Citrus Sinensis ID: 002810
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 877 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZSB5 | 923 | Ubiquitin carboxyl-termin | yes | no | 0.973 | 0.925 | 0.617 | 0.0 | |
| Q93Y01 | 910 | Ubiquitin carboxyl-termin | no | no | 0.972 | 0.937 | 0.619 | 0.0 | |
| Q9MAQ3 | 892 | Putative ubiquitin carbox | no | no | 0.936 | 0.920 | 0.605 | 0.0 | |
| O22207 | 924 | Ubiquitin carboxyl-termin | no | no | 0.960 | 0.911 | 0.483 | 0.0 | |
| Q9C585 | 871 | Ubiquitin carboxyl-termin | no | no | 0.850 | 0.856 | 0.461 | 0.0 | |
| B2GUZ1 | 961 | Ubiquitin carboxyl-termin | yes | no | 0.939 | 0.857 | 0.377 | 1e-148 | |
| P35123 | 962 | Ubiquitin carboxyl-termin | yes | no | 0.936 | 0.853 | 0.375 | 1e-147 | |
| Q13107 | 963 | Ubiquitin carboxyl-termin | yes | no | 0.947 | 0.862 | 0.373 | 1e-144 | |
| Q9R085 | 952 | Ubiquitin carboxyl-termin | no | no | 0.917 | 0.845 | 0.357 | 1e-144 | |
| Q5RCD3 | 963 | Ubiquitin carboxyl-termin | no | no | 0.947 | 0.862 | 0.372 | 1e-143 |
| >sp|Q9ZSB5|UBP10_ARATH Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana GN=UBP10 PE=2 SV=2 | Back alignment and function desciption |
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Score = 1073 bits (2774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/881 (61%), Positives = 678/881 (76%), Gaps = 27/881 (3%)
Query: 1 MTIRDSSVLMMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERY 60
MTI +S M+ENG LP TP+EE++IV +L ++S+ +LK+GNLYF+IS RWY SW+ Y
Sbjct: 1 MTIPNSD-FMLENGVCDLPFTPEEEKRIVSELTSESEDNLKQGNLYFVISKRWYTSWQEY 59
Query: 61 VCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQ 120
V E S + S G SS+ A RPGPIDN DII++ S+ +D ++RR L EG+
Sbjct: 60 V---ENSANECS------TGESSE-APRPGPIDNHDIIES---DSDINDPQLRRLLVEGE 106
Query: 121 DYVLVPQQVWEKLFCWYKGGPALPRKMISEGIVNEK-RVEVFXLCLKLIDSRDNSQTVIR 179
DYVLVP+QVW++L WY GGP + RK+I +G VEV+ LCL L D RD S+TVIR
Sbjct: 107 DYVLVPKQVWKRLVEWYSGGPPIERKLICQGFYTRSYSVEVYPLCLMLTDGRDESRTVIR 166
Query: 180 LSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239
L K+AS R+LYEKVC + G+ QEKA IWDYF+K+++ +S ++L+++ L MDQDIL+
Sbjct: 167 LGKQASIRELYEKVCAMTGVPQEKAHIWDYFDKRKNGLLDPLSYKSLEESSLHMDQDILV 226
Query: 240 EVQ---VDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGS 296
EV + +M STGN+LALVP+EPSRS +TIAGGP LSNGH+T F+ +P
Sbjct: 227 EVDGLSSSSQSAMSSTGNELALVPLEPSRSIVTIAGGPTLSNGHSTTSNFSLFP------ 280
Query: 297 TFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEI 356
DDG DS + KGEKGGLAGL NLGNTCFMNSALQCL HTP + +YFL DYSD+I
Sbjct: 281 RITSEDDGRDSLSILGKGEKGGLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDI 340
Query: 357 NTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLA 416
N +NPLGM GELA+AFGDLL+KLWSSGR AVAPRAFK KLARFAPQFSGYNQHDSQELLA
Sbjct: 341 NRDNPLGMCGELAIAFGDLLKKLWSSGRNAVAPRAFKTKLARFAPQFSGYNQHDSQELLA 400
Query: 417 FLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTL 476
FLLDGLHEDLN+VK+KPYIE+KDS RPD+EVA E W HKARNDS+IVDV QGQYKSTL
Sbjct: 401 FLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYKSTL 460
Query: 477 VCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLI 536
VCPVC K+SITFDPFMYL++PLPST+TR+MT+TVFY +GS LPMP+TV + K G +DLI
Sbjct: 461 VCPVCGKISITFDPFMYLSVPLPSTLTRSMTITVFYCDGSRLPMPYTVIVPKQGSIRDLI 520
Query: 537 LALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGG--KI 594
AL TACCL DE LLLAEVY+H+IFR+FE P + +S+IKDDEHIVAYR ++ G K
Sbjct: 521 TALGTACCLAEDESLLLAEVYDHKIFRYFEIPLDSLSAIKDDEHIVAYRLNQIPKGSRKA 580
Query: 595 KLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSS 654
KLEI++ QE++ D ++GS+ KLFG P VTY+ E LSG DID +S LSPL + ++
Sbjct: 581 KLEILHGGQERAVLDSVRGSDVKLFGTPFVTYVNTEPLSGTDIDAVISGFLSPLHKVHAP 640
Query: 655 AKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKD 714
+K H G +NG L + + ++ S +T E+++ RELSF++ LTDER + KP+Q +
Sbjct: 641 SKIHNGSDNGHLADATVDQASGILSSPDT-EIDNASDRELSFRIFLTDERGLNIKPLQSE 699
Query: 715 SILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLT 774
S + PG +VL++W + HE YD SY+ DLP VHKT F+ KKTRQE+ISLFSCL+AFL
Sbjct: 700 SSISPGTVTRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCLEAFLA 759
Query: 775 EEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPIL 834
EEPLGPDDMW+CP CKEHRQA KKLDLW LPD+LVFHLKRF+YSRYLKNK+DTFVNFP+
Sbjct: 760 EEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVH 819
Query: 835 NLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKV 875
+LDLSKY+K+K+G+SY+Y+L+A+SNHYGGLGGGHYTAYAK+
Sbjct: 820 DLDLSKYVKNKNGQSYLYELYAVSNHYGGLGGGHYTAYAKL 860
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Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2 |
| >sp|Q93Y01|UBP9_ARATH Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana GN=UBP9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9MAQ3|UBP11_ARATH Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana GN=UBP11 PE=3 SV=2 | Back alignment and function description |
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| >sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana GN=UBP8 PE=1 SV=2 | Back alignment and function description |
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| >sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus GN=Usp4 PE=1 SV=1 | Back alignment and function description |
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| >sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q9R085|UBP15_RAT Ubiquitin carboxyl-terminal hydrolase 15 OS=Rattus norvegicus GN=Usp15 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 877 | ||||||
| 359473972 | 1013 | PREDICTED: ubiquitin carboxyl-terminal h | 0.993 | 0.859 | 0.705 | 0.0 | |
| 297742456 | 944 | unnamed protein product [Vitis vinifera] | 0.993 | 0.922 | 0.701 | 0.0 | |
| 255555787 | 938 | Ubiquitin carboxyl-terminal hydrolase, p | 0.992 | 0.927 | 0.675 | 0.0 | |
| 356576624 | 933 | PREDICTED: ubiquitin carboxyl-terminal h | 0.988 | 0.929 | 0.674 | 0.0 | |
| 224117792 | 942 | predicted protein [Populus trichocarpa] | 0.982 | 0.915 | 0.666 | 0.0 | |
| 356576622 | 928 | PREDICTED: ubiquitin carboxyl-terminal h | 0.982 | 0.928 | 0.674 | 0.0 | |
| 224056675 | 933 | predicted protein [Populus trichocarpa] | 0.976 | 0.917 | 0.662 | 0.0 | |
| 449456269 | 915 | PREDICTED: ubiquitin carboxyl-terminal h | 0.988 | 0.947 | 0.673 | 0.0 | |
| 449507201 | 915 | PREDICTED: LOW QUALITY PROTEIN: ubiquiti | 0.988 | 0.947 | 0.673 | 0.0 | |
| 356535266 | 931 | PREDICTED: ubiquitin carboxyl-terminal h | 0.986 | 0.929 | 0.674 | 0.0 |
| >gi|359473972|ref|XP_002279130.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1275 bits (3299), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 631/894 (70%), Positives = 743/894 (83%), Gaps = 23/894 (2%)
Query: 1 MTIRDSSVLMMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERY 60
MTI DS MMENGGSCLP TP++E+QIV DL N+S+ LKEGNLY+++S RW+ SW+RY
Sbjct: 71 MTIADSG-FMMENGGSCLPYTPEQEKQIVDDLMNKSESSLKEGNLYYVVSNRWFTSWQRY 129
Query: 61 VC---GDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLE 117
+ G+ P ++S DS ++ V SK AERPGPIDNSDI+ NGN E DDLE+ R LE
Sbjct: 130 IGQGNGEYPINGHLS-DSQRLDAVPSKTAERPGPIDNSDIVLNGN-ECELDDLEILRTLE 187
Query: 118 EGQDYVLVPQQVWEKLFCWYKGGPALPRKMISEGIVNEK-RVEVFXLCLKLIDSRDNSQT 176
