222 222333
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH---------HHHhhC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 002795 440 LVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIF---------QHMKDH--CEPNIGTVNAMLKVYSRNDMFSKA 508 (880)
Q Consensus 440 ~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~---------~~m~~~--~~pd~~~~~~Li~~~~~~g~~~~A 508 (880)
.+|++.. . -+...+..|-+.|.+.+|.++- +-+.+. -..|+...+-..+.++...++++|
T Consensus 1029 rYyEe~g----~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekA 1099 (1416)
T KOG3617|consen 1029 RYYEELG----G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKA 1099 (1416)
T ss_pred HHHHHcc----h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHH
Confidence 3333321 0 1233445677888887777652 222222 234677777778888888888888
Q ss_pred HHHHHHHHH
Q 002795 509 KELFEETTR 517 (880)
Q Consensus 509 ~~lf~~m~~ 517 (880)
..++....+
T Consensus 1100 V~lL~~ar~ 1108 (1416)
T KOG3617|consen 1100 VNLLCLARE 1108 (1416)
T ss_pred HHHHHHHHH
Confidence 888776554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0067 Score=70.96 Aligned_cols=355 Identities=11% Similarity=0.064 Sum_probs=215.4
Q ss_pred HHHHHHHCCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002795 177 FVRIMNQSGLM--FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLM 254 (880)
Q Consensus 177 l~~~m~~~g~~--~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m 254 (880)
+.++..+.+++ -|+...+..++++...+-..+-.++++.++-. +..+..+.-..|.|+-...+. +.....+..+++
T Consensus 969 LiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~-~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rL 1046 (1666)
T KOG0985|consen 969 LIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD-NSVFSENRNLQNLLILTAIKA-DRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC-CcccccchhhhhhHHHHHhhc-ChHHHHHHHHHh
Confidence 34444444433 34555566666666666666666666665432 122223333444444433333 333444444444
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 002795 255 LEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVF 334 (880)
Q Consensus 255 ~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~ 334 (880)
-.- -.|+ +...+...+.+++|..+|+..- .+....+.||. .-+..+.|.
T Consensus 1047 dny--Da~~------ia~iai~~~LyEEAF~ifkkf~--------------------~n~~A~~VLie---~i~~ldRA~ 1095 (1666)
T KOG0985|consen 1047 DNY--DAPD------IAEIAIENQLYEEAFAIFKKFD--------------------MNVSAIQVLIE---NIGSLDRAY 1095 (1666)
T ss_pred ccC--Cchh------HHHHHhhhhHHHHHHHHHHHhc--------------------ccHHHHHHHHH---HhhhHHHHH
Confidence 321 1122 2233445566677777666542 23344444443 234556665
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002795 335 WVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRG 414 (880)
Q Consensus 335 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g 414 (880)
++-++.. ....|+.+..+-.+.|.+.+|..-|- +. -|+..|.-++....+.|.+++-++++.-..++.
T Consensus 1096 efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyi---ka---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1096 EFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYI---KA---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred HHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHH---hc---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 5544432 33457777777777777777766552 22 256778888888888888888888887766666
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHH
Q 002795 415 VVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNA 494 (880)
Q Consensus 415 ~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~ 494 (880)
-.|... +.||-+|++.++..+...++ ..|+......+-+-|...+.++.|.-+|..+.. |..
T Consensus 1164 ~E~~id--~eLi~AyAkt~rl~elE~fi--------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN--------~a~ 1225 (1666)
T KOG0985|consen 1164 REPYID--SELIFAYAKTNRLTELEEFI--------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN--------FAK 1225 (1666)
T ss_pred cCccch--HHHHHHHHHhchHHHHHHHh--------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh--------HHH
Confidence 555444 35778888888876654432 236777777777888888888888888775544 778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 002795 495 MLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK 574 (880)
Q Consensus 495 Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~ 574 (880)
|...+...|.+..|...-++. -+..||.-+--+|...+.+.-| +|....+-....-
T Consensus 1226 La~TLV~LgeyQ~AVD~aRKA-------------------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhade 1281 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARKA-------------------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADE 1281 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhc-------------------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHh
Confidence 888888888888887665443 3567888888888776665544 3433333334555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHh
Q 002795 575 HAWLLVEASRAGKCHLLEHAFDSLLEAGEI-PHPLFFTEMLIQAIVQ 620 (880)
Q Consensus 575 ~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~ 620 (880)
..-|+..|-..|-+++...+++.-.. +. ...-.|+.+...|.+-
T Consensus 1282 Leeli~~Yq~rGyFeElIsl~Ea~LG--LERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1282 LEELIEYYQDRGYFEELISLLEAGLG--LERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhhhc--hhHHHHHHHHHHHHHHHhc
Confidence 67788889999999998888875432 22 2344666666666543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0091 Score=65.77 Aligned_cols=186 Identities=13% Similarity=0.098 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 002795 471 IDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRN---DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA 546 (880)
Q Consensus 471 ~~~A~~i~~~m~~~-~~pd~~~~~~Li~~~~~~---g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a 546 (880)
.+++..+++...++ ...+.-+|..+.+---.. ...+...+.++++...- .+.|+ .+|...++.
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~------------~~~~t-Lv~~~~mn~ 375 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIE------------DIDLT-LVYCQYMNF 375 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhh------------ccCCc-eehhHHHHH
Confidence 45566666665553 223333333332211111 12455666677766642 13444 467788888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhCCHH
Q 002795 547 SATAHQWEYFEYVYKGMALSGCQL-DQTKHAWLLVEASRAGKCHLLEHAFDSLLE-AGEIPHPLFFTEMLIQAIVQSNYE 624 (880)
Q Consensus 547 ~~~~~~~~~A~~l~~~m~~~g~~p-d~~~~~~ll~~~~~~G~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~ 624 (880)
..+...+..|..+|.+..+.+..+ ++.++++++.-|| .++..-|.++|+.=.. .| -++.--...+.-+..-++-.
T Consensus 376 irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~ 452 (656)
T KOG1914|consen 376 IRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDN 452 (656)
T ss_pred HHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcch
Confidence 888899999999999999998888 6788888887665 6888999999995443 33 23334445667777779999
Q ss_pred HHHHHHHHhhhCCCccCH--HHHHHHHHHhhhccCHHHHHHHHHHHHhCC
Q 002795 625 KAVALINAMAYAPFHITE--RQWTELFESNEDRISRDKLEKLLNALCNCN 672 (880)
Q Consensus 625 ~A~~l~~~m~~~~~~p~~--~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~ 672 (880)
.|..+|++....++.|+. ..|..+|.-=..-|++..+.++-+++...=
T Consensus 453 N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 453 NARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred hHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 999999999877665554 579999998788899998888888766543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.9e-05 Score=82.66 Aligned_cols=246 Identities=12% Similarity=0.061 Sum_probs=125.0
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 002795 167 EREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHE 246 (880)
Q Consensus 167 ~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~ 246 (880)
-.|.+..++.-.+ .....-.........+.+++...|+.+.++.-.. ....|.......+...+....+-+.
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~-------~~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIK-------KSSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS--------TTSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhc-------cCCChhHHHHHHHHHHHhCccchHH
Confidence 3566666654444 2222112233445566667777776554332221 1123444444444443333234444
Q ss_pred HHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHh
Q 002795 247 ALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACV 325 (880)
Q Consensus 247 A~~lf~~m~~~~g~~p-d~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~ 325 (880)
++.-+++.... ...+ +..........+...|++++|++++... .+.......+..|.
T Consensus 85 ~l~~l~~~~~~-~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---------------------~~lE~~al~Vqi~L 142 (290)
T PF04733_consen 85 ALEELKELLAD-QAGESNEIVQLLAATILFHEGDYEEALKLLHKG---------------------GSLELLALAVQILL 142 (290)
T ss_dssp HHHHHHHCCCT-S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---------------------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc---------------------CcccHHHHHHHHHH
Confidence 44444443332 2221 2222222234455667777776655432 23455556666777
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 002795 326 PSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQ----SGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKIN 401 (880)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~ 401 (880)
+.++++.|.+.++.|.+. ..|. +...+..++.. .+.+..|..+|+++... .+++..+.|.+..++...|+++
T Consensus 143 ~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~ 218 (290)
T PF04733_consen 143 KMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYE 218 (290)
T ss_dssp HTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HH
T ss_pred HcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHH
Confidence 777777777777777654 2333 33334444322 23567777777776554 4566677777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHh
Q 002795 402 EAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW-QDAMLVVEKIKS 447 (880)
Q Consensus 402 ~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~-~~A~~l~~~m~~ 447 (880)
+|.+++.+....+.. +..+...++.+....|+. +.+.+++.++..
T Consensus 219 eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 219 EAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 777777776655533 344555566666666666 555566666665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00019 Score=72.62 Aligned_cols=299 Identities=14% Similarity=0.159 Sum_probs=190.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCH
Q 002795 185 GLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI 264 (880)
Q Consensus 185 g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~ 264 (880)
|+.....-+.+++..+.+..++.+|.+++..-.+..+ .+....+.|..+|-...++..|-..++++.. ..|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p----~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~ 77 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP----RSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPEL 77 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHH
Confidence 3334444567777788888899999999987765443 5777888999999999999999999999986 35665
Q ss_pred HHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHH--HhcCCCHHHHHHHHHHHH
Q 002795 265 AAYHS-VAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNA--CVPSHQWKGVFWVFKQLR 341 (880)
Q Consensus 265 ~t~~~-ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~--~~~~g~~~~A~~l~~~m~ 341 (880)
.-|.. -...+-+.+.+..|+.+...|... ++...-..-+.+ .-..+++..+..++++..
T Consensus 78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D~------------------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp 139 (459)
T KOG4340|consen 78 EQYRLYQAQSLYKACIYADALRVAFLLLDN------------------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP 139 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhcCC------------------HHHHHHHHHHHHHHhcccccCcchHHHHHhcc
Confidence 55543 245667889999999999888642 222222222222 235788888888888875
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---
Q 002795 342 KSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSG-EAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVG--- 417 (880)
Q Consensus 342 ~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g-~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p--- 417 (880)
..| +..+.+...-...+.|+++.|.+-|+...+-+ ..| ...||.-+. +.+.|+.+.|++...++.++|+..
T Consensus 140 ~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 140 SEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred CCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 433 33444444444468999999999999988764 554 667776554 456789999999999999887642
Q ss_pred ----------CH--------HHHHHHHHH-------HHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHH
Q 002795 418 ----------TA--------SVYYELACC-------LCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHID 472 (880)
Q Consensus 418 ----------~~--------~t~~~Li~~-------~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~ 472 (880)
|+ ..-+.++.+ +.+.|+++.|.+.+-.|........|++|...+.-.-. .+++.
T Consensus 215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~ 293 (459)
T KOG4340|consen 215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPT 293 (459)
T ss_pred cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCcc
Confidence 11 111222322 24566666666666666543333445555544332211 22333
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002795 473 DCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEE 514 (880)
Q Consensus 473 ~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~ 514 (880)
...+-+.-+....+--..||..++-.||++.-++-|-.++.+
T Consensus 294 ~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 294 EGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 333333333332334456666777777777766666666554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.002 Score=66.75 Aligned_cols=305 Identities=15% Similarity=0.107 Sum_probs=214.6
Q ss_pred CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHH-HH
Q 002795 153 SEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF-VY 231 (880)
Q Consensus 153 ~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~-~~ 231 (880)
.++.-.-.+-..+..+|.+.+|+.-|....+.. +.+-.++-.-...|...|+-..|+.=+..++... ||-. +-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK-----pDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK-----PDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC-----ccHHHHH
Confidence 445555667778888999999999998887543 3333445555667888899999999999998765 3421 22
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHH----H------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCc
Q 002795 232 TKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIA----A------------YHSVAVTLGQVGLLKELVKLIERMRQKPS 295 (880)
Q Consensus 232 ~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~----t------------~~~ll~~~~~~g~~~~A~~l~~~m~~~g~ 295 (880)
..-...+.+.|.++.|..-|+..... .|+.. . ....+..+...|+...|+.....+.+.
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-- 184 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-- 184 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--
Confidence 22334678899999999999999875 33211 1 223344566678999999999988885
Q ss_pred hhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002795 296 KRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKM 375 (880)
Q Consensus 296 ~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m 375 (880)
.+-|...|..--.+|...|.+..|+.=++..-+.. .-+..++-.+-..+...|+.+.++...++.
T Consensus 185 --------------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 185 --------------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred --------------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 56788888888999999999999987776665543 235556666677778889999999988888
Q ss_pred HHcCCCccHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhCCCHHHHH
Q 002795 376 AKSGEAIGALT----YKVL---------VRAFWEEGKINEAVAAVRNMEQRGVVGTASVY---YELACCLCNNGRWQDAM 439 (880)
Q Consensus 376 ~~~g~~~d~~~----~~~L---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~Li~~~~~~g~~~~A~ 439 (880)
++.+ ||... |..| +......+++-++.+..+...+..+......| ..+..|+...+++.+|+
T Consensus 250 LKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 250 LKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred HccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHH
Confidence 8864 55322 2111 12234567777788888777776654333333 34566677888899999
Q ss_pred HHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCC
Q 002795 440 LVVEKIKSLRHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN 488 (880)
Q Consensus 440 ~l~~~m~~~~~~~p~-~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd 488 (880)
....+... ..|+ ..++.--..+|.-...++.|+.-|+...+..+.|
T Consensus 328 qqC~evL~---~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 328 QQCKEVLD---IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHh---cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 98888876 5555 5677777788888888888888888887743333
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.8e-05 Score=81.91 Aligned_cols=219 Identities=10% Similarity=0.022 Sum_probs=175.1
Q ss_pred HhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 002795 324 CVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEA 403 (880)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A 403 (880)
+.+.|++.+|.-.|+...+.. +-+...|..|....+..++-..|+..+.+..+.. +-|..+.-+|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 578999999999999998764 2267889889888999999999999999999975 55788888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHH-----------HHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHH
Q 002795 404 VAAVRNMEQRGVVGTASVYYELAC-----------CLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHID 472 (880)
Q Consensus 404 ~~~~~~m~~~g~~p~~~t~~~Li~-----------~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~ 472 (880)
+++|+.-....++ |..+.. .+.....+....++|-++....+..+|......|--.|--.|.++
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999987654321 111111 112222344556677777665665567777777777788899999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH-HHHHHHHHHHHHcC
Q 002795 473 DCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE-YTYSSMLEASATAH 551 (880)
Q Consensus 473 ~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~-~t~~~ll~a~~~~~ 551 (880)
+|...|+.....-|-|..+||-|...++...+.++|+..|++.++ ++|.- .....|.-+|...|
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---------------LqP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---------------LQPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---------------cCCCeeeeehhhhhhhhhhh
Confidence 999999999987778899999999999999999999999999999 67864 46667788899999
Q ss_pred CHHHHHHHHHHHH
Q 002795 552 QWEYFEYVYKGMA 564 (880)
Q Consensus 552 ~~~~A~~l~~~m~ 564 (880)
.+++|...|-..+
T Consensus 513 ~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 513 AYKEAVKHLLEAL 525 (579)
T ss_pred hHHHHHHHHHHHH
Confidence 9999998876554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.8e-07 Score=60.72 Aligned_cols=32 Identities=25% Similarity=0.534 Sum_probs=17.1
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002795 379 GEAIGALTYKVLVRAFWEEGKINEAVAAVRNM 410 (880)
Q Consensus 379 g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m 410 (880)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00033 Score=84.18 Aligned_cols=219 Identities=9% Similarity=0.012 Sum_probs=174.3
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002795 178 VRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDK-RDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE 256 (880)
Q Consensus 178 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~-~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~ 256 (880)
|+.+..+. |.+...|..-+......++.+.|++++++++..-.- ...--.-+|.++++.-...|.-+...++|++..+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 33334333 566778888888899999999999999999765311 0111235788999988888999999999999988
Q ss_pred cCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHH
Q 002795 257 DCNLYPDI-AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFW 335 (880)
Q Consensus 257 ~~g~~pd~-~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~ 335 (880)
- -|+ ..|..|...|.+.+.+++|-++|+.|.+. .......|...+..+.+..+.+.|..
T Consensus 1526 y----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK----------------F~q~~~vW~~y~~fLl~~ne~~aa~~ 1585 (1710)
T KOG1070|consen 1526 Y----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK----------------FGQTRKVWIMYADFLLRQNEAEAARE 1585 (1710)
T ss_pred h----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH----------------hcchhhHHHHHHHHHhcccHHHHHHH
Confidence 4 243 45788999999999999999999999987 55677899999999999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002795 336 VFKQLRKSGLKP-SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRG 414 (880)
Q Consensus 336 l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g 414 (880)
++.+.++.=.+- ......-.+..-.+.|+.+.++.+|+..+... +--...|+..|++-.+.|+.+.+..+|++....+
T Consensus 1586 lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1586 LLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 999988752221 22333344455578999999999999998874 4457899999999999999999999999999998
Q ss_pred CCCC
Q 002795 415 VVGT 418 (880)
Q Consensus 415 ~~p~ 418 (880)
+.|-
T Consensus 1665 l~~k 1668 (1710)
T KOG1070|consen 1665 LSIK 1668 (1710)
T ss_pred CChh
Confidence 7764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00081 Score=72.64 Aligned_cols=215 Identities=8% Similarity=-0.027 Sum_probs=154.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 002795 157 AIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKG-SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (880)
Q Consensus 157 ~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll 235 (880)
++..+-..+...+..++|+.++..+++.. +-+..+|+..-..+...| ++++++..++.++...+ .+..+|+...
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np----knyqaW~~R~ 113 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP----KNYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC----cchHHhHHHH
Confidence 44445556667889999999999999876 445567777767777777 68999999999987665 5667788777
Q ss_pred HHHHHcCCH--HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCC
Q 002795 236 AILGKAGRP--HEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313 (880)
Q Consensus 236 ~~~~~~g~~--~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd 313 (880)
..+.+.|.. ++++.+++.+.+. -+-|..+|+....++...|+++++++.++++++. ...|
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~----------------d~~N 175 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE----------------DVRN 175 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----------------CCCc
Confidence 677777763 6788999888874 3457889999988999999999999999999986 4667
Q ss_pred HHHHHHHHHHHhcC---CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHcCCCc
Q 002795 314 LVVYNAVLNACVPS---HQW----KGVFWVFKQLRKSGLKPSAATYGLAMEVMLQS----GKYDLVHEFFRKMAKSGEAI 382 (880)
Q Consensus 314 ~~ty~~ll~~~~~~---g~~----~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~----g~~~~A~~l~~~m~~~g~~~ 382 (880)
...|+.....+.+. |.. ++.+.+..+++... +-|...|+-+...+... +...+|..++.+..+.+ +.
T Consensus 176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~ 253 (320)
T PLN02789 176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SN 253 (320)
T ss_pred hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CC
Confidence 77888776665544 222 45666666666543 22556666666666552 34456777777766644 34
Q ss_pred cHHHHHHHHHHHHh
Q 002795 383 GALTYKVLVRAFWE 396 (880)
Q Consensus 383 d~~~~~~Li~~~~~ 396 (880)
+......|++.|+.
T Consensus 254 s~~al~~l~d~~~~ 267 (320)
T PLN02789 254 HVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHh
Confidence 56677777777775
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-06 Score=59.04 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002795 259 NLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290 (880)
Q Consensus 259 g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m 290 (880)
|+.||..|||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777776
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0011 Score=71.58 Aligned_cols=205 Identities=12% Similarity=0.078 Sum_probs=143.2
Q ss_pred hCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 002795 202 DKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG-RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLL 280 (880)
Q Consensus 202 ~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g-~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~ 280 (880)
..++.++|+.+.+.++...+ .+..+|+..-.++...| .+++++..++.+.+. -+-+..+|+.....+.+.|..
T Consensus 49 ~~e~serAL~lt~~aI~lnP----~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNP----GNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCc----hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCch
Confidence 34567888888888887655 45567877777777777 579999999998874 344556677665556666653
Q ss_pred --HHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002795 281 --KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEV 358 (880)
Q Consensus 281 --~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 358 (880)
++++.+++.+.+. .+.|..+|+...-++...|+++++++.+.++++.+.. |...|+....+
T Consensus 123 ~~~~el~~~~kal~~----------------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~v 185 (320)
T PLN02789 123 AANKELEFTRKILSL----------------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFV 185 (320)
T ss_pred hhHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHH
Confidence 6778888888875 5678889998888888889999999999999887644 55666665555
Q ss_pred HHHc---CCh----HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002795 359 MLQS---GKY----DLVHEFFRKMAKSGEAIGALTYKVLVRAFWEE----GKINEAVAAVRNMEQRGVVGTASVYYELAC 427 (880)
Q Consensus 359 ~~~~---g~~----~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~ 427 (880)
+.+. |.. +....+..+++... +-|...|+-+...+... +...+|.+.+.+....++. +......|+.
T Consensus 186 l~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d 263 (320)
T PLN02789 186 ITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLD 263 (320)
T ss_pred HHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHH
Confidence 5444 222 35666666666664 55678888887777763 3345677777776654432 4455566666
Q ss_pred HHHh
Q 002795 428 CLCN 431 (880)
Q Consensus 428 ~~~~ 431 (880)
.|+.
T Consensus 264 ~~~~ 267 (320)
T PLN02789 264 LLCE 267 (320)
T ss_pred HHHh
Confidence 6654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.013 Score=60.88 Aligned_cols=314 Identities=15% Similarity=0.151 Sum_probs=172.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHH-
Q 002795 189 TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY- 267 (880)
Q Consensus 189 ~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~- 267 (880)
+..-..-+.+.+...|.+.+|+.-|..+++..+ .+-.++-.-...|...|+..-|+.-|....+ .+||-..-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp----~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~AR 109 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP----NNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc----hhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHH
Confidence 444455666777777888888888877765332 2333444445567777888888877777776 46775432
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC
Q 002795 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (880)
Q Consensus 268 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (880)
---...+.+.|.++.|..=|+...... |+..+ ...++.+ +...+++.
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~-----------------~s~~~---~~eaqsk-------l~~~~e~~------ 156 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHE-----------------PSNGL---VLEAQSK-------LALIQEHW------ 156 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcC-----------------CCcch---hHHHHHH-------HHhHHHHH------
Confidence 222345677888888888888877643 21111 0111111 01111111
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002795 348 SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELAC 427 (880)
Q Consensus 348 d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~ 427 (880)
.....+..+...|+...|+.....+++.. +-|+..|..-..+|...|++..|+.=++...+..-. ++.++..+-.
T Consensus 157 ---~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~ 231 (504)
T KOG0624|consen 157 ---VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQ 231 (504)
T ss_pred ---HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHH
Confidence 11223344455677777777777777753 456667777777777777777777666655544322 3344444566
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHH-------------HHHHHhCCCHHHHHHHHHHHhhCCC----CCHH
Q 002795 428 CLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGL-------------IISSMDGGHIDDCISIFQHMKDHCE----PNIG 490 (880)
Q Consensus 428 ~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l-------------l~a~~~~g~~~~A~~i~~~m~~~~~----pd~~ 490 (880)
.+...|+.+.++...++..+ ..||...+-.. +......+++.++..-.+...+.-+ ....
T Consensus 232 L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~ 308 (504)
T KOG0624|consen 232 LLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYN 308 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeee
Confidence 66777777777777777665 45554321110 0112233444444444444443211 1122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002795 491 TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-EYTYSSMLEASATAHQWEYFEYVYKGMAL 565 (880)
Q Consensus 491 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd-~~t~~~ll~a~~~~~~~~~A~~l~~~m~~ 565 (880)
.+..+-.+|...|++.+|++...+.+. +.|| +.++.--..+|.-...++.|..-|+...+
T Consensus 309 ~~r~~c~C~~~d~~~~eAiqqC~evL~---------------~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 309 GFRVLCTCYREDEQFGEAIQQCKEVLD---------------IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred eeheeeecccccCCHHHHHHHHHHHHh---------------cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 233344455555666666666666655 3353 55555555555555666666666655554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.022 Score=63.05 Aligned_cols=376 Identities=13% Similarity=0.026 Sum_probs=214.7
Q ss_pred hHHHHhhhhhhccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002795 119 MFEKDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLK 198 (880)
Q Consensus 119 ~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~ 198 (880)
..++...-...++.+.|+..|...+. -..++-..|..-..++...++|++|+.=-..-++.. +.=...|+....
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~-----l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Ga 78 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIM-----LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGA 78 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHc-----cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHH
Confidence 34455555677888999999988777 333456677778889999999999987666655544 333578999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--HHHcCCCCCCH--------HHHH
Q 002795 199 GLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNL--MLEDCNLYPDI--------AAYH 268 (880)
Q Consensus 199 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~--m~~~~g~~pd~--------~t~~ 268 (880)
++.-.|++++|..-|..-++..+ .+...++.|..++.-... +.+.|.. |.. ++.-++ ..|.
T Consensus 79 a~~~lg~~~eA~~ay~~GL~~d~----~n~~L~~gl~~a~~~~~~---~~~~~~~p~~~~--~l~~~p~t~~~~~~~~~~ 149 (539)
T KOG0548|consen 79 ALFGLGDYEEAILAYSEGLEKDP----SNKQLKTGLAQAYLEDYA---ADQLFTKPYFHE--KLANLPLTNYSLSDPAYV 149 (539)
T ss_pred HHHhcccHHHHHHHHHHHhhcCC----chHHHHHhHHHhhhHHHH---hhhhccCcHHHH--HhhcChhhhhhhccHHHH
Confidence 99999999999999998776543 677888888888721111 1111110 000 011111 1233
Q ss_pred HHHHHHHhc-------CCHHHHHHHHHHHHhCCchhHhhhh---hhcCCCCCCC------------C----------HHH
Q 002795 269 SVAVTLGQV-------GLLKELVKLIERMRQKPSKRIKNMH---RKNWDPVLEP------------D----------LVV 316 (880)
Q Consensus 269 ~ll~~~~~~-------g~~~~A~~l~~~m~~~g~~~l~~m~---~~~f~~~~~p------------d----------~~t 316 (880)
.++..+-+. .+........-.+...+ +..++ ......+..| | ..-
T Consensus 150 ~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ 226 (539)
T KOG0548|consen 150 KILEIIQKNPTSLKLYLNDPRLMKADGQLKGVD---ELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHK 226 (539)
T ss_pred HHHHHhhcCcHhhhcccccHHHHHHHHHHhcCc---cccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhH
Confidence 333322111 01111111111111100 00000 0000000111 1 112
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHH-------
Q 002795 317 YNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKV------- 389 (880)
Q Consensus 317 y~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~------- 389 (880)
+-.+.++.-+..++..|++-+....... -+..-++..-.++...|.+.++...-...++.|.. ...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4567777778889999999999888754 35555666777888899888888877777776632 1222332
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------------------------HHHHHHHhCCCHHHHHHHHHH
Q 002795 390 LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYY-------------------------ELACCLCNNGRWQDAMLVVEK 444 (880)
Q Consensus 390 Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-------------------------~Li~~~~~~g~~~~A~~l~~~ 444 (880)
+..+|.+.++++.|+..|.+....-..|+...-. .-...+.+.|++..|+..|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3346677788999999999877655444332210 012234556666666666666
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 445 IKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 445 m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 517 (880)
+.. . .+-|...|....-+|.+.|.+..|..--+...+..++....|.-=..++.-..++++|++.|++.++
T Consensus 384 AIk-r-~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 384 AIK-R-DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHh-c-CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 655 1 1223345666666666666666666655554443333444444444444444566666666666655
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0015 Score=78.86 Aligned_cols=204 Identities=10% Similarity=0.078 Sum_probs=166.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHH
Q 002795 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS-GLKPS---AATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGAL 385 (880)
Q Consensus 310 ~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~-g~~pd---~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~ 385 (880)
.+-....|-..|....+.++.++|.+++++.+.. ++.-. .-.|.++++.-..-|.-+...++|+++.+.. . -..
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHH
Confidence 4455678999999999999999999999998753 11111 2346666666666788888999999998864 2 267
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC---HHHHHHHH
Q 002795 386 TYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL---EITFTGLI 462 (880)
Q Consensus 386 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~---~~t~~~ll 462 (880)
+|..|...|.+.+.+++|.++|+.|.++=- -....|...+..+.++.+-+.|..++.+... .-|. .....-..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALK---SLPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHHHHHHH
Confidence 889999999999999999999999997632 3556799999999999999999999999887 3343 22344445
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002795 463 ISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 519 (880)
Q Consensus 463 ~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 519 (880)
..-.+.|+.+.++.+|+......|.-...|+..|++-.+.|+.+.+..+|++....+
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 566789999999999999998777788999999999999999999999999999977
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0003 Score=79.74 Aligned_cols=213 Identities=13% Similarity=0.087 Sum_probs=91.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 002795 195 KLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTL 274 (880)
Q Consensus 195 ~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~ 274 (880)
.+...+...|-...|..+|++. ..|..+|.+|...|+..+|..+..+..++ +||+..|..+.+..
T Consensus 403 ~laell~slGitksAl~I~Erl------------emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL------------EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH------------HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhc
Confidence 3344444445555555555433 23444455555555555555544444432 34555555554444
Q ss_pred HhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002795 275 GQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGL 354 (880)
Q Consensus 275 ~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 354 (880)
...-.+++|.++++...... -..+-....+.++++++.+.|+.-.+.. ..-..+|-.
T Consensus 468 ~d~s~yEkawElsn~~sarA----------------------~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~ 524 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARA----------------------QRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFG 524 (777)
T ss_pred cChHHHHHHHHHhhhhhHHH----------------------HHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHh
Confidence 44444444444444432210 0000000112344555554444433321 112333444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 002795 355 AMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGR 434 (880)
Q Consensus 355 ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~ 434 (880)
+--+..+.+++..|.+.|...+.-. +-+...||.+-.+|.+.|+-.+|...+.+..+-+..+.. .|..-+....+.|.
T Consensus 525 ~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~-iWENymlvsvdvge 602 (777)
T KOG1128|consen 525 LGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ-IWENYMLVSVDVGE 602 (777)
T ss_pred ccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe-eeechhhhhhhccc
Confidence 4444444555555555554444432 223444555555555555555555555555444432222 13333333444555
Q ss_pred HHHHHHHHHHHHh
Q 002795 435 WQDAMLVVEKIKS 447 (880)
Q Consensus 435 ~~~A~~l~~~m~~ 447 (880)
+++|+..+.++..
T Consensus 603 ~eda~~A~~rll~ 615 (777)
T KOG1128|consen 603 FEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00091 Score=69.50 Aligned_cols=187 Identities=10% Similarity=0.009 Sum_probs=124.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcc--
Q 002795 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS----AATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIG-- 383 (880)
Q Consensus 310 ~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d-- 383 (880)
.......+..+...+...|++++|...|+++.... |+ ..++..+..++...|++++|...++.+++......
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 45566677777778888888888888888887643 32 23556677788888888888888888887642111
Q ss_pred HHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCH
Q 002795 384 ALTYKVLVRAFWEE--------GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE 455 (880)
Q Consensus 384 ~~~~~~Li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~ 455 (880)
..++..+..++... |+.+.|.+.|+.+....+.. ...+..+... +... ....
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~~----~~~~------~~~~--------- 166 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EYAPDAKKRM----DYLR------NRLA--------- 166 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hhHHHHHHHH----HHHH------HHHH---------
Confidence 12455555555554 66778888888877765432 2222111110 0000 0000
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 456 ITFTGLIISSMDGGHIDDCISIFQHMKDHC---EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 456 ~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~---~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
.....+...|.+.|++..|...|....+.. +.....+..+..++.+.|++++|..+++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 011244566888999999999999988742 234678899999999999999999999888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00092 Score=69.46 Aligned_cols=185 Identities=14% Similarity=0.056 Sum_probs=122.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhh
Q 002795 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-I---AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNM 301 (880)
Q Consensus 226 ~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd-~---~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m 301 (880)
.....+..+...+...|++++|...|+++... .|+ . .++..+..++...|++++|...++.+.+...
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p------ 101 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR---YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP------ 101 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc------
Confidence 45667777888888888899998888888764 232 2 3567777888888999999999888877531
Q ss_pred hhhcCCCCCCCCH-HHHHHHHHHHhcC--------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCChHHHHHH
Q 002795 302 HRKNWDPVLEPDL-VVYNAVLNACVPS--------HQWKGVFWVFKQLRKSGLKPSA-ATYGLAMEVMLQSGKYDLVHEF 371 (880)
Q Consensus 302 ~~~~f~~~~~pd~-~ty~~ll~~~~~~--------g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~A~~l 371 (880)
..|.. .++..+..++.+. |+.+.|...|+.+.+. .|+. ..+..+... .. .
