Citrus Sinensis ID: 002814
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 877 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SIC9 | 918 | Pentatricopeptide repeat- | yes | no | 0.916 | 0.875 | 0.694 | 0.0 | |
| Q9S7Q2 | 862 | Pentatricopeptide repeat- | no | no | 0.773 | 0.786 | 0.259 | 1e-77 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.604 | 0.647 | 0.278 | 2e-68 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.498 | 0.585 | 0.281 | 6e-56 | |
| O64624 | 822 | Pentatricopeptide repeat- | no | no | 0.579 | 0.618 | 0.276 | 9e-54 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.399 | 0.555 | 0.308 | 2e-53 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.578 | 0.666 | 0.287 | 9e-53 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.564 | 0.822 | 0.258 | 8e-52 | |
| Q3ECK2 | 548 | Pentatricopeptide repeat- | no | no | 0.428 | 0.686 | 0.304 | 3e-51 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.561 | 0.794 | 0.263 | 3e-51 |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1175 bits (3040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/836 (69%), Positives = 671/836 (80%), Gaps = 32/836 (3%)
Query: 28 NNHHRQSHHPS--SRPHWTSHKVSLTKPPLSPSPRNAPKPAATSTTVAP----NPKPFHS 81
NNH + +P+ RP+ S SPR + P ++ TVAP P F
Sbjct: 76 NNHRQTRQNPNYNHRPYGASS-----------SPRGSAPPPSSVATVAPAQLSQPPNF-- 122
Query: 82 LSPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIAMSTRHSVVAEEALHHVTAFARDDVS 141
SPL + KS+L+ DFSGRRSTRFVSKMHFGR K M+TRHS AE+AL + F+ DD
Sbjct: 123 -SPLQTPKSDLSSDFSGRRSTRFVSKMHFGRQKTTMATRHSSAAEDALQNAIDFSGDDEM 181
Query: 142 LGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMIS 201
++ FE KLCG+DD T+++RELGNR E KA+ + FAVKRE RKN+QGKLASAMIS
Sbjct: 182 FHSLMLSFESKLCGSDDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMIS 241
Query: 202 ILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKP 261
LGR GKV +AK IFETA GYGNTVYAFSALISAYGRSG +EAISVFNSMK Y L+P
Sbjct: 242 TLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRP 301
Query: 262 NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNL 321
NLVTYNAVIDACGKGG++FK V + FD+M RNGVQPDRITFNSLLAVCSRGGLWEAARNL
Sbjct: 302 NLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNL 361
Query: 322 FNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK 381
F+EM +R I+QD+F+YNTLLDAICKG QMDLAFEI+A+MP K I PNVV+YST+IDG+AK
Sbjct: 362 FDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAK 421
Query: 382 AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVT 441
AGR D+ALN+F EM++LGI LDRVSYNT+LSIY K+GR EEAL + +EM S GI+KD VT
Sbjct: 422 AGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVT 481
Query: 442 YNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFK 501
YNALLGGYGKQGKYDEV+++F +MK + V PNLLTYSTLID YSKGGLYKEAM+IFREFK
Sbjct: 482 YNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFK 541
Query: 502 QAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTE 561
AGL+ADVVLYSALIDALCKNGLV SAVSL+DEMTKEGI PNVVTYNSIIDAFGRSAT +
Sbjct: 542 SAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMD 601
Query: 562 CTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKE-N 620
+ D S+ L A+ + N++I++FGQL E + K+
Sbjct: 602 RSA-DYSNGGSLPFSSSALSALTETE----------GNRVIQLFGQLTTESNNRTTKDCE 650
Query: 621 RCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYG 680
QE+ CIL VF+KMH+L+IKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDN+VYG
Sbjct: 651 EGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYG 710
Query: 681 VAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGK 740
V HGLLMG R+N+W+QA SLFD+V MD STASAFYNALTDMLWHFGQKRGA+LV LEG+
Sbjct: 711 VVHGLLMGQRENVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGR 770
Query: 741 RRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSK 800
RQVWENVWS+SCLDLHLMSSGAARAMVHAWLLNI SIV+EGHELPK+LSILTGWGKHSK
Sbjct: 771 SRQVWENVWSDSCLDLHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVLSILTGWGKHSK 830
Query: 801 VVGDGALRRAVEVLLTGMGAPFWVANCNLGRFISTGPMVASWLRESGTLKVLVLHD 856
VVGDGALRRAVEVLL GM APF ++ CN+GRF S+G +VA+WLRES TLK+L+LHD
Sbjct: 831 VVGDGALRRAVEVLLRGMDAPFHLSKCNMGRFTSSGSVVATWLRESATLKLLILHD 886
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (746), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 192/739 (25%), Positives = 384/739 (51%), Gaps = 61/739 (8%)
Query: 96 FSGRRSTRFVSKMHFGRPKIAMST-RHSVVAEEALHHVTAFARDDVSLGDILKKFEFKLC 154
FSG+ + + G P +++ ++S E ++ +++ S+ L F+ KL
Sbjct: 47 FSGKIKAK-TKDLVLGNPSVSVEKGKYSYDVESLINKLSSLPPRG-SIARCLDIFKNKL- 103
Query: 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKN 214
+D+ + +E RG+W ++++ F + ++R+ + + MIS+LGR G +D
Sbjct: 104 SLNDFALVFKEFAGRGDWQRSLRLFKY-MQRQIWCKPNEHIYTIMISLLGREGLLDKCLE 162
Query: 215 IFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274
+F+ ++G +V++++ALI+AYGR+G + ++ + + MK + P+++TYN VI+AC
Sbjct: 163 VFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACA 222
Query: 275 KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDI 334
+GG+D++ ++ +F +M G+QPD +T+N+LL+ C+ GL + A +F M GI D+
Sbjct: 223 RGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDL 282
Query: 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSE 394
TY+ L++ K +++ +++ EM + P++ +Y+ +++ YAK+G + +A+ +F +
Sbjct: 283 TTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQ 342
Query: 395 MKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454
M+ G + +Y+ +L+++ + GR+++ + EM+SS DA TYN L+ +G+ G
Sbjct: 343 MQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGY 402
Query: 455 YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSA 514
+ EV +F M + + P++ TY +I KGGL+++A +I + + Y+
Sbjct: 403 FKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTG 462
Query: 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSA---TTECTVDD-VERD 570
+I+A + L E A+ + M + G P++ T++S++ +F R +E + V+
Sbjct: 463 VIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSG 522
Query: 571 LGKQKESANLDAMCSQDDKDVQEAGRT-----------DNQIIKV------FGQLVAEKA 613
+ + +++ N + +EA +T D + ++ F +LV E
Sbjct: 523 IPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDE-- 580
Query: 614 GQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRL 673
CR++ F++M I P+++ + +L + ++D + LLEE +
Sbjct: 581 --------CREQ-------FEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEE--M 623
Query: 674 FDNQV---YGVAHGLLMG-YRDNI-WVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQ 728
N+V + V ++ G Y D+ W + D++ FYNAL D LW GQ
Sbjct: 624 LSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQ 683
Query: 729 KRGAQLVVLEGKRRQVWEN-------VWSESCLDLHLMSSGAARAMVHAWLLNIHSIVFE 781
K A V+ E +R ++ VWS +D+H MS G + WL +I+ ++ +
Sbjct: 684 KERAARVLNEATKRGLFPELFRKNKLVWS---VDVHRMSEGGMYTALSVWLNDINDMLLK 740
Query: 782 GHELPKLLSILTGWGKHSK 800
G +LP+L +++ G+ K
Sbjct: 741 G-DLPQLAVVVSVRGQLEK 758
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Involved in plastid gene expression. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 261 bits (667), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 157/564 (27%), Positives = 293/564 (51%), Gaps = 34/564 (6%)
Query: 162 LLRELGNRGEWSKAIQCFAFAVKREERKND-QGKLASAMISILGRLGKVDLAKNIFETAL 220
L+ LG ++ A++ F + +K+++ ++ + + +IS+LG+ G+V A N+F
Sbjct: 141 FLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQ 200
Query: 221 NEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDF 280
+G+ VY++++LISA+ SG +EA++VF M+ KP L+TYN +++ GK G +
Sbjct: 201 EDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPW 260
Query: 281 KHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTL 340
+ + + M +G+ PD T+N+L+ C RG L + A +F EM G D TYN L
Sbjct: 261 NKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNAL 320
Query: 341 LDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGI 400
LD K + A +++ EM SP++VTY+++I YA+ G LD+A+ + ++M G
Sbjct: 321 LDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGT 380
Query: 401 GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRR 460
D +Y T+LS + + G+ E A+ + +EM ++G + + T+NA + YG +GK+ E+ +
Sbjct: 381 KPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMK 440
Query: 461 MFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALC 520
+F+++ +SP+++T++TL+ V+ + G+ E +F+E K+AG + ++ LI A
Sbjct: 441 IFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYS 500
Query: 521 KNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANL 580
+ G E A+++ M G+ P++ TYN+++ A R E + E+ L +
Sbjct: 501 RCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQS----EKVLAE------- 549
Query: 581 DAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLK 640
E GR + L A G +EI + + ++++
Sbjct: 550 -----------MEDGRCKPNELTYCSLLHAYANG---------KEIGLMHSLAEEVYSGV 589
Query: 641 IKPNVVTFSAILNACSRCNSFEDASMLLEEL--RLFDNQVYGVAHGLLMGYRDNIWVQAL 698
I+P V ++ CS+C+ +A EL R F + + + + R + +A
Sbjct: 590 IEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKAN 649
Query: 699 SLFDEVKLMDSSTASAFYNALTDM 722
+ D +K + + A YN+L M
Sbjct: 650 GVLDYMKERGFTPSMATYNSLMYM 673
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (559), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 135/480 (28%), Positives = 246/480 (51%), Gaps = 43/480 (8%)
Query: 219 ALNEGYG---NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK 275
+L E Y +T F ++ +Y R +A+S+ + + + P +++YNAV+DA +
Sbjct: 122 SLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIR 181
Query: 276 GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIF 335
+ +F +ML + V P+ T+N L+ G + A LF++M +G ++
Sbjct: 182 SKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVV 241
Query: 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEM 395
TYNTL+D CK ++D F+++ M K + PN+++Y+ +I+G + GR+ + + +EM
Sbjct: 242 TYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEM 301
Query: 396 KFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKY 455
G LD V+YNT++ Y K G F +AL++ EM G+ +TY +L+ K G
Sbjct: 302 NRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNM 361
Query: 456 DEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSAL 515
+ +QM+ + PN TY+TL+D +S+ G EA ++ RE G VV Y+AL
Sbjct: 362 NRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNAL 421
Query: 516 IDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQK 575
I+ C G +E A+++L++M ++G+ P+VV+Y++++ F RS DV+ L ++
Sbjct: 422 INGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSY-------DVDEALRVKR 474
Query: 576 E-------------SANLDAMCSQDDKDVQEAGRTDNQIIKV--------FGQLVAEKAG 614
E S+ + C Q + +EA ++++V + L+
Sbjct: 475 EMVEKGIKPDTITYSSLIQGFCEQ--RRTKEACDLYEEMLRVGLPPDEFTYTALINAYCM 532
Query: 615 QGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLF 674
+G E L + +M + + P+VVT+S ++N ++ + +A LL L+LF
Sbjct: 533 EGDLEKA--------LQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLL--LKLF 582
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (540), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 146/528 (27%), Positives = 258/528 (48%), Gaps = 20/528 (3%)
Query: 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREER---KNDQGKLASAMISILGRLGKVDLAKN 214
D L++ L + G W +A+ F + V K D ++ + ILGR + +A
Sbjct: 138 DLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDH-QVIEIFVRILGRESQYSVAAK 196
Query: 215 IFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274
+ + + Y V A++ ++ AY R+G ++AI +F MK P LVTYN ++D G
Sbjct: 197 LLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFG 256
Query: 275 KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDI 334
K G ++ ++ + D+M G++ D T +++L+ C+R GL A+ F E+ G +
Sbjct: 257 KMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGT 316
Query: 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSE 394
TYN LL K A ++ EM + + VTY+ ++ Y +AG +A +
Sbjct: 317 VTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEM 376
Query: 395 MKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454
M G+ + ++Y TV+ Y K G+ +EAL + M+ +G + TYNA+L GK+ +
Sbjct: 377 MTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSR 436
Query: 455 YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSA 514
+E+ +M MK++ SPN T++T++ + G+ K ++FRE K G + D ++
Sbjct: 437 SNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNT 496
Query: 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSA---TTECTVDDVERDL 571
LI A + G A + EMT+ G V TYN++++A R + E + D++
Sbjct: 497 LISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKG 556
Query: 572 GKQKESA-NLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGK---KENRCRQEIL 627
K E++ +L C + R +N+I + GQ+ +CR
Sbjct: 557 FKPTETSYSLMLQCYAKGGNYLGIERIENRIKE--GQIFPSWMLLRTLLLANFKCR---- 610
Query: 628 CILG---VFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELR 672
+ G F K KP++V F+++L+ +R N ++ A +LE +R
Sbjct: 611 ALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIR 658
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/357 (30%), Positives = 203/357 (56%), Gaps = 7/357 (1%)
Query: 208 KVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYN 267
K A + + + +G + + +++ + G A ++ N M++ L+P ++ YN
Sbjct: 201 KASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYN 260
Query: 268 AVIDACGKGGVDFKHV---VEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNE 324
+ID K +KH+ + +F +M G++P+ +T++SL++ G W A L ++
Sbjct: 261 TIIDGLCK----YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSD 316
Query: 325 MVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR 384
M+ R I+ D+FT++ L+DA K ++ A ++ EM ++I P++VTYS++I+G+ R
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376
Query: 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA 444
LD+A MF M D V+YNT++ + K R EE + V +EM G+ + VTYN
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 436
Query: 445 LLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504
L+ G + G D + +F++M +D V PN++TY+TL+D K G ++AM +F +++
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496
Query: 505 LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTE 561
++ + Y+ +I+ +CK G VE L ++ +G++P+VV YN++I F R + E
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKE 553
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 148/515 (28%), Positives = 251/515 (48%), Gaps = 8/515 (1%)
Query: 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALN 221
L L + G +AIQCF+ +KR R + + + ++ +LGK D K F+ +
Sbjct: 198 LFSVLIDLGMLEEAIQCFS-KMKRF-RVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIG 255
Query: 222 EGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK 281
G TV+ ++ +I + G + A +F MK L P+ VTYN++ID GK G
Sbjct: 256 AGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVG-RLD 314
Query: 282 HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLL 341
V F++M +PD IT+N+L+ + G + EM G+ ++ +Y+TL+
Sbjct: 315 DTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLV 374
Query: 342 DAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIG 401
DA CK M A + +M + PN TY+++ID K G L DA + +EM +G+
Sbjct: 375 DAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVE 434
Query: 402 LDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRM 461
+ V+Y ++ R +EA + +M+++G+ + +YNAL+ G+ K D +
Sbjct: 435 WNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALEL 494
Query: 462 FEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK 521
++K + P+LL Y T I + A + E K+ G+KA+ ++Y+ L+DA K
Sbjct: 495 LNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFK 554
Query: 522 NGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVER---DLGKQKESA 578
+G + LLDEM + I VVT+ +ID ++ VD R D G Q +A
Sbjct: 555 SGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAA 614
Query: 579 NLDAMCSQDDKDVQ-EAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQ-EILCILGVFQKM 636
AM KD Q EA T + + G + A + +Q +L L + KM
Sbjct: 615 IFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKM 674
Query: 637 HKLKIKPNVVTFSAILNACSRCNSFEDASMLLEEL 671
++ +K +++ +++++ S CN + A LEE+
Sbjct: 675 AEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 709
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (523), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 137/529 (25%), Positives = 250/529 (47%), Gaps = 34/529 (6%)
Query: 197 SAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKR 256
S S + R + +L + + G + +Y + +I+ + R A SV + +
Sbjct: 92 SRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMK 151
Query: 257 YNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316
+P+ T+N +I G V + D M+ NG QPD +T+NS++ R G
Sbjct: 152 LGYEPDTTTFNTLIKGLFLEG-KVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTS 210
Query: 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376
A +L +M R + D+FTY+T++D++C+ +D A + EM K I +VVTY++++
Sbjct: 211 LALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLV 270
Query: 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIR 436
G KAG+ +D + +M I + +++N +L ++ K G+ +EA + KEM + GI
Sbjct: 271 RGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGIS 330
Query: 437 KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQI 496
+ +TYN L+ GY Q + E M + M + SP+++T+++LI Y + M++
Sbjct: 331 PNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKV 390
Query: 497 FREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556
FR + GL A+ V YS L+ C++G ++ A L EM G+ P+V+TY ++D
Sbjct: 391 FRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCD 450
Query: 557 SATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQG 616
+ E ++ E DL K K I ++ ++ G
Sbjct: 451 NGKLEKALEIFE-DLQKSKMDLG----------------------IVMYTTIIEGMCKGG 487
Query: 617 KKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDN 676
K E+ +F + +KPNV+T++ +++ + S +A++LL ++ N
Sbjct: 488 KVEDA--------WNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGN 539
Query: 677 QVYGVAHGLLMG--YRDNIWVQALSLFDEVKLMDSSTASAFYNALTDML 723
+ L+ RD + L +E+K S ++ + DML
Sbjct: 540 APNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 588
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 208/387 (53%), Gaps = 11/387 (2%)
Query: 208 KVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYN 267
+V LA +I L GY +L++ + R +A+S+ + M KP++V YN
Sbjct: 135 QVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYN 194
Query: 268 AVIDACGKGGVDFKHVVEIFD---DMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNE 324
A+ID+ K K V + FD ++ R G++P+ +T+ +L+ W A L ++
Sbjct: 195 AIIDSLCKT----KRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSD 250
Query: 325 MVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR 384
M+ + I ++ TY+ LLDA K ++ A E+ EM +I P++VTYS++I+G R
Sbjct: 251 MIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 310
Query: 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA 444
+D+A MF M G D VSYNT+++ + K R E+ + + +EM G+ + VTYN
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 370
Query: 445 LLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504
L+ G+ + G D+ + F QM +SP++ TY+ L+ G ++A+ IF + ++
Sbjct: 371 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 430
Query: 505 LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTV 564
+ D+V Y+ +I +CK G VE A SL ++ +G++P++VTY +++ T+ +
Sbjct: 431 MDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL----CTKGLL 486
Query: 565 DDVERDLGKQKESANLDAMCSQDDKDV 591
+VE K K+ + C+ D D+
Sbjct: 487 HEVEALYTKMKQEGLMKNDCTLSDGDI 513
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (518), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 140/532 (26%), Positives = 249/532 (46%), Gaps = 40/532 (7%)
Query: 197 SAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKR 256
+ MI+ R K+ A ++ A GY FS L++ + G EA+++ + M
Sbjct: 109 TIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVE 168
Query: 257 YNLKPNLVTYNAVIDA-CGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315
+P+LVT + +I+ C KG V + + D M+ G QPD +T+ +L + G
Sbjct: 169 MKQRPDLVTVSTLINGLCLKGRV--SEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNS 226
Query: 316 EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTM 375
A +LF +M R I + Y+ ++D++CK D A + EM K I +VVTYS++
Sbjct: 227 ALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSL 286
Query: 376 IDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI 435
I G G+ DD M EM I D V+++ ++ ++ K G+ EA + EM + GI
Sbjct: 287 IGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGI 346
Query: 436 RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQ 495
D +TYN+L+ G+ K+ E +MF+ M + P+++TYS LI+ Y K + M+
Sbjct: 347 APDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMR 406
Query: 496 IFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFG 555
+FRE GL + + Y+ L+ C++G + +A L EM G+ P+VVTY ++D
Sbjct: 407 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 466
Query: 556 RSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQ 615
+ ++ E+ QK L I ++ ++
Sbjct: 467 DNGELNKALEIFEK---MQKSRMTLG--------------------IGIYNIIIHGMCNA 503
Query: 616 GKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELR--- 672
K ++ +F + +KP+VVT++ ++ + S +A ML +++
Sbjct: 504 SKVDDA--------WSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG 555
Query: 673 -LFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDML 723
D+ Y + +G + + ++ L +E+K+ S S+ + DML
Sbjct: 556 CTPDDFTYNILIRAHLG--GSGLISSVELIEEMKVCGFSADSSTIKMVIDML 605
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 877 | ||||||
| 225437600 | 867 | PREDICTED: pentatricopeptide repeat-cont | 0.986 | 0.997 | 0.780 | 0.0 | |
| 255548407 | 878 | pentatricopeptide repeat-containing prot | 0.971 | 0.970 | 0.790 | 0.0 | |
| 449436409 | 868 | PREDICTED: pentatricopeptide repeat-cont | 0.989 | 1.0 | 0.740 | 0.0 | |
| 449518511 | 868 | PREDICTED: pentatricopeptide repeat-cont | 0.989 | 1.0 | 0.740 | 0.0 | |
| 297826581 | 917 | pentatricopeptide repeat-containing prot | 0.915 | 0.875 | 0.694 | 0.0 | |
| 15224671 | 918 | genomes uncoupled 1 protein [Arabidopsis | 0.916 | 0.875 | 0.694 | 0.0 | |
| 224064580 | 718 | predicted protein [Populus trichocarpa] | 0.809 | 0.988 | 0.783 | 0.0 | |
| 297743996 | 730 | unnamed protein product [Vitis vinifera] | 0.657 | 0.790 | 0.758 | 0.0 | |
| 357502615 | 849 | Pentatricopeptide repeat-containing prot | 0.954 | 0.985 | 0.535 | 0.0 | |
| 357502623 | 890 | Pentatricopeptide repeat-containing prot | 0.973 | 0.959 | 0.509 | 0.0 |
| >gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1407 bits (3641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 686/879 (78%), Positives = 754/879 (85%), Gaps = 14/879 (1%)
Query: 1 MAS-TPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSP 59
MAS TPPHCSITA KPYQN YP N KN+H+ W+SHKVSLT P PSP
Sbjct: 1 MASPTPPHCSITAAKPYQNLHYPQNPTKNHHNNHH--------WSSHKVSLTNP--LPSP 50
Query: 60 RNAPKPAATSTTVAPNPKP-FHSLSPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIAMS 118
RNA KP A S A N F SLSPLP SKSEL DFSGRRSTRFVSKMHFGRPK A +
Sbjct: 51 RNAAKPGAASPATATNRNSNFPSLSPLPPSKSELTADFSGRRSTRFVSKMHFGRPKTAAA 110
Query: 119 TRHSVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQC 178
RH+ AEEAL H FA DD + +L FE +LCG+DDYTFLLRELGNRGEW+KAI+C
Sbjct: 111 ARHTSTAEEALRHAIRFASDDKGIDSVLLNFESRLCGSDDYTFLLRELGNRGEWAKAIRC 170
Query: 179 FAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238
F FAV+RE+R+N+QGKLASAMISILGRLG+V+LAKN+FETALNEGYGNTVYAFSALISAY
Sbjct: 171 FEFAVRREQRRNEQGKLASAMISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAY 230
Query: 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD 298
GRSGYC EAI VF +MK LKPNLVTYNAVIDACGKGGVDF EIFD+MLRNGVQPD
Sbjct: 231 GRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPD 290
Query: 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMA 358
RITFNSLLAVC RGGLWEAARNLF+EM++RGI+QDIFTYNTLLDA+CKG QMDLAF+IM+
Sbjct: 291 RITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMS 350
Query: 359 EMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLG 418
EMP K+I PNVVTYST+IDGYAKAGRLD+ALN+F+EMKF IGLDRVSYNT+LSIYAKLG
Sbjct: 351 EMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLG 410
Query: 419 RFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYS 478
RFEEAL VCKEMESSGI+KDAVTYNALLGGYGKQGKY+EV+R+FE+MKA+ + PNLLTYS
Sbjct: 411 RFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYS 470
Query: 479 TLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538
TLIDVYSKGGLY+EAM++FREFK+AGLKADVVLYSALIDALCKNGLVESAVS LDEMTKE
Sbjct: 471 TLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKE 530
Query: 539 GIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTD 598
GIRPNVVTYNSIIDAFGRS + EC +D + S++L + +D + + + D
Sbjct: 531 GIRPNVVTYNSIIDAFGRSGSAECVIDPPYETNVSKMSSSSLKVV--EDATESEVGDKED 588
Query: 599 NQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRC 658
NQIIK+FGQL AEK KKENR RQEILCIL VF KMH+L IKPNVVTFSAILNACSRC
Sbjct: 589 NQIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKMHELDIKPNVVTFSAILNACSRC 648
Query: 659 NSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNA 718
NSFEDASMLLEELRLFDNQVYGVAHGLLMGY DN+WVQA SLFDEVK MDSSTASAFYNA
Sbjct: 649 NSFEDASMLLEELRLFDNQVYGVAHGLLMGYGDNVWVQAQSLFDEVKQMDSSTASAFYNA 708
Query: 719 LTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIHSI 778
LTDMLWHFGQ+RGAQLVVLEGKRR VWEN+WS SCLDLHLMSSGAARAMVHAWLLNI SI
Sbjct: 709 LTDMLWHFGQRRGAQLVVLEGKRRHVWENMWSNSCLDLHLMSSGAARAMVHAWLLNIRSI 768
Query: 779 VFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAPFWVANCNLGRFISTGPM 838
VFEGHELP+LLSILTGWGKHSKVVGDGALRRA+E LLTGMGAPF VA CNLGRFISTG +
Sbjct: 769 VFEGHELPQLLSILTGWGKHSKVVGDGALRRAIEALLTGMGAPFRVAKCNLGRFISTGAV 828
Query: 839 VASWLRESGTLKVLVLHDDRTHSENAGFDEMLNMQTLTL 877
VA+WLRESGTLKVLVLHDDRT+ + A ++ N+QTL L
Sbjct: 829 VAAWLRESGTLKVLVLHDDRTNPDRARCSQISNLQTLPL 867
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1405 bits (3636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 685/867 (79%), Positives = 754/867 (86%), Gaps = 15/867 (1%)
Query: 1 MASTPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSPR 60
MASTPPHCSITATKPYQNHQYP NHLKN HRQ+HH WT+ KVSLTKPPL+PSP
Sbjct: 1 MASTPPHCSITATKPYQNHQYPQNHLKN--HRQTHHH----RWTNQKVSLTKPPLAPSPC 54
Query: 61 NAPKPAATSTTVAPNPKP----FHSLSPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIA 116
NAPK AA + FHSLSPL S KS+L+ DFSGRRSTRFVSK+HFGRPK
Sbjct: 55 NAPKAAAAAAAATTTHHTPNPTFHSLSPLQSQKSDLSADFSGRRSTRFVSKLHFGRPKTN 114
Query: 117 MSTRHSVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAI 176
M+ RH+ VA EAL V + +DD +L ++L FE +LCG DDYTFLLRELGNRG+ +KA+
Sbjct: 115 MN-RHTSVALEALQQVIQYGKDDKALENVLLNFESRLCGPDDYTFLLRELGNRGDSAKAV 173
Query: 177 QCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236
+CF FAV+RE KN+QGKLASAMIS LGRLGKV+LAK +F+TAL EGYG TVYAFSALIS
Sbjct: 174 RCFEFAVRRESGKNEQGKLASAMISTLGRLGKVELAKAVFDTALKEGYGKTVYAFSALIS 233
Query: 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ 296
AYGRSGYC EAI VF+SMK L PNLVTYNAVIDACGKGGV+FK VVEIFD ML NGVQ
Sbjct: 234 AYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQ 293
Query: 297 PDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEI 356
PDRITFNSLLAVCSRGGLWEAAR LF+ MV +GIDQDIFTYNTLLDA+CKG QMDLAFEI
Sbjct: 294 PDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEI 353
Query: 357 MAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK 416
M+EMP KNI PNVVTYSTMIDGYAK GRLDDALNMF+EMKFLG+GLDRVSYNT+LS+YAK
Sbjct: 354 MSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAK 413
Query: 417 LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLT 476
LGRFE+AL VCKEME++GIRKD VTYNALL GYGKQ +YDEVRR+FE+MK VSPNLLT
Sbjct: 414 LGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLT 473
Query: 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536
YSTLIDVYSKGGLYKEAM++FREFKQAGLKADVVLYSALIDALCKNGLVES+V+LLDEMT
Sbjct: 474 YSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSVTLLDEMT 533
Query: 537 KEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGR 596
KEGIRPNVVTYNSIIDAFGRSA+ +C VDD Q ES L ++ Q+ + Q A +
Sbjct: 534 KEGIRPNVVTYNSIIDAFGRSASAQCVVDDSGETTALQVES--LSSIVVQEAIESQAADK 591
Query: 597 TDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACS 656
DN+II++FG+L AEKA + K N +QEILCILGVFQKMH+LKIKPNVVTFSAILNACS
Sbjct: 592 EDNRIIEIFGKLAAEKACEAK--NSGKQEILCILGVFQKMHELKIKPNVVTFSAILNACS 649
Query: 657 RCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFY 716
RC+SFEDASMLLEELRLFDNQVYGVAHGLLMGYR+N+W+QA SLFDEVKLMDSSTASAFY
Sbjct: 650 RCDSFEDASMLLEELRLFDNQVYGVAHGLLMGYRENVWLQAQSLFDEVKLMDSSTASAFY 709
Query: 717 NALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIH 776
NALTDMLWHFGQKRGAQLVVLEGKRRQVWEN+WS+SCLDLHLMSSGAARAMVHAWLLNI
Sbjct: 710 NALTDMLWHFGQKRGAQLVVLEGKRRQVWENIWSDSCLDLHLMSSGAARAMVHAWLLNIR 769
Query: 777 SIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAPFWVANCNLGRFISTG 836
SIVFEGHELPKLLSILTGWGKHSKVVGD ALRRAVE LL GMGAPF +A CNLGRFISTG
Sbjct: 770 SIVFEGHELPKLLSILTGWGKHSKVVGDSALRRAVEALLIGMGAPFRLAKCNLGRFISTG 829
Query: 837 PMVASWLRESGTLKVLVLHDDRTHSEN 863
+VA+WL+ESGTL+VLVLHDDRTH EN
Sbjct: 830 SVVAAWLKESGTLEVLVLHDDRTHPEN 856
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1334 bits (3453), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/877 (74%), Positives = 738/877 (84%), Gaps = 9/877 (1%)
Query: 1 MASTPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSPR 60
MASTPPHCSITA KPYQ HQYP N+LKN HRQ+ + P T+HK L KP S
Sbjct: 1 MASTPPHCSITAAKPYQTHQYPQNNLKN--HRQNARQNG-PWTTTHKFPLVKPLPSTPGH 57
Query: 61 NAPKPAATSTTVAPNPKPFHSLSPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIAMSTR 120
+A K +T + +PN F SL LP+SKSELA +FSGRRSTRFVSK HFGRPK +M+TR
Sbjct: 58 SATKSTSTPLSQSPN---FPSLCSLPTSKSELASNFSGRRSTRFVSKFHFGRPKSSMTTR 114
Query: 121 HSVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFA 180
HS +AEE LH V F +DD SL +IL FE KLCG++DYTFLLRELGNRGE KAI+CF
Sbjct: 115 HSAIAEEVLHQVLQFGKDDASLDNILLNFESKLCGSEDYTFLLRELGNRGECWKAIRCFD 174
Query: 181 FAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240
FA+ RE RKN++GKLASAMIS LGRLGKV+LAK +FETAL+EGYGNTV+AFSALISAYG+
Sbjct: 175 FALVREGRKNERGKLASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGK 234
Query: 241 SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRI 300
SGY EAI VF SMK LKPNLVTYNAVIDACGKGGV+FK VVEIF++MLRNGVQPDRI
Sbjct: 235 SGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRI 294
Query: 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEM 360
T+NSLLAVCSRGGLWEAARNLFNEM+ RGIDQD+FTYNTLLDA+CKG QMDLA+EIM EM
Sbjct: 295 TYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEM 354
Query: 361 PAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420
P K I PNVVTYSTM DGYAKAGRL+DALN+++EMKFLGIGLDRVSYNT+LSIYAKLGRF
Sbjct: 355 PGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRF 414
Query: 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTL 480
E+AL VCKEM SSG++KD VTYNALL GYGKQGK++EV R+F++MK D V PNLLTYSTL
Sbjct: 415 EDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTL 474
Query: 481 IDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGI 540
IDVYSKG LY+EAM++FREFKQAGLKADVVLYS LI+ALCKNGLV+SAV LLDEMTKEGI
Sbjct: 475 IDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGI 534
Query: 541 RPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQ 600
RPNVVTYNSIIDAFGRS T E VD V +Q ES + + D+ ++ D
Sbjct: 535 RPNVVTYNSIIDAFGRSTTAEFLVDGVGASNERQSESPSFMLIEGVDESEIN---WDDGH 591
Query: 601 IIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNS 660
+ K + QLV+EK G KKE ++EI IL VF+KMH+L+IKPNVVTFSAILNACSRC S
Sbjct: 592 VFKFYQQLVSEKEGPAKKERLGKEEIRSILSVFKKMHELEIKPNVVTFSAILNACSRCKS 651
Query: 661 FEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALT 720
EDASMLLEELRLFDNQVYGVAHGLLMG+ +N+W+QA LFDEVK MDSSTASAFYNALT
Sbjct: 652 IEDASMLLEELRLFDNQVYGVAHGLLMGFSENVWIQAQYLFDEVKQMDSSTASAFYNALT 711
Query: 721 DMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIHSIVF 780
DMLWHFGQKRGAQLVVLEGKRR+VWE +WS+SCLDLHLMSSGAARAMVHAWLL IHS+VF
Sbjct: 712 DMLWHFGQKRGAQLVVLEGKRRKVWETLWSDSCLDLHLMSSGAARAMVHAWLLGIHSVVF 771
Query: 781 EGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAPFWVANCNLGRFISTGPMVA 840
EGH+LPKLLSILTGWGKHSKVVGDGALRRA+E LLT MGAPF VA CN+GR++STG +VA
Sbjct: 772 EGHQLPKLLSILTGWGKHSKVVGDGALRRAIEALLTSMGAPFRVAKCNIGRYVSTGSVVA 831
Query: 841 SWLRESGTLKVLVLHDDRTHSENAGFDEMLNMQTLTL 877
+WL+ESGTLK+LVLHDDRTH ++ D + +QT++L
Sbjct: 832 AWLKESGTLKLLVLHDDRTHPDSENMDLISKLQTISL 868
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1333 bits (3451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/877 (74%), Positives = 736/877 (83%), Gaps = 9/877 (1%)
Query: 1 MASTPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSPR 60
MASTPPHCSITA KPYQ HQYP N+LKN HRQ+ + P T+HK L KP S
Sbjct: 1 MASTPPHCSITAAKPYQTHQYPQNNLKN--HRQNARQNG-PWTTTHKFPLVKPLPSTPGH 57
Query: 61 NAPKPAATSTTVAPNPKPFHSLSPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIAMSTR 120
+A K +T + +PN F SL LP+SKSELA +FSGRRSTRFVSK HFGRPK +M+TR
Sbjct: 58 SATKSTSTPLSQSPN---FPSLCSLPTSKSELASNFSGRRSTRFVSKFHFGRPKSSMTTR 114
Query: 121 HSVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFA 180
HS +AEE LH V F +DD SL +IL FE KLCG++DYTFLLRELGNRGE KAI+CF
Sbjct: 115 HSAIAEEVLHQVLQFGKDDASLDNILLNFESKLCGSEDYTFLLRELGNRGECWKAIRCFD 174
Query: 181 FAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240
FA+ RE RKN++GKLASAMIS LGRLGKV+LAK +FETAL+EGYGNTV+AFSALISAYG+
Sbjct: 175 FALVREGRKNERGKLASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGK 234
Query: 241 SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRI 300
SGY EAI VF SMK LKPNLVTYNAVIDACGKGGV+FK VVEIF++MLRNGVQPDRI
Sbjct: 235 SGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRI 294
Query: 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEM 360
T+NSLLAVCSRGGLWEAARNLFNEM+ RGIDQD+FTYNTLLDA+CKG QMDLA+EIM EM
Sbjct: 295 TYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEM 354
Query: 361 PAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420
P K I PNVVTYSTM DGYAKAGRL+DALN+++EMKFLGIGLDRVSYNT+LSIYAKLGRF
Sbjct: 355 PGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRF 414
Query: 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTL 480
E+AL VCKEM SSG++KD VTYNALL GYGKQGK++EV R+F++MK D V PNLLTYSTL
Sbjct: 415 EDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTL 474
Query: 481 IDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGI 540
IDVYSKG LY+EAM++FREFKQAGLKADVVLYS LI+ALCKNGLV+SAV LLDEMTKEGI
Sbjct: 475 IDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGI 534
Query: 541 RPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQ 600
RPNVVTYNSIIDAFGRS T E VD V +Q ES + D+ ++ D
Sbjct: 535 RPNVVTYNSIIDAFGRSTTAEFLVDGVGASNERQSESPTFMLIEGVDESEIN---WDDGH 591
Query: 601 IIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNS 660
+ K + QLV+EK G KKE ++EI IL VF+KMH+L+IKPNVVTFSAILNACSRC S
Sbjct: 592 VFKFYQQLVSEKEGPAKKERLGKEEIRSILSVFKKMHELEIKPNVVTFSAILNACSRCKS 651
Query: 661 FEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALT 720
EDASMLLEELRLFDNQVYGVAHGLLMG+ +N+W+QA LFDEVK MDSSTASAFYNALT
Sbjct: 652 IEDASMLLEELRLFDNQVYGVAHGLLMGFSENVWIQAQYLFDEVKQMDSSTASAFYNALT 711
Query: 721 DMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIHSIVF 780
DMLWHFGQKRGAQLVVLEGKRR+VWE +WS+SCLDLHLMSSGAARAMVHAWLL IHS+VF
Sbjct: 712 DMLWHFGQKRGAQLVVLEGKRRKVWETLWSDSCLDLHLMSSGAARAMVHAWLLGIHSVVF 771
Query: 781 EGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAPFWVANCNLGRFISTGPMVA 840
EGH+LPKLLSILTGWGKHSKVVGDGALRRA+E LLT MGAPF VA CN+GR++STG +VA
Sbjct: 772 EGHQLPKLLSILTGWGKHSKVVGDGALRRAIEALLTSMGAPFRVAKCNIGRYVSTGSVVA 831
Query: 841 SWLRESGTLKVLVLHDDRTHSENAGFDEMLNMQTLTL 877
+WL+ESGTLK+LVLHDDRTH + D + +QT++L
Sbjct: 832 AWLKESGTLKLLVLHDDRTHPDTENMDLISKLQTISL 868
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1181 bits (3054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/837 (69%), Positives = 677/837 (80%), Gaps = 34/837 (4%)
Query: 28 NNHHRQSHHPS--SRPHWTSHKVSLTKPPLSPSPRNAPKPAATSTTVAP---NPKPFHSL 82
NNH + +P+ RP+ +S SPR + P ++ TVAP + P +
Sbjct: 76 NNHRQTRQNPNYNHRPY-----------GVSSSPRGSAPPPSSVATVAPAQLSQTP--NF 122
Query: 83 SPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIAMSTRHSVVAEEALHHVTAFARDDVSL 142
SPL + KS+L+ DFSGRRSTRFVSKMHFGRPK M+TRHS AE+AL + F+ DD
Sbjct: 123 SPLQTPKSDLSSDFSGRRSTRFVSKMHFGRPKTTMATRHSSAAEDALQNAIDFSGDDEMF 182
Query: 143 GDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISI 202
++ FE KLCG+DD T+++RELGNRGE KA+ + FAVKRE RKN+QGKLASAMIS
Sbjct: 183 HSLMLSFESKLCGSDDCTYIIRELGNRGECDKAVGFYEFAVKRERRKNEQGKLASAMIST 242
Query: 203 LGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN 262
LGR GKV +AK IFETA + GYGNTVYAFSALISAYGRSG +EAISVFNSMK Y L+PN
Sbjct: 243 LGRYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPN 302
Query: 263 LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLF 322
LVTYNAVIDACGKGG++FK V + FD+M RN VQPDRITFNSLLAVCSRGGLWEAARNLF
Sbjct: 303 LVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLF 362
Query: 323 NEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA 382
+EM +R I+QD+F+YNTLLDAICKG QMDLAFEI+A+MPAK I PNVV+YST+IDG+AKA
Sbjct: 363 DEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKA 422
Query: 383 GRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTY 442
GR D+ALN+F EM++L I LDRVSYNT+LSIY K+GR EEAL + +EM S GI+KD VTY
Sbjct: 423 GRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTY 482
Query: 443 NALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502
NALLGGYGKQGKYDEV+++F +MK + V PNLLTYSTLID YSKGGLYKEAM++FREFK
Sbjct: 483 NALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKS 542
Query: 503 AGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTEC 562
AGL+ADVVLYSALIDALCKNGLV SAVSL+DEMTKEGI PNVVTYNSIIDAFGRSAT E
Sbjct: 543 AGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMER 602
Query: 563 TVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRC 622
+ D +L S + + G N++I++FGQL +E G + C
Sbjct: 603 SAD--------YSNGGSLPFSSSALSELTETEG---NRVIQLFGQLTSE--GNNRMTKDC 649
Query: 623 R---QEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVY 679
+ QE+ CIL VF+KMH+L+IKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDN+VY
Sbjct: 650 KEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVY 709
Query: 680 GVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEG 739
GV HGLLMG R+N+W+QA SLFD+V MD STASAFYNALTDMLWHFGQKRGA+LV LEG
Sbjct: 710 GVVHGLLMGQRENVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEG 769
Query: 740 KRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHS 799
+ RQVWENVWS+SCLDLHLMSSGAARAMVHAWLLNI SIV+EGHELPK+LSILTGWGKHS
Sbjct: 770 RSRQVWENVWSDSCLDLHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVLSILTGWGKHS 829
Query: 800 KVVGDGALRRAVEVLLTGMGAPFWVANCNLGRFISTGPMVASWLRESGTLKVLVLHD 856
KVVGDGAL+RAVEVLL GM APF ++ CN+GRF S+G +VA+WLRES TLK+L+LHD
Sbjct: 830 KVVGDGALKRAVEVLLRGMDAPFHLSKCNMGRFTSSGSVVATWLRESATLKLLILHD 886
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana] gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g31400, chloroplastic; Flags: Precursor gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana] gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1175 bits (3040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/836 (69%), Positives = 671/836 (80%), Gaps = 32/836 (3%)
Query: 28 NNHHRQSHHPS--SRPHWTSHKVSLTKPPLSPSPRNAPKPAATSTTVAP----NPKPFHS 81
NNH + +P+ RP+ S SPR + P ++ TVAP P F
Sbjct: 76 NNHRQTRQNPNYNHRPYGASS-----------SPRGSAPPPSSVATVAPAQLSQPPNF-- 122
Query: 82 LSPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIAMSTRHSVVAEEALHHVTAFARDDVS 141
SPL + KS+L+ DFSGRRSTRFVSKMHFGR K M+TRHS AE+AL + F+ DD
Sbjct: 123 -SPLQTPKSDLSSDFSGRRSTRFVSKMHFGRQKTTMATRHSSAAEDALQNAIDFSGDDEM 181
Query: 142 LGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMIS 201
++ FE KLCG+DD T+++RELGNR E KA+ + FAVKRE RKN+QGKLASAMIS
Sbjct: 182 FHSLMLSFESKLCGSDDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMIS 241
Query: 202 ILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKP 261
LGR GKV +AK IFETA GYGNTVYAFSALISAYGRSG +EAISVFNSMK Y L+P
Sbjct: 242 TLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRP 301
Query: 262 NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNL 321
NLVTYNAVIDACGKGG++FK V + FD+M RNGVQPDRITFNSLLAVCSRGGLWEAARNL
Sbjct: 302 NLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNL 361
Query: 322 FNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK 381
F+EM +R I+QD+F+YNTLLDAICKG QMDLAFEI+A+MP K I PNVV+YST+IDG+AK
Sbjct: 362 FDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAK 421
Query: 382 AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVT 441
AGR D+ALN+F EM++LGI LDRVSYNT+LSIY K+GR EEAL + +EM S GI+KD VT
Sbjct: 422 AGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVT 481
Query: 442 YNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFK 501
YNALLGGYGKQGKYDEV+++F +MK + V PNLLTYSTLID YSKGGLYKEAM+IFREFK
Sbjct: 482 YNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFK 541
Query: 502 QAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTE 561
AGL+ADVVLYSALIDALCKNGLV SAVSL+DEMTKEGI PNVVTYNSIIDAFGRSAT +
Sbjct: 542 SAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMD 601
Query: 562 CTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKE-N 620
+ D S+ L A+ + N++I++FGQL E + K+
Sbjct: 602 RSA-DYSNGGSLPFSSSALSALTETE----------GNRVIQLFGQLTTESNNRTTKDCE 650
Query: 621 RCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYG 680
QE+ CIL VF+KMH+L+IKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDN+VYG
Sbjct: 651 EGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYG 710
Query: 681 VAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGK 740
V HGLLMG R+N+W+QA SLFD+V MD STASAFYNALTDMLWHFGQKRGA+LV LEG+
Sbjct: 711 VVHGLLMGQRENVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGR 770
Query: 741 RRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSK 800
RQVWENVWS+SCLDLHLMSSGAARAMVHAWLLNI SIV+EGHELPK+LSILTGWGKHSK
Sbjct: 771 SRQVWENVWSDSCLDLHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVLSILTGWGKHSK 830
Query: 801 VVGDGALRRAVEVLLTGMGAPFWVANCNLGRFISTGPMVASWLRESGTLKVLVLHD 856
VVGDGALRRAVEVLL GM APF ++ CN+GRF S+G +VA+WLRES TLK+L+LHD
Sbjct: 831 VVGDGALRRAVEVLLRGMDAPFHLSKCNMGRFTSSGSVVATWLRESATLKLLILHD 886
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa] gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1170 bits (3028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/729 (78%), Positives = 632/729 (86%), Gaps = 19/729 (2%)
Query: 117 MSTRHSVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAI 176
M TRH+ VA+EAL +V + +D+ +L ++L FE +L G+DDY FLLRELGNRG+ KAI
Sbjct: 1 MGTRHTSVAQEALQNVIEYGKDERALENVLLNFESRLSGSDDYVFLLRELGNRGDCKKAI 60
Query: 177 QCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236
CF FAVKRE +KN+QGKLASAMIS LGRLGKV++AK +F+ AL EGYGNTVYAFSA+IS
Sbjct: 61 CCFEFAVKRERKKNEQGKLASAMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIIS 120
Query: 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ 296
AYGRSGYC EAI +F SMK Y LKPNLVTYNAVIDACGKGGV+FK V+EIFD+MLRNG+Q
Sbjct: 121 AYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQ 180
Query: 297 PDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEI 356
PDRITFNSLLAVCS+GGLWEAAR+L EMV+RGIDQDIFTYNTLLDA+CKG Q+D+AFEI
Sbjct: 181 PDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEI 240
Query: 357 MAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK 416
M+EMPAKNI PNVVTYSTMIDGYAKAGRLDDA N+F+EMKFLGI LDRVSYNT+LSIYAK
Sbjct: 241 MSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAK 300
Query: 417 LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLT 476
LGRFEEA+ VC+EME+SGIRKD VTYNALLGGYGKQ KYD VR++FE+MKA VSPNLLT
Sbjct: 301 LGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLT 360
Query: 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536
YSTLIDVYSKGGLY+EAM +FREFK+AGLKADVVLYSALIDALCKNGLVESAVSLLDEMT
Sbjct: 361 YSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 420
Query: 537 KEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQE--- 593
KEGIRPNVVTYNSIIDAFGR ATTE VDD Q +D++ S + +
Sbjct: 421 KEGIRPNVVTYNSIIDAFGRPATTESVVDD-----AGQTSELQIDSLSSSAVEKATKSLV 475
Query: 594 AGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILN 653
A R DN+IIK+FGQL AEKAGQ K N QE++CILGVF KMH+L+IKPNVVTFSAILN
Sbjct: 476 ADREDNRIIKIFGQLAAEKAGQAK--NSGGQEMMCILGVFHKMHELEIKPNVVTFSAILN 533
Query: 654 ACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTAS 713
ACSRCNSFE+ASMLLEELRLFDNQVYGVAHGLLMGYR+N+W QA SLFDEVKLMDSSTAS
Sbjct: 534 ACSRCNSFEEASMLLEELRLFDNQVYGVAHGLLMGYRENVWEQAQSLFDEVKLMDSSTAS 593
Query: 714 AFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLL 773
AFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLL
Sbjct: 594 AFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLL 653
Query: 774 NIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAPFWVANCNLGRFI 833
N+ +IVFEGHE+PKLL SKVVGD LRRAVE LL GMGAPF A CNLGR I
Sbjct: 654 NVRAIVFEGHEVPKLL---------SKVVGDSTLRRAVEALLMGMGAPFRSAKCNLGRLI 704
Query: 834 STGPMVASW 842
STG +VASW
Sbjct: 705 STGSVVASW 713
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/609 (75%), Positives = 518/609 (85%), Gaps = 32/609 (5%)
Query: 276 GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL--WEAAR-----NLFNEMVHR 328
G D+ ++ + +G++P+ +T+N+++ C +GG+ AA NLF+EM++R
Sbjct: 147 GSDDYTFLLRELGNRGDSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYR 206
Query: 329 GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDA 388
GI+QDIFTYNTLLDA+CKG QMDLAF+IM+EMP K+I PNVVTYST+IDGYAKAGRLD+A
Sbjct: 207 GIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEA 266
Query: 389 LNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGG 448
LN+F+EMKF IGLDRVSYNT+LSIYAKLGRFEEAL VCKEMESSGI+KDAVTYNALLGG
Sbjct: 267 LNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGG 326
Query: 449 YGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD 508
YGKQGKY+EV+R+FE+MKA+ + PNLLTYSTLIDVYSKGGLY+EAM++FREFK+AGLKAD
Sbjct: 327 YGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKAD 386
Query: 509 VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVE 568
VVLYSALIDALCKNGLVESAVS LDEMTKEGIRPNVVTYNSIIDAFGRS E D E
Sbjct: 387 VVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVE---DATE 443
Query: 569 RDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILC 628
++G DK+ DNQIIK+FGQL AEK KKENR RQEILC
Sbjct: 444 SEVG---------------DKE-------DNQIIKIFGQLAAEKTCHAKKENRGRQEILC 481
Query: 629 ILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMG 688
IL VF KMH+L IKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMG
Sbjct: 482 ILAVFHKMHELDIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMG 541
Query: 689 YRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENV 748
Y DN+WVQA SLFDEVK MDSSTASAFYNALTDMLWHFGQ+RGAQLVVLEGKRR VWEN+
Sbjct: 542 YGDNVWVQAQSLFDEVKQMDSSTASAFYNALTDMLWHFGQRRGAQLVVLEGKRRHVWENM 601
Query: 749 WSESCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALR 808
WS SCLDLHLMSSGAARAMVHAWLLNI SIVFEGHELP+LLSILTGWGKHSKVVGDGALR
Sbjct: 602 WSNSCLDLHLMSSGAARAMVHAWLLNIRSIVFEGHELPQLLSILTGWGKHSKVVGDGALR 661
Query: 809 RAVEVLLTGMGAPFWVANCNLGRFISTGPMVASWLRESGTLKVLVLHDDRTHSENAGFDE 868
RA+E LLTGMGAPF VA CNLGRFISTG +VA+WLRESGTLKVLVLHDDRT+ + A +
Sbjct: 662 RAIEALLTGMGAPFRVAKCNLGRFISTGAVVAAWLRESGTLKVLVLHDDRTNPDRARCSQ 721
Query: 869 MLNMQTLTL 877
+ N+QTL L
Sbjct: 722 ISNLQTLPL 730
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 929 bits (2402), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/863 (53%), Positives = 620/863 (71%), Gaps = 26/863 (3%)
Query: 3 STPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSPRNA 62
+ PP+ S + P Q Q N+H R H+ +S+ PLS + ++
Sbjct: 7 TPPPNYSSLPSAPRQRRQ-------NHHKRHRHYSNSK-----------SAPLSAAAGSS 48
Query: 63 PKPAATSTTVAPNPKPFHSLSPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIAMSTR-H 121
A + SL L +S LAP+FSGRRSTRF +KMH G P++ + H
Sbjct: 49 NAAATGRGNGSGRASTLGSL--LEGRQSRLAPEFSGRRSTRFAAKMHSGMPRVTPNKHAH 106
Query: 122 SVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAF 181
S A+EAL ++ + ++ ++L +E +L +DY ++L+E GN G + A +CF F
Sbjct: 107 SAAADEALSYLFNAGNNIAAIDNVLIAYESELWEVEDYIYMLKEFGNTGHFLLATKCFDF 166
Query: 182 AVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241
+ ++ + +GKL S MI LGRLG+++ A +FE+A EG+GNTVY+FSA+ISAYGR+
Sbjct: 167 IIWKQNGRIAKGKLVSTMIGTLGRLGEINHALRLFESARLEGHGNTVYSFSAMISAYGRN 226
Query: 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRIT 301
G+ +A+ +F SM+ + + PNL++YN++IDA KG VDF VV+ FD+ML G+ PDR+T
Sbjct: 227 GHFSDAVDLFRSMRSWGVYPNLISYNSLIDAGAKGEVDFDVVVKFFDEMLAEGIVPDRLT 286
Query: 302 FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMP 361
+NSLL+VC+ G+WE A+ L +EM +GI +D FTYNT LD +CKG Q+DLA ++ EM
Sbjct: 287 YNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMS 346
Query: 362 AKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFE 421
++ + P VVTYSTMIDG AKA L+DALN++ EMK I +DRVSYNT++ IYAKLGRF+
Sbjct: 347 SRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFD 406
Query: 422 EALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLI 481
EA+ CKEMES G+++D VTYNALL GYG+ G YDEVRR+FE+MKA + PN LTYST+I
Sbjct: 407 EAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMI 466
Query: 482 DVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIR 541
DVY+KGG+++EAM ++++FK+A L+ DVV Y+++ID+LCKNGLVES++ LL M ++GI+
Sbjct: 467 DVYTKGGMFQEAMDVYKDFKKAQLEVDVVFYTSIIDSLCKNGLVESSIMLLIAMIEKGIK 526
Query: 542 PNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQI 601
PNVVT+NSIIDA +S T E V + + + + L +M D + G D++I
Sbjct: 527 PNVVTFNSIIDASRQSPTLEYGVHGSSQAV--EYPTEQLSSMLI-DGAFQNKTG--DDRI 581
Query: 602 IKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSF 661
+K+F QL AEKAG +K+ + RQ+ CIL +FQKMH+L IKPNVVTFSAILNACSRCNSF
Sbjct: 582 LKMFEQLAAEKAGHREKDRKGRQDQHCILWLFQKMHELNIKPNVVTFSAILNACSRCNSF 641
Query: 662 EDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTD 721
EDASMLL LRLFDNQVYGV HGLLMGYR+ +W QA +LFDE++ MDSSTASAFYNALTD
Sbjct: 642 EDASMLLGALRLFDNQVYGVTHGLLMGYREQVWFQAQTLFDEMRRMDSSTASAFYNALTD 701
Query: 722 MLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIHSIVFE 781
MLW FGQ+RGA++VV EG+RR VW+ WS SCLDLHLMS GAA AMVH+WLLN+HS +FE
Sbjct: 702 MLWQFGQRRGAEMVVTEGRRRNVWKGEWSISCLDLHLMSCGAACAMVHSWLLNMHSTLFE 761
Query: 782 GHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAPFWVANCNLGRFISTGPMVAS 841
G ELPK+++ILTGWGKHSKV+GDG L+RAVE LL GMG+PF +A NLGR+ S G ++A+
Sbjct: 762 GSELPKIVTILTGWGKHSKVMGDGTLKRAVEALLNGMGSPFRIAEGNLGRYYSPGNLLAT 821
Query: 842 WLRESGTLKVLVLHDDRTHSENA 864
WLR+ +LVL+D HS+ A
Sbjct: 822 WLRQPSIFNLLVLYDVLNHSQAA 844
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357502623|ref|XP_003621600.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355496615|gb|AES77818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/884 (50%), Positives = 600/884 (67%), Gaps = 30/884 (3%)
Query: 3 STPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPS---SRPHWTSHKVSLTKPPLSPSP 59
+ PP+ S P + HNH + R SHH + R W+S + +P
Sbjct: 6 TPPPNYSSLPAAPRNAENHHHNHKNQQNSRHSHHSTHKRPRDRWSSSSRHYSSSNSAPLA 65
Query: 60 RNAPKPAATSTTVAPNPK-------------PFHSLSPLPSSKSELAPDFSGRRSTRFVS 106
A + + P +S + L +S LAP+FSGR+STRF +
Sbjct: 66 AAAVAEVGANGSGNAAAAAAAAGGRGNGRGRPAYSSTLLEGRQSRLAPEFSGRKSTRFAA 125
Query: 107 KMHFGRPKIAMSTR-HSVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRE 165
KMH G P++ + HS A+EAL + + ++ ++ +E KL +DY ++L+E
Sbjct: 126 KMHSGMPRVTPNKHAHSAAADEALSCLFKAGNNIAAIDNVFISYEHKLWEVEDYIYMLKE 185
Query: 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG 225
GN A +CF F + ++ + D+GKL SAMI LGRLG+++LA +FE A EGYG
Sbjct: 186 FGNTRSLLHAKKCFDFIMSKQNGRVDKGKLVSAMIGTLGRLGEINLALGLFERARLEGYG 245
Query: 226 NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVE 285
+TV++FSA+ISA+GR+G +A+ +F SM + + PN++TYN++IDA KG V F VV+
Sbjct: 246 STVHSFSAMISAFGRNGRFPDAVDLFRSMSSWGVVPNVITYNSIIDAGAKGEVSFDVVVK 305
Query: 286 IFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAIC 345
+D+M+ NG+ PDR+T+NSLL+VC+ G+WE A+ L +EM HR I D+FTYNT LD +C
Sbjct: 306 FYDEMIANGLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLC 365
Query: 346 KGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRV 405
K Q+DLA + EM +K + PNVVTYS M+DGYAKA L+DALN++ EMK + LDRV
Sbjct: 366 KAGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDRV 425
Query: 406 SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM 465
SYNT++ IY KLG +EA+ CKEME SGI +D VTYNALL GYGK G YDEVRR+FE+M
Sbjct: 426 SYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEEM 485
Query: 466 KADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLV 525
KA + PN LTYST+ID+Y+KG +++EAM ++REFK A L+ DVV YSA+ID LCKNGL+
Sbjct: 486 KARNIYPNTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEIDVVFYSAIIDTLCKNGLM 545
Query: 526 ESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCS 585
ES++ LL M ++GI+PNVVT+NSIIDA +S T E G S +D
Sbjct: 546 ESSIMLLMAMMEKGIKPNVVTFNSIIDASQQSPTLE---------YGVNGSSDAIDYPIE 596
Query: 586 QDDKDVQEAGRT----DNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKI 641
Q V + +++I+K+F QL AEKAG KK RQ+ CIL +FQKMH+L I
Sbjct: 597 QSSPIVIDGAFQNKPGEDRILKMFEQLAAEKAGHLKKNRSGRQDKHCILWLFQKMHELNI 656
Query: 642 KPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLF 701
KPNVVTFSAILNACS CNS+EDAS+LL+ LRLFDNQVYGV +GLLMGYR+ +W+ A +LF
Sbjct: 657 KPNVVTFSAILNACSLCNSYEDASLLLDTLRLFDNQVYGVTNGLLMGYREQVWLSAETLF 716
Query: 702 DEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSS 761
DE+ MD ST+SAFYNALTDMLWHFGQKRGA++VV+EG+RR VW+ WS SCLDLHLMS
Sbjct: 717 DELMCMDPSTSSAFYNALTDMLWHFGQKRGAEMVVIEGRRRNVWKGEWSISCLDLHLMSC 776
Query: 762 GAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAP 821
GAA AMVH+WLL++HS +F+G +LPK ++ILTGWGKHSKV+GDG L++AVE LL GMG+P
Sbjct: 777 GAACAMVHSWLLSLHSSLFQGIQLPKFVNILTGWGKHSKVLGDGTLKKAVEALLNGMGSP 836
Query: 822 FWVANCNLGRFISTGPMVASWLRESGTLKVLVLHDDRTHSENAG 865
F + NLGR +S G ++ +WL + G +LVL D HS+ A
Sbjct: 837 FRIYENNLGRLVSPGEVLTAWLTKPGVFNLLVLSDVLNHSQPAA 880
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 877 | ||||||
| TAIR|locus:2061310 | 918 | GUN1 "AT2G31400" [Arabidopsis | 0.904 | 0.863 | 0.704 | 3.6e-304 | |
| TAIR|locus:2027166 | 862 | PTAC2 "plastid transcriptional | 0.785 | 0.799 | 0.260 | 5.5e-77 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.482 | 0.516 | 0.308 | 1.4e-64 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.521 | 0.611 | 0.287 | 1.7e-55 | |
| TAIR|locus:2044430 | 822 | AT2G18940 [Arabidopsis thalian | 0.583 | 0.622 | 0.274 | 9.4e-52 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.399 | 0.555 | 0.308 | 6.9e-51 | |
| TAIR|locus:2026207 | 548 | AT1G62680 [Arabidopsis thalian | 0.431 | 0.689 | 0.301 | 5.3e-50 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.482 | 0.688 | 0.301 | 1.5e-49 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.401 | 0.559 | 0.316 | 1.9e-49 | |
| TAIR|locus:2026172 | 485 | NG1 "novel gene 1" [Arabidopsi | 0.403 | 0.729 | 0.304 | 2.1e-49 |
| TAIR|locus:2061310 GUN1 "AT2G31400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2881 (1019.2 bits), Expect = 3.6e-304, Sum P(2) = 3.6e-304
Identities = 568/806 (70%), Positives = 651/806 (80%)
Query: 56 SPSPRNAPKPAATSTTVAP-NXXXXXXXXXXXXXXXXXXXDFSGRRSTRFVSKMHFGRPK 114
S SPR + P ++ TVAP DFSGRRSTRFVSKMHFGR K
Sbjct: 95 SSSPRGSAPPPSSVATVAPAQLSQPPNFSPLQTPKSDLSSDFSGRRSTRFVSKMHFGRQK 154
Query: 115 IAMSTRHSVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSK 174
M+TRHS AE+AL + F+ DD ++ FE KLCG+DD T+++RELGNR E K
Sbjct: 155 TTMATRHSSAAEDALQNAIDFSGDDEMFHSLMLSFESKLCGSDDCTYIIRELGNRNECDK 214
Query: 175 AIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234
A+ + FAVKRE RKN+QGKLASAMIS LGR GKV +AK IFETA GYGNTVYAFSAL
Sbjct: 215 AVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSAL 274
Query: 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNG 294
ISAYGRSG +EAISVFNSMK Y L+PNLVTYNAVIDACGKGG++FK V + FD+M RNG
Sbjct: 275 ISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNG 334
Query: 295 VQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAF 354
VQPDRITFNSLLAVCSRGGLWEAARNLF+EM +R I+QD+F+YNTLLDAICKG QMDLAF
Sbjct: 335 VQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAF 394
Query: 355 EIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414
EI+A+MP K I PNVV+YST+IDG+AKAGR D+ALN+F EM++LGI LDRVSYNT+LSIY
Sbjct: 395 EILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIY 454
Query: 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL 474
K+GR EEAL + +EM S GI+KD VTYNALLGGYGKQGKYDEV+++F +MK + V PNL
Sbjct: 455 TKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNL 514
Query: 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDE 534
LTYSTLID YSKGGLYKEAM+IFREFK AGL+ADVVLYSALIDALCKNGLV SAVSL+DE
Sbjct: 515 LTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDE 574
Query: 535 MTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEA 594
MTKEGI PNVVTYNSIIDAFGRSAT + + D S+ L A+ +
Sbjct: 575 MTKEGISPNVVTYNSIIDAFGRSATMDRSAD-YSNGGSLPFSSSALSALTETEG------ 627
Query: 595 GRTDNQIIKVFGQLVAEKAGQGKKE-NRCRQEILCILGVFQKMHKLKIKPNVVTFSAILN 653
N++I++FGQL E + K+ QE+ CIL VF+KMH+L+IKPNVVTFSAILN
Sbjct: 628 ----NRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILN 683
Query: 654 ACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTAS 713
ACSRCNSFEDASMLLEELRLFDN+VYGV HGLLMG R+N+W+QA SLFD+V MD STAS
Sbjct: 684 ACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMGQRENVWLQAQSLFDKVNEMDGSTAS 743
Query: 714 AFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLL 773
AFYNALTDMLWHFGQKRGA+LV LEG+ RQVWENVWS+SCLDLHLMSSGAARAMVHAWLL
Sbjct: 744 AFYNALTDMLWHFGQKRGAELVALEGRSRQVWENVWSDSCLDLHLMSSGAARAMVHAWLL 803
Query: 774 NIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAPFWVANCNLGRFI 833
NI SIV+EGHELPK+LSILTGWGKHSKVVGDGALRRAVEVLL GM APF ++ CN+GRF
Sbjct: 804 NIRSIVYEGHELPKVLSILTGWGKHSKVVGDGALRRAVEVLLRGMDAPFHLSKCNMGRFT 863
Query: 834 STGPMVASWLRESGTLKVLVLHDDRT 859
S+G +VA+WLRES TLK+L+LHD T
Sbjct: 864 SSGSVVATWLRESATLKLLILHDHIT 889
|
|
| TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
Identities = 190/728 (26%), Positives = 388/728 (53%)
Query: 96 FSGRRSTRFVSKMHFGRPKIAMST-RHSVVAEEALHHVTAFARDDVSLGDILKKFEFKLC 154
FSG+ + + G P +++ ++S E ++ +++ S+ L F+ KL
Sbjct: 47 FSGKIKAK-TKDLVLGNPSVSVEKGKYSYDVESLINKLSSLPPRG-SIARCLDIFKNKL- 103
Query: 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKN 214
+D+ + +E RG+W ++++ F + ++ K ++ + + MIS+LGR G +D
Sbjct: 104 SLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNE-HIYTIMISLLGREGLLDKCLE 162
Query: 215 IFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274
+F+ ++G +V++++ALI+AYGR+G + ++ + + MK + P+++TYN VI+AC
Sbjct: 163 VFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACA 222
Query: 275 KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDI 334
+GG+D++ ++ +F +M G+QPD +T+N+LL+ C+ GL + A +F M GI D+
Sbjct: 223 RGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDL 282
Query: 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSE 394
TY+ L++ K +++ +++ EM + P++ +Y+ +++ YAK+G + +A+ +F +
Sbjct: 283 TTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQ 342
Query: 395 MKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454
M+ G + +Y+ +L+++ + GR+++ + EM+SS DA TYN L+ +G+ G
Sbjct: 343 MQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGY 402
Query: 455 YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSA 514
+ EV +F M + + P++ TY +I KGGL+++A +I + + Y+
Sbjct: 403 FKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTG 462
Query: 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQ 574
+I+A + L E A+ + M + G P++ T++S++ +F R V + E L +
Sbjct: 463 VIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGL----VKESEAILSRL 518
Query: 575 KESA---NLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILG 631
+S N D +Q + ++ G+ + + +K + + EK+ + + R + +L +
Sbjct: 519 VDSGIPRNRDTFNAQIEA-YKQGGKFE-EAVKTYVDM--EKS-RCDPDERTLEAVLSVYS 573
Query: 632 V----------FQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQV--- 678
F++M I P+++ + +L + ++D + LLEE+ N+V
Sbjct: 574 FARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEM--LSNRVSNI 631
Query: 679 YGVAHGLLMG-YRDNI-WVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVV 736
+ V ++ G Y D+ W + D++ FYNAL D LW GQK A V+
Sbjct: 632 HQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVL 691
Query: 737 LEGKRRQVWENVWSESCL----DLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSIL 792
E +R ++ ++ ++ L D+H MS G + WL +I+ ++ +G +LP+L ++
Sbjct: 692 NEATKRGLFPELFRKNKLVWSVDVHRMSEGGMYTALSVWLNDINDMLLKG-DLPQLAVVV 750
Query: 793 TGWGKHSK 800
+ G+ K
Sbjct: 751 SVRGQLEK 758
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
Identities = 131/425 (30%), Positives = 245/425 (57%)
Query: 139 DVSLGDILKKFEFKL-CGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKND-QGKLA 196
D L ++ + F+ K + + L+ LG ++ A++ F + +K+++ ++ +
Sbjct: 117 DSVLSELFEPFKDKPESTSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVV 176
Query: 197 SAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKR 256
+ +IS+LG+ G+V A N+F +G+ VY++++LISA+ SG +EA++VF M+
Sbjct: 177 AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEE 236
Query: 257 YNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316
KP L+TYN +++ GK G + + + + M +G+ PD T+N+L+ C RG L +
Sbjct: 237 DGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQ 296
Query: 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376
A +F EM G D TYN LLD K + A +++ EM SP++VTY+++I
Sbjct: 297 EAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLI 356
Query: 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIR 436
YA+ G LD+A+ + ++M G D +Y T+LS + + G+ E A+ + +EM ++G +
Sbjct: 357 SAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCK 416
Query: 437 KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQI 496
+ T+NA + YG +GK+ E+ ++F+++ +SP+++T++TL+ V+ + G+ E +
Sbjct: 417 PNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGV 476
Query: 497 FREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556
F+E K+AG + ++ LI A + G E A+++ M G+ P++ TYN+++ A R
Sbjct: 477 FKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALAR 536
Query: 557 SATTE 561
E
Sbjct: 537 GGMWE 541
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 575 (207.5 bits), Expect = 1.7e-55, P = 1.7e-55
Identities = 137/477 (28%), Positives = 256/477 (53%)
Query: 210 DLAKNIFETALNEGYG---NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTY 266
+ A +F++ L E Y +T F ++ +Y R +A+S+ + + + P +++Y
Sbjct: 114 EYASLVFKS-LQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSY 172
Query: 267 NAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLL-AVCSRGGLWEAARNLFNEM 325
NAV+DA + + +F +ML + V P+ T+N L+ C G + + A LF++M
Sbjct: 173 NAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNI-DVALTLFDKM 231
Query: 326 VHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRL 385
+G ++ TYNTL+D CK ++D F+++ M K + PN+++Y+ +I+G + GR+
Sbjct: 232 ETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRM 291
Query: 386 DDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNAL 445
+ + +EM G LD V+YNT++ Y K G F +AL++ EM G+ +TY +L
Sbjct: 292 KEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSL 351
Query: 446 LGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL 505
+ K G + +QM+ + PN TY+TL+D +S+ G EA ++ RE G