EG+DYVLVPQ+VWEKLF WYKGGPALPRKMIS+GI ++K VE++ LCLKL DSRDNSQ+
Sbjct: 188 EGRDYVLVPQEVWEKLFDWYKGGPALPRKMISQGITHKKFMVEIYRLCLKLTDSRDNSQS 247
Query: 177 VIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQD 236
VIRLSKKAS +LYE+VC L+ +EQEKARIWDYFNK R + L S+QTL+++ LQMDQD
Sbjct: 248 VIRLSKKASVHELYERVCTLKVVEQEKARIWDYFNK-RKQAILVASNQTLEESNLQMDQD 306
Query: 237 ILLEVQVD----NGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGS 292
ILLEVQ+D +G MDSTGN+LALVP+EP RSS++IAGGP LSNG++ + N Y GS
Sbjct: 307 ILLEVQLDGYWPSGFGMDSTGNELALVPMEPPRSSVSIAGGPTLSNGYSKVHTSNLYQGS 366
Query: 293 SFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDY 352
GSTF DM+DGYD + KG++GGLAGLQNLGNTCFMNSA+QCLVHTP + +YFL DY
Sbjct: 367 PLGSTFTDMEDGYDVLRSVAKGDRGGLAGLQNLGNTCFMNSAIQCLVHTPPIFEYFLQDY 426
Query: 353 SDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQ 412
++EIN +NPLGM+GELA AFG+LLRKLWSSGR VAPRAFKGKLARFAPQFSGYNQHDSQ
Sbjct: 427 TEEINKQNPLGMNGELAFAFGELLRKLWSSGRTPVAPRAFKGKLARFAPQFSGYNQHDSQ 486
Query: 413 ELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQY 472
ELLAFLLDGLHEDLNRVKQKPYIE KDS GRPDEEVA+ECW+NHKARNDSLIVDV QGQY
Sbjct: 487 ELLAFLLDGLHEDLNRVKQKPYIETKDSNGRPDEEVADECWRNHKARNDSLIVDVCQGQY 546
Query: 473 KSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCC 532
KSTLVCPVCSK+SITFDPFMYL+LPLPSTVTR MTVTVFY +GSGLPMP+TVT++KHG C
Sbjct: 547 KSTLVCPVCSKISITFDPFMYLSLPLPSTVTRIMTVTVFYGDGSGLPMPYTVTVLKHGYC 606
Query: 533 KDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGG 592
KDL AL+ ACCLK DE LLLAEVY H+I+R+ ENP+EL+++IKD+EHIVAYR +K+ G
Sbjct: 607 KDLSQALAAACCLKSDENLLLAEVYEHRIYRYIENPSELLTNIKDEEHIVAYRLPKKRAG 666
Query: 593 KIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRR-T 651
+LEI++R Q++ D LKG ERKL GAPLVTYL E+ +GADIDIAVS+LLSPLRR T
Sbjct: 667 LTRLEIIHRCQQQCTPDSLKGGERKLLGAPLVTYLGEDAQTGADIDIAVSRLLSPLRRKT 726
Query: 652 Y-SSAKAHGGKENGFLPEVIDELSN-------SHNESVETAELEDLCSRELSFQLSLTDE 703
Y SS+ H GKENG + E D +N S N+S + ELE++ ELSFQLS+TDE
Sbjct: 727 YPSSSNVHSGKENGSVSEATDNPTNSCNTQSGSGNQSTDGTELEEMSRWELSFQLSITDE 786
Query: 704 RISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAI 763
R SCKPI+KDS+++PG+ I+V+LDWTD HELYD SY++DLP VHK GFT KKTR EAI
Sbjct: 787 RGLSCKPIEKDSLIRPGQFIRVMLDWTDKEHELYDASYLRDLPEVHKNGFTAKKTRPEAI 846
Query: 764 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKN 823
+LFSCL+AFL EEPLGP DMWYCP CKEHRQATKKLDLW LPD+LVFHLKRFSYSRYLKN
Sbjct: 847 TLFSCLEAFLKEEPLGPQDMWYCPNCKEHRQATKKLDLWRLPDILVFHLKRFSYSRYLKN 906
Query: 824 KLDTFVNFPILNLDLSKYMKSKDG--ESYVYDLFAISNHYGGLGGGHYTAYAKV 875
KLDT VNFPI +LDLS+Y+K KD +S+VY+L+AISNHYGGLGGGHY+AYAK+
Sbjct: 907 KLDTLVNFPIHSLDLSQYVKCKDASSQSHVYELYAISNHYGGLGGGHYSAYAKL 960
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742456|emb|CBI34605.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255555787|ref|XP_002518929.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] gi|223541916|gb|EEF43462.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356576624|ref|XP_003556430.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|224117792|ref|XP_002317669.1| predicted protein [Populus trichocarpa] gi|222860734|gb|EEE98281.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356576622|ref|XP_003556429.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|224056675|ref|XP_002298967.1| predicted protein [Populus trichocarpa] gi|222846225|gb|EEE83772.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449456269|ref|XP_004145872.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449507201|ref|XP_004162960.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 9-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356535266|ref|XP_003536169.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P35123 | UBP4_MOUSE | 3, ., 4, ., 1, 9, ., 1, 2 | 0.3755 | 0.9361 | 0.8534 | yes | no |
| Q13107 | UBP4_HUMAN | 3, ., 4, ., 1, 9, ., 1, 2 | 0.3739 | 0.9475 | 0.8629 | yes | no |
| A6QR55 | UBP4_BOVIN | 3, ., 4, ., 1, 9, ., 1, 2 | 0.3691 | 0.9475 | 0.8629 | yes | no |
| Q9ZSB5 | UBP10_ARATH | 3, ., 4, ., 1, 9, ., 1, 2 | 0.6174 | 0.9737 | 0.9252 | yes | no |
| B2GUZ1 | UBP4_RAT | 3, ., 4, ., 1, 9, ., 1, 2 | 0.3772 | 0.9395 | 0.8574 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.19 | 0.963 |
| 3rd Layer | 3.4.19.12 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pm.C_LG_XI0421 | hypothetical protein (942 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 877 | |||
| COG5560 | 823 | COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po | 1e-135 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 1e-50 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 2e-45 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 2e-38 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 4e-31 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 1e-29 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 8e-26 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 1e-24 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 5e-24 | |
| pfam06337 | 86 | pfam06337, DUSP, DUSP domain | 6e-24 | |
| smart00695 | 88 | smart00695, DUSP, Domain in ubiquitin-specific pro | 7e-24 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 9e-22 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 8e-19 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 1e-18 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 2e-18 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 2e-17 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 3e-17 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 5e-17 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 7e-15 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 8e-15 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 9e-13 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 1e-12 | |
| cd02669 | 440 | cd02669, Peptidase_C19M, A subfamily of Peptidase | 1e-12 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 5e-12 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 1e-09 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 3e-09 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 1e-08 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 3e-08 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 7e-08 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 1e-07 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 1e-07 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 5e-07 | |
| COG5207 | 749 | COG5207, UBP14, Isopeptidase T [Posttranslational | 2e-06 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 3e-06 | |
| cd02669 | 440 | cd02669, Peptidase_C19M, A subfamily of Peptidase | 4e-06 | |
| pfam13423 | 296 | pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr | 5e-06 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 1e-05 | |
| COG5077 | 1089 | COG5077, COG5077, Ubiquitin carboxyl-terminal hydr | 8e-05 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 1e-04 | |
| COG5207 | 749 | COG5207, UBP14, Isopeptidase T [Posttranslational | 3e-04 | |
| pfam13423 | 296 | pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr | 5e-04 |
| >gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 423 bits (1088), Expect = e-135