T Consensus 102 --------~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------ 161 (235)
T TIGR03302 102 --------NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------ 161 (235)
T ss_pred --------CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------
Confidence 11111 2344444445443 7788999999998865 3432 222221111 00 0
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002795 372 FRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVV-G-TASVYYELACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 372 ~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
.... ......+...|.+.|++.+|...|+...+.... | ....+..+..++.+.|++++|..+++.+..
T Consensus 162 ~~~~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 162 RNRL--------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHH--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0000 011224666788999999999999998876432 2 345677889999999999999999888875
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00045 Score=78.33 Aligned_cols=214 Identities=13% Similarity=0.094 Sum_probs=172.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 002795 386 TYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISS 465 (880)
Q Consensus 386 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~ 465 (880)
.-..+...+...|-...|..+|++... |...|.+|+..|+...|..+..+..+ ..|+..-|..+.+..
T Consensus 400 ~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhc
Confidence 344567778889999999999987653 77789999999999999888887765 568888898888888
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHHHHHHHH
Q 002795 466 MDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSML 544 (880)
Q Consensus 466 ~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll 544 (880)
...--++.|.++++....+ .-..+.....+.++++++.+.|+.-.+.+ | -..||-.+-
T Consensus 468 ~d~s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~n---------------plq~~~wf~~G 526 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEIN---------------PLQLGTWFGLG 526 (777)
T ss_pred cChHHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcC---------------ccchhHHHhcc
Confidence 8888889999998887653 11112222334789999999999888743 4 567888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCH
Q 002795 545 EASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNY 623 (880)
Q Consensus 545 ~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 623 (880)
.+..+.++++.|.+.|..... ..|| ...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|.+.+.....-|.+
T Consensus 527 ~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~ 603 (777)
T KOG1128|consen 527 CAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEF 603 (777)
T ss_pred HHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccH
Confidence 888888999999999988775 5777 6789999999999999999999999988877 45566788888888888999
Q ss_pred HHHHHHHHHhhh
Q 002795 624 EKAVALINAMAY 635 (880)
Q Consensus 624 ~~A~~l~~~m~~ 635 (880)
++|++.+.++..
T Consensus 604 eda~~A~~rll~ 615 (777)
T KOG1128|consen 604 EDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHHH
Confidence 999999998863
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0013 Score=66.26 Aligned_cols=157 Identities=13% Similarity=0.023 Sum_probs=78.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 002795 194 LKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVT 273 (880)
Q Consensus 194 ~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~ 273 (880)
..+-..+.-.|+-+.+..+....... ...|....+.++....+.|++.+|...|++... .-++|..+|+.+..+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~----~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaa 143 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA----YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAA 143 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc----CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHH
Confidence 44444444445555554444433211 113444444455555555555555555555554 344555555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002795 274 LGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353 (880)
Q Consensus 274 ~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 353 (880)
|.+.|++++|..-|.+..+. ..-+...+|.|.-.|.-.|+.+.|..++......+.. |...-.
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L----------------~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~ 206 (257)
T COG5010 144 LDQLGRFDEARRAYRQALEL----------------APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQ 206 (257)
T ss_pred HHHccChhHHHHHHHHHHHh----------------ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHH
Confidence 55555555555555555553 2333444455555555555555555555555544322 333334
Q ss_pred HHHHHHHHcCChHHHHHHHH
Q 002795 354 LAMEVMLQSGKYDLVHEFFR 373 (880)
Q Consensus 354 ~ll~a~~~~g~~~~A~~l~~ 373 (880)
.+..+....|+++.|+.+..
T Consensus 207 NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHhhcCChHHHHhhcc
Confidence 44444555555555555543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0019 Score=65.15 Aligned_cols=165 Identities=13% Similarity=0.036 Sum_probs=122.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcC
Q 002795 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (880)
Q Consensus 227 d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f 306 (880)
|..+ ..+-..+.-.|+-+.+..+...... ..+-|....+..+....+.|++.+|...|.+....
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l------------- 129 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL------------- 129 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-------------
Confidence 4444 5666677777888887777777554 23445566667888888888888888888888775
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHH
Q 002795 307 DPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALT 386 (880)
Q Consensus 307 ~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~ 386 (880)
.++|..+|+.+--+|.+.|++++|..-|.+..+.-.. +...++.+.-.+.-.|+++.|..++......+ ..|..+
T Consensus 130 ---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v 204 (257)
T COG5010 130 ---APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRV 204 (257)
T ss_pred ---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHH
Confidence 6788888888888888888888888888888764221 44556777777778888888888888877764 346777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 387 YKVLVRAFWEEGKINEAVAAVRNMEQ 412 (880)
Q Consensus 387 ~~~Li~~~~~~g~~~~A~~~~~~m~~ 412 (880)
-..|.......|+++.|..+-..-..
T Consensus 205 ~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 205 RQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHHHHhhcCChHHHHhhcccccc
Confidence 77788888888888888877655443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0016 Score=77.49 Aligned_cols=169 Identities=11% Similarity=0.070 Sum_probs=135.3
Q ss_pred chhhhhhHHhHHHHhhhhhhccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 002795 110 RENLRELKEMFEKDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFT 189 (880)
Q Consensus 110 re~l~~l~e~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~ 189 (880)
++-+.++++++++.-. ...+..++.-.... .+.+..+++++..|.....+.|.+++|..+++...+.. +-+
T Consensus 49 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~ 119 (694)
T PRK15179 49 RELLQQARQVLERHAA---VHKPAAALPELLDY-----VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDS 119 (694)
T ss_pred HHHHHHHHHHHHHhhh---hcchHhhHHHHHHH-----HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCc
Confidence 4556677777776321 22222222221111 12567789999999999999999999999999999876 566
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 002795 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS 269 (880)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ 269 (880)
......+...+.+.+++++|+...+..+...+ .+....+.+..++.+.|++++|..+|++.... .+-+..++..
T Consensus 120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p----~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~ 193 (694)
T PRK15179 120 SEAFILMLRGVKRQQGIEAGRAEIELYFSGGS----SSAREILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVG 193 (694)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC----CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHH
Confidence 77888999999999999999999999987665 56788999999999999999999999999973 3334788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 002795 270 VAVTLGQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 270 ll~~~~~~g~~~~A~~l~~~m~~~ 293 (880)
+..++-..|+.++|...|+.....
T Consensus 194 ~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 194 WAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999876
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0034 Score=75.42 Aligned_cols=152 Identities=11% Similarity=0.098 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 002795 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAF 394 (880)
Q Consensus 315 ~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~ 394 (880)
..+..+..+|-+.|+.++|..+|+++.+.. .-|..+.|.+...|+.. ++++|.+++.+.+.. |
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~ 179 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------F 179 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------H
Confidence 345555555666666666666666666554 22555556666666555 666666665555443 3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 002795 395 WEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDC 474 (880)
Q Consensus 395 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A 474 (880)
...+++..+.+++.++....+. +.+.-..+.+.+....+..--..++-.+...|-...+++++
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~-----------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSD-----------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCcc-----------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 3333444444444444433221 11222222233322112222223344444555566666666
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHH
Q 002795 475 ISIFQHMKDHCEPNIGTVNAMLKVYS 500 (880)
Q Consensus 475 ~~i~~~m~~~~~pd~~~~~~Li~~~~ 500 (880)
..+++.+.+..+.|.....-++.+|.
T Consensus 243 i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 243 IYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 67666666655556555555655554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.12 Score=60.70 Aligned_cols=509 Identities=11% Similarity=0.030 Sum_probs=272.8
Q ss_pred HHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCC
Q 002795 164 RLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGR 243 (880)
Q Consensus 164 ~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~ 243 (880)
.+.+.|+.++|..+++.....+. .|..|...+-..|...+..++|..+++++.... |+......+..+|++.+.
T Consensus 52 sl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~-----P~eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY-----PSEELLYHLFMAYVREKS 125 (932)
T ss_pred HHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC-----CcHHHHHHHHHHHHHHHH
Confidence 45678999999999988877663 488888999999999999999999999987643 556677778888899888
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCC
Q 002795 244 PHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGL----------LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313 (880)
Q Consensus 244 ~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~----------~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd 313 (880)
+.+-.+.=-+|-+ .++-+.+.+-++++.+.+.-. ..-|...++.+.+.++ .--+
T Consensus 126 yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g--------------k~~s 189 (932)
T KOG2053|consen 126 YKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG--------------KIES 189 (932)
T ss_pred HHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC--------------ccch
Confidence 8765555445544 234456666667776655421 1234445555544321 1112
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 002795 314 LVVYNAVLNACVPSHQWKGVFWVFKQLR-KSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVR 392 (880)
Q Consensus 314 ~~ty~~ll~~~~~~g~~~~A~~l~~~m~-~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~ 392 (880)
..-...-+..+...|++++|++++..=. +.-..-+...-+.-+..+...+++.+..++-.++...|. |- |...+.
T Consensus 190 ~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~--Dd--y~~~~~ 265 (932)
T KOG2053|consen 190 EAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN--DD--YKIYTD 265 (932)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC--cc--hHHHHH
Confidence 2222233344556788999999994433 332233555556677788899999999999999999873 32 333333
Q ss_pred HHH----------------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHH
Q 002795 393 AFW----------------EEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI 456 (880)
Q Consensus 393 ~~~----------------~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~ 456 (880)
.+. ..+..+...+..++.........-..+-.+..-+..-|+.++++..|-+-. |..|
T Consensus 266 sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf---g~kp--- 339 (932)
T KOG2053|consen 266 SVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF---GDKP--- 339 (932)
T ss_pred HHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh---CCCc---
Confidence 222 223334444444333332111111112222333345577777665544322 2333
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCH-------HHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCCcc
Q 002795 457 TFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI-------GTVNAMLKVYSRNDM-----FSKAKELFEETTRANSSGYT 524 (880)
Q Consensus 457 t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~-------~~~~~Li~~~~~~g~-----~~~A~~lf~~m~~~g~~~~~ 524 (880)
.|..=+..|..+=..+....++....... ++. .-+.+.+..-.-.|. .+.-..++.+....-.+.
T Consensus 340 cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~-~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~g-- 416 (932)
T KOG2053|consen 340 CCAIDLNHYLGHLNIDQLKSLMSKLVLAD-DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKG-- 416 (932)
T ss_pred HhHhhHHHhhccCCHHHHHHHHHHhhccC-CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcc--
Confidence 22222333333333344444444433210 110 012222222222331 223333333322211000
Q ss_pred ccCCCCCCCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHHHcCCHHHHH
Q 002795 525 FLSGDGAPLKPDEY---------TYSSMLEASATAHQWEYFEYVYKGMALSGC--QL-DQTKHAWLLVEASRAGKCHLLE 592 (880)
Q Consensus 525 ~l~~~~~~~~Pd~~---------t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~--~p-d~~~~~~ll~~~~~~G~~~~A~ 592 (880)
..-+.++-|... +-+.|+..|-+.++.....+...- .+.|+ .| |..+--.+|..|+-.|-+..|.
T Consensus 417 --ls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~L-LE~glt~s~hnf~~KLlLiriY~~lGa~p~a~ 493 (932)
T KOG2053|consen 417 --LSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITL-LENGLTKSPHNFQTKLLLIRIYSYLGAFPDAY 493 (932)
T ss_pred --ccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHhhcCCccHHHHHHHHHHHHHhcCChhHH
Confidence 000112233322 346777888888877644333322 22333 22 3445567889999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCH-HHHHHHHHHhhhccCHHHHHHHH---HHH
Q 002795 593 HAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITE-RQWTELFESNEDRISRDKLEKLL---NAL 668 (880)
Q Consensus 593 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~~~~~ll~a~~~~~~~~~a~~l~---~~~ 668 (880)
++|..|.-+.+.-|...|. +...+...|++..+...++....- +.-+. .+-..+.-|| +.|.+.+..++. ++|
T Consensus 494 ~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL 570 (932)
T KOG2053|consen 494 ELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRL 570 (932)
T ss_pred HHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHH
Confidence 9999988788887776665 445555557777777776665310 00001 1112222333 345555444443 333
Q ss_pred HhCCCCCChhhHHHHHHHHHHHHhccchhhhhhhccc-----ccccccccccc
Q 002795 669 CNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHF-----GSQAIDISPLH 716 (880)
Q Consensus 669 ~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~-----~~~~v~~~~l~ 716 (880)
..+... .+...-...++.++..++...-.+.+.. ..+.|.|..|.
T Consensus 571 ~~S~q~---~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~l~~~e~~I~w~~L~ 620 (932)
T KOG2053|consen 571 MHSLQK---WACRVENLQLSLLCNADRGTQLLKLLESMKLPPSEDRIQWVSLS 620 (932)
T ss_pred HHHHHH---HHHHHHHHHHHHHHhCCcHHHHHHHHhccccCcchhhccccccc
Confidence 333221 1222223367777777776554444322 23346665553
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0022 Score=76.34 Aligned_cols=149 Identities=9% Similarity=-0.057 Sum_probs=95.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCH
Q 002795 185 GLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI 264 (880)
Q Consensus 185 g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~ 264 (880)
.++.+...+-.|.....+.|++++|..+++.++...| .+......+..++.+.+++++|+..+++.... -+-+.
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P----d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~ 154 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP----DSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSA 154 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC----CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCH
Confidence 3345566777777777777777777777777766544 35566667777777777777777777777663 22234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 002795 265 AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344 (880)
Q Consensus 265 ~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g 344 (880)
...+.+..++.+.|++++|..+|++.... .+-+..++..+-.++-..|+.++|...|+...+.-
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~----------------~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSRQ----------------HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhc----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 45555666667777777777777777653 33346666666667777777777777777766432
Q ss_pred CCCCHHHHHHHH
Q 002795 345 LKPSAATYGLAM 356 (880)
Q Consensus 345 ~~pd~~t~~~ll 356 (880)
.|....|+..+
T Consensus 219 -~~~~~~~~~~~ 229 (694)
T PRK15179 219 -GDGARKLTRRL 229 (694)
T ss_pred -CcchHHHHHHH
Confidence 23444444433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0029 Score=63.57 Aligned_cols=150 Identities=8% Similarity=0.062 Sum_probs=100.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCH
Q 002795 235 LAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL 314 (880)
Q Consensus 235 l~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~ 314 (880)
+..|...|+++.+....+.+.. |. . .+...++.+++...+....+. .+.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~-----~~-~-------~~~~~~~~~~~i~~l~~~L~~----------------~P~~~ 73 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD-----PL-H-------QFASQQTPEAQLQALQDKIRA----------------NPQNS 73 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC-----cc-c-------cccCchhHHHHHHHHHHHHHH----------------CCCCH
Confidence 4457777777765444332221 11 0 122355666777777776665 56677
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHHcCCCccHHHHHHHH
Q 002795 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVM-LQSGK--YDLVHEFFRKMAKSGEAIGALTYKVLV 391 (880)
Q Consensus 315 ~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~-~~~g~--~~~A~~l~~~m~~~g~~~d~~~~~~Li 391 (880)
..|..+...|...|++++|...|++..+... -+...+..+..++ ...|+ .++|.+++++..+.+ +-+..++..+.
T Consensus 74 ~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA 151 (198)
T PRK10370 74 EQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLA 151 (198)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHH
Confidence 7888888888888888888888888776542 2556666666653 56666 478888888888875 44677777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC
Q 002795 392 RAFWEEGKINEAVAAVRNMEQRGV 415 (880)
Q Consensus 392 ~~~~~~g~~~~A~~~~~~m~~~g~ 415 (880)
..+.+.|++++|+..|+++.+...
T Consensus 152 ~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 152 SDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888888888888888888877654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0065 Score=73.14 Aligned_cols=239 Identities=10% Similarity=0.101 Sum_probs=169.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhh
Q 002795 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS-VAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRK 304 (880)
Q Consensus 226 ~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~-ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~ 304 (880)
.+...|..|+..|...+++++|.++.+...+ ..|+...+-. +...+.+.++.+.+..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~---~~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------ 87 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLK---EHKKSISALYISGILSLSRRPLNDSNLL------------------ 87 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCcceehHHHHHHHHHhhcchhhhhhh------------------
Confidence 4567889999999899999999999996665 5887654332 23355566665544443
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccH
Q 002795 305 NWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGA 384 (880)
Q Consensus 305 ~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~ 384 (880)
.++.......++.-+..++..|...+ -+...+-.+..+|-+.|+.+++..+++++++.. +-|+
T Consensus 88 --------------~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~ 150 (906)
T PRK14720 88 --------------NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNP 150 (906)
T ss_pred --------------hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccH
Confidence 23333444455544555555665532 245577888899999999999999999999987 6789
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 002795 385 LTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS 464 (880)
Q Consensus 385 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a 464 (880)
.+.|.+...|+.. ++++|.+++.+...+ |....++..+..++.++.. ..|+.+.+
T Consensus 151 ~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~---~~~~d~d~------ 205 (906)
T PRK14720 151 EIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH---YNSDDFDF------ 205 (906)
T ss_pred HHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh---cCcccchH------
Confidence 9999999999999 999999998887654 6667788899999999987 33443221
Q ss_pred HHhCCCHHHHHHHHHHHhh--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHH
Q 002795 465 SMDGGHIDDCISIFQHMKD--HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSS 542 (880)
Q Consensus 465 ~~~~g~~~~A~~i~~~m~~--~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ 542 (880)
-.++.+.+.. +...-+.++-.+-..|-...+++++..+|+.+++.. .-|..+..-
T Consensus 206 ---------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~--------------~~n~~a~~~ 262 (906)
T PRK14720 206 ---------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD--------------NKNNKAREE 262 (906)
T ss_pred ---------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC--------------CcchhhHHH
Confidence 1222233322 123445667777788888999999999999999953 236667777
Q ss_pred HHHHHHHc
Q 002795 543 MLEASATA 550 (880)
Q Consensus 543 ll~a~~~~ 550 (880)
++.+|...
T Consensus 263 l~~~y~~k 270 (906)
T PRK14720 263 LIRFYKEK 270 (906)
T ss_pred HHHHHHHH
Confidence 77777643
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.031 Score=61.37 Aligned_cols=185 Identities=15% Similarity=0.143 Sum_probs=136.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHH
Q 002795 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKV 389 (880)
Q Consensus 310 ~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~ 389 (880)
..|+...+...+.+......-..+..++.+-.+. .-...-|...+ .+...|+++.|+..++.+++. .+-|+..+..
T Consensus 270 d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~ 345 (484)
T COG4783 270 DSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAA-QPDNPYYLEL 345 (484)
T ss_pred CCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHh-CCCCHHHHHH
Confidence 5677777777777655443333333333332221 11233344444 356789999999999998886 3567778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 002795 390 LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGG 469 (880)
Q Consensus 390 Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g 469 (880)
....+.+.++..+|.+.++.+....+.. ...+-.+..+|.+.|++.+|+.+++.... ..+-|...|..|-.+|...|
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALDPNS-PLLQLNLAQALLKGGKPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhC
Confidence 8899999999999999999999876543 44555688899999999999999999876 34456678999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 470 HIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 470 ~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
+..++..-.. .+|...|+++.|+..+....+.
T Consensus 423 ~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 423 NRAEALLARA-----------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred chHHHHHHHH-----------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 9887766544 4466789999999999988886
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0013 Score=66.02 Aligned_cols=119 Identities=11% Similarity=0.061 Sum_probs=102.1
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHH-HHcCC--H
Q 002795 168 REMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAIL-GKAGR--P 244 (880)
Q Consensus 168 ~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~-~~~g~--~ 244 (880)
.+..+++...++...+.. +.+...|..+...|...|+++.|...|+.+++..+ .+..++..+..++ ...|+ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P----~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG----ENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCCCCc
Confidence 556678888888888776 78899999999999999999999999999988765 5778888888864 67777 5
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 002795 245 HEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 245 ~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~ 293 (880)
++|..++++..+. .+-+..++..+...+.+.|++++|...++.+.+.
T Consensus 127 ~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 127 PQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999984 3446788888999999999999999999999886
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.032 Score=56.54 Aligned_cols=151 Identities=12% Similarity=0.084 Sum_probs=81.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHH
Q 002795 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350 (880)
Q Consensus 271 l~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 350 (880)
...|+..|++++|++...... +......=...+.+..+++-|.+.+++|.+. -+..
T Consensus 115 a~i~~~~~~~deAl~~~~~~~---------------------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE---------------------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 345666677777766655521 1122222223344555666666667766653 2445
Q ss_pred HHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002795 351 TYGLAMEVMLQ----SGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELA 426 (880)
Q Consensus 351 t~~~ll~a~~~----~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li 426 (880)
|.+-|..++.+ .+.+..|.-+|++|-++ .+|+..+.|-+..++...|++++|..++++.+.+... +..+...+|
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nli 248 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHH
Confidence 55555555432 34466667777776654 3566666666666666777777777777776666544 333444444
Q ss_pred HHHHhCCCHH-HHHHHHHHHHh
Q 002795 427 CCLCNNGRWQ-DAMLVVEKIKS 447 (880)
Q Consensus 427 ~~~~~~g~~~-~A~~l~~~m~~ 447 (880)
.+-...|+.. ...+.+.+++.
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHh
Confidence 4444444432 23344444444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.018 Score=57.89 Aligned_cols=128 Identities=13% Similarity=0.149 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCC
Q 002795 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVL 310 (880)
Q Consensus 231 ~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~ 310 (880)
|..+.-+...+|+.+.|...++.+..+..-.+-+.-...+ .+-..|++++|.++|+.+.+. .
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~d----------------d 116 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLED----------------D 116 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhcc----------------C
Confidence 4444444444555555555555555431101111111111 123344555555555555443 3
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002795 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAK 377 (880)
Q Consensus 311 ~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~ 377 (880)
+.|.++|-.-+...-..|+..+|++-+.+..+. +..|...|.-+-..|...|+++.|.-.+++++-
T Consensus 117 pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 117 PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 334444444343333344444444444443332 233444444444444444555444444444444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.016 Score=58.67 Aligned_cols=136 Identities=11% Similarity=0.174 Sum_probs=61.9
Q ss_pred HHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHH
Q 002795 464 SSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSM 543 (880)
Q Consensus 464 a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~l 543 (880)
.|++.|++++|.+...... +......=+..+.+..+++-|.+.+++|..- -+..|.+-|
T Consensus 117 i~~~~~~~deAl~~~~~~~-----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----------------ded~tLtQL 175 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGE-----NLEAAALNVQILLKMHRFDLAEKELKKMQQI----------------DEDATLTQL 175 (299)
T ss_pred HhhcCCChHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----------------chHHHHHHH
Confidence 3455555555555544411 2233333333344445555555555555442 233444444
Q ss_pred HHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002795 544 LEASATA----HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV 619 (880)
Q Consensus 544 l~a~~~~----~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 619 (880)
..++.+. +.+..|.-+|++|.++ ..|+..+.+-...++...|++++|..+++....+.. .++.+..+++.....
T Consensus 176 A~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~ 253 (299)
T KOG3081|consen 176 AQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALH 253 (299)
T ss_pred HHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHH
Confidence 4444333 3345555555555431 445555555555555555555555555555544332 223333334444444
Q ss_pred hCC
Q 002795 620 QSN 622 (880)
Q Consensus 620 ~g~ 622 (880)
.|.
T Consensus 254 ~Gk 256 (299)
T KOG3081|consen 254 LGK 256 (299)
T ss_pred hCC
Confidence 443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0013 Score=62.44 Aligned_cols=95 Identities=11% Similarity=-0.017 Sum_probs=76.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 002795 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV 272 (880)
Q Consensus 193 ~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~ 272 (880)
+..+...+...|++++|...|+.++...+ .+..+|..+..++.+.|++++|...|+..... .+.+..++..+..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~ 100 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP----WSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGV 100 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHH
Confidence 55567777888888888888888876554 56778888888888888888888888888873 4456778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 002795 273 TLGQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~ 293 (880)
++...|++++|...|......
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888774
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.66 E-value=6.1e-05 Score=51.91 Aligned_cols=33 Identities=18% Similarity=0.488 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC
Q 002795 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS 348 (880)
Q Consensus 316 ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd 348 (880)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0019 Score=61.31 Aligned_cols=101 Identities=9% Similarity=-0.093 Sum_probs=88.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHH
Q 002795 157 AIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLA 236 (880)
Q Consensus 157 ~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~ 236 (880)
.+..+...+...|++++|...|+...... +.+...+..+...+...|++++|...|+.++...+ .+...+..+..
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p----~~~~a~~~lg~ 100 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA----SHPEPVYQTGV 100 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----CCcHHHHHHHH
Confidence 35556778889999999999999999887 67889999999999999999999999999998655 57789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCHH
Q 002795 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIA 265 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~~~~g~~pd~~ 265 (880)
++...|++++|+..|+...+. .|+..
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~---~p~~~ 126 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKM---SYADA 126 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCh
Confidence 999999999999999999874 45443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.59 E-value=9e-05 Score=50.81 Aligned_cols=33 Identities=30% Similarity=0.653 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC
Q 002795 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (880)
Q Consensus 315 ~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (880)
.+||++|.+|++.|+++.|..+|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0023 Score=59.85 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=76.8
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 002795 178 VRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLED 257 (880)
Q Consensus 178 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~ 257 (880)
|+...... +.+......+...+...|++++|...|+.+....+ .+...|..+...+.+.|++++|..+|+...+.
T Consensus 6 ~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 6 LKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP----YNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred HHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444333 23445566666777778888888888887766543 46677778888888888888888888877663
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 002795 258 CNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 258 ~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~ 293 (880)
.+.+..++..+...+...|++++|...|+...+.
T Consensus 81 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 81 --DPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred --CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445667777777788888888888888877763
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00013 Score=50.24 Aligned_cols=33 Identities=27% Similarity=0.589 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002795 386 TYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT 418 (880)
Q Consensus 386 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 418 (880)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0035 Score=58.62 Aligned_cols=106 Identities=13% Similarity=0.012 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcC
Q 002795 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (880)
Q Consensus 227 d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f 306 (880)
+......+...+...|++++|...|+.+... .+.+...|..+...+...|++++|...++.....
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------------- 80 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL------------- 80 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 4556667777788888888888888887763 3446677777888888888888888888887664
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002795 307 DPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352 (880)
Q Consensus 307 ~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 352 (880)
.+.+...|..+...|...|++++|...|+...+. .|+...+
T Consensus 81 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 81 ---DPDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEY 121 (135)
T ss_pred ---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchH
Confidence 4456667777777788888888888888877764 3444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.027 Score=61.75 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=64.5
Q ss_pred hCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCH
Q 002795 202 DKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-IAAYHSVAVTLGQVGLL 280 (880)
Q Consensus 202 ~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd-~~t~~~ll~~~~~~g~~ 280 (880)
..|.++.|+..+..+++..| .|++.+......+.+.++..+|.+.|+.+... .|+ ...+-.+..+|.+.|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P----~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQP----DNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HhcccchHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCCh
Confidence 44566666666666555433 45555555566666666666666666666552 343 34444455556666666
Q ss_pred HHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 002795 281 KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVF 337 (880)
Q Consensus 281 ~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~ 337 (880)
.+|..++...... .+-|...|..|-.+|...|+..++..-.
T Consensus 391 ~eai~~L~~~~~~----------------~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 391 QEAIRILNRYLFN----------------DPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHHHHhhc----------------CCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 6666666665554 4455566666666666666665555443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0002 Score=49.00 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 002795 385 LTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVG 417 (880)
Q Consensus 385 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p 417 (880)
.+||++|.+|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.12 Score=52.03 Aligned_cols=158 Identities=11% Similarity=0.099 Sum_probs=75.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 002795 425 LACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDM 504 (880)
Q Consensus 425 Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~ 504 (880)
++-+....|+.+.|...++.+...-...+-+.-+.+++ +-..|++++|+++++.+.+..+.|.+++---+...-..|+
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC
Confidence 33444455555556555555554111111111111111 2234555666666666555445555555554444444555
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH-
Q 002795 505 FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ-TKHAWLLVEA- 582 (880)
Q Consensus 505 ~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~-~~~~~ll~~~- 582 (880)
.-+|++-+....+. +.-|...|.-+-..|...|++++|.-.+++++- +.|.. ..+..+-..+
T Consensus 136 ~l~aIk~ln~YL~~--------------F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Y 199 (289)
T KOG3060|consen 136 NLEAIKELNEYLDK--------------FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLY 199 (289)
T ss_pred cHHHHHHHHHHHHH--------------hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHH
Confidence 55555555555553 344556666666666666666666666655553 33432 2222333322
Q ss_pred H--HcCCHHHHHHHHHHHHH
Q 002795 583 S--RAGKCHLLEHAFDSLLE 600 (880)
Q Consensus 583 ~--~~G~~~~A~~~~~~m~~ 600 (880)
. -..+++.|...|.+..+
T Consensus 200 t~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 200 TQGGAENLELARKYYERALK 219 (289)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 1 12244455555555554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0056 Score=67.56 Aligned_cols=127 Identities=13% Similarity=0.096 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 002795 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS 269 (880)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ 269 (880)
-.....|++.+...++++.|..+|+.+.+.. |+ +...|+..+...++-.+|.+++++..+. .+-|......
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~-----pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~ 239 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD-----PE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNL 239 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC-----Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 3455677788888899999999999997643 33 4556888888899999999999999874 4456777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 002795 270 VAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLR 341 (880)
Q Consensus 270 ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~ 341 (880)
-...|.+.++++.|+.+.+++... .+-+-.+|..|..+|.+.|+++.|+..++.+-
T Consensus 240 Qa~fLl~k~~~~lAL~iAk~av~l----------------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 240 QAEFLLSKKKYELALEIAKKAVEL----------------SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh----------------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 788899999999999999999985 34455599999999999999999999998874
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.67 Score=54.72 Aligned_cols=224 Identities=15% Similarity=0.130 Sum_probs=155.4
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCH
Q 002795 167 EREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGL--GDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRP 244 (880)
Q Consensus 167 ~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~--~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~ 244 (880)
..+++..|+.....+.+.. |+. .|..+++++ .+.|+.++|..+++.....+. .|..+...+-..|...+..
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~----~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG----TDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC----CchHHHHHHHHHHHHHhhh
Confidence 4678889998888877653 333 345555555 588999999999987754332 4889999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHH
Q 002795 245 HEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNAC 324 (880)
Q Consensus 245 ~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~ 324 (880)
++|..+|++.... .|+..-...+..+|.+.+.+.+-.++--+|-+. .+.+...+=++++.+
T Consensus 94 d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~----------------~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 94 DEAVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN----------------FPKRAYYFWSVISLI 154 (932)
T ss_pred hHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------CCcccchHHHHHHHH
Confidence 9999999999864 677777778888899998887655554444443 344445444555554
Q ss_pred hcCC----------CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChHHHHHHH-HHHHHcCCCccHHHHHHHHH
Q 002795 325 VPSH----------QWKGVFWVFKQLRKSG-LKPSAATYGLAMEVMLQSGKYDLVHEFF-RKMAKSGEAIGALTYKVLVR 392 (880)
Q Consensus 325 ~~~g----------~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~A~~l~-~~m~~~g~~~d~~~~~~Li~ 392 (880)
.+.- -..-|...++.+.+.+ -.-+..-.-.-+..+-..|++++|..++ ....+.-...+...-+--+.
T Consensus 155 lqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~d 234 (932)
T KOG2053|consen 155 LQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLD 234 (932)
T ss_pred HHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 4321 1233556666666543 1112222223344456789999999999 44444444556666677888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC
Q 002795 393 AFWEEGKINEAVAAVRNMEQRGVV 416 (880)
Q Consensus 393 ~~~~~g~~~~A~~~~~~m~~~g~~ 416 (880)
.+...+++.+..++-.++..+|..