Sbjct: 352 IHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGF 411
Query: 506 KADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVD 565
VV Y+ALI+ C G +E A+++L++M ++G+ P+VV+Y++++ F RS + +
Sbjct: 412 SPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALR 471
Query: 566 DVERDL---GKQKE----SANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKK 618
V+R++ G + + S+ + C Q + +EA ++++V G E
Sbjct: 472 -VKREMVEKGIKPDTITYSSLIQGFCEQ--RRTKEACDLYEEMLRV-GLPPDEFTYTALI 527
Query: 619 ENRCRQ-EILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLF 674
C + ++ L + +M + + P+VVT+S ++N ++ + +A LL L+LF
Sbjct: 528 NAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLL--LKLF 582
|
|
| TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 558 (201.5 bits), Expect = 9.4e-52, P = 9.4e-52
Identities = 144/524 (27%), Positives = 258/524 (49%)
Query: 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREER---KNDQGKLASAMISILGRLGKVDLAKN 214
D L++ L + G W +A+ F + V K D ++ + ILGR + +A
Sbjct: 138 DLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDH-QVIEIFVRILGRESQYSVAAK 196
Query: 215 IFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274
+ + + Y V A++ ++ AY R+G ++AI +F MK P LVTYN ++D G
Sbjct: 197 LLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFG 256
Query: 275 KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDI 334
K G ++ ++ + D+M G++ D T +++L+ C+R GL A+ F E+ G +
Sbjct: 257 KMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGT 316
Query: 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSE 394
TYN LL K A ++ EM + + VTY+ ++ Y +AG +A +
Sbjct: 317 VTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEM 376
Query: 395 MKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454
M G+ + ++Y TV+ Y K G+ +EAL + M+ +G + TYNA+L GK+ +
Sbjct: 377 MTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSR 436
Query: 455 YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSA 514
+E+ +M MK++ SPN T++T++ + G+ K ++FRE K G + D ++
Sbjct: 437 SNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNT 496
Query: 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSA---TTECTVDDVERDL 571
LI A + G A + EMT+ G V TYN++++A R + E + D++
Sbjct: 497 LISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKG 556
Query: 572 GKQKESA-NLDAMCSQDDKDVQEAGRTDNQIIK--VFGQLVAEKAGQGKKENRCRQEILC 628
K E++ +L C + R +N+I + +F + + +CR +
Sbjct: 557 FKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLL-LANFKCRA-LAG 614
Query: 629 ILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELR 672
F K KP++V F+++L+ +R N ++ A +LE +R
Sbjct: 615 SERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIR 658
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 534 (193.0 bits), Expect = 6.9e-51, P = 6.9e-51
Identities = 110/357 (30%), Positives = 203/357 (56%)
Query: 208 KVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYN 267
K A + + + +G + + +++ + G A ++ N M++ L+P ++ YN
Sbjct: 201 KASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYN 260
Query: 268 AVIDACGKGGVDFKHV---VEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNE 324
+ID K +KH+ + +F +M G++P+ +T++SL++ G W A L ++
Sbjct: 261 TIIDGLCK----YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSD 316
Query: 325 MVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR 384
M+ R I+ D+FT++ L+DA K ++ A ++ EM ++I P++VTYS++I+G+ R
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376
Query: 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA 444
LD+A MF M D V+YNT++ + K R EE + V +EM G+ + VTYN
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 436
Query: 445 LLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504
L+ G + G D + +F++M +D V PN++TY+TL+D K G ++AM +F +++
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496
Query: 505 LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTE 561
++ + Y+ +I+ +CK G VE L ++ +G++P+VV YN++I F R + E
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKE 553
|
|
| TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 526 (190.2 bits), Expect = 5.3e-50, P = 5.3e-50
Identities = 116/385 (30%), Positives = 207/385 (53%)
Query: 208 KVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYN 267
+V LA +I L GY +L++ + R +A+S+ + M KP++V YN
Sbjct: 135 QVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYN 194
Query: 268 AVIDA-CGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMV 326
A+ID+ C V+ + F ++ R G++P+ +T+ +L+ W A L ++M+
Sbjct: 195 AIIDSLCKTKRVN--DAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMI 252
Query: 327 HRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLD 386
+ I ++ TY+ LLDA K ++ A E+ EM +I P++VTYS++I+G R+D
Sbjct: 253 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRID 312
Query: 387 DALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALL 446
+A MF M G D VSYNT+++ + K R E+ + + +EM G+ + VTYN L+
Sbjct: 313 EANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLI 372
Query: 447 GGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK 506
G+ + G D+ + F QM +SP++ TY+ L+ G ++A+ IF + ++ +
Sbjct: 373 QGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMD 432
Query: 507 ADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDD 566
D+V Y+ +I +CK G VE A SL ++ +G++P++VTY +++ T+ + +
Sbjct: 433 LDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL----CTKGLLHE 488
Query: 567 VERDLGKQKESANLDAMCSQDDKDV 591
VE K K+ + C+ D D+
Sbjct: 489 VEALYTKMKQEGLMKNDCTLSDGDI 513
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 132/438 (30%), Positives = 229/438 (52%)
Query: 173 SKAIQCFAFAVKREERKNDQGKLAS--AMISILGRLGKVDLAKNIFETALNEGYGNTVYA 230
+KA + A V+R K Q L + A+I+ L + G+ DLA N+ V
Sbjct: 184 NKASEAVAL-VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVI 242
Query: 231 FSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA-CGKGGVDFKHVVEIFDD 289
+S +I + + + +A+++F M ++P++ TY+++I C G + + D
Sbjct: 243 YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGR--WSDASRLLSD 300
Query: 290 MLRNGVQPDRITFNSLL-AVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA 348
ML + P+ +TFNSL+ A G L EA + LF+EM+ R ID +I TYN+L++ C
Sbjct: 301 MLERKINPNVVTFNSLIDAFAKEGKLIEAEK-LFDEMIQRSIDPNIVTYNSLINGFCMHD 359
Query: 349 QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYN 408
++D A +I M +K+ P+VVTY+T+I+G+ KA ++ D + +F +M G+ + V+Y
Sbjct: 360 RLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYT 419
Query: 409 TVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468
T++ + + + A +V K+M S G+ + +TYN LL G K GK ++ +FE ++
Sbjct: 420 TLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKS 479
Query: 469 CVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESA 528
+ P++ TY+ + + K G ++ +F G+K DV+ Y+ +I CK GL E A
Sbjct: 480 KMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEA 539
Query: 529 VSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANL--DAMCSQ 586
+L +M ++G P+ TYN++I A R + + L K+ S DA
Sbjct: 540 YTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAE-----LIKEMRSCRFAGDASTYG 594
Query: 587 DDKDVQEAGRTDNQIIKV 604
D+ GR D ++V
Sbjct: 595 LVTDMLHDGRLDKGFLEV 612
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 521 (188.5 bits), Expect = 1.9e-49, P = 1.9e-49
Identities = 113/357 (31%), Positives = 201/357 (56%)
Query: 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYN 258
+++ L + G +DLA ++ + V ++ +I A +A+++F M
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKG 285
Query: 259 LKPNLVTYNAVIDA-CGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLL-AVCSRGGLWE 316
++PN+VTYN++I C G + + DM+ + P+ +TF++L+ A G L E
Sbjct: 286 IRPNVVTYNSLIRCLCNYGR--WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 343
Query: 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376
A + L++EM+ R ID DIFTY++L++ C ++D A + M +K+ PNVVTY+T+I
Sbjct: 344 AEK-LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 402
Query: 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIR 436
G+ KA R+++ + +F EM G+ + V+YNT++ + G + A + K+M S G+
Sbjct: 403 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVP 462
Query: 437 KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQI 496
D +TY+ LL G K GK ++ +FE ++ + P++ TY+ +I+ K G ++ +
Sbjct: 463 PDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDL 522
Query: 497 FREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553
F G+K +V++Y+ +I C+ GL E A +L EM ++G PN TYN++I A
Sbjct: 523 FCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRA 579
|
|
| TAIR|locus:2026172 NG1 "novel gene 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 500 (181.1 bits), Expect = 2.1e-49, Sum P(2) = 2.1e-49
Identities = 109/358 (30%), Positives = 195/358 (54%)
Query: 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYN 258
+I+ L R + +A ++ + GY V S+LI+ + + +AI + + M+
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMG 169
Query: 259 LKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAA 318
+P++V YN +ID K G+ VE+FD M R+GV+ D +T+NSL+A G W A
Sbjct: 170 FRPDVVIYNTIIDGSCKIGL-VNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDA 228
Query: 319 RNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDG 378
L +MV R I ++ T+ ++D K + A ++ EM + + P+V TY+++I+G
Sbjct: 229 ARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLING 288
Query: 379 YAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD 438
GR+D+A M M G D V+YNT+++ + K R +E + +EM G+ D
Sbjct: 289 LCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGD 348
Query: 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFR 498
+TYN ++ GY + G+ D + +F +M + PN+ TYS L+ ++A+ +F
Sbjct: 349 TITYNTIIQGYFQAGRPDAAQEIFSRMDS---RPNIRTYSILLYGLCMNWRVEKALVLFE 405
Query: 499 EFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556
+++ ++ D+ Y+ +I +CK G VE A L ++ +G++P+VV+Y ++I F R
Sbjct: 406 NMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCR 463
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SIC9 | PP178_ARATH | No assigned EC number | 0.6949 | 0.9167 | 0.8758 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00028134001 | SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (867 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 877 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-38 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-36 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-28 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-27 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-26 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-25 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-24 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-24 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-24 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-22 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| smart00463 | 80 | smart00463, SMR, Small MutS-related domain | 2e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-10 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-08 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 4e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| PHA03420 | 137 | PHA03420, PHA03420, E4 protein; Provisional | 4e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-04 | |
| pfam05956 | 359 | pfam05956, APC_basic, APC basic domain | 9e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 8e-38
Identities = 84/326 (25%), Positives = 159/326 (48%), Gaps = 9/326 (2%)
Query: 231 FSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDD- 289
++ LIS +SG VF+ M ++ N+ T+ A+ID C + G V + F
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG----QVAKAFGAY 530
Query: 290 --MLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG--IDQDIFTYNTLLDAIC 345
M V+PDR+ FN+L++ C + G + A ++ EM ID D T L+ A
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 346 KGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRV 405
Q+D A E+ + NI Y+ ++ ++ G D AL+++ +MK G+ D V
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650
Query: 406 SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM 465
++ ++ + G ++A + ++ GI+ V+Y++L+G + + ++E +
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
Query: 466 KADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLV 525
K+ + P + T + LI +G +A+++ E K+ GL + + YS L+ A +
Sbjct: 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770
Query: 526 ESAVSLLDEMTKEGIRPNVVTYNSII 551
+ + LL + ++GI+PN+V I
Sbjct: 771 DVGLDLLSQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 3e-36
Identities = 89/342 (26%), Positives = 169/342 (49%), Gaps = 5/342 (1%)
Query: 227 TVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGG-VDFKHVVE 285
T+ F+ L+S S A+ V ++ LK + Y +I C K G VD + E
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA--MFE 493
Query: 286 IFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAIC 345
+F +M+ GV+ + TF +L+ C+R G A + M + + D +N L+ A
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 346 KGAQMDLAFEIMAEMPA--KNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD 403
+ +D AF+++AEM A I P+ +T ++ A AG++D A ++ + I
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613
Query: 404 RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFE 463
Y ++ ++ G ++ AL + +M+ G++ D V ++AL+ G G D+ + +
Sbjct: 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673
Query: 464 QMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNG 523
+ + ++YS+L+ S +K+A++++ + K L+ V +ALI ALC+
Sbjct: 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733
Query: 524 LVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVD 565
+ A+ +L EM + G+ PN +TY+ ++ A R + +D
Sbjct: 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 1e-28
Identities = 95/365 (26%), Positives = 169/365 (46%), Gaps = 24/365 (6%)
Query: 197 SAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKR 256
+++IS LG L + + + G+ V ++LI Y G EA VF+ M+
Sbjct: 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351
Query: 257 YNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316
+ V++ A+I K G+ K +E + M ++ V PD IT S+L+ C+ G +
Sbjct: 352 ----KDAVSWTAMISGYEKNGLPDK-ALETYALMEQDNVSPDEITIASVLSACACLGDLD 406
Query: 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376
L +G+ + N L++ K +D A E+ +P K+ V++++++I
Sbjct: 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD----VISWTSII 462
Query: 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMES---- 432
G R +AL F +M L + + V+ LS A++G AL+ KE+ +
Sbjct: 463 AGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIG----ALMCGKEIHAHVLR 517
Query: 433 SGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKE 492
+GI D NALL Y + G+ + F + D VS N+L + Y G
Sbjct: 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNIL-----LTGYVAHGKGSM 572
Query: 493 AMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE-GIRPNVVTYNSII 551
A+++F ++G+ D V + +L+ A ++G+V + M ++ I PN+ Y ++
Sbjct: 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632
Query: 552 DAFGR 556
D GR
Sbjct: 633 DLLGR 637
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-27
Identities = 81/360 (22%), Positives = 167/360 (46%), Gaps = 14/360 (3%)
Query: 198 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY 257
A++ L + K ++ + G+ Y + ++ + + G +A +F+ M
Sbjct: 128 ALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-- 185
Query: 258 NLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEA 317
+ NL ++ +I G +++ +F +M +G + TF +L + G A
Sbjct: 186 --ERNLASWGTIIGGLVDAG-NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242
Query: 318 ARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMID 377
+ L ++ G+ D F L+D K ++ A + MP K V +++M+
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT----TVAWNSMLA 298
Query: 378 GYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK 437
GYA G ++AL ++ EM+ G+ +D+ +++ ++ I+++L E A + +G
Sbjct: 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358
Query: 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIF 497
D V AL+ Y K G+ ++ R +F++M NL++++ LI Y G +A+++F
Sbjct: 359 DIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMF 414
Query: 498 REFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK-EGIRPNVVTYNSIIDAFGR 556
G+ + V + A++ A +GL E + M++ I+P + Y +I+ GR
Sbjct: 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 7e-26
Identities = 78/390 (20%), Positives = 148/390 (37%), Gaps = 75/390 (19%)
Query: 198 AMISILGRLGKVDLAKNIFETALNEG---------YGNTVYAFSALISAYGRSGYCQEAI 248
A+IS G+ G VD A ++ E G AL+ A +G A
Sbjct: 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVG-------ALMKACANAGQVDRAK 599
Query: 249 SVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAV 308
V+ + YN+K Y +++C + G D+ + I+DDM + GV+PD + F++L+ V
Sbjct: 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKG-DWDFALSIYDDMKKKGVKPDEVFFSALVDV 658
Query: 309 CSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN 368
G +D AFEI+ + + I
Sbjct: 659 AGHAGD-----------------------------------LDKAFEILQDARKQGIKLG 683
Query: 369 VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCK 428
V+YS+++ + A AL ++ ++K + + + N +++ + + +AL V
Sbjct: 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743
Query: 429 EMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLI------- 481
EM+ G+ + +TY+ LL ++ D + Q K D + PNL+ +
Sbjct: 744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRF 803
Query: 482 DVYSKGGL----------------YKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLV 525
+ G A+ ++RE AG + + S ++ L
Sbjct: 804 EKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDA 863
Query: 526 ESAVSLLDEMTKEGIRPNVVTYNSIIDAFG 555
L++ + ++++D FG
Sbjct: 864 TLRNRLIENLGISADSQKQSNLSTLVDGFG 893
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 2e-25
Identities = 103/449 (22%), Positives = 183/449 (40%), Gaps = 87/449 (19%)
Query: 235 ISAYGR---SGYCQEAISVFNSM-KRYNLKPNLVTYNAVIDACGKGGVDFKHVVEI--FD 288
I AY R G ++ I + M KR L + + + AC K V E F
Sbjct: 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRA----VKEAFRFA 429
Query: 289 DMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA 348
++RN P TFN L++VC+ + A + + G+ D Y TL+ K
Sbjct: 430 KLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG 486
Query: 349 QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYN 408
++D FE+ EM + NV T+ +IDG A+AG++ A + M+ + DRV +N
Sbjct: 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546
Query: 409 TVLSIYAKLGRFEEALLVCKEM--ESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMK 466
++S + G + A V EM E+ I D +T AL MK
Sbjct: 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL-------------------MK 587
Query: 467 ADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526
A G A ++++ + +K +Y+ +++ + G +
Sbjct: 588 ACA----------------NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD 631
Query: 527 SAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQ 586
A+S+ D+M K+G++P+ V +++++D G + DL K E
Sbjct: 632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHA-----------GDLDKAFEI--------- 671
Query: 587 DDKDVQEAGRTDNQI-IKVFGQL--VAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP 643
+Q+A + ++ + L A KK L +++ + +K++P
Sbjct: 672 ----LQDARKQGIKLGTVSYSSLMGACSNAKNWKKA----------LELYEDIKSIKLRP 717
Query: 644 NVVTFSAILNACSRCNSFEDASMLLEELR 672
V T +A++ A N A +L E++
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEMK 746
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-24
Identities = 89/412 (21%), Positives = 166/412 (40%), Gaps = 80/412 (19%)
Query: 246 EAISVFNSMK-RYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNS 304
EA+ +F ++ TY+A+++AC + V ++ + +G +PD+ N
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACI-ALKSIRCVKAVYWHVESSGFEPDQYMMNR 163
Query: 305 LLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN 364
+L + + G+ AR LF+EM R ++ ++ T++ + AF + EM
Sbjct: 164 VLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDG 219
Query: 365 ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEAL 424
T+ M+ A G + + G+ D ++ +Y+K G E+A
Sbjct: 220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR 279
Query: 425 LVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVY 484
V M K V +N++L GY G +E ++ +M+ VS + T+S +I ++
Sbjct: 280 CVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335
Query: 485 SKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV 544
S+ L + A Q + G D+V +AL+D K G +E A ++ D M R N+
Sbjct: 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL 391
Query: 545 VTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKV 604
+++N++I +G GR + +++
Sbjct: 392 ISWNALIAGYGNH-------------------------------------GRGT-KAVEM 413
Query: 605 FGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACS 656
F +++AE + PN VTF A+L+AC
Sbjct: 414 FERMIAEG----------------------------VAPNHVTFLAVLSACR 437
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 3e-24
Identities = 85/361 (23%), Positives = 176/361 (48%), Gaps = 17/361 (4%)
Query: 194 KLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNS 253
+L +AM+S+ R G++ A +F + E +++++ L+ Y ++GY EA+ +++
Sbjct: 122 RLGNAMLSMFVRFGELVHAWYVF-GKMPE---RDLFSWNVLVGGYAKAGYFDEALCLYHR 177
Query: 254 MKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGG 313
M ++P++ T+ V+ CG G D E+ ++R G + D N+L+ + + G
Sbjct: 178 MLWAGVRPDVYTFPCVLRTCG-GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236
Query: 314 LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYS 373
+AR +F+ M R D ++N ++ + + E+ M ++ P+++T +
Sbjct: 237 DVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292
Query: 374 TMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS 433
++I G M + G +D N+++ +Y LG + EA V ME
Sbjct: 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-- 350
Query: 434 GIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEA 493
KDAV++ A++ GY K G D+ + M+ D VSP+ +T ++++ + G
Sbjct: 351 --TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG 408
Query: 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553
+++ ++ GL + VV+ +ALI+ K ++ A+ + + +V+++ SII
Sbjct: 409 VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAG 464
Query: 554 F 554
Sbjct: 465 L 465
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-24
Identities = 101/458 (22%), Positives = 183/458 (39%), Gaps = 68/458 (14%)
Query: 223 GYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVI------DACGKG 276
G+ V +ALI+ Y + G A VF+ M R + +++NA+I C +G
Sbjct: 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEG 272
Query: 277 GVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFT 336
+E+F M V PD +T S+++ C G R + +V G D+
Sbjct: 273 -------LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325
Query: 337 YNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396
N+L+ A ++ + M K+ V+++ MI GY K G D AL ++ M+
Sbjct: 326 CNSLIQMYLSLGSWGEAEKVFSRMETKDA----VSWTAMISGYEKNGLPDKALETYALME 381
Query: 397 FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYD 456
+ D ++ +VLS A LG + + + + E G+ V NAL+ Y K D
Sbjct: 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441
Query: 457 EVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALI 516
+ +F + ++++++++I EA+ FR+ LK + V A +
Sbjct: 442 KALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAAL 496
Query: 517 DALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKE 576
A + G + + + + GI + N+++D + R
Sbjct: 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA------------- 543
Query: 577 SANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKM 636
+ S +KDV + L+ GK + +F +M
Sbjct: 544 ---WNQFNSH-EKDVVS-----------WNILLTGYVAHGKGS--------MAVELFNRM 580
Query: 637 HKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLF 674
+ + P+ VTF ++L ACSR + M+ + L F
Sbjct: 581 VESGVNPDEVTFISLLCACSR------SGMVTQGLEYF 612
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-22
Identities = 102/432 (23%), Positives = 192/432 (44%), Gaps = 61/432 (14%)
Query: 232 SALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDML 291
+A++S + R G A VF M + +L ++N ++ K G F + ++ ML
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGY-FDEALCLYHRML 179
Query: 292 RNGVQPDRITFNSLLAVCSRGGL--WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQ 349
GV+PD TF +L C GG+ R + +V G + D+ N L+ K
Sbjct: 180 WAGVRPDVYTFPCVLRTC--GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237
Query: 350 MDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNT 409
+ A + MP ++ ++++ MI GY + G + L +F M+ L + D ++ +
Sbjct: 238 VVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293
Query: 410 VLSIYAKLGRFEEALLVCKEMESSGIRK----DAVTYNALLGGYGKQGKYDEVRRMFEQM 465
V+S LG +E L +EM ++ D N+L+ Y G + E ++F +M
Sbjct: 294 VISACELLG--DERL--GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349
Query: 466 KADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLV 525
+ + ++++ +I Y K GL +A++ + +Q + D + ++++ A G +
Sbjct: 350 --ET--KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405
Query: 526 ESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCS 585
+ V L + ++G+ VV N++I+ + + K + A L+ +
Sbjct: 406 DVGVKLHELAERKGLISYVVVANALIEMYSKC---------------KCIDKA-LEVFHN 449
Query: 586 QDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNV 645
+KDV II + NRC + ++ F++M L +KPN
Sbjct: 450 IPEKDVISW----TSIIAGL-----------RLNNRCFEALI----FFRQM-LLTLKPNS 489
Query: 646 VTFSAILNACSR 657
VT A L+AC+R
Sbjct: 490 VTLIAALSACAR 501
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 6e-19
Identities = 102/409 (24%), Positives = 180/409 (44%), Gaps = 52/409 (12%)
Query: 376 IDGYA---KAGRLDDALNMFSEMKFLG-IGLDRVSYNTVLSIYAKLGRFEEALLVCKEME 431
ID Y + GR+ D +++ +M+ G + +D++ + K +EA K +
Sbjct: 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433
Query: 432 SSGIRKDAVTYNALLGGYGKQGKYD---EVRRMFEQ--MKADCVSPNLLTYSTLIDVYSK 486
+ + T+N L+ D V R+ ++ +KADC Y+TLI +K
Sbjct: 434 NPTLS----TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCK-----LYTTLISTCAK 484
Query: 487 GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVT 546
G ++F E AG++A+V + ALID + G V A M + ++P+ V
Sbjct: 485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544
Query: 547 YNSIIDAFGRSATTECTVD---DVERDLGKQKESANLDAM--------CSQDDKDVQEAG 595
+N++I A G+S VD DV ++ + + D + C+ AG
Sbjct: 545 FNALISACGQSG----AVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN-------AG 593
Query: 596 RTDNQIIKVFGQLVAEKAGQGKKE------NRCRQ--EILCILGVFQKMHKLKIKPNVVT 647
+ D + +V+ Q++ E +G E N C Q + L ++ M K +KP+ V
Sbjct: 594 QVD-RAKEVY-QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
Query: 648 FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNI--WVQALSLFDEVK 705
FSA+++ + A +L++ R ++ V++ LMG N W +AL L++++K
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711
Query: 706 LMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCL 754
+ + NAL L Q A V+ E KR + N + S L
Sbjct: 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 9e-18
Identities = 68/245 (27%), Positives = 121/245 (49%), Gaps = 18/245 (7%)
Query: 197 SAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKR 256
S MI I RL ++ AK + G+ + A +AL+ Y + G ++A +VF+ M R
Sbjct: 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388
Query: 257 YNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316
NL+++NA+I G G K VE+F+ M+ GV P+ +TF ++L+ C GL E
Sbjct: 389 ----KNLISWNALIAGYGNHGRGTK-AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443
Query: 317 AARNLFNEM--VHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYST 374
+F M HR I Y +++ + + +D A+ ++ P K P V ++
Sbjct: 444 QGWEIFQSMSENHR-IKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK---PTVNMWAA 499
Query: 375 MIDGYAKAGRLDDALNM--FSEMKFLGIGLDRV-SYNTVLSIYAKLGRFEEALLVCKEME 431
++ A R+ L + + K G+G +++ +Y +L++Y GR EA V + ++
Sbjct: 500 LLT----ACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555
Query: 432 SSGIR 436
G+
Sbjct: 556 RKGLS 560
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 4e-17
Identities = 85/371 (22%), Positives = 154/371 (41%), Gaps = 53/371 (14%)
Query: 174 KAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSA 233
KA++ +A ++++ D+ +AS + S LG +D+ + E A +G + V +A
Sbjct: 372 KALETYAL-MEQDNVSPDEITIASVL-SACACLGDLDVGVKLHELAERKGLISYVVVANA 429
Query: 234 LISAYGRSGYCQEAISVFNSMKRYN------------------------------LKPNL 263
LI Y + +A+ VF+++ + LKPN
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNS 489
Query: 264 VTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFN 323
VT A + AC + G EI +LR G+ D N+LL + R G A N FN
Sbjct: 490 VTLIAALSACARIGA-LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548
Query: 324 EMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAG 383
H +D+ ++N LL + +A E+ M ++P+ VT+ +++ +++G
Sbjct: 549 --SHE---KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603
Query: 384 RLDDALNMFSEMKF-LGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTY 442
+ L F M+ I + Y V+ + + G+ EA +M I D +
Sbjct: 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVW 660
Query: 443 NALLGGYGKQGKYD----EVRRMFEQMKADCVSPNLLTYSTLI-DVYSKGGLYKEAMQIF 497
ALL + + +FE PN + Y L+ ++Y+ G + E ++
Sbjct: 661 GALLNACRIHRHVELGELAAQHIFEL------DPNSVGYYILLCNLYADAGKWDEVARVR 714
Query: 498 REFKQAGLKAD 508
+ ++ GL D
Sbjct: 715 KTMRENGLTVD 725
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 75.5 bits (187), Expect = 4e-17
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 508 DVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556
DVV Y+ LID CK G VE A+ L +EM K GI+PNV TY+ +ID +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.2 bits (181), Expect = 2e-16
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 333 DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK 381
D+ TYNTL+D CK +++ A ++ EM + I PNV TYS +IDG K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 4e-16
Identities = 64/247 (25%), Positives = 118/247 (47%), Gaps = 19/247 (7%)
Query: 198 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY 257
A +S R+G + K I L G G + +AL+ Y R G A + FNS ++
Sbjct: 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK- 552
Query: 258 NLKPNLVTYNAVID---ACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL 314
++V++N ++ A GKG + VE+F+ M+ +GV PD +TF SLL CSR G+
Sbjct: 553 ----DVVSWNILLTGYVAHGKGSM----AVELFNRMVESGVNPDEVTFISLLCACSRSGM 604
Query: 315 WEAARNLFNEMVHR-GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYS 373
F+ M + I ++ Y ++D + + ++ A+ + +MP I+P+ +
Sbjct: 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWG 661
Query: 374 TMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVL-SIYAKLGRFEEALLVCKEMES 432
+++ ++ L + + + V Y +L ++YA G+++E V K M
Sbjct: 662 ALLNACRIHRHVE--LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719
Query: 433 SGIRKDA 439
+G+ D
Sbjct: 720 NGLTVDP 726
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 9e-14
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 367 PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK 416
P+VVTY+T+IDGY K G++++AL +F+EMK GI + +Y+ ++ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 1e-13
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 297 PDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK 346
PD +T+N+L+ + G E A LFNEM RGI +++TY+ L+D +CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 1e-13
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 437 KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK 486
D VTYN L+ GY K+GK +E ++F +MK + PN+ TYS LID K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 9e-13
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 228 VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK 275
V ++ LI Y + G +EA+ +FN MK+ +KPN+ TY+ +ID K
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 2e-12
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 472 PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK 521
P+++TY+TLID Y K G +EA+++F E K+ G+K +V YS LID LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|214676 smart00463, SMR, Small MutS-related domain | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-12
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 751 ESCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRA 810
+ LDLH ++ A + +L N L + L I+TG GKHS G ++ A
Sbjct: 1 KWSLDLHGLTVEEALTALDKFLNNARL-----KGLEQKLVIITGKGKHSL-GGKSGVKPA 54
Query: 811 VEVLLTGMGAPFWV 824
++ L F
Sbjct: 55 LKEHLRVESFRFAE 68
|
Length = 80 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 60.8 bits (149), Expect = 3e-12
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 363 KNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396
K + P+VVTY+T+IDG +AGR+D+A+ + EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 5e-12
Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 261 PNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR 311
P++VTYN +ID K G + +++F++M + G++P+ T++ L+ +
Sbjct: 1 PDVVTYNTLIDGYCKKG-KVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 55.0 bits (134), Expect = 5e-10
Identities = 21/32 (65%), Positives = 24/32 (75%)
Query: 504 GLKADVVLYSALIDALCKNGLVESAVSLLDEM 535
GLK DVV Y+ LID LC+ G V+ AV LLDEM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 3e-08
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 370 VTYSTMIDGYAKAGRLDDALNMFSEMKFLGI 400
VTY+++I GY KAG+L++AL +F EMK G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.2 bits (131), Expect = 4e-08
Identities = 45/224 (20%), Positives = 84/224 (37%), Gaps = 4/224 (1%)
Query: 314 LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTY 372
L EA L + L A+ K +++ A E++ + + PN
Sbjct: 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEAL 98
Query: 373 STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEME- 431
+ G+ ++AL + + L D L +LG +EEAL + ++
Sbjct: 99 LNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE 158
Query: 432 -SSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLY 490
+ + A AL G+Y+E + E+ + L +Y K G Y
Sbjct: 159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218
Query: 491 KEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDE 534
+EA++ + + + LY+ L L + G E A+ L++
Sbjct: 219 EEALEYYEKALELDPDNAEALYN-LALLLLELGRYEEALEALEK 261
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 2e-07
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 370 VTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD 403
VTY+T+IDG KAGR+++AL +F EMK GI D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 2e-07
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 510 VLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV 544
V Y+ LID LCK G VE A+ L EM + GI P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 4e-07
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPN 473
VTYN L+ G K G+ +E +F++MK + P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 5e-07
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 510 VLYSALIDALCKNGLVESAVSLLDEMTKEGI 540
V Y++LI CK G +E A+ L EM ++G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 264 VTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD 298
VTYN +ID K G + +E+F +M G++PD
Sbjct: 1 VTYNTLIDGLCKAG-RVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 405 VSYNTVLSIYAKLGRFEEALLVCKEMESSGI 435
V+YN+++S Y K G+ EEAL + KEM+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 7e-06
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 405 VSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDA 439
V+YNT++ K GR EEAL + KEM+ GI D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 8e-06
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 433 SGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMK 466
G++ D VTYN L+ G + G+ DE + ++M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCV 470
VTYN+L+ GY K GK +E +F++MK V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADV 509
TY+TLID K G +EA+++F+E K+ G++ DV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 5e-05
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 509 VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP 542
+ Y+AL+ AL K G + A+++L+EM G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (96), Expect = 6e-05
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 328 RGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMP 361
+G+ D+ TYNTL+D +C+ ++D A E++ EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGL 505
TY++LI Y K G +EA+++F+E K+ G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-05
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 229 YAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN 262
++ LI ++G +EA+ +F MK ++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 9e-05
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 264 VTYNAVIDACGKGGVDFKHVVEIFDDMLRNGV 295
VTYN++I K G + +E+F +M GV
Sbjct: 1 VTYNSLISGYCKAG-KLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 9e-05
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNV 369
TYNTL+D +CK +++ A E+ EM + I P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGI 330
+T+NSL++ + G E A LF EM +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 229 YAFSALISAYGRSGYCQEAISVFNSMKRYNL 259
+++LIS Y ++G +EA+ +F MK +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 2e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDI 334
+T+N+L+ + G E A LF EM RGI+ D+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 405 VSYNTVLSIYAKLGRFEEALLVCKEMESSGIR 436
+YN +L AK G + AL V +EM++SG++
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|177648 PHA03420, PHA03420, E4 protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 4e-04
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 2 ASTPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSPRN 61
P H P++ HQ +HL++ H H H S + + ++ P
Sbjct: 49 LDRPHH------HPHR-HQQDDHHLQDRQHLPQQHLQRPHHPLSPQC---QQNVTGKPVL 98
Query: 62 APKPAATSTTVAP 74
+P V P
Sbjct: 99 QQEPKVGQEVVIP 111
|
Length = 137 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 8e-04
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 632 VFQKMHKLKIKPNVVTFSAILNACSR 657
+F +M K IKPNV T+S +++ +
Sbjct: 25 LFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 8e-04
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 334 IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISP 367
+ TYN LL A+ K DLA ++ EM A + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 8e-04
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 369 VVTYSTMIDGYAKAGRLDDALNMFSEMK 396
+ TY+ ++ AKAG D AL + EMK
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMK 28
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|218825 pfam05956, APC_basic, APC basic domain | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 9e-04
Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 20/119 (16%)
Query: 4 TPPHCSITATKPYQNHQYPHNHLKNNHHRQSH--------HP--SSRPHWTSHKV----- 48
P + P ++ P + HR + P S+ P K
Sbjct: 26 KGPPLKTQPSDPPKSPS-PGQQRSRSLHRPAKPSELAELSPPPRSATPPARLAKTPSSSS 84
Query: 49 SLTKPPLSPSPRNAPKPAATSTTVAPNPKPFHSLSPLPSSKSE----LAPDFSGRRSTR 103
S T P P PR P+P ++ + P P +SLS +P + S LA S ++ +
Sbjct: 85 SQTSTPSQPLPRPLPRPTQSAGRNSILPGPGNSLSQVPRTSSPARALLASSGSQHKTQK 143
|
This region of the APC family of proteins is known as the basic domain. It contains a high proportion of positively charged amino acids and interacts with microtubules. Length = 359 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.001
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLKA 507
TY+ L+ +K G A+ + E K +GLK
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.002
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 539 GIRPNVVTYNSIIDAFGRS 557
G++P+VVTYN++ID R+
Sbjct: 2 GLKPDVVTYNTLIDGLCRA 20
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 293 NGVQPDRITFNSLL-AVCSRGGLWEAARNLFNEMV 326
G++PD +T+N+L+ +C R G + A L +EM
Sbjct: 1 KGLKPDVVTYNTLIDGLC-RAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGI 330
T+N+LL ++ G + A + EM G+
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGL 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.004
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 258 NLKPNLVTYNAVIDA-CGKGGVDFKHVVEIFDDM 290
LKP++VTYN +ID C G VD VE+ D+M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDE--AVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 877 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.75 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.74 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.73 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.7 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.65 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.62 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.6 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.59 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.57 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.55 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.53 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.52 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.51 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.49 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.48 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.47 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.46 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.46 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.44 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.43 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.4 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.38 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.38 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.35 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.34 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.34 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.31 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.3 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.29 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.28 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.27 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.25 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.25 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.24 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.23 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.22 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.2 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.17 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.17 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.17 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.16 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.14 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.14 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.13 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.13 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.12 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.11 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.06 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.04 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.04 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.03 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.01 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.0 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.0 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.97 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.97 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.95 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.94 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.93 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.92 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.92 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.91 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.9 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.87 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.87 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.84 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.83 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.81 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.78 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.74 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.73 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.69 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.67 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.63 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.63 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.62 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.6 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.58 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.51 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.51 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.47 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.43 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.38 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.37 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.36 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.35 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.35 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.34 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.33 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.31 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.3 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.3 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.29 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.29 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.27 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.25 | |
| smart00463 | 80 | SMR Small MutS-related domain. | 98.24 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.2 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.19 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.19 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.1 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.1 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.02 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.93 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.89 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.83 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.82 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.79 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.76 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.75 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.71 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.69 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.68 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.67 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.66 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.65 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.53 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.51 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.51 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.5 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.5 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.48 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.48 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.45 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.45 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.44 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.41 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.39 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.39 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.38 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.38 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.36 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.35 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.34 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.34 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.33 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.33 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.32 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.32 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.31 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.31 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.3 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.29 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.29 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.27 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.25 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.24 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.17 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.16 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.13 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.09 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.07 | |
| PF01713 | 83 | Smr: Smr domain; InterPro: IPR002625 This family i | 97.04 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.99 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.94 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.89 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.88 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.86 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.85 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.83 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.83 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.79 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.75 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.73 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.73 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.71 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.67 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.67 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.64 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.64 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.59 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.53 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.41 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.35 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.34 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.34 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.3 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.24 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.23 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.22 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.22 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.21 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.03 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.81 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.77 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.58 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.56 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.4 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.39 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.36 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.31 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.25 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.21 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.16 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.15 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.12 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.06 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.06 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.05 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.05 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.03 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.01 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.96 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.93 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.86 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.85 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.84 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.83 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.83 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.63 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.55 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.43 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.4 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.39 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.36 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.14 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.02 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.01 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.0 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.97 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.96 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.95 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.91 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.84 | |
| KOG1923 | 830 | consensus Rac1 GTPase effector FRL [Signal transdu | 93.8 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.7 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 93.46 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.43 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.4 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.36 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.33 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.27 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.27 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.26 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.13 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.09 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.08 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.85 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.84 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.46 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.19 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.01 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.94 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.86 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.72 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.6 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.43 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 91.31 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.26 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.99 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.92 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.71 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 90.55 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.49 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.05 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 89.87 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.86 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 89.72 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 89.6 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.53 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.42 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 89.41 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 89.02 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.84 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.48 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.43 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 88.29 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.12 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.09 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 87.91 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.9 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.48 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.47 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.06 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 86.94 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.93 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.64 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.42 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.41 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 86.34 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.27 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 86.14 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 86.1 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 86.09 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.66 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 85.22 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.32 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.28 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.97 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.88 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.82 | |
| KOG0917 | 338 | consensus Uncharacterized conserved protein [Funct | 83.27 | |
| KOG2391 | 365 | consensus Vacuolar sorting protein/ubiquitin recep | 83.24 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 83.17 | |
| KOG4849 | 498 | consensus mRNA cleavage factor I subunit/CPSF subu | 83.03 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.82 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 82.55 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.12 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 81.67 | |
| KOG2297 | 412 | consensus Predicted translation factor, contains W | 81.34 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 80.44 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 80.44 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-78 Score=715.21 Aligned_cols=631 Identities=21% Similarity=0.309 Sum_probs=560.4
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
...|..++..|++.|++++|+++|++|...+... .+...+..++..|.+.|.+++|..+|+.|.. |+..+|+.++
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~-~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL 444 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLD-MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLM 444 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHH
Confidence 4567888999999999999999999999887543 4456778899999999999999999999864 7999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 315 (877)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.| ++++|.++|++|.+.|+.||..||+.||.+|++.|++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G-~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG-KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 316 EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA--KNISPNVVTYSTMIDGYAKAGRLDDALNMFS 393 (877)
Q Consensus 316 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 393 (877)
++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||.++|++||.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 6789999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 002814 394 EMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPN 473 (877)
Q Consensus 394 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 473 (877)
+|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 474 LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553 (877)
Q Consensus 474 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 553 (877)
..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|+++|++|.+.|+.||..||++++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcch---hh------hhH
Q 002814 554 FGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKE---NR------CRQ 624 (877)
Q Consensus 554 ~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~------~~~ 624 (877)
|++.|++++|.+++.++++....+.. ..++.++.+..+.. .+++...+. .. ...
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~----------------~tynsLIglc~~~y-~ka~~l~~~v~~f~~g~~~~~n~ 826 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNL----------------VMCRCITGLCLRRF-EKACALGEPVVSFDSGRPQIENK 826 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHHHH-HHHhhhhhhhhhhhccccccccc
Confidence 99999999999999988876544320 23444444322211 111111111 00 112
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhccccchHHHHHHHHHHH
Q 002814 625 EILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEV 704 (877)
Q Consensus 625 ~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~ 704 (877)
...+|+.+|++|++.|+.||.+||+.++.++++.+..+.+..++++|.
T Consensus 827 w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-------------------------------- 874 (1060)
T PLN03218 827 WTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-------------------------------- 874 (1060)
T ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc--------------------------------
Confidence 356899999999999999999999999977777777777666666554
Q ss_pred hhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhhchhhhhc---cccchhhccchHHHHHHHHHHHHHHHHhhhc
Q 002814 705 KLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWS---ESCLDLHLMSSGAARAMVHAWLLNIHSIVFE 781 (877)
Q Consensus 705 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~dl~~~s~g~a~~~~~~w~~~~~~~~~~ 781 (877)
..+..++..+|++|++++.+. .++|..++++|...|+.++... ...+|+|.++.|+|.++++.||..+|.....
T Consensus 875 -~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~~~~~~aa~~~l~~wl~~~~~~~~~ 951 (1060)
T PLN03218 875 -ISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEELPVFAAEVYLLTILKGLKHRLAA 951 (1060)
T ss_pred -cCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcccccCceEEEcccCcchhHHHHHHHHHHHHHHHHhc
Confidence 222236678899999987432 3689999999999999987642 3479999999999999999999999999999
Q ss_pred cCCCCCcee-EEeeccccccc-cCchh------hHHHHHHHHhcCCCCcccccCCCceEEechHHHHHHhhcc
Q 002814 782 GHELPKLLS-ILTGWGKHSKV-VGDGA------LRRAVEVLLTGMGAPFWVANCNLGRFISTGPMVASWLRES 846 (877)
Q Consensus 782 ~~~~p~~~~-i~~g~g~h~~~-~~~~~------~~~~i~~~l~~l~~pf~~~~~~~g~~~~~~~~~~~wl~~~ 846 (877)
|.++|.... |.| -+||.+. .|+.. +.++|.++|++|+.||+.+... |||..+|.++++||+..
T Consensus 952 g~~lp~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-g~~~~~~~~~~~wl~~~ 1022 (1060)
T PLN03218 952 GAKLPNVTILLPT-EKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLPYQGSESH-GKLRINGLSLRRWFQPK 1022 (1060)
T ss_pred cCcCCcceeeecc-ccceeeccCCchhHHHHHHHHHHHHHHHHHhCCCCCCCCCC-CeEEeccHHHHHHhccc
Confidence 999999987 345 6677655 45443 3469999999999999999988 99999999999999965
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-74 Score=697.70 Aligned_cols=632 Identities=19% Similarity=0.245 Sum_probs=557.9
Q ss_pred chhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002814 139 DVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFET 218 (877)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 218 (877)
...+..+++.+.. .+...|+.+|.+|++.|++++|+++|++|...+.. ++..+|+.++.+|++.+++..+.+++..