Identities = 254/868 (29%), Positives = 353/868 (40%), Gaps = 157/868 (18%)
Query: 41 KEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQN 100
K+ + + WY D S PGPI I+
Sbjct: 42 KQCEYAVIFAYAWYEGMFDRASCDGGS---------------------PGPIVQGPIV-- 78
Query: 101 GNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWY-KGGPALPRKMISEGIVNEKR-- 157
+ + ++++L EG DY ++ VW+ L WY G P I+ + +E
Sbjct: 79 -----DFEPESLKKSLREGIDYSIISGAVWQLLVRWYGLAGLITP--RITVLLPSESAPE 131
Query: 158 VEVFXLCLKL-----IDSRDNSQTV----IRLSKKASTRQLYEKVCKLRGIEQEKARIWD 208
VE + + KL I+ + S + R L E+V + R+WD
Sbjct: 132 VESYPVVFKLHWLFSINGSLINLGHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFRLWD 191
Query: 209 YFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGISMDSTGNDLALVPIEPSRSSL 268
+ D + +L + D + L+ + P
Sbjct: 192 VVPEIMGLR--LGLDSFFRRYRVLASDGRVLHPLTRLELFEDRSVLLLSKITRNPD---- 245
Query: 269 TIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNT 328
S N+ + G GL+NLGNT
Sbjct: 246 ----WLVDSIVDDHNRSINK---------------------------EAGTCGLRNLGNT 274
Query: 329 CFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAV 387
C+MNSALQCL+HT +L YFL D Y + IN ENPLGMHG +A A+ DL+++L+ A
Sbjct: 275 CYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAF 334
Query: 388 APRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEE 447
P FK + F +FSGY+Q DSQE +AFLLDGLHEDLNR+ +KPY D D
Sbjct: 335 TPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVV 394
Query: 448 V---ANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTR 504
V A ECW H RNDS+I D+FQG YKSTL CP C VSITFDPFM LTLPLP ++
Sbjct: 395 VKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVW 454
Query: 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRF 564
T+ VF +G P + L + L + + + +Y +
Sbjct: 455 KHTIVVFPESGR--RQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNM 512
Query: 565 FENPAELISS-IKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAP- 622
E +++ I + + Y I K +LFG P
Sbjct: 513 LEPADKVLLQDIPQTDFVYLY-------ETNDNGIEVPVVHLRIEKGYKSK--RLFGDPF 563
Query: 623 --------------LVTYLEE--EHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFL 666
LV EE + D+ + L R SS
Sbjct: 564 LQLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSP--------SSW 615
Query: 667 PEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILKPGKHIKVL 726
++ E+ E VE Q++ D + SC K L
Sbjct: 616 LKLETEIDTKREEQVEEEG-----------QMNFNDAVVISC--------EWEEKRYLSL 656
Query: 727 LDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYC 786
YDP + + + G + I+L CL+ F E LG D WYC
Sbjct: 657 FS--------YDPLWT-----IREIGAAERT-----ITLQDCLNEFSKPEQLGLSDSWYC 698
Query: 787 PQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKD 846
P CKE RQA+K+++LW LP +L+ HLKRFS R ++K+D V +PI +LDLS D
Sbjct: 699 PGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVD 758
Query: 847 GESYVYDLFAISNHYGGLGGGHYTAYAK 874
+YDL+A+ NHYGGL GGHYTAYA+
Sbjct: 759 DPRLIYDLYAVDNHYGGLSGGHYTAYAR 786
|
Length = 823 |
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|218995 pfam06337, DUSP, DUSP domain | Back alignment and domain information |
|---|
| >gnl|CDD|197831 smart00695, DUSP, Domain in ubiquitin-specific proteases | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 877 | |||
| COG5560 | 823 | UBP12 Ubiquitin C-terminal hydrolase [Posttranslat | 100.0 | |
| KOG1870 | 842 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| COG5533 | 415 | UBP5 Ubiquitin C-terminal hydrolase [Posttranslati | 100.0 | |
| KOG1865 | 545 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02663 | 300 | Peptidase_C19G A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02671 | 332 | Peptidase_C19O A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02668 | 324 | Peptidase_C19L A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02660 | 328 | Peptidase_C19D A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02667 | 279 | Peptidase_C19K A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02669 | 440 | Peptidase_C19M A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02664 | 327 | Peptidase_C19H A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1868 | 653 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| cd02657 | 305 | Peptidase_C19A A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02658 | 311 | Peptidase_C19B A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02661 | 304 | Peptidase_C19E A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02659 | 334 | peptidase_C19C A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02662 | 240 | Peptidase_C19F A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02674 | 230 | Peptidase_C19R A subfamily of peptidase C19. Pepti | 100.0 | |
| KOG1873 | 877 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| KOG0944 | 763 | consensus Ubiquitin-specific protease UBP14 [Postt | 100.0 | |
| KOG1867 | 492 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| cd02666 | 343 | Peptidase_C19J A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02665 | 228 | Peptidase_C19I A subfamily of Peptidase C19. Pepti | 100.0 | |
| PF00443 | 269 | UCH: Ubiquitin carboxyl-terminal hydrolase; InterP | 100.0 | |
| cd02673 | 245 | Peptidase_C19Q A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1866 | 944 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| COG5077 | 1089 | Ubiquitin carboxyl-terminal hydrolase [Posttransla | 100.0 | |
| COG5207 | 749 | UBP14 Isopeptidase T [Posttranslational modificati | 100.0 | |
| cd02257 | 255 | Peptidase_C19 Peptidase C19 contains ubiquitinyl h | 99.98 | |
| cd02672 | 268 | Peptidase_C19P A subfamily of Peptidase C19. Pepti | 99.97 | |
| KOG4598 | 1203 | consensus Putative ubiquitin-specific protease [Po | 99.97 | |
| KOG1863 | 1093 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 99.97 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 99.96 | |
| cd02670 | 241 | Peptidase_C19N A subfamily of Peptidase C19. Pepti | 99.94 | |
| PF13423 | 295 | UCH_1: Ubiquitin carboxyl-terminal hydrolase | 99.94 | |
| KOG2026 | 442 | consensus Spindle pole body protein - Sad1p [Cytos | 99.91 | |
| KOG1871 | 420 | consensus Ubiquitin-specific protease [Posttransla | 99.89 | |
| PF06337 | 99 | DUSP: DUSP domain; InterPro: IPR006615 Deubiquitin | 99.84 | |
| KOG1872 | 473 | consensus Ubiquitin-specific protease [Posttransla | 99.8 | |
| smart00695 | 86 | DUSP Domain in ubiquitin-specific proteases. | 99.8 | |
| PF14836 | 88 | Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A | 98.75 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.62 | |
| PF14533 | 213 | USP7_C2: Ubiquitin-specific protease C-terminal; P | 97.32 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 97.02 | |
| PF14560 | 87 | Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K | 93.16 | |
| cd01796 | 71 | DDI1_N DNA damage inducible protein 1 ubiquitin-li | 92.85 | |
| cd01763 | 87 | Sumo Small ubiquitin-related modifier (SUMO). Smal | 92.42 | |
| PTZ00044 | 76 | ubiquitin; Provisional | 92.28 | |
| cd01806 | 76 | Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn | 91.35 | |
| cd01789 | 84 | Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol | 91.23 | |
| cd01812 | 71 | BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter | 90.69 | |