T Consensus 235 llk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 235 LLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHHHhcChHHHHHHHHHHHHhCCc
Confidence 899999999999999999888753
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00036 Score=46.54 Aligned_cols=31 Identities=26% Similarity=0.573 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC
Q 002795 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGL 345 (880)
Q Consensus 315 ~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~ 345 (880)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777776653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0028 Score=70.27 Aligned_cols=123 Identities=14% Similarity=0.098 Sum_probs=97.4
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHH
Q 002795 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS--GLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTY 387 (880)
Q Consensus 310 ~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~ 387 (880)
.+.+.+....+++.+....+.+.+..++.+.+.. ....-..|..++++.|...|..+.+..++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 5667777888888888888888888888888754 22222345568999999999999999999888888999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 002795 388 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNN 432 (880)
Q Consensus 388 ~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~ 432 (880)
|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999998888887776767666555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.013 Score=55.65 Aligned_cols=129 Identities=15% Similarity=0.065 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHH
Q 002795 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFT---EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYT 232 (880)
Q Consensus 156 ~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~ 232 (880)
..|..++..+. .++...+...++.+.... +.+ ......+...+...|++++|...|++++...+. ......+.-
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d-~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD-PELKPLARL 89 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-HHHHHHHHH
Confidence 45566666664 788888888899888764 344 344455668888999999999999999875422 111234566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002795 233 KLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290 (880)
Q Consensus 233 ~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m 290 (880)
.|...+...|++++|+..++..... ......+......|.+.|+.++|...|+..
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7888999999999999999775432 334556777888999999999999999864
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.53 Score=51.40 Aligned_cols=415 Identities=10% Similarity=0.073 Sum_probs=227.3
Q ss_pred HHhCCCHHHHHHHHHHHHhCcCCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 002795 200 LGDKGSWRQAMSVLDWVYGLKDKRDL--KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV 277 (880)
Q Consensus 200 ~~~~g~~~~A~~l~~~~~~~~~~~~~--~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~ 277 (880)
+-+++++.+|..+|.++.+.....+. ...+.-+.++++|... +.+.....+....+..|-.|-...+-.+ .+-+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L--~~Y~~ 92 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKAL--VAYKQ 92 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHH--HHHHh
Confidence 34678899999999988765432210 0133456777777654 5666666666766653322222222222 24577
Q ss_pred CCHHHHHHHHHHHHhC--Cch-hHhhh-hhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC----CCCCCH
Q 002795 278 GLLKELVKLIERMRQK--PSK-RIKNM-HRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS----GLKPSA 349 (880)
Q Consensus 278 g~~~~A~~l~~~m~~~--g~~-~l~~m-~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~----g~~pd~ 349 (880)
+.+++|.+.+..-... +.. .+.+. +.. .-+|...=+..+.++...|.+.++..++++|... ...-+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~-----l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQ-----LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHH-----HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 8899999888776654 210 01000 000 1123333456777889999999999999998643 333688
Q ss_pred HHHHHHHHHHHHcC--------C-------hHHHHHHHHHHHHc------CCCccHHHHHHHHHHHHhcC--CHHHHHHH
Q 002795 350 ATYGLAMEVMLQSG--------K-------YDLVHEFFRKMAKS------GEAIGALTYKVLVRAFWEEG--KINEAVAA 406 (880)
Q Consensus 350 ~t~~~ll~a~~~~g--------~-------~~~A~~l~~~m~~~------g~~~d~~~~~~Li~~~~~~g--~~~~A~~~ 406 (880)
.+|+.++-.++++= . ++.+.-...+|... .+-|.......++....-.- +..--+++
T Consensus 168 d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~ 247 (549)
T PF07079_consen 168 DMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQI 247 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHH
Confidence 88888665554431 1 11122122222211 12222222222322222111 11122233
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002795 407 VRNMEQRGVVGTA-SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP----LEITFTGLIISSMDGGHIDDCISIFQHM 481 (880)
Q Consensus 407 ~~~m~~~g~~p~~-~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p----~~~t~~~ll~a~~~~g~~~~A~~i~~~m 481 (880)
+..-...-+.|+. .+...|+..+.+ +.+++..+.+.+.. ..+.+ -..+|..++..+.+.++...|.+.+..+
T Consensus 248 l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~-~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL 324 (549)
T PF07079_consen 248 LENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIAS-SKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL 324 (549)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333344444542 122233333333 55555555555544 11111 1246788888888888888888777665
Q ss_pred hhCCC--------------------CCHHHHHH--------------------HHH-------HHHhcCC-HHHHHHHHH
Q 002795 482 KDHCE--------------------PNIGTVNA--------------------MLK-------VYSRNDM-FSKAKELFE 513 (880)
Q Consensus 482 ~~~~~--------------------pd~~~~~~--------------------Li~-------~~~~~g~-~~~A~~lf~ 513 (880)
.--.+ -|-..++. |++ -+-+.|. -++|+++++
T Consensus 325 ~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 325 KILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred HhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 43100 01111111 111 1222343 677888888
Q ss_pred HHHHcCCCCccccCCCCCCCCC-CHHHHHHHH----HHHHHc---CCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 002795 514 ETTRANSSGYTFLSGDGAPLKP-DEYTYSSML----EASATA---HQWEYFEYVYKGMALSGCQLD----QTKHAWLLVE 581 (880)
Q Consensus 514 ~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll----~a~~~~---~~~~~A~~l~~~m~~~g~~pd----~~~~~~ll~~ 581 (880)
.+.. +.| |..+-|.+. .+|... ....+-..+-.-+.+.|+.|- ...-|.|-++
T Consensus 405 ~il~---------------ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 405 LILQ---------------FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred HHHH---------------hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 8877 345 444433333 334333 345555555556667788774 3455666666
Q ss_pred --HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHH
Q 002795 582 --ASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTE 647 (880)
Q Consensus 582 --~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 647 (880)
+-..|++.++.-.-..+.+ +.|++.+|.-+..+++.+.++++|..++..+ .|+..++.+
T Consensus 470 EyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 3568999988877666666 6799999997777788888999999999987 456666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00047 Score=45.96 Aligned_cols=29 Identities=31% Similarity=0.657 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002795 386 TYKVLVRAFWEEGKINEAVAAVRNMEQRG 414 (880)
Q Consensus 386 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g 414 (880)
+||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.017 Score=54.93 Aligned_cols=130 Identities=12% Similarity=0.064 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC--HHHHH
Q 002795 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD--IAAYH 268 (880)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd--~~t~~ 268 (880)
..|..++..+ ..++...+...++.+.+..+... ....+.-.+...+...|++++|...|+..... ...|+ .....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~-ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSP-YAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 4555666666 47889999999999887654321 12345556778889999999999999999986 32222 23455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 002795 269 SVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQL 340 (880)
Q Consensus 269 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m 340 (880)
.|...+...|++++|+..+..... .......+.....+|.+.|++++|...|+..
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~-----------------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPD-----------------EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccC-----------------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677888999999999999977433 3344556667778899999999999999764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.013 Score=64.63 Aligned_cols=124 Identities=10% Similarity=0.042 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 002795 388 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD 467 (880)
Q Consensus 388 ~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~ 467 (880)
.+|+..+...++++.|..+|+++.+.. |+. ...|+..+...++..+|++++++... ..+-+......-...|.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence 344555555666777777777776665 332 23356666666666777777766665 111233334444455667
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 468 GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 468 ~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 517 (880)
.++.+.|..+.+++.+-.+-+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 77777777777777775566677888888888888888888888777654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0044 Score=68.67 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=97.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 002795 259 NLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFK 338 (880)
Q Consensus 259 g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~ 338 (880)
+.+.+......++..+....+++.+..++...+..... ...-..|..++++.|.+.|..+.++.++.
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~-------------~~~~~~t~ha~vR~~l~~~~~~~~l~~L~ 127 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNC-------------SYLLPSTHHALVRQCLELGAEDELLELLK 127 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccc-------------ccccCccHHHHHHHHHhcCCHHHHHHHHh
Confidence 34456777778888888888888888888888776411 22223345688899999999999999888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 002795 339 QLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEE 397 (880)
Q Consensus 339 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~ 397 (880)
.=...|+-||.+|||.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 128 n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 128 NRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888999999999999999999999999999888888877666777777666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0064 Score=53.29 Aligned_cols=78 Identities=12% Similarity=0.304 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHcCCCccHHHHH
Q 002795 318 NAVLNACVPSHQWKGVFWVFKQLRKSGL-KPSAATYGLAMEVMLQSGK--------YDLVHEFFRKMAKSGEAIGALTYK 388 (880)
Q Consensus 318 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~g~--------~~~A~~l~~~m~~~g~~~d~~~~~ 388 (880)
...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- +-....+|+.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666777777777777777777 6777777777776654321 223444555555555555555555
Q ss_pred HHHHHHH
Q 002795 389 VLVRAFW 395 (880)
Q Consensus 389 ~Li~~~~ 395 (880)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 5554443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0065 Score=53.27 Aligned_cols=80 Identities=8% Similarity=0.213 Sum_probs=62.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHH
Q 002795 352 YGLAMEVMLQSGKYDLVHEFFRKMAKSGE-AIGALTYKVLVRAFWEEG--------KINEAVAAVRNMEQRGVVGTASVY 422 (880)
Q Consensus 352 ~~~ll~a~~~~g~~~~A~~l~~~m~~~g~-~~d~~~~~~Li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~t~ 422 (880)
-...|..|...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34466677777999999999999999998 888999999988887653 234567788888888888888888
Q ss_pred HHHHHHHHh
Q 002795 423 YELACCLCN 431 (880)
Q Consensus 423 ~~Li~~~~~ 431 (880)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888777654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.035 Score=55.90 Aligned_cols=168 Identities=17% Similarity=0.031 Sum_probs=122.5
Q ss_pred hhhhHHhHHHHhhh-hhhccchhhhHHhhhccccccCCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 002795 113 LRELKEMFEKDLNW-VLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEG 191 (880)
Q Consensus 113 l~~l~e~~~~~l~~-~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~ 191 (880)
+..|...++++++. -....++..+..|.+... ...+.++..+...+.+.-.++++...++..-+.++.
T Consensus 145 l~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~-----------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~ 213 (366)
T KOG2796|consen 145 LHKLKTVVSKILANLEQGLAEESSIRLWRKRLG-----------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQ 213 (366)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH-----------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHH
Confidence 34566666666653 344455667777755222 466788899988999999999999999977677888
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCcCC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 002795 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDK--RDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS 269 (880)
Q Consensus 192 ~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~--~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ 269 (880)
....|.+.-.+.|+.+.|...|+.+.+.... +...+..+.-.....|.-..++.+|...|.++... -+.|+..-|.
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--D~~~~~a~Nn 291 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--DPRNAVANNN 291 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcccc--CCCchhhhch
Confidence 8999999999999999999999977543221 11222233333344566678999999999999874 3456666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 002795 270 VAVTLGQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 270 ll~~~~~~g~~~~A~~l~~~m~~~ 293 (880)
-.-+..-.|+...|.+.++.|...
T Consensus 292 KALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 292 KALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 665666789999999999999984
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.028 Score=50.84 Aligned_cols=101 Identities=11% Similarity=0.070 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHH
Q 002795 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYP-DIAAYHSV 270 (880)
Q Consensus 192 ~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~p-d~~t~~~l 270 (880)
++..+...+.+.|++++|...|+.++...+.. .....++..+..++.+.|+++.|...|+.+.....-.| ...++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKS-TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34445555556666666666666665433211 11133445566666666666666666666654311111 13445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 002795 271 AVTLGQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 271 l~~~~~~g~~~~A~~l~~~m~~~ 293 (880)
..++.+.|+.++|...+.++...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 55566666666666666666554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.051 Score=58.08 Aligned_cols=89 Identities=15% Similarity=0.194 Sum_probs=43.4
Q ss_pred HhcC-CCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-----ccHH-HHHHH
Q 002795 324 CVPS-HQWKGVFWVFKQLRK----SGLKPS--AATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEA-----IGAL-TYKVL 390 (880)
Q Consensus 324 ~~~~-g~~~~A~~l~~~m~~----~g~~pd--~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~-----~d~~-~~~~L 390 (880)
|-.. |+++.|++.|.+... .| .+. ..++..+...+.+.|++++|..+|+++...-.. .++. .|-..
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 4444 566666666666542 12 111 223444556666777777777777766654221 1121 12222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 002795 391 VRAFWEEGKINEAVAAVRNMEQR 413 (880)
Q Consensus 391 i~~~~~~g~~~~A~~~~~~m~~~ 413 (880)
+-++...|+...|.+.|++....
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 33445556666777776666544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.016 Score=61.86 Aligned_cols=96 Identities=16% Similarity=0.086 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 002795 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (880)
Q Consensus 192 ~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll 271 (880)
+|..+++.+-+.+..+.|+.+|..+.+... ...++++..+++. |...++.+.|.++|+...+. ++.+...|..-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALME-YYCNKDPKRARKIFERGLKK--FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence 444555555555555555555555542211 1122222222222 11123444455555555543 333444444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 002795 272 VTLGQVGLLKELVKLIERMRQ 292 (880)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~ 292 (880)
..+...|+.+.|..+|++...
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~ 98 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAIS 98 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCC
T ss_pred HHHHHhCcHHHHHHHHHHHHH
Confidence 555555555555555555544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.014 Score=49.43 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=7.6
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 002795 237 ILGKAGRPHEALRIFNLML 255 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~ 255 (880)
.+...|++++|..+|+...
T Consensus 9 ~~~~~~~~~~A~~~~~~~~ 27 (100)
T cd00189 9 LYYKLGDYDEALEYYEKAL 27 (100)
T ss_pred HHHHHhcHHHHHHHHHHHH
Confidence 3333344444444444433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.028 Score=50.91 Aligned_cols=94 Identities=17% Similarity=0.190 Sum_probs=40.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 002795 354 LAMEVMLQSGKYDLVHEFFRKMAKSGE--AIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVG--TASVYYELACCL 429 (880)
Q Consensus 354 ~ll~a~~~~g~~~~A~~l~~~m~~~g~--~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~Li~~~ 429 (880)
.+...+.+.|++++|...|..+..... +.....+..+..++.+.|+++.|...|+.+....... ....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 344444445555555555555544321 0012233334444555555555555555444432211 122233344444
Q ss_pred HhCCCHHHHHHHHHHHHh
Q 002795 430 CNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 430 ~~~g~~~~A~~l~~~m~~ 447 (880)
.+.|+.++|...++++..
T Consensus 87 ~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHhCChHHHHHHHHHHHH
Confidence 444555555555444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.015 Score=61.90 Aligned_cols=132 Identities=13% Similarity=0.099 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCC
Q 002795 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308 (880)
Q Consensus 229 ~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~ 308 (880)
.+|..++...-+.+..+.|+.+|.+..+......+++...+++.. ...++.+.|.++|+...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~--------------- 65 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK--------------- 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH---------------
Confidence 355566666666666666666666665432223333333333322 2234445566666666554
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 002795 309 VLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS---AATYGLAMEVMLQSGKYDLVHEFFRKMAKS 378 (880)
Q Consensus 309 ~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~ 378 (880)
...+...|...+..+...++.+.|..+|+..... +.++ ...|...+..=.+.|+++.+..+.+++.+.
T Consensus 66 -f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 66 -FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp -HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666544 2221 135555555556666666666666665554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.017 Score=48.88 Aligned_cols=94 Identities=21% Similarity=0.225 Sum_probs=56.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 002795 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV 272 (880)
Q Consensus 193 ~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~ 272 (880)
+..+...+...|++++|..+++.+++..+ .+..++..+...+...|++++|.+.|+..... .+.+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 76 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP----DNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHH
Confidence 33445555566666677766666655432 23355666666666667777777777666553 2333445666666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 002795 273 TLGQVGLLKELVKLIERMRQ 292 (880)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~ 292 (880)
.+...|+++.|...+.....
T Consensus 77 ~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 77 AYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHhHHHHHHHHHHHHc
Confidence 66666777777766666554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.016 Score=57.20 Aligned_cols=87 Identities=21% Similarity=0.269 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc----------------CCHHHHHHH
Q 002795 348 SAATYGLAMEVMLQ-----SGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEE----------------GKINEAVAA 406 (880)
Q Consensus 348 d~~t~~~ll~a~~~-----~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~----------------g~~~~A~~~ 406 (880)
|..+|..++..+.+ .|..+-....+..|.+-|+..|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44444444444432 233444444444455555555555555555444321 224567888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 002795 407 VRNMEQRGVVGTASVYYELACCLCNNGR 434 (880)
Q Consensus 407 ~~~m~~~g~~p~~~t~~~Li~~~~~~g~ 434 (880)
+++|...|+.||..|+..++..+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888887766554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.022 Score=56.25 Aligned_cols=86 Identities=20% Similarity=0.305 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCC--------
Q 002795 262 PDIAAYHSVAVTLGQV-----GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSH-------- 328 (880)
Q Consensus 262 pd~~t~~~ll~~~~~~-----g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g-------- 328 (880)
.|-.+|..++..|.+. |.++-....+..|.+.| +..|..+|+.||+.+=+..
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efg---------------v~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFG---------------VEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcC---------------CcccHHHHHHHHHhCCCCCcccccHHH
Confidence 3566666666666533 56666666777777776 7777777777777655421
Q ss_pred --------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002795 329 --------QWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQS 362 (880)
Q Consensus 329 --------~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 362 (880)
+-+-|++++++|...|+.||..|+..++..+.+.
T Consensus 110 ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 110 AEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 2233444444444444444444444444444433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.032 Score=61.71 Aligned_cols=104 Identities=8% Similarity=-0.106 Sum_probs=86.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHH
Q 002795 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILG 239 (880)
Q Consensus 160 ~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~ 239 (880)
.-...+...|++++|+.+|+...+.. +-+...|..+..+|...|++++|...++.++...+ .+..+|..+..+|.
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P----~~~~a~~~lg~~~~ 81 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP----SLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CCHHHHHHHHHHHH
Confidence 34566778899999999999999877 56788899999999999999999999999988765 56788999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 002795 240 KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (880)
Q Consensus 240 ~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll 271 (880)
..|++++|+..|+...+. .|+......++
T Consensus 82 ~lg~~~eA~~~~~~al~l---~P~~~~~~~~l 110 (356)
T PLN03088 82 KLEEYQTAKAALEKGASL---APGDSRFTKLI 110 (356)
T ss_pred HhCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 999999999999999873 45544444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.17 Score=54.09 Aligned_cols=213 Identities=14% Similarity=0.118 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHH
Q 002795 155 AEAIRVLVDRLSEREMTAKNWKFVRIMNQ----SGLMF-TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF 229 (880)
Q Consensus 155 ~~~~~~li~~l~~~~~~~~A~~l~~~m~~----~g~~~-~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~ 229 (880)
.+.|......+...+++++|...|..... .+-+. ....|......|.+ +++++|...++
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~--------------- 98 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYE--------------- 98 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHH---------------
Confidence 34566777777778888888877766543 22111 11223333333322 25555554444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCchhHhhhhhhcCCC
Q 002795 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV-GLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308 (880)
Q Consensus 230 ~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~-g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~ 308 (880)
..+..|...|++..|-+++..+-+ .|... |++++|.+.|.+....- ..- .
T Consensus 99 ---~A~~~y~~~G~~~~aA~~~~~lA~----------------~ye~~~~d~e~Ai~~Y~~A~~~y--------~~e--~ 149 (282)
T PF14938_consen 99 ---KAIEIYREAGRFSQAAKCLKELAE----------------IYEEQLGDYEKAIEYYQKAAELY--------EQE--G 149 (282)
T ss_dssp ---HHHHHHHHCT-HHHHHHHHHHHHH----------------HHCCTT--HHHHHHHHHHHHHHH--------HHT--T
T ss_pred ---HHHHHHHhcCcHHHHHHHHHHHHH----------------HHHHHcCCHHHHHHHHHHHHHHH--------HHC--C
Confidence 445677788888887777776654 36666 88999998888876531 000 0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcC--C
Q 002795 309 VLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK-----PSAA-TYGLAMEVMLQSGKYDLVHEFFRKMAKSG--E 380 (880)
Q Consensus 309 ~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~-----pd~~-t~~~ll~a~~~~g~~~~A~~l~~~m~~~g--~ 380 (880)
....-..++..+...+.+.|++++|..+|++....-+. .+.. .|-..+-++...||+..|...++...... +
T Consensus 150 ~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 150 SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 00111234566777899999999999999998765332 2222 23334456677899999999999987653 2
Q ss_pred --CccHHHHHHHHHHHHhc--CCHHHHHHHHHHHHH
Q 002795 381 --AIGALTYKVLVRAFWEE--GKINEAVAAVRNMEQ 412 (880)
Q Consensus 381 --~~d~~~~~~Li~~~~~~--g~~~~A~~~~~~m~~ 412 (880)
.........||.+|-.. ..+..|+.-|+.+.+
T Consensus 230 ~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 230 ASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp TTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred CCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 22345666677776542 346667776665543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.045 Score=60.53 Aligned_cols=91 Identities=14% Similarity=-0.009 Sum_probs=79.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 002795 197 LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (880)
Q Consensus 197 l~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~ 276 (880)
...+...|+++.|+..|+.+++..+ .+...|..+..+|.+.|++++|+..++..... -+.+...|..+..+|..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P----~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP----NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHH
Confidence 4556678999999999999998765 56789999999999999999999999999874 33467788999999999
Q ss_pred cCCHHHHHHHHHHHHhC
Q 002795 277 VGLLKELVKLIERMRQK 293 (880)
Q Consensus 277 ~g~~~~A~~l~~~m~~~ 293 (880)
.|++++|...|+...+.
T Consensus 83 lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 83 LEEYQTAKAALEKGASL 99 (356)
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 99999999999999884
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.55 E-value=1.1 Score=52.13 Aligned_cols=324 Identities=14% Similarity=0.168 Sum_probs=182.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 002795 159 RVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGS---WRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (880)
Q Consensus 159 ~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~---~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll 235 (880)
..+++.+...+.|..|.++-..|...-..- ...|.....-+.+..+ -+.+..+-+++ .. . .....+|..+.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kl-s~--~--~~~~iSy~~iA 514 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKL-SA--K--LTPGISYAAIA 514 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHh-cc--c--CCCceeHHHHH
Confidence 466778888888888888877765322112 5666666666665532 22233332222 11 1 13345677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCC
Q 002795 236 AILGKAGRPHEALRIFNLMLEDCNLYP---DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP 312 (880)
Q Consensus 236 ~~~~~~g~~~~A~~lf~~m~~~~g~~p---d~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~p 312 (880)
.-.-.+|+++-|..+++.=.....-.| +..-+...+.-+...|+.+-...++-.|...-..+...|. +-+ .+-
T Consensus 515 ~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~--l~~--~p~ 590 (829)
T KOG2280|consen 515 RRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT--LRN--QPL 590 (829)
T ss_pred HHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH--HHh--chh
Confidence 777788888888888776433211111 2233556666677778877777777766654211100000 000 111
Q ss_pred CHHHHHHHHH--------HHhcCCCHHHHHHHHH--HHH----HCCCCCCHHHHHHHHHHHHHcCChHH-H---------
Q 002795 313 DLVVYNAVLN--------ACVPSHQWKGVFWVFK--QLR----KSGLKPSAATYGLAMEVMLQSGKYDL-V--------- 368 (880)
Q Consensus 313 d~~ty~~ll~--------~~~~~g~~~~A~~l~~--~m~----~~g~~pd~~t~~~ll~a~~~~g~~~~-A--------- 368 (880)
....|--+++ .+-+.++-..+...|. ... ..|..|+. .....+|++...... +
T Consensus 591 a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kL 667 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKL 667 (829)
T ss_pred hhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 2222322222 1111222222222111 100 12333333 334455555444221 1
Q ss_pred HHHHHHHHH-cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002795 369 HEFFRKMAK-SGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 369 ~~l~~~m~~-~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
.++.+.+.. .|....--+.+--+.-+...|+..+|.++-.+.+ .||-..|-.=+.+++..++|++-.++-+.++.
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks 743 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS 743 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC
Confidence 112222221 1222333455556666778899889888776654 57777788888999999999987666544432
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002795 448 LRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEE 514 (880)
Q Consensus 448 ~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~ 514 (880)
+..|...+.+|.+.|+.++|.+++.+... .. -...+|.+.|++.+|.++--+
T Consensus 744 -------PIGy~PFVe~c~~~~n~~EA~KYiprv~~----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 744 -------PIGYLPFVEACLKQGNKDEAKKYIPRVGG----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred -------CCCchhHHHHHHhcccHHHHhhhhhccCC----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 45788889999999999999999887654 11 578899999999999887544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.2 Score=58.00 Aligned_cols=139 Identities=11% Similarity=-0.031 Sum_probs=86.5
Q ss_pred CCCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC--------CHHHHHHH
Q 002795 184 SGLMFTEGQMLKLLKGLGDK-----GSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG--------RPHEALRI 250 (880)
Q Consensus 184 ~g~~~~~~~~~~ll~~~~~~-----g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g--------~~~~A~~l 250 (880)
.+.+.+...|...+++.... +....|..+|+++++..| ....+|..+..+|.... +...+.+.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP----~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP----DFTYAQAEKALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 44467888888888876543 237789999999988654 34455555544443221 12233333
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCH
Q 002795 251 FNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQW 330 (880)
Q Consensus 251 f~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~ 330 (880)
............+...|.++.-.+...|++++|...+++... ..|+...|..+...|...|+.
T Consensus 407 ~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~-----------------L~ps~~a~~~lG~~~~~~G~~ 469 (517)
T PRK10153 407 LDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID-----------------LEMSWLNYVLLGKVYELKGDN 469 (517)
T ss_pred HHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------------cCCCHHHHHHHHHHHHHcCCH
Confidence 333322111233456666665555566777777777777776 445677777777777777777
Q ss_pred HHHHHHHHHHHHC
Q 002795 331 KGVFWVFKQLRKS 343 (880)
Q Consensus 331 ~~A~~l~~~m~~~ 343 (880)
++|.+.|++....
T Consensus 470 ~eA~~~~~~A~~L 482 (517)
T PRK10153 470 RLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.23 Score=47.68 Aligned_cols=137 Identities=14% Similarity=0.062 Sum_probs=108.2
Q ss_pred CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHH
Q 002795 151 WRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV 230 (880)
Q Consensus 151 ~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~ 230 (880)
.-|.+..-..|...+.+.|++.+|...|++...--+..|......+.++....+++..|...++.+.+..+..-.||..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~- 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH- 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch-
Confidence 3455566678889999999999999999998865456788999999999999999999999999998888776666643
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002795 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQ 292 (880)
Q Consensus 231 ~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~ 292 (880)
-.+...|...|++..|..-|+..... .|+......-...+.+.|+.+++..-+..+.+
T Consensus 164 -Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 -LLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred -HHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 46677888899999999999999874 57765544445556788888777665555443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.16 Score=48.02 Aligned_cols=99 Identities=9% Similarity=0.068 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 002795 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (880)
Q Consensus 156 ~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll 235 (880)
+....+...+...|++++|..+|+.+.... +-+..-|..|.-.+-..|++.+|...|..+....+ .|+..+-.+.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~----ddp~~~~~ag 110 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI----DAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----CCchHHHHHH
Confidence 344455666778888888888888888776 45666677777778888888888888888877654 4666777788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Q 002795 236 AILGKAGRPHEALRIFNLMLEDCN 259 (880)
Q Consensus 236 ~~~~~~g~~~~A~~lf~~m~~~~g 259 (880)
.++...|+.+.|++.|+.....++
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhc
Confidence 888888888888888888777543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.27 E-value=2.2 Score=46.12 Aligned_cols=126 Identities=13% Similarity=0.118 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002795 491 TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQL 570 (880)
Q Consensus 491 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~p 570 (880)
+.+..|.-+...|+...|.++-.+.. .||..-|...|.+++..++|++-.++... .-
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----------------v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kK 235 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK-----------------VPDKRFWWLKIKALAENKDWDELEKFAKS------KK 235 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC-----------------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CC
Confidence 45555666777888888888766652 38888888999999999999877665332 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHH
Q 002795 571 DQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFE 650 (880)
Q Consensus 571 d~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~ 650 (880)
.+.-|..++.+|.+.|...+|..+..++ + +..-+..|.+.|.+.+|.+.--+.. |...+..+..
T Consensus 236 sPIGyepFv~~~~~~~~~~eA~~yI~k~------~----~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~ 299 (319)
T PF04840_consen 236 SPIGYEPFVEACLKYGNKKEASKYIPKI------P----DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILK 299 (319)
T ss_pred CCCChHHHHHHHHHCCCHHHHHHHHHhC------C----hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHH
Confidence 3466778888888889988888888772 2 2456777888888888887766553 4445555555
Q ss_pred Hhhhc
Q 002795 651 SNEDR 655 (880)
Q Consensus 651 a~~~~ 655 (880)
.|...
T Consensus 300 ~~~~~ 304 (319)
T PF04840_consen 300 RCPGN 304 (319)
T ss_pred HCCCC
Confidence 55443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.26 E-value=2.2 Score=46.10 Aligned_cols=106 Identities=12% Similarity=0.224 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 002795 386 TYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISS 465 (880)
Q Consensus 386 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~ 465 (880)
+.+..|.-+...|+...|.++-.+. -+|+...|...+.+|+..++|++-..+... +-.++.|-.++.+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHH
Confidence 4455566677788887777775554 257888888889999999998876655321 12346788888889
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002795 466 MDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKEL 511 (880)
Q Consensus 466 ~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l 511 (880)
.+.|+..+|..+...+. +..-+..|.++|++.+|.+.
T Consensus 248 ~~~~~~~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP---------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHCCCHHHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHH
Confidence 99999888888877732 24567778888888888664
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.16 Score=49.78 Aligned_cols=87 Identities=11% Similarity=-0.060 Sum_probs=67.6
Q ss_pred CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHH
Q 002795 153 SEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFT--EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV 230 (880)
Q Consensus 153 ~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~ 230 (880)
.....+..+...+...|++++|...|+...+....+. ...+..+...+.+.|++++|...++.++...+ .+...
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~ 108 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP----KQPSA 108 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----ccHHH
Confidence 3445667777888889999999999999887543222 46788888999999999999999999987644 35667
Q ss_pred HHHHHHHHHHcCC
Q 002795 231 YTKLLAILGKAGR 243 (880)
Q Consensus 231 ~~~Ll~~~~~~g~ 243 (880)
+..+...|...|+
T Consensus 109 ~~~lg~~~~~~g~ 121 (172)
T PRK02603 109 LNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHcCC
Confidence 7777888887776
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.055 Score=55.97 Aligned_cols=101 Identities=17% Similarity=0.123 Sum_probs=81.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHH
Q 002795 498 VYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKH 575 (880)
Q Consensus 498 ~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~ 575 (880)
-+.+.+++.+|+..|.+.+. +.| |.+-|..-..+|.+.|.++.|.+-.+..+. +.|. ..+|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---------------l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay 152 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---------------LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAY 152 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---------------cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHH
Confidence 35678999999999999998 456 777788888899999999999888777664 5555 6688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002795 576 AWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQA 617 (880)
Q Consensus 576 ~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 617 (880)
..|-.+|...|++++|.+.|.+.++ +.|+..+|..-+...
T Consensus 153 ~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 153 GRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 8899999999999999999998877 558888887555444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.3 Score=46.20 Aligned_cols=98 Identities=10% Similarity=0.027 Sum_probs=74.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 002795 354 LAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNG 433 (880)
Q Consensus 354 ~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g 433 (880)
.+..-+...|++++|.++|+.+.... +-+..-|-.|..++-..|++.+|+..|......++. +...+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence 34445568899999999998888875 345677777888888889999999999888877753 4555556788888899
Q ss_pred CHHHHHHHHHHHHhcCCCCC
Q 002795 434 RWQDAMLVVEKIKSLRHSKP 453 (880)
Q Consensus 434 ~~~~A~~l~~~m~~~~~~~p 453 (880)
+.+.|...|+......+..|
T Consensus 118 ~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 118 NVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred CHHHHHHHHHHHHHHhccCh
Confidence 99999888888776444444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.012 Score=50.03 Aligned_cols=48 Identities=19% Similarity=0.447 Sum_probs=23.4
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 002795 397 EGKINEAVAAVRNMEQRGVV-GTASVYYELACCLCNNGRWQDAMLVVEK 444 (880)
Q Consensus 397 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~Li~~~~~~g~~~~A~~l~~~ 444 (880)
.|+++.|+.+|+++.+.... ++...+..+..+|.+.|++++|+.+++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34555555555555554432 1233333355555555555555555554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.11 Score=50.66 Aligned_cols=96 Identities=11% Similarity=-0.059 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcC
Q 002795 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (880)
Q Consensus 228 ~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~p-d~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f 306 (880)
...|..+...+...|++++|+..|+.......-++ ...+|..+...+...|++++|...++.....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~------------- 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER------------- 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Confidence 34566666666777777777777777765311111 1346677777777777888777777777654
Q ss_pred CCCCCCCHHHHHHHHHHHh-------cCCCHHHHHHHHHH
Q 002795 307 DPVLEPDLVVYNAVLNACV-------PSHQWKGVFWVFKQ 339 (880)
Q Consensus 307 ~~~~~pd~~ty~~ll~~~~-------~~g~~~~A~~l~~~ 339 (880)
.+....+++.+...+. ..|+++.|+..+.+
T Consensus 102 ---~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 102 ---NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred ---CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 2333444555555554 55666655444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.21 Score=48.88 Aligned_cols=113 Identities=14% Similarity=0.173 Sum_probs=73.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC-HHHHH
Q 002795 383 GALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT--ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-EITFT 459 (880)
Q Consensus 383 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-~~t~~ 459 (880)
....+..+...|...|++++|...|++....+..+. ...+..+..++.+.|++++|...+.+... ..|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 355677777788888888888888888876544332 34567777778888888888888887776 2333 33445
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 460 GLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 460 ~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
.+...+...|+...+..-+.... ..+++|.+++++....