T Consensus 137 ~~~A~~~f~~m~~--~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~--Pd~~t~~~ll~~~~~~~~~~~~~~~~~~ 212 (857)
T PLN03077 137 LVHAWYVFGKMPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR--PDVYTFPCVLRTCGGIPDLARGREVHAH 212 (857)
T ss_pred hHHHHHHHhcCCC--CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CChhHHHHHHHHhCCccchhhHHHHHHH
Confidence 3444555565542 34568999999999999999999999999988743 4567999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCC
Q 002814 219 ALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD 298 (877)
Q Consensus 219 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~ 298 (877)
+.+.|+.+|+.+|++||.+|++.|++++|.++|++|.. ||.++||.+|.+|++.| ++++|+++|++|.+.|+.||
T Consensus 213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g-~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENG-ECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999975 79999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHH
Q 002814 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDG 378 (877)
Q Consensus 299 ~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~ 378 (877)
..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+||+|+.+|++.|++++|.++|++|.. ||.++|+++|.+
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~ 363 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISG 363 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999975 599999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 379 YAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEV 458 (877)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 458 (877)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.++..+||+||++|++.|++++|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002814 459 RRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (877)
Q Consensus 459 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (877)
.++|++|.+ +|..+|+.+|.+|++.|+.++|.++|++|.+ ++.||..||+.++.+|++.|..+++.+++..|.+.
T Consensus 444 ~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~ 518 (857)
T PLN03077 444 LEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518 (857)
T ss_pred HHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh
Confidence 999999975 5889999999999999999999999999986 58999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcc
Q 002814 539 GIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKK 618 (877)
Q Consensus 539 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 618 (877)
|+.+|..++++||++|++.|++++|.+.+++. .++ ...||.++..|++.
T Consensus 519 g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d------------------~~s~n~lI~~~~~~---------- 567 (857)
T PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKD------------------VVSWNILLTGYVAH---------- 567 (857)
T ss_pred CCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCC------------------hhhHHHHHHHHHHc----------
Confidence 99999999999999999999999998887654 111 15789999988853
Q ss_pred hhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CC--cchhHHHHHhhccccch
Q 002814 619 ENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLF---DN--QVYGVAHGLLMGYRDNI 693 (877)
Q Consensus 619 ~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~---~~--~~~~~~~~l~~~~~~~~ 693 (877)
|+.++|+++|++|.+.|+.||.+||+++|++|++.|++++|.++|++|.+. .| ..|..+..++ .+.|+
T Consensus 568 -----G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l--~r~G~ 640 (857)
T PLN03077 568 -----GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL--GRAGK 640 (857)
T ss_pred -----CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH--HhCCC
Confidence 377889999999999999999999999999999999999999999999832 22 2333332222 27899
Q ss_pred HHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhhchhhhhccccchhhccchHHHHHHHHHH--
Q 002814 694 WVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAW-- 771 (877)
Q Consensus 694 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~dl~~~s~g~a~~~~~~w-- 771 (877)
+++|++++++|. ..++..+|++|+.+|...|+.+.|+...++..+..-..... +..++..++....|
T Consensus 641 ~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~--------y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 641 LTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY--------YILLCNLYADAGKWDE 709 (857)
T ss_pred HHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch--------HHHHHHHHHHCCChHH
Confidence 999999999873 34678999999999999999998887766655432211100 11133345666778
Q ss_pred HHHHHHhhhc-c-CCCCCceeEEeeccccccccCchhhHH--HHHHHHhcCCCCcccccCCCceEEechHHHHHHhhccC
Q 002814 772 LLNIHSIVFE-G-HELPKLLSILTGWGKHSKVVGDGALRR--AVEVLLTGMGAPFWVANCNLGRFISTGPMVASWLRESG 847 (877)
Q Consensus 772 ~~~~~~~~~~-~-~~~p~~~~i~~g~g~h~~~~~~~~~~~--~i~~~l~~l~~pf~~~~~~~g~~~~~~~~~~~wl~~~~ 847 (877)
..++|+.|++ | .+.|+++||+++..+|.|+.||.+|++ +|+.+|++|.. .++..|++ ++
T Consensus 710 a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~----------~~~~~g~~-------~~ 772 (857)
T PLN03077 710 VARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYE----------KMKASGLA-------GS 772 (857)
T ss_pred HHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHH----------HHHhCCcC-------CC
Confidence 5788888887 5 469999999999999999999999985 89999999876 66777777 77
Q ss_pred cceEEEe
Q 002814 848 TLKVLVL 854 (877)
Q Consensus 848 ~~~~~~~ 854 (877)
|..++.+
T Consensus 773 ~~~~~~~ 779 (857)
T PLN03077 773 ESSSMDE 779 (857)
T ss_pred cchhccc
Confidence 7766633
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-70 Score=644.59 Aligned_cols=529 Identities=21% Similarity=0.341 Sum_probs=494.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
..|+.+|.+|.+.|++++|+++|++|...+... .+..+|+.++.+|++.++++.|.+++..|.+.|+.||+.+|+.|+.
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~-~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFT-LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 357888999999999999999999998765333 4567999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002814 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 316 (877)
+|++.|++++|.++|++|.+ ||.++||.+|.+|++.| ++++|+++|++|.+.|+.||..||+.++.+|++.|..+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g-~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAG-NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCc-CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999975 89999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (877)
Q Consensus 317 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (877)
.+.+++..+.+.|+.+|..+||+||++|+++|++++|.++|++|.. +|+++||+||.+|++.|++++|+++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 499999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 002814 397 FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLT 476 (877)
Q Consensus 397 ~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 476 (877)
+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.+|..+|++||++|+++|++++|.++|++|.+ ||..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999964 69999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHh
Q 002814 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK-EGIRPNVVTYNSIIDAFG 555 (877)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~ 555 (877)
||+||.+|++.|+.++|.++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999985 699999999999999999
Q ss_pred hcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHH
Q 002814 556 RSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQK 635 (877)
Q Consensus 556 ~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~ 635 (877)
+.|++++| .++|++
T Consensus 474 r~G~~~eA------------------------------------------------------------------~~~~~~ 487 (697)
T PLN03081 474 REGLLDEA------------------------------------------------------------------YAMIRR 487 (697)
T ss_pred hcCCHHHH------------------------------------------------------------------HHHHHH
Confidence 99987755 335555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhccccchHHHHHHHHHHHhhcCCCcchhH
Q 002814 636 MHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAF 715 (877)
Q Consensus 636 m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 715 (877)
| ++.||..+|++|+++|+..|+++.|.++++++. +++| .+...
T Consensus 488 ~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~---------------------------------~~~p-~~~~~ 530 (697)
T PLN03081 488 A---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY---------------------------------GMGP-EKLNN 530 (697)
T ss_pred C---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh---------------------------------CCCC-CCCcc
Confidence 4 588999999999999999999999988887776 4455 45667
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHhhhhhchhhhhccccchhhccchHHHHHHHHHHHHHHHHhhhccCCCCCceeEEeec
Q 002814 716 YNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGW 795 (877)
Q Consensus 716 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~dl~~~s~g~a~~~~~~w~~~~~~~~~~~~~~p~~~~i~~g~ 795 (877)
|+.|+++|.+.|++++|.+++++++++|+.+ .|+++||+.+.
T Consensus 531 y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k--------------------------------------~~g~s~i~~~~ 572 (697)
T PLN03081 531 YVVLLNLYNSSGRQAEAAKVVETLKRKGLSM--------------------------------------HPACTWIEVKK 572 (697)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc--------------------------------------CCCeeEEEECC
Confidence 9999999999999999999999999888765 79999999999
Q ss_pred cccccccCchhhHH--HHHHHHhcCCCCcccccCCCceEEechHHHHHHhhccCcceEEEeccC
Q 002814 796 GKHSKVVGDGALRR--AVEVLLTGMGAPFWVANCNLGRFISTGPMVASWLRESGTLKVLVLHDD 857 (877)
Q Consensus 796 g~h~~~~~~~~~~~--~i~~~l~~l~~pf~~~~~~~g~~~~~~~~~~~wl~~~~~~~~~~~~~~ 857 (877)
.+|.|+.||..|++ +|+..|.+|.. .++..|++ ++|..+++++++
T Consensus 573 ~~~~f~~~d~~h~~~~~i~~~l~~l~~----------~~~~~gy~-------~~~~~~~~~~~~ 619 (697)
T PLN03081 573 QDHSFFSGDRLHPQSREIYQKLDELMK----------EISEYGYV-------AEENELLPDVDE 619 (697)
T ss_pred eEEEEccCCCCCccHHHHHHHHHHHHH----------HHHHcCCC-------CCcchhhccccH
Confidence 99999999999985 89999988876 66777888 888888888775
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-64 Score=593.15 Aligned_cols=523 Identities=20% Similarity=0.311 Sum_probs=447.8
Q ss_pred HHHHHHhccCCchhHHHHHHhhcccCC-Chh--hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHH
Q 002814 128 ALHHVTAFARDDVSLGDILKKFEFKLC-GAD--DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILG 204 (877)
Q Consensus 128 ~l~~l~~~~~~~~~~~~~l~~~~~~~~-~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (877)
++..+.+.++ ...+..+++.+..... .++ .+..++..|.+.|..++|+++|+.|.. ++..+|+.++.+|+
T Consensus 376 ~y~~l~r~G~-l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~------pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 376 AYNRLLRDGR-IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN------PTLSTFNMLMSVCA 448 (1060)
T ss_pred HHHHHHHCcC-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC------CCHHHHHHHHHHHH
Confidence 4444443333 3445566777765443 222 355688999999999999999988753 35679999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHH
Q 002814 205 RLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVV 284 (877)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~ 284 (877)
+.|+++.|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.| ++++|.
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G-~~eeAl 527 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG-QVAKAF 527 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc-CHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 002814 285 EIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVH--RGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (877)
Q Consensus 285 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (877)
++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||.++|++||.+|++.|++++|.++|++|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986 57899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002814 363 KNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTY 442 (877)
Q Consensus 363 ~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 442 (877)
.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|++|++.|++++|.++|++|.+.|+.||..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 443 NALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (877)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 522 (877)
++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHH
Q 002814 523 GLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQII 602 (877)
Q Consensus 523 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (877)
|++++|.++|++|.+.|+.||..+|++++..|.+ .++++....+..+..+.... .. .....+.++
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~-----------~~--~n~w~~~Al 832 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRP-----------QI--ENKWTSWAL 832 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhcccc-----------cc--ccchHHHHH
Confidence 9999999999999999999999999999987643 34554444333332211000 00 001112233
Q ss_pred HHHHHHHHHHhcCCcch-------hhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 002814 603 KVFGQLVAEKAGQGKKE-------NRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFD 675 (877)
Q Consensus 603 ~~~~~~~~~~~g~~~~~-------~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~ 675 (877)
.+|.+|.....-..... ....+....+..++++|...+..|+..+|++|+++|++. .++|..+|++|...+
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 44444432111000000 001125667778888888788999999999999998543 478999999998643
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-64 Score=610.93 Aligned_cols=526 Identities=20% Similarity=0.251 Sum_probs=311.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002814 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (877)
Q Consensus 159 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 238 (877)
++.++..|++.|+++.|+++|+.|.. .+..+|+.++.+|++.|++++|.++|++|...|+.||.++|+.+++++
T Consensus 124 ~n~li~~~~~~g~~~~A~~~f~~m~~------~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~ 197 (857)
T PLN03077 124 GNAMLSMFVRFGELVHAWYVFGKMPE------RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTC 197 (857)
T ss_pred HHHHHHHHHhCCChHHHHHHHhcCCC------CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHh
Confidence 34455555555555555555554432 122345555555555555555555555555555555555555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 002814 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAA 318 (877)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 318 (877)
++.++++.+.+++..|.+.|+.||..+||.+|.+|++.| ++++|.++|++|. .+|..+||++|.+|++.|++++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g-~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eA 272 (857)
T PLN03077 198 GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG-DVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEG 272 (857)
T ss_pred CCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC-CHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHH
Confidence 555555555555555555555555555555555555555 5555555555553 23455555555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 319 RNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (877)
Q Consensus 319 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (877)
.++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.
T Consensus 273 l~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-- 350 (857)
T PLN03077 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-- 350 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--
Confidence 555555555555555555555555555555555555555555555555555555555555555555555555555553
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002814 399 GIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYS 478 (877)
Q Consensus 399 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 478 (877)
.||.++|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+
T Consensus 351 --~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n 428 (857)
T PLN03077 351 --TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428 (857)
T ss_pred --CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHH
Confidence 344555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 002814 479 TLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSA 558 (877)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 558 (877)
.||.+|++.|++++|.++|++|.+ +|.++|+.+|.+|++.|+.++|+.+|++|.. ++.||..||++++.+|++.|
T Consensus 429 ~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 429 ALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIG 503 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhc
Confidence 555555555555555555555532 3455555555555555555555555555543 35555555555555555555
Q ss_pred ChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHH
Q 002814 559 TTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHK 638 (877)
Q Consensus 559 ~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~ 638 (877)
+++++.+++..+++..... .....+.++.+|.+. |++++|..+|++|
T Consensus 504 ~l~~~~~i~~~~~~~g~~~----------------~~~~~naLi~~y~k~---------------G~~~~A~~~f~~~-- 550 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGF----------------DGFLPNALLDLYVRC---------------GRMNYAWNQFNSH-- 550 (857)
T ss_pred hHHHhHHHHHHHHHhCCCc----------------cceechHHHHHHHHc---------------CCHHHHHHHHHhc--
Confidence 5555555555444432221 113456677777653 4788899999887
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHH-HHhhcc-ccchHHHHHHHHHHHh-hcCCCcchhH
Q 002814 639 LKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAH-GLLMGY-RDNIWVQALSLFDEVK-LMDSSTASAF 715 (877)
Q Consensus 639 ~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~-~l~~~~-~~~~~~~A~~~~~~~~-~~~~~~~~~~ 715 (877)
.||.++|++|+.+|++.|+.++|.++|++|.+.+.....+++ .++.++ +.|.+++|.++|++|. +.+..++..+
T Consensus 551 ---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 551 ---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred ---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 689999999999999999999999999999865433222322 334445 6889999999999998 5566678889
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHhh
Q 002814 716 YNALTDMLWHFGQKRGAQLVVLEGK 740 (877)
Q Consensus 716 ~~~l~~~~~~~g~~~~A~~~~~~~~ 740 (877)
|++++++|.+.|++++|.++++++.
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 9999999999999999999998873
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-58 Score=541.62 Aligned_cols=464 Identities=20% Similarity=0.318 Sum_probs=420.4
Q ss_pred HHHHHHHHHhccCCchhHHHHHHhhccc---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHH
Q 002814 125 AEEALHHVTAFARDDVSLGDILKKFEFK---LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMIS 201 (877)
Q Consensus 125 ~~~~l~~l~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (877)
+...+..+...++..+ +..++..+... ..+...|..++.+|++.++++.|.+++..+.+.+.. ++..+++.++.
T Consensus 90 ~~~~i~~l~~~g~~~~-Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~--~~~~~~n~Li~ 166 (697)
T PLN03081 90 LCSQIEKLVACGRHRE-ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE--PDQYMMNRVLL 166 (697)
T ss_pred HHHHHHHHHcCCCHHH-HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--cchHHHHHHHH
Confidence 3344444444444333 33444444322 234567889999999999999999999999998854 35679999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH
Q 002814 202 ILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK 281 (877)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 281 (877)
+|++.|++++|.++|++|.+ ||+.+|+++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.| ..+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~-~~~ 241 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG-SAR 241 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC-cHH
Confidence 99999999999999999964 6999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002814 282 HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMP 361 (877)
Q Consensus 282 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (877)
.+.+++..+.+.|+.+|..+|+.|+++|++.|++++|.++|++|.+ +|.++||+||.+|++.|++++|+++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999965 589999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 002814 362 AKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVT 441 (877)
Q Consensus 362 ~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 441 (877)
+.|+.||..||++++.+|++.|++++|.+++.+|.+.|+.+|..+|++||++|++.|++++|.++|++|. .+|..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 579999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 002814 442 YNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ-AGLKADVVLYSALIDALC 520 (877)
Q Consensus 442 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~ 520 (877)
||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 699999999999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhH
Q 002814 521 KNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQ 600 (877)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (877)
+.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..
T Consensus 474 r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~----------------------------------- 515 (697)
T PLN03081 474 REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL----------------------------------- 515 (697)
T ss_pred hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH-----------------------------------
Confidence 999999999999876 578999999999999999998876543
Q ss_pred HHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 002814 601 IIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFD 675 (877)
Q Consensus 601 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~ 675 (877)
+++++.+ +.|+ ..+|+.|+++|++.|++++|.+++++|.+.+
T Consensus 516 -------------------------------~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 516 -------------------------------AAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred -------------------------------HHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 4444443 5674 5689999999999999999999999998643
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=342.43 Aligned_cols=565 Identities=14% Similarity=0.081 Sum_probs=323.1
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 002814 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFS 232 (877)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 232 (877)
+..+..+..+...+.+.|++++|+..+..++... +.+..++..+...+.+.|++++|.++|+++.+... .+...+.
T Consensus 326 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 401 (899)
T TIGR02917 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD---PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAART 401 (899)
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 3344445556666666777777777777666553 33344566666677777777777777777665533 2455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 002814 233 ALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG 312 (877)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 312 (877)
.+...+...|++++|++.|+++.+.... +...+..++..+.+.| ++++|.++++++.... +.+..++..+...+...
T Consensus 402 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 478 (899)
T TIGR02917 402 QLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSG-QFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGK 478 (899)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcC-CHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhC
Confidence 6666666777777777777766654322 2334445555666666 6677777766666542 33555666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 313 GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMF 392 (877)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 392 (877)
|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++...+. .+..++..+...|.+.|+.++|..++
T Consensus 479 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 556 (899)
T TIGR02917 479 GDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWL 556 (899)
T ss_pred CCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777776666543 23455566666666666777777777666665432 25566666666666666777776666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002814 393 SEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP 472 (877)
Q Consensus 393 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 472 (877)
+++...+ +.+...+..++..|.+.|++++|..+++.+.+.. +.+..+|..+...|.+.|++++|...|+++.+.. +.
T Consensus 557 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 633 (899)
T TIGR02917 557 EKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PD 633 (899)
T ss_pred HHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 6665553 3445556666666666666777766666666543 4456666666666666666777766666666542 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 552 (877)
+...+..+..+|.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|.++++.+.+.+ ..+...+..+..
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 711 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGD 711 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHH
Confidence 45566666666666666666666666666543 2345666666666666666666666666666543 234455666666
Q ss_pred HHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCc------chhhhhHhH
Q 002814 553 AFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGK------KENRCRQEI 626 (877)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~ 626 (877)
.+.+.|++++|+..+.+++...++...... +..... ..+.+...+..+.+.......... .-+...++.
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-l~~~~~----~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALL----ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCchHHHH-HHHHHH----HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 666666666666666666665554311100 000000 001111111111111100000000 001112355
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHh
Q 002814 627 LCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVK 705 (877)
Q Consensus 627 ~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~ 705 (877)
++|++.|+++.+.. ..+..+++.++..+...|+ ++|..+++++....|++......+...+ ..|++++|.+++++++
T Consensus 787 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 787 DKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55666666665532 1244455566666666666 5566666666555555544444433322 4556666666666666
Q ss_pred hcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHh
Q 002814 706 LMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEG 739 (877)
Q Consensus 706 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 739 (877)
+.+| .+..++..++++|++.|++++|.++++++
T Consensus 865 ~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 865 NIAP-EAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred hhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6665 35556666666666666666666665554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=331.17 Aligned_cols=588 Identities=13% Similarity=0.041 Sum_probs=472.1
Q ss_pred cCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHH
Q 002814 136 ARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNI 215 (877)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 215 (877)
+..+.++..+.+.+...+.....+..+...+...|++++|...|..++... +.+...+..++..+.+.|++++|...
T Consensus 275 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~~~~g~~~~A~~~ 351 (899)
T TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA---PNSHQARRLLASIQLRLGRVDEAIAT 351 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 444444444444444444344455566777889999999999999999875 34456778889999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Q 002814 216 FETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGV 295 (877)
Q Consensus 216 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~ 295 (877)
++.+..... .+...+..+...+.+.|++++|.++|+++.+.... +...+..+...+...| ++++|++.|+++.+...
T Consensus 352 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~ 428 (899)
T TIGR02917 352 LSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQG-DPSEAIADLETAAQLDP 428 (899)
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhhCC
Confidence 999987654 37889999999999999999999999999875433 6677888888899999 99999999999988653
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHH
Q 002814 296 QPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTM 375 (877)
Q Consensus 296 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 375 (877)
. .......++..+.+.|++++|..+++.+.+. .+.+..+++.+...|...|++++|.+.|+++.+... .+...+..+
T Consensus 429 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 505 (899)
T TIGR02917 429 E-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANL 505 (899)
T ss_pred c-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHH
Confidence 3 3455667788999999999999999999875 345788999999999999999999999999987643 367788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 002814 376 IDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKY 455 (877)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 455 (877)
...+...|++++|.+.|+++.... +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..|.+.|++
T Consensus 506 a~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQL 583 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCH
Confidence 999999999999999999998875 5578889999999999999999999999998776 66778889999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002814 456 DEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEM 535 (877)
Q Consensus 456 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 535 (877)
++|..+++++.+. .+.+..+|..+..+|.+.|++++|...|+++.+.. +.+...+..+..+|.+.|++++|..+|+++
T Consensus 584 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 584 KKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999876 35578899999999999999999999999998865 347788999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcC
Q 002814 536 TKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQ 615 (877)
Q Consensus 536 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 615 (877)
.+.. +.+..++..+...+...|++++|+++++...+..+.........+..... .+.++..+..|.+........
T Consensus 662 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 736 (899)
T TIGR02917 662 LELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLR----QKDYPAAIQAYRKALKRAPSS 736 (899)
T ss_pred HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCc
Confidence 8753 33567999999999999999999999999888877655433333222211 145566666665543221111
Q ss_pred Cc-----chhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-
Q 002814 616 GK-----KENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY- 689 (877)
Q Consensus 616 ~~-----~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~- 689 (877)
.. ......|+.++|++.++++.+.. ..+..++..+...|.+.|+.++|.+.|+++.+.+|++..+..++...+
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL 815 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 00 00123357788888888887732 236667888888888889999999999998888888777777665544
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhhc
Q 002814 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (877)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (877)
..|+ .+|+.+++++++..| .+..+++.++.+|...|++++|..+++++.+.+.
T Consensus 816 ~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred hcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4555 779999999888888 6778888899999999999999999888887654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-24 Score=265.65 Aligned_cols=435 Identities=14% Similarity=0.062 Sum_probs=246.6
Q ss_pred ccCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHH-------------HHHHHHH
Q 002814 135 FARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGK-------------LASAMIS 201 (877)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------------~~~~l~~ 201 (877)
..+++.+.+.+.+.+...+.+++.+..++..+.+.|+.++|.+.++++.+..+..+.-.. ....++.
T Consensus 41 ~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ 120 (1157)
T PRK11447 41 THREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQAR 120 (1157)
T ss_pred hCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHH
Confidence 444444444444555666777888888899999999999999999999888643221110 1133455
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH
Q 002814 202 ILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK 281 (877)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 281 (877)
.+.+.|++++|.+.|+.+.+...+........+.......|+.++|++.|+++.+..+. +...+..+...+...| +.+
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g-~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSG-RRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccC-CHH
Confidence 78889999999999999987643321212212222233468999999999999886433 5667778888888888 899
Q ss_pred HHHHHHHHHHHCCCCC----------------CH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 282 HVVEIFDDMLRNGVQP----------------DR---ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLD 342 (877)
Q Consensus 282 ~a~~~~~~m~~~g~~p----------------~~---~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 342 (877)
+|++.++++....... +. ..+...+..+-.....+.|...++.+......|+.. ...+..
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~ 277 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGL 277 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHH
Confidence 9999999886542110 00 001111111111122334444444433322122211 122344
Q ss_pred HHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH------------HH
Q 002814 343 AICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGL-DRVSY------------NT 409 (877)
Q Consensus 343 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~------------~~ 409 (877)
.+...|++++|+..|++..+... -+...+..+...|.+.|++++|+..|++..+..-.. +...+ ..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 55566666666666666665432 255666666666666666666666666666542111 11111 11
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002814 410 VLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGL 489 (877)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 489 (877)
....+.+.|++++|+..|+++.+.. +.+...+..+...|...|++++|++.|+++++.. +.+...+..+...|. .++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcC
Confidence 2334556666666666666666554 3455556666666666666666766666666542 223444555555543 345
Q ss_pred HHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCh
Q 002814 490 YKEAMQIFREFKQAGL--------KADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSATT 560 (877)
Q Consensus 490 ~~~A~~~~~~m~~~g~--------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~ 560 (877)
.++|..+++.+..... ......+..+...+...|++++|++.|++.++. .|+ ...+..+...|.+.|++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 5666655554322100 001122334455555666666666666666653 233 33555566666666666
Q ss_pred hhhHHHHHHHhhhhhhhh
Q 002814 561 ECTVDDVERDLGKQKESA 578 (877)
Q Consensus 561 ~~a~~~~~~~l~~~~~~~ 578 (877)
++|+..++++++..|+..
T Consensus 512 ~~A~~~l~~al~~~P~~~ 529 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDP 529 (1157)
T ss_pred HHHHHHHHHHHHcCCCCH
Confidence 666666666666555443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-23 Score=256.99 Aligned_cols=564 Identities=12% Similarity=0.053 Sum_probs=369.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
..+.+...|++++|++.|+.++...+ +................|+.++|++.|+++.+..+. +...+..+...+...
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~p--~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGAP--PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCCC--CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHcc
Confidence 45568889999999999999987752 221111111222233569999999999999987543 788899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC--HH-----------------HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002814 242 GYCQEAISVFNSMKRYNLKPN--LV-----------------TYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITF 302 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p~--~~-----------------~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~ 302 (877)
|+.++|++.|+++........ .. .+...+..+-... ..+.|...+.++......|+...
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~-~~~~A~~~L~~~~~~~~dp~~~~- 272 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGD-SVAAARSQLAEQQKQLADPAFRA- 272 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCch-HHHHHHHHHHHHHHhccCcchHH-
Confidence 999999999999875321100 01 1111122122222 24455555555544322333221
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCC-CHHHHH--------
Q 002814 303 NSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISP-NVVTYS-------- 373 (877)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~-------- 373 (877)
..+...+...|++++|+..|++.++.. +.+...+..|..+|.+.|++++|++.|++..+..... +...|.
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 233556777889999999999888764 3367888888889999999999999998887653221 111121
Q ss_pred ----HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 374 ----TMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY 449 (877)
Q Consensus 374 ----~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 449 (877)
.+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+...|
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 22446678889999999999888774 4456677778888889999999999999888765 44566676676666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 450 GKQGKYDEVRRMFEQMKADCVS--------PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK 521 (877)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~g~~--------p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 521 (877)
. .++.++|..+++.+...... -....+..+...+...|++++|++.|++.++.... +...+..+...|.+
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQ 507 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4 45678888877665332100 01223455667777888888888888888876532 56677778888888
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh--hhhhh------hhccCchhhh
Q 002814 522 NGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES--ANLDA------MCSQDDKDVQ 592 (877)
Q Consensus 522 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~--~~~~~------~~~~~~~~~~ 592 (877)
.|++++|+..|+++.+. .| +...+..+...+...|+.++|+..+++........ ..+.. .+......
T Consensus 508 ~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l-- 583 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL-- 583 (1157)
T ss_pred cCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH--
Confidence 88888888888888764 23 33444445555667788888877766543211100 00000 00000000
Q ss_pred hhccchhHHHHHHHHHHHHHhcC--CcchhhhhHhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHH
Q 002814 593 EAGRTDNQIIKVFGQLVAEKAGQ--GKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLE 669 (877)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~ 669 (877)
...+.++.++..+.......... ...-+...+++++|++.|++.++ ..| |...+..++.++...|+.++|.+.++
T Consensus 584 ~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 584 RDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 01122333333332100000000 00002234588999999999988 456 56678899999999999999999999
Q ss_pred HHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCc-----chhHHHHHHHHHHhcCchhhHHHHHHHhhh
Q 002814 670 ELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSST-----ASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (877)
Q Consensus 670 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (877)
.+.+.+|.+......+...+ ..|++++|.++++++++..+.. +..++..++.++...|++++|...+++++.
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99888777666555544333 6789999999999998876532 234677789999999999999999988864
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-21 Score=230.06 Aligned_cols=547 Identities=9% Similarity=-0.004 Sum_probs=348.8
Q ss_pred cCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHH
Q 002814 136 ARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNI 215 (877)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 215 (877)
+..++++..+-+.+...+.++..+..+.+.|...|++++|+..++++++.. +.+...+..+. ..++.++|..+
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld---P~n~~~~~~La----~i~~~~kA~~~ 130 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH---PGDARLERSLA----AIPVEVKSVTT 130 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHHHHH----HhccChhHHHH
Confidence 344445555555566666666677777777777788888888777777764 34444444332 22777777778
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHcCCCCHHHHHHH
Q 002814 216 FETALNEGYGNTVYAFSALISA--------YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV-IDACGKGGVDFKHVVEI 286 (877)
Q Consensus 216 ~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~~a~~~ 286 (877)
|+++.+..+. +..++..+... |.+.++..+|++ .......|+..+.... ...|.+.+ ++++|+++
T Consensus 131 ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~-dw~~Ai~l 204 (987)
T PRK09782 131 VEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLK-QWSQADTL 204 (987)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHh-CHHHHHHH
Confidence 8777776443 45555555554 555544444443 3332334445444444 67777777 77778888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCC
Q 002814 287 FDDMLRNGVQPDRITFNSLLAVCSR-GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNI 365 (877)
Q Consensus 287 ~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 365 (877)
+.++.+.+.. +..-...|..+|.. .++ +++..+++.. +..|...+..+++.|.+.|+.++|.++++++.....
T Consensus 205 L~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 205 YNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 8888777543 44445556666666 355 6666665432 224677777788888888888888888777765422
Q ss_pred C-CCHHHHHH------------------------------HHHHHHHcCCHHHHHHHHH---------------------
Q 002814 366 S-PNVVTYST------------------------------MIDGYAKAGRLDDALNMFS--------------------- 393 (877)
Q Consensus 366 ~-pd~~~~~~------------------------------li~~~~~~g~~~~A~~~~~--------------------- 393 (877)
. |...+|-- ++..+.+.++++-+.++..
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence 2 33333311 1333444455544433321
Q ss_pred --------HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHcCC---HHHHHH
Q 002814 394 --------EMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS-G-IRKDAVTYNALLGGYGKQGK---YDEVRR 460 (877)
Q Consensus 394 --------~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~ 460 (877)
.|.... +-+.....-+.-...+.|+.++|..+|+..... + -..+.....-++..|.+.+. ..++..
T Consensus 359 ~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 359 AEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 000000 001111222222334567777777777776542 1 12344445566677766655 223322
Q ss_pred H-------------------------HHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002814 461 M-------------------------FEQMKADCVSP--NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYS 513 (877)
Q Consensus 461 ~-------------------------~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 513 (877)
+ +...... .++ +...|..+..++.. ++.++|...|.+..... |+.....
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L 513 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHR 513 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHH
Confidence 2 1111111 123 56677777777776 78888888777777653 5554444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhh
Q 002814 514 ALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQE 593 (877)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 593 (877)
.+...+...|++++|+..|+++... .|+...+..+..++.+.|+.++|...+.+++...++...+...
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~---------- 581 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWW---------- 581 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHH----------
Confidence 4455556888899999888887653 4555566677777888888888888888888766543211110
Q ss_pred hccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 002814 594 AGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRL 673 (877)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~ 673 (877)
+.... ...|++++|+..|++.++ +.|+...+..+..++.+.|+.++|...|+++..
T Consensus 582 -------La~~l---------------~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~ 637 (987)
T PRK09782 582 -------LHAQR---------------YIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE 637 (987)
T ss_pred -------HHHHH---------------HhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00000 011378889999999987 668888899999999999999999999999999
Q ss_pred cCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 674 FDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 674 ~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
.+|++..+..++...+ ..|++++|+..++++++.+| .+..++..++.+|...|++++|...++++.+..
T Consensus 638 l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 638 LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999988877776544 67899999999999999999 788999999999999999999999998887654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-22 Score=211.00 Aligned_cols=460 Identities=16% Similarity=0.177 Sum_probs=337.3
Q ss_pred HHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 002814 143 GDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE 222 (877)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (877)
..+++++.....+.+....+...+-+.|++.+|.+.....-+++.... ...-.+-..+....+.+...+--...++.
T Consensus 35 ~~v~qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~---~~llll~ai~~q~~r~d~s~a~~~~a~r~ 111 (966)
T KOG4626|consen 35 SSVLQQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNT---ERLLLLSAIFFQGSRLDKSSAGSLLAIRK 111 (966)
T ss_pred hHHHHHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcc---cceeeehhhhhcccchhhhhhhhhhhhhc
Confidence 345566555555556666777788889999999998766655543222 22333445566777777766655555554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002814 223 GYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITF 302 (877)
Q Consensus 223 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~ 302 (877)
.. .-..+|..+.+.+...|++++|+.+++.+.+...+ .+..|..+..++...| +.+.|.+.|.+.++. .|+....
T Consensus 112 ~~-q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~-~~~~a~~~~~~alql--nP~l~ca 186 (966)
T KOG4626|consen 112 NP-QGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQG-DLELAVQCFFEALQL--NPDLYCA 186 (966)
T ss_pred cc-hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcC-CCcccHHHHHHHHhc--Ccchhhh
Confidence 32 24678999999999999999999999999985433 5788999999999999 999999999999885 5665543
Q ss_pred -HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCC-HHHHHHHHHHHH
Q 002814 303 -NSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTYSTMIDGYA 380 (877)
Q Consensus 303 -~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~ 380 (877)
+.+.......|++++|...|.+.++... --.+.|+.|...+...|++..|++.|++..+. .|+ ...|-.|...|.
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~k 263 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYK 263 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHH
Confidence 3445556668999999999998887532 23678888999999999999999999988875 333 467888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 381 KAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRR 460 (877)
Q Consensus 381 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 460 (877)
..+.++.|+..|.+..... +...+.+..+...|...|.+|.|+..|++.++.. +.-...|+.|..++-..|++.+|.+
T Consensus 264 e~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred HHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHH
Confidence 8888899888888877653 3345777888888888889999999988888764 3347788888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 002814 461 MFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGI 540 (877)
Q Consensus 461 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 540 (877)
.|.+.+... .--....+.|...|...|++++|..+|....+-... -...++.|...|-+.|++++|+..|++.+. +
T Consensus 342 cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I 417 (966)
T KOG4626|consen 342 CYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--I 417 (966)
T ss_pred HHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--c
Confidence 888888762 334677788888888888888888888888774311 345677888888888888888888888876 5
Q ss_pred CCCHH-HHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcch
Q 002814 541 RPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKE 619 (877)
Q Consensus 541 ~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 619 (877)
.|+.. .|+.+...|-..|+.+.|++.+.+++..+|.-
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~------------------------------------------ 455 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF------------------------------------------ 455 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH------------------------------------------
Confidence 67654 56666555555555555555544444433321
Q ss_pred hhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHh
Q 002814 620 NRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLL 686 (877)
Q Consensus 620 ~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~ 686 (877)
...++.|.+.|-..|++.+|+..|+++++++|+......+++
T Consensus 456 -------------------------AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 456 -------------------------AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred -------------------------HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 223566777777778888888888777777776665555553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-20 Score=218.06 Aligned_cols=551 Identities=12% Similarity=0.017 Sum_probs=386.7
Q ss_pred HHHHhccCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHH-------
Q 002814 130 HHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISI------- 202 (877)
Q Consensus 130 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~------- 202 (877)
..++..++.+.+...+-+.+...+.+...+..+ +..+++.+|..+|++++... |.+..++..+...
T Consensus 86 ~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L----a~i~~~~kA~~~ye~l~~~~---P~n~~~~~~la~~~~~~~~l 158 (987)
T PRK09782 86 EAYRHFGHDDRARLLLEDQLKRHPGDARLERSL----AAIPVEVKSVTTVEELLAQQ---KACDAVPTLRCRSEVGQNAL 158 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH----HHhccChhHHHHHHHHHHhC---CCChhHHHHHHHHhhccchh
Confidence 334555666666666666666655433333333 22289999999999999986 4444566555555
Q ss_pred -HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-CCCC
Q 002814 203 -LGRLGKVDLAKNIFETALNEGYGNTVYAFSAL-ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK-GGVD 279 (877)
Q Consensus 203 -~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~ 279 (877)
|.+. ++|.+.++ .......|+..+.... .+.|.+.|++++|++++.++.+.++. +......+..+|.. .+ +
T Consensus 159 ~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~-~ 232 (987)
T PRK09782 159 RLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQL-D 232 (987)
T ss_pred hhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhC-H
Confidence 5555 55555555 3333334445544444 89999999999999999999997654 55556777778887 46 5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHH-------------------
Q 002814 280 FKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGID-QDIFTYNT------------------- 339 (877)
Q Consensus 280 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~------------------- 339 (877)
+++..+++.. ++-|...+..++..|.+.|+.++|.++++++...-.. |...+|.-
T Consensus 233 -~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~ 307 (987)
T PRK09782 233 -DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQ 307 (987)
T ss_pred -HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhh
Confidence 7787776542 3358888999999999999999999999998664322 33343321
Q ss_pred -----------HHHHHHHcCCHHHHHHHHHHchhC--------CC--------------------CCCHHHHHHHHHHHH
Q 002814 340 -----------LLDAICKGAQMDLAFEIMAEMPAK--------NI--------------------SPNVVTYSTMIDGYA 380 (877)
Q Consensus 340 -----------li~~~~~~g~~~~A~~~~~~m~~~--------g~--------------------~pd~~~~~~li~~~~ 380 (877)
++..+.+.++++.+.++.+.-... +. +-+....-.+.-...
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~ 387 (987)
T PRK09782 308 FADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLM 387 (987)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 144455666666666553311100 00 112222333334456
Q ss_pred HcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCC---HHHHHHH----------------------H---HHH
Q 002814 381 KAGRLDDALNMFSEMKFL--GIGLDRVSYNTVLSIYAKLGR---FEEALLV----------------------C---KEM 430 (877)
Q Consensus 381 ~~g~~~~A~~~~~~m~~~--g~~pd~~~~~~li~~~~~~g~---~~~A~~~----------------------~---~~m 430 (877)
+.|+.++|..+|+..... +...+.....-|+..|.+.+. ..++..+ + ...
T Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 467 (987)
T PRK09782 388 QNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRL 467 (987)
T ss_pred HcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHh
Confidence 789999999999988762 123345555677787777765 2333222 1 122
Q ss_pred HHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002814 431 ESSGIRK--DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD 508 (877)
Q Consensus 431 ~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 508 (877)
.... +. +...|..+..++.. ++.++|...|.+.... .|+......+...+...|++++|...|+++... .|+
T Consensus 468 l~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~ 541 (987)
T PRK09782 468 LGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMS 541 (987)
T ss_pred cccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCC
Confidence 2111 34 67788888888876 8999999988888775 466555444555567899999999999998664 345
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccC
Q 002814 509 VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQD 587 (877)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 587 (877)
...+..+..++.+.|+.++|...|++.++.. |+.. .+..+...+.+.|++++|+..++++++..|+ ...
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a------- 611 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANA------- 611 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHH-------
Confidence 5567777888999999999999999998864 4443 4444455556779999999999999998875 211
Q ss_pred chhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHH
Q 002814 588 DKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASM 666 (877)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~ 666 (877)
+..+..++.+ .+++++|+..|++..+ ..|+ ...+..+..++...|+.++|++
T Consensus 612 ----------~~~LA~~l~~---------------lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 612 ----------YVARATIYRQ---------------RHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred ----------HHHHHHHHHH---------------CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 1222222222 2478899999999988 5675 4567888889999999999999
Q ss_pred HHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhh
Q 002814 667 LLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (877)
.|+.+.+.+|++..+..++...+ ..|++++|+..++++++.+| .+..+....++++....++++|.+-+..+...
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P-~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID-NQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999998888886665 78999999999999999999 78889999999999999999998877665443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-21 Score=204.13 Aligned_cols=433 Identities=16% Similarity=0.153 Sum_probs=360.8
Q ss_pred HHHHHHHhccCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhc
Q 002814 127 EALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRL 206 (877)
Q Consensus 127 ~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (877)
++.+.++..+....+.......+..++.+.+....+-..+.+..+++.....-..+++.. +....+|+.+.+.+...
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~---~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN---PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc---chHHHHHHHHHHHHHHh
Confidence 444555655555555555555555555555555556667777788888777777777765 44567899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCCHHHHHH
Q 002814 207 GKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA-CGKGGVDFKHVVE 285 (877)
Q Consensus 207 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~~a~~ 285 (877)
|++++|+.+|+.+++.... .+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+.. ....| ++++|..
T Consensus 130 g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~G-rl~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEG-RLEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhc-ccchhHH
Confidence 9999999999999987543 689999999999999999999999999987 45777665544443 44567 8999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHchhCC
Q 002814 286 IFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD-IFTYNTLLDAICKGAQMDLAFEIMAEMPAKN 364 (877)
Q Consensus 286 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 364 (877)
.|.+.++.... -.+.|+.|.-.+...|+...|++.|++.++.. |+ ...|..|...|...+.++.|+..|.+.....
T Consensus 206 cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 206 CYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 99999876321 34678999999999999999999999999864 44 6789999999999999999999999887653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002814 365 ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD-RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYN 443 (877)
Q Consensus 365 ~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 443 (877)
. -..+.+..|...|...|.+|.|+..|++.++. .|+ ...|+.|..++-..|++.+|...|.+.+... +......+
T Consensus 283 p-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 283 P-NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred C-cchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence 2 24678888899999999999999999999987 555 6789999999999999999999999998764 45678889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 002814 444 ALLGGYGKQGKYDEVRRMFEQMKADCVSPN-LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD-VVLYSALIDALCK 521 (877)
Q Consensus 444 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 521 (877)
.|...|...|.+++|.++|....+- .|. ....+.|...|-+.|++++|+..|++.++. +|+ ...|+.+...|-.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHH
Confidence 9999999999999999999999875 444 567899999999999999999999999884 455 5689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhh
Q 002814 522 NGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKESAN 579 (877)
Q Consensus 522 ~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~ 579 (877)
.|+++.|+..+.+.+. +.|... .++.|...|-..|++.+|++.++.+|++.|+.++
T Consensus 435 ~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred hhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 9999999999999988 567754 8899999999999999999999999999998764
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-19 Score=194.14 Aligned_cols=557 Identities=14% Similarity=0.113 Sum_probs=398.2
Q ss_pred hHHHHHHHH--HccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 158 DYTFLLREL--GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 158 ~~~~ll~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
....+.+++ ...++|..|+.+|..++...+....++ ...+..++.++|+.+.|+..|.+++...+ -++.++-.|.
T Consensus 164 il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~ 240 (1018)
T KOG2002|consen 164 ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALG 240 (1018)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHH
Confidence 344455555 357899999999999988876655553 34566788899999999999999998754 2444444443
Q ss_pred HHHH---hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHH
Q 002814 236 SAYG---RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ--PDRITFNSLLAVCS 310 (877)
Q Consensus 236 ~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~--p~~~t~~~ll~~~~ 310 (877)
-.-. ....+..++.++...-..+.. |.+..+.|.+.|.-.| ++..+..+...++..... .-...|..+.++|-
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~-dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKK-DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcc-cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 3222 234566777777777654433 6778888888888888 999999999999875321 11245778899999
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcC----CHH
Q 002814 311 RGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAG----RLD 386 (877)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g----~~~ 386 (877)
..|++++|..+|.+..+..-.-.+..+.-|..+|.+.|+++.+...|+.+.+.. +-+..|...|...|...+ ..+
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d 397 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRD 397 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHH
Confidence 999999999999888776422224556678899999999999999999998763 336678888888887775 567
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 387 DALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKE----MESSGIRKDAVTYNALLGGYGKQGKYDEVRRMF 462 (877)
Q Consensus 387 ~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 462 (877)
+|..++.+..+.- +.|...|..+...+....-+. ++..|.. +...+-.+.....|.+...+...|++++|...|
T Consensus 398 ~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 398 KASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF 475 (1018)
T ss_pred HHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence 8888888877764 567778888777776544433 3666654 344555678899999999999999999999999
Q ss_pred HHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCChHHHHHHH
Q 002814 463 EQMKAD---CVSPNL------LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVV-LYSALIDALCKNGLVESAVSLL 532 (877)
Q Consensus 463 ~~m~~~---g~~p~~------~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~ 532 (877)
.+.+.. ...+|. .+--.+...+-..++++.|.+.|..+.+.. |..+ .|..++...-..+...+|...+
T Consensus 476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred HHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 998765 122333 222235566667789999999999998763 4443 3333433333457788999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHH
Q 002814 533 DEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEK 612 (877)
Q Consensus 533 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (877)
++..+.. .-|...++.+...+.+..++..|.+-++..+.......+.+..+..+++.. ..+
T Consensus 554 k~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~--------------~~l---- 614 (1018)
T KOG2002|consen 554 KDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI--------------QAL---- 614 (1018)
T ss_pred HHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH--------------HHh----
Confidence 9988652 345566666666888888887777766655554333222233322222110 000
Q ss_pred hcCCcchhhhhHhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-c
Q 002814 613 AGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-R 690 (877)
Q Consensus 613 ~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~ 690 (877)
..........++.+.+|+++|.+.++ ..| |...-|.++-.++..|++.+|+.+|..+++.-.+...++.|+...| .
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE 692 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH
Confidence 00111112345688899999999988 556 7888899999999999999999999999876555556666665444 6
Q ss_pred cchHHHHHHHHHHHhh-cCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhhch
Q 002814 691 DNIWVQALSLFDEVKL-MDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVW 745 (877)
Q Consensus 691 ~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 745 (877)
.|+|-.|+++|+.+.+ ...+++..+..+|+.++...|++.+|.+....++.....
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 8899999999999876 455678999999999999999999999998887765443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-18 Score=201.64 Aligned_cols=253 Identities=13% Similarity=0.061 Sum_probs=171.2
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002814 417 LGRFEEALLVCKEMESSG--IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAM 494 (877)
Q Consensus 417 ~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 494 (877)
.+++++|...|++..+.+ .+.+...|+.+...+...|++++|+..|++.++.. +-+...|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 356777777777776543 12234556666677777777777777777776642 223556667777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCChhhhHHHHHHHhhh
Q 002814 495 QIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (877)
Q Consensus 495 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~l~~ 573 (877)
..|+++++.. +.+...|..+...+...|++++|+..|++.++. .|+ ...+..+..++.+.|++++|+.
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~-------- 454 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMA-------- 454 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHH--------
Confidence 7777776654 235667777777777777777777777777764 343 3455555666666665555444
Q ss_pred hhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 002814 574 QKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAIL 652 (877)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll 652 (877)
.|++.+. ..| +...++.++
T Consensus 455 ----------------------------------------------------------~~~~al~--~~P~~~~~~~~lg 474 (615)
T TIGR00990 455 ----------------------------------------------------------TFRRCKK--NFPEAPDVYNYYG 474 (615)
T ss_pred ----------------------------------------------------------HHHHHHH--hCCCChHHHHHHH
Confidence 4444333 234 344566677
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCcchhHHHH-------Hhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 002814 653 NACSRCNSFEDASMLLEELRLFDNQVYGVAHG-------LLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLW 724 (877)
Q Consensus 653 ~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~-------l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 724 (877)
.++...|++++|.+.|+.+...+|.......+ .+..+ ..+++++|+++++++++++| .+...+..|++++.
T Consensus 475 ~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~ 553 (615)
T TIGR00990 475 ELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLL 553 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHH
Confidence 77778888888888888887776653222111 11112 35889999999999999998 66778999999999
Q ss_pred hcCchhhHHHHHHHhhhh
Q 002814 725 HFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 725 ~~g~~~~A~~~~~~~~~~ 742 (877)
..|++++|..+++++.+.
T Consensus 554 ~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 554 QQGDVDEALKLFERAAEL 571 (615)
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 999999999999888654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-19 Score=198.65 Aligned_cols=309 Identities=14% Similarity=0.142 Sum_probs=202.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhCCC
Q 002814 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD---RITFNSLLAVCSRGGL 314 (877)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~ 314 (877)
+...|++++|+..|+++.+.+.. +..++..+...+...| ++++|..+++.++..+..++ ..++..++..|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRG-EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcC-cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34445555555555555543211 3334555555555555 55555555555554321111 1345555666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 002814 315 WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN----VVTYSTMIDGYAKAGRLDDALN 390 (877)
Q Consensus 315 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~A~~ 390 (877)
+++|..+|+++.+.. +.+..+++.++..+.+.|++++|++.++++.+.+..++ ...+..+...+.+.|++++|.+
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 666666666666542 23455666666666666666666666666665432221 1234556667777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 002814 391 MFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCV 470 (877)
Q Consensus 391 ~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 470 (877)
.|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 888777653 33455677777888888888888888888876542222456778888888889999999988888875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHH
Q 002814 471 SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK---NGLVESAVSLLDEMTKEGIRPNVVTY 547 (877)
Q Consensus 471 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~ 547 (877)
.|+...+..++..+.+.|++++|..+|+++.+. .|+..+++.++..++. .|+.++++.++++|.+.++.|+..
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-- 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR-- 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC--
Confidence 456666788888888899999999999888775 4788888888887765 458889999999998776666655
Q ss_pred HHHHHHHhhcCCh
Q 002814 548 NSIIDAFGRSATT 560 (877)
Q Consensus 548 ~~li~~~~~~g~~ 560 (877)
..|.++|-.
T Consensus 355 ----~~c~~cg~~ 363 (389)
T PRK11788 355 ----YRCRNCGFT 363 (389)
T ss_pred ----EECCCCCCC
Confidence 335555543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-19 Score=198.20 Aligned_cols=301 Identities=17% Similarity=0.156 Sum_probs=184.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCC
Q 002814 202 ILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN---LVTYNAVIDACGKGGV 278 (877)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~ 278 (877)
.+...|++++|...|+++.+.+. .+..++..+...+...|++++|+.+++.+...+..++ ..++..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g- 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG- 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC-
Confidence 34455666666666666665432 2445566666666666666666666666655321111 234555566666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 002814 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD----IFTYNTLLDAICKGAQMDLAF 354 (877)
Q Consensus 279 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~ 354 (877)
++++|..+|+++.+.. ..+..++..++.++.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|+
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 6666666666666542 22455566666666666666666666666665432221 123445666666677777777
Q ss_pred HHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002814 355 EIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG 434 (877)
Q Consensus 355 ~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 434 (877)
+.|+++.+.. +.+...+..+...|.+.|++++|.++|+++...+......+++.++.+|.+.|++++|...++++.+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777666543 223456666667777777777777777777655322223456667777777777777777777776653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH
Q 002814 435 IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK---GGLYKEAMQIFREFKQAGLKADVV 510 (877)
Q Consensus 435 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 510 (877)
|+...+..++..+.+.|++++|..+|+++.+. .|+..+++.++..+.. .|+.+++..+|++|.+.++.++..
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 45555567777777777777777777777664 5677777777666654 446777777777777666555544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-18 Score=196.08 Aligned_cols=405 Identities=14% Similarity=0.052 Sum_probs=301.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002814 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (877)
Q Consensus 159 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 238 (877)
+......+.+.|++++|++.|+.++...+ +...|..+..+|.+.|++++|++.++.+++.... +..+|..+..+|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p----~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~ 204 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP----DPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 44567778899999999999999998752 2457888999999999999999999999987543 678999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHH----------------HH---------C
Q 002814 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDM----------------LR---------N 293 (877)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m----------------~~---------~ 293 (877)
...|++++|+..|......+...+......+...+.+. ....+...++.- .. .
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKF--AESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH--HHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 99999999999887765432211221111111111100 011111111000 00 0
Q ss_pred --CCCCCH-HHHHHHHHH---HHhCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCC
Q 002814 294 --GVQPDR-ITFNSLLAV---CSRGGLWEAARNLFNEMVHRG--IDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNI 365 (877)
Q Consensus 294 --g~~p~~-~t~~~ll~~---~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 365 (877)
...++. ..+..+... ....+++++|.+.|++.++.+ .+.+...|+.+...+...|++++|+..|++..+...
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 000000 001111111 123468999999999999865 233467788899999999999999999999987632
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002814 366 SPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNAL 445 (877)
Q Consensus 366 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 445 (877)
-+...|..+...+...|++++|+..|+++.+.. +.+...|..+...+...|++++|+..|++.++.. +.+...+..+
T Consensus 363 -~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~l 439 (615)
T TIGR00990 363 -RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQL 439 (615)
T ss_pred -CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHH
Confidence 246688899999999999999999999998774 4567889999999999999999999999999876 5678888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHH
Q 002814 446 LGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVV------LYSALIDAL 519 (877)
Q Consensus 446 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~li~~~ 519 (877)
...+.+.|++++|+..|++.++. .+.+...|+.+...+...|++++|++.|++..+.....+.. .++..+..+
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 99999999999999999999875 34467889999999999999999999999998754221111 122222334
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCChhhhHHHHHHHhhhhhh
Q 002814 520 CKNGLVESAVSLLDEMTKEGIRPNV-VTYNSIIDAFGRSATTECTVDDVERDLGKQKE 576 (877)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (877)
...|++++|.+++++..+. .|+. .++..+...+.+.|++++|+..++++++....
T Consensus 519 ~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 4579999999999999875 3444 47889999999999999999999999887553
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-17 Score=179.03 Aligned_cols=524 Identities=14% Similarity=0.086 Sum_probs=359.0
Q ss_pred HHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002814 172 WSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEG--YGNTVYAFSALISAYGRSGYCQEAIS 249 (877)
Q Consensus 172 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~ 249 (877)
.+.|...|...++.. +++.-.+..-+......|++..|..+|..++... ..+|+.+ .+...+.+.|+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~s---p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS---PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhC---CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHH
Confidence 578888888888774 4443232222333445678999999999976543 3344322 33355668899999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002814 250 VFNSMKRYNLKPN-LVTYNAVIDACG---KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEM 325 (877)
Q Consensus 250 ~~~~m~~~g~~p~-~~~~~~ll~~~~---~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m 325 (877)
.|.+..+.+ |+ +.++..|.-.-. ... .+..+..++...-.... -|+...+.|.+.|.-.|+++.+..+...+
T Consensus 221 a~~ralqLd--p~~v~alv~L~~~~l~~~d~~-s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~a 296 (1018)
T KOG2002|consen 221 AFERALQLD--PTCVSALVALGEVDLNFNDSD-SYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHA 296 (1018)
T ss_pred HHHHHHhcC--hhhHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 999998843 43 333322222111 122 45667777776665433 36778888889999999999999999888
Q ss_pred HHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 002814 326 VHRGID--QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD 403 (877)
Q Consensus 326 ~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 403 (877)
...... .-...|..+..+|-..|++++|...|.+..+..-.--+..+--+...|.+.|+++.+...|+...+.. +-+
T Consensus 297 i~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~ 375 (1018)
T KOG2002|consen 297 IKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNN 375 (1018)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cch
Confidence 875321 11345778889999999999999999887765322113445567888999999999999999988763 445
Q ss_pred HHHHHHHHHHHHHcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHCCCCCCHH
Q 002814 404 RVSYNTVLSIYAKLG----RFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM----KADCVSPNLL 475 (877)
Q Consensus 404 ~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~ 475 (877)
..+...|...|...+ ..+.|..++.+..+.- +.|...|-.+...|....- ..++.+|..+ ...+..+-..
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHH
Confidence 677777777777665 5678888888877665 5677888777777765443 3336666554 3455557788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-
Q 002814 476 TYSTLIDVYSKGGLYKEAMQIFREFKQA---GLKADV------VLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV- 545 (877)
Q Consensus 476 t~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~- 545 (877)
..|.+...+...|++++|...|+..... ...+|. .+--.+...+-..++.+.|.+.|..+++. .|+.+
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId 531 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYID 531 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHH
Confidence 8899999999999999999999887654 112222 23334555666788899999999999874 46655
Q ss_pred HHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHh
Q 002814 546 TYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQE 625 (877)
Q Consensus 546 ~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 625 (877)
.|.-+.......+.+.+|...+..++..+..+++..++++..++.. .+
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k--------------------------------~~ 579 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKK--------------------------------SE 579 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhh--------------------------------hh
Confidence 3444432333446777888888887777665554433333222111 12
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH------------cCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-cc
Q 002814 626 ILCILGVFQKMHKL-KIKPNVVTFSAILNACS------------RCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RD 691 (877)
Q Consensus 626 ~~~A~~~~~~m~~~-g~~Pd~~t~~~ll~a~~------------~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 691 (877)
+.-|-+-|...... ...+|..+..+|++.|. ..+..++|+++|.+++..+|.+..+.+++...+ ..
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEK 659 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhc
Confidence 22233333333221 13378888888888665 235678999999999999999988888875544 68
Q ss_pred chHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhh
Q 002814 692 NIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 692 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (877)
|++.+|..+|.++.+--. ....+|-.|+.+|..+|+|..|.+++......