| cd01807 | 74 | GDX_N ubiquitin-like domain of GDX. GDX contains a | 90.65 | |
| cd01803 | 76 | Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 | 89.35 | |
| cd01810 | 74 | ISG15_repeat2 ISG15 ubiquitin-like protein, second | 87.84 | |
| cd01799 | 75 | Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO | 87.75 | |
| cd01808 | 71 | hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC | 87.34 | |
| PF11976 | 72 | Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter | 87.22 | |
| cd01798 | 70 | parkin_N amino-terminal ubiquitin-like of parkin p | 87.09 | |
| cd01802 | 103 | AN1_N ubiquitin-like domain of AN1. AN1 (also know | 87.01 | |
| cd01794 | 70 | DC_UbP_C dendritic cell derived ubiquitin-like pro | 85.43 | |
| cd01793 | 74 | Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui | 85.4 | |
| PF00240 | 69 | ubiquitin: Ubiquitin family; InterPro: IPR000626 U | 83.88 | |
| cd01809 | 72 | Scythe_N Ubiquitin-like domain of Scythe protein. | 82.98 | |
| cd01805 | 77 | RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo | 82.14 | |
| cd01795 | 107 | USP48_C USP ubiquitin-specific protease. The USP ( | 82.06 | |
| cd01800 | 76 | SF3a120_C Ubiquitin-like domain of Mammalian splic | 81.93 | |
| cd01797 | 78 | NIRF_N amino-terminal ubiquitin-like domain of Np9 | 81.4 | |
| cd01792 | 80 | ISG15_repeat1 ISG15 ubiquitin-like protein, first | 81.0 | |
| PF11543 | 80 | UN_NPL4: Nuclear pore localisation protein NPL4; I | 80.9 |
| >COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-106 Score=878.05 Aligned_cols=736 Identities=32% Similarity=0.545 Sum_probs=538.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCEEEEEchhHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcChhhccCC
Q 002810 22 PDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNG 101 (877)
Q Consensus 22 ~~~e~~~i~~l~~~~~~~~~~g~~~YlIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pgpIdNs~Ll~~~ 101 (877)
-.+|++.|.+ +. ...-+.++..|+++..|++...++...+ ++.||||+-..|++-
T Consensus 26 ~~~q~~li~e--~~-~e~~k~~~~a~i~~y~wyeg~fd~~~~d---------------------g~~pgPi~q~~i~d~- 80 (823)
T COG5560 26 LMMQEELIDE--KP-AESSKQCEYAVIFAYAWYEGMFDRASCD---------------------GGSPGPIVQGPIVDF- 80 (823)
T ss_pred hHHHHHHHhc--Cc-hhhhccCceEEEEehHHhhhhccccccc---------------------CCCCCCCCccccccc-
Confidence 5667777766 11 1223458899999999999988876543 268999999999972
Q ss_pred CCCCCCCcchhcccccCCCcEEEeCHHHHHHHHHHhC-CCCCCceeEeecCcccceeeeeccceEEEEecCCC-------
Q 002810 102 NGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYK-GGPALPRKMISEGIVNEKRVEVFXLCLKLIDSRDN------- 173 (877)
Q Consensus 102 ~~~~~~~~~~Lk~~l~e~~Dy~~Vp~~~W~~l~~wYG-~~~~I~R~vi~~~~~~~~~vEvyP~~l~i~~~~~~------- 173 (877)
....|++.+.++.||-+|+..+|++|++||| .|+.++|.++.-+......+|+||+.|++..+...
T Consensus 81 ------e~e~lk~sl~e~idysiis~~vw~llvrwyGl~gl~~pr~tvll~ses~p~ve~yp~~f~lh~Lf~ing~~~n~ 154 (823)
T COG5560 81 ------EPESLKKSLREGIDYSIISGAVWQLLVRWYGLAGLITPRITVLLPSESAPEVESYPVVFKLHWLFSINGSLINL 154 (823)
T ss_pred ------ChhhcchhhhcCCCeeeechHHHHHHHHHhcccccceeeEEeccccccCCccccccceEEEEEEEeccchhhhc
Confidence 2457899999999999999999999999999 47889999976654333379999999998776431
Q ss_pred --CceEEEeChhchHHHHHHHHHHHhCCCCcceEEEEecCCCccccCCCCccCChhhh--hccCCce----EEEEEEecC
Q 002810 174 --SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDA--MLQMDQD----ILLEVQVDN 245 (877)
Q Consensus 174 --~~~~~~~S~~~tv~~l~~~~~~~~~l~~~~~RlW~~~~~~~~~~ll~~~~~tl~d~--~l~~~q~----ilve~~~~~ 245 (877)
....+.+|+..|+.++.+++...|-++.+++|||++...+..-.+... .+.... ....++. ..+|.-.+.
T Consensus 155 gh~p~~~s~ss~~tlrdl~e~vmnaf~~psD~FRLw~v~~~~~~~r~~~~--s~f~~~~~~a~~~~~l~~~t~~el~~d~ 232 (823)
T COG5560 155 GHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFRLWDVVPEIMGLRLGLD--SFFRRYRVLASDGRVLHPLTRLELFEDR 232 (823)
T ss_pred CCCcceeeccccchHHHHHHHHHHHhcCcccceeEEEecCCcccccccCH--HHHhhcchhccchhhhcccHHHHhccch
Confidence 235678899999999999999999999999999999765543111110 000000 0000000 001111000
Q ss_pred ccccCCCCCCCccccccCCCCcccccCCCCCcCCCccCcccCCCCCCCCCCCCCCCCCCcCcccccccCCCCCccccccC
Q 002810 246 GISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNL 325 (877)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~Nl 325 (877)
+..-+ ...+.|+.-.. .+ . ..+..+.. + ..-|.+||.|+
T Consensus 233 --------------------s~lll--~kit~np~wlv-----------ds-i-~~~~n~si--n----ke~GtcGL~Nl 271 (823)
T COG5560 233 --------------------SVLLL--SKITRNPDWLV-----------DS-I-VDDHNRSI--N----KEAGTCGLRNL 271 (823)
T ss_pred --------------------hhhHH--hhhccCCccce-----------ee-e-cchhhhhH--H----hhccccceecC
Confidence 00000 00001100000 00 0 00111111 1 12499999999
Q ss_pred CCcchHHHHHHHHhCChHHHHHHHhc-CcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHhhhcCCCC
Q 002810 326 GNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFS 404 (877)
Q Consensus 326 GNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~~~F~ 404 (877)
||||||||+||||.|++.||+||+.. |..++|..||+|+.|.++.+|+.|+++++.+...+++|..|+..||.++..|.
T Consensus 272 GNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~tIG~fn~~fs 351 (823)
T COG5560 272 GNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFS 351 (823)
T ss_pred CcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHHHhhhHHHhc
Confidence 99999999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCCh---HHHhHHHHhhccccCCCccccceeEEEEEEEEcCCC
Q 002810 405 GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPD---EEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVC 481 (877)
Q Consensus 405 ~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~---~~~a~~~w~~~~~~~~sii~~lF~G~~~s~~~C~~C 481 (877)
||.|||+|||+.+|||+|||+|||+.+|||.+.+|-....+ ...|+++|..|++||+|+|++||+|.++|+++|+.|
T Consensus 352 Gy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyKSTL~Cp~C 431 (823)
T COG5560 352 GYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGC 431 (823)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhceeeccCc
Confidence 99999999999999999999999999999999988765554 456899999999999999999999999999999999
Q ss_pred CCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEEEEeCCce
Q 002810 482 SKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQI 561 (877)
Q Consensus 482 ~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~ 561 (877)
+.+|++||||++|+||||....|...|.+||.+|...| ..+++...+++.+|++.+..+.|+-.--.+.+.++|.+..
T Consensus 432 ~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~p--l~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g~~ 509 (823)
T COG5560 432 GSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQP--LKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGN 509 (823)
T ss_pred CceeeeecchhhccccCchhhcccccEEEECCCCCCCc--eEEEEeccchHHHHHHHHHHHhccCCccceeEEEEEeccc
Confidence 99999999999999999999999999999999999888 6677888888888888888777765555788899999999
Q ss_pred eEeccCCccc-ccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEE-EecCCCCCHHHHHH
Q 002810 562 FRFFENPAEL-ISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVT-YLEEEHLSGADIDI 639 (877)
Q Consensus 562 ~~~~~d~~~~-~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~-~i~~~~~~~~~~~~ 639 (877)
++.+...... +..|.+.|.+|.|+ ..++...++++|-+.+.. ..+.+.||.|++. .+.....-.+.+..