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~--------------------~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE--------------------ALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH--------------------HHHHHHHHHHHHHHhh
Confidence 55555666666555443333221 1257777888877763
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.013 Score=49.68 Aligned_cols=81 Identities=21% Similarity=0.441 Sum_probs=40.8
Q ss_pred cCChHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 002795 362 SGKYDLVHEFFRKMAKSGEA-IGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAML 440 (880)
Q Consensus 362 ~g~~~~A~~l~~~m~~~g~~-~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~ 440 (880)
.|+++.|..+++++.+.... ++...+..+..+|.+.|++++|..+++. ...+.. +......+..+|.+.|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666655321 1333444456666666666666666655 222211 12222334555666666666666
Q ss_pred HHHH
Q 002795 441 VVEK 444 (880)
Q Consensus 441 l~~~ 444 (880)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.27 Score=44.75 Aligned_cols=111 Identities=17% Similarity=0.153 Sum_probs=79.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH
Q 002795 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFT--EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI 237 (880)
Q Consensus 160 ~li~~l~~~~~~~~A~~l~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~ 237 (880)
.+...+-..|+.++|+.+|+.....|.... ...+..+...+...|++++|..+++......+... .+......+.-+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~-~~~~l~~f~Al~ 84 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE-LNAALRVFLALA 84 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-ccHHHHHHHHHH
Confidence 445666678999999999999999886544 35677788888999999999999998876543311 122333334446
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 002795 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (880)
Q Consensus 238 ~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~ 276 (880)
+...|+.++|+..+-.... ++...|.--|..|+.
T Consensus 85 L~~~gr~~eAl~~~l~~la-----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA-----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHh
Confidence 7888999999998877665 245566666666543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.02 E-value=4.1 Score=46.90 Aligned_cols=66 Identities=11% Similarity=-0.089 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 002795 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIA--------AYHSVAVTLGQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 226 ~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~--------t~~~ll~~~~~~g~~~~A~~l~~~m~~~ 293 (880)
|.+..|..|.......-.++-|...|-+...-.|++---. .-.+=+.+ --|.+++|.++|-+|-++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR 763 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh
Confidence 6677888888777776677777777766543222211000 00111122 247788888887777554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.32 Score=56.39 Aligned_cols=137 Identities=12% Similarity=0.050 Sum_probs=80.3
Q ss_pred CccHHHHHHHHHHHHhc--C---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHh
Q 002795 381 AIGALTYKVLVRAFWEE--G---KINEAVAAVRNMEQRGVVGTASVYYELACCLCNN--------GRWQDAMLVVEKIKS 447 (880)
Q Consensus 381 ~~d~~~~~~Li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~--------g~~~~A~~l~~~m~~ 447 (880)
+.|...|...+.+.... + ....|..+|++..+.++. ....|..+..++... .++..+.....+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 44555555555553322 1 244566666666555432 223333332222211 112233333333332
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002795 448 LRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 519 (880)
Q Consensus 448 ~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 519 (880)
......+...+..+.-.....|++++|...+++..... |+...|..+...|...|+.++|.+.|++.....
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE-MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 11233344566666555666799999999999988733 578889999999999999999999999988843
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.2 Score=52.20 Aligned_cols=114 Identities=12% Similarity=0.067 Sum_probs=85.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHhh
Q 002795 405 AAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT-FTGLIISSMDGGHIDDCISIFQHMKD 483 (880)
Q Consensus 405 ~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t-~~~ll~a~~~~g~~~~A~~i~~~m~~ 483 (880)
.-++.-...++. |...|-.|...|...|+...|...|.+..+..+.+|+... |...+..-.......++..+|+++..
T Consensus 143 a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 143 ARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 333444444433 6777999999999999999999999998886665555432 33333333334456788999999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002795 484 HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 519 (880)
Q Consensus 484 ~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 519 (880)
..+-|+.+..-|...+...|++.+|...|+.|.+..
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 777888888888899999999999999999999964
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.18 Score=47.75 Aligned_cols=117 Identities=18% Similarity=0.179 Sum_probs=67.1
Q ss_pred HhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 002795 201 GDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLL 280 (880)
Q Consensus 201 ~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~ 280 (880)
...|+...+...++.++..-.....++... ..-......-++.+.- .+...++..+...|++
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~~--------~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELYL--------DALERLAEALLEAGDY 78 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHHH--------HHHHHHHHHHHHTT-H
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHHH--------HHHHHHHHHHHhccCH
Confidence 455677777777777665432222222111 1122223333333322 2455566677788888
Q ss_pred HHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 002795 281 KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLR-----KSGLKPSAAT 351 (880)
Q Consensus 281 ~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~-----~~g~~pd~~t 351 (880)
++|..+...+... .+-|...|..+|.+|...|+...|+++|+.+. +.|+.|+..+
T Consensus 79 ~~a~~~~~~~l~~----------------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 79 EEALRLLQRALAL----------------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHH----------------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 8888888888775 56677888888888888888888888888774 3588887765
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.03 Score=45.15 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=45.3
Q ss_pred HhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 002795 201 GDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (880)
Q Consensus 201 ~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll 271 (880)
...|++++|.++|+.++...| .+..++..+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP----DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT----TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHHH
Confidence 356778888888888876654 46677778888888888888888888888764 46655554443
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.026 Score=45.50 Aligned_cols=54 Identities=17% Similarity=0.345 Sum_probs=43.5
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002795 466 MDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 519 (880)
Q Consensus 466 ~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 519 (880)
.+.|++++|..+|+.+....+.+...+..+..+|.+.|++++|..+++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 456888888888888887666788888888888888888888888888888854
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=4.6 Score=46.53 Aligned_cols=206 Identities=12% Similarity=0.050 Sum_probs=130.8
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHH----------HHcCCHHHHHHHHHHHHH
Q 002795 187 MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAIL----------GKAGRPHEALRIFNLMLE 256 (880)
Q Consensus 187 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~----------~~~g~~~~A~~lf~~m~~ 256 (880)
.|.+..|..+.......-.++.|...|-+.-.. +.+.....|-..+ +-.|++++|.++|-+|-+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY------~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr 762 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY------AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR 762 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc------cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch
Confidence 578888888887777767777777776544211 1221111111111 224899999999999877
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 002795 257 DCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWV 336 (880)
Q Consensus 257 ~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l 336 (880)
+ | ..|..+.+.|++-...++++.--... ....-...|+.+...++....|++|.+.
T Consensus 763 r-----D-----LAielr~klgDwfrV~qL~r~g~~d~--------------dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 763 R-----D-----LAIELRKKLGDWFRVYQLIRNGGSDD--------------DDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred h-----h-----hhHHHHHhhhhHHHHHHHHHccCCCc--------------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 3 33556677788876666554321110 0222345788888888888889999988
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002795 337 FKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVV 416 (880)
Q Consensus 337 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~ 416 (880)
|..-. +. ...+.++.+..++++-+.+...+ +-|....-.|..++.+.|.-++|++.|-+ .+.
T Consensus 819 Y~~~~------~~---e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~- 880 (1189)
T KOG2041|consen 819 YSYCG------DT---ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL- 880 (1189)
T ss_pred HHhcc------ch---HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh---ccC-
Confidence 87643 21 23566677766666665555444 33556677788999999999999887743 222
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002795 417 GTASVYYELACCLCNNGRWQDAMLVVEKI 445 (880)
Q Consensus 417 p~~~t~~~Li~~~~~~g~~~~A~~l~~~m 445 (880)
|- ..+.+|....+|.+|.++-++.
T Consensus 881 pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 881 PK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred cH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 21 2355677788888888876654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.84 E-value=3.2 Score=44.20 Aligned_cols=224 Identities=11% Similarity=0.123 Sum_probs=113.4
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHhCC-CHHHHHHHHHHHHhc-------CCCCCCH---
Q 002795 395 WEEGKINEAVAAVRNMEQRG--VVGTA------SVYYELACCLCNNG-RWQDAMLVVEKIKSL-------RHSKPLE--- 455 (880)
Q Consensus 395 ~~~g~~~~A~~~~~~m~~~g--~~p~~------~t~~~Li~~~~~~g-~~~~A~~l~~~m~~~-------~~~~p~~--- 455 (880)
.+.|+++.|..++.+..... ..|+. ..|+.-. .....+ ++++|..++++..+. ....|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~-~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGK-SLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHH-HHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 34566666666665554332 12211 1233222 233444 666666666654431 1223333
Q ss_pred --HHHHHHHHHHHhCCCHH---HHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCC
Q 002795 456 --ITFTGLIISSMDGGHID---DCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDG 530 (880)
Q Consensus 456 --~t~~~ll~a~~~~g~~~---~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~ 530 (880)
.++..++.+|...+..+ +|..+.+.+....+-.+.++-.-+..+.+.++.+++.+.+.+|...-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~----------- 151 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV----------- 151 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-----------
Confidence 34566677777766654 45555556655333345555556666777888888888888888852
Q ss_pred CCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH---HHcC------CHHHHHHHHHH
Q 002795 531 APLKPDEYTYSSMLEASATA--HQWEYFEYVYKGMALSGCQLDQT--KHAWLLVEA---SRAG------KCHLLEHAFDS 597 (880)
Q Consensus 531 ~~~~Pd~~t~~~ll~a~~~~--~~~~~A~~l~~~m~~~g~~pd~~--~~~~ll~~~---~~~G------~~~~A~~~~~~ 597 (880)
.-....+..++..+-.. .....+...+..++...+.|... .-..++... ...+ +++....+++.
T Consensus 152 ---~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~ 228 (278)
T PF08631_consen 152 ---DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSI 228 (278)
T ss_pred ---ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHH
Confidence 22344555555544222 33345666666666555665543 212222221 1111 14445455553
Q ss_pred HHHC-CCCCCHHH-------HHHHHHHHHHhCCHHHHHHHHHHh
Q 002795 598 LLEA-GEIPHPLF-------FTEMLIQAIVQSNYEKAVALINAM 633 (880)
Q Consensus 598 m~~~-g~~p~~~~-------~~~ll~~~~~~g~~~~A~~l~~~m 633 (880)
+... +...+..+ .+.....+++.+++++|...|+-.
T Consensus 229 v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 229 VEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 3321 11122221 112355566777888888877743
|
It is also involved in sporulation []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.77 E-value=1.7 Score=42.03 Aligned_cols=144 Identities=13% Similarity=0.085 Sum_probs=102.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCCHHH
Q 002795 345 LKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGV---VGTASV 421 (880)
Q Consensus 345 ~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~t 421 (880)
..|++..--.|..+....|++.+|...|.+...--+..|....-.+.++....+++..|...++.+.+.+. .||..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~- 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH- 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch-
Confidence 46777777778888899999999999999887755667888888888888889999999999988877642 44443
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHH
Q 002795 422 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVN 493 (880)
Q Consensus 422 ~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~ 493 (880)
-.+...|...|++.+|...|+.... ..|+...-.-.-..+.+.|+.+++..-+..+.+....+..+|.
T Consensus 164 -Ll~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~r 231 (251)
T COG4700 164 -LLFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYR 231 (251)
T ss_pred -HHHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchhHH
Confidence 3467778889999999999998877 4555544333334456777776666555544443223444444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.2 Score=48.77 Aligned_cols=81 Identities=5% Similarity=0.007 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHH
Q 002795 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP--SAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLV 391 (880)
Q Consensus 314 ~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li 391 (880)
...|..+...+...|++++|+..|++.......| ...++..+..++...|++++|...++...... +....+++.+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4455666666777788888888877776543222 12466667777777777777777777777653 23344555555
Q ss_pred HHHH
Q 002795 392 RAFW 395 (880)
Q Consensus 392 ~~~~ 395 (880)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=3.1 Score=43.18 Aligned_cols=62 Identities=10% Similarity=0.032 Sum_probs=36.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhCCCHHHHHHHHHHHHhCcCC
Q 002795 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQM---LKLLKGLGDKGSWRQAMSVLDWVYGLKDK 222 (880)
Q Consensus 160 ~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~---~~ll~~~~~~g~~~~A~~l~~~~~~~~~~ 222 (880)
.....+...|++++|...|+.+...- +-+.... ..+..++-+.++++.|...++..++..|.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 34444455677777777777766543 2222222 34455666667777777777777666554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.69 E-value=2 Score=43.32 Aligned_cols=175 Identities=14% Similarity=0.133 Sum_probs=91.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 002795 356 MEVMLQSGKYDLVHEFFRKMAKSGE--AIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNG 433 (880)
Q Consensus 356 l~a~~~~g~~~~A~~l~~~m~~~g~--~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g 433 (880)
...+...|++.+|...|+.+..... +.-....-.++.+|.+.|+++.|...|+...+.-+.....-+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3345567777777777777776521 12233445566777777777777777777766544322222333333322111
Q ss_pred CHHHHHHHHHHHHhcCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002795 434 RWQDAMLVVEKIKSLRHSKPL-----EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKA 508 (880)
Q Consensus 434 ~~~~A~~l~~~m~~~~~~~p~-----~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A 508 (880)
.....+ . ....+. ...|..++.-|=.+....+|...+..+.+. =...--.+...|.+.|.+..|
T Consensus 92 ~~~~~~-------~-~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 92 QIPGIL-------R-SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHELYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHHHHH---------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHHHHHHHHHHCTT-HHHH
T ss_pred hCccch-------h-cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcccHHHH
Confidence 111110 0 000000 123455555555666666666666655541 111222356778888899999
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCCCCCH----HHHHHHHHHHHHcCCHHHH
Q 002795 509 KELFEETTRANSSGYTFLSGDGAPLKPDE----YTYSSMLEASATAHQWEYF 556 (880)
Q Consensus 509 ~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~----~t~~~ll~a~~~~~~~~~A 556 (880)
..-|+.+++.- |+. .....++.+|.+.|..+.+
T Consensus 161 ~~r~~~v~~~y---------------p~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 161 IIRFQYVIENY---------------PDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHS---------------TTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHC---------------CCCchHHHHHHHHHHHHHHhCChHHH
Confidence 99888888864 543 3556777777777776644
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.22 Score=53.33 Aligned_cols=288 Identities=14% Similarity=0.020 Sum_probs=142.8
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhC--cCCCCCCCHHHHHHHHH
Q 002795 163 DRLSEREMTAKNWKFVRIMNQSGLMFTE----GQMLKLLKGLGDKGSWRQAMSVLDWVYGL--KDKRDLKSRFVYTKLLA 236 (880)
Q Consensus 163 ~~l~~~~~~~~A~~l~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~A~~l~~~~~~~--~~~~~~~d~~~~~~Ll~ 236 (880)
..||+.|+.+..+.+|+...+.|. -|. ..|..|..+|.-.+++++|++.+..=+.. ..........+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 589999999999999999999884 444 45667777888888999999887532110 00000011122223333
Q ss_pred HHHHcCCHHHHHHHHHHHHH---cCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCC
Q 002795 237 ILGKAGRPHEALRIFNLMLE---DCNL-YPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP 312 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~~---~~g~-~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~p 312 (880)
.+--.|.+++|+-.-.+-.. ..|- .....++-.+...|...|+. +..-.+.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~-------------------------~g~~~pe 158 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKC-------------------------TGLEAPE 158 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccc-------------------------cCCCChh
Confidence 34444566665543222110 0000 00111222233333332221 0000010
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHH----HHCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----C-CCc
Q 002795 313 DLVVYNAVLNACVPSHQWKGVFWVFKQL----RKSGLK-PSAATYGLAMEVMLQSGKYDLVHEFFRKMAKS----G-EAI 382 (880)
Q Consensus 313 d~~ty~~ll~~~~~~g~~~~A~~l~~~m----~~~g~~-pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~----g-~~~ 382 (880)
+.-.++.=+. ..++.|.++|.+= .+.|-. .-...|..|-+.|.-.|+++.|...++.-+.. | -..
T Consensus 159 e~g~f~~ev~-----~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAa 233 (639)
T KOG1130|consen 159 EKGAFNAEVT-----SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAA 233 (639)
T ss_pred hcccccHHHH-----HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHH
Confidence 1111111111 1123333333321 111110 11234666666677778888888777654322 2 112
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----cCCCCC
Q 002795 383 GALTYKVLVRAFWEEGKINEAVAAVRNMEQR----GV-VGTASVYYELACCLCNNGRWQDAMLVVEKIKS----LRHSKP 453 (880)
Q Consensus 383 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~----~~~~~p 453 (880)
....+..|.++|.-.|+++.|.+.|+.-... |- .....+..+|..+|.-...++.|+.++.+-.. .....-
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456777888888888888888888764422 11 11223344566666666666666666554322 111112
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002795 454 LEITFTGLIISSMDGGHIDDCISIFQHM 481 (880)
Q Consensus 454 ~~~t~~~ll~a~~~~g~~~~A~~i~~~m 481 (880)
...+|-+|-.+|...|..++|..+.+.-
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 2344555666666666666665555443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=3.4 Score=42.92 Aligned_cols=179 Identities=15% Similarity=0.097 Sum_probs=101.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCccHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002795 355 AMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTY---KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431 (880)
Q Consensus 355 ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~---~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~ 431 (880)
....+...|+++.|...|+.+...-.. +.... -.+..+|.+.++++.|...|++..+..+.....-|...+.+++.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 334446678888888888888775322 22222 34566777888888888888888776544333334444444331
Q ss_pred --CC---------------C---HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHH
Q 002795 432 --NG---------------R---WQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGT 491 (880)
Q Consensus 432 --~g---------------~---~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~ 491 (880)
.+ + ...|+..|+. ++.-|=.+.-..+|...+..+... -...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~----------------li~~yP~S~ya~~A~~rl~~l~~~---la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSK----------------LVRGYPNSQYTTDATKRLVFLKDR---LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHH----------------HHHHCcCChhHHHHHHHHHHHHHH---HHHH
Confidence 11 1 1223333333 333333344455555544444431 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002795 492 VNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMA 564 (880)
Q Consensus 492 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~ 564 (880)
--.+..-|.+.|.+.-|..-|+.+++.-. +..........++.+|...|..++|..+...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp-----------~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYP-----------DTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCC-----------CCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 12455667888888888888888887531 112244566677788888888888777665543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.2 Score=46.07 Aligned_cols=89 Identities=12% Similarity=0.169 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcC------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002795 189 TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKD------------KRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE 256 (880)
Q Consensus 189 ~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~------------~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~ 256 (880)
|..++..++.++++.|+++....+++.+..... .+..|+..+..+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 345666777777777777777777665543321 23457899999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhc
Q 002795 257 DCNLYPDIAAYHSVAVTLGQV 277 (880)
Q Consensus 257 ~~g~~pd~~t~~~ll~~~~~~ 277 (880)
.++++-+..+|..|+.-....
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 999988999999998755443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.14 Score=53.01 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=86.7
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC
Q 002795 163 DRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG 242 (880)
Q Consensus 163 ~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g 242 (880)
+.+.+.++|.+|+..|...++.. +-|..-|..-..+|++.|.++.|.+=.+..+...+ ....+|..|-.+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp----~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP----HYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHccC
Confidence 45667889999999999999886 66788888899999999999999999998887654 45678999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 002795 243 RPHEALRIFNLMLEDCNLYPDIAAYHSVAVT 273 (880)
Q Consensus 243 ~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~ 273 (880)
++++|++.|++..+ +.|+..+|-.=+..
T Consensus 164 k~~~A~~aykKaLe---ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE---LDPDNESYKSNLKI 191 (304)
T ss_pred cHHHHHHHHHhhhc---cCCCcHHHHHHHHH
Confidence 99999999999886 68888877555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.7 Score=42.06 Aligned_cols=57 Identities=26% Similarity=0.357 Sum_probs=30.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002795 391 VRAFWEEGKINEAVAAVRNMEQRGVVGTA--SVYYELACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 391 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
..++-..|+.++|+.+|++....|+.... ..+-.+..+|...|++++|+.+|++...
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445556666666666666665554331 2333445555566666666666655554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.08 Score=42.21 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=38.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 002795 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLED 257 (880)
Q Consensus 196 ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~ 257 (880)
+...+...|++++|...|+.+++..+ .+..++..+..++...|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P----~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP----DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556667777777777777766543 35667777777777777777777777777653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.082 Score=42.13 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=45.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 462 IISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 462 l~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
...+...|++++|...|+.+.+..+-+...|..+..++.+.|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455677888888888888888866667888888888888888888888888888774
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.13 Score=41.48 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 002795 352 YGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEG-KINEAVAAVRNM 410 (880)
Q Consensus 352 ~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g-~~~~A~~~~~~m 410 (880)
|..+...+...|++++|...|.+.++.. +.+...|..+..+|...| ++++|++.|+..
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3333344444444444444444444432 223334444444444444 344444444433
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.04 E-value=9.5 Score=44.67 Aligned_cols=168 Identities=14% Similarity=0.077 Sum_probs=93.5
Q ss_pred CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhCCCHHHHHHHHHHHHhCcCCCCC
Q 002795 151 WRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQML-----KLLKGLGDKGSWRQAMSVLDWVYGLKDKRDL 225 (880)
Q Consensus 151 ~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~-----~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~ 225 (880)
..++++.|-.+.+.+. .+. .-.+.+.|++.+..-|. .++.-+...+.+..|.++-.++-. +..
T Consensus 401 ~~~~~d~~~~v~~~lr-------Vln-~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~--p~~-- 468 (829)
T KOG2280|consen 401 RTPNPDEYMRVCRELR-------VLN-ALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNL--PES-- 468 (829)
T ss_pred ccCChHHHHHHHHHHH-------HHh-hhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCC--ccc--
Confidence 4455566555554441 111 12334578888887775 467777888999999999988722 111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhh
Q 002795 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNL-YPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRK 304 (880)
Q Consensus 226 ~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~-~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~ 304 (880)
.+-.+|.....-+.+..+.. -..+++.+.++.+. --..++|..+......+|+.+-|..+++.=...+.. +.
T Consensus 469 ~~~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~q-V~----- 541 (829)
T KOG2280|consen 469 QGDRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQ-VP----- 541 (829)
T ss_pred cccHHHHHHHHHHHhccCcc-chHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccch-hH-----
Confidence 12456667766666663221 12223333332111 135677888888888999999998877643332200 00
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 002795 305 NWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (880)
Q Consensus 305 ~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~ 342 (880)
.-.+..-+...+.-+.+.|+.+-...++-.|..
T Consensus 542 -----lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 542 -----LLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred -----HHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 001122244455555666666666666655543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.98 E-value=6.8 Score=46.40 Aligned_cols=178 Identities=16% Similarity=0.098 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHH
Q 002795 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV----YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA 266 (880)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~----~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t 266 (880)
.....-+..+.+...+..|..+-..- + .|... ......-+.+.|++++|...|-+.... +.|.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~---~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s--- 401 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQ---H-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS--- 401 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhc---C-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH---
Confidence 34455666666666677776665422 1 22222 222333445668888888777666542 3332
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC
Q 002795 267 YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346 (880)
Q Consensus 267 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~ 346 (880)
.+|.-|....++.+-...++.+.+.| -.+...-+.||.+|.+.++.++-.++.+.-- .|..
T Consensus 402 --~Vi~kfLdaq~IknLt~YLe~L~~~g----------------la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~ 462 (933)
T KOG2114|consen 402 --EVIKKFLDAQRIKNLTSYLEALHKKG----------------LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW 462 (933)
T ss_pred --HHHHHhcCHHHHHHHHHHHHHHHHcc----------------cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce
Confidence 34555666667777777777777765 2344455678888888888888766665543 2221
Q ss_pred -CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002795 347 -PSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNME 411 (880)
Q Consensus 347 -pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 411 (880)
-|. -..+..|.+.+-+++|..+-..... +......++ -..|++++|++++..|.
T Consensus 463 ~fd~---e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 463 FFDV---ETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred eeeH---HHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 133 4467777777777777766544333 233333333 35678888888887653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.95 E-value=7.3 Score=42.83 Aligned_cols=139 Identities=10% Similarity=0.102 Sum_probs=83.4
Q ss_pred CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHH
Q 002795 150 RWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF 229 (880)
Q Consensus 150 ~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~ 229 (880)
..+.+.-+|-.|++-+...+..++..+++++|..- .+.-..+|..-+.+=....+++....+|.+.+... .++.
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-----l~ld 110 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-----LNLD 110 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-----ccHh
Confidence 45667788888999888888888888888888743 24455666666666666678888888888876532 4566
Q ss_pred HHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCCCCC-HHHHHHHHHHH---------HhcCCHHHHHHHHHHHHhC
Q 002795 230 VYTKLLAILGKAGRP------HEALRIFNLMLEDCNLYPD-IAAYHSVAVTL---------GQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 230 ~~~~Ll~~~~~~g~~------~~A~~lf~~m~~~~g~~pd-~~t~~~ll~~~---------~~~g~~~~A~~l~~~m~~~ 293 (880)
.|...+....+.... ....+.|+-...-.++.|- ...|+..+..+ ..+.+++.....|.+|...
T Consensus 111 LW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t 190 (660)
T COG5107 111 LWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT 190 (660)
T ss_pred HHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC
Confidence 777777644443211 1112233333222244443 23344433322 1223445666677777765
Q ss_pred C
Q 002795 294 P 294 (880)
Q Consensus 294 g 294 (880)
+
T Consensus 191 P 191 (660)
T COG5107 191 P 191 (660)
T ss_pred c
Confidence 4
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.22 Score=53.29 Aligned_cols=296 Identities=11% Similarity=0.028 Sum_probs=150.3
Q ss_pred HHHHHHHHHH--HhcCCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHH--Hc--C-CCc
Q 002795 314 LVVYNAVLNA--CVPSHQWKGVFWVFKQLRKSGLKPSAA----TYGLAMEVMLQSGKYDLVHEFFRKMA--KS--G-EAI 382 (880)
Q Consensus 314 ~~ty~~ll~~--~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~a~~~~g~~~~A~~l~~~m~--~~--g-~~~ 382 (880)
...|...+.+ +++.|+......+|+...+.|.. |.. .|.-|-++|.-.+++++|.+++..=+ .+ | -.-
T Consensus 15 ~SCleLalEGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklG 93 (639)
T KOG1130|consen 15 RSCLELALEGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLG 93 (639)
T ss_pred hHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhc
Confidence 3344444444 67778888888888777776632 332 34445566666667777776654311 11 1 001
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHH
Q 002795 383 GALTYKVLVRAFWEEGKINEAVAAVRNM----EQRGV-VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT 457 (880)
Q Consensus 383 d~~~~~~Li~~~~~~g~~~~A~~~~~~m----~~~g~-~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t 457 (880)
...+...|.+.+--.|.+++|.-.-.+- .+.|- +.....+..|...|...|+.-... .-.+ .+..+..++
T Consensus 94 EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee-~g~f~~ev~ 168 (639)
T KOG1130|consen 94 EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEE-KGAFNAEVT 168 (639)
T ss_pred cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----Chhh-cccccHHHH
Confidence 1223333444444455555554432221 11111 111122222344444333311000 0000 111121111
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhh-----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCC
Q 002795 458 FTGLIISSMDGGHIDDCISIFQHMKD-----H-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGA 531 (880)
Q Consensus 458 ~~~ll~a~~~~g~~~~A~~i~~~m~~-----~-~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~ 531 (880)
..++.|.++|.+-.+ + -..-...|..|...|.-.|+++.|+...+.-+...- ..+
T Consensus 169 -----------~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~--------efG 229 (639)
T KOG1130|consen 169 -----------SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQ--------EFG 229 (639)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHH--------Hhh
Confidence 012333444433211 0 011123455566666667889998877654333100 000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----C
Q 002795 532 PLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALS----GC-QLDQTKHAWLLVEASRAGKCHLLEHAFDSLLE-----A 601 (880)
Q Consensus 532 ~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~----g~-~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~-----~ 601 (880)
.-......+..+..++.-.|+++.|.+.|+.-... |- ........+|-+.|.-...++.|+.++.+-.. .
T Consensus 230 DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~ 309 (639)
T KOG1130|consen 230 DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE 309 (639)
T ss_pred hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01123456777888888889999998888765432 21 12233455677777777788888888774332 1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 002795 602 GEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 634 (880)
Q Consensus 602 g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 634 (880)
+..-....++++..++-..|+.++|+.+.+.-.
T Consensus 310 DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 310 DRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 223345577789888888899999888777654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.55 Score=43.16 Aligned_cols=95 Identities=9% Similarity=0.004 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccc--CCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002795 488 NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFL--SGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMAL 565 (880)
Q Consensus 488 d~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l--~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~ 565 (880)
|..++.++|.++++.|+.+....+++..=.-.......- .....++.|+..+..+++.+|+..+++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456778888888888888888777765433211000000 122344556666666666666666666666666555543
Q ss_pred C-CCCCCHHHHHHHHHHH
Q 002795 566 S-GCQLDQTKHAWLLVEA 582 (880)
Q Consensus 566 ~-g~~pd~~~~~~ll~~~ 582 (880)
. +++.+..++..|+.-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 3 4444455555555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.73 E-value=4.1 Score=41.03 Aligned_cols=59 Identities=10% Similarity=0.059 Sum_probs=25.3
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcC
Q 002795 163 DRLSEREMTAKNWKFVRIMNQSGL--MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKD 221 (880)
Q Consensus 163 ~~l~~~~~~~~A~~l~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~ 221 (880)
..+...|++.+|...|+.+....- +........++.++-+.|++..|...++..++.-|
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 333445555555555555554210 11223334444455555555555555555544433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.49 E-value=1.4 Score=46.11 Aligned_cols=111 Identities=13% Similarity=-0.057 Sum_probs=88.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 002795 176 KFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG---RPHEALRIFN 252 (880)
Q Consensus 176 ~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g---~~~~A~~lf~ 252 (880)
.-++.-.+.+ +-|...|..|...|...|++..|..-|...++..+ ++...+..+..++.... ...++..+|+
T Consensus 143 a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g----~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 143 ARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG----DNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3344444444 67899999999999999999999999999988765 56677777777665543 4568999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 002795 253 LMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (880)
Q Consensus 253 ~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~ 293 (880)
++... -+-|+.+...|...+...|++.+|...++.|...
T Consensus 218 ~al~~--D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 218 QALAL--DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 99983 4446667777778899999999999999999985
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.42 E-value=3 Score=45.32 Aligned_cols=271 Identities=12% Similarity=0.029 Sum_probs=133.3
Q ss_pred HhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 002795 324 CVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEA 403 (880)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A 403 (880)
+.+..++..|+..+....+.... +..-|..-...+...|+++++.--.+.-++.. +.....+.-.-.++...++..+|
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHH
Confidence 44555666677777666665422 33344444444555555555554443333321 01112222333344444444455
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-HHHHhCCCHHHHHHHHHHHh
Q 002795 404 VAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLI-ISSMDGGHIDDCISIFQHMK 482 (880)
Q Consensus 404 ~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll-~a~~~~g~~~~A~~i~~~m~ 482 (880)
.+.|+ +...| ....|+..++.+.......|...++-.+- ..+...|+.+.|.++--.+.
T Consensus 137 ~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il 196 (486)
T KOG0550|consen 137 EEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL 196 (486)
T ss_pred HHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH
Confidence 54444 00001 11122222222222111123333333332 33456788888887776666
Q ss_pred hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHH---HHH----------HHH
Q 002795 483 DHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSM---LEA----------SAT 549 (880)
Q Consensus 483 ~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~l---l~a----------~~~ 549 (880)
+-...+....-.=-.++--.++.+.|...|++.+..+ ||...-.++ ... ..+
T Consensus 197 kld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld---------------pdh~~sk~~~~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 197 KLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD---------------PDHQKSKSASMMPKKLEVKKERGNDAFK 261 (486)
T ss_pred hcccchhHHHHhcccccccccchHHHHHHHhhhhccC---------------hhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence 6333333322222223334678889999999988854 665433222 222 234
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HhCCHH
Q 002795 550 AHQWEYFEYVYKGMALS---GCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAI--VQSNYE 624 (880)
Q Consensus 550 ~~~~~~A~~l~~~m~~~---g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~g~~~ 624 (880)
.|++..|.+.|.+.+.. ...|+...|...-....+.|+..+|..--+.....+ | ..++-.+..+-| ..++++
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~-syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--S-SYIKALLRRANCHLALEKWE 338 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--H-HHHHHHHHHHHHHHHHHHHH
Confidence 57788888888877642 223334445544455667788888877766665521 1 122222222222 235677
Q ss_pred HHHHHHHHhh
Q 002795 625 KAVALINAMA 634 (880)
Q Consensus 625 ~A~~l~~~m~ 634 (880)
+|.+-+++..