T Consensus 660 g~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred cCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999987544 45678999999999999999999999876543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-17 Score=192.32 Aligned_cols=329 Identities=11% Similarity=0.006 Sum_probs=179.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 002814 198 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGG 277 (877)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 277 (877)
.++..+.+.|++++|..+++.++..... +..++..++.+....|++++|+..|+++.+..+. +...+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcC
Confidence 3444555566666666666666554332 3444444445555566666666666666553321 3444555555555566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 278 VDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIM 357 (877)
Q Consensus 278 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 357 (877)
++++|+..|+++++... .+...+..+...+...|++++|...++.+...... +...+..+ ..+.+.|++++|+.++
T Consensus 125 -~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 125 -QYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred -CHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 66666666666655421 13444555555666666666666666655543221 22222222 2355556666666666
Q ss_pred HHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHC
Q 002814 358 AEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEE----ALLVCKEMESS 433 (877)
Q Consensus 358 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~ 433 (877)
+.+.+....++...+..+...+.+.|++++|+..|+++.+.. +.+...+..+...|...|++++ |+..|++..+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 665544322233344444555666666666666666665543 3345555556666666666654 56666666654
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHH
Q 002814 434 GIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADV-VLY 512 (877)
Q Consensus 434 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~ 512 (877)
. +.+..++..+...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+++.+.+ |+. ..+
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 3 3445566666666666666666666666666542 2234455556666666666666666666666543 232 223
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 513 SALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
..+..++...|+.++|+..|++..+
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344556666666666666666655
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-17 Score=190.37 Aligned_cols=333 Identities=9% Similarity=-0.000 Sum_probs=274.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002814 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (877)
Q Consensus 159 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 238 (877)
...++..+.+.|++++|+.+++.++...+ ....++..++.++...|++++|...|+++....+. +..++..+...+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p---~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l 120 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAK---NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVL 120 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCC---CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 44567788899999999999999988863 33446677778888899999999999999987543 678899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 002814 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAA 318 (877)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 318 (877)
...|++++|++.|+++.+.... +...+..+...+...| ++++|...++.+...... +...+..+ ..+...|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g-~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMD-KELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence 9999999999999999875322 5678888899999999 999999999988776433 33333333 347889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHH
Q 002814 319 RNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDD----ALNMFSE 394 (877)
Q Consensus 319 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~----A~~~~~~ 394 (877)
...++.+++.....+...+..+...+.+.|++++|++.|+++..... .+...+..+...|...|++++ |+..|++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 99999988864334455566677889999999999999999988753 367888899999999999986 8999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 002814 395 MKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL 474 (877)
Q Consensus 395 m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 474 (877)
..+.. +.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+..+|.+.|++++|...|+++.+. .|+.
T Consensus 276 Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~ 351 (656)
T PRK15174 276 ALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVT 351 (656)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc
Confidence 98774 4467789999999999999999999999999875 556778888999999999999999999999876 3443
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002814 475 -LTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504 (877)
Q Consensus 475 -~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 504 (877)
..+..+..++...|+.++|...|++..+..
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344456778899999999999999998764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-17 Score=192.39 Aligned_cols=411 Identities=13% Similarity=0.025 Sum_probs=310.0
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 002814 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFS 232 (877)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 232 (877)
..++......+......|+.++|+++|..+.... +.....+..+..++...|++++|.++|+++++..+ .+...+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~---~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~ 87 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM---QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQR 87 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 3456666666777788999999999999887643 34455688899999999999999999999988643 3577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 002814 233 ALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG 312 (877)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 312 (877)
.++..+...|++++|+..++++.+.... +.. +..+..++...| +.++|+..++++++.... +...+..+..++...
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g-~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~ 163 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAG-RHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 8999999999999999999999875322 455 888888888999 999999999999987443 555666778888889
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHchhC-CCCCCHH-HH----
Q 002814 313 GLWEAARNLFNEMVHRGIDQDI------FTYNTLLDAIC-----KGAQM---DLAFEIMAEMPAK-NISPNVV-TY---- 372 (877)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~pd~~-~~---- 372 (877)
|..+.|++.++.+.. .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+
T Consensus 164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~ 240 (765)
T PRK10049 164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR 240 (765)
T ss_pred CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence 999999998876654 1221 11222232222 22334 7788888888754 1122221 11
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 002814 373 STMIDGYAKAGRLDDALNMFSEMKFLGIG-LDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD----AVTYNALLG 447 (877)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~ 447 (877)
...+..+...|++++|+..|+++.+.+.. |+. ....+..+|...|++++|+.+|+++.+.. +.+ ...+..+..
T Consensus 241 ~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 241 IDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHH
Confidence 11134556779999999999999887522 332 22335778999999999999999987653 111 345666777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002814 448 GYGKQGKYDEVRRMFEQMKADCV-----------SPN---LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYS 513 (877)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~g~-----------~p~---~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 513 (877)
++.+.|++++|.++++++.+... .|+ ...+..+...+...|++++|+++++++.... +-+...+.
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~ 397 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRI 397 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 88999999999999999987521 123 2345677788889999999999999998865 34678899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhh
Q 002814 514 ALIDALCKNGLVESAVSLLDEMTKEGIRPNV-VTYNSIIDAFGRSATTECTVDDVERDLGKQKESAN 579 (877)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~ 579 (877)
.+...+...|++++|++.+++..+. .|+. ..+..+...+.+.|++++|...++++++..|+++.
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999884 4664 46667777889999999999999999999998763
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-15 Score=180.63 Aligned_cols=375 Identities=10% Similarity=0.051 Sum_probs=253.5
Q ss_pred ChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 002814 191 DQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVI 270 (877)
Q Consensus 191 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 270 (877)
.+.....-.+.+....|+.++|++++.+..... +.+...+..+...+.+.|++++|+.+|++..+... .+...+..+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 344456677788899999999999999998632 34667799999999999999999999999887532 2566777888
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 002814 271 DACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQM 350 (877)
Q Consensus 271 ~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 350 (877)
..+...| ++++|+..++++++... .+.. +..+..++...|+.++|+..++++.+... .+...+..+..++.+.|..
T Consensus 91 ~~l~~~g-~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 91 LTLADAG-QYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHCC-CHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCh
Confidence 8889999 99999999999998733 2455 88888899999999999999999999743 3566777788899999999
Q ss_pred HHHHHHHHHchhCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHH
Q 002814 351 DLAFEIMAEMPAKNISPNV------VTYSTMIDGYA-----KAGRL---DDALNMFSEMKFL-GIGLDRV-SY----NTV 410 (877)
Q Consensus 351 ~~A~~~~~~m~~~g~~pd~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~pd~~-~~----~~l 410 (877)
++|++.++..... |+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+ ...
T Consensus 167 e~Al~~l~~~~~~---p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANLT---PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 9999999877752 331 11122222222 22233 6677777777754 1122221 11 111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHh
Q 002814 411 LSIYAKLGRFEEALLVCKEMESSGIR-KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP---NLLTYSTLIDVYSK 486 (877)
Q Consensus 411 i~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~ 486 (877)
+.++...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+.+|+++.+..... ....+..+..++.+
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 23445667888888888888776521 221 22224667788888888888888876542111 13445566667778
Q ss_pred cCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 487 GGLYKEAMQIFREFKQAGL-----------KAD---VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (877)
Q Consensus 487 ~g~~~~A~~~~~~m~~~g~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 552 (877)
.|++++|.++++.+.+... .|+ ...+..+...+...|+.++|+++|+++.... +-+...+..+..
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 8888888888887776421 112 1234455666777777777777777776641 223446666666
Q ss_pred HHhhcCChhhhHHHHHHHhhhhhh
Q 002814 553 AFGRSATTECTVDDVERDLGKQKE 576 (877)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~~ 576 (877)
.+...|+.++|++.++++++..|+
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCC
Confidence 666666666665555555544443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.3e-15 Score=170.32 Aligned_cols=443 Identities=11% Similarity=0.058 Sum_probs=295.2
Q ss_pred HHHHHHHHhccCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHh
Q 002814 126 EEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGR 205 (877)
Q Consensus 126 ~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (877)
.+..-.....+....++..+.+.+...+.++.....++..+...|+.++|+..+++++... +........++..+..
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~---n~~~~~llalA~ly~~ 114 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM---NISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC---CCCHHHHHHHHHHHHH
Confidence 3333334444555555555555555444443222366666677788888888877777221 2222333444567777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHH
Q 002814 206 LGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVE 285 (877)
Q Consensus 206 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~ 285 (877)
.|+++.|+++|+++++..+. +..++..++..|...++.++|++.++++... .|+...+-.++..+...+ +..+|++
T Consensus 115 ~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~-~~~~AL~ 190 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD-RNYDALQ 190 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc-hHHHHHH
Confidence 78888888888888776544 4666667777777778888888888877763 355555533333333334 4545788
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHH---------HcCC---HH
Q 002814 286 IFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTY--NTLLDAIC---------KGAQ---MD 351 (877)
Q Consensus 286 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~--~~li~~~~---------~~g~---~~ 351 (877)
.++++++.... +...+..+..++.+.|-...|.++..+-.+. +.+....+ ...+.-.. ...+ .+
T Consensus 191 ~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 191 ASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 88888776322 5566667777777777777777665543321 11111111 00000111 1112 23
Q ss_pred HHHHHHHHchhC-CCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 352 LAFEIMAEMPAK-NISPNV-VTY----STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALL 425 (877)
Q Consensus 352 ~A~~~~~~m~~~-g~~pd~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~ 425 (877)
.|+.-++.+... +-.|.. ..| .-.+-++...|++.++++.|+.+...+.+.-..+-..+.++|...++.++|+.
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 444445554431 111221 222 23455778899999999999999988877667788999999999999999999
Q ss_pred HHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------------CCCCH-HHHHHHHHHHHh
Q 002814 426 VCKEMESSG-----IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC-------------VSPNL-LTYSTLIDVYSK 486 (877)
Q Consensus 426 ~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~-~t~~~li~~~~~ 486 (877)
+|+.+.... ..++......|.-+|...+++++|..+++++.+.- ..||- ..+..++..+..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 999987643 12345556788899999999999999999998731 11222 234456777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCChhhhHH
Q 002814 487 GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV-VTYNSIIDAFGRSATTECTVD 565 (877)
Q Consensus 487 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~ 565 (877)
.|++.+|.+.++++.... +-|......+.+.+...|.+.+|++.++.+... .|+. .+......++...|++++|..
T Consensus 429 ~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 999999999999998876 458999999999999999999999999777664 5554 477788888899999999999
Q ss_pred HHHHHhhhhhhhhhh
Q 002814 566 DVERDLGKQKESANL 580 (877)
Q Consensus 566 ~~~~~l~~~~~~~~~ 580 (877)
+....++.+|++...
T Consensus 506 ~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 506 LTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHhhCCCchhH
Confidence 999999999987633
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-14 Score=163.76 Aligned_cols=448 Identities=13% Similarity=0.110 Sum_probs=268.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
-+-...+.|+++.|++.|..+++..+..+ ..++ .++..++..|+.++|+.++++..... .........+...|...
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~--~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQS--GQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccch--hhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHc
Confidence 34445677888888888887777652211 1233 66777777788888888887776321 22344444446677777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 002814 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNL 321 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 321 (877)
|++++|+++|+++.+.... |...+..++..+...+ +.++|++.++++... .|+...+..++..+...++..+|++.
T Consensus 116 gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~-q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAG-RGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcC-CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 8888888888888775433 4555556666677777 777888877777665 44555554444444445566557777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 002814 322 FNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIG 401 (877)
Q Consensus 322 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 401 (877)
++++.+.. +.+...+..++.++.+.|-...|+++..+-... + +...+.- +. .+.|.+..+- +..
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~-l~-------~~~~a~~vr~----a~~ 255 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQ-LE-------RDAAAEQVRM----AVL 255 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHH-HH-------HHHHHHHHhh----ccc
Confidence 87777764 335666777777777777777777776654422 1 1111111 10 1112111111 111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C-CCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 002814 402 LDRVSYNTVLSIYAKLGRFEEALLVCKEMESS-G-IRKDAVT----YNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLL 475 (877)
Q Consensus 402 pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 475 (877)
++..- - .+.--.|.|+.-++.+... + .++.... ..-.+-++.+.|++.++++.|+.+...+.+.-..
T Consensus 256 ~~~~~----~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 256 PTRSE----T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred ccccc----h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 10000 0 0011234455555555431 1 1222111 1223446677788888888888888776543445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--------
Q 002814 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAG-----LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP-------- 542 (877)
Q Consensus 476 t~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------- 542 (877)
+-..+.++|...++.++|..+|+.+.... ..++......|.-+|...+++++|..+++++.+. .|
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~~~ 406 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVYGL 406 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEeccCC
Confidence 66777888888888888888888876532 1223444567777888888888888888888763 22
Q ss_pred -------CHH-HHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhc
Q 002814 543 -------NVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAG 614 (877)
Q Consensus 543 -------~~~-~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 614 (877)
|-. .+..++..+.-.|
T Consensus 407 ~~~~pn~d~~~~~~l~a~~~~~~g-------------------------------------------------------- 430 (822)
T PRK14574 407 PGKEPNDDWIEGQTLLVQSLVALN-------------------------------------------------------- 430 (822)
T ss_pred CCCCCCccHHHHHHHHHHHHHHcC--------------------------------------------------------
Confidence 111 1111122222222
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccc
Q 002814 615 QGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDN 692 (877)
Q Consensus 615 ~~~~~~~~~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 692 (877)
+..+|.+.++++.. ..| |......+.+.+...|...+|.+.++.+...+|.+..+..+..... ..+
T Consensus 431 ----------dl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 431 ----------DLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQ 498 (822)
T ss_pred ----------CHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhh
Confidence 55567777777765 445 6667777888888888888888888777777887777666554433 567
Q ss_pred hHHHHHHHHHHHhhcCCC
Q 002814 693 IWVQALSLFDEVKLMDSS 710 (877)
Q Consensus 693 ~~~~A~~~~~~~~~~~~~ 710 (877)
+|++|..+.+++++..|+
T Consensus 499 e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 499 EWHQMELLTDDVISRSPE 516 (822)
T ss_pred hHHHHHHHHHHHHhhCCC
Confidence 888888888888888774
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-15 Score=154.21 Aligned_cols=470 Identities=13% Similarity=0.097 Sum_probs=301.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHH
Q 002814 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT----VYAFSALI 235 (877)
Q Consensus 160 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li 235 (877)
..+...|..+..+.+|+..|+-+++....+. ...+-..+.+.+.+.+.+..|++.|+-++..-+..+ ....+.+.
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivknkmf~n-ag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVKNKMFPN-AGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhcccccCC-CceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 3356666677788899999988887765533 334445677888999999999999998877532222 34556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCC------------HHHHH
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD------------RITFN 303 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~------------~~t~~ 303 (877)
-.|.+.|++++|+..|+.+.+. .||..+--.|+-++..-| +-++..+.|.+|+..-..+| ....+
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~-d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIG-DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecC-cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 6788999999999999998874 478765444444445556 78999999999987533333 22222
Q ss_pred HHHH-----HHHhCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHH
Q 002814 304 SLLA-----VCSRGG--LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376 (877)
Q Consensus 304 ~ll~-----~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li 376 (877)
.-|+ -..+.+ +-++++-.-.+++.--+.||-. . -.+-+++.++.-....+..| .--...
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~-g~dwcle~lk~s~~~~la~d--lei~ka 426 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------A-GCDWCLESLKASQHAELAID--LEINKA 426 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------c-ccHHHHHHHHHhhhhhhhhh--hhhhHH
Confidence 2221 111111 1111111111111111112110 0 11222333322211100001 111223
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-H-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002814 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYA-K-LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454 (877)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~-~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 454 (877)
.-|.+.|+++.|+++++-+.+..-+.-...-+.|-..+. + -.++..|...-+..+..+ +-+......-.+.-...|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 457899999999999998876643333333333333322 2 235777777766665433 3333333333344456899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002814 455 YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDE 534 (877)
Q Consensus 455 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (877)
+++|.+.|++.+...-.-....|| +.-.+-..|++++|+++|-++...- ..+......+.+.|.-..+..+|++++-+
T Consensus 506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999999998763221122233 3335677899999999998875431 23677777888899999999999999988
Q ss_pred HHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhc
Q 002814 535 MTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAG 614 (877)
Q Consensus 535 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 614 (877)
.... +..|..+++.|.+.|-+.|+-..|.+.+-....++|.+.....++...+...
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt----------------------- 639 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT----------------------- 639 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh-----------------------
Confidence 7664 5556779999999999999999999998888888887765555544433332
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HcCCCHHHHHHHHHHHHhcCCcchhHHHHH
Q 002814 615 QGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNAC-SRCNSFEDASMLLEELRLFDNQVYGVAHGL 685 (877)
Q Consensus 615 ~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~-~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l 685 (877)
+-.++|+..|++..- ++|+.+-|..++..| .+.|++++|+++|......-|++..++.-+
T Consensus 640 ---------qf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 640 ---------QFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL 700 (840)
T ss_pred ---------HHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence 245568889998765 899999999888665 678999999999998877666666554443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-12 Score=138.64 Aligned_cols=362 Identities=12% Similarity=0.055 Sum_probs=158.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHcCCCCHH
Q 002814 206 LGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSM----KRYNLKPNLVTYNAVIDACGKGGVDFK 281 (877)
Q Consensus 206 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~g~~~~ 281 (877)
..-++.|..++.++.+. ++-+..+|.+-...--.+|+.+....++++- ...|+..+...|-.-...|-..| ..-
T Consensus 419 LetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag-sv~ 496 (913)
T KOG0495|consen 419 LETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG-SVI 496 (913)
T ss_pred HHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC-Chh
Confidence 33344444444444332 2223344443333333444444443333322 22333334444444334444444 333
Q ss_pred HHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002814 282 HVVEIFDDMLRNGVQPD--RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAE 359 (877)
Q Consensus 282 ~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (877)
.+..+....+..|+.-. ..||+.-...|.+.+.++-|+.+|...++. ++.+...|...+..--..|..++-..+|++
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44444444443333211 123444444444444444455554444443 222334444444444444444444444444
Q ss_pred chhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 002814 360 MPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDA 439 (877)
Q Consensus 360 m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 439 (877)
.... ++-..+.|-.....+-..|+...|..++.+..+.. +-+...|-.-+........++.|..+|.+.... .++.
T Consensus 576 av~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTe 651 (913)
T KOG0495|consen 576 AVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTE 651 (913)
T ss_pred HHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcc
Confidence 4433 22233334444444444555555555555544442 223444444444455555555555555544432 2444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDAL 519 (877)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 519 (877)
.+|.--+...--.+..++|++++++.++. ++.-...|..+.+.+-+.++++.|.+.|..-.+. ++-.+..|-.|...-
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakle 729 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLE 729 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHH
Confidence 44444444444445555555555554443 1111334444445555555555555544433322 122333444444444
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 520 CKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
.+.|.+-.|..+|++.+-.+. -|...|...|..-.+.|..+.|...+.++|+..|.+
T Consensus 730 Ek~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred HHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 445555555555555544321 133455555555555555555555555555544443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-12 Score=143.21 Aligned_cols=365 Identities=15% Similarity=0.154 Sum_probs=270.9
Q ss_pred HHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 002814 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQ 245 (877)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 245 (877)
+..+|++++|.+++..++++. |.+...|.+|..+|-..|+.+++...+-.+-...+. |...|..+.....+.|.++
T Consensus 149 lfarg~~eeA~~i~~EvIkqd---p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD---PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHH
Confidence 444599999999999999997 445668999999999999999999988877766544 7799999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhCCCHHHHHHH
Q 002814 246 EAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSL----LAVCSRGGLWEAARNL 321 (877)
Q Consensus 246 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~l----l~~~~~~g~~~~A~~~ 321 (877)
+|.-+|.+..+.... +...+---...|-+.| +...|..-|.++.....+.|..-+..+ +..+...++-+.|.+.
T Consensus 225 qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 225 QARYCYSRAIQANPS-NWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHhcCCc-chHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999986532 5555555667788899 999999999999987443343334333 4556677777999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHH----------------------H----H
Q 002814 322 FNEMVHRG-IDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTY----------------------S----T 374 (877)
Q Consensus 322 ~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~----------------------~----~ 374 (877)
++.....+ -..+...++.++..|.+...++.|.....++......+|..-| . -
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 88887632 2345667889999999999999999888777652222222111 1 1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 375 MIDGYAKAGRLDDALNMFSEMKFLG--IGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ 452 (877)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 452 (877)
++-++......+....+........ +.-+...|.-+.++|.+.|++.+|+.+|..+......-+...|--+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2223333444444444444444444 33445678889999999999999999999998876566788999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHHcCC
Q 002814 453 GKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ--------AGLKADVVLYSALIDALCKNGL 524 (877)
Q Consensus 453 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~~~~~li~~~~~~g~ 524 (877)
|.+++|.+.|+..+... +-+...-..|...|.+.|+.++|.+.+..+.. .+..|+...-....+.+.+.|+
T Consensus 463 ~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 99999999999998862 33456666777888999999999999988652 2234445555566677888898
Q ss_pred hHHHHHHHHHHHH
Q 002814 525 VESAVSLLDEMTK 537 (877)
Q Consensus 525 ~~~A~~~~~~m~~ 537 (877)
.++-+.+-..|+.
T Consensus 542 ~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 542 REEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHHH
Confidence 8887766666654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-12 Score=140.49 Aligned_cols=362 Identities=14% Similarity=0.146 Sum_probs=259.5
Q ss_pred HHhccCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHH
Q 002814 132 VTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDL 211 (877)
Q Consensus 132 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 211 (877)
+...++..++..-+.+.+...+..+..|..|...|-++|+.++++.++-.+...+ +.+...|..+.....+.|.+++
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~---p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN---PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHhcccHHH
Confidence 3334555555555556677777788899999999999999999999887666664 3444799999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHcCCCCHHHHHHHH
Q 002814 212 AKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYN----AVIDACGKGGVDFKHVVEIF 287 (877)
Q Consensus 212 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~g~~~~~a~~~~ 287 (877)
|+-.|.++++..+. +....---+..|-+.|+...|.+.|.++......-|..-+. .++..+...+ +-+.|.+.+
T Consensus 226 A~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~-~~e~a~~~l 303 (895)
T KOG2076|consen 226 ARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN-ERERAAKAL 303 (895)
T ss_pred HHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh-HHHHHHHHH
Confidence 99999999998544 55555556788999999999999999999864322322222 3345566667 668899998
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---------------------------CCCHHHHHH
Q 002814 288 DDMLRNG-VQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGI---------------------------DQDIFTYNT 339 (877)
Q Consensus 288 ~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~---------------------------~~~~~~~~~ 339 (877)
+.....+ -..+...++.++..|.+...++.|......+..+.. ..+..+ --
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IR 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-Hh
Confidence 8887632 223456688888899999999999988887776222 222222 12
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 340 LLDAICKGAQMDLAFEIMAEMPAKN--ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKL 417 (877)
Q Consensus 340 li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 417 (877)
++-++.+....+...-+...+.+.. +.-+...|.-+.++|...|++.+|+.+|..+......-+...|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2233334444444444444444444 33456678888999999999999999999998876666678899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHhcCC
Q 002814 418 GRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA--------DCVSPNLLTYSTLIDVYSKGGL 489 (877)
Q Consensus 418 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~li~~~~~~g~ 489 (877)
|.+++|.+.|+.++... +.+...-..|...|.+.|+.++|.+.+..+.. .+..|+........+.|.+.|+
T Consensus 463 ~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 99999999999988765 55566667788888999999999999988642 2234444444555566777777
Q ss_pred HHHHHHHHHHH
Q 002814 490 YKEAMQIFREF 500 (877)
Q Consensus 490 ~~~A~~~~~~m 500 (877)
.++-+.+-..|
T Consensus 542 ~E~fi~t~~~L 552 (895)
T KOG2076|consen 542 REEFINTASTL 552 (895)
T ss_pred HHHHHHHHHHH
Confidence 76654444333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-11 Score=129.66 Aligned_cols=328 Identities=13% Similarity=0.077 Sum_probs=147.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhCCCH
Q 002814 240 RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDML----RNGVQPDRITFNSLLAVCSRGGLW 315 (877)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~----~~g~~p~~~t~~~ll~~~~~~g~~ 315 (877)
+...++.|..++++.++. ++-+...|.+-...--.+| +.+...+++++-+ ..|+..+..-|..=...|-+.|..
T Consensus 418 rLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ng-n~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANG-NVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 334444555555554442 2224444443333333344 4444444443322 234444444444444444444555
Q ss_pred HHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 316 EAARNLFNEMVHRGIDQD--IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFS 393 (877)
Q Consensus 316 ~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 393 (877)
--+..+....+..|++.. -.+|+.-...|.+.+.++-|+.+|....+. ++-+...|...+..--..|..++-..+|+
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 445555444444443311 234444444555555555555555544443 12233444444444444455555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 002814 394 EMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPN 473 (877)
Q Consensus 394 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 473 (877)
+.... ++-....|.....-+-..|++..|+.++....+.. +.+...|-+-+.....+.+++.|..+|.+.... .|+
T Consensus 575 kav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgT 650 (913)
T KOG0495|consen 575 KAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGT 650 (913)
T ss_pred HHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCc
Confidence 54443 12233333333444444455555555555554443 234444544455555555555555555554442 233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 002814 474 LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD-VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSII 551 (877)
Q Consensus 474 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li 551 (877)
...|.--+....-.++.++|.+++++.++.- |+ ...|..+...+.+.++.+.|.+.|..=.+. .|+.. .|..|.
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLa 726 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLA 726 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHH
Confidence 3333333333333445555555555544431 22 234444444444555555555444443332 23322 444444
Q ss_pred HHHhhcCChhhhHHHHHHHhhhhhhhh
Q 002814 552 DAFGRSATTECTVDDVERDLGKQKESA 578 (877)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (877)
..--+.|.+-.|..+++++.-.+|.+.
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence 444444555555555555554444443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-12 Score=129.26 Aligned_cols=321 Identities=17% Similarity=0.259 Sum_probs=226.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHH--HHhcCChHHH-HHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISI--LGRLGKVDLA-KNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 160 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
+.+++. ...|....+.-+|++|...+....+ .+-..|++. |....+.--| ++-|-.|.+.|-. +..+|
T Consensus 120 ~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~--kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW----- 190 (625)
T KOG4422|consen 120 NNLLKM-ISSREVKDSCILYERMRSENVDVSE--KVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW----- 190 (625)
T ss_pred hHHHHH-HhhcccchhHHHHHHHHhcCCCCCH--HHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc-----
Confidence 444443 4567888888899988887754333 333344332 3333333322 3455555555432 33343
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002814 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 316 (877)
+.|.+.+ -+|+...+ +..+|..||.++|+-. ..+.|.++|++......+.+..+||.+|.+-.-.
T Consensus 191 ---K~G~vAd--L~~E~~PK-----T~et~s~mI~Gl~K~~-~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~---- 255 (625)
T KOG4422|consen 191 ---KSGAVAD--LLFETLPK-----TDETVSIMIAGLCKFS-SLERARELYKEHRAAKGKVYREAFNGLIGASSYS---- 255 (625)
T ss_pred ---ccccHHH--HHHhhcCC-----CchhHHHHHHHHHHHH-hHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----
Confidence 4555444 34443332 6678999999999988 8999999999998887888999999998764432
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHH
Q 002814 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDL----AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDD-ALNM 391 (877)
Q Consensus 317 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~-A~~~ 391 (877)
...++..+|......||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ |..+
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 227888999998899999999999999999998775 56778899999999999999999999998877644 4555
Q ss_pred HHHHHHC----CC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCCHH
Q 002814 392 FSEMKFL----GI----GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG----IRKD---AVTYNALLGGYGKQGKYD 456 (877)
Q Consensus 392 ~~~m~~~----g~----~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~ 456 (877)
+.++... .+ +-|..-|..-++.|.+..+.+.|.++..-+.... +.++ ..-|..+....|+....+
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554432 22 2345567778888888899998988876654321 1222 233556677778888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002814 457 EVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504 (877)
Q Consensus 457 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 504 (877)
.-...|+.|.-+-.-|+..+..-++.+..-.|.++-.-+++.+++..|
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 888888888877677788888888888888888888888888887765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.6e-11 Score=120.63 Aligned_cols=398 Identities=11% Similarity=0.076 Sum_probs=252.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 237 (877)
.|..-.+-=..++++++|+.+|++++..+. .+..++...+.+-.++..+..|+.++++++..-+. -...|--.+-+
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~---r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ym 150 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDY---RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccc---ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHH
Confidence 343334444456778889999999998763 34558888899999999999999999999886433 23456656656
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 002814 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEA 317 (877)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 317 (877)
--..|++.-|.++|++-.+ ..|+..+|++.|+.-.+-. +.+.|..+|++.+- +.|++.+|--..+.-.+.|....
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRyk-eieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYK-EIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhh-HHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence 6678999999999998876 5699999999999988888 89999999999886 46899999888888889999999
Q ss_pred HHHHHHHHHHc-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCC--HHHHHHHHHHHHHcCCH---HHHHH
Q 002814 318 ARNLFNEMVHR-GI-DQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN--VVTYSTMIDGYAKAGRL---DDALN 390 (877)
Q Consensus 318 A~~~~~~m~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~li~~~~~~g~~---~~A~~ 390 (877)
|..+|+..++. |- .-+...+++....-.++..++.|.-+|+-..+. ++.+ ...|......--+-|+. ++++-
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99999988764 20 112334555555555677788888888766654 2212 23344333333334443 23221
Q ss_pred -----HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH----HH----HHHHcCCH
Q 002814 391 -----MFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDA--VTYNAL----LG----GYGKQGKY 455 (877)
Q Consensus 391 -----~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~l----i~----~~~~~g~~ 455 (877)
-++.+...+ +-|-.+|--.++.-...|+.+...++|++.+..- +|-. ..|.-. |+ .-....+.
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 122333332 4455666666666666677777777777776542 3311 011100 11 11234566
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 002814 456 DEVRRMFEQMKADCVSPNLLTYSTLIDVYS----KGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSL 531 (877)
Q Consensus 456 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 531 (877)
+.+.++|+..++. ++-...|+.-+--+|+ ++.++..|.+++...+ |.-|-..+|...|..-.+.++++....+
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 6666666666653 3444455554444443 3456666666666554 3345666666666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHh
Q 002814 532 LDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDL 571 (877)
Q Consensus 532 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l 571 (877)
|++.++.+. -|..+|......-...|+.+.|..+++-++
T Consensus 460 YEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 460 YEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAI 498 (677)
T ss_pred HHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 666666432 144466655555555566555555444443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.3e-12 Score=127.97 Aligned_cols=363 Identities=15% Similarity=0.195 Sum_probs=163.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 002814 195 LASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274 (877)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 274 (877)
++..||.++|+.-..+.|+++|.+........+..+||.+|.+-.-.. ..+++.+|....+.||..|+|+++.+..
T Consensus 209 t~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~a 284 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAA 284 (625)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHH
Confidence 444445555554444555555544444333344444444444322111 1344444444444455555555555444
Q ss_pred cCCCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHc--C------CCCCHHHHHHHH
Q 002814 275 KGGVDFKH----VVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEA-ARNLFNEMVHR--G------IDQDIFTYNTLL 341 (877)
Q Consensus 275 ~~g~~~~~----a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-A~~~~~~m~~~--g------~~~~~~~~~~li 341 (877)
+.| +++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ +..++.++... | .+.|...|..-+
T Consensus 285 kfg-~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM 363 (625)
T KOG4422|consen 285 KFG-KFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAM 363 (625)
T ss_pred Hhc-chHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHH
Confidence 444 3332 23344444444555555444444444444443322 22222222211 0 111233334444
Q ss_pred HHHHHcCCHHHHHHHHHHchhCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 342 DAICKGAQMDLAFEIMAEMPAKN----ISPN---VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (877)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~m~~~g----~~pd---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 414 (877)
..|.+..+.+-|.++..-+.... +.|+ .+-|..+....|+....+.-+..|+.|.-.-.-|+..+...++.+.
T Consensus 364 ~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~ 443 (625)
T KOG4422|consen 364 SICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRAL 443 (625)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHH
Confidence 44444444444444433322110 1111 1223444444444444444455555444443444444444444444
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--------------------C-HHHHHHHHHHHHHCCCCCC
Q 002814 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG--------------------K-YDEVRRMFEQMKADCVSPN 473 (877)
Q Consensus 415 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--------------------~-~~~A~~~~~~m~~~g~~p~ 473 (877)
.-.|+++-.-+++..++..|..-+...-.-++..+++.. + .+.....-.+|.+..+ .
T Consensus 444 ~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~ 521 (625)
T KOG4422|consen 444 DVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--P 521 (625)
T ss_pred hhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--C
Confidence 444444444444444443332211111111111111111 1 1112222234444433 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 002814 474 LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL-KADVVLYS---ALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYN 548 (877)
Q Consensus 474 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~ 548 (877)
....+..+..+.+.|..++|.++|..+.+++- .|-....| -+++.-.+.+....|..+++-|...+.. ..+ .-+
T Consensus 522 ~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~-~~E~La~ 600 (625)
T KOG4422|consen 522 ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP-ICEGLAQ 600 (625)
T ss_pred hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch-hhhHHHH
Confidence 45566666777888888888888888855432 23333444 5555666778888888888888765432 333 344
Q ss_pred HHHHHHhhcCChhhhHH
Q 002814 549 SIIDAFGRSATTECTVD 565 (877)
Q Consensus 549 ~li~~~~~~g~~~~a~~ 565 (877)
.+...|.-.....+++.
T Consensus 601 RI~e~f~iNqeq~~~ls 617 (625)
T KOG4422|consen 601 RIMEDFAINQEQKEALS 617 (625)
T ss_pred HHHHhcCcCHHHHHHHh
Confidence 55555544443334433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-11 Score=124.97 Aligned_cols=361 Identities=12% Similarity=0.069 Sum_probs=259.6
Q ss_pred CChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 002814 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV 269 (877)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 269 (877)
..+...+......+.+.|..+.|+..|...+.. .+..-.+|..|... .-+.+.+..+...+.. +-....=-.+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~l---it~~e~~~~l~~~l~~---~~h~M~~~F~ 233 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSEL---ITDIEILSILVVGLPS---DMHWMKKFFL 233 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHh---hchHHHHHHHHhcCcc---cchHHHHHHH
Confidence 445566666777788899999999999888765 22334444444333 2233332222211111 0111222234
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHc
Q 002814 270 IDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGI--DQDIFTYNTLLDAICKG 347 (877)
Q Consensus 270 l~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~ 347 (877)
..++.... ..+++++-.+.....|+.-....-+....+.....++++|+.+|+++.+... -.|..+|+.++-.-..+
T Consensus 234 ~~a~~el~-q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 234 KKAYQELH-QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 45566666 6788888888888888876666666666777788999999999999998742 12577787776544333
Q ss_pred CCHH-HHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002814 348 AQMD-LAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLV 426 (877)
Q Consensus 348 g~~~-~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 426 (877)
.++. -|..++. +-+ --..|...+.+-|.-.++.++|...|++..+.+ +-....|+.+..-|....+...|++.
T Consensus 313 skLs~LA~~v~~-idK----yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKLSYLAQNVSN-IDK----YRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHHH-hcc----CCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 2222 2333332 111 134677788888999999999999999998875 44567889999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002814 427 CKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK 506 (877)
Q Consensus 427 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 506 (877)
++..++.. +.|-..|..|.++|.-.+...=|+-.|++..+. .+-|...|.+|.++|.+.++.++|++.|......| .
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 99999876 779999999999999999999999999999876 34578999999999999999999999999999876 3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCHH--HHHHHHHHHhhcCChhhhHHHH
Q 002814 507 ADVVLYSALIDALCKNGLVESAVSLLDEMTK----EGIRPNVV--TYNSIIDAFGRSATTECTVDDV 567 (877)
Q Consensus 507 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~ 567 (877)
.+...+..|...|-+.++.++|...|++-++ .|..-+.. ...-|..-+.+.+++++|-...
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 3668999999999999999999998888765 24333322 2223555667778887775443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-12 Score=130.60 Aligned_cols=384 Identities=16% Similarity=0.167 Sum_probs=199.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHHccccCCC--hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002814 163 LRELGNRGEWSKAIQCFAFAVKREERKND--QGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 240 (877)
...+.+.+++.+|+++|.-++.+-+.... ...+.+.+...+.+.|++++|+.-|+...+. .|+..+-..|+-++.-
T Consensus 244 gni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~ 321 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFA 321 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhee
Confidence 44456778899999999988876533222 2345666667788999999999999999876 4675554445555666
Q ss_pred cCCHHHHHHHHHHHHhCCC------------CCCHHHHHHHHH-----HHHcCC-CCHHHHHHHHHHHHHCCCCCCHH--
Q 002814 241 SGYCQEAISVFNSMKRYNL------------KPNLVTYNAVID-----ACGKGG-VDFKHVVEIFDDMLRNGVQPDRI-- 300 (877)
Q Consensus 241 ~g~~~~A~~~~~~m~~~g~------------~p~~~~~~~ll~-----~~~~~g-~~~~~a~~~~~~m~~~g~~p~~~-- 300 (877)
-|+-++..+.|.+|..... .|+....|..|. ..-+.. .+.++++-.-.+++.--+.|+-.
T Consensus 322 i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g 401 (840)
T KOG2003|consen 322 IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAG 401 (840)
T ss_pred cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcc
Confidence 8899999999999975432 233333333332 222211 01222222222222221222210
Q ss_pred -----------HHH--------HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------------
Q 002814 301 -----------TFN--------SLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAIC---------------- 345 (877)
Q Consensus 301 -----------t~~--------~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~---------------- 345 (877)
.+. .-..-|.+.|+++.|.+++.-+.+..-..-...-|.|-..+.
T Consensus 402 ~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~ 481 (840)
T KOG2003|consen 402 CDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADI 481 (840)
T ss_pred cHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHH
Confidence 000 112346789999999999887766532211222222222211
Q ss_pred --------------------HcCCHHHHHHHHHHchhCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002814 346 --------------------KGAQMDLAFEIMAEMPAKNISPNVVTYSTM---IDGYAKAGRLDDALNMFSEMKFLGIGL 402 (877)
Q Consensus 346 --------------------~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p 402 (877)
..|++++|.+.|++.... |...-.+| .-.+-..|++++|++.|-++... +.-
T Consensus 482 aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~n 556 (840)
T KOG2003|consen 482 ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLN 556 (840)
T ss_pred HhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHh
Confidence 134555555555555443 22211111 11234455555555555544322 122
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 403 DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLID 482 (877)
Q Consensus 403 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 482 (877)
+..+...+.+.|....+..+|++++.+.... ++.|+.+...|.+.|-+.|+-..|.+.+-+-... ++-|..|..-|..
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~a 634 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAA 634 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHH
Confidence 3344444455555555555555555444322 2445555555555555555555555554443332 3445555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 002814 483 VYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALC-KNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSA 558 (877)
Q Consensus 483 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 558 (877)
.|....-+++|+.+|++..- +.|+..-|..||..|. +.|++.+|+++|++.... +.-|...+..|+..|...|
T Consensus 635 yyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 55555555555555555433 2455555555554333 355555555555555432 4444455555555555444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-09 Score=115.05 Aligned_cols=535 Identities=13% Similarity=0.167 Sum_probs=329.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
|..|..-+..+..+|+...-+..|++++..-+.. ....+|...+......+-.+.+..+|++.++. ++..-+-.|
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvt-qH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVT-QHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchH-hhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 5567777788888999999999999998764332 22357888888888889999999999999885 445577888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHCCCCCCH--HHHHH
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYN------LKPNLVTYNAVIDACGKGGVDFK---HVVEIFDDMLRNGVQPDR--ITFNS 304 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~---~a~~~~~~m~~~g~~p~~--~t~~~ 304 (877)
..+++.+++++|.+.+....... .+-+...|+-+-+...+.- +.- ....+++.++.. -+|. ..|++
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p-~~~~slnvdaiiR~gi~r--ftDq~g~Lw~S 253 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNP-DKVQSLNVDAIIRGGIRR--FTDQLGFLWCS 253 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCc-chhcccCHHHHHHhhccc--CcHHHHHHHHH
Confidence 99999999999999998876431 2335556777766666543 222 223344444432 2343 56899
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------------------HHHHHHHHHHchh
Q 002814 305 LLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQ----------------------MDLAFEIMAEMPA 362 (877)
Q Consensus 305 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------------------~~~A~~~~~~m~~ 362 (877)
|.+-|.+.|.++.|..+|++.+..- .++.-|+.+.+.|++-.. ++-.+.-|+.+..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 9999999999999999999988752 234445555555543211 1222233333322
Q ss_pred CC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q 002814 363 KN-----------ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD------RVSYNTVLSIYAKLGRFEEALL 425 (877)
Q Consensus 363 ~g-----------~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd------~~~~~~li~~~~~~g~~~~A~~ 425 (877)
.+ -+-++.+|..-+.. ..|+..+-...|.+.... +.|. ...|..+.+.|-..|+++.|..
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 21 11133344433332 246677777778777654 2222 2457888888999999999999
Q ss_pred HHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----------------CCHHHHHHHHHHHH
Q 002814 426 VCKEMESSGIRKD---AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS-----------------PNLLTYSTLIDVYS 485 (877)
Q Consensus 426 ~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----------------p~~~t~~~li~~~~ 485 (877)
+|++..+..++-- ..+|.....+-.+..+++.|+++.+.....--. -+...|+..++.--
T Consensus 409 ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 409 IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 9998887654322 455666667777788888888888776532111 12234555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhh---cCChh
Q 002814 486 KGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGR---SATTE 561 (877)
Q Consensus 486 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~---~g~~~ 561 (877)
..|-++....+|+++++..+. ++.........+-...-++++.++|++=+..=-.|+.. .|++.+.-+.+ .-+++
T Consensus 489 s~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence 667778888888888776553 22222222223445556788888887766542345554 67765554422 23577
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCC
Q 002814 562 CTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKI 641 (877)
Q Consensus 562 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~ 641 (877)
.|..+++++|+.-|.. ....+.-+|.++..+. | ....|+.++++... ++
T Consensus 568 raRdLFEqaL~~Cpp~-------------------~aKtiyLlYA~lEEe~-G----------Lar~amsiyerat~-~v 616 (835)
T KOG2047|consen 568 RARDLFEQALDGCPPE-------------------HAKTIYLLYAKLEEEH-G----------LARHAMSIYERATS-AV 616 (835)
T ss_pred HHHHHHHHHHhcCCHH-------------------HHHHHHHHHHHHHHHh-h----------HHHHHHHHHHHHHh-cC
Confidence 8888888888754421 1122333444432221 2 33457778887543 45
Q ss_pred CCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHH-h--hccccchHHHHHHHHHHHhh-cCCCcchhH
Q 002814 642 KPNVV--TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGL-L--MGYRDNIWVQALSLFDEVKL-MDSSTASAF 715 (877)
Q Consensus 642 ~Pd~~--t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l-~--~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~ 715 (877)
++... .|+..|.--...=-+..-+.+|+++++.=|+.......+ + +....|..++|..++.-.-+ .+|..+..+
T Consensus 617 ~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~f 696 (835)
T KOG2047|consen 617 KEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEF 696 (835)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHH
Confidence 55443 366555433222223344566666665444332221111 1 11256777888888777655 567777888
Q ss_pred HHHHHHHHHhcCchhhHHHH
Q 002814 716 YNALTDMLWHFGQKRGAQLV 735 (877)
Q Consensus 716 ~~~l~~~~~~~g~~~~A~~~ 735 (877)
|++.=+.-.+.|+-+--+++
T Consensus 697 W~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 697 WDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHH
Confidence 88888887888885443433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.8e-12 Score=128.12 Aligned_cols=222 Identities=12% Similarity=0.046 Sum_probs=133.7
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 002814 450 GKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAV 529 (877)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 529 (877)
.-.|+.-.|..-|+..++....++ ..|.-+..+|....+.++..+.|++..+.+.. |..+|..-...+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 335566666666666655432211 12555555566666666666666666554432 4445555555555555666666
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHH
Q 002814 530 SLLDEMTKEGIRPNV-VTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQL 608 (877)
Q Consensus 530 ~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (877)
.-|++.+.. .|+. ..|..+.-+..+.++++++...++++.+.+|+
T Consensus 415 aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-------------------------------- 460 (606)
T KOG0547|consen 415 ADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-------------------------------- 460 (606)
T ss_pred HHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------------------------------
Confidence 666666552 3332 24444444444444444444444444333332
Q ss_pred HHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHH---
Q 002814 609 VAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGL--- 685 (877)
Q Consensus 609 ~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l--- 685 (877)
-..+|+....++...++++.|.+.|+.++++.|..+++..+.
T Consensus 461 -----------------------------------~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 461 -----------------------------------CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred -----------------------------------CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 223455555566666778888888888777766633332221
Q ss_pred ----hhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 686 ----LMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 686 ----~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
++.. -.+++.+|+.++++++++|| ...-.|-+|+.+....|+.++|.++|+++....
T Consensus 506 V~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 506 VHKALLVLQWKEDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hhhhHhhhchhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1111 35788999999999999999 567789999999999999999999999876543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.8e-10 Score=112.66 Aligned_cols=354 Identities=12% Similarity=0.106 Sum_probs=192.6
Q ss_pred HHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002814 176 IQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMK 255 (877)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 255 (877)
++-|+..++.+ -.+...+......-..++++..|+.+|++++.... .+...|.-.+.+-.++.++..|..++++..
T Consensus 59 RkefEd~irrn---R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAv 134 (677)
T KOG1915|consen 59 RKEFEDQIRRN---RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAV 134 (677)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 56676666664 22334455555555667778888888888887653 367788888888888888888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Q 002814 256 RYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIF 335 (877)
Q Consensus 256 ~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 335 (877)
..=+..|.. |.-.+..--..| +...|.++|++-.. +.|+...|.+.|+.-.+...++.|..+|++.+- +.|++.
T Consensus 135 t~lPRVdql-WyKY~ymEE~Lg-Ni~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~ 208 (677)
T KOG1915|consen 135 TILPRVDQL-WYKYIYMEEMLG-NIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVS 208 (677)
T ss_pred HhcchHHHH-HHHHHHHHHHhc-ccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHH
Confidence 632222222 222233333445 67777777777765 477777777777777777777777777777765 347777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYA 415 (877)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 415 (877)
+|.-....-.+.|++..|..+|+...+. +. |...- ...++++...-.
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~-~~-~d~~~-------------------------------e~lfvaFA~fEe 255 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEF-LG-DDEEA-------------------------------EILFVAFAEFEE 255 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHH-hh-hHHHH-------------------------------HHHHHHHHHHHH
Confidence 7777777777777777777777765542 00 11111 112222222233
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCH---HHHHH-----HHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 416 KLGRFEEALLVCKEMESSGIRKD--AVTYNALLGGYGKQGKY---DEVRR-----MFEQMKADCVSPNLLTYSTLIDVYS 485 (877)
Q Consensus 416 ~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~---~~A~~-----~~~~m~~~g~~p~~~t~~~li~~~~ 485 (877)
++..++.|..+|+-.++.- +.+ ...|..+...--+-|+. ++++- -++.+++. -+-|..+|--.+..-.
T Consensus 256 ~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e 333 (677)
T KOG1915|consen 256 RQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEE 333 (677)
T ss_pred HHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHH
Confidence 3344455555554444331 212 22232232222222332 22211 12223332 1335555555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH----H-H---HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-
Q 002814 486 KGGLYKEAMQIFREFKQAGLKADV--VLYSALI----D-A---LCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAF- 554 (877)
Q Consensus 486 ~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li----~-~---~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~- 554 (877)
..|+.+...++|++.+.. ++|-. ..|.-.| + + -....+++.+.++|+..++. ++-..+||..+--.|
T Consensus 334 ~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA 411 (677)
T KOG1915|consen 334 SVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYA 411 (677)
T ss_pred hcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHH
Confidence 556666666666666543 22211 1111111 1 1 12356677777777777763 333344655444433
Q ss_pred ---hhcCChhhhHHHHHHHhhhhhh
Q 002814 555 ---GRSATTECTVDDVERDLGKQKE 576 (877)
Q Consensus 555 ---~~~g~~~~a~~~~~~~l~~~~~ 576 (877)
.++-++..|.+++..+++..|.
T Consensus 412 ~feIRq~~l~~ARkiLG~AIG~cPK 436 (677)
T KOG1915|consen 412 QFEIRQLNLTGARKILGNAIGKCPK 436 (677)
T ss_pred HHHHHHcccHHHHHHHHHHhccCCc
Confidence 3445555555555555544443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-11 Score=132.74 Aligned_cols=283 Identities=13% Similarity=0.053 Sum_probs=164.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHHHHH
Q 002814 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTY--NTLLDAICKGAQMDLAFEI 356 (877)
Q Consensus 279 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~ 356 (877)
+++.|.+.+....+..-. ....|........+.|+++.|.+.+.++.+. .|+...+ ......+...|+++.|.+.
T Consensus 99 d~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 99 DYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 566666555544332111 1112222223335566666666666666553 2332211 1224555666666666666
Q ss_pred HHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 002814 357 MAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR-------VSYNTVLSIYAKLGRFEEALLVCKE 429 (877)
Q Consensus 357 ~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-------~~~~~li~~~~~~g~~~~A~~~~~~ 429 (877)
++++.+.... +...+..+...|.+.|++++|.+++..+.+.+...+. .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 6666555422 4555666666666666666666666666655433211 1222233333333444555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 002814 430 MESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADV 509 (877)
Q Consensus 430 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 509 (877)
+.+. .+.+......+...+...|+.++|.+++++..+. .+|.... ++.+....++.+++.+..+...+... -|.
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P-~~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG-DTP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-CCH
Confidence 4322 1456677777777778888888888888777764 3344211 23333445777788888777776642 356
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhh
Q 002814 510 VLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (877)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~ 573 (877)
..+.++...|.+.|++++|.+.|+.+.+ ..|+..++..+..++.+.|+.++|.+.+.+++..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6677777788888888888888888876 3677777777888888888888887777776653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.3e-11 Score=121.49 Aligned_cols=399 Identities=15% Similarity=0.083 Sum_probs=269.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002814 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYG 239 (877)
Q Consensus 160 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 239 (877)
....+.+.++|.+++|++.|.+++... ++.+..|.....+|...|++++..+--.++++..+. -+.++.--.+++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 345667889999999999999999985 443678999999999999999999999988886422 3567777777888
Q ss_pred hcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHH------
Q 002814 240 RSGYCQEAISVFNSM-KRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNG--VQPDRITFNSLLAVCS------ 310 (877)
Q Consensus 240 ~~g~~~~A~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~------ 310 (877)
..|++++|+.-..-. +..|+. |..+--.+=+.+-+.+ ..++.+-+. ..+ +-|......+....+.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~a--~~ka~e~~k---~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQA--MKKAKEKLK---ENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHHH--HHHHHHhhc---ccCCCCCCcHHHHHHHHhhcccccccc
Confidence 888888876433322 122222 2222111112222211 112222211 111 2233322222222211
Q ss_pred -----------------h--CC---CHHHHHHHHHHHHHc---CCCCC---------HHHHHHHHHHHHHcCCHHHHHHH
Q 002814 311 -----------------R--GG---LWEAARNLFNEMVHR---GIDQD---------IFTYNTLLDAICKGAQMDLAFEI 356 (877)
Q Consensus 311 -----------------~--~g---~~~~A~~~~~~m~~~---g~~~~---------~~~~~~li~~~~~~g~~~~A~~~ 356 (877)
. .+ .+..|...+.+-... ...-+ ..+...-...+.-.|+.-.|.+-
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 0 01 223333322222111 00111 11122222234457888899999
Q ss_pred HHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 002814 357 MAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIR 436 (877)
Q Consensus 357 ~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 436 (877)
|+..+..... +...|--+..+|....+-++..+.|.+....+ +-|..+|..-..++.-.+++++|..=|++.+... +
T Consensus 349 ~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-p 425 (606)
T KOG0547|consen 349 FDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-P 425 (606)
T ss_pred HHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-h
Confidence 9998876443 23338788889999999999999999998876 5577788888888888999999999999999876 5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHHH
Q 002814 437 KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK-----ADVVL 511 (877)
Q Consensus 437 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~~ 511 (877)
-+...|..+..+..+.+++++++..|++.+++ ++.-...|+.....+...+++++|.+.|+..++.... .+...
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 67788888888888999999999999999987 5667899999999999999999999999998874211 12222
Q ss_pred H--HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCChhhhHHHHHHHhhhhh
Q 002814 512 Y--SALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (877)
Q Consensus 512 ~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~l~~~~ 575 (877)
+ -.++-.- -.+++..|+.++++.++. .|... .|.+|...-.+.|++++|+++++++..+..
T Consensus 505 lV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 505 LVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2 1222221 248899999999999984 55554 899999999999999999999988776543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-09 Score=112.58 Aligned_cols=332 Identities=12% Similarity=0.051 Sum_probs=238.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHH--
Q 002814 223 GYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRI-- 300 (877)
Q Consensus 223 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~-- 300 (877)
+...|...+-.....+.+.|....|++.|......- +-+-.+|-.|...+. +.+.+ ..... |...|..
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit----~~e~~----~~l~~-~l~~~~h~M 228 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT----DIEIL----SILVV-GLPSDMHWM 228 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc----hHHHH----HHHHh-cCcccchHH
Confidence 444566666666667788899999999999887531 113344444433332 22222 22222 2222221
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCC--CCHHHHHHHHHH
Q 002814 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS--PNVVTYSTMIDG 378 (877)
Q Consensus 301 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--pd~~~~~~li~~ 378 (877)
.--.+..++....+.+++.+-.+.....|++.+...-+....+.....++|+|+.+|+++.+...- -|..+|+.++-.
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 122345667777788999998999999888877776666677777888999999999999876321 266777776643
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 379 YAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEV 458 (877)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 458 (877)
+..+-. +..+-+-...--+--..|...+.+.|+-.++.++|...|++.++.+ +.....|+.+.+-|....+...|
T Consensus 309 --~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 309 --KNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred --HhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence 332221 1122211111013345678888889999999999999999999887 66788899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002814 459 RRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (877)
Q Consensus 459 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (877)
++-++..++- .+.|-..|-.|.++|.-.+...-|+-.|++..+-. +.|...|.+|..+|.+.++.++|++.|......
T Consensus 384 i~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999887 35588899999999999999999999999998764 458899999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhh
Q 002814 539 GIRPNVVTYNSIIDAFGRSATTECTVDDVERDLG 572 (877)
Q Consensus 539 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~ 572 (877)
|-. +...+..|.+.|-+.++.++|.+.+++-++
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 532 557888888899888888888776655443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.6e-11 Score=128.59 Aligned_cols=220 Identities=14% Similarity=0.087 Sum_probs=96.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCH-------HHHHHHHHHHH
Q 002814 308 VCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNV-------VTYSTMIDGYA 380 (877)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-------~~~~~li~~~~ 380 (877)
.+...|+++.|.+.++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444432 123344444444444444444444444444443322111 11222222222
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 381 KAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRR 460 (877)
Q Consensus 381 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 460 (877)
...+.+...++++.+.+. .+.+......+...+...|+.++|..++++..+. .+|.... ++.+....++.+++.+
T Consensus 241 ~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred HhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence 233333333333333221 1234444455555555555555555555555442 2333211 1222223355555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 461 MFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 461 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
..++..+. .+-|...+..+...|.+.+++++|.+.|+.+.+. .|+...|..+...+.+.|+.++|..++++-.
T Consensus 316 ~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 316 VLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555444 2223444455555555555555555555555543 3555555555555555555555555555543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.5e-11 Score=132.78 Aligned_cols=292 Identities=13% Similarity=0.044 Sum_probs=176.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHH
Q 002814 204 GRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHV 283 (877)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a 283 (877)
...|+++.|++.+.+..+.... ....+-....++.+.|+++.|.+.|.+..+....++....-.....+...| +++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~-~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN-ELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC-CHHHH
Confidence 4567777777777776664322 233334445666677777777777777665332222223333355566667 77777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HHcCCHHHHHHHHHH
Q 002814 284 VEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYN-TLLDAI---CKGAQMDLAFEIMAE 359 (877)
Q Consensus 284 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~---~~~g~~~~A~~~~~~ 359 (877)
.+.++.+.+.... +...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+..
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 7777777766433 5556667777777777777777777777776543 222221 111111 222222222333333
Q ss_pred chhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 360 MPAKN---ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVS---YNTVLSIYAKLGRFEEALLVCKEMESS 433 (877)
Q Consensus 360 m~~~g---~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 433 (877)
+.+.. .+.+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 33221 1126677777778888888888888888887776 333331 111112223346777778888777665
Q ss_pred CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 434 GIRKDA--VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 434 g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
. +.|. ....++...+.+.|++++|.+.|+........||...+..+...+.+.|+.++|.+++++...