T Consensus 510 y~~l~~~dk~ll~~I~~~d~vylYe---~~~ngi~vpvvh~~~~~g------Yks~rlFg~pflqlnv~~~~~i~~kLvk 580 (823)
T COG5560 510 YNMLEPADKVLLQDIPQTDFVYLYE---TNDNGIEVPVVHLRIEKG------YKSKRLFGDPFLQLNVLIKASIYDKLVK 580 (823)
T ss_pred hhhcchhhHHHHhhcCccceEEEee---cCCCCeEEEEEecccccc------ccchhhhCCcceEEEeecchhhHHHHHH
Confidence 9998876664 56799999999999 445557888998865442 4566899999732 22222222222211
Q ss_pred HHHHHccccccc-cccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCccCCCCC
Q 002810 640 AVSKLLSPLRRT-YSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILK 718 (877)
Q Consensus 640 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (877)
...+.+...... ..-+..+. +-.. ... +.......++++. -+.+..+.........
T Consensus 581 E~~ell~~v~~k~tdvd~~~~---q~~l--~r~-----es~p~~wl~l~te-------------id~kree~veeE~~~n 637 (823)
T COG5560 581 EFEELLVLVEMKKTDVDLVSE---QVRL--LRE-----ESSPSSWLKLETE-------------IDTKREEQVEEEGQMN 637 (823)
T ss_pred HHHHHHHHHhhcchhhhhhhh---hccc--hhc-----ccCcchhhhhhhh-------------ccchhhhhhhhhhccC
Confidence 111111100000 00000000 0000 000 0000000000000 0000000000000112
Q ss_pred CCCcEEEEEeeccccccc-cC--cccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCcccee
Q 002810 719 PGKHIKVLLDWTDDVHEL-YD--PSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 795 (877)
Q Consensus 719 ~~~~~~i~~~w~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~a 795 (877)
.+..+.|.++|.+..... |. +.... .+.+ ...+.+||+|||.+|.++|+|+..|.||||.||++++|
T Consensus 638 ~nd~vvi~cew~ek~y~~lFsy~~lw~~-----~ei~-----~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqa 707 (823)
T COG5560 638 FNDAVVISCEWEEKRYLSLFSYDPLWTI-----REIG-----AAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQA 707 (823)
T ss_pred CCcceEEeeeccccchhhhhcCCccchh-----HHhh-----hccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhh
Confidence 345677889998765544 42 11000 0000 01468999999999999999999999999999999999
Q ss_pred EEEEEeecCCCeEEEEEeceeecCCcccccceeEeccCCCCCcccccccCCCCCceEEEEEEEEeeccCCCCcEEEEEEe
Q 002810 796 TKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKV 875 (877)
Q Consensus 796 ~K~~~i~~lP~iLiihLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~v~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~ 875 (877)
+|+|+||++|+|||||||||++.+.+++||+++|.|||.+|||+.++....+...+|+||||.||+|++||||||||||+
T Consensus 708 sKqmelwrlP~iLiihLkRFss~rsfrdKiddlVeyPiddldLs~~~~~~~~p~liydlyavDNHygglsgGHYtAyarn 787 (823)
T COG5560 708 SKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYARN 787 (823)
T ss_pred hhhhhhhcCChheeeehhhhhhcccchhhhhhhhccccccccccceEEeecCcceEEEeeeccccccccCCcceeeeeec
Confidence 99999999999999999999999999999999999999999999999887767799999999999999999999999998
|
|
| >KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02663 Peptidase_C19G A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02671 Peptidase_C19O A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02668 Peptidase_C19L A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02660 Peptidase_C19D A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02667 Peptidase_C19K A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02669 Peptidase_C19M A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02664 Peptidase_C19H A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02657 Peptidase_C19A A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02658 Peptidase_C19B A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02661 Peptidase_C19E A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02659 peptidase_C19C A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02662 Peptidase_C19F A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02674 Peptidase_C19R A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02666 Peptidase_C19J A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02665 Peptidase_C19I A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >cd02673 Peptidase_C19Q A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >cd02672 Peptidase_C19P A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02670 Peptidase_C19N A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins | Back alignment and domain information |
|---|
| >KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00695 DUSP Domain in ubiquitin-specific proteases | Back alignment and domain information |
|---|
| >PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A | Back alignment and domain information |
|---|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A | Back alignment and domain information |
|---|
| >cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain | Back alignment and domain information |
|---|
| >cd01763 Sumo Small ubiquitin-related modifier (SUMO) | Back alignment and domain information |
|---|
| >PTZ00044 ubiquitin; Provisional | Back alignment and domain information |
|---|
| >cd01806 Nedd8 Nebb8-like ubiquitin protein | Back alignment and domain information |
|---|
| >cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B | Back alignment and domain information |
|---|
| >cd01812 BAG1_N Ubiquitin-like domain of BAG1 | Back alignment and domain information |
|---|
| >cd01807 GDX_N ubiquitin-like domain of GDX | Back alignment and domain information |
|---|
| >cd01803 Ubiquitin Ubiquitin | Back alignment and domain information |
|---|
| >cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 | Back alignment and domain information |
|---|
| >cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 | Back alignment and domain information |
|---|
| >cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 | Back alignment and domain information |
|---|
| >PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins | Back alignment and domain information |
|---|
| >cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein | Back alignment and domain information |
|---|
| >cd01802 AN1_N ubiquitin-like domain of AN1 | Back alignment and domain information |
|---|
| >cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01793 Fubi Fubi ubiquitin-like protein | Back alignment and domain information |
|---|
| >PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade | Back alignment and domain information |
|---|
| >cd01809 Scythe_N Ubiquitin-like domain of Scythe protein | Back alignment and domain information |
|---|
| >cd01805 RAD23_N Ubiquitin-like domain of RAD23 | Back alignment and domain information |
|---|
| >cd01795 USP48_C USP ubiquitin-specific protease | Back alignment and domain information |
|---|
| >cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 | Back alignment and domain information |
|---|
| >cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF | Back alignment and domain information |
|---|
| >cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 | Back alignment and domain information |
|---|
| >PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 877 | ||||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 6e-70 | ||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 4e-37 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 5e-45 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 2e-26 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 8e-43 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 2e-26 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 3e-35 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 3e-18 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 3e-35 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 3e-18 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 4e-35 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 6e-18 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 5e-34 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 4e-18 | ||
| 3i3t_A | 355 | Crystal Structure Of Covalent Ubiquitin-usp21 Compl | 5e-27 | ||
| 3i3t_A | 355 | Crystal Structure Of Covalent Ubiquitin-usp21 Compl | 3e-16 | ||
| 2y5b_A | 370 | Structure Of Usp21 In Complex With Linear Diubiquit | 5e-27 | ||
| 2y5b_A | 370 | Structure Of Usp21 In Complex With Linear Diubiquit | 3e-16 | ||
| 3mtn_A | 373 | Usp21 In Complex With A Ubiquitin-based, Usp21-spec | 5e-27 | ||
| 3mtn_A | 373 | Usp21 In Complex With A Ubiquitin-based, Usp21-spec | 2e-16 | ||
| 3pv1_A | 225 | Crystal Structure Of The Usp15 Dusp-Ubl Domains Len | 8e-20 | ||
| 3t9l_A | 230 | Structure Of N-Terminal Dusp-Ubl Domains Of Human U | 1e-19 | ||
| 3ppa_A | 237 | Structure Of The Dusp-Ubl Domains Of Usp15 Length = | 1e-19 | ||
| 4a3o_A | 220 | Crystal Structure Of The Usp15 Dusp-Ubl Monomer Len | 2e-19 | ||
| 4a3p_A | 217 | Structure Of Usp15 Dusp-Ubl Deletion Mutant Length | 6e-19 | ||
| 3jyu_A | 231 | Crystal Structure Of The N-Terminal Domains Of The | 4e-16 | ||
| 3m99_A | 471 | Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod | 1e-12 | ||
| 3mhh_A | 476 | Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE | 1e-12 | ||
| 4fip_A | 476 | Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- | 1e-12 | ||