T Consensus 339 ~AV~d~~~a~ 348 (486)
T KOG0550|consen 339 EAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHH
Confidence 7777777654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.17 Score=40.76 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 002795 456 ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRND-MFSKAKELFEETTR 517 (880)
Q Consensus 456 ~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g-~~~~A~~lf~~m~~ 517 (880)
.+|..+-..+...|++++|+..|.+..+..+.+...|..+..+|.+.| ++++|++.|++.++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345555555666666666666666666544555666666666666666 56777777666655
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.33 E-value=3 Score=47.58 Aligned_cols=93 Identities=16% Similarity=0.290 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHH---------HHHHHcCCCccHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCC
Q 002795 348 SAATYGLAMEVMLQSGKYDLVHEFF---------RKMAKSGEAIGALTYKVLVRAFWEEGKI--NEAVAAVRNMEQRGVV 416 (880)
Q Consensus 348 d~~t~~~ll~a~~~~g~~~~A~~l~---------~~m~~~g~~~d~~~~~~Li~~~~~~g~~--~~A~~~~~~m~~~g~~ 416 (880)
....+.+=+..|...|.+++|.++- +.+... ..+.-.++.-=.+|.+..+. -+.+.-+++|.++|-.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 3344444455566677776665532 111111 12334455555677766653 3455567788888988
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002795 417 GTASVYYELACCLCNNGRWQDAMLVVEKI 445 (880)
Q Consensus 417 p~~~t~~~Li~~~~~~g~~~~A~~l~~~m 445 (880)
|+... +...++-.|++.+|-++|.+-
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 88765 344577788888888888763
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.88 Score=47.79 Aligned_cols=101 Identities=11% Similarity=0.002 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHH
Q 002795 155 AEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFT---EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVY 231 (880)
Q Consensus 155 ~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~ 231 (880)
...|...+..+.+.+++++|...|+.+.+.. +-+ ...+..+...|...|+++.|...|+.+++..+... ....++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~-~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP-KAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhHHH
Confidence 4556665555566788888888888887654 211 35667777788888888888888888876554321 234455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 002795 232 TKLLAILGKAGRPHEALRIFNLMLED 257 (880)
Q Consensus 232 ~~Ll~~~~~~g~~~~A~~lf~~m~~~ 257 (880)
-.+...+...|+.++|..+|+.+.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55666677788888888888888774
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.21 E-value=5.7 Score=40.20 Aligned_cols=214 Identities=15% Similarity=0.160 Sum_probs=119.6
Q ss_pred CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHH
Q 002795 150 RWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF 229 (880)
Q Consensus 150 ~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~ 229 (880)
.|..-...|.....++....++++|-..+....+. ...+...|. ..++ ++.|.-+..++.+.. --+.
T Consensus 26 d~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-AAKa------yEqaamLake~~kls-----Evvd 92 (308)
T KOG1585|consen 26 DWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-AAKA------YEQAAMLAKELSKLS-----EVVD 92 (308)
T ss_pred CchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-HHHH------HHHHHHHHHHHHHhH-----HHHH
Confidence 46666778888889999999999998887776531 122222221 2222 344444444443211 1234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcC
Q 002795 230 VYTKLLAILGKAGRPHEALRIFNLMLED-CNLYPDI--AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (880)
Q Consensus 230 ~~~~Ll~~~~~~g~~~~A~~lf~~m~~~-~g~~pd~--~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f 306 (880)
.|+....+|..+|.++-|-..+++.-+- .++.|+. ..|.--+......++...|.++
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el-------------------- 152 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL-------------------- 152 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH--------------------
Confidence 5677778899999988877777664431 0234432 1233333333333333333333
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcC--
Q 002795 307 DPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS----GLKPSA-ATYGLAMEVMLQSGKYDLVHEFFRKMAKSG-- 379 (880)
Q Consensus 307 ~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~----g~~pd~-~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g-- 379 (880)
|..+-+++++...+.+|-..|.+-... .-.|+. ..|...|-.+.-..++..|+.+++.--+.+
T Consensus 153 ----------~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f 222 (308)
T KOG1585|consen 153 ----------YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAF 222 (308)
T ss_pred ----------HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccc
Confidence 333444566666676665554443211 111222 235556666777778888888888755443
Q ss_pred -CCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 002795 380 -EAIGALTYKVLVRAFWEEGKINEAVAAV 407 (880)
Q Consensus 380 -~~~d~~~~~~Li~~~~~~g~~~~A~~~~ 407 (880)
-+-+..+...|+.+| ..|+.+++..++
T Consensus 223 ~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 223 LKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred cChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 233567777788877 457777666554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.19 E-value=10 Score=41.35 Aligned_cols=89 Identities=10% Similarity=0.046 Sum_probs=59.4
Q ss_pred HHhCCCHHHHHHHHHHHhh----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH-HH
Q 002795 465 SMDGGHIDDCISIFQHMKD----HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE-YT 539 (880)
Q Consensus 465 ~~~~g~~~~A~~i~~~m~~----~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~-~t 539 (880)
..+.|++..|.+.|.+... +..++...|.....+..+.|+..+|+.--++..+. .|.. ..
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---------------D~syika 323 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---------------DSSYIKA 323 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc---------------CHHHHHH
Confidence 3567888888888887765 25667777777778888888888888888777662 2221 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 002795 540 YSSMLEASATAHQWEYFEYVYKGMALSGC 568 (880)
Q Consensus 540 ~~~ll~a~~~~~~~~~A~~l~~~m~~~g~ 568 (880)
|..-..++...+.|+.|.+-++...+..-
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 22223344445788888888887766533
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.63 Score=48.85 Aligned_cols=100 Identities=15% Similarity=0.091 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhh
Q 002795 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI----AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHR 303 (880)
Q Consensus 228 ~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~----~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~ 303 (880)
...|...+..+.+.|++++|+..|+.+.+. .|+. .++-.+...|...|++++|...|..+......
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~------- 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK------- 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-------
Confidence 345666666667778999999999998875 3442 46667778888899999999999988764200
Q ss_pred hcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 002795 304 KNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (880)
Q Consensus 304 ~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~ 343 (880)
.+.....+-.+...+...|+.++|..+|+.+.+.
T Consensus 213 ------s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 213 ------SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred ------CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2223344444556677788888888888888764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.25 Score=46.82 Aligned_cols=71 Identities=23% Similarity=0.393 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCCHHH
Q 002795 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE----DCNLYPDIAA 266 (880)
Q Consensus 192 ~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~----~~g~~pd~~t 266 (880)
.+..++..+...|+++.|..+...++...| .|...|..+|.+|...|+..+|.++|+.+.+ ..|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP----~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP----YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST----T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344566666677888888888887776554 5677888888888888888888888777643 2467776655
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.15 E-value=4.7 Score=46.03 Aligned_cols=169 Identities=15% Similarity=0.206 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHH-----HHHHHHhcCCHHHHHHH
Q 002795 332 GVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKV-----LVRAFWEEGKINEAVAA 406 (880)
Q Consensus 332 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~-----Li~~~~~~g~~~~A~~~ 406 (880)
+...-+++|++.|-.|+... +...|+-.|++.+|.++|.+--..+-. ...|+- +..-|...|..++-..+
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRA--lEmyTDlRMFD~aQE~~~~g~~~eKKmL 692 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRA--LEMYTDLRMFDYAQEFLGSGDPKEKKML 692 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhH--HHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 44445667777777777654 445566677777777777543221100 111111 11222333333332222
Q ss_pred HHHHHH--CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-----H-Hhc--CCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 002795 407 VRNMEQ--RGVVGTASVYYELACCLCNNGRWQDAMLVVEK-----I-KSL--RHSKPLEITFTGLIISSMDGGHIDDCIS 476 (880)
Q Consensus 407 ~~~m~~--~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~-----m-~~~--~~~~p~~~t~~~ll~a~~~~g~~~~A~~ 476 (880)
.++-.+ +++.-.. +....+...|+.+.|..+.-+ | .+- .-...+..+...+..-+.+...+..|-+
T Consensus 693 ~RKRA~WAr~~kePk----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAae 768 (1081)
T KOG1538|consen 693 IRKRADWARNIKEPK----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAE 768 (1081)
T ss_pred HHHHHHHhhhcCCcH----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHH
Confidence 222111 1111111 122334445555555443221 0 000 0011233344444455556677888999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 477 IFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 477 i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 517 (880)
+|..|-+ ...+++.....+++.+|..+-+...+
T Consensus 769 IF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 769 IFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHhcc--------HHHHhhheeecccchHhHhhhhhCcc
Confidence 9998865 34677888889999999999888766
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.01 E-value=20 Score=44.35 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=21.7
Q ss_pred CccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 002795 381 AIGALTYKVLVRAFWEEG--KINEAVAAVRNMEQ 412 (880)
Q Consensus 381 ~~d~~~~~~Li~~~~~~g--~~~~A~~~~~~m~~ 412 (880)
.|+ ...-.+|.+|.+.+ .++.|+....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 444 45557888888887 67777777777664
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.28 Score=40.00 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=36.8
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 002795 198 KGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLED 257 (880)
Q Consensus 198 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~ 257 (880)
..|.+.++++.|..+++.++...| .++..|.....++.+.|++.+|...|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP----DDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc----ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 455666777777777777666544 35556666666677777777777777776653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.53 E-value=12 Score=41.04 Aligned_cols=161 Identities=11% Similarity=-0.016 Sum_probs=80.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcC---CCccHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002795 355 AMEVMLQSGKYDLVHEFFRKMAKSG---EAIGALTYKVLVRAFWE---EGKINEAVAAVRNMEQRGVVGTASVYYELACC 428 (880)
Q Consensus 355 ll~a~~~~g~~~~A~~l~~~m~~~g---~~~d~~~~~~Li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~ 428 (880)
++-+|....+++...++++.|...- +.-...+--...-++-+ .|+.++|.+++..+......++..+|..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3334555555555555555555431 11111111122223333 45556666665554444444455555544444
Q ss_pred HH---------hCCCHHHHHHHHHHHHhcCCCCCCHHH---HHHHHHHHHhC-CCHHHHHHHH---HHHh--hC---CCC
Q 002795 429 LC---------NNGRWQDAMLVVEKIKSLRHSKPLEIT---FTGLIISSMDG-GHIDDCISIF---QHMK--DH---CEP 487 (880)
Q Consensus 429 ~~---------~~g~~~~A~~l~~~m~~~~~~~p~~~t---~~~ll~a~~~~-g~~~~A~~i~---~~m~--~~---~~p 487 (880)
|- .....+.|+..|.+--. ..|+..+ +..|+...... ..-.+..++- ..+. ++ -..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 32 11235667777766654 3344332 33333322221 1111222222 1111 12 345
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 488 NIGTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 488 d~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
+-.-+.+++.++.-.|+.++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 6677788999999999999999999999884
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.44 Score=38.79 Aligned_cols=57 Identities=5% Similarity=0.022 Sum_probs=47.8
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002795 463 ISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 519 (880)
Q Consensus 463 ~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 519 (880)
..|.+.++++.|..+++.+..-.+.+...|.....+|.+.|++.+|...|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788888888888888888667788888888888999999999999999988854
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.36 E-value=12 Score=41.10 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=12.5
Q ss_pred HHHHHHhhhccCHHHHHHHHHHHHhC
Q 002795 646 TELFESNEDRISRDKLEKLLNALCNC 671 (880)
Q Consensus 646 ~~ll~a~~~~~~~~~a~~l~~~~~~~ 671 (880)
.+++.++.-.++.+.+.+..+.|.+.
T Consensus 309 ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 309 ATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34444444444555555555554444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.36 E-value=1.1 Score=45.93 Aligned_cols=106 Identities=12% Similarity=0.104 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHH
Q 002795 311 EPDLVVYNAVLNACVP-----SHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGAL 385 (880)
Q Consensus 311 ~pd~~ty~~ll~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~ 385 (880)
+.|-.+|-+++..+.. .+..+-....++.|.+.|+.-|..+|+.||+.+-+..- .| ..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP-~n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IP-QN 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------cc-HH
Confidence 4455555555554432 23444444555555555665566666555554432211 11 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 002795 386 TYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW 435 (880)
Q Consensus 386 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~ 435 (880)
++....-.|-+ .-+-+++++++|...|+.||..+-..|+.++.+.+..
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 11222222221 1234678888888888888888888888888776654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.32 E-value=2.3 Score=48.24 Aligned_cols=81 Identities=9% Similarity=0.133 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 002795 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVR 392 (880)
Q Consensus 313 d~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~ 392 (880)
+...|..|.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.+.....| -+|....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~ 410 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQ 410 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHH
Confidence 344555555555555555555555554321 3344444555555555555444444443 1333344
Q ss_pred HHHhcCCHHHHHHHHH
Q 002795 393 AFWEEGKINEAVAAVR 408 (880)
Q Consensus 393 ~~~~~g~~~~A~~~~~ 408 (880)
++.-.|++++..+++.
T Consensus 411 ~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 411 AALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHT-HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 4444455555544443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.22 E-value=11 Score=38.57 Aligned_cols=133 Identities=8% Similarity=-0.017 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH-
Q 002795 385 LTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLII- 463 (880)
Q Consensus 385 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~- 463 (880)
.+.+.++..+.-.|.+.-.+.++.+..+++..-++.....|.+.-.+.|+.+.|...|++..+ ...+.+..+++.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek-~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK-VTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HHhhhhccchhHHHHh
Confidence 455667777777778888888888888877666777777777777788888888888887665 333344444443332
Q ss_pred ----HHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002795 464 ----SSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 518 (880)
Q Consensus 464 ----a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 518 (880)
.|.-.+++..|...|.++....+.|+..-|.-.-++.-.|+..+|++..+.|...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2444677788888888877765666666665554555568888999999988874
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.05 E-value=15 Score=39.73 Aligned_cols=223 Identities=13% Similarity=0.064 Sum_probs=119.3
Q ss_pred HHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH--HHHHHHHHH---HhCC
Q 002795 360 LQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGV-VGTAS--VYYELACCL---CNNG 433 (880)
Q Consensus 360 ~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~--t~~~Li~~~---~~~g 433 (880)
-+.|+.+.|.++-+..-..- +-=...+.+++...|..|+++.|+++++.-....+ .++.. .-..|+.+- .-..
T Consensus 165 qr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 34555555555555544432 11134555566666666666666666655443322 22221 111121111 1122
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002795 434 RWQDAMLVVEKIKSLRHSKPLEI-TFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELF 512 (880)
Q Consensus 434 ~~~~A~~l~~~m~~~~~~~p~~~-t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf 512 (880)
+...|...-.+..+ ..|+.. .-.....++.+.|++.++-.+++.+-+. .|.+..+. +..+.+.|+ .++.-+
T Consensus 244 dp~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~-ePHP~ia~--lY~~ar~gd--ta~dRl 315 (531)
T COG3898 244 DPASARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA-EPHPDIAL--LYVRARSGD--TALDRL 315 (531)
T ss_pred ChHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc-CCChHHHH--HHHHhcCCC--cHHHHH
Confidence 34444444444333 455543 2333446677888888888888887662 24444432 223344444 344444
Q ss_pred HHHHHcCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCHHH
Q 002795 513 EETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEA-SRAGKCHL 590 (880)
Q Consensus 513 ~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~-~~~G~~~~ 590 (880)
++..+.. .++| +..+...+..+....|++..|..--+.... ..|....|..|-+.- +..|+-.+
T Consensus 316 kRa~~L~------------slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~ 381 (531)
T COG3898 316 KRAKKLE------------SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGK 381 (531)
T ss_pred HHHHHHH------------hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHH
Confidence 4433322 1556 445666677777777888777665555443 577777777766664 45688888
Q ss_pred HHHHHHHHHHCCCCC
Q 002795 591 LEHAFDSLLEAGEIP 605 (880)
Q Consensus 591 A~~~~~~m~~~g~~p 605 (880)
+.+.+.+.....-.|
T Consensus 382 vR~wlAqav~APrdP 396 (531)
T COG3898 382 VRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHHHHHhcCCCCC
Confidence 888888877754444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.04 E-value=1 Score=46.11 Aligned_cols=46 Identities=15% Similarity=0.041 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 002795 367 LVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKI-NEAVAAVRNMEQ 412 (880)
Q Consensus 367 ~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~-~~A~~~~~~m~~ 412 (880)
-+..++++|...|+.||..+-..|++++.+.+.. .+..++.-.|.+
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 5789999999999999999999999999988763 345555555543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.02 E-value=16 Score=39.70 Aligned_cols=282 Identities=13% Similarity=0.119 Sum_probs=181.5
Q ss_pred hCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCCHHHHH----HHHHHHH
Q 002795 202 DKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI--LGKAGRPHEALRIFNLMLEDCNLYPDIAAYH----SVAVTLG 275 (880)
Q Consensus 202 ~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~--~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~----~ll~~~~ 275 (880)
..|+-..|+++-.+..+.-. .|....-.|+.+ -.-.|+++.|.+-|+.|.. |+.|-- .|.-..-
T Consensus 96 gAGda~lARkmt~~~~~lls----sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAq 165 (531)
T COG3898 96 GAGDASLARKMTARASKLLS----SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQ 165 (531)
T ss_pred ccCchHHHHHHHHHHHhhhh----ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHH
Confidence 45778888887776543221 232233333332 2346999999999999987 333432 2333334
Q ss_pred hcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC-CCCCHHH--H
Q 002795 276 QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG-LKPSAAT--Y 352 (880)
Q Consensus 276 ~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t--~ 352 (880)
+.|..+.|...-+..... -+.-.-.+.+.+...+..|+|+.|+++++.-+... +.++..- -
T Consensus 166 r~GareaAr~yAe~Aa~~----------------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~r 229 (531)
T COG3898 166 RLGAREAARHYAERAAEK----------------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSR 229 (531)
T ss_pred hcccHHHHHHHHHHHHhh----------------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHH
Confidence 668888888877777664 33445678889999999999999999998876543 3444422 2
Q ss_pred HHHHHHHH---HcCChHHHHHHHHHHHHcCCCccHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002795 353 GLAMEVML---QSGKYDLVHEFFRKMAKSGEAIGALT-YKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACC 428 (880)
Q Consensus 353 ~~ll~a~~---~~g~~~~A~~l~~~m~~~g~~~d~~~-~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~ 428 (880)
..|+.+-+ -..+...|...-.+..+. .||..- --.-..++.+.|++.++-.+++.+-+..+.|+.. ..
T Consensus 230 AvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia------~l 301 (531)
T COG3898 230 AVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA------LL 301 (531)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH------HH
Confidence 22333221 123445566655555553 444322 2234567889999999999999999988777543 22
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhc-CCHH
Q 002795 429 LCNNGRWQDAMLVVEKIKSLRHSKPLE-ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRN-DMFS 506 (880)
Q Consensus 429 ~~~~g~~~~A~~l~~~m~~~~~~~p~~-~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~-g~~~ 506 (880)
|....--+.++.-+++..+....+||. .+...+..+-...|++..|+.--+.... ..|....|..|.+.-... |+-.
T Consensus 302 Y~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-~~pres~~lLlAdIeeAetGDqg 380 (531)
T COG3898 302 YVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-EAPRESAYLLLADIEEAETGDQG 380 (531)
T ss_pred HHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-hCchhhHHHHHHHHHhhccCchH
Confidence 444433445566666666656677776 3455666777788998888766555443 457777787777765544 9999
Q ss_pred HHHHHHHHHHHc
Q 002795 507 KAKELFEETTRA 518 (880)
Q Consensus 507 ~A~~lf~~m~~~ 518 (880)
++...+.+..+.
T Consensus 381 ~vR~wlAqav~A 392 (531)
T COG3898 381 KVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHhcC
Confidence 999999888775
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.60 E-value=21 Score=40.16 Aligned_cols=199 Identities=13% Similarity=0.037 Sum_probs=97.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 002795 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFW 395 (880)
Q Consensus 316 ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~ 395 (880)
.+..|-.++- ..+...-.+.-.+..+ +.||-.+.- ++-+--.+..+.+++++|++..+.| ...+.
T Consensus 171 Aq~IMq~AWR-ERnp~aRIkaA~eALe--i~pdCAdAY-ILLAEEeA~Ti~Eae~l~rqAvkAg----E~~lg------- 235 (539)
T PF04184_consen 171 AQEIMQKAWR-ERNPQARIKAAKEALE--INPDCADAY-ILLAEEEASTIVEAEELLRQAVKAG----EASLG------- 235 (539)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHH--hhhhhhHHH-hhcccccccCHHHHHHHHHHHHHHH----HHhhc-------
Confidence 3444444443 3344443444444433 345443322 2222233455778888888877764 11111
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 002795 396 EEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCI 475 (880)
Q Consensus 396 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~ 475 (880)
+....+..-..++.+..++..+-..+-..+..++-+.|+.++|++.|++|.+.....-+......|+.++...+.+.++.
T Consensus 236 ~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 236 KSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred hhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 00000011111222223333333333344666666778888888887777652221112234566777777777777777
Q ss_pred HHHHHHhhCCCCC--HHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHcCCCCccccCCC
Q 002795 476 SIFQHMKDHCEPN--IGTVNAMLKVYSRNDM---------------FSKAKELFEETTRANSSGYTFLSGD 529 (880)
Q Consensus 476 ~i~~~m~~~~~pd--~~~~~~Li~~~~~~g~---------------~~~A~~lf~~m~~~g~~~~~~l~~~ 529 (880)
.++.+-.+-..|. ..+|+..+--+-..++ -..|.+.+.+..+.+.+....+.+.
T Consensus 316 ~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 316 ALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred HHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 7777765421222 3455554432222221 1246677888877775555444443
|
The molecular function of this protein is uncertain. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.35 E-value=6.5 Score=36.74 Aligned_cols=42 Identities=7% Similarity=0.092 Sum_probs=19.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 002795 355 AMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEE 397 (880)
Q Consensus 355 ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~ 397 (880)
++..+...+.......+++.+...+ ..+...+|.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 4444444445555555555554444 23444455555555443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.41 Score=39.67 Aligned_cols=62 Identities=19% Similarity=0.286 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002795 230 VYTKLLAILGKAGRPHEALRIFNLMLED---CN-LYPD-IAAYHSVAVTLGQVGLLKELVKLIERMR 291 (880)
Q Consensus 230 ~~~~Ll~~~~~~g~~~~A~~lf~~m~~~---~g-~~pd-~~t~~~ll~~~~~~g~~~~A~~l~~~m~ 291 (880)
+|+.+...|...|++++|+..|++..+. .| -.|+ ..+++.+..+|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555554421 01 0111 3345555556666666666666665543
|
... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.20 E-value=9.8 Score=43.77 Aligned_cols=111 Identities=18% Similarity=0.170 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCH-----HHHHHHHHHHHh----c
Q 002795 207 RQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI-----AAYHSVAVTLGQ----V 277 (880)
Q Consensus 207 ~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~-----~t~~~ll~~~~~----~ 277 (880)
.-..-+|.-++..-| | ....+++..+=.|+-+.+++++....+..++.-.. .+|+.++..++. .
T Consensus 174 ~~G~G~f~L~lSlLP----p---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~ 246 (468)
T PF10300_consen 174 YFGFGLFNLVLSLLP----P---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGED 246 (468)
T ss_pred HHHHHHHHHHHHhCC----H---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccC
Confidence 334556666655433 2 45677777778888888888888876653333221 234444444433 3
Q ss_pred CCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHH-HHHhcCCCHHHHHHHHHHHH
Q 002795 278 GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL-NACVPSHQWKGVFWVFKQLR 341 (880)
Q Consensus 278 g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll-~~~~~~g~~~~A~~l~~~m~ 341 (880)
...+.|.+++..+.+. -|+...|...- +.+...|+.++|++.|+...
T Consensus 247 ~~~~~a~~lL~~~~~~-----------------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR-----------------YPNSALFLFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred CCHHHHHHHHHHHHHh-----------------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 4556667777776653 34544443332 23555667777777766544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.45 Score=39.41 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCC--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002795 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKR--DLKS-RFVYTKLLAILGKAGRPHEALRIFNLMLE 256 (880)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~--~~~d-~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~ 256 (880)
..+++.+...|...|++++|+..|+.+++..... ..++ ..+++.+..+|...|++++|++.|++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566777777888888888888887776541111 1122 45788888888888888888888887654
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=2.8 Score=46.65 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=43.4
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002795 382 IGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA--SVYYELACCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 382 ~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~Li~~~~~~g~~~~A~~l~~~m~~ 447 (880)
.+...|+.+..+|.+.|++++|+..|++.++.++.... .+|+.+..+|...|+.++|+..+++..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566777777777777777777777776665433221 3466677777777777777777777665
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=91.75 E-value=2.1 Score=47.57 Aligned_cols=67 Identities=10% Similarity=-0.018 Sum_probs=59.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHH
Q 002795 485 CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE----YTYSSMLEASATAHQWEYFEYVY 560 (880)
Q Consensus 485 ~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~----~t~~~ll~a~~~~~~~~~A~~l~ 560 (880)
.+.+...|+.+..+|.+.|++++|+..|++.++ +.|+. .+|..+..+|...|+.++|.+.+
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---------------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~L 135 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALE---------------LNPNPDEAQAAYYNKACCHAYREEGKKAADCL 135 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455788999999999999999999999999998 45864 46999999999999999999999
Q ss_pred HHHHHC
Q 002795 561 KGMALS 566 (880)
Q Consensus 561 ~~m~~~ 566 (880)
++.++.
T Consensus 136 rrALel 141 (453)
T PLN03098 136 RTALRD 141 (453)
T ss_pred HHHHHh
Confidence 999874
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=91.56 E-value=7.9 Score=36.17 Aligned_cols=86 Identities=9% Similarity=-0.025 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 002795 317 YNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWE 396 (880)
Q Consensus 317 y~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~ 396 (880)
...++..+...+.......+++.+...+. .+...++.++..|++... ......+.. . .+......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 45677888888899999999999887763 577788889999887643 223333321 1 122333345566666
Q ss_pred cCCHHHHHHHHHHH
Q 002795 397 EGKINEAVAAVRNM 410 (880)
Q Consensus 397 ~g~~~~A~~~~~~m 410 (880)
.+.++++..++..+
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 66666666666554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.18 E-value=9.2 Score=44.00 Aligned_cols=185 Identities=18% Similarity=0.184 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHh
Q 002795 246 EALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACV 325 (880)
Q Consensus 246 ~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~ 325 (880)
-...+|+-+..- +||. +..++...+=.|+-+.+++++.+..+.++- .......-...|+.++..++
T Consensus 175 ~G~G~f~L~lSl--LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i---------~~~la~L~LL~y~~~~~~~~ 240 (468)
T PF10300_consen 175 FGFGLFNLVLSL--LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENI---------RSPLAALVLLWYHLVVPSFL 240 (468)
T ss_pred HHHHHHHHHHHh--CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCc---------chHHHHHHHHHHHHHHHHHc
Confidence 345566766663 4443 445666667779999999998887664310 00000011224555555443
Q ss_pred c----CCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHcC---CCccHHHHHHHHHHHHhc
Q 002795 326 P----SHQWKGVFWVFKQLRKSGLKPSAATYGLA-MEVMLQSGKYDLVHEFFRKMAKSG---EAIGALTYKVLVRAFWEE 397 (880)
Q Consensus 326 ~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-l~a~~~~g~~~~A~~l~~~m~~~g---~~~d~~~~~~Li~~~~~~ 397 (880)
. ..+.+.|.+++..+.+. -|+...|... .+.+...|++++|.+.|+...... .+.....+--+.-.+.-.
T Consensus 241 ~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~ 318 (468)
T PF10300_consen 241 GIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ 318 (468)
T ss_pred CCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH
Confidence 3 45667788888888764 5666555433 344567788888888888655321 112233444455566777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhCCCH-------HHHHHHHHHHHh
Q 002795 398 GKINEAVAAVRNMEQRGVVGTASVYY-ELACCLCNNGRW-------QDAMLVVEKIKS 447 (880)
Q Consensus 398 g~~~~A~~~~~~m~~~g~~p~~~t~~-~Li~~~~~~g~~-------~~A~~l~~~m~~ 447 (880)
+++++|...|..+.+.+-- +..+|. ....++...|+. ++|..+|.+...
T Consensus 319 ~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 319 HDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred chHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 7788888888777765432 122222 223334455666 666666666544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.97 E-value=42 Score=40.20 Aligned_cols=133 Identities=17% Similarity=0.145 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHC----CCCCCHHHHHHH-HHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHH
Q 002795 159 RVLVDRLSEREMTAKNWKFVRIMNQS----GLMFTEGQMLKL-LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233 (880)
Q Consensus 159 ~~li~~l~~~~~~~~A~~l~~~m~~~----g~~~~~~~~~~l-l~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~ 233 (880)
..++..+.+.+... |...++...+. +..+-...|..+ +..+...++...|.+.++.+.........+-++++-.
T Consensus 104 ~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~ 182 (608)
T PF10345_consen 104 FLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS 182 (608)
T ss_pred HHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 34556666666555 88888776652 222223333333 3333334899999999998877654344456666666
Q ss_pred HHHHHHH--cCCHHHHHHHHHHHHHcC-C-------CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHh
Q 002795 234 LLAILGK--AGRPHEALRIFNLMLEDC-N-------LYPDIAAYHSVAVTL--GQVGLLKELVKLIERMRQ 292 (880)
Q Consensus 234 Ll~~~~~--~g~~~~A~~lf~~m~~~~-g-------~~pd~~t~~~ll~~~--~~~g~~~~A~~l~~~m~~ 292 (880)
++.+... .+.++++.+.++.+.... + -.|-..+|..++..+ ...|+++.+...+.++..
T Consensus 183 l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 183 LSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666553 466777888777773320 1 134566777777655 456887777766655543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.81 E-value=13 Score=35.83 Aligned_cols=124 Identities=9% Similarity=0.059 Sum_probs=81.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHH
Q 002795 533 LKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAG--KCHLLEHAFDSLLEAGEIPHPLFF 610 (880)
Q Consensus 533 ~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G--~~~~A~~~~~~m~~~g~~p~~~~~ 610 (880)
+.|+...|..++..+.+.|.+....+ ++..++-+|.......+-.+.... -..-|.+++.++.. .+
T Consensus 25 i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~--------~~ 92 (167)
T PF07035_consen 25 IPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT--------AY 92 (167)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh--------hH
Confidence 78999999999999999998776554 445577777655554443332211 13334444444432 35
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCC
Q 002795 611 TEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCN 672 (880)
Q Consensus 611 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~ 672 (880)
..++..+...|++-+|+++.+.... .+...-..++.+..+.++......+++.+.+.+
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 5567788899999999999988632 222233456777677777777777777766654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.22 E-value=6.4 Score=44.71 Aligned_cols=133 Identities=11% Similarity=0.058 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH
Q 002795 155 AEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL 234 (880)
Q Consensus 155 ~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~L 234 (880)
....+.++.-|-+.|..+.|+.+...- ..-.....+.|+++.|.++... ..+...|..|
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~a~~---------~~~~~~W~~L 353 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEIAKE---------LDDPEKWKQL 353 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHHCCC---------CSTHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHHHHh---------cCcHHHHHHH
Confidence 344556666666666666666553221 1233444566677776666432 1466778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCH
Q 002795 235 LAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL 314 (880)
Q Consensus 235 l~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~ 314 (880)
.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+...++.......|
T Consensus 354 g~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-------------------- 403 (443)
T PF04053_consen 354 GDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEERG-------------------- 403 (443)
T ss_dssp HHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------------------
T ss_pred HHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHcc--------------------
Confidence 8888888888888887777653 4555556677777777666666666554
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHH
Q 002795 315 VVYNAVLNACVPSHQWKGVFWVFKQ 339 (880)
Q Consensus 315 ~ty~~ll~~~~~~g~~~~A~~l~~~ 339 (880)
-+|....++.-.|+.++..+++.+
T Consensus 404 -~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 -DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp --HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 144444555555666666655543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.19 E-value=28 Score=36.95 Aligned_cols=102 Identities=11% Similarity=0.110 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHH
Q 002795 315 VVYNAVLNACVPSHQWK---GVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLV 391 (880)
Q Consensus 315 ~ty~~ll~~~~~~g~~~---~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li 391 (880)
.++..++.+|...+..+ +|..+++.+...... ...+|..-+.++.+.++.+.+.+++.+|+..- ......+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 45667777787777655 455666666543221 24445566777777888999999999998863 21234455555
Q ss_pred HHHHhc--CCHHHHHHHHHHHHHCCCCCC
Q 002795 392 RAFWEE--GKINEAVAAVRNMEQRGVVGT 418 (880)
Q Consensus 392 ~~~~~~--g~~~~A~~~~~~m~~~g~~p~ 418 (880)
..+-.. .....|...++.+....+.|.