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 4445 566677888888888888888888533333467777788888888888888888888887543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.6e-11 Score=130.12 Aligned_cols=291 Identities=10% Similarity=0.021 Sum_probs=211.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 002814 239 GRSGYCQEAISVFNSMKRYNLKPN-LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEA 317 (877)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 317 (877)
...|+++.|.+.+.+..+.. |+ ...|-....+..+.| +.+.|.+++.++.+....++..........+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g-~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRG-DEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 36799999999998887753 44 333444456677778 999999999998775333222344445778888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHH-HHHHHHH---HHcCCHHHHHHHHH
Q 002814 318 ARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTY-STMIDGY---AKAGRLDDALNMFS 393 (877)
Q Consensus 318 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~-~~li~~~---~~~g~~~~A~~~~~ 393 (877)
|...++.+.+.. +-+..++..+...|.+.|++++|.+++..+.+.++. +...+ .....++ ...+..+++.+.+.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999875 346778889999999999999999999999988654 33333 2222222 33344444455666
Q ss_pred HHHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 394 EMKFLGI---GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVT---YNALLGGYGKQGKYDEVRRMFEQMKA 467 (877)
Q Consensus 394 ~m~~~g~---~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (877)
.+.+... +.+...+..+...+...|+.++|.+++++..+.. ||... .....-.....++.+.+.+.+++..+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 6655421 1377888889999999999999999999998864 33321 11222223345788889999988877
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 468 DCVSPNL--LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 468 ~g~~p~~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
. .+-|. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 N-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred h-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 23344 566788999999999999999999543333468888888999999999999999999998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.6e-12 Score=133.38 Aligned_cols=282 Identities=17% Similarity=0.131 Sum_probs=196.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCCHHHHHH
Q 002814 208 KVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNL--KPNLVTYNAVIDACGKGGVDFKHVVE 285 (877)
Q Consensus 208 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~~a~~ 285 (877)
+..+|...|+..... ...+..+...+.++|...+++++|..+|+.+.+... .-+...|.+.+--+-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-----hHHHH
Confidence 456788888885544 333456777788888888888888888888876431 1156677777665432 12222
Q ss_pred HH-HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhC
Q 002814 286 IF-DDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQ-DIFTYNTLLDAICKGAQMDLAFEIMAEMPAK 363 (877)
Q Consensus 286 ~~-~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 363 (877)
++ +.++.. -+-...+|.++.++|.-+++.+.|++.|++.++.. | ..++|+.+..-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22 223332 12356788888888888888888888888888753 3 6778888888888888888888888877654
Q ss_pred CCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 002814 364 NISPNVVTYST---MIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAV 440 (877)
Q Consensus 364 g~~pd~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 440 (877)
|...||+ +.-.|.+.++++.|.-.|++..+.+ +-+.+....+...+.+.|+.|+|+.+|++....+ +.|+.
T Consensus 485 ----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l 558 (638)
T KOG1126|consen 485 ----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPL 558 (638)
T ss_pred ----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCch
Confidence 4444444 5667888888888888888877664 5566677777777888888888888888887766 45555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002814 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL 505 (877)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 505 (877)
.-...+..+...+++++|+..++++++. ++-+...+..+...|-+.|+.+.|+.-|.-+.+...
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 5555666677778888888888887775 333456667777777777777777777777666543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=145.06 Aligned_cols=258 Identities=17% Similarity=0.155 Sum_probs=61.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 002814 200 ISILGRLGKVDLAKNIFETALNEG-YGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGV 278 (877)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 278 (877)
...+.+.|++++|++++++..... ...+...|..+.......++++.|++.++++...+.. +...+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~- 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG- 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc-
Confidence 444444455555555553322221 1223344444444444445555555555555443222 23333333333 3334
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG-IDQDIFTYNTLLDAICKGAQMDLAFEIM 357 (877)
Q Consensus 279 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 357 (877)
++++|.+++++..+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.|
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445555444444332 1233334444444445555555555554443321 1234444444444555555555555555
Q ss_pred HHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002814 358 AEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK 437 (877)
Q Consensus 358 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 437 (877)
++..+.... |....+.++..+...|+.+++.++++...... +.|...+..+..+|...|+.++|+..|++..+.. +.
T Consensus 170 ~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 544443211 34444444445555555555444444443332 2233344444555555555555555555544433 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 438 DAVTYNALLGGYGKQGKYDEVRRMFEQM 465 (877)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 465 (877)
|..+...+.+++.+.|+.++|.++..+.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 4444445555555555555555544443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.4e-12 Score=134.73 Aligned_cols=287 Identities=13% Similarity=0.120 Sum_probs=223.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHH-HHHH
Q 002814 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG--IDQDIFTYNTLLDAICKGAQMD-LAFE 355 (877)
Q Consensus 279 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~-~A~~ 355 (877)
+..+|+..|++.... +.-+.++...+.++|...+++++|+++|+.+.+.. ...+..+|.+.+.-+-+.=... -|.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 567899999995444 33344677788899999999999999999998763 1236778888776554322211 2333
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 002814 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI 435 (877)
Q Consensus 356 ~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 435 (877)
+.+.+. -...+|-++.++|.-+++++.|++.|++.++.+ +-...+|+.+..-+.....+|.|...|+..+...
T Consensus 413 Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 413 LIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 333333 267899999999999999999999999998774 3367899999999999999999999999988543
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002814 436 RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSAL 515 (877)
Q Consensus 436 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 515 (877)
+.+-..|.-|...|.|.++++.|.-.|+++.+.+ +-+.+....+...+.+.|+.++|+++|+++.....+ |+..---.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 2334444556778999999999999999999864 336677777888899999999999999999887644 55555566
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 516 IDALCKNGLVESAVSLLDEMTKEGIRPNV-VTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
+..+...+++++|+..|+++++ +.|+. ..|..+...|-+.|+.+.|+.-+.-++.+.|..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 7778889999999999999998 45665 488888899999999999988777777766643
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=143.01 Aligned_cols=259 Identities=19% Similarity=0.188 Sum_probs=75.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC
Q 002814 306 LAVCSRGGLWEAARNLFNEMVHRG-IDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR 384 (877)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~ 384 (877)
...+.+.|++++|.+++++..... ...|...|..+...+...++++.|++.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 445555555666665554333222 1223444444445555555566666666655554322 33344444444 45566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG-IRKDAVTYNALLGGYGKQGKYDEVRRMFE 463 (877)
Q Consensus 385 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 463 (877)
+++|.+++.+..+. .++...+...+..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666655554433 2344445555555666666666666666554321 23455555666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 002814 464 QMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN 543 (877)
Q Consensus 464 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 543 (877)
+.++.. +-|....+.++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|+.+|++..+.. +.|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 666541 2235555666666666666666666665555432 2344455666666666666666666666665531 224
Q ss_pred HHHHHHHHHHHhhcCChhhhHHHHHHHh
Q 002814 544 VVTYNSIIDAFGRSATTECTVDDVERDL 571 (877)
Q Consensus 544 ~~~~~~li~~~~~~g~~~~a~~~~~~~l 571 (877)
..+...+.+++.+.|+.++|.++..+++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 4455566666666666666666555544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.3e-10 Score=116.59 Aligned_cols=506 Identities=12% Similarity=0.039 Sum_probs=304.4
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002814 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (877)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 234 (877)
+...+..+++-+..+.++..|.-+-+++...... |. -.--++.++.-.|++..|..+...-.-. ..|..+....
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~d-p~---d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~ 88 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTND-PA---DIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLA 88 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCC-hH---HHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHH
Confidence 3556777777777888888888877777766522 22 2344677777778888887776654322 2367777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 002814 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (877)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 314 (877)
...+.+..++++|..++.+... .-+...|..-=.+.. - ..+.+. ++.. .......+-.-...|....+
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~~~~--l-~~n~~~----~~~~--~~~essic~lRgk~y~al~n 156 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDAANT--L-ELNSAG----EDLM--INLESSICYLRGKVYVALDN 156 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccch---hhcchhhcchhhhce--e-ccCccc----cccc--ccchhceeeeeeehhhhhcc
Confidence 7888888889998888874311 111111111000000 0 111111 0000 01111111112234555666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHchhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 315 WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG-AQMDLAFEIMAEMPAK-NISPNVVTYSTMIDGYAKAGRLDDALNMF 392 (877)
Q Consensus 315 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~-g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 392 (877)
.++|+..|.+.+.. |+..+.++...-... =..++-.++|+.+.-. -..-++.....+.....-...-++....-
T Consensus 157 ~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~ 232 (611)
T KOG1173|consen 157 REEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRN 232 (611)
T ss_pred HHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccC
Confidence 77777777777664 454444443322111 0111223333321100 00112222222222221111111111111
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002814 393 SEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP 472 (877)
Q Consensus 393 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 472 (877)
++..-.+..-+........+-|...+++.+..++++.+.+.. +++...+-.-|..+...|+..+-..+=.++.+. .+-
T Consensus 233 ~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~ 310 (611)
T KOG1173|consen 233 EDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPS 310 (611)
T ss_pred chhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCC
Confidence 111112334566666777778888899999999999988776 677777777788888888888877777788776 344
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 552 (877)
...+|-++..-|...|+..+|.+.|.+....+. .=...|-.+...|.-.|..|+|+..|..+.+. +.-...-+--+.-
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGM 388 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHH
Confidence 678899999888888999999999988876431 13468888899999999999999988887664 1112222333444
Q ss_pred HHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHH
Q 002814 553 AFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGV 632 (877)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~ 632 (877)
-|.+.+.++.|.+.+.+++...|..+-+..-++...+. .+.+.+|+.+
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~--------------------------------~~~y~~A~~~ 436 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT--------------------------------YEEYPEALKY 436 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh--------------------------------HhhhHHHHHH
Confidence 57888899999999999999888776332222111110 1256677777
Q ss_pred HHHHHHC--CCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHh
Q 002814 633 FQKMHKL--KIKP----NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVK 705 (877)
Q Consensus 633 ~~~m~~~--g~~P----d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~ 705 (877)
|+..+.. .+.+ =..+++.|+.+|.+.+.+++|+..|++.+...|++..+-..+...+ ..|+++.|++.|.+++
T Consensus 437 f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 437 FQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 7776521 1111 2335888999999999999999999999888887776655544333 5788899999999998
Q ss_pred hcCCCcchhHHHHH
Q 002814 706 LMDSSTASAFYNAL 719 (877)
Q Consensus 706 ~~~~~~~~~~~~~l 719 (877)
.+.| .|..+-..|
T Consensus 517 ~l~p-~n~~~~~lL 529 (611)
T KOG1173|consen 517 ALKP-DNIFISELL 529 (611)
T ss_pred hcCC-ccHHHHHHH
Confidence 8888 444433333
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-10 Score=112.17 Aligned_cols=288 Identities=13% Similarity=0.123 Sum_probs=196.6
Q ss_pred cCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHH
Q 002814 169 RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGN---TVYAFSALISAYGRSGYCQ 245 (877)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~ 245 (877)
..+.++|++.|..+.+.. +.+..+.-+|.+.|.+.|..|.|+++++.+.++---+ -..+...|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d---~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED---PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcC---chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 457889999999998864 5556677889999999999999999999988751110 1345566788899999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHH
Q 002814 246 EAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDR----ITFNSLLAVCSRGGLWEAARNL 321 (877)
Q Consensus 246 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~ 321 (877)
.|.++|..+...+.. -..+...|+..|-... ++++|+++-+++.+.+-++.. ..|.-|...+....+++.|+.+
T Consensus 125 RAE~~f~~L~de~ef-a~~AlqqLl~IYQ~tr-eW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 125 RAEDIFNQLVDEGEF-AEGALQQLLNIYQATR-EWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred HHHHHHHHHhcchhh-hHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999998874422 4567778888898888 999999999988887655443 2355566666667788888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 002814 322 FNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIG 401 (877)
Q Consensus 322 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 401 (877)
+.+..+.+. ..+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+..
T Consensus 203 l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 888877642 23444555667778888888888888888877443334566777778888888888888888777653
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 002814 402 LDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK---QGKYDEVRRMFEQMK 466 (877)
Q Consensus 402 pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~ 466 (877)
+....-..+........-.+.|...+.+-+.. .|+...+..+|+.-.. .|...+-..+++.|.
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 23333333333333333344454444443333 5777777777765432 233444444555554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-09 Score=107.13 Aligned_cols=273 Identities=12% Similarity=0.012 Sum_probs=150.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002814 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVS-YNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALL 446 (877)
Q Consensus 368 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 446 (877)
|+.....+.+.|...|+.++|+..|++.... .|+.++ ...-.-.+.+.|+++....+...+.... .-...-|-.-+
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 4444555555555555555555555554433 222211 1111122345555555555555554322 11222333333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH
Q 002814 447 GGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (877)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 526 (877)
......++++.|+.+-++.++.. +-+...|-.-...+...|+.++|.--|+..+... +.+...|..|+.+|...|++.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 44445566666666666665542 2234444444455566666666666666665532 235666777777777777766
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-hcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHH
Q 002814 527 SAVSLLDEMTKEGIRPNVVTYNSII-DAFG-RSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKV 604 (877)
Q Consensus 527 ~A~~~~~~m~~~g~~p~~~~~~~li-~~~~-~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (877)
||.-+-+..... +.-+..+.+.+. ..|. ....-|+|..++++.+...|.-. ...+.+.++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~-----------------~AV~~~AEL 447 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYT-----------------PAVNLIAEL 447 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccH-----------------HHHHHHHHH
Confidence 666555444332 222334444331 2222 22223567777777776655421 001111111
Q ss_pred HHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchh
Q 002814 605 FGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYG 680 (877)
Q Consensus 605 ~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~ 680 (877)
.. ..|.+.+++.++++-+. ..||....+.|++.+...+.+++|.+.|..++.+||++-.
T Consensus 448 ~~---------------~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 448 CQ---------------VEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HH---------------hhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 11 01255667888888776 6799999999999999999999999999999999998743
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-10 Score=109.74 Aligned_cols=278 Identities=14% Similarity=0.132 Sum_probs=183.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC------HHHHHH
Q 002814 266 YNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD------IFTYNT 339 (877)
Q Consensus 266 ~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~ 339 (877)
|..-++.+... +.++|.++|-+|.+.... +..+-.+|.+.|.+.|..|.|+++++.+.+. || ......
T Consensus 39 Yv~GlNfLLs~--Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~q 112 (389)
T COG2956 39 YVKGLNFLLSN--QPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQ 112 (389)
T ss_pred HHhHHHHHhhc--CcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHH
Confidence 33334443333 467788888887764221 3344556777788888888888888777765 33 234455
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHH
Q 002814 340 LLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRV----SYNTVLSIYA 415 (877)
Q Consensus 340 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----~~~~li~~~~ 415 (877)
|..-|...|-+|.|+++|..+.+.+.- -......|+..|-...+|++|+++-+++.+.+-.+..+ -|.-|...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 666777788888888888877765322 34556677888888888888888888777665343322 3455556666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002814 416 KLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQ 495 (877)
Q Consensus 416 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 495 (877)
...+++.|..++.+..+.+ +..+..-..+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++...
T Consensus 192 ~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 192 ASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6677888888888887765 445556566777888888888888888888877433334566777888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 002814 496 IFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFG 555 (877)
Q Consensus 496 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 555 (877)
.+..+.+... ....-..+...-....-.+.|...+.+-+.. .|+...+..|++.-.
T Consensus 271 fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 271 FLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 8888877542 3333333443333333445555555544442 588888888887653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-08 Score=109.80 Aligned_cols=485 Identities=14% Similarity=0.097 Sum_probs=242.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 002814 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC---GKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (877)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 314 (877)
+.+.+..++++.-+......+..-+..++-.+..++ ...+ +.+++ ++-..+..-+-|....+.+.+..
T Consensus 237 w~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~-~~Ee~--~Lllli~es~i~Re~~~d~ilsl------ 307 (799)
T KOG4162|consen 237 WKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKS-GQEEV--ILLLLIEESLIPRENIEDAILSL------ 307 (799)
T ss_pred hcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCC-cHHHH--HHHHHHHhhccccccHHHHHHHH------
Confidence 445566677777777777666655666665554442 3334 44444 33333332233332222222111
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002814 315 WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSE 394 (877)
Q Consensus 315 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 394 (877)
.-.+.++....+..|...|..|.-+..++|+++.+.+.|++....-+. ....|+.+...|...|.-..|..++++
T Consensus 308 ----m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~ 382 (799)
T KOG4162|consen 308 ----MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRE 382 (799)
T ss_pred ----HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 111222322234456777777777788888888888888876654222 556677778888888888888888776
Q ss_pred HHHCCCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHc-----------CCHHH
Q 002814 395 MKFLGIGLDRVSYNTVL-SIYA-KLGRFEEALLVCKEMESS--GI--RKDAVTYNALLGGYGKQ-----------GKYDE 457 (877)
Q Consensus 395 m~~~g~~pd~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~ 457 (877)
-....-.|+..+-..++ ..|. +.+.+++++..-.+++.. +. ......|-.+.-+|... ....+
T Consensus 383 ~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~k 462 (799)
T KOG4162|consen 383 SLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKK 462 (799)
T ss_pred hcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHH
Confidence 55443234333332333 3333 446667766666655541 11 12344455554444322 12445
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 458 VRRMFEQMKADC-VSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 458 A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
+.+.+++..+.+ -.|++..|-++ -|+..++++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+...
T Consensus 463 slqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 667777776654 33444444333 355667788888888888776555677788877777777888888888877766
Q ss_pred HCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhc-----cchhHHHHHHHHHHH-
Q 002814 537 KEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAG-----RTDNQIIKVFGQLVA- 610 (877)
Q Consensus 537 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~- 610 (877)
+. ..-|......-+..-...++.++++..+...+...-....+...+..+.......+ ......++...++..
T Consensus 541 ~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 541 EE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred HH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 43 11122211112222223455555555554444433211111100000000000000 000000011110000
Q ss_pred -----HHhcC----Cc------ch---h-------------hhhHhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcC
Q 002814 611 -----EKAGQ----GK------KE---N-------------RCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRC 658 (877)
Q Consensus 611 -----~~~g~----~~------~~---~-------------~~~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~ 658 (877)
+..|- .. .+ + ...+..++|.-.+.+... +.| ....|.-.+..+-..
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVK 697 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHH
Confidence 00000 00 00 0 000111223223333222 223 223344444555556
Q ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccc--hHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHH
Q 002814 659 NSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDN--IWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLV 735 (877)
Q Consensus 659 g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 735 (877)
|.++||.+.|..+...||++..++..+...+ +.| .+.++..+...+++.|| .|..+|..|+.++-+.|+.+.|.+.
T Consensus 698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHH
Confidence 6667777777777667776666655553222 223 23334446667777777 6666677777777777777777766
Q ss_pred HHHhhhh
Q 002814 736 VLEGKRR 742 (877)
Q Consensus 736 ~~~~~~~ 742 (877)
|..+.+.
T Consensus 777 f~aa~qL 783 (799)
T KOG4162|consen 777 FQAALQL 783 (799)
T ss_pred HHHHHhh
Confidence 6665544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.5e-08 Score=102.07 Aligned_cols=525 Identities=12% Similarity=0.119 Sum_probs=330.3
Q ss_pred HHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002814 173 SKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEG-YGNTVYAFSALISAYGRSGYCQEAISVF 251 (877)
Q Consensus 173 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 251 (877)
+..-..|++.+..-. .-+.+|...+..+.++|++...+..|+.++..- +.....+|...+......|-.+-++.+|
T Consensus 85 ~~vn~c~er~lv~mH---kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvy 161 (835)
T KOG2047|consen 85 ESVNNCFERCLVFMH---KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVY 161 (835)
T ss_pred HHHHHHHHHHHHHHh---cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHH
Confidence 333444555444221 123578888889999999999999999997642 2223468888888888899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhCCCHHH---HHHHH
Q 002814 252 NSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNG------VQPDRITFNSLLAVCSRGGLWEA---ARNLF 322 (877)
Q Consensus 252 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~g~~~~---A~~~~ 322 (877)
++..+. +...-+-.|..+++.+ ++++|.+.+...+... .+.+-..|..+-+...+.-+.-. ...++
T Consensus 162 rRYLk~----~P~~~eeyie~L~~~d-~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaii 236 (835)
T KOG2047|consen 162 RRYLKV----APEAREEYIEYLAKSD-RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAII 236 (835)
T ss_pred HHHHhc----CHHHHHHHHHHHHhcc-chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHH
Confidence 999883 3334667788888888 8999999998876431 23344556666666555443332 23333
Q ss_pred HHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC----------------
Q 002814 323 NEMVHRGIDQD--IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR---------------- 384 (877)
Q Consensus 323 ~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~---------------- 384 (877)
..++.+ -+| ...|.+|.+-|.+.|.+++|..+|++.... ...+.-|+.+.+.|..-..
T Consensus 237 R~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n 312 (835)
T KOG2047|consen 237 RGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGN 312 (835)
T ss_pred Hhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 344332 234 467999999999999999999999987764 2244556666666654211
Q ss_pred ------HHHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------CHHH
Q 002814 385 ------LDDALNMFSEMKFLG-----------IGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK------DAVT 441 (877)
Q Consensus 385 ------~~~A~~~~~~m~~~g-----------~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~------~~~~ 441 (877)
++-.+.-|+.+.+.+ -+-+...|..-+. +..|+..+-...|.+.++.- .| -...
T Consensus 313 ~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~L 389 (835)
T KOG2047|consen 313 EEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTL 389 (835)
T ss_pred hhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhH
Confidence 222223333333221 0112222322222 23466777778888876541 22 2356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------
Q 002814 442 YNALLGGYGKQGKYDEVRRMFEQMKADCVSPN---LLTYSTLIDVYSKGGLYKEAMQIFREFKQAG-------------- 504 (877)
Q Consensus 442 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------- 504 (877)
|..+...|-..|+++.|..+|++..+...+-= ..+|..-..+=.+..+++.|+++.+.....-
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 88899999999999999999999887532211 3455555566667788999999887765321
Q ss_pred ---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhh
Q 002814 505 ---LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLD 581 (877)
Q Consensus 505 ---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~ 581 (877)
+..+...|..+++..-..|-++....+|+++++..+. +..+.....-.+-.+.-++++.+.+++.+.+++-+...
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~- 547 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY- 547 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH-
Confidence 0113446777777777889999999999999987654 22222222223455667899999999999887654211
Q ss_pred hhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HcCC
Q 002814 582 AMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNAC--SRCN 659 (877)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~--~~~g 659 (877)
..|+..+.-|-+ ..|- ...+.|..+|++.++ |+.|...-+..|+.|- -..|
T Consensus 548 --------------diW~tYLtkfi~----rygg--------~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~G 600 (835)
T KOG2047|consen 548 --------------DIWNTYLTKFIK----RYGG--------TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHG 600 (835)
T ss_pred --------------HHHHHHHHHHHH----HhcC--------CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhh
Confidence 234443333321 1111 156779999999998 8888776555565553 2558
Q ss_pred CHHHHHHHHHHHHh-cCCcchhHHHHHhhccccc--hHHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHhcCchhhHHHH
Q 002814 660 SFEDASMLLEELRL-FDNQVYGVAHGLLMGYRDN--IWVQALSLFDEVKLMDSST-ASAFYNALTDMLWHFGQKRGAQLV 735 (877)
Q Consensus 660 ~~~eA~~~~~~~~~-~~~~~~~~~~~l~~~~~~~--~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 735 (877)
....|.++++++.. ..+..-..+++++...... -.-.-..+++++++.-|+. ...++--.+++-.+.|..+.|..+
T Consensus 601 Lar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaI 680 (835)
T KOG2047|consen 601 LARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAI 680 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 88889999988753 2222222233332110000 0112234455555544422 244566678888999999999999
Q ss_pred HHHhhh
Q 002814 736 VLEGKR 741 (877)
Q Consensus 736 ~~~~~~ 741 (877)
+.-+.+
T Consensus 681 ya~~sq 686 (835)
T KOG2047|consen 681 YAHGSQ 686 (835)
T ss_pred HHhhhh
Confidence 876643
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.5e-09 Score=111.55 Aligned_cols=453 Identities=13% Similarity=0.065 Sum_probs=285.9
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCC-------
Q 002814 154 CGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALN--EGY------- 224 (877)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~g~------- 224 (877)
.+|.+...+.+++.-.|++++|..+...-.-.+ .+.........++.+..++++|..++..... ..+
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~----~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~ 122 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTYKLEK----RDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA 122 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh
Confidence 467888889999999999998887765432221 2334556667788899999999988873210 000
Q ss_pred ----CCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 002814 225 ----GNTVY-----------AFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDD 289 (877)
Q Consensus 225 ----~~~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~ 289 (877)
..|.. .+-.-...|....+.++|.+.|.+... -|...|..+...... ..-.+.+.++.
T Consensus 123 ~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~----~D~~c~Ea~~~lvs~---~mlt~~Ee~~l 195 (611)
T KOG1173|consen 123 ANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL----ADAKCFEAFEKLVSA---HMLTAQEEFEL 195 (611)
T ss_pred hceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh----cchhhHHHHHHHHHH---HhcchhHHHHH
Confidence 00100 001111234444566777777777665 355454444333221 11222222333
Q ss_pred HHHCC----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCC
Q 002814 290 MLRNG----VQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNI 365 (877)
Q Consensus 290 m~~~g----~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 365 (877)
+.... ..-+......+.....-...-+.....-.+..-.|...+........+-+...+++.+..++++++.+. .
T Consensus 196 l~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-d 274 (611)
T KOG1173|consen 196 LESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-D 274 (611)
T ss_pred HhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-C
Confidence 32211 111222222222221100000111111111111233456667777778888889999999999988876 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002814 366 SPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNAL 445 (877)
Q Consensus 366 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 445 (877)
++....+..-|.++...|+..+-..+=.++.+.- +-...+|-++.-.|.-.|+..+|++.|.+....+ +.-...|-.+
T Consensus 275 pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~f 352 (611)
T KOG1173|consen 275 PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAF 352 (611)
T ss_pred CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHH
Confidence 4466667777778888888888887777887763 5557889888888888899999999998877554 3345678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 002814 446 LGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLV 525 (877)
Q Consensus 446 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 525 (877)
...|+-.|.-|.|+..+...-+. ++-...-+--+..-|.+.++.+.|.++|.+..... +-|+..++-+.-...+.+.+
T Consensus 353 ghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y 430 (611)
T KOG1173|consen 353 GHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEY 430 (611)
T ss_pred hHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhh
Confidence 89999999999999888776553 11122222234455778889999999998887754 44777888887777788889
Q ss_pred HHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchh
Q 002814 526 ESAVSLLDEMTKE--GIR----PNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDN 599 (877)
Q Consensus 526 ~~A~~~~~~m~~~--g~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (877)
.+|..+|+..+.. .+. --..+++.|..+|.+.+++++|+..++++|...+.+.+.. .
T Consensus 431 ~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~-----------------a 493 (611)
T KOG1173|consen 431 PEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTH-----------------A 493 (611)
T ss_pred HHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHH-----------------H
Confidence 9999999887631 011 1234677888889999999999999999998877664322 2
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 600 QIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACS 656 (877)
Q Consensus 600 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~ 656 (877)
++.-.+.. .|.++.|++.|++.+. ++||..+...+|..+.
T Consensus 494 sig~iy~l---------------lgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 494 SIGYIYHL---------------LGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHH---------------hcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 22222221 1366779999998876 8899888777776443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.2e-09 Score=104.41 Aligned_cols=286 Identities=16% Similarity=0.142 Sum_probs=208.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 276 GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFE 355 (877)
Q Consensus 276 ~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 355 (877)
.| ++.+|+++..+..+.+-. ....|..-+.+.-..|+.+.+-+++.++.+.--.++..++-+........|+++.|..
T Consensus 97 eG-~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EG-DFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cC-cHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 46 788888888776666543 2344555556677788888888888888776435567777777788888888888888
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR-------VSYNTVLSIYAKLGRFEEALLVCK 428 (877)
Q Consensus 356 ~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-------~~~~~li~~~~~~g~~~~A~~~~~ 428 (877)
-++++.+.+.. +.........+|.+.|++.+...++..|.+.|.--|. .+|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 88877776544 6677788888888888888888888888887755554 356666666555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002814 429 EMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD 508 (877)
Q Consensus 429 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 508 (877)
.....- +.++..-.+++.-+.++|+.++|.++..+..+++..++.. ..-.+.+.++.+.-.+..++-.+.. +-+
T Consensus 254 ~~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 554332 4566677778888888999999999998888887766622 2223456677777777776665543 235
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhh
Q 002814 509 VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLG 572 (877)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~ 572 (877)
.-.+.+|...|.+.+.+.+|.+.|+...+ ..|+..+|.-+.+++.+.|+.++|.+..++++-
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 57888888889999999999999997776 468888999999999999999888887777764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3e-09 Score=107.87 Aligned_cols=286 Identities=15% Similarity=0.109 Sum_probs=169.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHH
Q 002814 206 LGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVE 285 (877)
Q Consensus 206 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~ 285 (877)
.|+|..|+++..+..+.+.. .+..|..-+.+.-..|+.+.|-.++.+..+.--.++...+-+........| ++..|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~-d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR-DYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC-CchhHHH
Confidence 46666666666665555433 233444444555556666666666666655322344444555555555555 6666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 286 IFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD-------IFTYNTLLDAICKGAQMDLAFEIMA 358 (877)
Q Consensus 286 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~ 358 (877)
-.+++.+.+.. +.........+|.+.|++.....++..|.+.|.-.| ..+|+.+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 66666555433 445555556666666666666666666666654333 2355666666655555555555666
Q ss_pred HchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 002814 359 EMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD 438 (877)
Q Consensus 359 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 438 (877)
+...+ .+-+...-.+++.-+.++|+.++|.++.++..+.+..+... ..-.+.+-++.+.-++..++-.+.. +.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 55543 23345555666666777777777777777776665444411 1123345566666666655554432 345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 439 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
+..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.++|.+.|+.++|.+++++...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 566777777777777777777777766654 56777777777777777777777777766553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-07 Score=101.75 Aligned_cols=222 Identities=18% Similarity=0.207 Sum_probs=102.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 002814 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEA 317 (877)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 317 (877)
+...|+-++|.+....-.+..+. +.++|+.+.-.+.... ++++|++.|..+...+.. |...+.-|.-.-...|+++.
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK-~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDK-KYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhh-hHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhh
Confidence 33444555555444444433322 3444444444443333 455555555555443221 33333333333344444444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC-CCCCHHHHHHHH------HHHHHcCCHHHHHH
Q 002814 318 ARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN-ISPNVVTYSTMI------DGYAKAGRLDDALN 390 (877)
Q Consensus 318 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~~~~~li------~~~~~~g~~~~A~~ 390 (877)
......++.+.. +..-..|..++.++.-.|++..|..++++..+.. -.|+...|.-.. ....+.|..++|.+
T Consensus 128 ~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 128 YLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 444444444321 1133445555555555555555555555554432 123333332221 22344566666666
Q ss_pred HHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHH-HHHHHHHH
Q 002814 391 MFSEMKFLGIGLDRVSY-NTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA-LLGGYGKQGKYDEVR-RMFEQMKA 467 (877)
Q Consensus 391 ~~~~m~~~g~~pd~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~A~-~~~~~m~~ 467 (877)
.+..-... ..|...+ .+-.+.+.+.+++++|..++..++... ||...|+. +..++.+-.+.-++. .+|....+
T Consensus 207 ~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 207 HLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 55544332 2233332 233455667777777777777777654 44444443 333443333333333 55555443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.5e-08 Score=104.35 Aligned_cols=399 Identities=14% Similarity=0.148 Sum_probs=260.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
+++.| ..+++...+++.+.+++.. +..+.+.....-.+...|+-++|.......+...+. +.+.|..+.-.+...
T Consensus 14 ~lk~y-E~kQYkkgLK~~~~iL~k~---~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 14 ALKCY-ETKQYKKGLKLIKQILKKF---PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHH-HHHHHHhHHHHHHHHHHhC---CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhh
Confidence 34433 4678888999998888854 333445566666788899999999999998876554 778999998888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 002814 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNL 321 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 321 (877)
.++++|+.+|......+.. |...|.-+--.-.+.+ +++.......+..+... -....|..++.++.-.|++..|..+
T Consensus 89 K~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmR-d~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMR-DYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999885533 5556655554455666 77777777777766522 2455677788888889999999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHH------HHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002814 322 FNEMVHRG-IDQDIFTYNTLLD------AICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSE 394 (877)
Q Consensus 322 ~~~m~~~g-~~~~~~~~~~li~------~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 394 (877)
+++..+.. -.++...|..... ...+.|..++|.+.+..-... +.-....-.+....+.+.+++++|..++..
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 99988764 2456655544433 345678888898888766543 221233345667889999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHH-HcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002814 395 MKFLGIGLDRVSYNTVLSIYA-KLGRFEEAL-LVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP 472 (877)
Q Consensus 395 m~~~g~~pd~~~~~~li~~~~-~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 472 (877)
++.. .||...|...+..+. +--+.-++. .+|....+.- +.....-..=+....-..-.+....++..+.++|+++
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~ 321 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS 321 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence 9988 678777766655443 344444444 6666554431 1111110001111111223344556677777887654
Q ss_pred CHHHHHHHHHHHHhcCCHH---H-HHHHHHHHHHCC----------CCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHH
Q 002814 473 NLLTYSTLIDVYSKGGLYK---E-AMQIFREFKQAG----------LKADVVLYS--ALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~---~-A~~~~~~m~~~g----------~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
- +..+...|-.-...+ + +..+...+...| -+|....|. .++..+-+.|+++.|...++..+
T Consensus 322 v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 322 V---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred h---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 3 333333332222111 1 111111111111 145555444 56777888999999999999998
Q ss_pred HCCCCCCHH-HHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 537 KEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 537 ~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
++ .|+.+ -|..-...+...|++++|...++++.+....+
T Consensus 399 dH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 399 DH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred cc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence 75 67665 66666778889999999998888887765443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.7e-10 Score=126.48 Aligned_cols=149 Identities=12% Similarity=-0.056 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 002814 244 CQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFN 323 (877)
Q Consensus 244 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~ 323 (877)
+++|...+++..+.+.. +..++..+...+...| ++++|...|+++++.+.. +...+..+...+...|++++|...++
T Consensus 320 ~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g-~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 320 MIKAKEHAIKATELDHN-NPQALGLLGLINTIHS-EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44444444444443221 3334444444444444 444555555544443211 23334444444444455555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 324 EMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (877)
Q Consensus 324 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (877)
++++.... +...+..++..+...|++++|++.++++.....+-+...+..+..+|...|++++|...+.++.
T Consensus 397 ~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 397 ECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 44443211 1112222222333444455555555444432111123334444444445555555555554443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.7e-08 Score=104.52 Aligned_cols=455 Identities=16% Similarity=0.172 Sum_probs=245.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--h
Q 002814 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYG--R 240 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~--~ 240 (877)
+..+...+++++|.+....++..+ +++..++..-+-++...++|++|+.+.+.-.... .-+.+. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~---pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~---fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV---PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFF---FEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC---CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhh---HHHHHHHHH
Confidence 455677889999999999998875 4555677777788899999999996655432210 011111 345555 7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHH
Q 002814 241 SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP-DRITFNSLLAVCSRGGLWEAAR 319 (877)
Q Consensus 241 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~ 319 (877)
.++.++|+..++-+.. -+..+...-...+.+.+ ++++|+.+|+.+.+.+.+- |...-..++.+-.. -.+.
T Consensus 92 lnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~-~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLE-RYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ 162 (652)
T ss_pred cccHHHHHHHHhcccc----cchHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH
Confidence 8999999999983332 13345555566688888 9999999999998775431 11111222221111 1111
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC-------C------CCCCHH-HHHHHHHHHHHcCCH
Q 002814 320 NLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK-------N------ISPNVV-TYSTMIDGYAKAGRL 385 (877)
Q Consensus 320 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g------~~pd~~-~~~~li~~~~~~g~~ 385 (877)
+.+..... ...+-..+....-.+...|++.+|+++++...+. + +.-+.. .--.|.-.+...|+.
T Consensus 163 -~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 163 -LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred -HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 12222111 1112222333445567789999999999877221 1 110111 122345567788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHcCCHH-HHHHHHHHHHHC-----------CCCCCHHHHHHHHHHH
Q 002814 386 DDALNMFSEMKFLGIGLDRVS----YNTVLSIYAKLGRFE-EALLVCKEMESS-----------GIRKDAVTYNALLGGY 449 (877)
Q Consensus 386 ~~A~~~~~~m~~~g~~pd~~~----~~~li~~~~~~g~~~-~A~~~~~~m~~~-----------g~~~~~~~~~~li~~~ 449 (877)
++|..++...+... .+|... -|.|+.+-....-++ .++..++..... .-.-....-+.++.+|
T Consensus 241 ~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988875 445422 233332211111111 122222221110 0000111122334444
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 002814 450 GKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDV-YSK-GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (877)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 527 (877)
. +..+.+.++-..... ..|... +.+++.. +-. .....+|.+++...-+....-..+..-.++.....+|+++.
T Consensus 320 t--nk~~q~r~~~a~lp~--~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 320 T--NKMDQVRELSASLPG--MSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred h--hhHHHHHHHHHhCCc--cCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 2 333444444333221 233333 3333333 222 22467777777777665433334555666667778899999
Q ss_pred HHHHHH--------HHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchh
Q 002814 528 AVSLLD--------EMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDN 599 (877)
Q Consensus 528 A~~~~~--------~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (877)
|++++. ...+.+..|- +...++..+.+.++-+.|..++.+++..
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~-------------------------- 446 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKW-------------------------- 446 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHH--------------------------
Confidence 999888 4444444333 4445556666666655555554444432
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcc
Q 002814 600 QIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNV-VTFSAILNACSRCNSFEDASMLLEELRLFDNQV 678 (877)
Q Consensus 600 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~ 678 (877)
++.-+. ..+.. .++.-+...--+.|+-++|..+++++.+.++++
T Consensus 447 ---------------------------------~~~~~t--~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d 491 (652)
T KOG2376|consen 447 ---------------------------------WRKQQT--GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND 491 (652)
T ss_pred ---------------------------------HHHhcc--cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch
Confidence 222111 00000 111111112224477788888888888777777
Q ss_pred hhHHHHHhhccccchHHHHHHHHHHH
Q 002814 679 YGVAHGLLMGYRDNIWVQALSLFDEV 704 (877)
Q Consensus 679 ~~~~~~l~~~~~~~~~~~A~~~~~~~ 704 (877)
..++..++.++..-+.++|+.+-+++
T Consensus 492 ~~~l~~lV~a~~~~d~eka~~l~k~L 517 (652)
T KOG2376|consen 492 TDLLVQLVTAYARLDPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhhcC
Confidence 77777776666666677777776644
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-07 Score=92.54 Aligned_cols=372 Identities=12% Similarity=0.177 Sum_probs=199.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002814 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYG 239 (877)
Q Consensus 160 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 239 (877)
.++..++.+.|++++|+..|..+.... ..+..+...+.-++.-.|.+.+|..+-.++.+ +.-.-..|....-
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~---~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlah 132 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKD---DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAH 132 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccC---CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHH
Confidence 345666667777888777777766543 23344556666666667777777776665432 2222333334444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhCCCHHH
Q 002814 240 RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA-CGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLL-AVCSRGGLWEA 317 (877)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~ 317 (877)
+.++-++-..+-+.+.. ...---+|... |.+. .+.+|+++|.+.+.. .|+-...|.-+ -+|.+..-++-
T Consensus 133 klndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~--HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydv 203 (557)
T KOG3785|consen 133 KLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRM--HYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDV 203 (557)
T ss_pred HhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHH--HHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhh
Confidence 55655555444444432 11111112222 3333 477788888777765 33444444433 34566666777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHH
Q 002814 318 ARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA-----GRLDDALNMF 392 (877)
Q Consensus 318 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~-----g~~~~A~~~~ 392 (877)
+.++++-.++. ++.+...-|..+....+.=+-..|.+-..++.+.+-. . --.+.-.++. .+-+.|++++
T Consensus 204 sqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~----~-~~f~~~l~rHNLVvFrngEgALqVL 277 (557)
T KOG3785|consen 204 SQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ----E-YPFIEYLCRHNLVVFRNGEGALQVL 277 (557)
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----c-chhHHHHHHcCeEEEeCCccHHHhc
Confidence 77777666654 3334455555544444433333333333333332111 0 1123333333 2345666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHH
Q 002814 393 SEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG-------KYDEVRRMFEQM 465 (877)
Q Consensus 393 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m 465 (877)
--+.+. -| ..-..|+-.|.+.+++.+|..+.+++. +.++.-|..-.-.++..| .+.-|.+.|+-.
T Consensus 278 P~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV 349 (557)
T KOG3785|consen 278 PSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV 349 (557)
T ss_pred hHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh
Confidence 555432 22 233445666788888888888877664 333333332222333333 345566666655
Q ss_pred HHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 002814 466 KADCVSPNL-LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV 544 (877)
Q Consensus 466 ~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 544 (877)
-+++..-|. .--.++..++.-..++++.+.+++.+..--..-|...+ .+..+++..|++.+|.++|-+...-.++ |.
T Consensus 350 G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~ 427 (557)
T KOG3785|consen 350 GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NK 427 (557)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hh
Confidence 444433332 22334555666667788888777777654333333333 4677888888999998888776554444 55
Q ss_pred HHHHHHH-HHHhhcCChhhhH
Q 002814 545 VTYNSII-DAFGRSATTECTV 564 (877)
Q Consensus 545 ~~~~~li-~~~~~~g~~~~a~ 564 (877)
.+|.+++ .+|.+.++.+.|.
T Consensus 428 ~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 428 ILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHhcCCchHHH
Confidence 5665444 4567777665543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-08 Score=110.13 Aligned_cols=258 Identities=16% Similarity=0.160 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 002814 194 KLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC 273 (877)
Q Consensus 194 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 273 (877)
.+|..+|.-||..|+.+.|- +|.-|.....+.+..+|+.++.+....++.+.+. .|-..||..|+.+|
T Consensus 26 vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 26 VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLLKAY 93 (1088)
T ss_pred hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHHHHH
Confidence 45566666666666666555 5555554444445555666666555555544443 25555666666666
Q ss_pred HcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHH
Q 002814 274 GKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVH-RGIDQDIFTYNTLLDAICKGAQMDL 352 (877)
Q Consensus 274 ~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~ 352 (877)
...| |+.. ++..++ -...+...+...|.-.....++..+.- .+.-||.. +.+....-.|-++.
T Consensus 94 r~hG-Dli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaq 157 (1088)
T KOG4318|consen 94 RIHG-DLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQ 157 (1088)
T ss_pred Hhcc-chHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHH
Confidence 6665 5433 111111 001111122223322222222222111 11223322 23444455677777
Q ss_pred HHHHHHHchhCCCC-CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 353 AFEIMAEMPAKNIS-PNVVTYSTMIDGYAKAG-RLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (877)
Q Consensus 353 A~~~~~~m~~~g~~-pd~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 430 (877)
+++++..+...... |-.+ +++-+.... .+++-..+.+...+ .++..+|..++..-..+|+.+.|..++.+|
T Consensus 158 llkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 77777776543211 1111 233332222 23333333333322 588889999999888899999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002814 431 ESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGL 489 (877)
Q Consensus 431 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 489 (877)
.+.|++.+..-|-.|+.+ .++..-+..++.-|.+.|+.|+..|+..-+..+.++|.
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999988888777777765 77778888888888899999999998887777777555
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-09 Score=105.04 Aligned_cols=229 Identities=14% Similarity=0.064 Sum_probs=143.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHc
Q 002814 197 SAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYN-AVIDACGK 275 (877)
Q Consensus 197 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~ 275 (877)
..+..+|.+.|.+.+|.+.|+..++.. +-+.+|..|.++|.+..+...|+.+|.+-.+. .|-.+||- -+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 456667777777777777777666653 34456666667777777777777777666542 34444443 34444555
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 276 GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFE 355 (877)
Q Consensus 276 ~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 355 (877)
.+ +.++|.++|+...+.. ..++.....+...|.-.++.|.|+++|+++++.|+. +...|+.+.-+|.-.+++|-++-
T Consensus 303 m~-~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 ME-QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HH-hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 55 6677777777766542 224445555555666667777777777777777655 56666666666666777777777
Q ss_pred HHHHchhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 356 IMAEMPAKNISPN--VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS 433 (877)
Q Consensus 356 ~~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 433 (877)
.|++....--.|+ ...|-.+.......|++..|...|+-....+ .-+...++.|.-.-.+.|++++|..++......
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 7666554322222 2345556666666777777777777666553 334566777776667777777777777766543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-07 Score=105.82 Aligned_cols=563 Identities=13% Similarity=0.091 Sum_probs=267.7
Q ss_pred HHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002814 144 DILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEG 223 (877)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 223 (877)
.+++++.....-...|.++..-|....+..+|.++|..+...+ +.+........+.|.+..+++.|..+.-..-+..
T Consensus 480 ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD---atdaeaaaa~adtyae~~~we~a~~I~l~~~qka 556 (1238)
T KOG1127|consen 480 ALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD---ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA 556 (1238)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc
Confidence 3334443333333445555555555555556666666665553 3334455556666666666666665532222111
Q ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHH-
Q 002814 224 YG-NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRIT- 301 (877)
Q Consensus 224 ~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t- 301 (877)
.. .-...|.-+.-.|.+.+++..|+..|+...+..++ |...|..+..+|...| .+..|+++|.++... .|+...
T Consensus 557 ~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sG-ry~~AlKvF~kAs~L--rP~s~y~ 632 (1238)
T KOG1127|consen 557 PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESG-RYSHALKVFTKASLL--RPLSKYG 632 (1238)
T ss_pred hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcC-ceehHHHhhhhhHhc--CcHhHHH
Confidence 00 00111222333445556666666666666654333 5666666777777766 666777777666553 332211
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHcCCHHH-------HHHHHHHchhCCCCCC
Q 002814 302 FNSLLAVCSRGGLWEAARNLFNEMVHR------GIDQDIFTYNTLLDAICKGAQMDL-------AFEIMAEMPAKNISPN 368 (877)
Q Consensus 302 ~~~ll~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~~~~li~~~~~~g~~~~-------A~~~~~~m~~~g~~pd 368 (877)
-.-.....+..|++.+|...++..+.. +..--..++-.+...+.-.|-..+ +++.|.-.......-|
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 111222344566666666666655432 000011222222222222222222 2222222222211112
Q ss_pred HHHHHHHHHHHHHcCCHH--H----HHHH-HHHHHHCCC--------------------CCCHHHHHHHHHHHHH----c
Q 002814 369 VVTYSTMIDGYAKAGRLD--D----ALNM-FSEMKFLGI--------------------GLDRVSYNTVLSIYAK----L 417 (877)
Q Consensus 369 ~~~~~~li~~~~~~g~~~--~----A~~~-~~~m~~~g~--------------------~pd~~~~~~li~~~~~----~ 417 (877)
...|-.+-++|.-.-..+ . ...+ +.+....+. ..+..+|..|+..|.+ .
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHc
Confidence 233322222221100000 0 0000 011111111 1122333333333322 1
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002814 418 ----GRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEA 493 (877)
Q Consensus 418 ----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 493 (877)
.+...|+..+.+.++.. ..+..+||+|.-. ...|.+.-|...|-+-... .+-+..+|..+...+.+..+++.|
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHh
Confidence 12345667777666554 4566777776554 5567777777777665554 234667777777778888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH--H--HCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHH
Q 002814 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEM--T--KEGIRPNVVTYNSIIDAFGRSATTECTVDDVER 569 (877)
Q Consensus 494 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~--~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 569 (877)
...|...+...+ .|...|-...-.....|+.-++..+|..- . ..|-.++..-|.+....-...|+.++-+...++
T Consensus 870 ~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~k 948 (1238)
T KOG1127|consen 870 EPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARK 948 (1238)
T ss_pred hHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhh
Confidence 888888776542 35666665555556677777777777662 2 224455665565555555666766554433222
Q ss_pred HhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHC-CCCCCHHHH
Q 002814 570 DLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKL-KIKPNVVTF 648 (877)
Q Consensus 570 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~-g~~Pd~~t~ 648 (877)
.-....- + ...+.+..+. ..+..+. |.. ....+++.+|.++..+.... ..+-|..+|
T Consensus 949 i~sAs~a---l-~~yf~~~p~~-------~fAy~~~--------gst---lEhL~ey~~a~ela~RliglLe~k~d~sqy 1006 (1238)
T KOG1127|consen 949 ISSASLA---L-SYYFLGHPQL-------CFAYAAN--------GST---LEHLEEYRAALELATRLIGLLELKLDESQY 1006 (1238)
T ss_pred hhhhHHH---H-HHHHhcCcch-------hHHHHHH--------HhH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 1110000 0 0000000000 0000000 000 01122455566555554310 022344444
Q ss_pred H----HHHHHHHcCCCHHHHHHHHHHHH-hcCCcchhHHHHHhhccccchHHHHHHHHHHHhhcCC-Ccc-hhHHHHHHH
Q 002814 649 S----AILNACSRCNSFEDASMLLEELR-LFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDS-STA-SAFYNALTD 721 (877)
Q Consensus 649 ~----~ll~a~~~~g~~~eA~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~-~~~-~~~~~~l~~ 721 (877)
+ -....++..|.++.|...+...- +.+....+..-. .+-.++++++.+.|+++..+-- +.+ ......+++
T Consensus 1007 nvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~---lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~ 1083 (1238)
T KOG1127|consen 1007 NVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLT---LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAV 1083 (1238)
T ss_pred hhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHH---HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHH
Confidence 4 33445566777887776654322 111122222111 1246789999999999876432 222 234455666
Q ss_pred HHHhcCchhhHHHHHHHhhhh
Q 002814 722 MLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 722 ~~~~~g~~~~A~~~~~~~~~~ 742 (877)
.....++.+.|...+.+.+..
T Consensus 1084 ~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1084 CMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred HHhhcccchHHHHHHHHHHHh
Confidence 777788888898887665543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-09 Score=122.04 Aligned_cols=251 Identities=13% Similarity=0.053 Sum_probs=175.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH---------cCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002814 242 GYCQEAISVFNSMKRYNLKPN-LVTYNAVIDACG---------KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR 311 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~---------~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 311 (877)
+.+++|+.+|++..+.. |+ ...|..+..++. ..+ ++++|...++++++.... +...+..+..++..
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~-~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQN-AMIKAKEHAIKATELDHN-NPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccch-HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 45678888888887643 43 444544444332 223 578999999999887543 67778888888889
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002814 312 GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNM 391 (877)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 391 (877)
.|++++|...|+++++.. +.+...+..+...+...|++++|+..+++..+.+.. +...+..++..+...|++++|+..
T Consensus 351 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHH
Confidence 999999999999998875 335778888899999999999999999998886433 333344455567778999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-C
Q 002814 392 FSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC-V 470 (877)
Q Consensus 392 ~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~ 470 (877)
++++.....+-+...+..+..++...|+.++|...+.++.... +.+....+.+...|...| ++|...++.+.+.. .
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 9988765322245557778888889999999999998876542 334555566666777777 47777777766532 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002814 471 SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504 (877)
Q Consensus 471 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 504 (877)
.+....+ +-..|.-.|+-+.+..+ +++.+.+
T Consensus 506 ~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 2222222 33334446666666665 7777654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.9e-09 Score=106.59 Aligned_cols=198 Identities=15% Similarity=0.130 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (877)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 414 (877)
..+..+...|...|++++|++.+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 334444444444444444444444444332 1133444444445555555555555555444432 22334444444555
Q ss_pred HHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002814 415 AKLGRFEEALLVCKEMESSGI-RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEA 493 (877)
Q Consensus 415 ~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 493 (877)
...|++++|...+++..+... ......+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555543211 1123344445555555566666666655555432 22344555555555556666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 494 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
...+++..+.. ..+...+..++..+...|+.++|..+.+.+.
T Consensus 189 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 189 RAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66665555441 2344444455555555666666665555544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.7e-09 Score=106.15 Aligned_cols=200 Identities=15% Similarity=0.078 Sum_probs=167.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (877)
Q Consensus 368 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 447 (877)
....+..+...|...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 45678888999999999999999999998764 4457788889999999999999999999998875 556778888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH
Q 002814 448 GYGKQGKYDEVRRMFEQMKADCV-SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (877)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 526 (877)
.|...|++++|.+.|+++.+... ......+..+...+...|++++|...|++..+... .+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHH
Confidence 99999999999999999987532 22456677788899999999999999999988653 35678889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHh
Q 002814 527 SAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDL 571 (877)
Q Consensus 527 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l 571 (877)
+|...++++.+. ...+...+..+...+...|+.++|....+...
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999876 34456677788888889999998877655443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.2e-09 Score=114.81 Aligned_cols=277 Identities=15% Similarity=0.156 Sum_probs=173.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 002814 250 VFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG 329 (877)
Q Consensus 250 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g 329 (877)
++-.+...|+.||.+||..+|.-||..| +.+.|- +|.-|.-.....+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~g-dieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKG-DIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccC-CCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 4455666777777777888877777777 776666 7777766666666777777777777777766665
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHH
Q 002814 330 IDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKF-LGIGLDRVSYN 408 (877)
Q Consensus 330 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~~~~~ 408 (877)
.|-..+|..|..+|.+.|++.. |+...+ ..-.++..+...|....-..++..+.- -+.-||..+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n-- 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN-- 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH--
Confidence 4667777888888888777665 222222 122234445555555555555554332 233444443
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002814 409 TVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG-KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKG 487 (877)
Q Consensus 409 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 487 (877)
.+......|.++.+++++..+-...- ...... +++-+.... .+++-..+-....+ .|+..+|.+++.+-...
T Consensus 145 -~illlv~eglwaqllkll~~~Pvsa~-~~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 145 -AILLLVLEGLWAQLLKLLAKVPVSAW-NAPFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAA 217 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHhhCCcccc-cchHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhc
Confidence 23333455667777776655432210 011111 133222222 22322222222222 47888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhh
Q 002814 488 GLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECT 563 (877)
Q Consensus 488 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 563 (877)
|+.+.|..++.+|.+.|+..+..-|..|+-+ .+...-+..+++-|.+.|+.|+..|+.-.+-.+...|....+
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG 290 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc
Confidence 8888888888888888888777777777655 777788888888888888888888888777666666654443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-08 Score=109.86 Aligned_cols=295 Identities=18% Similarity=0.214 Sum_probs=186.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 237 (877)
........+...|++++|++.++..... ..+........+..+.+.|+.++|..+|..++++++. |..-|..+..+
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~ 81 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHH
Confidence 3444556678889999999998776555 3556678888899999999999999999999998654 66677777776
Q ss_pred HHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002814 238 YGRSG-----YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDF-KHVVEIFDDMLRNGVQPDRITFNSLLAVCSR 311 (877)
Q Consensus 238 ~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~-~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 311 (877)
..-.. ..+....+|+++...- |...+...+.-.+.... .+ ..+..++..+++.|++ .+|+.|-..|..
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~-~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d 155 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGD-EFKERLDEYLRPQLRKGVP---SLFSNLKPLYKD 155 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHH-HHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcC
Confidence 63332 5677788888887643 44444333332233222 33 3455666777778765 356666667765
Q ss_pred CCCHHHHHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCC-HHHHHH
Q 002814 312 GGLWEAARNLFNEMVHR----G----------IDQDI--FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTYST 374 (877)
Q Consensus 312 ~g~~~~A~~~~~~m~~~----g----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~ 374 (877)
..+.+-..+++..+... + -.|.. .++.-+...|...|++++|++.+++.++.. |+ +..|.+
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~ 233 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMT 233 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHH
Confidence 55555555666555432 1 12233 344555666677777777777777776652 33 556667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHH
Q 002814 375 MIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAV------TY--NALL 446 (877)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~------~~--~~li 446 (877)
..+.|-+.|++++|.+.++.....+ .-|...-+-.+..+.++|++++|.+++....+.+..+-.. .| ....
T Consensus 234 KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a 312 (517)
T PF12569_consen 234 KARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECA 312 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHH
Confidence 7777777777777777777777665 4456666666667777777777777777666554311110 11 2234
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 002814 447 GGYGKQGKYDEVRRMFEQM 465 (877)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m 465 (877)
.+|.+.|++..|++.|..+
T Consensus 313 ~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 313 EAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 4555555555555554444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.5e-07 Score=88.20 Aligned_cols=391 Identities=14% Similarity=0.101 Sum_probs=238.0
Q ss_pred cCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 002814 152 KLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAF 231 (877)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 231 (877)
..+..+.+..+.-...-.|.+.+|..+-..+ +.++-....|...-.+.|+-++...+.+.+.. +..-.
T Consensus 87 ~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~Edq 154 (557)
T KOG3785|consen 87 DDAPAELGVNLACCKFYLGQYIEAKSIAEKA-------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQ 154 (557)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHH
Confidence 3344455555666666677788877765543 33333344556666788888888887777654 23444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 232 SALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA-CGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCS 310 (877)
Q Consensus 232 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 310 (877)
.+|.+.....-.+++|+++|.+....+ |+-...|..+.. |.+.. -++-+.++++-.++. ++-.....|..+....