| 3lmn_A | 135 | Oligomeric Structure Of The Dusp Domain Of Human Us | 2e-12 | ||
| 1w6v_A | 141 | Solution Structure Of The Dusp Domain Of Husp15 Len | 5e-11 | ||
| 3ihp_A | 854 | Covalent Ubiquitin-Usp5 Complex Length = 854 | 1e-05 |
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
|
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 | Back alignment and structure |
| >pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 | Back alignment and structure |
| >pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 | Back alignment and structure |
| >pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 | Back alignment and structure |
| >pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 | Back alignment and structure |
| >pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 | Back alignment and structure |
| >pdb|3PV1|A Chain A, Crystal Structure Of The Usp15 Dusp-Ubl Domains Length = 225 | Back alignment and structure |
| >pdb|3T9L|A Chain A, Structure Of N-Terminal Dusp-Ubl Domains Of Human Usp15 Length = 230 | Back alignment and structure |
| >pdb|3PPA|A Chain A, Structure Of The Dusp-Ubl Domains Of Usp15 Length = 237 | Back alignment and structure |
| >pdb|4A3O|A Chain A, Crystal Structure Of The Usp15 Dusp-Ubl Monomer Length = 220 | Back alignment and structure |
| >pdb|4A3P|A Chain A, Structure Of Usp15 Dusp-Ubl Deletion Mutant Length = 217 | Back alignment and structure |
| >pdb|3JYU|A Chain A, Crystal Structure Of The N-Terminal Domains Of The Ubiquitin Specific Peptidase 4 (Usp4) Length = 231 | Back alignment and structure |
| >pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 | Back alignment and structure |
| >pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 | Back alignment and structure |
| >pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 | Back alignment and structure |
| >pdb|3LMN|A Chain A, Oligomeric Structure Of The Dusp Domain Of Human Usp15 Length = 135 | Back alignment and structure |
| >pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex Length = 854 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
Score = 306 bits (786), Expect = 2e-96
Identities = 99/247 (40%), Positives = 137/247 (55%), Gaps = 4/247 (1%)
Query: 264 SRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQ 323
S L G P ++ + YP + + N G L GL+
Sbjct: 10 HSSGLVPRGSPTVTPTVNRENKPTCYPKAEISRLS---ASQIRNLNPVFGGSGPALTGLR 66
Query: 324 NLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRKLWSS 382
NLGNTC+MNS LQCL + P LA YF Y D+IN N LG GE+A FG +++ LW+
Sbjct: 67 NLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTG 126
Query: 383 GRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGG 442
++P+ FK + + QF+GY+Q DSQELL FL+DGLHEDLN+ + + +++
Sbjct: 127 QYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDH 186
Query: 443 RPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTV 502
D + A W+ HK N+S+IV +FQGQ+KST+ C C K S TF+ FMYL+LPL ST
Sbjct: 187 LDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTS 246
Query: 503 TRTMTVT 509
T+
Sbjct: 247 KCTLQDC 253
|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} Length = 231 | Back alignment and structure |
|---|
| >4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A Length = 217 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} Length = 530 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 877 | |||
| 2y6e_A | 367 | Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; | 100.0 | |
| 2gfo_A | 396 | Ubiquitin carboxyl-terminal hydrolase 8; protease, | 100.0 | |
| 3nhe_A | 348 | Ubiquitin carboxyl-terminal hydrolase 2; cysteine | 100.0 | |
| 3i3t_A | 355 | Ubiquitin carboxyl-terminal hydrolase 21; hydrolas | 100.0 | |
| 1nb8_A | 353 | Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub | 100.0 | |
| 2ayn_A | 404 | Ubiquitin carboxyl-terminal hydrolase 14; deubiqui | 100.0 | |
| 3mhs_A | 476 | Ubiquitin carboxyl-terminal hydrolase 8; multi-pro | 100.0 | |
| 2f1z_A | 522 | Ubiquitin carboxyl-terminal hydrolase 7; hausp, US | 100.0 | |
| 1vjv_A | 415 | Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, | 100.0 | |
| 3ihp_A | 854 | Ubiquitin carboxyl-terminal hydrolase 5; hydrolase | 100.0 | |
| 3jyu_A | 231 | Ubiquitin carboxyl-terminal hydrolase; domain in u | 100.0 | |
| 4a3p_A | 217 | Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H | 100.0 | |
| 1w6v_A | 141 | Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP | 99.92 | |
| 2vhf_A | 374 | Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki | 99.9 | |
| 2ylm_A | 530 | Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70 | 98.87 | |
| 1wjn_A | 97 | Tubulin-folding protein TBCE; ubiquitin-like domai | 91.94 | |
| 2kj6_A | 97 | Tubulin folding cofactor B; methods development, N | 91.81 | |
| 4b6w_A | 86 | Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik | 91.28 | |
| 2uyz_B | 79 | Small ubiquitin-related modifier 1; sumoylation, c | 90.91 | |
| 2kan_A | 94 | Uncharacterized protein AR3433A; ubiquitin fold, a | 90.9 | |
| 2kjr_A | 95 | CG11242; UBL, ubiquitin, ubiquitin-like, structura | 90.73 | |
| 3plu_A | 93 | Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- | 90.71 | |
| 4dbg_A | 105 | Ranbp-type and C3HC4-type zinc finger-containing; | 90.42 | |
| 3a9j_A | 76 | Ubiquitin; protein complex, cytoplasm, isopeptide | 89.94 | |
| 1wh3_A | 87 | 59 kDa 2'-5'-oligoadenylate synthetase like protei | 89.9 | |
| 3n3k_B | 85 | Ubiquitin; hydrolase, protease, thiol protease, DU | 89.7 | |
| 3phx_B | 79 | Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu | 89.69 | |
| 1wyw_B | 97 | Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho | 89.56 | |
| 3k9o_B | 96 | Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b | 89.27 | |
| 3a4r_A | 79 | Nfatc2-interacting protein; ubiquitin fold, coiled | 89.21 | |
| 1ndd_A | 76 | NEDD8, protein (ubiquitin-like protein NEDD8); pro | 89.11 | |
| 1wx7_A | 106 | Ubiquilin 3; ubiquitin-like domain, structural gen | 89.05 | |
| 3mtn_B | 85 | UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit | 89.03 | |
| 1yqb_A | 100 | Ubiquilin 3; structural genomics consortium, ubiqu | 88.9 | |
| 2hj8_A | 88 | Interferon-induced 17 kDa protein; HR2873B, human | 88.7 | |
| 1sif_A | 88 | Ubiquitin; hydrophobic mutants, folding, stability | 88.65 | |
| 3v6c_B | 91 | Ubiquitin; structural genomics, structural genomic | 88.64 | |
| 2l7r_A | 93 | Ubiquitin-like protein FUBI; structural genomics, | 88.41 | |
| 2bwf_A | 77 | Ubiquitin-like protein DSK2; signaling protein, UB | 88.38 | |
| 4fbj_B | 88 | NEDD8; effector-HOST target complex, glutamine dea | 87.87 | |
| 1j8c_A | 125 | Ubiquitin-like protein hplic-2; ubiquitin-like dom | 87.42 | |
| 4hcn_B | 98 | Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas | 87.32 | |
| 3dbh_I | 88 | NEDD8; cell cycle, activating enzyme, apoptosis, m | 87.07 | |
| 1wy8_A | 89 | NP95-like ring finger protein, isoform A; ubiquiti | 86.96 | |
| 3vdz_A | 111 | Ubiquitin-40S ribosomal protein S27A; gadolinium, | 86.9 | |
| 2eke_C | 106 | Ubiquitin-like protein SMT3; UBC9, SUMO binding mo | 86.58 | |
| 1v5o_A | 102 | 1700011N24RIK protein; hypothetical protein, ubiqu | 86.51 | |
| 1wxv_A | 92 | BAG-family molecular chaperone regulator-1; struct | 86.48 | |
| 2klc_A | 101 | Ubiquilin-1; ubiquitin-like, structural genomics, | 86.42 | |
| 4dwf_A | 90 | HLA-B-associated transcript 3; ubiquitin-like doma | 86.38 | |
| 1yx5_B | 98 | Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s | 86.33 | |
| 1wju_A | 100 | NEDD8 ultimate buster-1; ubiquitin-like domain, st | 86.08 | |
| 2io0_B | 91 | Small ubiquitin-related modifier 2 precursor; SUMO | 86.01 | |
| 2kd0_A | 85 | LRR repeats and ubiquitin-like domain-containing p | 85.99 | |
| 2daf_A | 118 | FLJ35834 protein; hypothetical protein FLJ35834, u | 85.66 | |
| 2io1_B | 94 | Small ubiquitin-related modifier 3 precursor; SUMO | 84.98 | |
| 1wm3_A | 72 | Ubiquitin-like protein SMT3B; ubiquitin fold, half | 84.87 | |
| 1t0y_A | 122 | Tubulin folding cofactor B; ubiquitin-like, cytosk | 84.72 | |
| 1v6e_A | 95 | Cytoskeleton-associated protein 1; tubulin-specifi | 84.53 | |
| 2ojr_A | 111 | Ubiquitin; lanthide-binding TAG, terbium, TB, SAD | 84.4 | |
| 2d07_B | 93 | Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho | 84.14 | |
| 2faz_A | 78 | Ubiquitin-like containing PHD and ring finger DOM | 83.99 | |
| 2kdi_A | 114 | Ubiquitin, vacuolar protein sorting-associated pro | 83.98 | |
| 4eew_A | 88 | Large proline-rich protein BAG6; ubiquitin-like fo | 83.92 | |
| 3m63_B | 101 | Ubiquitin domain-containing protein DSK2; armadill | 83.49 | |
| 1wx8_A | 96 | Riken cDNA 4931431F19; ubiquitin-like domain, ubiq | 83.13 | |
| 2kk8_A | 84 | Uncharacterized protein AT4G05270; solution arabid | 83.1 | |
| 1we6_A | 111 | Splicing factor, putative; structural genomics, ub | 82.86 | |
| 4ajy_B | 118 | Transcription elongation factor B polypeptide 2; E | 82.59 | |
| 3kyd_D | 115 | Small ubiquitin-related modifier 1; SUMO, thioeste | 82.41 | |