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 444221 223456666666554444443
|
It is also involved in sporulation []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.13 E-value=8.9 Score=34.93 Aligned_cols=93 Identities=19% Similarity=0.132 Sum_probs=68.0
Q ss_pred HHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHh
Q 002795 199 GLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI--AAYHSVAVTLGQ 276 (880)
Q Consensus 199 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~--~t~~~ll~~~~~ 276 (880)
+++..|+++.|++.|...+..-| ....+||.-..++.-.|+.++|+.-+++..+-.|-+--. .+|.--...|-.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P----~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAP----ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcc----cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 56778899999999988877655 456789999999999999999998888887753332111 123233345667
Q ss_pred cCCHHHHHHHHHHHHhCCc
Q 002795 277 VGLLKELVKLIERMRQKPS 295 (880)
Q Consensus 277 ~g~~~~A~~l~~~m~~~g~ 295 (880)
.|+.+.|..=|+...+.|+
T Consensus 128 ~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGS 146 (175)
T ss_pred hCchHHHHHhHHHHHHhCC
Confidence 7888999988888888773
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.10 E-value=15 Score=33.66 Aligned_cols=33 Identities=9% Similarity=-0.080 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002795 535 PDEYTYSSMLEASATAHQWEYFEYVYKGMALSG 567 (880)
Q Consensus 535 Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g 567 (880)
|++.....+..||.+.|+..++.+++.+.-+.|
T Consensus 118 ~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 118 INPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 444444444444444444444444444444443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.03 E-value=15 Score=33.63 Aligned_cols=139 Identities=15% Similarity=0.265 Sum_probs=82.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHH
Q 002795 240 KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNA 319 (880)
Q Consensus 240 ~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ 319 (880)
-.|.+++..++..+.... .+..-||.+|.-....-+-+-..++++.+-.. ||-
T Consensus 14 ldG~V~qGveii~k~v~S----sni~E~NWvICNiiDaa~C~yvv~~LdsIGki------------FDi----------- 66 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS----SNIKEYNWVICNIIDAADCDYVVETLDSIGKI------------FDI----------- 66 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH----S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG------------S-G-----------
T ss_pred HhchHHHHHHHHHHHcCc----CCccccceeeeecchhhchhHHHHHHHHHhhh------------cCc-----------
Confidence 357888888888887775 46667777777666666666666666665432 221
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 002795 320 VLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGK 399 (880)
Q Consensus 320 ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~ 399 (880)
...|+.......+-.+- .+...+...+.+....|+-+.-.+++..+.+.+ .+++...-.+..+|.+.|+
T Consensus 67 -----s~C~NlKrVi~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~ 135 (161)
T PF09205_consen 67 -----SKCGNLKRVIECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGN 135 (161)
T ss_dssp -----GG-S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-
T ss_pred -----hhhcchHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcc
Confidence 12344444444443321 133345667777888888888888888877643 5667777778888888888
Q ss_pred HHHHHHHHHHHHHCCCC
Q 002795 400 INEAVAAVRNMEQRGVV 416 (880)
Q Consensus 400 ~~~A~~~~~~m~~~g~~ 416 (880)
..++.+++.+.-++|++
T Consensus 136 ~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 136 TREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHHTT-H
T ss_pred hhhHHHHHHHHHHhchH
Confidence 88888888888887753
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.00 E-value=12 Score=40.81 Aligned_cols=94 Identities=12% Similarity=0.076 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC
Q 002795 457 TFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD 536 (880)
Q Consensus 457 t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd 536 (880)
+++.+...|.+.+.+..|+..-+......++|+-..---..+|...|+++.|+..|+++++ +.|+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k---------------~~P~ 323 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK---------------LEPS 323 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH---------------hCCC
Confidence 4555666667777777777777776665666666666666777777777777777777777 4576
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 002795 537 EYTYSSMLEASATA--HQWEYFEYVYKGMAL 565 (880)
Q Consensus 537 ~~t~~~ll~a~~~~--~~~~~A~~l~~~m~~ 565 (880)
...-..=|..|.+. ...+...++|..|..
T Consensus 324 Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 324 NKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555544444433 223333556666553
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.00 E-value=5.5 Score=41.24 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH
Q 002795 157 AIRVLVDRLSEREMTAKNWKFVRIMNQSGL--MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL 234 (880)
Q Consensus 157 ~~~~li~~l~~~~~~~~A~~l~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~L 234 (880)
.|+..+..+ ..|++..|...|...++..- ......+--|...+...|+++.|..+|..+.+..++.. .-+...-.|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~-KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP-KAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC-CChHHHHHH
Confidence 344433333 23335555555555444220 11223333444555555555555555555544433321 222344444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 002795 235 LAILGKAGRPHEALRIFNLMLED 257 (880)
Q Consensus 235 l~~~~~~g~~~~A~~lf~~m~~~ 257 (880)
..+..+.|+.++|...|+++.++
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 44445555555555555555543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.61 E-value=15 Score=39.32 Aligned_cols=129 Identities=14% Similarity=0.231 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHh--cCC----CHHHHHHHHHHHHHCCC---CCCHH
Q 002795 280 LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACV--PSH----QWKGVFWVFKQLRKSGL---KPSAA 350 (880)
Q Consensus 280 ~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~--~~g----~~~~A~~l~~~m~~~g~---~pd~~ 350 (880)
+++...+++.|.+.| ...+..+|-+..-... ... ...+|..+|+.|++... .++..
T Consensus 78 ~~~~~~~y~~L~~~g---------------Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~ 142 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAG---------------FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDY 142 (297)
T ss_pred HHHHHHHHHHHHHhc---------------cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccch
Confidence 455667888888887 7777777766433332 233 34578999999997642 34566
Q ss_pred HHHHHHHHHHHcCC----hHHHHHHHHHHHHcCCCcc-H-HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHH
Q 002795 351 TYGLAMEVMLQSGK----YDLVHEFFRKMAKSGEAIG-A-LTYKVLVRAFWEEGK--INEAVAAVRNMEQRGVVGTASVY 422 (880)
Q Consensus 351 t~~~ll~a~~~~g~----~~~A~~l~~~m~~~g~~~d-~-~~~~~Li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~ 422 (880)
++..++.. ...+ .+.++.+|+.+.+.|+..+ . ...+.++........ ...+.++++.+.+.|+++....|
T Consensus 143 ~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~y 220 (297)
T PF13170_consen 143 PFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHY 220 (297)
T ss_pred hHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccc
Confidence 77766654 3333 3568889999998886543 2 333333332222222 45788999999999998887766
Q ss_pred HHH
Q 002795 423 YEL 425 (880)
Q Consensus 423 ~~L 425 (880)
..+
T Consensus 221 p~l 223 (297)
T PF13170_consen 221 PTL 223 (297)
T ss_pred cHH
Confidence 644
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=89.58 E-value=10 Score=36.28 Aligned_cols=87 Identities=11% Similarity=-0.009 Sum_probs=64.5
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 002795 359 MLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA 438 (880)
Q Consensus 359 ~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A 438 (880)
+...|++++|..+|.-+...+ .-|..-|..|..+|-..+++++|+..|......++. |...+-.+..+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 457899999999998888765 335666778888888889999999888876654331 111133467888888999999
Q ss_pred HHHHHHHHh
Q 002795 439 MLVVEKIKS 447 (880)
Q Consensus 439 ~~l~~~m~~ 447 (880)
...|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888888776
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.56 E-value=38 Score=37.54 Aligned_cols=131 Identities=14% Similarity=0.091 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHH
Q 002795 538 YTYSSMLEASATAHQWEYFEYVYKGMALSG-CQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLF-FTEMLI 615 (880)
Q Consensus 538 ~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g-~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~ 615 (880)
..|...+.+..+...++.|..+|-+..+.| +.+++.+++++|.-++ .|+...|..+|+.=... .||... -+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456777888888888999999999999888 5778888888886654 78888899999853332 244333 344666
Q ss_pred HHHHhCCHHHHHHHHHHhhhCCCccC--HHHHHHHHHHhhhccCHHHHHHHHHHHHhCC
Q 002795 616 QAIVQSNYEKAVALINAMAYAPFHIT--ERQWTELFESNEDRISRDKLEKLLNALCNCN 672 (880)
Q Consensus 616 ~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~~~~ll~a~~~~~~~~~a~~l~~~~~~~~ 672 (880)
-+.+-++-+.|..+|++.... +.-+ ...|..+|.--..-|++..+..+-+.+.+.-
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 677778888999999865421 1112 3455556655555666666666666655543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=88.60 E-value=45 Score=37.14 Aligned_cols=423 Identities=10% Similarity=0.038 Sum_probs=230.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCCHHH------HHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCC
Q 002795 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAA------YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE 311 (880)
Q Consensus 238 ~~~~g~~~~A~~lf~~m~~~~g~~pd~~t------~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~ 311 (880)
+-+.+++.+|.++|.++.++ ...+... -+.++++|.. .+++.....+....+. .
T Consensus 16 Lqkq~~~~esEkifskI~~e--~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~-----------------~ 75 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDE--KESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ-----------------F 75 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHH--hhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh-----------------c
Confidence 45789999999999999875 3333222 3566666654 4566666666666553 2
Q ss_pred CCHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHC--CCCCC------------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002795 312 PDLVVYNAVLNA--CVPSHQWKGVFWVFKQLRKS--GLKPS------------AATYGLAMEVMLQSGKYDLVHEFFRKM 375 (880)
Q Consensus 312 pd~~ty~~ll~~--~~~~g~~~~A~~l~~~m~~~--g~~pd------------~~t~~~ll~a~~~~g~~~~A~~l~~~m 375 (880)
| ...|-.+..+ +-+.+.+.+|++.+..-... +-.|. -..=+..++.+...|++.+++.++++|
T Consensus 76 ~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 76 G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 2 2234444444 45788899999888766543 32221 111244567778999999999999998
Q ss_pred HHcCC----CccHHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHH
Q 002795 376 AKSGE----AIGALTYKVLVRAFWEEGK---------------INEAVAAVRNMEQR------GVVGTASVYYELACCLC 430 (880)
Q Consensus 376 ~~~g~----~~d~~~~~~Li~~~~~~g~---------------~~~A~~~~~~m~~~------g~~p~~~t~~~Li~~~~ 430 (880)
...=+ .-+..+||.++-++++.-- ++.+.-+..+|... .+.|.......++.-..
T Consensus 155 ~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 155 IERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHH
Confidence 86533 3688899987777765421 12222223333222 22333333333333322
Q ss_pred hCC--CHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHHHhc
Q 002795 431 NNG--RWQDAMLVVEKIKSLRHSKPLEI-TFTGLIISSMDGGHIDDCISIFQHMKD-----HCEPNIGTVNAMLKVYSRN 502 (880)
Q Consensus 431 ~~g--~~~~A~~l~~~m~~~~~~~p~~~-t~~~ll~a~~~~g~~~~A~~i~~~m~~-----~~~pd~~~~~~Li~~~~~~ 502 (880)
-.. +..--++++....+ .-+.|+.. ....++..+.+ +.+++..+-+.+.. -...-+.++..++...++.
T Consensus 235 i~p~e~l~~~mq~l~~We~-~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWEN-FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred hCCHhhccHHHHHHHHHHh-hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11122233333322 34556543 23344444443 44555444444332 1223467889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHH-------HHHHH----HcCCHHHHHHHHHHHHHCCCCCC
Q 002795 503 DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSM-------LEASA----TAHQWEYFEYVYKGMALSGCQLD 571 (880)
Q Consensus 503 g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~l-------l~a~~----~~~~~~~A~~l~~~m~~~g~~pd 571 (880)
+...+|.+.+.-+.. +.|+...-.-+ -+..+ ..-++..-+.+|.......+.--
T Consensus 312 ~~T~~a~q~l~lL~~---------------ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq 376 (549)
T PF07079_consen 312 VQTEEAKQYLALLKI---------------LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ 376 (549)
T ss_pred HhHHHHHHHHHHHHh---------------cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH
Confidence 999999999988776 34543321111 11111 11234555666766655433322
Q ss_pred HHHHHHHHHH--HHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHHh----CCHHHHHHHHHHhhhCCCcc
Q 002795 572 QTKHAWLLVE--ASRAGK-CHLLEHAFDSLLEAGEIPHPLFFTEMLI----QAIVQ----SNYEKAVALINAMAYAPFHI 640 (880)
Q Consensus 572 ~~~~~~ll~~--~~~~G~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~----~~~~~----g~~~~A~~l~~~m~~~~~~p 640 (880)
.-+...+-.+ +-+.|. -+.|.++++.+..- .|...-..+.+. ..+++ ..+.+-+.+-+-+...|+.|
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 2222222222 556665 77888998887762 333322222322 22222 22444444444445667666
Q ss_pred CHH----HHHHHHHH--hhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHhccchhhhhhhcccc
Q 002795 641 TER----QWTELFES--NEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFG 706 (880)
Q Consensus 641 ~~~----~~~~ll~a--~~~~~~~~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~ 706 (880)
-.+ .-+.|-.| .-..|++.++.-.-..+.+.. |+..+.+ .+.-++....++.||-..+...
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~ia--PS~~~~R---LlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA--PSPQAYR---LLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--CcHHHHH---HHHHHHHHHhhHHHHHHHHHhC
Confidence 433 23333333 346788888887777777755 4333333 2344556677888887665553
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.56 E-value=33 Score=36.05 Aligned_cols=144 Identities=14% Similarity=0.037 Sum_probs=85.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 002795 198 KGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV 277 (880)
Q Consensus 198 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~ 277 (880)
......|++.+|..+|..+....+. +..+--.|..+|...|+++.|..++..++.+. -.........-|..+.+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~----~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE----NSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQA 216 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc----cchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHH
Confidence 3455678888899988888776553 34566678888889999999999999887641 111111112233444444
Q ss_pred CCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHH
Q 002795 278 GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL-KPSAATYGLAM 356 (880)
Q Consensus 278 g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll 356 (880)
....+...+-..... .+-|...-..+-..+...|+.+.|++.+-.+.+... .-|...-..++
T Consensus 217 a~~~~~~~l~~~~aa-----------------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ll 279 (304)
T COG3118 217 AATPEIQDLQRRLAA-----------------DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLL 279 (304)
T ss_pred hcCCCHHHHHHHHHh-----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 444444444444433 233555666666777788888888877666654321 12333445555
Q ss_pred HHHHHcC
Q 002795 357 EVMLQSG 363 (880)
Q Consensus 357 ~a~~~~g 363 (880)
..+.-.|
T Consensus 280 e~f~~~g 286 (304)
T COG3118 280 ELFEAFG 286 (304)
T ss_pred HHHHhcC
Confidence 5555444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.54 E-value=7.5 Score=40.27 Aligned_cols=96 Identities=16% Similarity=0.251 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 002795 351 TYGLAMEVMLQSGKYDLVHEFFRKMAKSGE--AIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT--ASVYYELA 426 (880)
Q Consensus 351 t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~--~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~Li 426 (880)
.|+..+. +.+.|++..|...|...++... ......+-.|..++...|++++|..+|..+.+.-.... ...+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444333 2344455555555555555421 01122333355555555555555555555554322111 12233344
Q ss_pred HHHHhCCCHHHHHHHHHHHHh
Q 002795 427 CCLCNNGRWQDAMLVVEKIKS 447 (880)
Q Consensus 427 ~~~~~~g~~~~A~~l~~~m~~ 447 (880)
.+..+.|+.++|...|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 444455555555555555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.40 E-value=7.1 Score=42.59 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 002795 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRA 393 (880)
Q Consensus 314 ~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~ 393 (880)
..+++.+.-+|.+.+.+..|+..-++.+..+ .+|....---..+|...|+++.|+..|+.+++.. +-|..+-+-|+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456666677777777877777777777654 3466665556677777777778888777777753 3334444444444
Q ss_pred HHhcCCHH-HHHHHHHHHHH
Q 002795 394 FWEEGKIN-EAVAAVRNMEQ 412 (880)
Q Consensus 394 ~~~~g~~~-~A~~~~~~m~~ 412 (880)
--+..... ...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44433333 33566666653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.03 E-value=24 Score=34.03 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=9.6
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q 002795 239 GKAGRPHEALRIFNLMLED 257 (880)
Q Consensus 239 ~~~g~~~~A~~lf~~m~~~ 257 (880)
++.+..++|+.-|..+.+.
T Consensus 69 A~~~k~d~Alaaf~~lekt 87 (221)
T COG4649 69 AQENKTDDALAAFTDLEKT 87 (221)
T ss_pred HHcCCchHHHHHHHHHHhc
Confidence 3445555555555555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=87.93 E-value=12 Score=35.90 Aligned_cols=93 Identities=11% Similarity=0.014 Sum_probs=69.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHH
Q 002795 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILG 239 (880)
Q Consensus 160 ~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~ 239 (880)
...-.+-..|++++|..+|+-+.-.+ +-+..-+..|...+-..+.+++|...|.......+..+ ..+-....+|.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp----~p~f~agqC~l 116 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY----RPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC----CccchHHHHHH
Confidence 34445557899999999998888766 34555567777777778899999999988766654333 33445566788
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 002795 240 KAGRPHEALRIFNLMLED 257 (880)
Q Consensus 240 ~~g~~~~A~~lf~~m~~~ 257 (880)
..|+.+.|+..|.....+
T Consensus 117 ~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 117 LMRKAAKARQCFELVNER 134 (165)
T ss_pred HhCCHHHHHHHHHHHHhC
Confidence 889999999999888874
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.86 E-value=29 Score=34.04 Aligned_cols=189 Identities=14% Similarity=0.066 Sum_probs=110.7
Q ss_pred CCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCCHHHHH
Q 002795 327 SHQWKGVFWVFKQLRKSGLK-PSAATYGLAMEVMLQSGKYDLVHEFFRKMAKS-GEAIGALTYKVLVRAFWEEGKINEAV 404 (880)
Q Consensus 327 ~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~-g~~~d~~~~~~Li~~~~~~g~~~~A~ 404 (880)
.+....+...+..+...... .....+......+...+.+..+...+...... ........+..+...+...+.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34455555555555543322 12456666677777777777777777776652 22344566666677777777777888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002795 405 AAVRNMEQRGVVGTASVYYELAC-CLCNNGRWQDAMLVVEKIKSLRHS--KPLEITFTGLIISSMDGGHIDDCISIFQHM 481 (880)
Q Consensus 405 ~~~~~m~~~g~~p~~~t~~~Li~-~~~~~g~~~~A~~l~~~m~~~~~~--~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m 481 (880)
..+.........+... ...... .+...|+++.|...+.+... ... ......+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDPDLA-EALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCcchH-HHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 8877777655443211 222222 56777777777777777643 111 112223333333355566666666666666
Q ss_pred hhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 482 KDHCEP-NIGTVNAMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 482 ~~~~~p-d~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 517 (880)
....+. ....+..+...+...+.+..|...+.....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 664444 455666666666666666666666666666
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.71 E-value=21 Score=33.33 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCC
Q 002795 155 AEAIRVLVDRLSEREMTAKNWKFVRIMNQSGL--MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKS 227 (880)
Q Consensus 155 ~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d 227 (880)
...|.. .....+.|++++|.+.|+.+..+-- +.....-..++.++-+.++++.|...++..++..|....-+
T Consensus 11 ~~ly~~-a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 11 QELYQE-AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred HHHHHH-HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 344444 4445578999999999999987431 24556778889999999999999999999999887654444
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.60 E-value=55 Score=36.98 Aligned_cols=200 Identities=12% Similarity=0.072 Sum_probs=144.6
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHH
Q 002795 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVL 390 (880)
Q Consensus 311 ~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~L 390 (880)
..|....-+++..+..+-.+.-+..+..+|...| -+...|-.++.+|... .-+.-..+++++++..+ |-.+..--
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHH
Confidence 4456667788999999999999999999999865 4777889999999988 55677888998888753 34444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 002795 391 VRAFWEEGKINEAVAAVRNMEQRGVV-----GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISS 465 (880)
Q Consensus 391 i~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~ 465 (880)
+..+...++...+..+|.+...+=+. .-...|.-|+.. -..+.+..+.+...+....|...-.+.+--+-.-|
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44444559999999999998765332 112345555431 24567777788888777556555566777777889
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHH
Q 002795 466 MDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR--------------------NDMFSKAKELFEETTR 517 (880)
Q Consensus 466 ~~~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~--------------------~g~~~~A~~lf~~m~~ 517 (880)
....++++|++++..+.++...|...-..++.-+-. -.++.+|+.=|+....
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~ 287 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMH 287 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHhe
Confidence 999999999999999988766777776666665543 3456677777776654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.33 E-value=45 Score=35.71 Aligned_cols=136 Identities=16% Similarity=0.237 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHH
Q 002795 244 PHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ--VG----LLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY 317 (880)
Q Consensus 244 ~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~--~g----~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty 317 (880)
+++.+.+++.|.+. |+.-+..+|-+....... .. ....|..+|+.|++.... ...++-.++
T Consensus 78 ~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f------------LTs~~D~~~ 144 (297)
T PF13170_consen 78 FKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF------------LTSPEDYPF 144 (297)
T ss_pred HHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc------------ccCccchhH
Confidence 34566788888887 888888887664333333 22 346789999999986411 135677777
Q ss_pred HHHHHHHhcCCCH----HHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCccHHHHHH
Q 002795 318 NAVLNACVPSHQW----KGVFWVFKQLRKSGLKPSA--ATYGLAMEVMLQSGK--YDLVHEFFRKMAKSGEAIGALTYKV 389 (880)
Q Consensus 318 ~~ll~~~~~~g~~----~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~--~~~A~~l~~~m~~~g~~~d~~~~~~ 389 (880)
..++.. ...+. +.+..+|+.+.+.|+..+. ...+.++..+..... ...+..+++.+.+.|+++....|..
T Consensus 145 a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 145 AALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 787765 33333 5678889999998887643 333444433322222 4578899999999998887777665
Q ss_pred HHHHH
Q 002795 390 LVRAF 394 (880)
Q Consensus 390 Li~~~ 394 (880)
+.-..
T Consensus 223 lGlLa 227 (297)
T PF13170_consen 223 LGLLA 227 (297)
T ss_pred HHHHH
Confidence 54433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.15 E-value=43 Score=35.27 Aligned_cols=143 Identities=11% Similarity=0.052 Sum_probs=90.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002795 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352 (880)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 352 (880)
.....|++.+|..+|...... .+-+...--.+..+|...|+.+.|..++..+...--.......
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~----------------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l 206 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA----------------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGL 206 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh----------------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHH
Confidence 456778888888888888775 3344555666777888888888888888887543222222222
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh
Q 002795 353 GLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVV-GTASVYYELACCLCN 431 (880)
Q Consensus 353 ~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~Li~~~~~ 431 (880)
..-|..+.+.....+...+-...-.. +-|...-..+...|...|+.+.|.+.+-.+.+++.. -|...-..|+..+.-
T Consensus 207 ~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 207 QAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence 23345555555555555555555443 336777777888888889999888887777765321 123334455555554
Q ss_pred CC
Q 002795 432 NG 433 (880)
Q Consensus 432 ~g 433 (880)
.|
T Consensus 285 ~g 286 (304)
T COG3118 285 FG 286 (304)
T ss_pred cC
Confidence 44
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.56 E-value=82 Score=37.89 Aligned_cols=183 Identities=9% Similarity=0.110 Sum_probs=115.1
Q ss_pred CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhCCCHHHHHHHHHHHHhCcCCCCCCC
Q 002795 152 RSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGL----GDKGSWRQAMSVLDWVYGLKDKRDLKS 227 (880)
Q Consensus 152 ~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~----~~~g~~~~A~~l~~~~~~~~~~~~~~d 227 (880)
+-.......-++.+++...+.-|+.+-+. .+ .+..+...+...| -+.|++++|..-+-+.+..- .|
T Consensus 331 ~L~ek~le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l----e~- 400 (933)
T KOG2114|consen 331 ELIEKDLETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL----EP- 400 (933)
T ss_pred eeeeccHHHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC----Ch-
Confidence 33445667788899999999999877554 33 3445555555444 57899999998887665322 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCC
Q 002795 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (880)
Q Consensus 228 ~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~ 307 (880)
..++.-|....+..+-..+++.+.+. |+ .+...-+.|+.+|.+.++.++-.++..... .|.
T Consensus 401 ----s~Vi~kfLdaq~IknLt~YLe~L~~~-gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~------------ 461 (933)
T KOG2114|consen 401 ----SEVIKKFLDAQRIKNLTSYLEALHKK-GL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGE------------ 461 (933)
T ss_pred ----HHHHHHhcCHHHHHHHHHHHHHHHHc-cc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccc------------
Confidence 23455566666777777788888886 44 234445678999999999988776665543 220
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002795 308 PVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMA 376 (880)
Q Consensus 308 ~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~ 376 (880)
. ..-....+..|.+.+-.++|..+-..... +......++ -..+++++|.+.+..+.
T Consensus 462 --~---~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 462 --W---FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred --e---eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 1 11134456666666767776654443321 333333333 45688889988887653
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.50 E-value=32 Score=33.21 Aligned_cols=102 Identities=19% Similarity=0.192 Sum_probs=62.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002795 175 WKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLM 254 (880)
Q Consensus 175 ~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m 254 (880)
++.++.+.+.+++|+...+..+++.+.+.|++..-.+++..= -..++..+-..|++. .+....+.++=-+|
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~------Vi~DSk~lA~~LLs~---~~~~~~~~Ql~lDM 84 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYH------VIPDSKPLACQLLSL---GNQYPPAYQLGLDM 84 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhc------ccCCcHHHHHHHHHh---HccChHHHHHHHHH
Confidence 455667777888888888888888888888887777766521 122333333333332 22334444444444
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002795 255 LEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290 (880)
Q Consensus 255 ~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m 290 (880)
.++ =...+..++..+...|++-+|+.+....
T Consensus 85 LkR-----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 85 LKR-----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHH-----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 443 1114556667777788888888777665
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.12 E-value=27 Score=31.94 Aligned_cols=92 Identities=13% Similarity=0.008 Sum_probs=69.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-
Q 002795 497 KVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK- 574 (880)
Q Consensus 497 ~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd~~~- 574 (880)
-+++..|+.+.|++.|.+.+.. -| ....||.-..++.-.|+.++|+.=+++..+..-.-....
T Consensus 51 valaE~g~Ld~AlE~F~qal~l---------------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtac 115 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL---------------APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC 115 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh---------------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHH
Confidence 3567889999999999999884 35 778999999999999999999999988876522223222
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 002795 575 --HAWLLVEASRAGKCHLLEHAFDSLLEAGE 603 (880)
Q Consensus 575 --~~~ll~~~~~~G~~~~A~~~~~~m~~~g~ 603 (880)
|..--..|-..|+-+.|..=|+...+.|.
T Consensus 116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 116 QAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 22222236778999999998887776553
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.95 E-value=36 Score=33.27 Aligned_cols=202 Identities=15% Similarity=0.124 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 002795 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKS-GLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVR 392 (880)
Q Consensus 314 ~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~ 392 (880)
...+......+...+.+..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 445555555566666666666665555432 122334444455555555566666666666666543222 112222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHh
Q 002795 393 -AFWEEGKINEAVAAVRNMEQRGV--VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP--LEITFTGLIISSMD 467 (880)
Q Consensus 393 -~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p--~~~t~~~ll~a~~~ 467 (880)
.+...|+++.|...|.+...... ......+......+...++.+.+...+..... ..+ ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHH
Confidence 56677777777777777644221 11223333334445667777888887777766 222 24566667777777
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002795 468 GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 519 (880)
Q Consensus 468 ~g~~~~A~~i~~~m~~~~~pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 519 (880)
.+..+.+...+.......+.....+..+...+...+..+++...+.......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7788888888887777433334455555555556677888888888887743
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.92 E-value=46 Score=34.37 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=44.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002795 460 GLIISSMDGGHIDDCISIFQHMKDHCE---PNIGTVNAMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 460 ~ll~a~~~~g~~~~A~~i~~~m~~~~~---pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 517 (880)
.+..-|.+.|.+..|..-++.|.+..+ -....+-.|..+|-+.|-.++|...-.-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 345668889999999999999988532 3345666778889999999988887666555
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.79 E-value=75 Score=36.73 Aligned_cols=169 Identities=9% Similarity=-0.047 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002795 487 PNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALS 566 (880)
Q Consensus 487 pd~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~ 566 (880)
++..+|+..+.--...|+++.+.-+|++..-- +..-...|-..+.-....|+...|..++....+-
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~--------------cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i 360 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP--------------CALYDEFWIKYARWMESSGDVSLANNVLARACKI 360 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--------------HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh
Confidence 45677888888778888888888888877541 2223334555555555557777777666655443
Q ss_pred CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHhCCHHHHH---HHHHHhhhCCCcc
Q 002795 567 GCQ--LDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFT-EMLIQAIVQSNYEKAV---ALINAMAYAPFHI 640 (880)
Q Consensus 567 g~~--pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~A~---~l~~~m~~~~~~p 640 (880)
-++ |....+.+.+ .-..|++..|..+++.+.+.- |..+... .-+....+.|+.+.+. .++.........+
T Consensus 361 ~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~ 436 (577)
T KOG1258|consen 361 HVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENN 436 (577)
T ss_pred cCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCc
Confidence 222 2222222222 234578888888888776642 4332221 1233344556666666 4443333211111
Q ss_pred CH--HHHHHHHH-HhhhccCHHHHHHHHHHHHhCCC
Q 002795 641 TE--RQWTELFE-SNEDRISRDKLEKLLNALCNCNA 673 (880)
Q Consensus 641 ~~--~~~~~ll~-a~~~~~~~~~a~~l~~~~~~~~~ 673 (880)
.. ..+..... .+.-.++.+.|..++..+.+..+
T Consensus 437 ~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~ 472 (577)
T KOG1258|consen 437 GILEKLYVKFARLRYKIREDADLARIILLEANDILP 472 (577)
T ss_pred chhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCC
Confidence 11 11111111 12334566677777777666554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.79 E-value=13 Score=39.52 Aligned_cols=153 Identities=7% Similarity=-0.042 Sum_probs=94.1
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCHHHH----HHHHHHHHhcCC
Q 002795 429 LCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTV----NAMLKVYSRNDM 504 (880)
Q Consensus 429 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~a~~~~g~~~~A~~i~~~m~~~~~pd~~~~----~~Li~~~~~~g~ 504 (880)
+--.|+..+|-..++++.+ ..+.|..++.-.=.+|...|+.+.-...++++.....+|...| ..+.-++..+|.
T Consensus 113 ~~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3456777777777888776 3444556666666788888888888888888776544444322 333444556888
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 002795 505 FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD---QTKHAWLLVE 581 (880)
Q Consensus 505 ~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd---~~~~~~ll~~ 581 (880)
+++|.+.-++..+.+ +.|...-.++...+...++..++.++..+-...--..+ ..-|-...-.
T Consensus 191 y~dAEk~A~ralqiN--------------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~ 256 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN--------------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALF 256 (491)
T ss_pred chhHHHHHHhhccCC--------------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHh
Confidence 888888888877743 23656666666666677888888776554322100000 1112222223
Q ss_pred HHHcCCHHHHHHHHHH
Q 002795 582 ASRAGKCHLLEHAFDS 597 (880)
Q Consensus 582 ~~~~G~~~~A~~~~~~ 597 (880)
+...+.++.|+++|+.