T Consensus 155 LSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlD-Yydvsqevl~vYL~q-~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 155 LSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLD-YYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLF 230 (557)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcc-hhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHh
Confidence 556665555567999999999998743 666677765555 56666 677888888877765 2223344454443333
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCH
Q 002814 311 RGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG-----AQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRL 385 (877)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 385 (877)
+.=.-..|.+-..++.+.+-.. .-.+.-+++. .+-+.|++++--+.+. -...--.|+-.|.+.+++
T Consensus 231 Rl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dV 301 (557)
T KOG3785|consen 231 RLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDV 301 (557)
T ss_pred hhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccH
Confidence 3222223344444555433111 1123333433 3457788887666553 233444567778999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHH
Q 002814 386 DDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLG-------RFEEALLVCKEMESSGIRKDAV-TYNALLGGYGKQGKYDE 457 (877)
Q Consensus 386 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~ 457 (877)
.+|..+.+++. +.++.-|..-.-.+...| .+.-|.+.|...-+.+..-|.. --.++...+.-..++++
T Consensus 302 qeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFdd 377 (557)
T KOG3785|consen 302 QEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDD 377 (557)
T ss_pred HHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHH
Confidence 99999988764 223333322222233333 3455666666555554443322 23355566666778999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCChHHHHHHHHHHH
Q 002814 458 VRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYS-ALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 458 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
.+..++.+...-...|...+| +.++++..|++.+|.++|-.+....++ |..+|. .|.++|.++++.+-|++++-++-
T Consensus 378 Vl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 378 VLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 999999888765555555555 889999999999999999877655444 555665 55678899999999998876664
Q ss_pred HCCCCCCHHHHH-HHHHHHhhcCChhhhHHHHHHHhhhhhh
Q 002814 537 KEGIRPNVVTYN-SIIDAFGRSATTECTVDDVERDLGKQKE 576 (877)
Q Consensus 537 ~~g~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (877)
. .-+..+.- .+..-|.+.+.+=-|.+.+...-...|.
T Consensus 456 t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 456 T---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred C---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 3 22334333 4445677777665444444333333333
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-09 Score=104.02 Aligned_cols=232 Identities=15% Similarity=0.031 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHH
Q 002814 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGY 379 (877)
Q Consensus 300 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 379 (877)
+.-+.+.++|.+.|.+.+|.+.|+..++. .|-+.||..|-.+|.+..+.+.|+.+|.+-.+. ++-|+....-+.+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 33445556666666666666666665554 244555666666666666666666666665543 222333334455556
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002814 380 AKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVR 459 (877)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 459 (877)
-..++.++|.++|+...+.. ..+......+...|.-.++.+.|+..|+++.+.| .-+...|+.+.-+|.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhH
Confidence 66666666666666666553 3445555555566666666677777777766666 345566666666666666666666
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 460 RMFEQMKADCVSPN--LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 460 ~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
.-|.+.+..--.|+ ...|-.+.......|++..|.+.|+-....+. -....+|.|.-.-.+.|++++|..+++....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 66666655432233 23455555555556666666666666665442 2455666666666666777777776666655
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.5e-06 Score=89.76 Aligned_cols=378 Identities=16% Similarity=0.061 Sum_probs=230.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHH
Q 002814 295 VQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYST 374 (877)
Q Consensus 295 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 374 (877)
+.-|...|..|.-+....|+++.+.+.|++....- .-....|+.+...|.-+|.-..|..++++.......|+..+--.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 44577778888888888899999999998887642 23567788888888888888888888887665543343333222
Q ss_pred H-HHHH-HHcCCHHHHHHHHHHHHHC--C--CCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHCCCCC
Q 002814 375 M-IDGY-AKAGRLDDALNMFSEMKFL--G--IGLDRVSYNTVLSIYAKLG-----------RFEEALLVCKEMESSGIRK 437 (877)
Q Consensus 375 l-i~~~-~~~g~~~~A~~~~~~m~~~--g--~~pd~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~~ 437 (877)
| -..| -+.+..++++++-.+.... + -......|..+.-+|...- ...++++.+++..+.+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 2 2333 3456777777776666552 1 1223445555555554221 2356677777777665 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALID 517 (877)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 517 (877)
|..+...+.--|+..++++.|.+...+.++.+-.-+...|..|.-.+...+++.+|+.+.+...+.- .-|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 3333333444577788889999988888887666688888888888888888888888887765431 111111111122
Q ss_pred HHHHcCChHHHHHHHHHHHHC---------------------C-------CCCCHHHHHHH-------------------
Q 002814 518 ALCKNGLVESAVSLLDEMTKE---------------------G-------IRPNVVTYNSI------------------- 550 (877)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~---------------------g-------~~p~~~~~~~l------------------- 550 (877)
.-..-++.++|+.....+... | ..-...++..+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 222233333333332222210 0 00011122222
Q ss_pred ---------------------HHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHH
Q 002814 551 ---------------------IDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLV 609 (877)
Q Consensus 551 ---------------------i~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (877)
.+.+.+.+..++|...+.++-...+... ..+...
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~------------------------~~~~~~- 690 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSA------------------------SVYYLR- 690 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhH------------------------HHHHHh-
Confidence 2222222222222222222222111110 001100
Q ss_pred HHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcCCCHHHHHH--HHHHHHhcCCcchhHHHHHh
Q 002814 610 AEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVV-TFSAILNACSRCNSFEDASM--LLEELRLFDNQVYGVAHGLL 686 (877)
Q Consensus 610 ~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~--~~~~~~~~~~~~~~~~~~l~ 686 (877)
|+. ...++...||.+.|..... +.||.+ +..++.-++...|+-.-|.+ ++.++.+.||.++.+++.+.
T Consensus 691 ----G~~---~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 691 ----GLL---LEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred ----hHH---HHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 100 2234577889999998887 789655 68889999999998777766 99999999999999999887
Q ss_pred hcc-ccchHHHHHHHHHHHhhcCC
Q 002814 687 MGY-RDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 687 ~~~-~~~~~~~A~~~~~~~~~~~~ 709 (877)
... ..|+.++|.+.|+-+.+++.
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhhcc
Confidence 665 68999999999999999877
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-08 Score=108.55 Aligned_cols=249 Identities=20% Similarity=0.224 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CC
Q 002814 405 VSYNTVLSIYAKLGRFEEALLVCKEMESS-----GI-RKDAV-TYNALLGGYGKQGKYDEVRRMFEQMKAD-----C-VS 471 (877)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~ 471 (877)
.+...|...|...|+++.|..+++..++. |. .+.+. ..+.+...|...+++++|..+|++++.. | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44455666677777777777766665432 10 11211 1223555666666677666666666532 1 11
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHC---CC
Q 002814 472 P-NLLTYSTLIDVYSKGGLYKEAMQIFREFKQA-----GL-KADVV-LYSALIDALCKNGLVESAVSLLDEMTKE---GI 540 (877)
Q Consensus 472 p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~ 540 (877)
| -..+++.|...|.+.|++++|...+++..+. |. .+.+. .++.++..|+..+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 1344555556666666666666555554321 10 11111 2334444555566666666666554431 01
Q ss_pred CCCH----HHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCC
Q 002814 541 RPNV----VTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQG 616 (877)
Q Consensus 541 ~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 616 (877)
.++. .+++.|...|.+.|++++|.+.+++++..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~------------------------------------------- 396 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI------------------------------------------- 396 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-------------------------------------------
Confidence 1111 24555555555555555554443333321
Q ss_pred cchhhhhHhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhccccchHH
Q 002814 617 KKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWV 695 (877)
Q Consensus 617 ~~~~~~~~~~~~A~~~~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 695 (877)
.++... +..+. ...++.|..+|...+..++|.++|++...
T Consensus 397 ----------------~~~~~~-~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~---------------------- 437 (508)
T KOG1840|consen 397 ----------------LRELLG-KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD---------------------- 437 (508)
T ss_pred ----------------HHhccc-CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH----------------------
Confidence 111111 12232 34578889999999999999999987762
Q ss_pred HHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhh
Q 002814 696 QALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGK 740 (877)
Q Consensus 696 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 740 (877)
+. +....+.......|-.|+-+|..+|++++|.++.....
T Consensus 438 ----i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 ----IM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred ----HH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11 11122222345568889999999999999999876543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-06 Score=88.56 Aligned_cols=268 Identities=11% Similarity=0.068 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHH
Q 002814 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD-IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376 (877)
Q Consensus 298 ~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li 376 (877)
|+.....+.+.+...|+.++|+..|+.....+ |+ +.........+.+.|+++....+...+.... .-....|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 33444445555555555555555555544321 11 1111222222334444444444444443321 00112222222
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 002814 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYD 456 (877)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 456 (877)
.......+++.|+.+-++.+... .-+...|..-...+...|+.++|.-.|+...... +-+...|.-|+..|...|++.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 22333444445554444444332 2222333333344444555555555555444332 234445555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHH
Q 002814 457 EVRRMFEQMKADCVSPNLLTYSTLI-DVYS-KGGLYKEAMQIFREFKQAGLKADV-VLYSALIDALCKNGLVESAVSLLD 533 (877)
Q Consensus 457 ~A~~~~~~m~~~g~~p~~~t~~~li-~~~~-~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~ 533 (877)
+|..+-+..... +..+..+...+. ..+. ...--++|.+++++.... .|+. ...+.+...|...|..++++.+++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 554444433322 122333333221 1111 112234444444444332 2222 233334444444555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhh
Q 002814 534 EMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (877)
Q Consensus 534 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~ 575 (877)
.... ..||....+.|.+.+.....+++|++.+..++..+|
T Consensus 463 ~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 463 KHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 4443 234444444455555444445555444444444444
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-06 Score=92.41 Aligned_cols=448 Identities=13% Similarity=0.124 Sum_probs=247.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHH--
Q 002814 198 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV--IDAC-- 273 (877)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--l~~~-- 273 (877)
+=++.+...|++++|.+...+++..+ +.+..++..-+-++.+.+++++|+.+.+.-.. ..+++.. =.+|
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHH
Confidence 34567889999999999999999876 44677888888889999999999966654321 1222222 3444
Q ss_pred HcCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHH
Q 002814 274 GKGGVDFKHVVEIFDDMLRNGVQP-DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQ-DIFTYNTLLDAICKGAQMD 351 (877)
Q Consensus 274 ~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~ 351 (877)
.+.+ ..++|+..++ |..+ |..+...-...+.+.|++++|.++|+.+.+.+... |...-..++.+-.. -
T Consensus 90 Yrln-k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l 159 (652)
T KOG2376|consen 90 YRLN-KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----L 159 (652)
T ss_pred HHcc-cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----h
Confidence 4667 7899998887 3333 33466666678899999999999999998875321 11112222221111 1
Q ss_pred HHHHHHHHchhCCCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHC-------C-CC-CCHH-----HHHHHHHHH
Q 002814 352 LAFEIMAEMPAKNISPNVVTYSTMI---DGYAKAGRLDDALNMFSEMKFL-------G-IG-LDRV-----SYNTVLSIY 414 (877)
Q Consensus 352 ~A~~~~~~m~~~g~~pd~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~-------g-~~-pd~~-----~~~~li~~~ 414 (877)
.+ ++.+..... | ..+|..+. -.+...|++.+|++++...... + .. -+.. .-.-|.-++
T Consensus 160 ~~-~~~q~v~~v---~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 160 QV-QLLQSVPEV---P-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred hH-HHHHhccCC---C-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 11 123333322 2 33454443 3566789999999999987321 1 01 0111 112334456
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHcCCH-H-HHHHHHHHHHHC-----------CCCCCHHHH
Q 002814 415 AKLGRFEEALLVCKEMESSGIRKDAVT----YNALLGGYGKQGKY-D-EVRRMFEQMKAD-----------CVSPNLLTY 477 (877)
Q Consensus 415 ~~~g~~~~A~~~~~~m~~~g~~~~~~~----~~~li~~~~~~g~~-~-~A~~~~~~m~~~-----------g~~p~~~t~ 477 (877)
-..|+-++|..+|...++.. .+|... -|.|+.+ ....++ + .++..++..... .-.-....-
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N 312 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN 312 (652)
T ss_pred HHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999998877 445422 2333222 111111 1 122222222111 000011111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 002814 478 STLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALC-KNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556 (877)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 556 (877)
+.++..| .+.-+.+.++...... ..|....=+.+..++. +.....+|.+++...-+....-..++.-.+++....
T Consensus 313 ~~lL~l~--tnk~~q~r~~~a~lp~--~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 313 NALLALF--TNKMDQVRELSASLPG--MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHH--hhhHHHHHHHHHhCCc--cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 2222322 2233333333332221 1233322223333322 222466777777766654222223455566666677
Q ss_pred cCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHH
Q 002814 557 SATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKM 636 (877)
Q Consensus 557 ~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m 636 (877)
.|+++.|++++...+.. .....
T Consensus 389 ~gn~~~A~~il~~~~~~----------------------------------------------------------~~ss~ 410 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLES----------------------------------------------------------WKSSI 410 (652)
T ss_pred cCCHHHHHHHHHHHhhh----------------------------------------------------------hhhhh
Confidence 77777666543221100 11133
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc------CCcchhHHHHHhhcc--ccchHHHHHHHHHHHhhcC
Q 002814 637 HKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLF------DNQVYGVAHGLLMGY--RDNIWVQALSLFDEVKLMD 708 (877)
Q Consensus 637 ~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~------~~~~~~~~~~l~~~~--~~~~~~~A~~~~~~~~~~~ 708 (877)
.+.+..|..| .++...+.+.++-+.|..+++++... ......++...+.++ +.|.-++|.+.++++++..
T Consensus 411 ~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 411 LEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred hhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 3444556555 45667777777777777777776521 111111111112222 6689999999999999998
Q ss_pred CCcchhHHHHHHHHHHhcCchhhHHHH
Q 002814 709 SSTASAFYNALTDMLWHFGQKRGAQLV 735 (877)
Q Consensus 709 ~~~~~~~~~~l~~~~~~~g~~~~A~~~ 735 (877)
| ++......|+-+|.... .+.|..+
T Consensus 489 ~-~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 489 P-NDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred C-chHHHHHHHHHHHHhcC-HHHHHHH
Confidence 8 77888888888888763 5555544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-08 Score=109.12 Aligned_cols=240 Identities=21% Similarity=0.293 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHH
Q 002814 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHR-----GI-DQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYS 373 (877)
Q Consensus 300 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 373 (877)
.+...|...|...|+++.|..+++..++. |. .+.+.+ ..+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~----------------------------------~l~ 245 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVAS----------------------------------MLN 245 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHH----------------------------------HHH
Confidence 45555777777777777777777776653 10 011111 111
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-----CC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCCH-
Q 002814 374 TMIDGYAKAGRLDDALNMFSEMKFL-----GI--GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS-----GI-RKDA- 439 (877)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~m~~~-----g~--~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~- 439 (877)
.+...|...+++++|..+|+++... |- +--..+++.|..+|.+.|++++|...+++..+. |. .+.+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 2344444445555555554444321 10 001233444444555555555555444443211 10 1111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--C
Q 002814 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADC---VSP----NLLTYSTLIDVYSKGGLYKEAMQIFREFKQA-----G--L 505 (877)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p----~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~ 505 (877)
..++.++..|+..+++++|..++++..+.- +.+ -..+++.|...|.+.|++++|.++|+++++. | .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 223444555666666776666666543310 111 1356788888888888888888888877642 1 1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----CCC-CCCH-HHHHHHHHHHhhcCChhhhHHHHHHHhhh
Q 002814 506 KADVVLYSALIDALCKNGLVESAVSLLDEMTK----EGI-RPNV-VTYNSIIDAFGRSATTECTVDDVERDLGK 573 (877)
Q Consensus 506 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~l~~ 573 (877)
.-....++.|...|.+.+++.+|.++|.+... .|. .|+. .+|..|...|.+.|+++.|.++.+.++..
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 11245677888888889999988888887643 232 2444 48999999999999999999987776643
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-10 Score=84.89 Aligned_cols=50 Identities=44% Similarity=0.796 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 002814 507 ADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556 (877)
Q Consensus 507 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 556 (877)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-07 Score=99.17 Aligned_cols=425 Identities=15% Similarity=0.122 Sum_probs=254.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT-VYAFSALISAYGR 240 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~ 240 (877)
-..+....|+++.|+..|..++... |.+..+|+.-..+|.+.|++++|.+=-.+.++.. |+ ...|+-+..++.-
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~---p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLS---PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFG 82 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccC---CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHh
Confidence 4566778899999999999999886 4467789999999999999999988777777653 44 5688889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC-HHHHH
Q 002814 241 SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL-WEAAR 319 (877)
Q Consensus 241 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~A~ 319 (877)
.|++++|+.-|.+-++.... |...++-+..++.. + ..+.+.| -+...|..+..--..... .+.+.
T Consensus 83 lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~---~-~~~~~~~---------~~p~~~~~l~~~p~t~~~~~~~~~ 148 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLE---D-YAADQLF---------TKPYFHEKLANLPLTNYSLSDPAY 148 (539)
T ss_pred cccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhH---H-HHhhhhc---------cCcHHHHHhhcChhhhhhhccHHH
Confidence 99999999999998874322 45566666666511 1 1121111 122233222211111100 01111
Q ss_pred -HHHHHHHHcCCCCCHHHH---HHHHHHHHHcCCHHHH-HHHH------------HHchhCCCCC-C----------HHH
Q 002814 320 -NLFNEMVHRGIDQDIFTY---NTLLDAICKGAQMDLA-FEIM------------AEMPAKNISP-N----------VVT 371 (877)
Q Consensus 320 -~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A-~~~~------------~~m~~~g~~p-d----------~~~ 371 (877)
.+++.+.+ + +.++..| ..++.+.......+.- ...- ..+....... | ..-
T Consensus 149 ~~~l~~~~~-~-p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ 226 (539)
T KOG0548|consen 149 VKILEIIQK-N-PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHK 226 (539)
T ss_pred HHHHHHhhc-C-cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhH
Confidence 11111111 1 0001000 1111111111110000 0000 0000000000 1 112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA------- 444 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~------- 444 (877)
...+.++..+..+++.|++.+....+.. -+..-++....+|...|.+.+........++.| .-...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHH
Confidence 4457777788889999999999888774 345556667788999999988888887777666 222233332
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002814 445 LLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL 524 (877)
Q Consensus 445 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 524 (877)
+..+|.+.++++.|+..|.+.+.....||.. .+....+++.+..+...-.+... ..-...-...+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 3446777888999999999877654444332 23345556665555554433222 1122223667889999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHH
Q 002814 525 VESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKV 604 (877)
Q Consensus 525 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (877)
+.+|++.|.++++.. +-|...|....-+|.+.|.+.+|+...+.+++++|+.... ++. ...+
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg--y~R-------------Kg~a-- 435 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA--YLR-------------KGAA-- 435 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH--HHH-------------HHHH--
Confidence 999999999999875 3356689999999999999999999999999987654211 110 0001
Q ss_pred HHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 605 FGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNAC 655 (877)
Q Consensus 605 ~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~ 655 (877)
...-+++++|++.|++.++ ..|+..-+.--+.-|
T Consensus 436 ---------------l~~mk~ydkAleay~eale--~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 436 ---------------LRAMKEYDKALEAYQEALE--LDPSNAEAIDGYRRC 469 (539)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHH
Confidence 1111378889999999887 557655443333333
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.1e-07 Score=100.07 Aligned_cols=292 Identities=15% Similarity=0.166 Sum_probs=208.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----
Q 002814 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG---- 274 (877)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~---- 274 (877)
...++...|++++|++.++...+. +.............+.+.|+.++|..+|..+.+.+ |+...|...+..+.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 355678899999999999887654 33356777888899999999999999999999865 66666555554444
Q ss_pred c--CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 002814 275 K--GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW-EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMD 351 (877)
Q Consensus 275 ~--~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 351 (877)
. .. +.+...++|+++...- |.......+.-.+.....+ ..+..++..++.+|++ .+++.|-..|....+.+
T Consensus 87 ~~~~~-~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDE-DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccc-cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 1 12 4677888999887653 3333332222222221222 3455666777788865 45677777777666655
Q ss_pred HHHHHHHHchhC----C----------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 002814 352 LAFEIMAEMPAK----N----------ISPNV--VTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD-RVSYNTVLSIY 414 (877)
Q Consensus 352 ~A~~~~~~m~~~----g----------~~pd~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~ 414 (877)
-..+++...... + -.|.. .++..+...|-..|++++|++++++.++. .|+ ...|..-...+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Karil 238 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 555666554322 1 12344 34466677888999999999999999987 454 67788888999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHh
Q 002814 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLL--------TYSTLIDVYSK 486 (877)
Q Consensus 415 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------t~~~li~~~~~ 486 (877)
-..|++.+|.+.++.....+ .-|...-+-.+..+.++|++++|.+++......+..|-.. .......+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887 5677888888889999999999999999887765432211 12455678889
Q ss_pred cCCHHHHHHHHHHHHH
Q 002814 487 GGLYKEAMQIFREFKQ 502 (877)
Q Consensus 487 ~g~~~~A~~~~~~m~~ 502 (877)
.|++..|++.|..+.+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 9999998887766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-10 Score=84.36 Aligned_cols=47 Identities=47% Similarity=0.808 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (877)
Q Consensus 368 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 414 (877)
|+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-07 Score=99.62 Aligned_cols=222 Identities=15% Similarity=0.119 Sum_probs=135.3
Q ss_pred ccCCHHHHHHHHHHHHHccccC-CChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 002814 168 NRGEWSKAIQCFAFAVKREERK-NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQE 246 (877)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 246 (877)
..++.+.++..+..++...... ......+..+...+.+.|+.++|...|+++++..+. +..+|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 3455667777777777543221 223456777777788888888888888888876543 67788888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002814 247 AISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMV 326 (877)
Q Consensus 247 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~ 326 (877)
|+..|++..+.... +..+|..+..++...| ++++|++.|++.++.. |+..........+...++.++|...|++..
T Consensus 117 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g-~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 117 AYEAFDSVLELDPT-YNYAYLNRGIALYYGG-RYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 88888888774322 4566777777777778 8888888888887753 333222222223445667888888886655
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh---CCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002814 327 HRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA---KNIS---PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLG 399 (877)
Q Consensus 327 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~---pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 399 (877)
... .++...+ .+ .....|+..++ +.++.+.+ ..+. .....|..+...|.+.|++++|+..|++..+..
T Consensus 193 ~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 432 2222221 22 22234444333 23333321 1110 122456667777777777777777777766653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-06 Score=86.64 Aligned_cols=328 Identities=15% Similarity=0.122 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 002814 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTM---IDGYAKAGRLDDALNMFSEMKFLGIGLDRVSY-NTV 410 (877)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~-~~l 410 (877)
.-..-+...+...|++.+|+.-|...++. |...|.++ ...|...|+-.-|+.-|...++. +||-..- .--
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 33344445555555555555555555543 33333332 23455555555555555555544 4443221 111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002814 411 LSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLY 490 (877)
Q Consensus 411 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 490 (877)
...+.+.|.+++|..=|+.+++.. |+.. ....++.+.--.++-.. ....+..+.-.|+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~---~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNG---LVLEAQSKLALIQEHWV----------------LVQQLKSASGSGDC 171 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcc---hhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCch
Confidence 233445555555555555555442 1110 11111211111111111 12233445668899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHH
Q 002814 491 KEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERD 570 (877)
Q Consensus 491 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 570 (877)
..|++....+++.. +.|...|..-..+|...|++..|+.-++...+.. ..+..++..+-..+...|+.+.++..+.+.
T Consensus 172 ~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred hhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999998865 5688899999999999999999998888776642 335567777888889999999999999999
Q ss_pred hhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCC--HHHH
Q 002814 571 LGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN--VVTF 648 (877)
Q Consensus 571 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd--~~t~ 648 (877)
|+++|+.. .|. ..+..+-++...+..... ....+++-++++..++.++. .|. .+.|
T Consensus 250 LKldpdHK----~Cf----------~~YKklkKv~K~les~e~------~ie~~~~t~cle~ge~vlk~--ep~~~~ir~ 307 (504)
T KOG0624|consen 250 LKLDPDHK----LCF----------PFYKKLKKVVKSLESAEQ------AIEEKHWTECLEAGEKVLKN--EPEETMIRY 307 (504)
T ss_pred HccCcchh----hHH----------HHHHHHHHHHHHHHHHHH------HHhhhhHHHHHHHHHHHHhc--CCcccceee
Confidence 99988753 111 122222222222111100 11123666777777777663 343 2333
Q ss_pred H---HHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchh
Q 002814 649 S---AILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASA 714 (877)
Q Consensus 649 ~---~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~ 714 (877)
+ .+-.++...|++-||++...+++..+|.+..++..-..++ ....++.|+.-|+++.+.++ .|..
T Consensus 308 ~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~-sn~~ 376 (504)
T KOG0624|consen 308 NGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE-SNTR 376 (504)
T ss_pred eeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc-ccHH
Confidence 3 3334556678888888888888888888777766554444 45678888888888888877 4433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.1e-07 Score=87.71 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhcCchhhHHHHHHHhhhhhchhhhh
Q 002814 714 AFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVW 749 (877)
Q Consensus 714 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 749 (877)
++.-+.+|+||+..++..+.++|....+-.-..++|
T Consensus 415 PVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~W 450 (459)
T KOG4340|consen 415 PVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVW 450 (459)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHhhhccccee
Confidence 457788999999999999999998876654444444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7e-06 Score=81.62 Aligned_cols=205 Identities=13% Similarity=0.151 Sum_probs=124.1
Q ss_pred HHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002814 345 CKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEAL 424 (877)
Q Consensus 345 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~ 424 (877)
.-.|+...|++....+.+..+. |...|..-..+|...|....|+.-++...+.. .-+..++.-+-..+...|+.+.++
T Consensus 166 ~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred hcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHH
Confidence 3445555556555555554332 55556666666667777776666666555443 334555555566666777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002814 425 LVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504 (877)
Q Consensus 425 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 504 (877)
...++.++. .||...+... |- .+.+..+.++.|.+. ...+++.++++-.+...+..
T Consensus 244 ~~iRECLKl--dpdHK~Cf~~---YK---klkKv~K~les~e~~----------------ie~~~~t~cle~ge~vlk~e 299 (504)
T KOG0624|consen 244 KEIRECLKL--DPDHKLCFPF---YK---KLKKVVKSLESAEQA----------------IEEKHWTECLEAGEKVLKNE 299 (504)
T ss_pred HHHHHHHcc--CcchhhHHHH---HH---HHHHHHHHHHHHHHH----------------HhhhhHHHHHHHHHHHHhcC
Confidence 777776654 3554433221 11 223333333333322 34556666666666666654
Q ss_pred CCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 505 LKADVVL---YSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 505 ~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
..-..+. +..+-.++...|++.+|+....+.++ +.|+ ..++.--..+|.-...++.|++.++.+.+.++++
T Consensus 300 p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 300 PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred CcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 3222223 33445566677888899888888887 4565 5588888888888888888988888888876654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.1e-07 Score=94.77 Aligned_cols=397 Identities=13% Similarity=0.108 Sum_probs=225.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCC-HHHHHHHHHHHHHcCC
Q 002814 306 LAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTYSTMIDGYAKAGR 384 (877)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~ 384 (877)
.++.+..|+++.|...|.+.+.... +|.+.|..-..+|++.|++++|++=-.+-.+. .|+ ...|+-+..++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 3566788999999999999998754 48899999999999999999998877666654 455 4678888999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH---HHHHHHHHHCC---CCCCHHHHHHHHHHHHHc------
Q 002814 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEA---LLVCKEMESSG---IRKDAVTYNALLGGYGKQ------ 452 (877)
Q Consensus 385 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~g---~~~~~~~~~~li~~~~~~------ 452 (877)
+++|+.-|.+-.+.. +-|...++-+.+++.......+. -.++..+...- .......|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999999988774 55677888888877211111000 00111110000 000011122222222110
Q ss_pred ----CCHHHHHHHHHH-----HHHCC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHHH
Q 002814 453 ----GKYDEVRRMFEQ-----MKADC-------VSP------------N----------LLTYSTLIDVYSKGGLYKEAM 494 (877)
Q Consensus 453 ----g~~~~A~~~~~~-----m~~~g-------~~p------------~----------~~t~~~li~~~~~~g~~~~A~ 494 (877)
.++..|.-.+.. +...+ ..| | ..-...+..+..+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 111111111110 00000 111 0 111345566666777888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-------HHhhcCChhhhHHHH
Q 002814 495 QIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID-------AFGRSATTECTVDDV 567 (877)
Q Consensus 495 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-------~~~~~g~~~~a~~~~ 567 (877)
+-+....+.. -+..-++....+|...|.+.+........++.|.. ...-|+.+.. +|.+.++++.++..+
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 8888887754 35555666677888888888888777777766532 2223333333 455566777778777
Q ss_pred HHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHH---HHHhcC---CcchhhhhHhHHHHHHHHHHHHHCCC
Q 002814 568 ERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLV---AEKAGQ---GKKENRCRQEILCILGVFQKMHKLKI 641 (877)
Q Consensus 568 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~---~~~~~~~~~~~~~A~~~~~~m~~~g~ 641 (877)
.+++........+ ..+ .............. -+.+.. ...+....+++.+|+..|.+++..
T Consensus 322 ~kaLte~Rt~~~l-s~l-----------k~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr-- 387 (539)
T KOG0548|consen 322 QKALTEHRTPDLL-SKL-----------KEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR-- 387 (539)
T ss_pred HHHhhhhcCHHHH-HHH-----------HHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--
Confidence 7776654331100 000 01111111111000 000000 000012235677777777777763
Q ss_pred CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHH
Q 002814 642 KP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNAL 719 (877)
Q Consensus 642 ~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 719 (877)
.| |...|+.-.-+|.+.|.+.+|.+-.+..++++|+.......=...+ ...+|++|.+.|++.++.+| .+..+.+.+
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp-~~~e~~~~~ 466 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP-SNAEAIDGY 466 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-hhHHHHHHH
Confidence 35 4555777777777777777777777777777765443322111111 34567777777777777777 556655555
Q ss_pred HHHHH
Q 002814 720 TDMLW 724 (877)
Q Consensus 720 ~~~~~ 724 (877)
..++.
T Consensus 467 ~rc~~ 471 (539)
T KOG0548|consen 467 RRCVE 471 (539)
T ss_pred HHHHH
Confidence 55544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.5e-06 Score=89.56 Aligned_cols=57 Identities=12% Similarity=0.001 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhc----CCcchhHHHHHhh-cc-ccchHHHHHHHHHHHhhcCCCcchhHH
Q 002814 660 SFEDASMLLEELRLF----DNQVYGVAHGLLM-GY-RDNIWVQALSLFDEVKLMDSSTASAFY 716 (877)
Q Consensus 660 ~~~eA~~~~~~~~~~----~~~~~~~~~~l~~-~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~ 716 (877)
+..+.++-...|.+. ++...+-+..++. .+ +..+|+.|-+.+.++.+..|..+..+|
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~~s~~ 1368 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVDLSTF 1368 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccchhcc
Confidence 455555555555432 1222232333322 22 567888888888888888776555544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-07 Score=98.32 Aligned_cols=204 Identities=16% Similarity=0.030 Sum_probs=147.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
..|..+...+.+.|++++|+..|..+++.. |.+..++..+...+...|++++|...|+++++..+. +..+|..+..
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~ 140 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR---PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 446667788899999999999999999986 556789999999999999999999999999987543 5788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002814 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 316 (877)
++...|++++|++.|++..+.. |+..........+...+ +.++|...|++.... ..++... ..+.. ...|+..
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~-~~~~A~~~l~~~~~~-~~~~~~~-~~~~~--~~lg~~~ 213 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKL-DPKQAKENLKQRYEK-LDKEQWG-WNIVE--FYLGKIS 213 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccC-CHHHHHHHHHHHHhh-CCccccH-HHHHH--HHccCCC
Confidence 9999999999999999998754 44322222222233455 899999999776643 2333222 22332 2345554
Q ss_pred HHHHHHHHHHHc---CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHH
Q 002814 317 AARNLFNEMVHR---GI---DQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYS 373 (877)
Q Consensus 317 ~A~~~~~~m~~~---g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 373 (877)
.+ +.++.+.+. .. +.....|..+...+.+.|++++|+..|++....++. |-+-+.
T Consensus 214 ~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~-~~~e~~ 274 (296)
T PRK11189 214 EE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY-NFVEHR 274 (296)
T ss_pred HH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-hHHHHH
Confidence 43 344444432 11 113467999999999999999999999999987533 444433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-06 Score=92.52 Aligned_cols=194 Identities=13% Similarity=0.024 Sum_probs=85.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYG-- 239 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~-- 239 (877)
+...+...|+.+.+.+.+....+......+...........+...|++++|.++++++.+..+. +..++.. ...+.
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~~~~~~ 89 (355)
T cd05804 12 AALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HLGAFGL 89 (355)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hHHHHHh
Confidence 3333444455555555555544433221121122222233445556666666666666554322 3333331 11111
Q ss_pred --hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002814 240 --RSGYCQEAISVFNSMKRYNLKPN-LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (877)
Q Consensus 240 --~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 316 (877)
..+..+.+.+.++.. ....|+ ......+...+...| ++++|.+.+++.++.... +...+..+..++...|+++
T Consensus 90 ~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G-~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 90 GDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAG-QYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred cccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHH
Confidence 123333333333331 111222 222233334455555 566666666665554321 3344555555555566666
Q ss_pred HHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002814 317 AARNLFNEMVHRGI-DQDI--FTYNTLLDAICKGAQMDLAFEIMAEMP 361 (877)
Q Consensus 317 ~A~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (877)
+|...+++..+... .++. ..|..+...+...|++++|+++|++..
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 66666555554321 1111 223345555555555555555555543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-06 Score=95.49 Aligned_cols=415 Identities=13% Similarity=0.038 Sum_probs=253.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMA 358 (877)
Q Consensus 279 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (877)
+...++..|-+.++.... -...|..|...|+..-+...|.+.|++..+.+ ..|...+....+.|++..++++|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 467777777777765322 23568889999988888999999999998864 2367788899999999999999998844
Q ss_pred HchhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002814 359 EMPAKNIS-PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK 437 (877)
Q Consensus 359 ~m~~~g~~-pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 437 (877)
..-+.... .-...|-...-.|.+.++..+|+..|+...... +-|...|..++.+|...|++..|+++|.+..... +.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cH
Confidence 33332100 011223334455778889999999999888765 5577889999999999999999999998887653 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CC
Q 002814 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADC------VSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ-------AG 504 (877)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-------~g 504 (877)
+...-....-+.+..|.+.+|...+....... ..--..++..+...+.-.|-..+|..++++-++ ..
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 22222233345677899999998888765431 111233444444444445555555555555443 11
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCh---h---hhHHHHHHHhhhhhhhh
Q 002814 505 LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATT---E---CTVDDVERDLGKQKESA 578 (877)
Q Consensus 505 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~---~a~~~~~~~l~~~~~~~ 578 (877)
..-+...|..+. .|..+|-... .. .|+......+..-+-..+.. | .|.+.+...+.....
T Consensus 709 ~~~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~-- 774 (1238)
T KOG1127|consen 709 LQSDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH-- 774 (1238)
T ss_pred hhhhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc--
Confidence 112222332222 2333333332 11 22222222222212222222 1 011111111111000
Q ss_pred hhhhhhccCchhhhhhccch-hHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 002814 579 NLDAMCSQDDKDVQEAGRTD-NQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSR 657 (877)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~ 657 (877)
...| |-.++.+..... .+... .+...|+..+++.++.. .-+..+|++|+-+ +.
T Consensus 775 ----------------~~~WyNLGinylr~f~~--l~et~------~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg 828 (1238)
T KOG1127|consen 775 ----------------MYPWYNLGINYLRYFLL--LGETM------KDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SG 828 (1238)
T ss_pred ----------------cchHHHHhHHHHHHHHH--cCCcc------hhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hc
Confidence 1122 222333322111 11111 13457888998887632 2366778777655 88
Q ss_pred CCCHHHHHHHHHHHHhcCCcchhHHHHHhhc-cccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHH
Q 002814 658 CNSFEDASMLLEELRLFDNQVYGVAHGLLMG-YRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVV 736 (877)
Q Consensus 658 ~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 736 (877)
.|++.-|...|-+.+..+|...+++.|+.+. ....+.+.|...|.++..++| .|..-|-..+-+....|+.-++..+|
T Consensus 829 ~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lf 907 (1238)
T KOG1127|consen 829 IGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILF 907 (1238)
T ss_pred cchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8999999999999999999998888888544 478899999999999999999 67777766666666778777777666
Q ss_pred HH
Q 002814 737 LE 738 (877)
Q Consensus 737 ~~ 738 (877)
..
T Consensus 908 aH 909 (1238)
T KOG1127|consen 908 AH 909 (1238)
T ss_pred Hh
Confidence 44
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-05 Score=81.54 Aligned_cols=421 Identities=11% Similarity=0.121 Sum_probs=266.4
Q ss_pred HHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 002814 146 LKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG 225 (877)
Q Consensus 146 l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 225 (877)
-+.++.++.+.+.|..||+.+..+ -.+++++.++.+...- |..+.+|..-|....+.++++..+.+|.+.+..-
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F---P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-- 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF---PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-- 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC---CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--
Confidence 345666788889999999988766 9999999999998874 4556789999999999999999999999987653
Q ss_pred CCHHHHHHHHHHHHh-cCCHHH----HHHHHHHH-HhCCCCCC-HHHHHHHHHHH---------HcCCCCHHHHHHHHHH
Q 002814 226 NTVYAFSALISAYGR-SGYCQE----AISVFNSM-KRYNLKPN-LVTYNAVIDAC---------GKGGVDFKHVVEIFDD 289 (877)
Q Consensus 226 ~~~~~~~~li~~~~~-~g~~~~----A~~~~~~m-~~~g~~p~-~~~~~~ll~~~---------~~~g~~~~~a~~~~~~ 289 (877)
.+...|..-+..-.+ .|+... -.+.|+-. .+.|+.+- -..|+..+.-+ ..+. +.+...++|++
T Consensus 84 LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~Q-RI~~vRriYqr 162 (656)
T KOG1914|consen 84 LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQ-RITAVRRIYQR 162 (656)
T ss_pred hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHH-HHHHHHHHHHH
Confidence 467788887764433 233332 22333333 34454442 23455555433 2233 56778888988
Q ss_pred HHHCCCCC------CHHHHHHHHHHH-------HhCCCHHHHHHHHHHHHH--cCCCCCHHH---------------HHH
Q 002814 290 MLRNGVQP------DRITFNSLLAVC-------SRGGLWEAARNLFNEMVH--RGIDQDIFT---------------YNT 339 (877)
Q Consensus 290 m~~~g~~p------~~~t~~~ll~~~-------~~~g~~~~A~~~~~~m~~--~g~~~~~~~---------------~~~ 339 (877)
++..-+.- |-..|..=|+.. -+...+..|+++++++.. +|+..+..+ |-.
T Consensus 163 al~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n 242 (656)
T KOG1914|consen 163 ALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKN 242 (656)
T ss_pred HhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHH
Confidence 88642220 112222222211 123456778888877753 243222222 433
Q ss_pred HHHHHHHcCC------HHH--HHHHHHH-chhCCCCCCHHHHH-----HHHHHHHHcCC-------HHHHHHHHHHHHHC
Q 002814 340 LLDAICKGAQ------MDL--AFEIMAE-MPAKNISPNVVTYS-----TMIDGYAKAGR-------LDDALNMFSEMKFL 398 (877)
Q Consensus 340 li~~~~~~g~------~~~--A~~~~~~-m~~~g~~pd~~~~~-----~li~~~~~~g~-------~~~A~~~~~~m~~~ 398 (877)
+|.---..+- .-. ..-++++ |...+..|++.-.- ..-+.+...|+ .+++..+++..++.
T Consensus 243 ~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~ 322 (656)
T KOG1914|consen 243 WIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG 322 (656)
T ss_pred HHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 4432221111 000 0011111 11223333332111 11122333343 45666667665544
Q ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CH
Q 002814 399 GIGLDRVSYNTVLSIYAKLG---RFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP-NL 474 (877)
Q Consensus 399 g~~pd~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 474 (877)
-..-+..+|..+.+.--..- ..+....+++++...-...-..+|..+++.--+..-++.|+.+|.++.+.+..+ ++
T Consensus 323 l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV 402 (656)
T KOG1914|consen 323 LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV 402 (656)
T ss_pred HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence 33334455555443222222 255666677776654333345678888888888889999999999999988766 78
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 002814 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV--VTYNSIID 552 (877)
Q Consensus 475 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~ 552 (877)
..+++++.-|| .++.+-|.++|+--.+.- .-+..--...++-+...++-..|..+|++....++.|+. .+|..+|+
T Consensus 403 fVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 403 FVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred hHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 89999999887 678899999998765542 234455577888899999999999999999988777665 59999999
Q ss_pred HHhhcCChhhhHHHHHHHhhhhh
Q 002814 553 AFGRSATTECTVDDVERDLGKQK 575 (877)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~ 575 (877)
--..-|+++.++++.++....++
T Consensus 481 yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 481 YESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHhcccHHHHHHHHHHHHHhcc
Confidence 99999999988888777665554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6e-07 Score=84.76 Aligned_cols=202 Identities=16% Similarity=0.019 Sum_probs=139.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK 451 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 451 (877)
...|.-+|...|++..|.+-+++.++.. +-+..++..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4445667777777777777777777664 4445667777777777788888888887777665 5566777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 002814 452 QGKYDEVRRMFEQMKADCVS-PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVS 530 (877)
Q Consensus 452 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 530 (877)
.|++++|...|++....-.- --..+|..+..+..+.|+.+.|.+.|++.++.... ...+...+.....+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 88888888888777764211 12456777777777778888888888877776432 44556667777777788888887
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 531 LLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 531 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
.++.....+. ++....-..|..-.+.|+.+.+.+.-.+....+|..
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 7777766544 677777777777777777776665555555555544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.3e-07 Score=83.53 Aligned_cols=193 Identities=13% Similarity=0.026 Sum_probs=85.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 002814 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGV 278 (877)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 278 (877)
|.-.|...|++..|++-++++++..+. +..+|..+...|.+.|..+.|.+.|++....... +-.+.|....-+|..|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg- 117 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG- 117 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC-
Confidence 333444444444444444444444322 3344444444444444444444444444442221 3334444444444444
Q ss_pred CHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 279 DFKHVVEIFDDMLRNGV-QPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIM 357 (877)
Q Consensus 279 ~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 357 (877)
.+++|.+.|++.+..-. .--..||..+.-+..+.|+.+.|...|++.++.... ...+...+.....+.|++-.|...+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHH
Confidence 44444444444443210 111234444444444455555555555554443211 2333444444444455555555555
Q ss_pred HHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 358 AEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (877)
Q Consensus 358 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (877)
+.....+. ++..+.-..|..-...|+-+.+-+.=.++.
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44444433 344444444444444555444444433333
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.9e-06 Score=90.84 Aligned_cols=203 Identities=12% Similarity=0.038 Sum_probs=128.2
Q ss_pred CChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 002814 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGY-GNTV-YAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYN 267 (877)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 267 (877)
|+....+..+...+...|+.+.+.+.+........ ..+. .........+...|++++|.+++++..+.... |...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHH
Confidence 34455666677777777888887777776654322 1222 22233344566788999999999988775322 344444
Q ss_pred HHHHHHH----cCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 268 AVIDACG----KGGVDFKHVVEIFDDMLRNGVQPD-RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLD 342 (877)
Q Consensus 268 ~ll~~~~----~~g~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 342 (877)
. ...+. ..+ ....+.+.++. .....|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 82 ~-~~~~~~~~~~~~-~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~ 156 (355)
T cd05804 82 L-HLGAFGLGDFSG-MRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAH 156 (355)
T ss_pred H-hHHHHHhccccc-CchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 2 11222 223 34445554443 1122333 3344456677788889999999998888864 335677788888
Q ss_pred HHHHcCCHHHHHHHHHHchhCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 343 AICKGAQMDLAFEIMAEMPAKNI-SPNV--VTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (877)
Q Consensus 343 ~~~~~g~~~~A~~~~~~m~~~g~-~pd~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (877)
.|...|++++|++.+++...... .++. ..|..+...+...|++++|+.+|++....
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 88888999999888888776422 1222 34556777888888888888888887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=0.00028 Score=79.47 Aligned_cols=224 Identities=17% Similarity=0.165 Sum_probs=153.5
Q ss_pred HHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 002814 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMIS--ILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGY 243 (877)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 243 (877)
....+++..|+.-....++.. |.. .|..++. .+.+.|+.++|..+++.....+.. |..+...+...|.+.|+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~---Pn~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH---PNA--LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC---CCc--HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhh
Confidence 345678899999998888874 222 2333333 357889999999888877666554 78899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC----------
Q 002814 244 CQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGG---------- 313 (877)
Q Consensus 244 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---------- 313 (877)
.++|..+|++.... .|+..-...+..+|.+.+ ++.+-.+.--+|-+. ++-+.+.|-++++.+...-
T Consensus 93 ~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~-~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 93 LDEAVHLYERANQK--YPSEELLYHLFMAYVREK-SYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred hhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccch
Confidence 99999999998863 577777777788888877 676555554444443 3335566666666554321
Q ss_pred CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002814 314 LWEAARNLFNEMVHRG-IDQDIFTYNTLLDAICKGAQMDLAFEIMA-EMPAKNISPNVVTYSTMIDGYAKAGRLDDALNM 391 (877)
Q Consensus 314 ~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 391 (877)
-..-|.+.++.+.+.+ -.-+..-.......+-..|++++|.+++. ...+.-..-+...-+--++.+...+++.+..++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 1345667777777654 21122222333445567788999999984 333333333555556778888899999999999
Q ss_pred HHHHHHCC
Q 002814 392 FSEMKFLG 399 (877)
Q Consensus 392 ~~~m~~~g 399 (877)
-.++...|
T Consensus 249 ~~~Ll~k~ 256 (932)
T KOG2053|consen 249 SSRLLEKG 256 (932)
T ss_pred HHHHHHhC
Confidence 99988885
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-05 Score=84.61 Aligned_cols=137 Identities=18% Similarity=0.372 Sum_probs=85.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002814 411 LSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLY 490 (877)
Q Consensus 411 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 490 (877)
+.+-.....+.+|+.+++.+.... .-..-|-.+.+.|+..|+++.|.++|.+. ..++--|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 344455667777777777666543 22334556667777777777777777653 1244567777777888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHH
Q 002814 491 KEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVER 569 (877)
Q Consensus 491 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 569 (877)
++|.++-.+.. |.......|.+-..-+-+.|++.+|.++|-... .|+. -|..|-+.|..+..++++++
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 77777765543 334455566666666677777777777664432 2443 35667777776666655443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=0.00012 Score=82.56 Aligned_cols=325 Identities=14% Similarity=0.159 Sum_probs=167.6
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 002814 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFS 232 (877)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 232 (877)
..+|+..+..++++-..+-..+-++++++++-.+...+++..+-+.|+-.-.+..+ ....+..+++-+-+. |
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~-trVm~YI~rLdnyDa-~------ 1052 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADR-TRVMEYINRLDNYDA-P------ 1052 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcCh-HHHHHHHHHhccCCc-h------
Confidence 33456666666666666666666666666665544444444444444433333322 222223333222110 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 002814 233 ALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG 312 (877)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 312 (877)
.+......++-+++|..+|++.. -+..+.+.||.-. + +++.|.++-++.. ....|..+..+-.+.
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~i---~-~ldRA~efAe~~n------~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIENI---G-SLDRAYEFAERCN------EPAVWSQLAKAQLQG 1117 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHHh---h-hHHHHHHHHHhhC------ChHHHHHHHHHHHhc
Confidence 12333445555666666666543 2455555555433 2 4555555444321 345566666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 313 GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMF 392 (877)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 392 (877)
|.+.+|++-|-+. .|...|...++...+.|.+++-.+.+....++.-.|.+. +.||-+|++.+++.+-.+++
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 6666666554222 245566666666666666666666665555544333332 35666666666665544443
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002814 393 SEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP 472 (877)
Q Consensus 393 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 472 (877)
. .||......+.+-|...|.++.|.-+|..+ .-|..|...+...|++..|...-++.-
T Consensus 1190 ~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn------ 1247 (1666)
T KOG0985|consen 1190 A-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN------ 1247 (1666)
T ss_pred c-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc------
Confidence 2 456666666666666666666666555332 334455555555666665555444321
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002814 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEM 535 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 535 (877)
+..||-.+-.+|...+.+.-|. |--.++.....-..-|+.-|-..|-++|-+.+++..
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 4556666555555554443332 111122223334445566666666666666655544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.2e-05 Score=83.90 Aligned_cols=298 Identities=16% Similarity=0.237 Sum_probs=169.5
Q ss_pred HHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 002814 213 KNIFETALNEGYG--NTVYAFSALISAYGRSGYCQEAISVFNSMKRYN--LKPNLVTYNAVIDACGKGGVDFKHVVEIFD 288 (877)
Q Consensus 213 ~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~ 288 (877)
+++.++.+..+.+ .|+..-+..+.++...+-..+-++++++..-.. +.-+...-|.||-...+. +...+.++.+
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika--d~trVm~YI~ 1044 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA--DRTRVMEYIN 1044 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc--ChHHHHHHHH
Confidence 3455555443322 345566667788888888888888888876421 111233344455444454 3566677776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCC
Q 002814 289 DMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN 368 (877)
Q Consensus 289 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 368 (877)
++-.... | .+...+...+-+++|..+|++... +....+.|+. .-+..|.|.+.-++.. .
T Consensus 1045 rLdnyDa-~------~ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n------~ 1103 (1666)
T KOG0985|consen 1045 RLDNYDA-P------DIAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN------E 1103 (1666)
T ss_pred HhccCCc-h------hHHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC------C
Confidence 6644321 1 223445555667777777765432 3444444444 2355566666555543 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 369 VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGG 448 (877)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 448 (877)
...|+.+..+-.+.|...+|++-|-+ .-|...|.-+++...+.|.+++-.+.+....+..-.|.+. ..||-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 45577777777777777777666543 2355667777777777777777766666555554344333 356667
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Q 002814 449 YGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESA 528 (877)
Q Consensus 449 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 528 (877)
|++.+++.+..+++ .-||..-...+.+-|...|.++.|.-+|. ++.-|..|...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHH
Confidence 77777666554443 23555556666666666666666665553 334455666666666666665
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhh
Q 002814 529 VSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECT 563 (877)
Q Consensus 529 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 563 (877)
...-++. -+..||..+-.+|...+.+..|
T Consensus 1240 VD~aRKA------ns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1240 VDAARKA------NSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred HHHhhhc------cchhHHHHHHHHHhchhhhhHH
Confidence 5443332 1334666666666555554443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.2e-06 Score=100.61 Aligned_cols=378 Identities=11% Similarity=-0.023 Sum_probs=233.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 002814 195 LASAMISILGRLGKVDLAKNIFETALNEGYGNT-VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC 273 (877)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 273 (877)
++......+...|++.+|...+..+.. ... ..........+...|+++.+..+++.+.......+..........+
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 444455556667777766654433311 100 1111222334556788888888877663211111221222333344
Q ss_pred HcCCCCHHHHHHHHHHHHHCCC------CCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHH
Q 002814 274 GKGGVDFKHVVEIFDDMLRNGV------QPDR--ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD----IFTYNTLL 341 (877)
Q Consensus 274 ~~~g~~~~~a~~~~~~m~~~g~------~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li 341 (877)
...| +++++..++......-- .+.. .....+...+...|++++|...+++..+.-...+ ....+.+.
T Consensus 420 ~~~g-~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 420 QSQH-RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HHCC-CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 5667 89999999988764310 1111 1222333456789999999999999876421112 23456677
Q ss_pred HHHHHcCCHHHHHHHHHHchhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHH
Q 002814 342 DAICKGAQMDLAFEIMAEMPAK----NI-SPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL----GIG--L-DRVSYNT 409 (877)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~m~~~----g~-~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-d~~~~~~ 409 (877)
..+...|++++|...+++.... |. .....++..+...+...|++++|...+++.... +.. + ....+..
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 7788899999999999887642 11 111234566677888999999999998876542 211 1 2334555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHH-----HH
Q 002814 410 VLSIYAKLGRFEEALLVCKEMESSG--IRK--DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS-PNLLTY-----ST 479 (877)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~m~~~g--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ 479 (877)
+...+...|++++|...+++..... ..+ ....+..+...+...|+.++|.+.+.+....... .....+ ..
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 6667778899999999998875431 112 2334455667788999999999999887542111 011111 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHH
Q 002814 480 LIDVYSKGGLYKEAMQIFREFKQAGLKAD---VVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPNV-VTYNSII 551 (877)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li 551 (877)
.+..+...|+.+.|...+........... ...+..+..++...|+.++|...+++.... |...+. .+...+.
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 22445568999999999877554221111 112456677888999999999999988753 333322 3566777
Q ss_pred HHHhhcCChhhhHHHHHHHhhhhhh
Q 002814 552 DAFGRSATTECTVDDVERDLGKQKE 576 (877)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (877)
.++.+.|+.++|...+.++++....
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 7889999999999999999987643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-05 Score=99.68 Aligned_cols=339 Identities=12% Similarity=0.006 Sum_probs=217.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CCCHH--HHHHHH
Q 002814 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNL------KPNLV--TYNAVI 270 (877)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~~--~~~~ll 270 (877)
....+...|+++.+...++.+.......+..........+...|++++|..++......-- .+... ....+.
T Consensus 380 ~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 380 HGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred hHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 3344556677777777776652111111222334455566788999999999988754210 11111 122223
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHH
Q 002814 271 DACGKGGVDFKHVVEIFDDMLRNGVQPDR----ITFNSLLAVCSRGGLWEAARNLFNEMVHR----GI-DQDIFTYNTLL 341 (877)
Q Consensus 271 ~~~~~~g~~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~li 341 (877)
..+...| ++++|...+++....-...+. ...+.+...+...|++++|...+++.... |. .....++..+.
T Consensus 460 ~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 460 QVAINDG-DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHhCC-CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 3355778 999999999998763212122 23455666778899999999999888753 11 11134556677
Q ss_pred HHHHHcCCHHHHHHHHHHchhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHH
Q 002814 342 DAICKGAQMDLAFEIMAEMPAK----NIS--P-NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLG--IGL--DRVSYNTV 410 (877)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~m~~~----g~~--p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p--d~~~~~~l 410 (877)
..+...|++++|.+.+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 7888999999999998876542 211 1 23345566677788899999999998875431 112 23344556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHH
Q 002814 411 LSIYAKLGRFEEALLVCKEMESSGIR-KDAVTY-----NALLGGYGKQGKYDEVRRMFEQMKADCVSPNL---LTYSTLI 481 (877)
Q Consensus 411 i~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~li 481 (877)
...+...|+.++|...+++.....-. .....+ ...+..+...|+.+.|.+.+............ ..+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 67788999999999999887542101 111111 11234456689999999998776543211111 1234667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002814 482 DVYSKGGLYKEAMQIFREFKQA----GLKAD-VVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (877)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (877)
.++...|+.++|...+++.... |...+ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7788899999999999987653 32222 345667778899999999999999999875
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5e-05 Score=83.78 Aligned_cols=230 Identities=17% Similarity=0.163 Sum_probs=148.7
Q ss_pred HHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-C--------CCCCHHHHHHHH
Q 002814 165 ELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE-G--------YGNTVYAFSALI 235 (877)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g--------~~~~~~~~~~li 235 (877)
-|...|+.+.|.+....+ ....+|..|..+|.+.+++|-|.-.+..|... | -.++ ..-....
T Consensus 737 fyvtiG~MD~AfksI~~I--------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvA 807 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFI--------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVA 807 (1416)
T ss_pred EEEEeccHHHHHHHHHHH--------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHH
Confidence 356778888887765433 23358899999999999999998888777542 1 1111 1112222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 315 (877)
-.....|.+++|..+|.+.++ |..|=+.|...| .+++|.++-+.--+. . =..||.....-+...++.
T Consensus 808 vLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g-~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQG-MWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcc-cHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccH
Confidence 334577889999999988875 344445566677 889988887653332 2 234666666777778889
Q ss_pred HHHHHHHHHHHHc----------C---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHH
Q 002814 316 EAARNLFNEMVHR----------G---------IDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376 (877)
Q Consensus 316 ~~A~~~~~~m~~~----------g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li 376 (877)
+.|++.|++.-.. . -..|...|.-...-+-..|++|.|+.+|....+ |-.++
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~V 945 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMV 945 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhe
Confidence 9999988864211 0 012333444444444556777777777765443 55667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEME 431 (877)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (877)
+..|-.|+.++|-.+-++ .-|......|...|...|++.+|...|.+..