| 2wyq_A | 85 | HHR23A, UV excision repair protein RAD23 homolog A | 82.22 | |
| 2fnj_B | 118 | Transcription elongation factor B polypeptide 2; b | 81.98 | |
| 1uh6_A | 100 | Ubiquitin-like 5; beta-grAsp fold, structural geno | 81.68 | |
| 2jxx_A | 97 | Nfatc2-interacting protein; nuclear factor of acti | 81.67 | |
| 2dzi_A | 81 | Ubiquitin-like protein 4A; GDX, structural genomic | 81.63 | |
| 1wz0_A | 104 | Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li | 81.19 | |
| 2k8h_A | 110 | Small ubiquitin protein; SUMO, post-translational | 80.86 | |
| 1we7_A | 115 | SF3A1 protein; structural genomics, ubiquitin-like | 80.18 |
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-67 Score=590.72 Aligned_cols=321 Identities=61% Similarity=1.091 Sum_probs=286.2
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHH
Q 002810 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAF 392 (877)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~ 392 (877)
.+.+|++||.|+||||||||+||||+|+|+|+++|+.. +...++..++.+..+.++.+|+.|+..||.+...+++|..|
T Consensus 3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~ 82 (367)
T 2y6e_A 3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMF 82 (367)
T ss_dssp -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHH
T ss_pred CCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 35689999999999999999999999999999999987 66677778888888999999999999999988899999999
Q ss_pred HHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEE
Q 002810 393 KGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQY 472 (877)
Q Consensus 393 ~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~ 472 (877)
+.++++..|.|.+++||||||||.+|||.||+++++..++++.+..+.++.++...+.+.|..+..++.|+|.++|+|++
T Consensus 83 ~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l 162 (367)
T 2y6e_A 83 KTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLF 162 (367)
T ss_dssp HHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEE
T ss_pred HHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEE
Q 002810 473 KSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLL 552 (877)
Q Consensus 473 ~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 552 (877)
+++++|..|+++|.++|+|++|+|+||......+.+.+
T Consensus 163 ~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~------------------------------------------ 200 (367)
T 2y6e_A 163 KSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPM------------------------------------------ 200 (367)
T ss_dssp EEEEECTTTCCEEEEEEEESSEEEECCC----------------------------------------------------
T ss_pred eeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeee------------------------------------------
Confidence 99999999999999999999999999975421000000
Q ss_pred EEEEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCCC
Q 002810 553 LAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHL 632 (877)
Q Consensus 553 ~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~~ 632 (877)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCc
Q 002810 633 SGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQ 712 (877)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (877)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCcc
Q 002810 713 KDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEH 792 (877)
Q Consensus 713 ~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~ 792 (877)
|.+. ......++|++||+.|+++|.|+++|.|+|++|+++
T Consensus 201 ----------------~~~~------------------------~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~ 240 (367)
T 2y6e_A 201 ----------------LQPQ------------------------KKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKH 240 (367)
T ss_dssp -------------------------------------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEE
T ss_pred ----------------eccc------------------------cccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCC
Confidence 0000 000124589999999999999999999999999999
Q ss_pred ceeEEEEEeecCCCeEEEEEeceeecCCcccccceeEeccCCCCCcccccccCCCCCceEEEEEEEEeeccCCCCcEEEE
Q 002810 793 RQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAY 872 (877)
Q Consensus 793 ~~a~K~~~i~~lP~iLiihLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~v~~~~~~~~~YdL~AVinH~G~l~gGHYtAy 872 (877)
+.|+|++.|+++|+|||||||||.++++.+.|+++.|+||++.|||++|+..+...+..|+|+|||+|.|++++|||+||
T Consensus 241 ~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~ 320 (367)
T 2y6e_A 241 QQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAY 320 (367)
T ss_dssp ECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECSSSSCEEEEE
T ss_pred ceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCCCCCCCeeeEE
Confidence 99999999999999999999999999888899999999997789999999987767789999999999999999999999
Q ss_pred EEeC
Q 002810 873 AKVN 876 (877)
Q Consensus 873 ~k~~ 876 (877)
+|+.
T Consensus 321 ~~~~ 324 (367)
T 2y6e_A 321 AKNK 324 (367)
T ss_dssp EECT
T ss_pred EEcC
Confidence 9974
|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} | Back alignment and structure |
|---|
| >4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A | Back alignment and structure |
|---|
| >2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} | Back alignment and structure |
|---|
| >2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927} | Back alignment and structure |
|---|
| >2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B | Back alignment and structure |
|---|
| >2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A | Back alignment and structure |
|---|
| >4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A | Back alignment and structure |
|---|
| >3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... | Back alignment and structure |
|---|
| >1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C | Back alignment and structure |
|---|
| >3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A | Back alignment and structure |
|---|
| >3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A | Back alignment and structure |
|---|
| >1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A | Back alignment and structure |
|---|
| >1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B | Back alignment and structure |
|---|
| >2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S | Back alignment and structure |
|---|
| >4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B | Back alignment and structure |
|---|
| >1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I | Back alignment and structure |
|---|
| >1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A | Back alignment and structure |
|---|
| >2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A | Back alignment and structure |
|---|
| >1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B | Back alignment and structure |
|---|
| >1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B | Back alignment and structure |
|---|
| >1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A | Back alignment and structure |
|---|
| >2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
| >3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A* | Back alignment and structure |
|---|
| >3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A | Back alignment and structure |
|---|
| >2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A | Back alignment and structure |
|---|
| >1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} | Back alignment and structure |
|---|
| >1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 877 | ||||
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 6e-45 | |
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 7e-24 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 1e-39 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 1e-21 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 1e-36 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 3e-08 | |
| d1w6va1 | 120 | d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hy | 3e-32 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 7e-22 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 1e-07 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 0.004 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 3e-20 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 8e-08 |
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 163 bits (412), Expect = 6e-45
Identities = 91/190 (47%), Positives = 125/190 (65%), Gaps = 1/190 (0%)
Query: 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLL 376
L GL+NLGNTC+MNS LQCL + P LA YF + Y D+IN N LG GE+A FG ++
Sbjct: 14 ALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIM 73
Query: 377 RKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE 436
+ LW+ ++P+ FK + + QF+GY+Q DSQELL FL+DGLHEDLN+ + +
Sbjct: 74 KALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYK 133
Query: 437 MKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTL 496
+++ D + A W+ HK N+S+IV +FQGQ+KST+ C C K S TF+ FMYL+L