T Consensus 257 ~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 257 HIEGAEYEKALEIYDR 272 (491)
T ss_pred hhcccchhHHHHHHHH
Confidence 4455777777777774
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=85.53 E-value=55 Score=36.86 Aligned_cols=112 Identities=13% Similarity=0.031 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 002795 503 DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVE 581 (880)
Q Consensus 503 g~~~~A~~lf~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~ 581 (880)
....+|.++-++..+.+ .-|......+..+....++++.|..+|++... +.|| ..+|...-..
T Consensus 318 ~~~~~a~~~A~rAveld--------------~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~ 381 (458)
T PRK11906 318 LAAQKALELLDYVSDIT--------------TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALV 381 (458)
T ss_pred HHHHHHHHHHHHHHhcC--------------CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHH
Confidence 34567777777777754 23777777777777777788888888888775 5676 3444444444
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHhCCHHHHHHHHHHh
Q 002795 582 ASRAGKCHLLEHAFDSLLEAGEIPHPLFF---TEMLIQAIVQSNYEKAVALINAM 633 (880)
Q Consensus 582 ~~~~G~~~~A~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~g~~~~A~~l~~~m 633 (880)
+..+|+.++|.+.+++..+.. |..... ...+..|+ ...+++|+.++-+-
T Consensus 382 ~~~~G~~~~a~~~i~~alrLs--P~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 433 (458)
T PRK11906 382 HFHNEKIEEARICIDKSLQLE--PRRRKAVVIKECVDMYV-PNPLKNNIKLYYKE 433 (458)
T ss_pred HHHcCCHHHHHHHHHHHhccC--chhhHHHHHHHHHHHHc-CCchhhhHHHHhhc
Confidence 566788888888888866532 432222 11222332 34567777776543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.41 E-value=22 Score=33.24 Aligned_cols=83 Identities=14% Similarity=0.097 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 002795 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV 270 (880)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~l 270 (880)
..|..- ....+.|+++.|.+.|+.+...-|.+. -...+.-.|+.+|.+.+++++|...+++..+.....|+ +-|...
T Consensus 12 ~ly~~a-~~~l~~~~Y~~A~~~le~L~~ryP~g~-ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y 88 (142)
T PF13512_consen 12 ELYQEA-QEALQKGNYEEAIKQLEALDTRYPFGE-YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYY 88 (142)
T ss_pred HHHHHH-HHHHHhCCHHHHHHHHHHHHhcCCCCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHH
Confidence 344444 444577999999999999987765433 35578888999999999999999999999986444444 344444
Q ss_pred HHHHHh
Q 002795 271 AVTLGQ 276 (880)
Q Consensus 271 l~~~~~ 276 (880)
+.+++.
T Consensus 89 ~~gL~~ 94 (142)
T PF13512_consen 89 MRGLSY 94 (142)
T ss_pred HHHHHH
Confidence 555443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.26 E-value=49 Score=35.28 Aligned_cols=153 Identities=11% Similarity=0.091 Sum_probs=110.3
Q ss_pred hcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH--HHH-
Q 002795 276 QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA--ATY- 352 (880)
Q Consensus 276 ~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~- 352 (880)
..|...+|...++++.+. .+.|..+++..=.+|.-+|+...-...+++..-. ..||. .+|
T Consensus 115 ~~g~~h~a~~~wdklL~d----------------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv 177 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD----------------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYV 177 (491)
T ss_pred ccccccHHHHHHHHHHHh----------------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHH
Confidence 467888888888888876 7889999999999999999999999999888643 12333 223
Q ss_pred -HHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 002795 353 -GLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT---ASVYYELACC 428 (880)
Q Consensus 353 -~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~Li~~ 428 (880)
....-++..+|-+++|++.-++..+.+ +.|.-.-.++...+-..|++.++.++..+-...--..+ ..-|-...-.
T Consensus 178 ~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~ 256 (491)
T KOG2610|consen 178 HGMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALF 256 (491)
T ss_pred HHHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHh
Confidence 333334468899999999999888876 56777778888888899999999988776443211111 0112223334
Q ss_pred HHhCCCHHHHHHHHHHHH
Q 002795 429 LCNNGRWQDAMLVVEKIK 446 (880)
Q Consensus 429 ~~~~g~~~~A~~l~~~m~ 446 (880)
+...+.++.|+.+|+.-.
T Consensus 257 ~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 257 HIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhcccchhHHHHHHHHHH
Confidence 567789999999998643
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.73 E-value=18 Score=41.47 Aligned_cols=134 Identities=14% Similarity=0.052 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH
Q 002795 155 AEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL 234 (880)
Q Consensus 155 ~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~L 234 (880)
.+.-..+++.+.+.|..++|+++ .+|... -.....+.|+++.|.++..+. .+..-|..|
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~---------~s~~Kw~~L 672 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA---------NSEVKWRQL 672 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh---------cchHHHHHH
Confidence 45667888888888888888755 223221 233445678899998887655 456779999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCH
Q 002795 235 LAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL 314 (880)
Q Consensus 235 l~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~ 314 (880)
..+..+.|++..|.+.|..... |..|+-.+...|+-+....+-....+.| .
T Consensus 673 g~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g----------------~--- 723 (794)
T KOG0276|consen 673 GDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQG----------------K--- 723 (794)
T ss_pred HHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhc----------------c---
Confidence 9999999999999999887653 5667777777888776666655565554 1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHH
Q 002795 315 VVYNAVLNACVPSHQWKGVFWVFKQL 340 (880)
Q Consensus 315 ~ty~~ll~~~~~~g~~~~A~~l~~~m 340 (880)
.|...-+|...|+++++++++..-
T Consensus 724 --~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 --NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --cchHHHHHHHcCCHHHHHHHHHhc
Confidence 233344566778999888777553
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.68 E-value=9 Score=40.26 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCCHH
Q 002795 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE----DCNLYPDIA 265 (880)
Q Consensus 190 ~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~----~~g~~pd~~ 265 (880)
..++..++..+...|+++.+...++..+...+ -+...|..++.+|.+.|+...|+..|+.+.. ..|+.|-..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp----~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~ 228 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP----YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPE 228 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc----cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHH
Confidence 35667788888888999999999998887654 6778899999999999999999998888765 357888877
Q ss_pred HHHHHHHH
Q 002795 266 AYHSVAVT 273 (880)
Q Consensus 266 t~~~ll~~ 273 (880)
+.......
T Consensus 229 ~~~~y~~~ 236 (280)
T COG3629 229 LRALYEEI 236 (280)
T ss_pred HHHHHHHH
Confidence 77665554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.24 E-value=3 Score=30.16 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCc
Q 002795 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLK 220 (880)
Q Consensus 192 ~~~~ll~~~~~~g~~~~A~~l~~~~~~~~ 220 (880)
++..+...|...|++++|.++|+.+++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34445555555555555555555555543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.06 E-value=97 Score=35.85 Aligned_cols=97 Identities=14% Similarity=0.184 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCC
Q 002795 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLG-QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPV 309 (880)
Q Consensus 231 ~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~-~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~ 309 (880)
|-.....=.+.|..+.+.++|++-.. +++-+...|...+..+. ..|+.+.....|+......+.
T Consensus 82 W~kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~------------- 146 (577)
T KOG1258|consen 82 WKKFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL------------- 146 (577)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc-------------
Confidence 33444444455666666666666665 45555555555444332 335555555666655543211
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 002795 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (880)
Q Consensus 310 ~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~ 342 (880)
.-.....|...|.--..++++.....+|++.++
T Consensus 147 dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 147 DFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred chhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 122334455555555566666666666666654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=83.06 E-value=29 Score=33.18 Aligned_cols=15 Identities=13% Similarity=0.556 Sum_probs=6.6
Q ss_pred cCCCHHHHHHHHHHH
Q 002795 326 PSHQWKGVFWVFKQL 340 (880)
Q Consensus 326 ~~g~~~~A~~l~~~m 340 (880)
+.|+|.+|..+|+++
T Consensus 56 ~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 56 VRGDWDDALRLLREL 70 (160)
T ss_pred HhCCHHHHHHHHHHH
Confidence 344444444444444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=82.96 E-value=25 Score=37.78 Aligned_cols=208 Identities=12% Similarity=0.073 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC---H
Q 002795 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKS---RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD---I 264 (880)
Q Consensus 191 ~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d---~~~~~~Ll~~~~~~g~~~~A~~lf~~m~~~~g~~pd---~ 264 (880)
.+|..+..+.++.|.+++++..--..+..-.. ...+ ..+|-.|..++-+.-++.+++.+-..-...+|..|. -
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~-~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g 122 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARE-LEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG 122 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc
Confidence 34555666666666666654432211111000 0011 234555556666666666666666555554444441 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH---
Q 002795 265 AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLR--- 341 (880)
Q Consensus 265 ~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~--- 341 (880)
....++..++...+.++++++.|+...+.... .=| .-.....|-.|-+.|.+..|+++|+-+..+..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~--------~~D--~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv 192 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHN--------NDD--AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV 192 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhc--------cCC--ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence 22334555666667777787777776543200 000 11123356667777777777777766555443
Q ss_pred -HCCCCCCHHHHHH-----HHHHHHHcCChHHHHHHHHHHHH----cCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002795 342 -KSGLKPSAATYGL-----AMEVMLQSGKYDLVHEFFRKMAK----SGEA-IGALTYKVLVRAFWEEGKINEAVAAVRN 409 (880)
Q Consensus 342 -~~g~~pd~~t~~~-----ll~a~~~~g~~~~A~~l~~~m~~----~g~~-~d~~~~~~Li~~~~~~g~~~~A~~~~~~ 409 (880)
..++.-=..-|.. +.-++...|.+..|.+.-++..+ .|-. .-....-.+.+.|-..|+.+.|+.-|+.
T Consensus 193 ~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 193 NSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 2222211111211 22334455555555555544332 2211 1122333445555556666665555544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.71 E-value=12 Score=39.47 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--
Q 002795 265 AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK-- 342 (880)
Q Consensus 265 ~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~-- 342 (880)
.++..++..+...|+++.+.+.++++... .+-|...|..+|.+|.+.|+...|+..|+.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~----------------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL----------------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc----------------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 35666777788888888888888888876 567888888899999999998888888888764
Q ss_pred ---CCCCCCHHHHHHHHHH
Q 002795 343 ---SGLKPSAATYGLAMEV 358 (880)
Q Consensus 343 ---~g~~pd~~t~~~ll~a 358 (880)
.|+.|...+......+
T Consensus 218 ~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 218 AEELGIDPAPELRALYEEI 236 (280)
T ss_pred hhhcCCCccHHHHHHHHHH
Confidence 5777776665544443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=82.57 E-value=63 Score=36.40 Aligned_cols=161 Identities=13% Similarity=0.145 Sum_probs=95.6
Q ss_pred HHH--HHHHHHHhcC-----CCHHHHHHHHHHHH-HCCCCCC-HHHHHHHHHHHHH---------cCChHHHHHHHHHHH
Q 002795 315 VVY--NAVLNACVPS-----HQWKGVFWVFKQLR-KSGLKPS-AATYGLAMEVMLQ---------SGKYDLVHEFFRKMA 376 (880)
Q Consensus 315 ~ty--~~ll~~~~~~-----g~~~~A~~l~~~m~-~~g~~pd-~~t~~~ll~a~~~---------~g~~~~A~~l~~~m~ 376 (880)
..| ..++.+.... ...+.|+.+|.+.. ...+.|+ ...|..+..++.. .....+|.++-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 6666665442 23467888888887 3335565 3344443333221 223456777777777
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCHH
Q 002795 377 KSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI 456 (880)
Q Consensus 377 ~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~ 456 (880)
+.+ +.|..+...+..+.+-.|+++.|...|++....++. ...+|......+.-+|+.++|...+++..+ ..|...
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr---LsP~~~ 406 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ---LEPRRR 406 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cCchhh
Confidence 776 557777777777777788888888888888776543 234454455556678888888888888665 334322
Q ss_pred ---HHHHHHHHHHhCCCHHHHHHHHHHH
Q 002795 457 ---TFTGLIISSMDGGHIDDCISIFQHM 481 (880)
Q Consensus 457 ---t~~~ll~a~~~~g~~~~A~~i~~~m 481 (880)
..-..+..|+. ..++.|+++|-+-
T Consensus 407 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 433 (458)
T PRK11906 407 KAVVIKECVDMYVP-NPLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHHHHcC-CchhhhHHHHhhc
Confidence 22222334443 3455555555443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.11 E-value=9.8 Score=37.34 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 002795 266 AYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (880)
Q Consensus 266 t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~ 342 (880)
.+..+...|++.|+.+.|++.|.++...... ...-+..+-.+|..+.-.+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTS-------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4556666677777777777777776654310 222334556667777777777777777666643
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.03 E-value=97 Score=35.10 Aligned_cols=71 Identities=7% Similarity=-0.070 Sum_probs=52.7
Q ss_pred CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhCcC
Q 002795 150 RWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGD-KGSWRQAMSVLDWVYGLKD 221 (880)
Q Consensus 150 ~~~~~~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~-~g~~~~A~~l~~~~~~~~~ 221 (880)
...+|+..|..-+.-+.+.+.+.+.-.+|..|.... +.++..|.......-. ..+.+.|+.+|..-++..+
T Consensus 100 rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~np 171 (568)
T KOG2396|consen 100 RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNP 171 (568)
T ss_pred hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCC
Confidence 455688888888888888888999999999999865 4555666554444433 3449999999998877655
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.68 E-value=12 Score=37.17 Aligned_cols=76 Identities=13% Similarity=0.028 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002795 172 AKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEAL 248 (880)
Q Consensus 172 ~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~~~~~~~~~~~~d~~~~~~Ll~~~~~~g~~~~A~ 248 (880)
+.|+..|-.+...+.--++.....|...|. ..+.++|..++-.++.........|+.++.+|++.|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345555555555554444444444444444 4666777777777666665554566777777777777777766653
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.60 E-value=11 Score=43.00 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH
Q 002795 351 TYGLAMEVMLQSGKYDLVHEFFR 373 (880)
Q Consensus 351 t~~~ll~a~~~~g~~~~A~~l~~ 373 (880)
-|..|..+..+.+++..|.+.|.
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~ 690 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFL 690 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHH
Confidence 34444444444444444444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=81.51 E-value=27 Score=33.40 Aligned_cols=110 Identities=13% Similarity=0.051 Sum_probs=69.3
Q ss_pred HHHhcCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 002795 322 NACVPSHQWKGVFWVFKQLRKSGLKPSA---ATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEG 398 (880)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g~~~d~~~~~~Li~~~~~~g 398 (880)
..-.+.++.+.+..++..|+.. .|.. .++-.. .+...|++.+|.++|+.+.... |......+|+..|....
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHc
Confidence 3345778999999999999864 4543 333333 3578999999999999988764 44444555665555444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 002795 399 KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAML 440 (880)
Q Consensus 399 ~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~ 440 (880)
.-..=..+-+++.+.+..|+.. .++..+........|..
T Consensus 92 ~D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 92 GDPSWRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred CChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence 3333333444566666555443 36666666555554443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=81.15 E-value=1.2e+02 Score=36.18 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCCHHHHHHHHHHHhcCCCH-------HHHHHHHHHHH
Q 002795 269 SVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQW-------KGVFWVFKQLR 341 (880)
Q Consensus 269 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~-------~~A~~l~~~m~ 341 (880)
.+|-.|.++|++++|.++....... .......+-..+..|+...+- +....-|++..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~----------------~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~ 179 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ----------------FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRI 179 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG----------------S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh----------------hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 5667788999999999999665544 344444555666666554222 34444555554
Q ss_pred HC
Q 002795 342 KS 343 (880)
Q Consensus 342 ~~ 343 (880)
+.
T Consensus 180 r~ 181 (613)
T PF04097_consen 180 RN 181 (613)
T ss_dssp TT
T ss_pred cC
Confidence 43
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.22 E-value=9.1 Score=40.20 Aligned_cols=105 Identities=10% Similarity=0.153 Sum_probs=72.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCchhHhhhhhhcCCCCCCCC--HHHHHHHHHHHhcCCCHHHHHHH
Q 002795 259 NLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD--LVVYNAVLNACVPSHQWKGVFWV 336 (880)
Q Consensus 259 g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd--~~ty~~ll~~~~~~g~~~~A~~l 336 (880)
|.+....+...++..-....+++.+...+-.++...... ..|+ .++|-.++. .-+.++++.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~------------~~~~~~~~~~irlll----ky~pq~~i~~ 122 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAW------------YLRNWTIHTWIRLLL----KYDPQKAIYT 122 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchh------------hhccccHHHHHHHHH----ccChHHHHHH
Confidence 555566666666666666677888888777776553211 2222 333333322 3456788888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002795 337 FKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSG 379 (880)
Q Consensus 337 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~g 379 (880)
+..=...|+-||.++++.+|..+.+.+++..|.++...|....
T Consensus 123 l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 123 LVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999888888887777654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 880 | |||
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 9e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-08 |
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 58.3 bits (139), Expect = 9e-09
Identities = 57/449 (12%), Positives = 119/449 (26%), Gaps = 34/449 (7%)
Query: 146 HPEKRWRSEAEAIRVLVDRLSE---REMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGD 202
H K +A V R ++ ++ + + R+ + + F G+ L + L
Sbjct: 7 HHRKVQMGAKDATPVPCGRWAKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQV 66
Query: 203 KGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYP 262
+ + + +LL + L
Sbjct: 67 EPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQA-QLSG 125
Query: 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLN 322
+ L L+ + KR L +YNAV+
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR------------KLLTLDMYNAVML 173
Query: 323 ACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYD-LVHEFFRKMAKSGEA 381
+K + +V ++ +GL P +Y A++ M + + + +M++ G
Sbjct: 174 GWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLK 233
Query: 382 IGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGV----VGTASVYYELACCLCNNGRWQD 437
+ AL VL+ + V T+ + ++ +
Sbjct: 234 LQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKL 293
Query: 438 AMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLK 497
+ + +E+ ++S H + T+ +
Sbjct: 294 HLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKE-------VKHARKTLKTLRDQWE 346
Query: 498 VYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFE 557
+ L E S Y FL L E + A Q E F
Sbjct: 347 KALCRALRETKNRLEREVYEGRFSLYPFLCL----LDEREVVRMLLQVLQALPAQGESFT 402
Query: 558 YVYK--GMALSGCQLDQTKHAWLLVEASR 584
+ + + Q + V+A +
Sbjct: 403 TLARELSARTFSRHVVQRQRVSGQVQALQ 431
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 8e-08
Identities = 75/508 (14%), Positives = 163/508 (32%), Gaps = 159/508 (31%)
Query: 28 IQKHN--RKQAKIQSQA---QLSPSQ-----------QQALAEE---QHFQTLKREFKMF 68
K+N R Q ++ + +L P++ + +A + + K +FK+F
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 69 RRAVAAKSGDPLVGKPWERIERLK--FRQLASE--SKEFAGDNLK------RENLRELKE 118
+ + P +E L+ Q+ S+ N+K + LR L
Sbjct: 186 WLNLKNCN------SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-- 237
Query: 119 MFEKDLNWVLD--DDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLV--------DRLSER 168
+ K L +V + + W + + ++L+ D LS
Sbjct: 238 LKSKPYENCLLVLLNV------------QNAKA-WNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 169 EMTAKNWKFVRIMNQSGLMFTEGQMLKLL-KGLGDKGSW--RQAMSVLDWVYGL--KDKR 223
T ++ + T ++ LL K L + R+ ++ + + R
Sbjct: 285 TTT------HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 224 DLKSRFVYT------KLLAILG---KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTL 274
D + + KL I+ P E ++F + +++P S +
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF----DRLSVFPP-----SAHIPT 389
Query: 275 GQVGLL-------------KELVK--LIERMRQKPSKRI--------------KNMHRK- 304
+ L+ +L K L+E+ ++ + I +HR
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 305 -----------NWDPVLEP-DLVVYNAV---LNACVPSHQW---KGVF----WVFKQLRK 342
+ D + D Y+ + L + + VF ++ +++R
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 343 SGLKPSAATYGLAMEVMLQSGKYDLVHEFFRK-MAKSGEAIGALTYKVLVRA---FWEEG 398
+A+ L LQ L +F++ + + Y+ LV A F +
Sbjct: 510 DSTAWNASGSILN---TLQ----QL--KFYKPYICDNDP-----KYERLVNAILDFLPKI 555
Query: 399 KINEAVAAVRNMEQRGVVGTASVYYELA 426
+ N + ++ + ++ +E A
Sbjct: 556 EENLICSKYTDLLRIALMAEDEAIFEEA 583
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 880 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.48 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.11 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.07 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.05 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.96 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.84 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.8 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.79 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.78 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.68 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.83 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.63 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.63 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.45 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.02 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.75 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.73 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 96.65 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.45 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.43 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 95.79 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 95.38 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 95.14 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 94.8 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 94.14 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 94.11 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 94.08 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 93.68 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 93.3 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 92.07 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 80.43 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.6e-17 Score=144.09 Aligned_cols=358 Identities=12% Similarity=0.072 Sum_probs=135.6
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 97279999999999999827489999999999999999997499789999999978829999899999999999982599
Q 002795 200 LGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGL 279 (880)
Q Consensus 200 ~~~~g~~~~A~~i~~~~~~~~~~~~~~d~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~ 279 (880)
+-+.|++++|...++.+++..| .+..++..+..++.+.|++++|...|+...+. .+-+..+|..+...+...|+
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQEP----DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHCCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCC
T ss_conf 9986999999999999998689----98999999999999869999999999999985--99989999999999642000
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999999999808862476432103799878999999999999960899789999999999889999999999999999
Q 002795 280 LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVM 359 (880)
Q Consensus 280 ~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~ll~~~ 359 (880)
+++|...+...... .+.+...+...............+............. ............
T Consensus 83 ~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 145 (388)
T d1w3ba_ 83 LQEAIEHYRHALRL----------------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLL 145 (388)
T ss_dssp HHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCC----------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
T ss_conf 22222222212112----------------2222222222222222222222222221112222222-222222222222
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 98199589999999999819985188999999999962999999999999998799999999999999998289978999
Q 002795 360 LQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAM 439 (880)
Q Consensus 360 ~~~g~~~~A~~i~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~ 439 (880)
...+....+...+....... +.+...+..+...+...|..+.|...++.....++. +...+..+...+...|++++|.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~ 223 (388)
T d1w3ba_ 146 KALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAV 223 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCCHHHHH
T ss_conf 11000135678888740258-610689986363010247199999999999984946-4999999715522005299999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99999996189998899999999999917998999999999763899999999999999986599989999999998738
Q 002795 440 LVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 519 (880)
Q Consensus 440 ~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~i~~~m~~~~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~g 519 (880)
..+...... .......+..+...+.+.|+++.|...|+...+..+.+..+|..+...+...|++++|...+.......
T Consensus 224 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 301 (388)
T d1w3ba_ 224 AAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301 (388)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 999985777--554799999999999987899999999999998499989999999999997487999999998654048
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9996455799999899999999999999981999899999999998799989-999999999999829999999999999
Q 002795 520 SSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSL 598 (880)
Q Consensus 520 ~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g~~pd-~~~~~~ll~~~~~~G~~~~A~~~~~~m 598 (880)
..+...+..+...+...|++++|...+++..+ +.|+ ...+..+...|...|++++|...|++.
T Consensus 302 --------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 365 (388)
T d1w3ba_ 302 --------------PTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp --------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred --------------CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf --------------73001015799999987899999999999998--68898999999999999859999999999999
Q ss_pred HH
Q ss_conf 98
Q 002795 599 LE 600 (880)
Q Consensus 599 ~~ 600 (880)
.+
T Consensus 366 l~ 367 (388)
T d1w3ba_ 366 IR 367 (388)
T ss_dssp HT
T ss_pred HH
T ss_conf 97
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=8.5e-17 Score=138.71 Aligned_cols=380 Identities=13% Similarity=0.040 Sum_probs=216.0
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99998079959999999999879997799999999999972799999999999998274899999999999999999974
Q 002795 162 VDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKA 241 (880)
Q Consensus 162 i~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~i~~~~~~~~~~~~~~d~~~~~~Li~~~~~~ 241 (880)
...+-+.|++++|...++.+.+.. |-+...+..+...+...|++++|...++.+++..| .+..+|..+..++.+.
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP----LLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHH
T ss_conf 999998699999999999999868-99899999999999986999999999999998599----9899999999996420
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 99789999999978829999899999999999982599999999999998088624764321037998789999999999
Q 002795 242 GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL 321 (880)
Q Consensus 242 g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll 321 (880)
|++++|+..+...... .+.+...+..........+....+.......... ............
T Consensus 81 g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~ 142 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY----------------NPDLYCVRSDLG 142 (388)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH----------------CTTCTHHHHHHH
T ss_pred CCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------------CCCCCCCCCCCC
T ss_conf 0022222222212112--2222222222222222222222222221112222----------------222222222222
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99960899789999999999889999999999999999981995899999999998199851889999999999629999
Q 002795 322 NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKIN 401 (880)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~i~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~ 401 (880)
......+....+...+....... +-+...+..+...+...++++.|...+....+.. +.+...+..+...+...|+++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~ 220 (388)
T d1w3ba_ 143 NLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCHH
T ss_conf 22211000135678888740258-6106899863630102471999999999999849-464999999715522005299
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999999999879999999999999999828997899999999996189998-899999999999917998999999999
Q 002795 402 EAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP-LEITFTGLIISSMDGGHIDDCISIFQH 480 (880)
Q Consensus 402 ~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~i~~~ 480 (880)
+|...++.....+.. ....+..+...+...|++++|...|++... ..| +...+..+...+...|+.++|...++.
T Consensus 221 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 296 (388)
T d1w3ba_ 221 RAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999985777554-799999999999987899999999999998---4999899999999999974879999999986
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 7638999999999999999865999899999999987389996455799999899-999999999999981999899999
Q 002795 481 MKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYV 559 (880)
Q Consensus 481 m~~~~~p~~~t~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~~l 559 (880)
.....+.+...+..+...+...|++++|+..|++..+. .| +..++..+..++...|++++|...
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---------------~p~~~~~~~~la~~~~~~g~~~~A~~~ 361 (388)
T d1w3ba_ 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV---------------FPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS---------------CTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 54048730010157999999878999999999999986---------------889899999999999985999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHHCCC
Q ss_conf 999998799989-9999999999998299
Q 002795 560 YKGMALSGCQLD-QTKHAWLLVEASRAGK 587 (880)
Q Consensus 560 ~~~m~~~g~~pd-~~~~~~ll~~~~~~G~ 587 (880)
+++..+ +.|+ ...+..+...|.+.|+
T Consensus 362 ~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 362 YKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHH--HCCCCHHHHHHHHHHHHHCCC
T ss_conf 999997--099989999999999998589
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=7.1e-10 Score=86.68 Aligned_cols=23 Identities=9% Similarity=0.078 Sum_probs=7.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999825999999999999
Q 002795 267 YHSVAVTLGQVGLLKELVKLIER 289 (880)
Q Consensus 267 ~~~ll~~~~~~g~~~~A~~l~~~ 289 (880)
|..+..++...|++++|...|.+
T Consensus 56 ~~~lg~~~~~~~~~~~A~~~~~~ 78 (323)
T d1fcha_ 56 WQYLGTTQAENEQELLAISALRR 78 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999983775889999985
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.5e-09 Score=84.18 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999999999997499789999999978
Q 002795 229 FVYTKLLAILGKAGRPHEALRIFNLML 255 (880)
Q Consensus 229 ~~~~~Li~~~~~~g~~~~A~~lf~~m~ 255 (880)
.+|..+..++...|++++|...|.+..
T Consensus 54 ~a~~~lg~~~~~~~~~~~A~~~~~~al 80 (323)
T d1fcha_ 54 EAWQYLGTTQAENEQELLAISALRRCL 80 (323)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999998377588999998510
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=5.5e-07 Score=65.00 Aligned_cols=215 Identities=8% Similarity=0.048 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 99999999999807995999999999987999779999999999997279-99999999999982748999999999999
Q 002795 155 AEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKG-SWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233 (880)
Q Consensus 155 ~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~i~~~~~~~~~~~~~~d~~~~~~ 233 (880)
.+++..+...+.+.+.+++|+.+++.+.+.. |-+...|+.....+...+ ++++|...++.+++..+ .+..+|+.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p----~~~~a~~~ 117 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP----KNYQVWHH 117 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT----TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_conf 9999999999995886699999999999879-887699999999999837679999999999998877----42268988
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 99999974997899999999788299998999999999999825999999999999980886247643210379987899
Q 002795 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313 (880)
Q Consensus 234 Li~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd 313 (880)
+...+.+.|++++|+..|+.+.+. .+.+...|..+...+...|++++|...+..+.+. .+.+
T Consensus 118 ~~~~~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~----------------~p~n 179 (315)
T d2h6fa1 118 RRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE----------------DVRN 179 (315)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH----------------CTTC
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------CCCC
T ss_conf 758888505378899887555432--1004688998877888888667899999999987----------------9744
Q ss_pred HHHHHHHHHHHHCCCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CCHHH
Q ss_conf 9999999999960899------7899999999998899999999999999999819958999999999981998-51889
Q 002795 314 LVVYNAVLNACVPSHQ------WKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEA-IGALT 386 (880)
Q Consensus 314 ~~ty~~ll~~~~~~g~------~~~A~~l~~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~i~~~m~~~g~~-~d~~~ 386 (880)
...|+.+...+.+.+. +++|+..+....... +.+...+..+...+. .....++...+....+.... .+...
T Consensus 180 ~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~ 257 (315)
T d2h6fa1 180 NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYL 257 (315)
T ss_dssp HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 9999889999987456310235477679999999849-885699999877988-62718899999999972877578999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 002795 387 YKVLVRAF 394 (880)
Q Consensus 387 ~~~Li~~~ 394 (880)
+..+...|
T Consensus 258 ~~~l~~~y 265 (315)
T d2h6fa1 258 IAFLVDIY 265 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.07 E-value=9.7e-07 Score=63.16 Aligned_cols=236 Identities=11% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCH--------------HHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 999999999998274899999999999999999974997--------------899999999788299998999999999
Q 002795 206 WRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRP--------------HEALRIFNLMLEDCNLYPDIAAYHSVA 271 (880)
Q Consensus 206 ~~~A~~i~~~~~~~~~~~~~~d~~~~~~Li~~~~~~g~~--------------~~A~~lf~~m~~~~g~~pd~~t~~~ll 271 (880)
.+.+..+|++++...+ .+..+|...+..+...++. ++|..+|++.... ..+.+...|...+
T Consensus 32 ~~Rv~~vyerAl~~~~----~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~-~~p~~~~l~~~ya 106 (308)
T d2onda1 32 TKRVMFAYEQCLLVLG----HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYA 106 (308)
T ss_dssp HHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH-CCCCCHHHHHHHH
T ss_conf 9999999999998777----9999999999999870736887778763102459999999999987-4998799999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 99982599999999999998088624764321037998789999999999999608997899999999998899999999
Q 002795 272 VTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAAT 351 (880)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 351 (880)
......|+++.|..+|+.+.... .......|...+..+.+.++.+.|..+|..+.+.+.......
T Consensus 107 ~~~~~~~~~~~a~~i~~~~l~~~---------------~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~ 171 (308)
T d2onda1 107 DYEESRMKYEKVHSIYNRLLAIE---------------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 171 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSS---------------SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHH---------------CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99986133899999999999871---------------578699999999999982786889999999998088867999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHH
Q ss_conf 999999999819958999999999981998518899999999996299999999999999879999---99999999999
Q 002795 352 YGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVG---TASVYYELACC 428 (880)
Q Consensus 352 y~~ll~~~~~~g~~~~A~~i~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~Li~~ 428 (880)
......-+...|+.+.|..+|+.+.+.. +.+...|...+..+...|+++.|..+|++.......+ ....|...+..
T Consensus 172 ~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~f 250 (308)
T d2onda1 172 VTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250 (308)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999999876557789999999999861-003889999999999869868999999999982789868999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 9828997899999999996189998899999999
Q 002795 429 LCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLI 462 (880)
Q Consensus 429 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll 462 (880)
-...|+.+.+..+++++.+.....+.......++
T Consensus 251 E~~~G~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 284 (308)
T d2onda1 251 ESNIGDLASILKVEKRRFTAFREEYEGKETALLV 284 (308)
T ss_dssp HHHHSCHHHHHHHHHHHHHHTTTTTSSCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 9984999999999999998771102201489999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=1.2e-06 Score=62.45 Aligned_cols=64 Identities=6% Similarity=-0.037 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99999999999608997899999999998899999999999999999819958999999999981
Q 002795 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKS 378 (880)
Q Consensus 314 ~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~i~~~m~~~ 378 (880)
..+|+.+...+.+.|++++|+..+..+.+.. +-+...|..+..++...++++.|...++.+++.