T Consensus 946 rI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 777777777777766554 2266666777788888888888888876654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-05 Score=85.61 Aligned_cols=192 Identities=18% Similarity=0.326 Sum_probs=123.4
Q ss_pred HHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 002814 341 LDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420 (877)
Q Consensus 341 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 420 (877)
+.+.....++.+|+.+++.+..... -..-|..+.+-|...|+++-|.++|.+.- .++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 4445566777778877777766522 22346667777888888888888776532 245567778888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002814 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREF 500 (877)
Q Consensus 421 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 500 (877)
++|.++-.+.. |-......|.+-..-+-+.|++.+|.++|-.+- .|+ .-|.+|-+.|..++.+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 88877765543 323445566666666777788888877765442 233 2466777788777777766543
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHH
Q 002814 501 KQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDD 566 (877)
Q Consensus 501 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 566 (877)
.- ..-..|...+..-|...|++..|...|-+..+ |.+-+..|-..+.+++|.++
T Consensus 877 h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 877 HG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred Ch---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 21 11234556667777778888888877765543 55566667667777766554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6e-07 Score=95.63 Aligned_cols=233 Identities=16% Similarity=0.120 Sum_probs=164.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH
Q 002814 447 GGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (877)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 526 (877)
.-+.+.|++.+|.-.|+..+... +-+...|.-|...-...++-..|+..+++..+... -+......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHH
Confidence 34567888888888888877763 33577888888888888888888888888877653 36777777777888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHH
Q 002814 527 SAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFG 606 (877)
Q Consensus 527 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (877)
+|++.|+.-+.... . |..+..+ ...++.+.. . .
T Consensus 371 ~Al~~L~~Wi~~~p--~---y~~l~~a-~~~~~~~~~----------------------~---------s---------- 403 (579)
T KOG1125|consen 371 QALKMLDKWIRNKP--K---YVHLVSA-GENEDFENT----------------------K---------S---------- 403 (579)
T ss_pred HHHHHHHHHHHhCc--c---chhcccc-CccccccCC----------------------c---------C----------
Confidence 88888877765421 1 1111100 001111000 0 0
Q ss_pred HHHHHHhcCCcchhhhhHhHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHH
Q 002814 607 QLVAEKAGQGKKENRCRQEILCILGVFQKMH-KLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGL 685 (877)
Q Consensus 607 ~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~-~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l 685 (877)
...........++|-++. +.+.++|..+..+|+-.|.-.|.+++|...|+.++..+|+++..++.|
T Consensus 404 -------------~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL 470 (579)
T KOG1125|consen 404 -------------FLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL 470 (579)
T ss_pred -------------CCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence 000001222344555554 556456666677788888899999999999999999999999999999
Q ss_pred hhccc-cchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhh
Q 002814 686 LMGYR-DNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 686 ~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (877)
...+. ..+.++|++.+.+++++.| .-..+...|+-.|..+|.+++|.+.+..++..
T Consensus 471 GAtLAN~~~s~EAIsAY~rALqLqP-~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 471 GATLANGNRSEEAISAYNRALQLQP-GYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred hHHhcCCcccHHHHHHHHHHHhcCC-CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 77764 4578999999999999999 66677778999999999999999999887653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.5e-07 Score=93.77 Aligned_cols=270 Identities=13% Similarity=0.098 Sum_probs=161.0
Q ss_pred HHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 344 ICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEA 423 (877)
Q Consensus 344 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 423 (877)
+.-.|++..++.-.+ .....-..+......+.++|...|+++.++. ++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 445677777775555 2222212234445566777888888765543 333333 55656655555544443455555
Q ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 424 LLVCKEMESSGIR-KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 424 ~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
+.-+++....... .+.........+|...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555444333322 23333333345677788999888887653 3677777888899999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhh
Q 002814 503 AGLKADVVLYSALIDALCK----NGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (877)
Q Consensus 503 ~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (877)
.+ .|.. ..-+..++.. .+.+.+|..+|+++.+. ..++..+.+.+.-++...|++++|...+.+++..++.
T Consensus 160 ~~--eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-- 233 (290)
T PF04733_consen 160 ID--EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-- 233 (290)
T ss_dssp CS--CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC--
T ss_pred cC--CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC--
Confidence 53 3433 3334443332 23589999999998764 5677788888888888888888776665554432221
Q ss_pred hhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 002814 579 NLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRC 658 (877)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~ 658 (877)
|..|...++-++.+.
T Consensus 234 -----------------------------------------------------------------~~d~LaNliv~~~~~ 248 (290)
T PF04733_consen 234 -----------------------------------------------------------------DPDTLANLIVCSLHL 248 (290)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHHHHT
T ss_pred -----------------------------------------------------------------CHHHHHHHHHHHHHh
Confidence 333555566666677
Q ss_pred CCH-HHHHHHHHHHHhcCCcchhHHHHHhhccccchHHHHHHHHHHHh
Q 002814 659 NSF-EDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVK 705 (877)
Q Consensus 659 g~~-~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~ 705 (877)
|+. +.+.+++.++...+|.+..+ .++.+....|+++.
T Consensus 249 gk~~~~~~~~l~qL~~~~p~h~~~----------~~~~~~~~~FD~~~ 286 (290)
T PF04733_consen 249 GKPTEAAERYLSQLKQSNPNHPLV----------KDLAEKEAEFDRAV 286 (290)
T ss_dssp T-TCHHHHHHHHHCHHHTTTSHHH----------HHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHhCCCChHH----------HHHHHHHHHHHHHH
Confidence 776 66777888888777765443 24556666676654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.2e-06 Score=85.95 Aligned_cols=210 Identities=10% Similarity=0.066 Sum_probs=150.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLG-KVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
-..+...++.++|+.+...++..+ |.+..+++....++.+.| ++++++..+++++....+ +..+|+.....+.+.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~ln---P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLN---PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 334556778899999999999885 556677877777788887 579999999999887544 677888777667777
Q ss_pred CCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC---CC--
Q 002814 242 GYC--QEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG---GL-- 314 (877)
Q Consensus 242 g~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~-- 314 (877)
|+. ++++++++++.+...+ |..+|+...-++...| +++++++.++++++.++. |...|+....++.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~-~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLG-GWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 763 6788888888876654 7888998888888888 899999999999987655 666676666555544 22
Q ss_pred --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH
Q 002814 315 --WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG----AQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK 381 (877)
Q Consensus 315 --~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~ 381 (877)
.++......+++... +-|...|+.+...+... ++..+|.+.+.+....++. +......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 245666666666653 34667777777777662 3445677777776554332 55666667777764
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00025 Score=75.31 Aligned_cols=424 Identities=11% Similarity=0.136 Sum_probs=223.7
Q ss_pred CChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 002814 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV 269 (877)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 269 (877)
|.+...|..||+-+... -.+++++.++++... ++.....|..-|..-.+..+++....+|.++...- -+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 55677888888876665 888999999988875 34467788888888888889999999998887632 356677776
Q ss_pred HHHHHcCCCCH----HHHHHHHHHHH-HCCCCCCHH-HHHHHHHH---------HHhCCCHHHHHHHHHHHHHcCCCCCH
Q 002814 270 IDACGKGGVDF----KHVVEIFDDML-RNGVQPDRI-TFNSLLAV---------CSRGGLWEAARNLFNEMVHRGIDQDI 334 (877)
Q Consensus 270 l~~~~~~g~~~----~~a~~~~~~m~-~~g~~p~~~-t~~~ll~~---------~~~~g~~~~A~~~~~~m~~~g~~~~~ 334 (877)
|.-..+..... +...+.|+-.+ +.|+.+-.. .|+..+.. |....+++..+++|++++..-+..=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 66543322122 22233344333 345433322 24444332 22334556666666666653211111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHH-------
Q 002814 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKF--LGIGLDRV------- 405 (877)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~------- 405 (877)
..|+-... ++..+ |..|-.-+|. -+...+-.|..+++++.. .|+..+..
T Consensus 173 kLW~DY~~-------fE~~I-------------N~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T 230 (656)
T KOG1914|consen 173 KLWKDYEA-------FEQEI-------------NIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGT 230 (656)
T ss_pred HHHHHHHH-------HHHHH-------------HHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Confidence 22221110 11100 1111111110 011122233333333321 11111111
Q ss_pred --------HHHHHHHHHHHcC------CH--HHHHHHHHH-HHHCCCCCCHHHHHH-----HHHHHHHcCC-------HH
Q 002814 406 --------SYNTVLSIYAKLG------RF--EEALLVCKE-MESSGIRKDAVTYNA-----LLGGYGKQGK-------YD 456 (877)
Q Consensus 406 --------~~~~li~~~~~~g------~~--~~A~~~~~~-m~~~g~~~~~~~~~~-----li~~~~~~g~-------~~ 456 (877)
.|..+|.---..+ .. ....-++++ |.-.++.|++.-..+ .-+.+...|+ -+
T Consensus 231 ~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~ 310 (656)
T KOG1914|consen 231 KDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTD 310 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHH
Confidence 1222222111100 00 011111111 112222232221111 1112333333 45
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002814 457 EVRRMFEQMKADCVSPNLLTYSTLIDVYSKG---GLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLD 533 (877)
Q Consensus 457 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 533 (877)
++..+++..++.-..-+..+|..+.+-=-.. ...+.....++++...-..--..+|-.++..-.+..-++.|..+|.
T Consensus 311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ 390 (656)
T KOG1914|consen 311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFK 390 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence 6666666655432233444444443321111 1355666777777654322234567778888888888999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHH
Q 002814 534 EMTKEGIRP-NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEK 612 (877)
Q Consensus 534 ~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (877)
++++.+..+ .+.++.+++.-+|. ++.+-|.++++-.|+.+.+.+.+ ....+..+..++
T Consensus 391 kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~y-----------------v~~YldfL~~lN--- 449 (656)
T KOG1914|consen 391 KAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEY-----------------VLKYLDFLSHLN--- 449 (656)
T ss_pred HHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHH-----------------HHHHHHHHHHhC---
Confidence 999988777 66688888888765 56778888888888887776522 233333333332
Q ss_pred hcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 002814 613 AGQGKKENRCRQEILCILGVFQKMHKLKIKPNV--VTFSAILNACSRCNSFEDASMLLEELR 672 (877)
Q Consensus 613 ~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~--~t~~~ll~a~~~~g~~~eA~~~~~~~~ 672 (877)
+-..|..+|++.+..++.||. .+|..+|+-=+.-|++..+.++-+.+.
T Consensus 450 ------------dd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 450 ------------DDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred ------------cchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 122366799998887666665 458888877778888888877766654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.8e-06 Score=90.65 Aligned_cols=252 Identities=15% Similarity=0.096 Sum_probs=134.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH
Q 002814 202 ILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK 281 (877)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 281 (877)
.+.+.|++.+|.-.|+.+++..+. ++.+|..|......+++-..|+..+.++.+.... |..+.-.|.-.|...| .-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg-~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEG-LQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhh-hHH
Confidence 355666666666666666665433 5666666666666666666666666666664322 4445555555566555 445
Q ss_pred HHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHH
Q 002814 282 HVVEIFDDMLRNGVQ--------PDRITFNSLLAVCSRGGLWEAARNLFNEMV-HRGIDQDIFTYNTLLDAICKGAQMDL 352 (877)
Q Consensus 282 ~a~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~~~~ 352 (877)
.|++.+++-++..++ .+..+-.. +.+.....+....++|-++. ..+...|..++..|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 566666555443210 00000000 11112222333444444433 33334566666666666666667777
Q ss_pred HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 353 AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR-VSYNTVLSIYAKLGRFEEALLVCKEME 431 (877)
Q Consensus 353 A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (877)
|++.|+..+..... |...||-|...++...+.++|+..|.+.++. +|+- .+...|.-.|...|.+++|.+.|-..+
T Consensus 449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 77777666654322 5566666666666666677777777766655 4442 233334445666667766666665433
Q ss_pred HC---------CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002814 432 SS---------GIRKDAVTYNALLGGYGKQGKYDEVRRM 461 (877)
Q Consensus 432 ~~---------g~~~~~~~~~~li~~~~~~g~~~~A~~~ 461 (877)
.. +..++...|.+|=.++.-.++.|.+.+.
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 21 0112345666665566666666644443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-05 Score=92.69 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=155.7
Q ss_pred hhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCC--ChHHHHHHHHHHHHhcCChHHHHHHHH
Q 002814 140 VSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKN--DQGKLASAMISILGRLGKVDLAKNIFE 217 (877)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~ 217 (877)
+..++..+.....+-+.-.|...+....+.++.++|++++++++..-.... +-..+|.++++....-|.-+...++|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 344455555444444455666677777788888888888888886532211 123467777777777777788888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC
Q 002814 218 TALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP 297 (877)
Q Consensus 218 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p 297 (877)
++.+. -....+|..|...|.+.+++++|.++|+.|.+. +......|...+..+.+.. +-+.|..++.++++.=.+.
T Consensus 1522 RAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~n-e~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1522 RACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQN-EAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhccc-HHHHHHHHHHHHHhhcchh
Confidence 88764 123457788888888888888888888888753 2246677888888888877 7788888888887642111
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCC
Q 002814 298 -DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN 368 (877)
Q Consensus 298 -~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 368 (877)
........+..-.+.|+.+.++.+|+..+... +--...|+.++++-.+.|+.+.++.+|++....++.+-
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 22334444555567888888888888877652 33567788888888888888888888888887766543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.5e-05 Score=80.87 Aligned_cols=207 Identities=10% Similarity=0.065 Sum_probs=144.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCC--
Q 002814 203 LGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG-YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVD-- 279 (877)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-- 279 (877)
+...++.++|+.+.++++...+. +..+|+....++...| .++++++.++++.+...+ +..+|+...-.+.+.+ .
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~-~~~ 123 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLG-PDA 123 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcC-chh
Confidence 44456778899999999886543 5668887777777777 679999999999986554 6667876665565666 4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCH----HH
Q 002814 280 FKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG---AQM----DL 352 (877)
Q Consensus 280 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~----~~ 352 (877)
.++++.+++++++...+ |..+|+....++...|+++++++.++++++.+.. |..+|+.....+.+. |.. ++
T Consensus 124 ~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 36788888888877544 6778888888888889999999999999987644 667777766665554 222 35
Q ss_pred HHHHHHHchhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 353 AFEIMAEMPAKNISPNVVTYSTMIDGYAKA----GRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK 416 (877)
Q Consensus 353 A~~~~~~m~~~g~~pd~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~ 416 (877)
+++...++...... |...|+.+...+... ++..+|.+.+.+....+ ..+......|++.|+.
T Consensus 202 el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 66666566655332 667777777777662 33455767666655543 3355566666666664
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-06 Score=89.61 Aligned_cols=148 Identities=19% Similarity=0.206 Sum_probs=65.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHcCC
Q 002814 379 YAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY----GKQGK 454 (877)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~g~ 454 (877)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .|... ..+..++ .....
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l-~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSIL-TQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHH-HHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHH-HHHHHHHHHHHhCchh
Confidence 33345555555444321 233344444455555555555555555554432 22211 1122221 11224
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHH
Q 002814 455 YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLV-ESAVSLLD 533 (877)
Q Consensus 455 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~ 533 (877)
+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+. -+..+...+|.+....|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 55555555555443 344555555555555555555555555555544332 2344444455555555554 34445555
Q ss_pred HHHH
Q 002814 534 EMTK 537 (877)
Q Consensus 534 ~m~~ 537 (877)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 5544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.3e-05 Score=91.37 Aligned_cols=199 Identities=14% Similarity=0.073 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 002814 264 VTYNAVIDACGKGGVDFKHVVEIFDDMLRN-GVQP---DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNT 339 (877)
Q Consensus 264 ~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~-g~~p---~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 339 (877)
..|-..|.-....+ +.++|.+++++++.. ++.- -...|.++++.-..-|.-+...++|+++.+.- .-..+|..
T Consensus 1459 i~WI~YMaf~Lels-EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELS-EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred hHHHHHHHHHhhhh-hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 33444444444444 445555555444432 0100 01223333333333344444444555444431 11233444
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHH
Q 002814 340 LLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD---RVSYNTVLSIYAK 416 (877)
Q Consensus 340 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~~~~~li~~~~~ 416 (877)
|...|.+.+.+++|.++|+.|.++ +.-....|...+..+.+.++-+.|..++.+..+. -|. .....-.+..-.+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhh
Confidence 444555555555555555554443 1123344444444444444444444444444433 121 1112222333344
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002814 417 LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC 469 (877)
Q Consensus 417 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 469 (877)
.|+.+.+..+|+..+... +.-...|+..|++-.+.|+.+.++.+|+++.+.+
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 444444444444444332 3334444444444444444444444444444443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.0001 Score=72.08 Aligned_cols=261 Identities=16% Similarity=0.122 Sum_probs=131.3
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002814 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (877)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 234 (877)
+....+.+..+|-...++..|-.+|+..-..- |.....----...+-+.+.+.+|.++...|... ++...-..-
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lq 116 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQ 116 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHH
Confidence 44445556666666677777777777665542 222222122244555666777777776666432 111111111
Q ss_pred HHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 002814 235 ISA--YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN-GVQPDRITFNSLLAVCSR 311 (877)
Q Consensus 235 i~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~ 311 (877)
+.+ ....+++..+..+.++....| +..+.+...-...+.| +++.|.+-|+...+- |.. ....|+..+. ..+
T Consensus 117 LqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg-qyEaAvqkFqaAlqvsGyq-pllAYniALa-Hy~ 190 (459)
T KOG4340|consen 117 LQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG-QYEAAVQKFQAALQVSGYQ-PLLAYNLALA-HYS 190 (459)
T ss_pred HHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc-cHHHHHHHHHHHHhhcCCC-chhHHHHHHH-HHh
Confidence 111 223456666666666655321 3333333333345666 677777777776654 333 3445554443 334
Q ss_pred CCCHHHHHHHHHHHHHcCCC-------------CCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHchhC
Q 002814 312 GGLWEAARNLFNEMVHRGID-------------QDIF---------------TYNTLLDAICKGAQMDLAFEIMAEMPAK 363 (877)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~-------------~~~~---------------~~~~li~~~~~~g~~~~A~~~~~~m~~~ 363 (877)
.|+++.|.+...+++++|+. +|+. .+|.-...+.+.|+++.|.+.+-.|.-+
T Consensus 191 ~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPR 270 (459)
T KOG4340|consen 191 SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPR 270 (459)
T ss_pred hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCc
Confidence 56777777777777666531 1111 1122222344566666666666666532
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002814 364 -NISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKE 429 (877)
Q Consensus 364 -g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 429 (877)
....|.+|...+.-.= ..+++.+..+-+.-+.... +-...||..++-.||+..-++.|-.++.+
T Consensus 271 aE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 271 AEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 1234555554433211 1233333444344444332 23456666666667776666666666543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-07 Score=61.94 Aligned_cols=34 Identities=21% Similarity=0.537 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 002814 639 LKIKPNVVTFSAILNACSRCNSFEDASMLLEELR 672 (877)
Q Consensus 639 ~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~ 672 (877)
.|+.||.+||++|+++||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3799999999999999999999999999999983
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.7e-07 Score=61.47 Aligned_cols=32 Identities=50% Similarity=0.932 Sum_probs=17.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 002814 329 GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEM 360 (877)
Q Consensus 329 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 360 (877)
|+.||.++||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.5e-06 Score=89.24 Aligned_cols=218 Identities=13% Similarity=0.029 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYA 415 (877)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 415 (877)
.-..+...+...|-...|..+|+++. .|.-+|.+|+..|+..+|..+..+..++ +||...|..+++...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456677788888888888888654 4667788888888888888888877774 788888888888777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002814 416 KLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQ 495 (877)
Q Consensus 416 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 495 (877)
...-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +-...+|-.+..+..+.++++.|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 767788888887665421 22223333344788888888888776653 3356778778888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhh
Q 002814 496 IFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQ 574 (877)
Q Consensus 496 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~ 574 (877)
.|.......+ -+...||.+-.+|.+.|+..+|...+++..+.+ .-+...|...+-...+.|.++.|++.+.+.+...
T Consensus 541 aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 541 AFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 8888876432 256688888888888888888888888888765 3344566666666678888888888777766543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.1e-05 Score=78.84 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTV--YAFSA 233 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~ 233 (877)
++.+......+.+.|++++|+..|+.++...+..+.....+..+..++.+.|++++|...|+++++..+.... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 4455556667777777777777777777664322222235566677777777777777777777665332111 23444
Q ss_pred HHHHHHhc--------CCHHHHHHHHHHHHh
Q 002814 234 LISAYGRS--------GYCQEAISVFNSMKR 256 (877)
Q Consensus 234 li~~~~~~--------g~~~~A~~~~~~m~~ 256 (877)
+..++.+. |+.++|++.|+++.+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 143 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIR 143 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 44444433 445555555555544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.4e-05 Score=87.57 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc
Q 002814 645 VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY 689 (877)
Q Consensus 645 ~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 689 (877)
+.++.-|-.-|....+++++..+++.+++.++.+....+.++..|
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y 267 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFY 267 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 334445555666667777888888877777777777776665544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.1e-05 Score=86.35 Aligned_cols=214 Identities=14% Similarity=0.071 Sum_probs=176.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc
Q 002814 303 NSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA 382 (877)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 382 (877)
..+...+.+.|-...|..+|+++. .|...|.+|+..|+.++|..+..+..++ +||...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 456677888999999999998764 4677899999999999999999888774 68999999999988888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 383 GRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMF 462 (877)
Q Consensus 383 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 462 (877)
--+++|.++++..... .-..+.....+.++++++.+.|+.-.+.. +.-..+|..+..+..+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 8899999998865432 11222222344789999999999877765 567889999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 463 EQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 463 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
...... -+-+...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.+|.+
T Consensus 543 ~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 543 HRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 998875 23357899999999999999999999999999876 34666777777788899999999999999875
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=5e-06 Score=76.74 Aligned_cols=109 Identities=10% Similarity=0.084 Sum_probs=94.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCC
Q 002814 631 GVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 631 ~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (877)
.+|++.++ +.|+. +..+..++...|++++|...|+.+...+|.+..+..++...+ ..|++++|+..|+++++++|
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 47777776 66775 446788889999999999999999999999988887776554 78999999999999999999
Q ss_pred CcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhhc
Q 002814 710 STASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (877)
Q Consensus 710 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (877)
.+..++..++.++...|++++|...+..+.....
T Consensus 90 -~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 90 -SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred -CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7899999999999999999999999999877654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00021 Score=83.34 Aligned_cols=172 Identities=13% Similarity=0.108 Sum_probs=99.0
Q ss_pred CCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 002814 189 KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNA 268 (877)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 268 (877)
.+.+..++..|+..+...+++++|.++.+..++..+. ....|-.+...+.+.++.+++..+ .
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 3455666677777777777777777777766654322 233333343455566654444433 2
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 002814 269 VIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA 348 (877)
Q Consensus 269 ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 348 (877)
++....... ++..+..++..|... .-+...+..|..+|.+.|+.++|..+|+++++.. +-|..+.|.+...|...
T Consensus 89 ~l~~~~~~~-~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 89 LIDSFSQNL-KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred hhhhccccc-chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-
Confidence 222223333 343333333344432 2234466667777777777777777777777765 33667777777777777
Q ss_pred CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 349 QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (877)
Q Consensus 349 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (877)
++++|++++.+.... |...+++.++.+++.++...
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 777777776665543 45555666666666666654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.011 Score=67.06 Aligned_cols=219 Identities=15% Similarity=0.132 Sum_probs=133.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002814 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA--CGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (877)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 316 (877)
...+++.+|+...+++.+. .||. .|..++.+ ..+.| ..++|..+++.....+.. |..|...+-.+|...++.+
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~g-k~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLG-KGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhc-CchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 3567888888888887763 2443 33444444 35667 778888777777665544 7788888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC--------
Q 002814 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDL----AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR-------- 384 (877)
Q Consensus 317 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~-------- 384 (877)
+|..+|++.... .|+......+..+|.+.+.+.+ |+++++...+ +...+-++++.+.+.-.
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-----~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-----RAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----ccchHHHHHHHHHHhccCCcccccc
Confidence 888888888775 3567777777788888777654 5555554333 55566666666654321
Q ss_pred --HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 385 --LDDALNMFSEMKFLGIGLD-RVSYNTVLSIYAKLGRFEEALLVCK-EMESSGIRKDAVTYNALLGGYGKQGKYDEVRR 460 (877)
Q Consensus 385 --~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 460 (877)
..-|.+.++.+.+.+-+.. ..-...-...+...|++++|.+++. ...+.-..-+...-+.-++.+...+++.+..+
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 1234444555544431111 1111122233445667777777773 33333333444555556667777777777777
Q ss_pred HHHHHHHCC
Q 002814 461 MFEQMKADC 469 (877)
Q Consensus 461 ~~~~m~~~g 469 (877)
+-.++...|
T Consensus 248 l~~~Ll~k~ 256 (932)
T KOG2053|consen 248 LSSRLLEKG 256 (932)
T ss_pred HHHHHHHhC
Confidence 777777664
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.7e-05 Score=77.50 Aligned_cols=185 Identities=13% Similarity=0.024 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHH
Q 002814 333 DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNV---VTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR--VSY 407 (877)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~~~ 407 (877)
....+..+...+.+.|++++|...|+++...... +. .++..+..+|.+.|++++|+..++++.+..-.... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 4555666666666666676666666666554211 11 34555566666666666666666666654211011 133
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 408 NTVLSIYAKL--------GRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYST 479 (877)
Q Consensus 408 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 479 (877)
..+..++.+. |+.++|.+.|+.+.+.. +.+...+.++..... ... ... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~~--------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RLA--------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HHH--------HHHHH
Confidence 3344444433 44555555555555432 222222221111100 000 000 00113
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 480 LIDVYSKGGLYKEAMQIFREFKQAGL--KADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
+...|.+.|++++|...|++..+... +.....+..+..++.+.|++++|..+++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445566666666666666655421 11234555666666666666666666665544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00014 Score=84.17 Aligned_cols=164 Identities=8% Similarity=0.004 Sum_probs=126.7
Q ss_pred CCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 002814 189 KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNA 268 (877)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 268 (877)
.+.+...+..|..+....|++++|..+++.+.+..+. +..++..++..+.+.+++++|+..+++....... +....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 3555678888999999999999999999999887443 6788888999999999999999999999886543 5666777
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 002814 269 VIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA 348 (877)
Q Consensus 269 ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 348 (877)
+..++.+.| ++++|..+|+++...+. -+..++..+...+.+.|+.++|...|++..+.- .+...-|+.++.
T Consensus 160 ~a~~l~~~g-~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------ 230 (694)
T PRK15179 160 EAKSWDEIG-QSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------ 230 (694)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------
Confidence 777788899 99999999999998433 257888889999999999999999999998752 234455555443
Q ss_pred CHHHHHHHHHHchhC
Q 002814 349 QMDLAFEIMAEMPAK 363 (877)
Q Consensus 349 ~~~~A~~~~~~m~~~ 363 (877)
++..-...++++.-.
T Consensus 231 ~~~~~~~~~~~~~~~ 245 (694)
T PRK15179 231 DLNADLAALRRLGVE 245 (694)
T ss_pred HHHHHHHHHHHcCcc
Confidence 233334455555443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00014 Score=70.79 Aligned_cols=160 Identities=17% Similarity=0.116 Sum_probs=107.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 373 STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ 452 (877)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 452 (877)
..+-..+...|+-+....+........ .-|.......+....+.|++.+|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 444555666666666666655543321 3455555567777777777777777777777655 67777777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002814 453 GKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLL 532 (877)
Q Consensus 453 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (877)
|++++|..-|.+..+.. .-+...+|.|...|.-.|+.+.|..++......+. -|...-..+.-.....|++++|.++-
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777777777652 33556667777777777777777777777766542 36666666666777777777777765
Q ss_pred HHHH
Q 002814 533 DEMT 536 (877)
Q Consensus 533 ~~m~ 536 (877)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00012 Score=71.62 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=83.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 002814 417 LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVY-SKGGL--YKEA 493 (877)
Q Consensus 417 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~-~~~g~--~~~A 493 (877)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 456667776777666655 6677777777777777777777777777777653 33566666666653 55565 4777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002814 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (877)
Q Consensus 494 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (877)
.+++++..+.+.. +...+..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7787777776533 6677777777777788888888888887765
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00054 Score=72.46 Aligned_cols=150 Identities=17% Similarity=0.143 Sum_probs=107.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 002814 376 IDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKY 455 (877)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 455 (877)
.-.+...|++++|+..+..++..- +-|........+.+.+.++.++|.+.++++.... +........+.++|.+.|+.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCCh
Confidence 334556788888888888877662 3344455556678888888888888888888764 22366667778888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002814 456 DEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEM 535 (877)
Q Consensus 456 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 535 (877)
.+|+++++..... .+-|...|..|..+|...|+..++..-..+ +|...|++++|+..+...
T Consensus 391 ~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHH
Confidence 8888888887765 455788888888888888887777655433 355678888888888887
Q ss_pred HHCCCCCCHHHH
Q 002814 536 TKEGIRPNVVTY 547 (877)
Q Consensus 536 ~~~g~~p~~~~~ 547 (877)
.+. .+.+..+|
T Consensus 452 ~~~-~~~~~~~~ 462 (484)
T COG4783 452 SQQ-VKLGFPDW 462 (484)
T ss_pred HHh-ccCCcHHH
Confidence 765 33444444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00011 Score=71.87 Aligned_cols=119 Identities=12% Similarity=0.147 Sum_probs=70.5
Q ss_pred cCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCC--HHHH
Q 002814 347 GAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSI-YAKLGR--FEEA 423 (877)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~-~~~~g~--~~~A 423 (877)
.++.++++..++...+.+. .|...|..+...|...|++++|...|++..+.. +-+...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 3445555555555554432 256666666666666666666666666666553 3345555555554 345555 3666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 424 LLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (877)
Q Consensus 424 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (877)
.+++++..+.+ +.+..++..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666655 445666666666666666666666666666654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00051 Score=66.75 Aligned_cols=118 Identities=18% Similarity=0.199 Sum_probs=59.6
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH----c
Q 002814 307 AVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK----A 382 (877)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~ 382 (877)
..|++.|++++|.+...... +......=+..+.+..+++-|.+.+++|.+- -+..|.+.|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 44555566666655544411 2223333334444555556666666666553 244455544444443 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002814 383 GRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG 434 (877)
Q Consensus 383 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 434 (877)
+++.+|.-+|++|-++ ..|+..+.+-...++...|++++|..++++.....
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 3455555555555543 24555555555555555555555555555555444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00016 Score=70.33 Aligned_cols=167 Identities=16% Similarity=0.102 Sum_probs=121.5
Q ss_pred CChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 002814 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV 269 (877)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 269 (877)
+.+..+ ..+...+.-.|+-+....+....... ...+....+.++....+.|++.+|+..|++..... .+|..+|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 444445 55666677777777777777765443 23356677778888888888888888888887643 3477888888
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 002814 270 IDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQ 349 (877)
Q Consensus 270 l~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 349 (877)
..+|.+.| +++.|..-|.+..+.-.. +...++.|.-.|.-.|+++.|..++......+ .-|..+-..|.-.....|+
T Consensus 141 gaaldq~G-r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 141 GAALDQLG-RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHHcc-ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCC
Confidence 88888888 888888888888876333 55667777777778888888888888877654 2367777778888888888
Q ss_pred HHHHHHHHHHchh
Q 002814 350 MDLAFEIMAEMPA 362 (877)
Q Consensus 350 ~~~A~~~~~~m~~ 362 (877)
+++|.++...-..
T Consensus 218 ~~~A~~i~~~e~~ 230 (257)
T COG5010 218 FREAEDIAVQELL 230 (257)
T ss_pred hHHHHhhcccccc
Confidence 8888877665443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0001 Score=85.37 Aligned_cols=147 Identities=11% Similarity=0.088 Sum_probs=125.4
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 002814 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFS 232 (877)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 232 (877)
+..++.+..|.....+.|++++|..+++.++... |++..+...++.++.+.+++++|...+++.+...+. +....+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 3457778889999999999999999999999985 677788999999999999999999999999988654 788889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002814 233 ALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLL 306 (877)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 306 (877)
.+..++.+.|++++|+++|+++...+.. +..++..+..++...| +.++|...|++.++. ..+....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G-~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRG-ALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 9999999999999999999999984432 4788999999999999 999999999999875 233445555544
|
|
| >smart00463 SMR Small MutS-related domain | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.3e-06 Score=68.82 Aligned_cols=76 Identities=30% Similarity=0.349 Sum_probs=63.0
Q ss_pred cchhhccchHHHHHHHHHHHHHHHHhhhccCCCCCceeEEeeccccccccCchhhHHHHHHHHhcCCCCcccccCCCceE
Q 002814 753 CLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAPFWVANCNLGRF 832 (877)
Q Consensus 753 ~~dl~~~s~g~a~~~~~~w~~~~~~~~~~~~~~p~~~~i~~g~g~h~~~~~~~~~~~~i~~~l~~l~~pf~~~~~~~g~~ 832 (877)
.+|||.++.++|..++..|+.+.+.. + .+..+.|+||.|+|+. .|.+.+++.|..++...+-+|..+ .|.|++
T Consensus 3 ~lDLHG~~~~eA~~~l~~~l~~~~~~---~--~~~~~~II~G~G~~s~-~g~~~i~~~l~~~l~~~~~~~~~~-~~~G~~ 75 (80)
T smart00463 3 SLDLHGLTVEEALTALDKFLNNARLK---G--LEQKLVIITGKGKHSL-GGKSGVKPALKEHLRVESFRFAEE-GNSGVL 75 (80)
T ss_pred eEEcCCCCHHHHHHHHHHHHHHHHHc---C--CCceEEEEEcccCCCc-cchhhHHHHHHhchhhcccccCCC-CCCeEE
Confidence 58999999999999999999887753 1 1267999999999986 467788999999999877777665 899998
Q ss_pred Eec
Q 002814 833 IST 835 (877)
Q Consensus 833 ~~~ 835 (877)
+..
T Consensus 76 ~v~ 78 (80)
T smart00463 76 VVK 78 (80)
T ss_pred EEE
Confidence 764
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.6e-05 Score=70.35 Aligned_cols=98 Identities=14% Similarity=0.017 Sum_probs=75.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
|+.+......+.+.|++++|+..|.+++... |.+..++..+..++.+.|++++|...|+++....+ .+...+..+.
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg 99 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQ---PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTG 99 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHH
Confidence 4444456667778888888888888888775 44566778888888888888888888888887654 3677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 002814 236 SAYGRSGYCQEAISVFNSMKRY 257 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~ 257 (877)
.++.+.|++++|+..|+...+.
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888888764
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00096 Score=64.90 Aligned_cols=105 Identities=23% Similarity=0.231 Sum_probs=46.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002814 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK----QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLY 490 (877)
Q Consensus 415 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 490 (877)
.+..+++-|.+.+++|.+- .+..|.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+.+..++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 3444444444444444432 133333333333322 23345555555555443 344555555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002814 491 KEAMQIFREFKQAGLKADVVLYSALIDALCKNGL 524 (877)
Q Consensus 491 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 524 (877)
++|..++++...+... +..+...+|.+-...|.
T Consensus 224 eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 224 EEAESLLEEALDKDAK-DPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCC
Confidence 5555555555544322 34444334333333443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0024 Score=61.69 Aligned_cols=186 Identities=15% Similarity=0.160 Sum_probs=124.8
Q ss_pred CHHHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 279 DFKHVVEIFDDMLR---NG-VQPDRIT-FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLA 353 (877)
Q Consensus 279 ~~~~a~~~~~~m~~---~g-~~p~~~t-~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 353 (877)
+.++..+++.+++. .| ..++..+ |..++-+....|+.+.|..+++.+.+.- +-+..+-..-...+--.|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 56777777777763 24 4555544 4555566667888888888888887762 32333333333334557888888
Q ss_pred HHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 354 FEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS 433 (877)
Q Consensus 354 ~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 433 (877)
+++|+.+.+.+ +.|.+++---+...-..|+--+|++.+.+..+. +.-|...|.-+...|...|++++|.-.+++++-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 88888888775 347777777777777778877888877777665 4668888888888888888888888888888765
Q ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHC
Q 002814 434 GIRKDAVTYNALLGGYGKQG---KYDEVRRMFEQMKAD 468 (877)
Q Consensus 434 g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 468 (877)
. +-+...+..+.+.+.-.| +.+-|.++|.+.++.
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4 444555555555443333 345566666666554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.3e-05 Score=70.05 Aligned_cols=109 Identities=12% Similarity=0.098 Sum_probs=91.6
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCC
Q 002814 632 VFQKMHKLKIKPNV-VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 632 ~~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (877)
+|++.+. ..|+. .....++..+...|++++|.+.|+.+...+|.+..+...+...+ ..+++++|...++++++.+|
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5666665 56644 44667888899999999999999999998998877777665554 67899999999999999998
Q ss_pred CcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 710 STASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 710 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
.+..++..++.+|...|++++|..++..+.+..
T Consensus 83 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 83 -DDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 678889999999999999999999998877654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00079 Score=71.23 Aligned_cols=154 Identities=15% Similarity=0.101 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 002814 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD-RVSYNTVLSIY 414 (877)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~ 414 (877)
......-.+...|++++|+..++.+... .+-|...+....+.+.+.|+.++|.+.++++... .|+ ......+..+|
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~al 384 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHH
Confidence 3344445566789999999999998876 3346777778889999999999999999999987 555 66677888999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002814 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAM 494 (877)
Q Consensus 415 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 494 (877)
.+.|+..+|+.+++...... +.|...|..|..+|...|+..++..-..+ +|...|++++|.
T Consensus 385 l~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~ 445 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAI 445 (484)
T ss_pred HhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHH
Confidence 99999999999999988776 78899999999999999999888766555 456689999999
Q ss_pred HHHHHHHHCCCCCCHHHH
Q 002814 495 QIFREFKQAGLKADVVLY 512 (877)
Q Consensus 495 ~~~~~m~~~g~~p~~~~~ 512 (877)
..+....+.. +.+..+|
T Consensus 446 ~~l~~A~~~~-~~~~~~~ 462 (484)
T COG4783 446 IFLMRASQQV-KLGFPDW 462 (484)
T ss_pred HHHHHHHHhc-cCCcHHH
Confidence 9998887753 3344443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.6e-05 Score=69.02 Aligned_cols=95 Identities=13% Similarity=0.051 Sum_probs=85.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhc
Q 002814 648 FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHF 726 (877)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 726 (877)
.-++..-+...|++++|.++|+-+...||.+...+.++.+.+ ..|++++|+..+..+..++| +++..+..++.+|...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 445667778899999999999999999999998888887776 68999999999999999999 7888899999999999
Q ss_pred CchhhHHHHHHHhhhhh
Q 002814 727 GQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 727 g~~~~A~~~~~~~~~~~ 743 (877)
|+.++|++-|+.++...
T Consensus 117 G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999887654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00041 Score=63.50 Aligned_cols=97 Identities=24% Similarity=0.188 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDA 518 (877)
Q Consensus 439 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 518 (877)
......+...+.+.|++++|.+.|+.+...+ +.+...|..+...|.+.|++++|..+|+...+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3444455555666666666666666665542 2355566666666666666666666666665544 2345555556666
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 002814 519 LCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~ 537 (877)
|...|++++|+..|++..+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666665
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0078 Score=58.33 Aligned_cols=189 Identities=12% Similarity=0.105 Sum_probs=107.6
Q ss_pred CCHHHHHHHHHHHHHccc---cCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 002814 170 GEWSKAIQCFAFAVKREE---RKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQE 246 (877)
Q Consensus 170 g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 246 (877)
.+.++.++++..++.... .-++.-.+|..++-+....|+.+.|...++.+..+- +-+..+-..-...+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 345666666666553221 113334456666666677777777777777766542 2232222222223445677777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002814 247 AISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMV 326 (877)
Q Consensus 247 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~ 326 (877)
|+++|+.+.+.+.. |.++|-.-+......| .--+|++-+.+..+. +.-|...|.-|...|...|++++|.-.+++++
T Consensus 105 A~e~y~~lL~ddpt-~~v~~KRKlAilka~G-K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDDPT-DTVIRKRKLAILKAQG-KNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccCcc-hhHHHHHHHHHHHHcC-CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 77777777765532 5566665555555555 334555555555544 34467777777777777777777777777776
Q ss_pred HcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHchhC
Q 002814 327 HRGIDQDIFTYNTLLDAICKGA---QMDLAFEIMAEMPAK 363 (877)
Q Consensus 327 ~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 363 (877)
-.. +.+...+..+.+.+.-.| +++.|.+.|.+..+.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 542 223444444555443333 445566666666554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00013 Score=72.23 Aligned_cols=105 Identities=14% Similarity=0.186 Sum_probs=91.4
Q ss_pred hHhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHH
Q 002814 623 RQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSL 700 (877)
Q Consensus 623 ~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~ 700 (877)
.++|++|++.|.+.++ +.| |.+.|+.=.-||++.|.++.|.+-.+.++.+||......-.+.+.+ ..|++++|++.
T Consensus 94 ~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~a 171 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEA 171 (304)
T ss_pred hhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 3589999999999998 777 6777888999999999999999999999999998877777776655 68899999999
Q ss_pred HHHHhhcCCCcchhHHHHHHHHHHhcCchh
Q 002814 701 FDEVKLMDSSTASAFYNALTDMLWHFGQKR 730 (877)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 730 (877)
|+++++++| .|..+...|-++--++++..
T Consensus 172 ykKaLeldP-~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 172 YKKALELDP-DNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhhhccCC-CcHHHHHHHHHHHHHhcCCC
Confidence 999999999 78888888888777766655
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00048 Score=70.92 Aligned_cols=289 Identities=12% Similarity=0.038 Sum_probs=141.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 002814 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYD 456 (877)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 456 (877)
..+.+..++.+|++.+...++.. +-+..-|..-...+...|++++|.--.+.-++.. ......+.-.-+.+...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence 34555666667777777666653 2334444444555555666666655554443321 112223333333444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHH-HHHHcCChHHHHHHHHH
Q 002814 457 EVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL-KADVVLYSALID-ALCKNGLVESAVSLLDE 534 (877)
Q Consensus 457 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~-~~~~~g~~~~A~~~~~~ 534 (877)
+|.+.++. ...| ....|+..++....... +|...+|..+-. ++.-.|++++|..+--.
T Consensus 135 ~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 44444431 1111 11122222222222211 234455554433 44557777777766555
Q ss_pred HHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHH-h
Q 002814 535 MTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEK-A 613 (877)
Q Consensus 535 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 613 (877)
.++.. ..+......--.++.-.++.+.|+..+.++|...|+......+. .+..++...+ .
T Consensus 195 ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~------------------~~~k~le~~k~~ 255 (486)
T KOG0550|consen 195 ILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSAS------------------MMPKKLEVKKER 255 (486)
T ss_pred HHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHh------------------hhHHHHHHHHhh
Confidence 55431 11222222222234556677777777777777777643221110 0001110000 0
Q ss_pred cCCcchhhhhHhHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-
Q 002814 614 GQGKKENRCRQEILCILGVFQKMHKL---KIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY- 689 (877)
Q Consensus 614 g~~~~~~~~~~~~~~A~~~~~~m~~~---g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~- 689 (877)
| .+....|.+.+|.+.|.+.+.. .++|+...|.....+..+.|+..+|+.--+.+.++|+.-...+..-...+
T Consensus 256 g---N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 G---NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred h---hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 0 0011234667777788777641 23344445666666677788888888887777777765333221111111
Q ss_pred ccchHHHHHHHHHHHhhcCC
Q 002814 690 RDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~ 709 (877)
..+.|++|.+-++++.+.+.
T Consensus 333 ~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 34678888888888776654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00064 Score=72.84 Aligned_cols=119 Identities=15% Similarity=0.184 Sum_probs=56.3
Q ss_pred HHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 002814 341 LDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420 (877)
Q Consensus 341 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 420 (877)
+..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|++++++..... +-|...+..-...|.+.+++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 333344445555555555555442 22 22234444444455555555555544331 22333444444445555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM 465 (877)
Q Consensus 421 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 465 (877)
+.|+.+.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555555555442 233445555555555555555555555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.5e-05 Score=50.73 Aligned_cols=33 Identities=52% Similarity=0.920 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 002814 511 LYSALIDALCKNGLVESAVSLLDEMTKEGIRPN 543 (877)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 543 (877)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0066 Score=62.84 Aligned_cols=169 Identities=17% Similarity=0.085 Sum_probs=109.5
Q ss_pred CCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---
Q 002814 402 LDRVSYNTVL-SIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTY--- 477 (877)
Q Consensus 402 pd~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--- 477 (877)
|.-.++..+- ..+.-.|++++|..+--.+.+.+ ..+......-..++--.++.+.|...|++.+.. .|+...-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhH
Confidence 3334444443 35567788888888877777654 223322222223445577888999999888765 3443222
Q ss_pred ----------HHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 002814 478 ----------STLIDVYSKGGLYKEAMQIFREFKQAG---LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV 544 (877)
Q Consensus 478 ----------~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 544 (877)
..-..-..+.|++.+|.+.|.+.+... .+++...|........+.|+.++|+.-.++..+. .+..
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~sy 320 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSY 320 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHH
Confidence 112233467899999999999988643 4556667777777888899999999988888763 3222
Q ss_pred H-HHHHHHHHHhhcCChhhhHHHHHHHhhhhh
Q 002814 545 V-TYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (877)
Q Consensus 545 ~-~~~~li~~~~~~g~~~~a~~~~~~~l~~~~ 575 (877)
. .|..-..++.-.+++++|++.++++++...
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 333444456667888888888888777543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0019 Score=59.82 Aligned_cols=115 Identities=20% Similarity=0.251 Sum_probs=59.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 002814 417 LGRFEEALLVCKEMESSGIRKD---AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL--LTYSTLIDVYSKGGLYK 491 (877)
Q Consensus 417 ~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~ 491 (877)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......++. ...-.|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555666666666665543 222 122223345555666666666666666655322211 22333455555666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002814 492 EAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDE 534 (877)
Q Consensus 492 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (877)
+|+..++...... .....+....+.|.+.|+.++|...|+.
T Consensus 103 ~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666665432221 2334455555666666666666666654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0011 Score=58.80 Aligned_cols=102 Identities=15% Similarity=0.062 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGN--TVYAFSAL 234 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~l 234 (877)
+.+..++..+.+.|++++|.+.|..++...+..+.....+..+..++.+.|+++.|...|+.+....... ...++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4455566777788888888888888877653322223456667888888888888888888887653221 24567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 002814 235 ISAYGRSGYCQEAISVFNSMKRYN 258 (877)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~g 258 (877)
..++.+.|+.++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 778888888888888888887754
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.9e-05 Score=50.13 Aligned_cols=33 Identities=55% Similarity=0.863 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 002814 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD 403 (877)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 403 (877)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555554444
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0014 Score=70.28 Aligned_cols=124 Identities=14% Similarity=0.155 Sum_probs=77.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002814 407 YNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK 486 (877)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 486 (877)
..+|+..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++++.++. .+-|...+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 3444555555666777777777766543 33 2334556666666666777777766654 23345555555566667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 487 GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 487 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
.++++.|+++.+++.+.. +-+-.+|..|..+|.+.|++++|+..++.+-
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777776653 2244577777777777777777777776664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.66 E-value=6.5e-05 Score=49.57 Aligned_cols=33 Identities=39% Similarity=0.699 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 002814 510 VLYSALIDALCKNGLVESAVSLLDEMTKEGIRP 542 (877)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 542 (877)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666655
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0013 Score=60.85 Aligned_cols=118 Identities=17% Similarity=0.099 Sum_probs=50.8
Q ss_pred cCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHH
Q 002814 169 RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT--VYAFSALISAYGRSGYCQE 246 (877)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~ 246 (877)
.+++..+...++.+.......+-.....-.+...+...|++++|...|+.+......++ ..+...|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555555555544322111112222334445555555555555555554432221 1233334444555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 002814 247 AISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDD 289 (877)
Q Consensus 247 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~ 289 (877)
|+..++...... .....+....+++.+.| +.++|...|++
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g-~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQG-DYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 555554432211 12223334444455555 55555555443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00013 Score=48.19 Aligned_cols=32 Identities=31% Similarity=0.617 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 002814 230 AFSALISAYGRSGYCQEAISVFNSMKRYNLKP 261 (877)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 261 (877)
+|+.+|++|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55555555555555555555555555555544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.027 Score=56.99 Aligned_cols=63 Identities=13% Similarity=0.108 Sum_probs=36.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002814 161 FLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEG 223 (877)
Q Consensus 161 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 223 (877)
.....+.+.|++++|++.|+.++...+..+......-.++.++.+.+++++|...|++.++..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 344455566777777777777666543322222223445566666677777777776666653
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0018 Score=69.78 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=78.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 002814 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG 242 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 242 (877)
...+...|++++|++.|..++... +.+..++..+..+|.+.|++++|+..+++++..... +..+|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~---P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD---PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 455667888999999999988875 455667888888888899999999999888886543 6778888888888889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 002814 243 YCQEAISVFNSMKRYNLKPNLVTYNAVI 270 (877)
Q Consensus 243 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll 270 (877)
++++|+..|++..+. .|+.......+
T Consensus 85 ~~~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 999999998888874 35444443333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0011 Score=71.31 Aligned_cols=90 Identities=10% Similarity=0.011 Sum_probs=59.1
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhh
Q 002814 653 NACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRG 731 (877)
Q Consensus 653 ~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 731 (877)
..+...|++++|.++|+++++.+|.+..+..++...+ ..|++++|+..++++++++| .+...|..++.+|..+|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHH
Confidence 3444556777777777777766666665555443333 55677777777777777777 556667777777777777777
Q ss_pred HHHHHHHhhhhh
Q 002814 732 AQLVVLEGKRRQ 743 (877)
Q Consensus 732 A~~~~~~~~~~~ 743 (877)
|...+.+++...
T Consensus 89 A~~~~~~al~l~ 100 (356)
T PLN03088 89 AKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHhC
Confidence 777777666543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.011 Score=61.79 Aligned_cols=151 Identities=13% Similarity=0.190 Sum_probs=81.5
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc-CChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhcc
Q 002814 518 ALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRS-ATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGR 596 (877)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (877)
.|...|++..|-+++.++ ...|... |++++|++.+.++++.+.....-. ....
T Consensus 103 ~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~-----------~a~~ 156 (282)
T PF14938_consen 103 IYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPH-----------SAAE 156 (282)
T ss_dssp HHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HH-----------HHHH
T ss_pred HHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChh-----------hHHH
Confidence 456666666665555544 4466666 889999999988888755432000 0012
Q ss_pred chhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHcCCCHHHHHHHHHH
Q 002814 597 TDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIK-----PNVV-TFSAILNACSRCNSFEDASMLLEE 670 (877)
Q Consensus 597 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~-----Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~ 670 (877)
++..+..++.+ .+++++|+++|++....-.. .+.. .|...+-++-..|+...|.+.|++
T Consensus 157 ~~~~~A~l~~~---------------l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 157 CLLKAADLYAR---------------LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp HHHHHHHHHHH---------------TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22233333332 23899999999998764322 2222 122223345567899999999999
Q ss_pred HHhcCCc-----chhHHHHHhhccccc---hHHHHHHHHHHHhhcCC
Q 002814 671 LRLFDNQ-----VYGVAHGLLMGYRDN---IWVQALSLFDEVKLMDS 709 (877)
Q Consensus 671 ~~~~~~~-----~~~~~~~l~~~~~~~---~~~~A~~~~~~~~~~~~ 709 (877)
....+|. .+.++.+++.++..+ .+.+|+.-|+++.++|+
T Consensus 222 ~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 222 YCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 8876653 233444555554332 45566666665555544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00091 Score=56.15 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=73.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhc
Q 002814 648 FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHF 726 (877)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 726 (877)
+..++..+...|++++|.+.|+.+.+..+....+...+...+ ..+++++|.+.++++....+ .+...+..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHH
Confidence 455677777889999999999998887777654444443333 56889999999999988888 5567888999999999
Q ss_pred CchhhHHHHHHHhhh
Q 002814 727 GQKRGAQLVVLEGKR 741 (877)
Q Consensus 727 g~~~~A~~~~~~~~~ 741 (877)
|++++|..++..+..
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 999999988877653
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0012 Score=65.80 Aligned_cols=104 Identities=19% Similarity=0.227 Sum_probs=78.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 002814 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG 242 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 242 (877)
...+.+.++|++|+..|..++... |.++..|..-..+|.+.|.++.|++-.+.++..+.. ...+|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~---P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD---PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccC
Confidence 445667788888888888888875 566677888888888888888888888888775422 3668888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 002814 243 YCQEAISVFNSMKRYNLKPNLVTYNAVIDA 272 (877)
Q Consensus 243 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 272 (877)
++++|++.|.+.++ +.|+..+|-.=|..
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 88888888888876 56776666554443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0025 Score=68.60 Aligned_cols=121 Identities=12% Similarity=0.105 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHH
Q 002814 297 PDRITFNSLLAVCSRGGLWEAARNLFNEMVHR--GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYST 374 (877)
Q Consensus 297 p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 374 (877)
........+++.+....+++++..++.+.... ....-..|..++|+.|.+.|..++++++++.=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34555555566665556666666666665543 1111223344666666666666666666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 375 MIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKL 417 (877)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 417 (877)
||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666666665555555555555555544444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.21 Score=55.28 Aligned_cols=107 Identities=12% Similarity=0.187 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHH
Q 002814 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGY 379 (877)
Q Consensus 300 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 379 (877)
..|+.+...++....+++|.+.|..-.. -...+.+|.+..++++-..+...+.+ |....-.|.+++
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf 862 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHH
Confidence 3455555555555556665555543221 12244455555555554444444433 344445556666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002814 380 AKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKE 429 (877)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 429 (877)
...|.-++|.+.|-+.- .| ...+..|...+++.+|.++-++
T Consensus 863 ~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666665553321 11 1234455555666666655444
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.002 Score=69.38 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002814 401 GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS--GIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYS 478 (877)
Q Consensus 401 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 478 (877)
+.+.+.+..+++.+....+++++..++.+.... ....-..|..+++..|.+.|..++++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 444455555555555555555555555555433 111112333455555666666666666655555555556666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 479 TLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (877)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 522 (877)
.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666665555555444444444444444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.024 Score=59.15 Aligned_cols=172 Identities=14% Similarity=0.195 Sum_probs=80.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCC---ChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKN---DQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 234 (877)
.|......|...++|++|.+.|.++........ .....|...+.+|.+. ++++|.+.++++.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~-------------- 101 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI-------------- 101 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH--------------
Confidence 455566677777888888888877654322111 1122333333333333 5555555544443
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHH
Q 002814 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG-GVDFKHVVEIFDDMLRN----GVQ-PDRITFNSLLAV 308 (877)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~~a~~~~~~m~~~----g~~-p~~~t~~~ll~~ 308 (877)
..|...|++..|-.++.++-+ .|-.. | ++++|++.|++.... |-. --..++..+...
T Consensus 102 -~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~-d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 102 -EIYREAGRFSQAAKCLKELAE---------------IYEEQLG-DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp -HHHHHCT-HHHHHHHHHHHHH---------------HHCCTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred -HHHHhcCcHHHHHHHHHHHHH---------------HHHHHcC-CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 455666666666555554432 34444 5 666777666666532 100 001234445555
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCC-----HH-HHHHHHHHHHHcCCHHHHHHHHHHch
Q 002814 309 CSRGGLWEAARNLFNEMVHRGIDQD-----IF-TYNTLLDAICKGAQMDLAFEIMAEMP 361 (877)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g~~~~-----~~-~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (877)
+.+.|++++|.++|+++...-...+ +. .+...+-++...|+...|.+.|++..
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666666666554321111 11 11222223444555555555555544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0028 Score=53.02 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=8.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 002814 410 VLSIYAKLGRFEEALLVCKEM 430 (877)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~m 430 (877)
+...+...|++++|.+.++..
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333443333333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0079 Score=57.54 Aligned_cols=90 Identities=23% Similarity=0.216 Sum_probs=53.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 237 (877)
.+..+...+...|++++|+..|+.++......+.....+..+..++.+.|++++|...++++++.... +...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 34445566666777777777777776554322222345666666677777777777777776664322 45555555666
Q ss_pred HHhcCCHHHHH
Q 002814 238 YGRSGYCQEAI 248 (877)
Q Consensus 238 ~~~~g~~~~A~ 248 (877)
|...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 66666544433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0071 Score=53.12 Aligned_cols=109 Identities=22% Similarity=0.135 Sum_probs=74.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHH
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISAYG 239 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~ 239 (877)
+...+-..|+.++|+.+|+.++..+.........+..+...|...|++++|..++++.....+. .+......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 4556667888999999999888876544444557777888888899999999999888765322 12223333444667
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 002814 240 RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274 (877)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 274 (877)
..|+.++|++++-.... ++...|.--|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 78888888888876654 34446666555554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00017 Score=46.34 Aligned_cols=29 Identities=41% Similarity=0.778 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 002814 511 LYSALIDALCKNGLVESAVSLLDEMTKEG 539 (877)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 539 (877)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0052 Score=63.28 Aligned_cols=122 Identities=12% Similarity=-0.023 Sum_probs=77.5
Q ss_pred hhhhHhHHHHHHHHHHH----HHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHH----hcCCcchhH--HHHHhhc
Q 002814 620 NRCRQEILCILGVFQKM----HKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELR----LFDNQVYGV--AHGLLMG 688 (877)
Q Consensus 620 ~~~~~~~~~A~~~~~~m----~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~----~~~~~~~~~--~~~l~~~ 688 (877)
+...|+++.|+..-+.- ++.|-+. ....+..|.+++.-.|+++.|.+.|+... ++....... .+.+...