Sbjct: 134 EENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSL 193
Query: 497 PLPSTVTRTM 506
PL ST T+
Sbjct: 194 PLASTSKCTL 203
|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d1w6va1 d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hydrolase 15 {Human (Homo sapiens) [TaxId: 9606]} Length = 120 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 877 | |||
| d1nbfa_ | 347 | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU | 100.0 | |
| d2gfoa1 | 348 | Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho | 100.0 | |
| d2hd5a1 | 336 | Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum | 100.0 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 100.0 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 100.0 | |
| d1w6va1 | 120 | Ubiquitin carboxyl-terminal hydrolase 15 {Human (H | 99.92 | |
| d1t0ya_ | 90 | Ubiquitin-like domain of tubulin folding cofactor | 94.83 | |
| d1euvb_ | 79 | SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy | 94.25 | |
| d1wjna_ | 97 | Tubulin-folding protein TbcE {Mouse (Mus musculus) | 93.83 | |
| d1yqba1 | 84 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 93.29 | |
| d1j8ca_ | 103 | Ubiquitin-like N-terminal domain of PLIC-2 {Human | 92.36 | |
| d1v6ea_ | 95 | Ubiquitin-like domain of tubulin folding cofactor | 92.32 | |
| d2bwfa1 | 73 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 90.81 | |
| d1v86a_ | 95 | hypothetical D7wsu128e protein {Mouse (Mus musculu | 90.54 | |
| d1wxva1 | 81 | Bag-family molecular chaperone regulator-1 {Human | 90.33 | |
| d2uyzb1 | 77 | SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax | 89.99 | |
| d1z2ma2 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 89.83 | |
| d1ogwa_ | 76 | Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | 89.51 | |
| d1wx8a1 | 83 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 88.79 | |
| d1wjua_ | 100 | NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens | 87.76 | |
| d1zkha1 | 86 | Splicing factor 3 subunit 1, C-terminal domain {Hu | 87.48 | |
| d1m94a_ | 73 | Ubiquitin-like modifier protein hub1 {Baker's yeas | 87.18 | |
| d1we6a_ | 111 | Splicing factor 3 subunit 1, C-terminal domain {Th | 87.03 | |
| d1v5oa_ | 102 | 1700011n24rik protein {Mouse (Mus musculus) [TaxId | 86.78 | |
| d1wh3a_ | 87 | 2'-5'-oligoadenylate synthetase-like protein, OASL | 86.73 | |
| d1wy8a1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 86.71 | |
| d1bt0a_ | 73 | Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI | 86.33 | |
| d2zeqa1 | 78 | Ubiquitin-like domain of parkin {Mouse (Mus muscul | 84.71 | |
| d1uh6a_ | 100 | Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu | 84.3 | |
| d2c9wb1 | 103 | Elongin B {Human (Homo sapiens) [TaxId: 9606]} | 83.72 | |
| d1wm3a_ | 72 | SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} | 83.47 | |
| d1ttna1 | 80 | Dendritic cell-derived ubiquitin-like protein {Hum | 83.04 | |
| d2faza1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 82.95 | |
| d1oqya4 | 77 | Ubiquitin-like domain of Rad23 homolog A (Hhr23a) | 81.6 |
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-47 Score=425.74 Aligned_cols=260 Identities=25% Similarity=0.403 Sum_probs=222.7
Q ss_pred CCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCcCccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHH
Q 002810 315 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKG 394 (877)
Q Consensus 315 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~ 394 (877)
+.+|++||.|+||||||||+||||+|+|+|+++++..-.. ......++..+|+.||..|+.+. .++.|..++.
T Consensus 2 ~~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~------~~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~~~~ 74 (347)
T d1nbfa_ 2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE------GDDSSKSVPLALQRVFYELQHSD-KPVGTKKLTK 74 (347)
T ss_dssp CSSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCT------TCCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHH
T ss_pred CCCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCcc------CCcccchHHHHHHHHHHHHhcCC-CCcChHHHHH
Confidence 4689999999999999999999999999999999764111 11223468889999999999854 6788999888
Q ss_pred HHhhhcCCCCCCCcccHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHhHHHHhhccccCCCccccceeEEEEE
Q 002810 395 KLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKS 474 (877)
Q Consensus 395 ~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s 474 (877)
.++. +.|..+.|||||||+.+||+.|++++.... ..++|.++|+|.+.+
T Consensus 75 ~~~~--~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~-----------------------------~~~~i~~lF~g~~~~ 123 (347)
T d1nbfa_ 75 SFGW--ETLDSFMQHDVQELCRVLLDNVENKMKGTC-----------------------------VEGTIPKLFRGKMVS 123 (347)
T ss_dssp HTTC--CGGGGGSCBCHHHHHHHHHHHHHHHHTTST-----------------------------TTTHHHHHHCEEEEE
T ss_pred hhch--hhcchHHHHHHHHHHHHHHHHHHHHHhhcc-----------------------------ccccccceeceEEEE
Confidence 7753 568889999999999999999999974321 246799999999999
Q ss_pred EEEcCCCCCeeeeecCCeeEeecCCCCCceeeEEEEEecCCCCCCeeEEEEecCCCCHHHHHHHHHhHcCCCCCCcEEEE
Q 002810 475 TLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLA 554 (877)
Q Consensus 475 ~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 554 (877)
+++|..|++.+.++|+|+.|+|++|...
T Consensus 124 ~~~C~~C~~~s~~~e~f~~l~L~i~~~~---------------------------------------------------- 151 (347)
T d1nbfa_ 124 YIQCKEVDYRSDRREDYYDIQLSIKGKK---------------------------------------------------- 151 (347)
T ss_dssp EEEESSSCCEEEEEEEESSEEEECTTCC----------------------------------------------------
T ss_pred eEEeCCccceeeeecccccccccccccc----------------------------------------------------
Confidence 9999999999999999999999886321
Q ss_pred EEeCCceeEeccCCcccccccCCCCeEEEEEecCCCCCceEEEEEeecccccccccccCCCceeccccEEEEecCCCCCH
Q 002810 555 EVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSG 634 (877)
Q Consensus 555 e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~v~~i~~~~~~~ 634 (877)
T Consensus 152 -------------------------------------------------------------------------------- 151 (347)
T d1nbfa_ 152 -------------------------------------------------------------------------------- 151 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHccccccccccccccCCCCCCCccccccccccCCCCCcccccccccccccceeeEEEecCCCCCcCCCccC
Q 002810 635 ADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKD 714 (877)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (877)
T Consensus 152 -------------------------------------------------------------------------------- 151 (347)
T d1nbfa_ 152 -------------------------------------------------------------------------------- 151 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcEEEEEeeccccccccCcccccCCccccccccccccccCCCCCHHHHHHHhcCcccCCCCCCccCCCCCccce
Q 002810 715 SILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQ 794 (877)
Q Consensus 715 ~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~n~w~C~~Ck~~~~ 794 (877)
++.+||+.++.+|.|.+++.|.|..| ..+.
T Consensus 152 -------------------------------------------------~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~ 181 (347)
T d1nbfa_ 152 -------------------------------------------------NIFESFVDYVAVEQLDGDNKYDAGEH-GLQE 181 (347)
T ss_dssp -------------------------------------------------BHHHHHHHHTCCEEECGGGCEECSTT-CEEC
T ss_pred -------------------------------------------------chhhhHHhhcchheeccccccccccC-ccee
Confidence 67899999999999999887777765 6778
Q ss_pred eEEEEEeecCCCeEEEEEeceeecC--CcccccceeEeccCCCCCcccccccCCC-CCceEEEEEEEEeeccCCCCcEEE
Q 002810 795 ATKKLDLWMLPDVLVFHLKRFSYSR--YLKNKLDTFVNFPILNLDLSKYMKSKDG-ESYVYDLFAISNHYGGLGGGHYTA 871 (877)
Q Consensus 795 a~K~~~i~~lP~iLiihLKRF~~~~--~~~~Ki~~~V~FPl~~LDls~~v~~~~~-~~~~YdL~AVinH~G~l~gGHYtA 871 (877)
|.|++.|+++|+||+||||||.+.. ..+.|+++.|.|| +.|||++|+..... ....|+|+|||+|.|...+|||+|
T Consensus 182 ~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~ 260 (347)
T d1nbfa_ 182 AEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVV 260 (347)
T ss_dssp EEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEEEETTEEEEEE
T ss_pred ccEEEEEEecCChheEeeeeeeeccccCcccccCceEeee-eeeccccccccccccCccceeeEEEEEecCCCCCCEEEE
Confidence 9999999999999999999999864 4567999999999 69999999986543 457899999999999889999999
Q ss_pred EEEe
Q 002810 872 YAKV 875 (877)
Q Consensus 872 y~k~ 875 (877)
|+|.
T Consensus 261 ~~~~ 264 (347)
T d1nbfa_ 261 YLNP 264 (347)
T ss_dssp EECT
T ss_pred eeec
Confidence 9985
|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1w6va1 d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hydrolase 15 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
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| >d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} | Back information, alignment and structure |
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| >d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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