T Consensus 112 ~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 112 YQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 175 (315)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2689887588885053788998875554321-004688998877888888667899999999987
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=2.5e-06 Score=60.08 Aligned_cols=11 Identities=18% Similarity=0.271 Sum_probs=3.4
Q ss_pred HCCCHHHHHHH
Q ss_conf 74997899999
Q 002795 240 KAGRPHEALRI 250 (880)
Q Consensus 240 ~~g~~~~A~~l 250 (880)
..|++++|...
T Consensus 63 ~~g~~~~A~~~ 73 (366)
T d1hz4a_ 63 CKGELTRSLAL 73 (366)
T ss_dssp HHTCHHHHHHH
T ss_pred HCCCHHHHHHH
T ss_conf 87999999999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=6.3e-06 Score=57.02 Aligned_cols=53 Identities=30% Similarity=0.401 Sum_probs=19.4
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999749978999999997882999989-----9999999999982599999999999998
Q 002795 237 ILGKAGRPHEALRIFNLMLEDCNLYPD-----IAAYHSVAVTLGQVGLLKELVKLIERMR 291 (880)
Q Consensus 237 ~~~~~g~~~~A~~lf~~m~~~~g~~pd-----~~t~~~ll~~~~~~g~~~~A~~l~~~m~ 291 (880)
.+...|++++|+.++++.... .+.+ ...+..+...+...|++++|...|....
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 78 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 78 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999888999999999999854--8689967999999999999998799999999999999
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=6.4e-06 Score=56.98 Aligned_cols=89 Identities=17% Similarity=-0.028 Sum_probs=31.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99997279999999999999827489999999999999999997499789999999978829999899999999999982
Q 002795 197 LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (880)
Q Consensus 197 i~~~~~~g~~~~A~~i~~~~~~~~~~~~~~d~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~ 276 (880)
...+.+.|+++.|...|+..+...| .+..+|+.+..++.+.|++++|+..|++..+. .+-+..++..+...+..
T Consensus 44 G~~y~~~g~~~~A~~~~~~al~l~p----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 44 GVLYDSLGLRALARNDFSQALAIRP----DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHCCCC----CCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_conf 9999987999999999998543499----98899960042788877788752344689998--76111158889999998
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 599999999999998
Q 002795 277 VGLLKELVKLIERMR 291 (880)
Q Consensus 277 ~g~~~~A~~l~~~m~ 291 (880)
.|++++|...|+...
T Consensus 118 ~g~~~~A~~~~~~al 132 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFY 132 (259)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 766799999999998
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.79 E-value=3.3e-07 Score=66.68 Aligned_cols=28 Identities=7% Similarity=0.013 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999999865999899999999987
Q 002795 490 GTVNAMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 490 ~t~~~Li~~~~~~g~~~~A~~l~~~m~~ 517 (880)
..|..+...|...|+.++|...|+...+
T Consensus 277 ~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 277 LTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999878999999999999998
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=3.7e-06 Score=58.77 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=9.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999865999899999999987
Q 002795 494 AMLKVYSRNDMFSKAKELFEETTR 517 (880)
Q Consensus 494 ~Li~~~~~~g~~~~A~~l~~~m~~ 517 (880)
.+...|...|++++|...|+....
T Consensus 214 ~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 214 YLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999987899999999999998
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.68 E-value=1.8e-07 Score=68.61 Aligned_cols=213 Identities=9% Similarity=-0.055 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCCCCCHHHHHH-HHHHHHHCCCHHH
Q ss_conf 99999999999827489999999999999999997499--78999999997882999989999999-9999982599999
Q 002795 206 WRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGR--PHEALRIFNLMLEDCNLYPDIAAYHS-VAVTLGQVGLLKE 282 (880)
Q Consensus 206 ~~~A~~i~~~~~~~~~~~~~~d~~~~~~Li~~~~~~g~--~~~A~~lf~~m~~~~g~~pd~~t~~~-ll~~~~~~g~~~~ 282 (880)
+.+|+.+++.+++..+ .+...|..+..++...+. .++|...+..+... .+++...+.. ....+...+..++
T Consensus 89 ~~~al~~~~~~l~~~p----k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 89 VKAELGFLESCLRVNP----KSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 9999999999998688----8679898864899884304289999999999855--921211110578999874455289
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999999808862476432103799878999999999999960899789999999999889999999999999999981
Q 002795 283 LVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQS 362 (880)
Q Consensus 283 A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~ll~~~~~~ 362 (880)
|+..++..... .+-+...|+.+...+...|++++|...+...... .|. .......+...
T Consensus 163 Al~~~~~~i~~----------------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l 221 (334)
T d1dcea1 163 ELAFTDSLITR----------------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFT 221 (334)
T ss_dssp HHHHHHTTTTT----------------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHC----------------CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--HHH---HHHHHHHHHHH
T ss_conf 99999998871----------------8987999999999999826889899988776776--899---99999999882
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99589999999999819985188999999999962999999999999998799999999999999998289978999999
Q 002795 363 GKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVV 442 (880)
Q Consensus 363 g~~~~A~~i~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~l~ 442 (880)
+..+.+...+....... +.+...+..+...+...++..+|...+.+....++. +...+..+..++...|+.++|...+
T Consensus 222 ~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~ 299 (334)
T d1dcea1 222 DPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYF 299 (334)
T ss_dssp CSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 44148899999887718-660567887999999986699999999988762913-7999999999998789999999999
Q ss_pred HHHHH
Q ss_conf 99996
Q 002795 443 EKIKS 447 (880)
Q Consensus 443 ~~m~~ 447 (880)
+....
T Consensus 300 ~~ai~ 304 (334)
T d1dcea1 300 STLKA 304 (334)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99998
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.83 E-value=0.001 Score=40.36 Aligned_cols=214 Identities=17% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-----
Q ss_conf 999999999999819958999999999981-----9985188999999999962999999999999998799999-----
Q 002795 349 AATYGLAMEVMLQSGKYDLVHEFFRKMAKS-----GEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT----- 418 (880)
Q Consensus 349 ~~ty~~ll~~~~~~g~~~~A~~i~~~m~~~-----g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~----- 418 (880)
...|......|...+++++|...|.+..+. +...-..+|..+..+|.+.|++++|...++..........
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 116 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999999988699999999999999998759988999999999999998088588899999766776532532058
Q ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHCCCCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH----
Q ss_conf 99999999999828-99789999999999618999889----9999999999917998999999999763899999----
Q 002795 419 ASVYYELACCLCNN-GRWQDAMLVVEKIKSLRHSKPLE----ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI---- 489 (880)
Q Consensus 419 ~~t~~~Li~~~~~~-g~~~~A~~l~~~m~~~~~~~p~~----~t~~~ll~~~~~~g~~~~A~~i~~~m~~~~~p~~---- 489 (880)
..++..+...|... |+++.|+..+.+.........+. .++..+...+...|+++.|...|+......+.+.
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~ 196 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999988867647878999988999999998733760333468899999999817399999999999986813324555
Q ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CHHHHHHHHHHHHH--CCCHHHHHH
Q ss_conf ---9999999999865999899999999987389996455799999899------99999999999998--199989999
Q 002795 490 ---GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP------DEYTYSSMLEASAT--AHQWEYFEY 558 (880)
Q Consensus 490 ---~t~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~l~~~~~~~~P------d~~t~~~ll~a~~~--~~~~~~A~~ 558 (880)
..+..++..+...|++..|...+++... +.| .......++.++.. .+.+.++..
T Consensus 197 ~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~---------------~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~ 261 (290)
T d1qqea_ 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQS---------------EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCK 261 (290)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---------------C---------HHHHHHHHHHHHTTCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 6999999999999984659999999999997---------------5977444399999999999998368999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999987999899999999999
Q 002795 559 VYKGMALSGCQLDQTKHAWLLVE 581 (880)
Q Consensus 559 l~~~m~~~g~~pd~~~~~~ll~~ 581 (880)
.|..+ ...|+.....|...
T Consensus 262 ~y~~~----~~lD~~~~~~L~~~ 280 (290)
T d1qqea_ 262 EFDNF----MRLDKWKITILNKI 280 (290)
T ss_dssp HHTTS----SCCCHHHHHHHHHH
T ss_pred HHHHH----HHCCHHHHHHHHHH
T ss_conf 99887----54689999999999
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.002 Score=38.28 Aligned_cols=152 Identities=11% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 99999999999825999999999999980886247643210379987899999999999996089978999999999988
Q 002795 264 IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (880)
Q Consensus 264 ~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~ 343 (880)
...|+. ...+...|+++.|++.|..+ .+|+...|..+..+|...|++++|+..|++..+.
T Consensus 6 ~~l~~~-g~~~~~~~d~~~Al~~~~~i-------------------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l 65 (192)
T d1hh8a_ 6 ISLWNE-GVLAADKKDWKGALDAFSAV-------------------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR 65 (192)
T ss_dssp HHHHHH-HHHHHHTTCHHHHHHHHHTS-------------------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHCCCHHHHHHHHHHC-------------------CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 999999-99999877999999999864-------------------8988999999999999858914678789999998
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999999999999819958999999999981998518---------------899999999996299999999999
Q 002795 344 GLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGA---------------LTYKVLVRAFWEEGKINEAVAAVR 408 (880)
Q Consensus 344 g~~pd~~ty~~ll~~~~~~g~~~~A~~i~~~m~~~g~~~d~---------------~~~~~Li~~~~~~g~~~~A~~~~~ 408 (880)
. +-....|..+..++.+.|++++|...|++.......... .++..+..++.+.|++++|.+.|.
T Consensus 66 d-p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~ 144 (192)
T d1hh8a_ 66 D-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 144 (192)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 5-523466788999998542499999999999986726736789986654363058899999999999789999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 9998799999999999999998289978
Q 002795 409 NMEQRGVVGTASVYYELACCLCNNGRWQ 436 (880)
Q Consensus 409 ~m~~~g~~p~~~t~~~Li~~~~~~g~~~ 436 (880)
......+.+........+..+.+....+
T Consensus 145 ~A~~~~~~~~~~~~~~Al~~~~~~~~~~ 172 (192)
T d1hh8a_ 145 LATSMKSEPRHSKIDKAMECVWKQKLYE 172 (192)
T ss_dssp HHHTTCCSGGGGHHHHHHHHHHTTCCCC
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9983699804079999999998361088
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.63 E-value=0.002 Score=38.25 Aligned_cols=100 Identities=7% Similarity=-0.111 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999999999974997899999999788299998999999999999825999999999999980886247643210
Q 002795 225 LKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRK 304 (880)
Q Consensus 225 ~~d~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~ 304 (880)
.|+...+......+.+.|++++|+..|.+.... .+.+...|..+..+|.+.|++++|...|......
T Consensus 1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l----------- 67 (201)
T d2c2la1 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL----------- 67 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----------
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_conf 964999999999999869999999999999985--9998999981789874100000124788888871-----------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 37998789999999999999608997899999999998
Q 002795 305 NWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (880)
Q Consensus 305 ~f~~~~~pd~~ty~~ll~~~~~~g~~~~A~~l~~~m~~ 342 (880)
.+-+..+|..+..+|...|++++|+..|++...
T Consensus 68 -----~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 68 -----DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf -----887389999999999987999999999999987
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.0034 Score=36.53 Aligned_cols=130 Identities=12% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999999999981995899999999998199851889999999999629999999999999987999999999999999
Q 002795 349 AATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACC 428 (880)
Q Consensus 349 ~~ty~~ll~~~~~~g~~~~A~~i~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~ 428 (880)
...+......+.+.|+++.|...|.+.++.. +.+...|..+...|...|++++|...|+...+.++. +...|..+..+
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~ 87 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_conf 9999999999999589999999866021100-011333245678887405421288889999987544-66877999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9828997899999999996189998899999999999917998999999999
Q 002795 429 LCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQH 480 (880)
Q Consensus 429 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~i~~~ 480 (880)
+...|++++|...+++........+........+......+..+.+......
T Consensus 88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~ 139 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 139 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 9994999999998999987299979999999999999998989999757388
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.0089 Score=33.36 Aligned_cols=115 Identities=11% Similarity=-0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 99999999999807995999999999987999779999999999997279999999999999827489999999999999
Q 002795 155 AEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL 234 (880)
Q Consensus 155 ~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~i~~~~~~~~~~~~~~d~~~~~~L 234 (880)
+..+..-...+...|++++|+.+|....+.. +.+...|..+...+...|++..|...+..+++..+ .+...|..+
T Consensus 3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~ 77 (117)
T d1elwa_ 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP----DWGKGYSRK 77 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----TCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCC----CHHHHHHHH
T ss_conf 9999999999999699999999999988619-96013430001101100001121001346777402----202677889
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 999997499789999999978829999899999999999982
Q 002795 235 LAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (880)
Q Consensus 235 i~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~ 276 (880)
..++...|++++|+..|+...+ -.+-+...+..+-..-.+
T Consensus 78 g~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~l~~r 117 (117)
T d1elwa_ 78 AAALEFLNRFEEAKRTYEEGLK--HEANNPQLKEGLQNMEAR 117 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHCC
T ss_conf 9999981279999999999998--498989999999978384
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.75 E-value=0.0083 Score=33.62 Aligned_cols=212 Identities=7% Similarity=-0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 599999999998799977999999999999727--999999999999982748999999999999999999749978999
Q 002795 171 TAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDK--GSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEAL 248 (880)
Q Consensus 171 ~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~i~~~~~~~~~~~~~~d~~~~~~Li~~~~~~g~~~~A~ 248 (880)
+..+...++...+....++.......+..+... +.++.|...+....+..+ .+...+..+...+.+.|+.+.|.
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~----~~~~~~~~lg~~~~~~~~~~~A~ 140 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL----PCRVKSSQLGIISNKQTHTSAIV 140 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99999999985616458437999999999999999999999999999878991----13999998579987589999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99999788299998999999999999825999999999999980886247643210379987899999999999996089
Q 002795 249 RIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSH 328 (880)
Q Consensus 249 ~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g 328 (880)
..+...... ....++..+...+...+++++|...|.+.... .+.+...|+.+...+...|
T Consensus 141 ~~~~~al~~----~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l----------------~P~~~~~~~~Lg~~~~~~~ 200 (497)
T d1ya0a1 141 KPQSSSCSY----ICQHCLVHLGDIARYRNQTSQAESYYRHAAQL----------------VPSNGQPYNQLAILASSKG 200 (497)
T ss_dssp --CCHHHHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTBSHHHHHHHHHHHHTT
T ss_pred HHHHHHHCC----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHCC
T ss_conf 999988278----89999999999999802478999999999987----------------8996599999999999869
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 97899999999998899999999999999999819958999999999981998518899999999996299999999999
Q 002795 329 QWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQSGKYDLVHEFFRKMAKSGEAIGALTYKVLVRAFWEEGKINEAVAAVR 408 (880)
Q Consensus 329 ~~~~A~~l~~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~i~~~m~~~g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~ 408 (880)
+..+|...|.+..... .|-..++..+...+.+......+.......... ...+..+...+.....++....+.+
T Consensus 201 ~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~~~~~~~~~~~~~~~~-----~~~f~~~~~~l~~~~~~~~~~~~~~ 274 (497)
T d1ya0a1 201 DHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKALESRDEVKTKWGVSDF-----IKAFIKFHGHVYLSKSLEKLSPLRE 274 (497)
T ss_dssp CHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHTTSCCCCCSSCCHHHH-----HHHHHHHHHHHHHTCCGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH-----HHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999999998179-997899999999998753015441234444258-----9999999999971886665899999
Q ss_pred HHHH
Q ss_conf 9998
Q 002795 409 NMEQ 412 (880)
Q Consensus 409 ~m~~ 412 (880)
.+..
T Consensus 275 ~~~~ 278 (497)
T d1ya0a1 275 KLEE 278 (497)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=96.73 E-value=0.015 Score=31.74 Aligned_cols=93 Identities=14% Similarity=-0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999807995999999999987999779999999999997279999999999999827489999999999999999
Q 002795 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI 237 (880)
Q Consensus 158 ~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~i~~~~~~~~~~~~~~d~~~~~~Li~~ 237 (880)
+-.+...+.+.|++.+|...|+...... +-+...+..+...+...|++++|...++.++...| .+..+|..+...
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p----~~~~a~~~la~~ 93 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP----KDIAVHAALAVS 93 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC----CCCCCHHHHHHH
T ss_conf 9999999998760589999886101121-11100123354564101258774100000111111----000003789999
Q ss_pred HHHCCCHHHHHHHHHHHH
Q ss_conf 997499789999999978
Q 002795 238 LGKAGRPHEALRIFNLML 255 (880)
Q Consensus 238 ~~~~g~~~~A~~lf~~m~ 255 (880)
|...|+.++|++.|++..
T Consensus 94 y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 94 HTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
T ss_conf 999789999999999981
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.0093 Score=33.24 Aligned_cols=113 Identities=11% Similarity=-0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 999999997279999999999999827489999999999999999997499789---99999997882999989999999
Q 002795 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHE---ALRIFNLMLEDCNLYPDIAAYHS 269 (880)
Q Consensus 193 ~~~li~~~~~~g~~~~A~~i~~~~~~~~~~~~~~d~~~~~~Li~~~~~~g~~~~---A~~lf~~m~~~~g~~pd~~t~~~ 269 (880)
...++..+...+++++|.+.|+..+...+ .+..++..+..++.+.++... |+.+|+++......+....+|..
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p----~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~ 77 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGS----VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY 77 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC----CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 77798873699999999999999883299----98999999999999851267899999999999860699319999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 999998259999999999999808862476432103799878999999999999960
Q 002795 270 VAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP 326 (880)
Q Consensus 270 ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~ 326 (880)
+..+|.+.|++++|...|+.+.+ ..|+..-...+......
T Consensus 78 Lg~~y~~~g~~~~A~~~~~~aL~-----------------~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 78 LAVGNYRLKEYEKALKYVRGLLQ-----------------TEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-----------------HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HCCCCHHHHHHHHHHHH
T ss_conf 99999997316999999999997-----------------69098999999999999
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.45 E-value=0.0086 Score=33.49 Aligned_cols=49 Identities=6% Similarity=-0.044 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99989999999999879998999999999999982999999999999998
Q 002795 551 HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLE 600 (880)
Q Consensus 551 ~~~~~A~~l~~~m~~~g~~pd~~~~~~ll~~~~~~G~~~~A~~~~~~m~~ 600 (880)
|++++|...+++.++.. +-+...+..+...|+..|++++|...|+...+
T Consensus 10 G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 10 GQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 89999999999999978-99999999999999987999999999999998
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.43 E-value=0.009 Score=33.34 Aligned_cols=51 Identities=22% Similarity=0.189 Sum_probs=32.3
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 865999899999999987389996455799999899-999999999999981999899999999998
Q 002795 500 SRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMAL 565 (880)
Q Consensus 500 ~~~g~~~~A~~l~~~m~~~g~~~~~~l~~~~~~~~P-d~~t~~~ll~a~~~~~~~~~A~~l~~~m~~ 565 (880)
.+.|++++|+..+++..+.. | |...+..+...++..|++++|...++...+
T Consensus 7 L~~G~l~eAl~~l~~al~~~---------------P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS---------------PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC---------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 88889999999999999978---------------99999999999999987999999999999998
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.79 E-value=0.044 Score=28.19 Aligned_cols=27 Identities=7% Similarity=0.175 Sum_probs=9.2
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 999999999999608997899999999
Q 002795 313 DLVVYNAVLNACVPSHQWKGVFWVFKQ 339 (880)
Q Consensus 313 d~~ty~~ll~~~~~~g~~~~A~~l~~~ 339 (880)
+...|..++.++...|+..+|+..|++
T Consensus 100 ~e~~~~~l~~al~~~Gr~~eAl~~y~~ 126 (179)
T d2ff4a2 100 REPLWTQLITAYYLSDRQSDALGAYRR 126 (179)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 199999999999985579999999999
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.06 Score=27.15 Aligned_cols=132 Identities=11% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH--------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 889999999999629999999999999987999999--------------999999999982899789999999999618
Q 002795 384 ALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA--------------SVYYELACCLCNNGRWQDAMLVVEKIKSLR 449 (880)
Q Consensus 384 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------~t~~~Li~~~~~~g~~~~A~~l~~~m~~~~ 449 (880)
...+......+.+.|++++|+..|.+.......... .+|+.+..+|.+.|++++|+..++....
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~-- 90 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE-- 90 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH--
T ss_conf 999999999999969999999999999887510100035777640646799999999998864211011000000010--
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHH
Q ss_conf 99988999999999999179989999999997638999999999999999865999899999-999987
Q 002795 450 HSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKEL-FEETTR 517 (880)
Q Consensus 450 ~~~p~~~t~~~ll~~~~~~g~~~~A~~i~~~m~~~~~p~~~t~~~Li~~~~~~g~~~~A~~l-~~~m~~ 517 (880)
..+.+..++..+..++...|+++.|...|+...+..|.+......+-...-+.+...+...- +..|..
T Consensus 91 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~ 159 (170)
T d1p5qa1 91 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 159 (170)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 022310346777999987222999999999999729898999999999999999999999999999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.14 E-value=0.07 Score=26.63 Aligned_cols=115 Identities=10% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHH---HH
Q ss_conf 999999999998079959999999999879997799999999999972799999999999998274899999999---99
Q 002795 155 AEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF---VY 231 (880)
Q Consensus 155 ~~~~~~li~~l~~~~~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~i~~~~~~~~~~~~~~d~~---~~ 231 (880)
...+..+-..+...+++++|+..|....+.. +.+...+..+...|...|+++.|...++.++...+........ +|
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~ 82 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 8999999999998599999999999998849-645899986889998818607789999999986801278898899999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 999999997499789999999978829999899999999999
Q 002795 232 TKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVT 273 (880)
Q Consensus 232 ~~Li~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~ 273 (880)
..+...+...+++++|+..|+..... .++......+-.+
T Consensus 83 ~~lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~~~~l~~~ 121 (128)
T d1elra_ 83 ARIGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQA 121 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHC---CCCHHHHHHHHHH
T ss_conf 99999999938899999999999845---9999999999999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.80 E-value=0.086 Score=25.99 Aligned_cols=125 Identities=10% Similarity=-0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99999999999807995999999999987---------------999779999999999997279999999999999827
Q 002795 155 AEAIRVLVDRLSEREMTAKNWKFVRIMNQ---------------SGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGL 219 (880)
Q Consensus 155 ~~~~~~li~~l~~~~~~~~A~~l~~~m~~---------------~g~~~~~~~~~~li~~~~~~g~~~~A~~i~~~~~~~ 219 (880)
...+......+...+++.+|+..|....+ .--+.....+..+...+.+.|++++|...+..+++.
T Consensus 27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 106 (169)
T d1ihga1 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 106 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999999990889999999999987411116666557787719023999998999998640210136665544310
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 489999999999999999997499789999999978829999899999999999982599999999
Q 002795 220 KDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVK 285 (880)
Q Consensus 220 ~~~~~~~d~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~ 285 (880)
.+ .+..+|..+..++...|++++|+..|+...+. .+.+...+..+..+..+.....+..+
T Consensus 107 ~p----~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l~~~~~~l~~~~~~~k 166 (169)
T d1ihga1 107 DP----SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 166 (169)
T ss_dssp CT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 00----22367776999999804799999999999985--98999999999999999998999998
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.14 E-value=0.12 Score=24.95 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9999999999997279999999999999827489999999999999999997499789999999
Q 002795 189 TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFN 252 (880)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~i~~~~~~~~~~~~~~d~~~~~~Li~~~~~~g~~~~A~~lf~ 252 (880)
+..-...+...|-+.|.++.|..++..+ .+ |..++..+.+.+++..|.+++.
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d---~~rl~~~~v~l~~~~~avd~~~ 64 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN---FGRLASTLVHLGEYQAAVDGAR 64 (336)
T ss_dssp ----------------CTTTHHHHHHHT---------TC---HHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHHHC---------CC---HHHHHHHHHHHCCHHHHHHHHH
T ss_conf 8578999999998787799999999867---------89---9999999970315999999998
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.11 E-value=0.12 Score=24.91 Aligned_cols=117 Identities=14% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH----------HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 98289978999999999961899988999999999999----------17998999999999763899999999999999
Q 002795 429 LCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM----------DGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 498 (880)
Q Consensus 429 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~----------~~g~~~~A~~i~~~m~~~~~p~~~t~~~Li~~ 498 (880)
|-+.+.+++|...|+.... ..+.+...+..+-.++. ..+.+++|+..|+...+-.|.+..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9987369999999999986--18831089999999998762133336778878889999999887301205877668999
Q ss_pred HHHCCC-----------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 986599-----------989999999998738999645579999989999999999999998199989999999999879
Q 002795 499 YSRNDM-----------FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSG 567 (880)
Q Consensus 499 ~~~~g~-----------~~~A~~l~~~m~~~g~~~~~~l~~~~~~~~Pd~~t~~~ll~a~~~~~~~~~A~~l~~~m~~~g 567 (880)
|...|+ +++|...|+.... +.|+...|...+..+ ..+.+++.+..+.|
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~---------------l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD---------------EQPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---------------HCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCC---------------CCCCHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_conf 987010113578898867876312110002---------------598889999999999------99797899999873
Q ss_pred C
Q ss_conf 9
Q 002795 568 C 568 (880)
Q Consensus 568 ~ 568 (880)
+
T Consensus 144 ~ 144 (145)
T d1zu2a1 144 L 144 (145)
T ss_dssp S
T ss_pred C
T ss_conf 5
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=94.08 E-value=0.12 Score=24.87 Aligned_cols=135 Identities=7% Similarity=-0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999999727999999999999982748999999999-----------9999999997499789999999978829
Q 002795 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV-----------YTKLLAILGKAGRPHEALRIFNLMLEDC 258 (880)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~i~~~~~~~~~~~~~~d~~~-----------~~~Li~~~~~~g~~~~A~~lf~~m~~~~ 258 (880)
...+......+.+.|++..|...|...+..-+.....+... |+.+..+|.+.|++++|+..++.....
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l- 93 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 93 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC-
T ss_conf 9999999999999599999999999999999875001245553106467999984999987762201100022322201-
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHH-HHHHH
Q ss_conf 99989999999999998259999999999999808862476432103799878999999999999960899789-99999
Q 002795 259 NLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKG-VFWVF 337 (880)
Q Consensus 259 g~~pd~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~~~f~~~~~pd~~ty~~ll~~~~~~g~~~~-A~~l~ 337 (880)
.+.+..+|..+..++...|++++|...|...... .+.+...+..+-......+...+ ...+|
T Consensus 94 -~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l----------------~P~n~~~~~~l~~~~~~~~~~~e~~kk~~ 156 (168)
T d1kt1a1 94 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV----------------NPQNKAARLQIFMCQKKAKEHNERDRRTY 156 (168)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -3104889998899998827899999999999985----------------98989999999999999986999999999
Q ss_pred HHHHH
Q ss_conf 99998
Q 002795 338 KQLRK 342 (880)
Q Consensus 338 ~~m~~ 342 (880)
..|.+
T Consensus 157 ~~~f~ 161 (168)
T d1kt1a1 157 ANMFK 161 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99986
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=93.68 E-value=0.14 Score=24.35 Aligned_cols=116 Identities=9% Similarity=-0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99999999999608997899999999998899999---------------999999999999819958999999999981
Q 002795 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS---------------AATYGLAMEVMLQSGKYDLVHEFFRKMAKS 378 (880)
Q Consensus 314 ~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd---------------~~ty~~ll~~~~~~g~~~~A~~i~~~m~~~ 378 (880)
...+......+.+.|++.+|+..|.+....-.... ..+|..+..++.+.|+++.|...+...++.
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~ 96 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 96 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf 99999999999995999999999998776073001110577887631078899961999999846530111010001000
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99851889999999999629999999999999987999999999999999982
Q 002795 379 GEAIGALTYKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 431 (880)
Q Consensus 379 g~~~d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~ 431 (880)
. +.+..+|..+..+|...|++++|...|+.....++. +......+-.+..+
T Consensus 97 ~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~k 147 (153)
T d2fbna1 97 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNK 147 (153)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
T ss_conf 0-000124677689999968999999999999982989-89999999999999
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.30 E-value=0.16 Score=23.92 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=7.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999999962999999999999
Q 002795 389 VLVRAFWEEGKINEAVAAVRN 409 (880)
Q Consensus 389 ~Li~~~~~~g~~~~A~~~~~~ 409 (880)
.++..|-..|.++....+++.
T Consensus 104 ~~v~~ye~~~~~e~Li~~Le~ 124 (336)
T d1b89a_ 104 ELINYYQDRGYFEELITMLEA 124 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999876985999999999
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=92.07 E-value=0.23 Score=22.77 Aligned_cols=235 Identities=9% Similarity=-0.041 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 9999999999996089978999999999988999999999999999998----199589999999999819985188999
Q 002795 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMEVMLQ----SGKYDLVHEFFRKMAKSGEAIGALTYK 388 (880)
Q Consensus 313 d~~ty~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~ll~~~~~----~g~~~~A~~i~~~m~~~g~~~d~~~~~ 388 (880)
|...+..+...+.+.+++.+|+..|++..+.| +...+..+-..+.. ..+...+...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC---CCCHHH
T ss_conf 98999999999998779999999999999789---999999999999809996056999987501222111---111231
Q ss_pred HHHHHHHH----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 99999996----29999999999999987999999999999999982----89978999999999961899988999999
Q 002795 389 VLVRAFWE----EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN----NGRWQDAMLVVEKIKSLRHSKPLEITFTG 460 (880)
Q Consensus 389 ~Li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~Li~~~~~----~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ 460 (880)
.+...+.. ..+.+.|...++.....| .......+...+.. ......+...+..... ..+...+..
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~ 147 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTI 147 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC----CCCCCHHHH
T ss_conf 350122432112123677988876554321---4668876343323787331015778887555200----111010445
Q ss_pred HHHHHHH----CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 9999991----7998999999999763899999999999999986----5999899999999987389996455799999
Q 002795 461 LIISSMD----GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR----NDMFSKAKELFEETTRANSSGYTFLSGDGAP 532 (880)
Q Consensus 461 ll~~~~~----~g~~~~A~~i~~~m~~~~~p~~~t~~~Li~~~~~----~g~~~~A~~l~~~m~~~g~~~~~~l~~~~~~ 532 (880)
+...+.. ..+...+...+....+ ..+......+...|.. ..+.++|...|....+.|
T Consensus 148 L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g------------- 212 (265)
T d1ouva_ 148 LGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE------------- 212 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-------------
T ss_pred HHHHHCCCCCCCCCCCCCHHHHHCCCC--CCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCC-------------
T ss_conf 555640688743342200012211323--22223322113121267654310344454676653036-------------
Q ss_pred CCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 89999999999999998----19998999999999987999899999999
Q 002795 533 LKPDEYTYSSMLEASAT----AHQWEYFEYVYKGMALSGCQLDQTKHAWL 578 (880)
Q Consensus 533 ~~Pd~~t~~~ll~a~~~----~~~~~~A~~l~~~m~~~g~~pd~~~~~~l 578 (880)
+...+..|...|.. ..+...|.+.|++....|..+-...+..|
T Consensus 213 ---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~A~~~l~~l 259 (265)
T d1ouva_ 213 ---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQL 259 (265)
T ss_dssp ---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHHTC
T ss_pred ---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf ---89999999999983999761899999999999987699999999999
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=80.43 E-value=0.97 Score=18.08 Aligned_cols=103 Identities=19% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHH--HHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--
Q ss_conf 9999999--9999727999999999999982748999999--------999999999999749978999999997882--
Q 002795 190 EGQMLKL--LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKS--------RFVYTKLLAILGKAGRPHEALRIFNLMLED-- 257 (880)
Q Consensus 190 ~~~~~~l--i~~~~~~g~~~~A~~i~~~~~~~~~~~~~~d--------~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~-- 257 (880)
..+|..+ .......|++++|...|+..+...+..+... ..+|+.+..+|.+.|++++|...+++...-
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 99999999999999859999999999999986844201020012102799999999999982863001576643553043
Q ss_pred --CCCCCCHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf --99998999-----999999999825999999999999980
Q 002795 258 --CNLYPDIA-----AYHSVAVTLGQVGLLKELVKLIERMRQ 292 (880)
Q Consensus 258 --~g~~pd~~-----t~~~ll~~~~~~g~~~~A~~l~~~m~~ 292 (880)
....++.. .+..+..+|...|++++|...|++..+
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 100245544311278775269999988888888999999998
|