T Consensus 205 yYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNt 284 (639)
T KOG1130|consen 205 YYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNT 284 (639)
T ss_pred eeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhH
Confidence 44455777777654432 2344333 33468889999999999999999998753 333332222 1222222
Q ss_pred c-ccchHHHHHHHHHHHhhc-----CCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhh
Q 002814 689 Y-RDNIWVQALSLFDEVKLM-----DSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (877)
Q Consensus 689 ~-~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (877)
| -...+++|+.++.+-+.+ +.......|.+|++++...|..++|..+....++
T Consensus 285 ytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 285 YTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2 245678888888774431 1112356788999999999999999887765544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.017 Score=65.08 Aligned_cols=63 Identities=13% Similarity=0.108 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Q 002814 228 VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN 293 (877)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~ 293 (877)
..+|.++.-.+...|++++|...|++....+ |+...|..+...+...| +.++|.+.|++..+.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G-~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKG-DNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Confidence 3444444444444455555555555555432 44455555555555555 555555555555443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0046 Score=58.91 Aligned_cols=36 Identities=28% Similarity=0.462 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 002814 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (877)
Q Consensus 279 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 314 (877)
+-+-|++++++|...|+-||..|+..|++.+++.+.
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 346677888888888888888888888887766553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0056 Score=54.27 Aligned_cols=16 Identities=13% Similarity=0.358 Sum_probs=5.8
Q ss_pred HHcCCHHHHHHHHHHH
Q 002814 450 GKQGKYDEVRRMFEQM 465 (877)
Q Consensus 450 ~~~g~~~~A~~~~~~m 465 (877)
.+.|+.++|.+.++++
T Consensus 87 ~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 87 QELGDKEKAKATLQQV 102 (119)
T ss_pred HHhCChHHHHHHHHHH
Confidence 3333333333333333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0007 Score=55.86 Aligned_cols=82 Identities=15% Similarity=0.184 Sum_probs=55.8
Q ss_pred cCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002814 169 RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAI 248 (877)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 248 (877)
.|+++.|+.+|+.++......+ +...+..+..+|.+.|++++|..+++. .+.+. .+....-.+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 5788888888888887764211 334555578888888888888888877 33222 23445555677888888888888
Q ss_pred HHHHH
Q 002814 249 SVFNS 253 (877)
Q Consensus 249 ~~~~~ 253 (877)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88875
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0032 Score=53.00 Aligned_cols=39 Identities=10% Similarity=0.364 Sum_probs=19.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH
Q 002814 447 GGYGKQGKYDEVRRMFEQMKADCV-SPNLLTYSTLIDVYS 485 (877)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~ 485 (877)
.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.+
T Consensus 33 ~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~ 72 (120)
T PF08579_consen 33 NSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIA 72 (120)
T ss_pred HHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 333334555555555555555555 455555555555444
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00022 Score=45.83 Aligned_cols=26 Identities=42% Similarity=0.942 Sum_probs=10.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKF 397 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (877)
|+++|++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0053 Score=51.74 Aligned_cols=88 Identities=22% Similarity=0.374 Sum_probs=68.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchh
Q 002814 512 YSALIDALCKNGLVESAVSLLDEMTKEGI-RPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKD 590 (877)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 590 (877)
-...|..+...|++.....+|+.++..|+ -|+..+|+.++.+.++..--..+++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie------------------------- 82 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIE------------------------- 82 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHH-------------------------
Confidence 34556667777999999999999999999 8999999999988765432111111
Q ss_pred hhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 002814 591 VQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSR 657 (877)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~ 657 (877)
+ ++-+.+.+|+.|+..+++|+..||+.++..+.+
T Consensus 83 --------~-------------------------kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 83 --------N-------------------------KLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred --------H-------------------------HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 0 233477799999999999999999999988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0008 Score=53.04 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=28.7
Q ss_pred cchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcC-chhhHHHHHHHhhh
Q 002814 691 DNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFG-QKRGAQLVVLEGKR 741 (877)
Q Consensus 691 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 741 (877)
.+++++|+..|+++++.+| .+..+|..++.+|...| ++++|.+.++++++
T Consensus 16 ~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp TTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4445555555555555555 45556666666666666 56666666665544
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0054 Score=63.67 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK-GGLYKEAMQIFREFKQAGLKADVVLYSALIDAL 519 (877)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 519 (877)
+|..++...-+.+..+.|+.+|.+..+.+ ..+...|......-.. .++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555555555555555332 1122233322222122 34444455555555543 233555555555555
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhhcCChhhhHHHHHHHhhhhhh
Q 002814 520 CKNGLVESAVSLLDEMTKEGIRPNV---VTYNSIIDAFGRSATTECTVDDVERDLGKQKE 576 (877)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (877)
.+.|+.+.|..+|++.+.. +.++. ..|...++.=.+.|+++....+..++.+..++
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 5556666666666655543 22221 25555555555566666555555555555544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0046 Score=56.30 Aligned_cols=92 Identities=13% Similarity=-0.056 Sum_probs=65.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002814 161 FLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240 (877)
Q Consensus 161 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 240 (877)
.+...+.+.|++++|.++|+.+...+ +.+...|..|.-++...|++.+|+..|..+....+. +...+..+..++..
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D---p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~ 115 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD---AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 34555667777777777777777665 344556677777777777777777777777776543 66677777777777
Q ss_pred cCCHHHHHHHHHHHHh
Q 002814 241 SGYCQEAISVFNSMKR 256 (877)
Q Consensus 241 ~g~~~~A~~~~~~m~~ 256 (877)
.|+.+.|++.|+....
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777776654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00055 Score=56.47 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=30.4
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHh
Q 002814 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEG 739 (877)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 739 (877)
+.|++++|..++++ .+.++ .+......++.+|.++|++++|.++++++
T Consensus 37 ~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 37 QQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 44555555555555 34444 34444556688999999999999888753
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.027 Score=55.49 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEG 223 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 223 (877)
+.+-.....+.+.|++.+|++.|+.+...-+..+-...+.-.++.++-+.|+++.|...+++.++.-
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3344456667788999999999999988766656666677778888889999999999999887753
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0059 Score=58.21 Aligned_cols=105 Identities=21% Similarity=0.349 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 002814 401 GLDRVSYNTVLSIYAKL-----GRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLL 475 (877)
Q Consensus 401 ~pd~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 475 (877)
..|..+|..+++.|.+. |.++-....++.|.+-|+..|..+|+.|++.+=+ |.+- -..+|+.+.-.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h------- 114 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH------- 114 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc-------
Confidence 44666666666666543 5666666777777777777788888877777654 2221 11222222111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002814 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL 524 (877)
Q Consensus 476 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 524 (877)
.-.+-+-|++++++|...|+.||..++..|+..+.+.+.
T Consensus 115 ----------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 ----------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 112345566677777777777777777777776655543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0062 Score=62.74 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=54.3
Q ss_pred HHHHccCCHHHHHHHHHHHHHccccC-CChHHHHHHHHHHHHhcCChHHHHHHHHHHH--Hc--CC-CCCHHHHHHHHHH
Q 002814 164 RELGNRGEWSKAIQCFAFAVKREERK-NDQGKLASAMISILGRLGKVDLAKNIFETAL--NE--GY-GNTVYAFSALISA 237 (877)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~--g~-~~~~~~~~~li~~ 237 (877)
..+++.|+.+..+.+|+.+++.|... ..-..+|+.|.++|.-.+++++|.+++..=+ .+ |- .-...+...|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 45788999999999999999887321 1112356777788888888999888764321 11 10 0122333445555
Q ss_pred HHhcCCHHHHHHH
Q 002814 238 YGRSGYCQEAISV 250 (877)
Q Consensus 238 ~~~~g~~~~A~~~ 250 (877)
+--.|.+++|+.+
T Consensus 105 lKv~G~fdeA~~c 117 (639)
T KOG1130|consen 105 LKVKGAFDEALTC 117 (639)
T ss_pred hhhhcccchHHHH
Confidence 5566677766544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.005 Score=63.92 Aligned_cols=143 Identities=15% Similarity=0.107 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 405 VSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK-QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDV 483 (877)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 483 (877)
.+|..++...-+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356667777777777788888887777543 2233444444444233 45556688888877765 45567777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 484 YSKGGLYKEAMQIFREFKQAGLKAD---VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (877)
Q Consensus 484 ~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 552 (877)
+.+.++.+.|..+|++.+.. +..+ ...|...+..-.+.|+.+.+.++.+++.+. -|+...+..+++
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 78888888888888887654 2222 248888888888899999999999998874 344333333443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.021 Score=54.54 Aligned_cols=88 Identities=20% Similarity=0.158 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD--RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGG 448 (877)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 448 (877)
.+..+...|...|++++|+..|++..+....+. ...+..+...+.+.|++++|+..+++..+.. +.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444455555555555555555544321111 2345555555556666666666665555443 2334445555555
Q ss_pred HHHcCCHHHHH
Q 002814 449 YGKQGKYDEVR 459 (877)
Q Consensus 449 ~~~~g~~~~A~ 459 (877)
|...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 55555544333
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.44 Score=50.14 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002814 407 YNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK 486 (877)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 486 (877)
.+..|.-+...|+...|.++-.+.. .||..-|...+.+|++.+++++-.++... + -++.-|...+.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHH
Confidence 3444455555666666665544443 45666666666666666666655554321 1 133556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002814 487 GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLL 532 (877)
Q Consensus 487 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (877)
.|+..+|..+..++ .+..-+..|.++|++.+|.+.-
T Consensus 250 ~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 250 YGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 66666666555441 1234455566666666665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.17 Score=51.13 Aligned_cols=56 Identities=20% Similarity=0.136 Sum_probs=27.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 375 MIDGYAKAGRLDDALNMFSEMKFL--GIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (877)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 430 (877)
+.+.|.+.|.+..|+.-++.+.+. +.+........++.+|.+.|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344455555555555555555543 11222334444555555555555555544433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.011 Score=56.33 Aligned_cols=95 Identities=18% Similarity=0.095 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
..+..+...+...|++++|+..|..++.....+.....++..+..++...|++++|++.++.+..... .....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHH
Confidence 34555677777889999999999988876433333345778888889999999999999988887532 24556666666
Q ss_pred HHH-------hcCCHHHHHHHHH
Q 002814 237 AYG-------RSGYCQEAISVFN 252 (877)
Q Consensus 237 ~~~-------~~g~~~~A~~~~~ 252 (877)
.+. +.|+++.|+..++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 666 5555554444433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.27 Score=54.55 Aligned_cols=130 Identities=10% Similarity=0.063 Sum_probs=64.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHcCCCCHH
Q 002814 204 GRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLK--PNLVTYNAVIDACGKGGVDFK 281 (877)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~ 281 (877)
+--|+|++|+++|-+|-+++ .-|..+.+.|++-...++++.--. +.. --..+|+.+...++... .++
T Consensus 745 ~~~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~-~We 813 (1189)
T KOG2041|consen 745 AFYGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMM-EWE 813 (1189)
T ss_pred hhhcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHH-HHH
Confidence 33577888888887775542 134455566666555555543110 000 01345666666666555 566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 282 HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMA 358 (877)
Q Consensus 282 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (877)
+|.+.|..-.. . ...+.++.+..++++-+.+-..+. .|....-.+.+++.+.|.-++|.+.|-
T Consensus 814 ~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 814 EAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHH
Confidence 66666654221 1 123444444444444333333222 234444555555555565555555543
|
|
| >PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0014 Score=53.69 Aligned_cols=71 Identities=34% Similarity=0.423 Sum_probs=49.1
Q ss_pred chhhccchHHHHHHHHHHHHHHHHhhhccCCCCCceeEEeeccccccccCchhhHHHHHHHHhcCCCCccc---------
Q 002814 754 LDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAPFWV--------- 824 (877)
Q Consensus 754 ~dl~~~s~g~a~~~~~~w~~~~~~~~~~~~~~p~~~~i~~g~g~h~~~~~~~~~~~~i~~~l~~l~~pf~~--------- 824 (877)
+|||.++...|...+..++...+.. --..+.|+||.|.||. + ..++++|...|++ +..+..
T Consensus 1 iDLHG~~~~eA~~~l~~~l~~~~~~------~~~~~~II~G~G~hS~--~-g~Lk~~V~~~L~~-~~~~~~v~~~~~~~~ 70 (83)
T PF01713_consen 1 IDLHGLTVEEALRALEEFLDEARQR------GIRELRIITGKGNHSK--G-GVLKRAVRRWLEE-GYQYEEVLAYRDAEP 70 (83)
T ss_dssp EE-TTS-HHHHHHHHHHHHHHHHHT------THSEEEEE--STCTCC--T-SHHHHHHHHHHHH-THCCTTEEEEEE--C
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHc------CCCEEEEEeccCCCCC--C-CcHHHHHHHHHHh-hhccchhheeeecCC
Confidence 6999999999999999998776533 2267889999999984 2 2499999999987 533332
Q ss_pred ccCCCceEEe
Q 002814 825 ANCNLGRFIS 834 (877)
Q Consensus 825 ~~~~~g~~~~ 834 (877)
...|.|.++.
T Consensus 71 ~~g~~G~~~V 80 (83)
T PF01713_consen 71 EDGNSGATIV 80 (83)
T ss_dssp CCTGGGEEEE
T ss_pred CCCCCeEEEE
Confidence 2346777653
|
It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.04 Score=62.19 Aligned_cols=61 Identities=16% Similarity=0.004 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 475 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
..|..+...+...|++++|...++++++.+ |+...|..+...+...|+.++|.+.|++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444555555555555555543 3455555555555555555555555555544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.022 Score=54.23 Aligned_cols=79 Identities=16% Similarity=0.004 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLGIGL--DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGG 448 (877)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 448 (877)
.|..+...+...|++++|+..|++.......+ ...++..+...|...|++++|+..+++..... +....+++.+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 34444455555555555555555554432111 12345555555555566666666655555432 2233344444444
Q ss_pred HH
Q 002814 449 YG 450 (877)
Q Consensus 449 ~~ 450 (877)
|.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 44
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.51 Score=46.33 Aligned_cols=61 Identities=7% Similarity=-0.012 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 002814 302 FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (877)
Q Consensus 302 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (877)
.+.++......|.+.-...++.+.++...+.+......|+++-.+.|+.+.|...|++..+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555566666666666666655455555666666666666666666666665543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.33 Score=47.53 Aligned_cols=143 Identities=12% Similarity=0.086 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCCHHHHH
Q 002814 264 VTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG-----IDQDIFTYN 338 (877)
Q Consensus 264 ~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g-----~~~~~~~~~ 338 (877)
..-+.++..+...+ ++.-...++.+.++...+.+......|+++-.+.|+.+.|...|++..+.. +.-+..+.-
T Consensus 178 ~Vmy~~~~~llG~k-Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMK-EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcch-hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 34566677777777 888889999999988777788888999999999999999999999776542 222333333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002814 339 TLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTV 410 (877)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 410 (877)
.....|.-.+++.+|...|+++...+.. |.+.-|...-+..-.|+..+|++.++.|+.. .|...+-+++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 4445566678888888888888876543 6666676666666678889999999988876 4555444433
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.82 Score=48.38 Aligned_cols=90 Identities=8% Similarity=-0.020 Sum_probs=66.8
Q ss_pred HhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 002814 147 KKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGN 226 (877)
Q Consensus 147 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 226 (877)
+.+...+.+.-.|-.++..|..++..++.+++++++...- |--..++..-+..-...+++...+.+|.+.+... .
T Consensus 33 erIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf---p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l 107 (660)
T COG5107 33 ERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF---PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--L 107 (660)
T ss_pred HHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC---ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--c
Confidence 3444555566678889999999999999999999987653 3333467777777777789999999999988754 3
Q ss_pred CHHHHHHHHHHHHhc
Q 002814 227 TVYAFSALISAYGRS 241 (877)
Q Consensus 227 ~~~~~~~li~~~~~~ 241 (877)
++..|...+..-.+.
T Consensus 108 ~ldLW~lYl~YIRr~ 122 (660)
T COG5107 108 NLDLWMLYLEYIRRV 122 (660)
T ss_pred cHhHHHHHHHHHHhh
Confidence 577887777655443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0029 Score=49.09 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=42.0
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhh
Q 002814 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (877)
..|++++|++.|+++++.+| .+..++..+++++...|++++|..++.++.+.
T Consensus 9 ~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56778888888888888888 67888888999999999999998888877654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0092 Score=54.62 Aligned_cols=92 Identities=11% Similarity=-0.019 Sum_probs=76.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCc
Q 002814 650 AILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQ 728 (877)
Q Consensus 650 ~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 728 (877)
+...-+...|++++|..+|.-+...|+.+...+.++...+ ..+.+++|+..|.-+..++. .+.......+.+|..+|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 3444556789999999999999998988877776766555 57899999999999988887 566667778999999999
Q ss_pred hhhHHHHHHHhhhh
Q 002814 729 KRGAQLVVLEGKRR 742 (877)
Q Consensus 729 ~~~A~~~~~~~~~~ 742 (877)
.+.|...|..+.++
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999877763
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.51 Score=53.18 Aligned_cols=109 Identities=12% Similarity=0.121 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALC 520 (877)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 520 (877)
+.+--+.-+...|+..+|.++-.+.+ .||-..|-.-+.+++..+++++-.++-+.+. .+.-|.-.+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34444455666788888877766654 4677788888888888888887666554432 3567777888888
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHH
Q 002814 521 KNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVE 568 (877)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 568 (877)
+.|+.+||.+++-+.... . -...+|.+.|++.+|.+...
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHH
Confidence 888888888888766431 1 46677888888888877653
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.02 Score=57.67 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=88.1
Q ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhc--c--ccchHHHHHHHHHHHhhcCCCcchhH
Q 002814 641 IKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMG--Y--RDNIWVQALSLFDEVKLMDSSTASAF 715 (877)
Q Consensus 641 ~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~--~--~~~~~~~A~~~~~~~~~~~~~~~~~~ 715 (877)
-.| |...|.-|..+|...|+.+.|...|..+.++.+++..+.-++... + ...+-.+|..+|+++++.|| .|...
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~ira 229 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRA 229 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHH
Confidence 346 777899999999999999999999999999999988877666332 2 34467899999999999999 88999
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 716 YNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 716 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
...|+-.++..|++.+|...|..+.+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 9999999999999999999999887654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0041 Score=48.23 Aligned_cols=59 Identities=14% Similarity=0.077 Sum_probs=37.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCC
Q 002814 651 ILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 651 ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (877)
+...+...|++++|.+.|+.+++.+|.+..+...+...+ ..|++++|+..|+++++.+|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 344556667777777777777766666666655554333 56677777777777766666
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.083 Score=46.43 Aligned_cols=53 Identities=25% Similarity=0.369 Sum_probs=21.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 379 YAKAGRLDDALNMFSEMKFLGIGLD--RVSYNTVLSIYAKLGRFEEALLVCKEME 431 (877)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (877)
+-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..++++..
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444432222 1223333344444444444444444443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.029 Score=56.45 Aligned_cols=100 Identities=13% Similarity=0.070 Sum_probs=47.4
Q ss_pred ChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHH
Q 002814 191 DQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG---YCQEAISVFNSMKRYNLKPNLVTYN 267 (877)
Q Consensus 191 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~ 267 (877)
.+..-|..|...|...|+++.|...|.++.+... ++...+..+..++.... .-.++.++|+++.+.+.. |+.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 3444555555555555555555555555554422 24444444444433221 223455555555543221 333444
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC
Q 002814 268 AVIDACGKGGVDFKHVVEIFDDMLRN 293 (877)
Q Consensus 268 ~ll~~~~~~g~~~~~a~~~~~~m~~~ 293 (877)
.|...+...| ++.+|...|+.|++.
T Consensus 232 lLA~~afe~g-~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQG-DYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcc-cHHHHHHHHHHHHhc
Confidence 4444455555 555555555555554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0038 Score=48.94 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=43.4
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
..|++++|++.|+++.+.+| .+..++..|+.+|.+.|++++|..++.......
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 46788889999999888888 678888889999999999999999888766544
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.67 E-value=1.1 Score=47.17 Aligned_cols=109 Identities=20% Similarity=0.249 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYG 450 (877)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 450 (877)
+.+..|.-+...|+...|.++-++.. .||..-|-..+.+++..++|++-..+... +..+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44455666778888888888877664 57888888999999999999877765322 235577888899999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002814 451 KQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFRE 499 (877)
Q Consensus 451 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 499 (877)
+.|+..+|..+..++ .+..-+..|.+.|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999998888772 125677888999999998876543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0088 Score=47.01 Aligned_cols=63 Identities=22% Similarity=0.269 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLG-KVDLAKNIFETALN 221 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 221 (877)
+..|..+...+.+.|++++|+..|..+++.+ +.+..++..+..++.+.| ++++|++.++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555666666666666666666666664 445556666666666666 56666666666654
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0089 Score=46.79 Aligned_cols=52 Identities=21% Similarity=0.371 Sum_probs=26.9
Q ss_pred ccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 002814 168 NRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE 222 (877)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (877)
+.|++++|++.|+.++... |.+..+...++.+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN---PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455555555555555543 333444455555555555555555555555543
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.13 Score=50.53 Aligned_cols=62 Identities=19% Similarity=0.159 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 002814 196 ASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISAYGRSGYCQEAISVFNSMKRY 257 (877)
Q Consensus 196 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 257 (877)
+-..+..+...|++++|.+.|+.+...-+. -...+.-.++.++.+.|++++|+..|++..+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556677889999999999999875332 23456677888888999999999999998764
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.61 Score=43.36 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 002814 401 GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC---VSPNLLTY 477 (877)
Q Consensus 401 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~ 477 (877)
.|+...-..|..+..+.|+..+|...|++...--+.-|....-.+.++....+++.+|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 344444455555566666666666666665543344455555555555566666666666666555432 1122 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002814 478 STLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLL 532 (877)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (877)
-.+...|...|++.+|...|+..... .|+...-......+.++|+.++|..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 33445555556666666666655553 233333333334445555555544333
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.71 Score=45.72 Aligned_cols=67 Identities=13% Similarity=0.043 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEG 223 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 223 (877)
+.+-.-+....+.|+|++|.+.|+.+..+.+..+-...+...++.++-+.+++++|+..+++.+..-
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 3333334444567788888888877777665555555566666777777777777777777776653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.13 Score=56.27 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=13.5
Q ss_pred HHHHcCChHHHHHHHHHHHH
Q 002814 518 ALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~ 537 (877)
+|.+.|+-.||..+++++..
T Consensus 826 AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHhcchHHHHHHHHHhhh
Confidence 45566777777777777654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.8 Score=45.94 Aligned_cols=114 Identities=14% Similarity=0.033 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHH
Q 002814 626 ILCILGVFQKMHKLK-IKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDE 703 (877)
Q Consensus 626 ~~~A~~~~~~m~~~g-~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~ 703 (877)
.+.|..+|-+....| +.+++.++++++.-++. |+..-|.++|+--...-+++....+.++.-+ +.++-..|..+|++
T Consensus 413 l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFet 491 (660)
T COG5107 413 LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFET 491 (660)
T ss_pred HHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 345677788887777 55677788888776664 6777888888875544444433333333322 56677778888886
Q ss_pred HhhcCC-CcchhHHHHHHHHHHhcCchhhHHHHHHHhh
Q 002814 704 VKLMDS-STASAFYNALTDMLWHFGQKRGAQLVVLEGK 740 (877)
Q Consensus 704 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 740 (877)
.++.-. ..-..+|..+++--...|....+..+-+.+.
T Consensus 492 sv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 492 SVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 654211 1225678888777777888777666554443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.34 E-value=2.3 Score=47.13 Aligned_cols=429 Identities=12% Similarity=0.098 Sum_probs=211.5
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 002814 154 CGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSA 233 (877)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 233 (877)
...+.|..++..-.+....+.+..++..++..- |.-...|......=.+.|..+.+.++|++.+. +++.++..|..
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky---Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~ 118 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY---PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLS 118 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHH
Confidence 345566667766666566666677777666553 33334566666666777778888888887765 35556666666
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 234 LISAYG-RSGYCQEAISVFNSMKRY-NLK-PNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCS 310 (877)
Q Consensus 234 li~~~~-~~g~~~~A~~~~~~m~~~-g~~-p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 310 (877)
....++ ..|+.+.-.+.|+..+.. |.. -....|-..|.--...+ ++.....+|++.++. ...-|+....-|
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qk-s~k~v~~iyeRilei----P~~~~~~~f~~f- 192 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQK-SWKRVANIYERILEI----PLHQLNRHFDRF- 192 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccc-cHHHHHHHHHHHHhh----hhhHhHHHHHHH-
Confidence 655444 346666666777766642 221 13445555565555555 666666666666653 111122111111
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC----CCCCCHHHHHHHHHHHH-HcCCH
Q 002814 311 RGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK----NISPNVVTYSTMIDGYA-KAGRL 385 (877)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd~~~~~~li~~~~-~~g~~ 385 (877)
.+..+.. ++. . ....+++.++-.....+ ........+..-++.-. ..+..
T Consensus 193 ------------~~~l~~~-~~~--~----------l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l 247 (577)
T KOG1258|consen 193 ------------KQLLNQN-EEK--I----------LLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSL 247 (577)
T ss_pred ------------HHHHhcC-Chh--h----------hcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchh
Confidence 1111100 000 0 00111111111111100 00001111111111110 11222
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 386 DDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG-------IRKDAVTYNALLGGYGKQGKYDEV 458 (877)
Q Consensus 386 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------~~~~~~~~~~li~~~~~~g~~~~A 458 (877)
+++...+.+.... --.++-......+.+..|+.-++.- ..++..+|+.-++.-.+.|+.+.+
T Consensus 248 ~~~~~~l~~~~~~-----------~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~ 316 (577)
T KOG1258|consen 248 TEEKTILKRIVSI-----------HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRV 316 (577)
T ss_pred hHHHHHHHHHHHH-----------HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHH
Confidence 2232222221111 1112222233334444444433321 124567788888888889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHH
Q 002814 459 RRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDA-LCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 459 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~ 537 (877)
.-+|++..-- +.-=...|-..+.-....|+.+-|..++....+.-++ +......+-.. .-..|+++.|..+++...+
T Consensus 317 ~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 317 FILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIES 394 (577)
T ss_pred HHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 8888887542 1112344555555555558888888777776654433 32222223233 3457899999999999987
Q ss_pred CCCCCCHH-HHHHHHHHHhhcCChhhhHH---HHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHh
Q 002814 538 EGIRPNVV-TYNSIIDAFGRSATTECTVD---DVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKA 613 (877)
Q Consensus 538 ~g~~p~~~-~~~~li~~~~~~g~~~~a~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (877)
. + |+.+ .-..-+....+.|..+.+.- ++.....- ..+ .+..+...--+.++.
T Consensus 395 e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~-~~~-----------------~~i~~~l~~~~~r~~---- 450 (577)
T KOG1258|consen 395 E-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG-KEN-----------------NGILEKLYVKFARLR---- 450 (577)
T ss_pred h-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc-ccC-----------------cchhHHHHHHHHHHH----
Confidence 6 3 6654 33344555667777766652 11111100 000 011122222122211
Q ss_pred cCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 002814 614 GQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSF 661 (877)
Q Consensus 614 g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~ 661 (877)
+..+.+.+.|..++.+|.+. ..++...|..+++.+...+..
T Consensus 451 ------~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 451 ------YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred ------HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCcc
Confidence 22334667788888888772 334666688888777665543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.8 Score=42.61 Aligned_cols=125 Identities=18% Similarity=0.102 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC---CCCCHHHHH
Q 002814 297 PDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN---ISPNVVTYS 373 (877)
Q Consensus 297 p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~pd~~~~~ 373 (877)
|++..-..|..+..+.|+..+|...|++....-+.-|......+..+....+++..|...++++.+.. -.|| +.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 44444445555566666666666666665543334455555555555555566666655555554431 1112 223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 374 TMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALL 425 (877)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~ 425 (877)
.+.+.|...|+..+|...|+..... .|+...-..-...+.+.|+.+++..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 3444455555555555555555443 3333333333333444454444443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.092 Score=56.43 Aligned_cols=120 Identities=11% Similarity=0.075 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHH-HCCCCCCHHH-HHHHHHHHH---------cCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccc
Q 002814 625 EILCILGVFQKMH-KLKIKPNVVT-FSAILNACS---------RCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDN 692 (877)
Q Consensus 625 ~~~~A~~~~~~m~-~~g~~Pd~~t-~~~ll~a~~---------~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 692 (877)
..+.|+.+|.+.. ...+.|+-.. |..+..++. ......+|.++.+.+.+.|+.+..+...+.... ..+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 5667999999988 2237787554 444433332 123456788889999999999888765543321 344
Q ss_pred hHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhhch
Q 002814 693 IWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVW 745 (877)
Q Consensus 693 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 745 (877)
+.+.|..+|+++..++| +.+..|...++++...|+.++|.+.++++.+..-.
T Consensus 353 ~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 353 QAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred chhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 59999999999999999 78899999999999999999999999998776543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.016 Score=46.79 Aligned_cols=69 Identities=10% Similarity=0.122 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhccccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHh
Q 002814 646 VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWH 725 (877)
Q Consensus 646 ~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 725 (877)
.+|+.+..+|...|++++|..+|+++... -...+ ...+ .-..+++.++.+|..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~-------------------------~~~~-~~a~~~~~lg~~~~~ 58 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLG-------------------------DDHP-DTANTLNNLGECYYR 58 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTT-------------------------THHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHC-------------------------CCCH-HHHHHHHHHHHHHHH
Confidence 35788889999999999999999887632 11100 0001 125678899999999
Q ss_pred cCchhhHHHHHHHhhh
Q 002814 726 FGQKRGAQLVVLEGKR 741 (877)
Q Consensus 726 ~g~~~~A~~~~~~~~~ 741 (877)
.|++++|.++++++.+
T Consensus 59 ~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 59 LGDYEEALEYYQKALD 74 (78)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999988764
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.089 Score=53.66 Aligned_cols=90 Identities=11% Similarity=0.024 Sum_probs=42.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhhcC
Q 002814 485 SKGGLYKEAMQIFREFKQAGLKAD--VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN----VVTYNSIIDAFGRSA 558 (877)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g 558 (877)
.+.|++++|...|+.+++...... ...+..+..+|...|++++|...|+.+.+. .|+ ...+..+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHHcC
Confidence 334555555555555544321110 123444455555555555555555555532 111 223333444455555
Q ss_pred ChhhhHHHHHHHhhhhhh
Q 002814 559 TTECTVDDVERDLGKQKE 576 (877)
Q Consensus 559 ~~~~a~~~~~~~l~~~~~ 576 (877)
+.++|+..++++++.+|+
T Consensus 232 ~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred CHHHHHHHHHHHHHHCcC
Confidence 555555555555555554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.086 Score=53.80 Aligned_cols=90 Identities=17% Similarity=0.092 Sum_probs=47.2
Q ss_pred HccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCH
Q 002814 167 GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISAYGRSGYC 244 (877)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~ 244 (877)
.+.|++++|+..|+..++..+.......++..+..+|...|++++|...|+.+++.-+. ....++-.++..+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 34466666666666666554322222334555556666666666666666666543211 1233444444555556666
Q ss_pred HHHHHHHHHHHh
Q 002814 245 QEAISVFNSMKR 256 (877)
Q Consensus 245 ~~A~~~~~~m~~ 256 (877)
++|..+|+++.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.74 Score=44.79 Aligned_cols=205 Identities=12% Similarity=0.079 Sum_probs=106.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 237 (877)
.|..-..+|....++++|...+..+.+-.. .+... +-....++.|.-+..++.+. +--+..|+--+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yE---nnrsl-------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYE---NNRSL-------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHH---hcccH-------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 455556677788888888888877764321 11111 11223345555555555442 1124456666678
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHhC
Q 002814 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN---G--VQPDRITFNSLLAVCSRG 312 (877)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~---g--~~p~~~t~~~ll~~~~~~ 312 (877)
|..+|..+-|-..+++.-+ ..+.- +.++|+++|++.... + .+.-...+..+.+++.+.
T Consensus 101 Y~E~GspdtAAmaleKAak----------------~lenv-~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAK----------------ALENV-KPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHhCCcchHHHHHHHHHH----------------HhhcC-CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 8899998888877777653 11222 455666666555431 0 000112233444556666
Q ss_pred CCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHchhC---CCCCCHHHHHHHHHHHHHcCC
Q 002814 313 GLWEAARNLFNEMVHR----GIDQD-IFTYNTLLDAICKGAQMDLAFEIMAEMPAK---NISPNVVTYSTMIDGYAKAGR 384 (877)
Q Consensus 313 g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~pd~~~~~~li~~~~~~g~ 384 (877)
..+++|-..|.+-... .--++ -..|-+.|-.|.-..++..|...+++--+. .-.-|..+...|+.+| ..|+
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD 242 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD 242 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence 6666665554432211 00111 123444555555666777777777763322 1122445556666655 3455
Q ss_pred HHHHHHHH
Q 002814 385 LDDALNMF 392 (877)
Q Consensus 385 ~~~A~~~~ 392 (877)
.+++.+++
T Consensus 243 ~E~~~kvl 250 (308)
T KOG1585|consen 243 IEEIKKVL 250 (308)
T ss_pred HHHHHHHH
Confidence 55544443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0038 Score=40.84 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=29.4
Q ss_pred HHHHhhcCCCcchhHHHHHHHHHHhcCchhhHH
Q 002814 701 FDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQ 733 (877)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 733 (877)
++++++++| .+...|+.|+.+|...|++++|+
T Consensus 2 y~kAie~~P-~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP-NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC-CCHHHHHHHHHHHHHCcCHHhhc
Confidence 678889999 88999999999999999999986
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=1.8 Score=42.89 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=54.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 002814 448 GYGKQGKYDEVRRMFEQMKADCV--SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLV 525 (877)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 525 (877)
.+...|+++.|...|.+...... ......+......+...++.+.+...+..+...........+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 34445555555555554433110 0122222223333444555555555555554432110234455555555555555
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCChhhhHHHHHHHhhh
Q 002814 526 ESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (877)
Q Consensus 526 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~l~~ 573 (877)
++|...+...... .|+ ...+..+...+...+..+++...+.+.+..
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5666555555543 222 223333333333444455555555444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.91 Score=50.11 Aligned_cols=100 Identities=16% Similarity=0.277 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (877)
Q Consensus 368 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 447 (877)
+..+...+...+.+...+.-|.++|..|-.. ..++......+++++|..+-++.-+. .+| +|.-..+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHH
Confidence 4444555555555666677777777766422 34566677778888887776655432 233 3334445
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 448 GYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
.++...++++|.+. |.+.|+-.+|..+++++..
T Consensus 813 wLAE~DrFeEAqkA----------------------fhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKA----------------------FHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HhhhhhhHHHHHHH----------------------HHHhcchHHHHHHHHHhhh
Confidence 55556666665543 4456777888888877754
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.77 E-value=3.1 Score=43.52 Aligned_cols=250 Identities=14% Similarity=0.065 Sum_probs=128.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 002814 312 GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDA----ICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDD 387 (877)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 387 (877)
.|+++.|.+-|+.|.. |..+-..=+.+ .-+.|..+.|.+.-++.-..-.. -...+...+...|..|+++.
T Consensus 133 eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 133 EGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDG 206 (531)
T ss_pred cCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHH
Confidence 4666666666666654 22222221221 23455555555555554433211 23455566666666666666
Q ss_pred HHHHHHHHHHCC-CCCCHHH--HHHHHHHH--H-HcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHH
Q 002814 388 ALNMFSEMKFLG-IGLDRVS--YNTVLSIY--A-KLGRFEEALLVCKEMESSGIRKDAVTY-NALLGGYGKQGKYDEVRR 460 (877)
Q Consensus 388 A~~~~~~m~~~g-~~pd~~~--~~~li~~~--~-~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~ 460 (877)
|+++++.-+... +.+|..- -..|+.+- . -.-+...|...-.+..+. .||..-- ..-..+|.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhh
Confidence 666666544321 2222211 11122111 1 112344444444444333 4453322 223456778888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 002814 461 MFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAM-QIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG 539 (877)
Q Consensus 461 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 539 (877)
+++.+-+.. |....+. +..+.+.|+.-... +-.+.+.... +.+..+...+..+-...|++..|..--+....
T Consensus 285 ilE~aWK~e--PHP~ia~--lY~~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-- 357 (531)
T COG3898 285 ILETAWKAE--PHPDIAL--LYVRARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAR-- 357 (531)
T ss_pred HHHHHHhcC--CChHHHH--HHHHhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--
Confidence 888887763 3433332 22334455432211 1111222211 22456666677777778888777766665554
Q ss_pred CCCCHHHHHHHHHHH-hhcCChhhhHHHHHHHhhhhhh
Q 002814 540 IRPNVVTYNSIIDAF-GRSATTECTVDDVERDLGKQKE 576 (877)
Q Consensus 540 ~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~~l~~~~~ 576 (877)
..|....|..|.+.- +..|+-.++.+.+.++++..-+
T Consensus 358 ~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 358 EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 467777777777765 4458877887777777765444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.038 Score=44.60 Aligned_cols=65 Identities=23% Similarity=0.348 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccc----cCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREE----RKNDQGKLASAMISILGRLGKVDLAKNIFETALN 221 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (877)
..+..+...|...|++++|+..|++++.... ..+....++..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455677777788888888888877775411 1112244566677777777777777777776653
|
... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.33 Score=42.14 Aligned_cols=93 Identities=18% Similarity=0.123 Sum_probs=73.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHH
Q 002814 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVY---AFSALISAYG 239 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~---~~~~li~~~~ 239 (877)
.-+++..|+++.|++.|..++..- |....+|+.-..++.-.|+.++|..=++++++..-..+-. +|..-...|.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~---P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA---PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc---ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 345778899999999999998773 5667799999999999999999999999998753332333 3333445677
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 002814 240 RSGYCQEAISVFNSMKRYN 258 (877)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~g 258 (877)
..|+.+.|..-|+...+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 8899999999999887766
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.40 E-value=3.3 Score=44.13 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (877)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (877)
|-..+.+++.++.-.|+.++|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3444455555555555555555555555543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.06 Score=42.71 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=35.5
Q ss_pred HHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002814 165 ELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEG 223 (877)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 223 (877)
.+.+.++|++|+++++.++..+ |.+...+.....++.+.|++++|.+.|+.+++.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD---PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC---cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4556666677777776666664 3344556666666666666666666666666553
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.042 Score=58.86 Aligned_cols=100 Identities=7% Similarity=-0.125 Sum_probs=70.8
Q ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchh---HHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhH
Q 002814 641 IKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYG---VAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAF 715 (877)
Q Consensus 641 ~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~---~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~ 715 (877)
..| +...++.+..+|.+.|++++|...|+++++++|++.. ..+++...| ..|+.++|+..++++++... . .
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn---~-~ 145 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN---L-K 145 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc---h-h
Confidence 456 4567999999999999999999999999999998764 366776665 68999999999999998632 1 2
Q ss_pred HHHHHH--HHHhcCchhhHHHHHHHhhhhhc
Q 002814 716 YNALTD--MLWHFGQKRGAQLVVLEGKRRQV 744 (877)
Q Consensus 716 ~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~ 744 (877)
|.++.. .+....+..+..+++.+...-|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 322111 12233444566666665555443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.11 Score=41.13 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=23.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 414 YAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (877)
Q Consensus 414 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (877)
|.+.+++++|+++++.+...+ +.+...|......|.+.|++++|.+.|++..+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444433 33344444444444444444444444444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.12 Score=47.89 Aligned_cols=72 Identities=22% Similarity=0.322 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 002814 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK-----EGIRPNVVTY 547 (877)
Q Consensus 475 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 547 (877)
.....++..+...|++++|..+.+.+.... +.|...|..+|.+|...|+..+|+++|+++.. .|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 344566777778888888888888888765 34777888888888888888888888888753 4788877653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.19 Score=46.21 Aligned_cols=91 Identities=11% Similarity=0.009 Sum_probs=60.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
..-.+-+.|++++|..+|..+...++ .+...+..|..++-..+++++|...|..+...+.. |...+-.....|...
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~---~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l 118 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDF---YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHh
Confidence 44455667777777777777766542 33446677777777777777777777776555432 444445566677777
Q ss_pred CCHHHHHHHHHHHHh
Q 002814 242 GYCQEAISVFNSMKR 256 (877)
Q Consensus 242 g~~~~A~~~~~~m~~ 256 (877)
|+.+.|+..|+....
T Consensus 119 ~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 119 RKAAKARQCFELVNE 133 (165)
T ss_pred CCHHHHHHHHHHHHh
Confidence 777777777777665
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.16 E-value=3.7 Score=40.56 Aligned_cols=223 Identities=17% Similarity=0.119 Sum_probs=128.6
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 313 GLWEAARNLFNEMVHRGID-QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK-NISPNVVTYSTMIDGYAKAGRLDDALN 390 (877)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~~~~~li~~~~~~g~~~~A~~ 390 (877)
+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444443211 12455556666666666666666666655431 122244555555666666666677777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 391 MFSEMKFLGIGLDRVSYNTVLS-IYAKLGRFEEALLVCKEMESSGI--RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (877)
Q Consensus 391 ~~~~m~~~g~~pd~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (877)
.+.......... ......... .+...|+++.|...+.+...... ......+......+...++.+++...+.+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 776666543222 122222222 56677777777777777654221 12333444444446677788888888887776
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002814 468 DCVSP-NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (877)
Q Consensus 468 ~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (877)
.. .. ....+..+...+...+.++.|...+......... ....+..+...+...|..+++...+.+....
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 52 22 3566777777777788888888888887765321 2344444444555667788888888887764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.48 Score=43.70 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 002814 230 AFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR-----NGVQPDRIT 301 (877)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~-----~g~~p~~~t 301 (877)
+...++..+...|++++|+.+.+++....+. |...|..+|.++...| +...|.++|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g-~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQG-RRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555555556666666666655553322 4555555666666666 55666655555532 355555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.12 E-value=3.1 Score=44.40 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002814 507 ADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (877)
Q Consensus 507 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (877)
.|...+..++.++.-.|+.++|.+.+++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 35555667777888888888888888888765
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.06 E-value=5.3 Score=41.86 Aligned_cols=295 Identities=17% Similarity=0.128 Sum_probs=171.6
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHCCCCCCHHHHH--
Q 002814 230 AFSALISAYG--RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC--GKGGVDFKHVVEIFDDMLRNGVQPDRITFN-- 303 (877)
Q Consensus 230 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~-- 303 (877)
.|.+|-.++. ..|+-..|.++-.+..+. +.-|....-.++.+- .-.| +++.|.+-|+.|.. |..|-.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG-~~~~Ar~kfeAMl~-----dPEtRllG 156 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEG-DYEDARKKFEAMLD-----DPETRLLG 156 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcC-chHHHHHHHHHHhc-----ChHHHHHh
Confidence 3444444433 345666666655544321 122444444444432 2346 67777777777765 233322
Q ss_pred --HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC-CCCCHHH--HHHHHHH
Q 002814 304 --SLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN-ISPNVVT--YSTMIDG 378 (877)
Q Consensus 304 --~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~~--~~~li~~ 378 (877)
.|.-...+.|..+.|+.+-+..-..- +--...+.+.+...|..|+++.|+++++.-.... +.+|+.- -..|+.+
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA 235 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA 235 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Confidence 22222345677777777776665542 1235667777888888888888888887654332 2333322 1122221
Q ss_pred HH---HcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002814 379 YA---KAGRLDDALNMFSEMKFLGIGLDRVSYN-TVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454 (877)
Q Consensus 379 ~~---~~g~~~~A~~~~~~m~~~g~~pd~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 454 (877)
-. -.-+...|.+.-.+..+. .||.+--. .-..++.+.|+..++-.+++.+-+.. |.+..+.. -.+.+.|+
T Consensus 236 kA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gd 309 (531)
T COG3898 236 KAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGD 309 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCC
Confidence 11 122345555555444443 66654332 33467889999999999999998774 55544432 23455665
Q ss_pred HHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCChHHHHHH
Q 002814 455 YDEVRRMFEQMKAD-CVSP-NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK-NGLVESAVSL 531 (877)
Q Consensus 455 ~~~A~~~~~~m~~~-g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~ 531 (877)
.- ..-+++.... .++| +......+..+-...|++..|..--+..... .|....|..|.+.-.. .|+-.++...
T Consensus 310 ta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 310 TA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred cH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHH
Confidence 32 2222222111 1233 5667777888888899999888777766654 5788888888876554 5999999999
Q ss_pred HHHHHHCCCCC
Q 002814 532 LDEMTKEGIRP 542 (877)
Q Consensus 532 ~~~m~~~g~~p 542 (877)
+-+..+.--.|
T Consensus 386 lAqav~APrdP 396 (531)
T COG3898 386 LAQAVKAPRDP 396 (531)
T ss_pred HHHHhcCCCCC
Confidence 99888753334
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.25 Score=53.14 Aligned_cols=70 Identities=17% Similarity=0.098 Sum_probs=50.8
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 002814 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE 222 (877)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (877)
+..++.+..+...|.+.|++++|+..|+.++..++.......+|..+..+|.+.|++++|++.++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3446667777888888888888888888888876322111134777888888888888888888888764
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.05 E-value=1.8 Score=43.73 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=64.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
-...+...|++.+|...|..+.... +.+..+...++.+|...|+++.|..++..+...-.........+-|..+.+.
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 3445666777777777777777664 3334455667777777777777777777665432111111112233344444
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 002814 242 GYCQEAISVFNSMKRYNLKP-NLVTYNAVIDACGKGGVDFKHVVEIFDDML 291 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~ 291 (877)
....+..++-.+... .| |...-..+...+...| +.+.|.+.+-.++
T Consensus 217 a~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g-~~e~Ale~Ll~~l 263 (304)
T COG3118 217 AATPEIQDLQRRLAA---DPDDVEAALALADQLHLVG-RNEAALEHLLALL 263 (304)
T ss_pred hcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 444444444333333 23 3444444445555555 5555555544444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.05 E-value=8.3 Score=44.02 Aligned_cols=92 Identities=18% Similarity=0.130 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 552 (877)
.-.+.+--+.-+...|+..+|.++-.+.+ .||-..|..-+.+++..+++++-+++-+.++. ..-|.-++.
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHH
Confidence 34455666667778899999999887775 47999999999999999999987776666542 345666889
Q ss_pred HHhhcCChhhhHHHHHHHhhhh
Q 002814 553 AFGRSATTECTVDDVERDLGKQ 574 (877)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~ 574 (877)
+|.+.|+.+||.++.-+.-.+.
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l~ 774 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGLQ 774 (829)
T ss_pred HHHhcccHHHHhhhhhccCChH
Confidence 9999999999999887665554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.3 Score=48.07 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH
Q 002814 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLK-ADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV--TYNSIID 552 (877)
Q Consensus 476 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~ 552 (877)
+-..+..++-+.|+.++|++.|++|.+.... -.......|+.++...+.+.++..++.+-.+... |+.. .|+..+-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaALL 339 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAALL 339 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHHH
Confidence 3345666667788888888888888754322 2334666788888888888888888887654322 3333 4554333
Q ss_pred HHhhcCCh---------------hhhHHHHHHHhhhhhhhh
Q 002814 553 AFGRSATT---------------ECTVDDVERDLGKQKESA 578 (877)
Q Consensus 553 ~~~~~g~~---------------~~a~~~~~~~l~~~~~~~ 578 (877)
.....|+. ..|++.+.++++.+|..+
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 32222221 235566778888877654
|
The molecular function of this protein is uncertain. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.29 Score=48.44 Aligned_cols=105 Identities=21% Similarity=0.279 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhh
Q 002814 506 KADVVLYSALIDALCK-----NGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANL 580 (877)
Q Consensus 506 ~p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~ 580 (877)
+.|..+|...+..+.. .+.++-....++.|.+.|++-|..+|..|+..+-+..-...- ++.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~n--vfQ------------ 129 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQN--VFQ------------ 129 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHH--HHH------------
Confidence 3466666666666543 355677777899999999999999999999988654322110 000
Q ss_pred hhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 002814 581 DAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNS 660 (877)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~ 660 (877)
..|- +--+.-++++.++++|...|+.||..+-..|++++.+.|-
T Consensus 130 ----------------------~~F~--------------HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 130 ----------------------KVFL--------------HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ----------------------HHHh--------------hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 0110 0001345799999999999999999999999999998775
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.96 E-value=9.2 Score=44.09 Aligned_cols=129 Identities=15% Similarity=0.155 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 406 SYNTVLSIYAKLG-----RFEEALLVCKEMESSGIRKDAVTYNALLGGYGK-QGKYDEVRRMFEQMKADCVSPNLLTYST 479 (877)
Q Consensus 406 ~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 479 (877)
...-+..+|.+.. +.+.|..++.+.-+.| .|+....-..+..... ..+...|.++|...-..|. ...+-.
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHH
Confidence 3444445554422 5566777777777766 4444433333222222 2456778888887777763 233333
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 002814 480 LIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGI 540 (877)
Q Consensus 480 li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 540 (877)
+..+|.. ..+.+.|..++++..+.| .+....-...+..+.. +.++.+.-.+..+.+.|.
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 3333322 236777778887777776 2221111222222333 666666666666665543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.44 Score=42.83 Aligned_cols=84 Identities=8% Similarity=0.046 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
+..+-.-.....+.|+|++|++.|+.+..+-+..+-...+-..++.+|.+.+++++|...+++.++..+...-.-|-..+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 44444455666788999999999998888765555555667788889999999999999999998875442233444444
Q ss_pred HHHH
Q 002814 236 SAYG 239 (877)
Q Consensus 236 ~~~~ 239 (877)
.+++
T Consensus 90 ~gL~ 93 (142)
T PF13512_consen 90 RGLS 93 (142)
T ss_pred HHHH
Confidence 4444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.86 E-value=10 Score=44.00 Aligned_cols=185 Identities=13% Similarity=0.135 Sum_probs=115.5
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
+......+..+.+...+.-|+.+-.. ++........+.....+-+.+.|++++|..-|-+.+.. .+| ..+|
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi 404 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVI 404 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHH
Confidence 34455667777778888888876542 22111222234445566677889999998887766543 222 2355
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 315 (877)
.-|....+..+-..+++.+.+.|+. +..--..|+.+|.+.+ +.++-.++.+.-- .|.. ..-....+..+.+.+-.
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlk-d~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLK-DVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhc-chHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 6667777778888888888888876 6666677888898888 7777666655433 2211 11134566777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 002814 316 EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (877)
Q Consensus 316 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (877)
++|..+-.+... .......+ +-..+++++|++.+..|.-
T Consensus 480 ~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCH
Confidence 777766544433 23333333 3456778888888777653
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.85 E-value=9.2 Score=46.07 Aligned_cols=153 Identities=18% Similarity=0.214 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHcCCHHHH
Q 002814 348 AQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVS----YNTVLSIYAKLGRFEEA 423 (877)
Q Consensus 348 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~----~~~li~~~~~~g~~~~A 423 (877)
++++.|+.-+.++.. ..|.-.++.-.+.|.+.+|+.+++ +|... |.+..+-+...+++++|
T Consensus 894 ~ry~~AL~hLs~~~~-------~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~A 958 (1265)
T KOG1920|consen 894 KRYEDALSHLSECGE-------TYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEA 958 (1265)
T ss_pred HHHHHHHHHHHHcCc-------cccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHH
Confidence 455666655555431 123333444455666666666553 23332 33333344455566666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002814 424 LLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLL--TYSTLIDVYSKGGLYKEAMQIFREFK 501 (877)
Q Consensus 424 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~li~~~~~~g~~~~A~~~~~~m~ 501 (877)
.-.|+..-+. .--+.+|..+|++.+|+.+..++... -|.. +-..|+.-+...++.-+|-++..+..
T Consensus 959 al~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 5555543211 12345566666666666666655432 1111 12345555556666666666655544
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002814 502 QAGLKADVVLYSALIDALCKNGLVESAVSLLDEM 535 (877)
Q Consensus 502 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 535 (877)
.. ..-.+..||+...+++|+++-...
T Consensus 1027 sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1027 SD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred cC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 31 112233445555566665554443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.84 E-value=4.7 Score=40.13 Aligned_cols=80 Identities=16% Similarity=0.079 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 002814 194 KLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVID 271 (877)
Q Consensus 194 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 271 (877)
.+|+.-+. -...|++++|...|+.+..+.+- -...+.-.++-++.+.+++++|+..+++....-+.-....|...|.
T Consensus 36 ~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 34444443 55778999999999998876322 2244555666778889999999999998887544334455655566
Q ss_pred HHH
Q 002814 272 ACG 274 (877)
Q Consensus 272 ~~~ 274 (877)
+++
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.83 E-value=6.9 Score=42.00 Aligned_cols=141 Identities=11% Similarity=0.148 Sum_probs=78.1
Q ss_pred HHccCCHHHHHHHHHHHHHccccCCC---hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc
Q 002814 166 LGNRGEWSKAIQCFAFAVKREERKND---QGKLASAMISILGRLGKVDLAKNIFETALNE-GYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~ 241 (877)
+.+++++++|.++|.++.+.....+. ...+.+.++++|.- ++.+.....+....+. |..+-...|..| .+-+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L--~~Y~~ 92 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKAL--VAYKQ 92 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHH--HHHHh
Confidence 45678899999999888766422211 12234566666653 4566666666555443 222222222222 23477
Q ss_pred CCHHHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC----CCCCCHHHHH
Q 002814 242 GYCQEAISVFNSMKRY--NLKP------------NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN----GVQPDRITFN 303 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~----g~~p~~~t~~ 303 (877)
+.+++|++.|..-.+. +-.+ |...-+..+..+...| ++.++..+++++... ...-+..+|+
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g-~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETG-RFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 8889998888776543 2111 1122234455566666 677777666666543 2334566666
Q ss_pred HHHHHHH
Q 002814 304 SLLAVCS 310 (877)
Q Consensus 304 ~ll~~~~ 310 (877)
.++-+++
T Consensus 172 ~~vlmls 178 (549)
T PF07079_consen 172 RAVLMLS 178 (549)
T ss_pred HHHHHHh
Confidence 6555544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.38 Score=50.60 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=75.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCH
Q 002814 306 LAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRL 385 (877)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 385 (877)
.+.|.+.|++..|...|++.+.. +. |.+.-+.++...... .-..+++.+.-+|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhhH
Confidence 45677777888777777776543 00 001111111111111 1234455666677777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHH
Q 002814 386 DDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE-VRRMFEQ 464 (877)
Q Consensus 386 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~ 464 (877)
.+|++...+.+..+ +.|....---..+|...|+++.|+..|+++++.. +.|-.+-+.|+..-.+.....+ ..++|..
T Consensus 274 ~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 274 KEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766665 5556666666667777777777777777776654 3343344444444333333332 3555555
Q ss_pred HHH
Q 002814 465 MKA 467 (877)
Q Consensus 465 m~~ 467 (877)
|..
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=2.4 Score=45.96 Aligned_cols=160 Identities=10% Similarity=0.040 Sum_probs=92.2
Q ss_pred hhH--HHHHHHHHcc-----CCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 002814 157 DDY--TFLLRELGNR-----GEWSKAIQCFAFAVKREERKNDQGKLASAMISILGR---------LGKVDLAKNIFETAL 220 (877)
Q Consensus 157 ~~~--~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 220 (877)
+.| ...+++.... -..++|+.+|.+++......|.....|..+..++.. ..+..+|.++.++++
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 5555555442 234578888888883322234555555554443322 223456777777777
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCH
Q 002814 221 NEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN-LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDR 299 (877)
Q Consensus 221 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~ 299 (877)
+.+.. |..+...+..++.-.++++.|..+|++....+ || ..+|....-.+.-.| +.++|.+.+++.++. .|..
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G-~~~~a~~~i~~alrL--sP~~ 405 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNE-KIEEARICIDKSLQL--EPRR 405 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcc--Cchh
Confidence 76644 77777777777777777888888888887643 44 334444444444567 778888888876664 2322
Q ss_pred ---HHHHHHHHHHHhCCCHHHHHHHHH
Q 002814 300 ---ITFNSLLAVCSRGGLWEAARNLFN 323 (877)
Q Consensus 300 ---~t~~~ll~~~~~~g~~~~A~~~~~ 323 (877)
......++.|+.. .++.|+++|-
T Consensus 406 ~~~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 406 RKAVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred hHHHHHHHHHHHHcCC-chhhhHHHHh
Confidence 2222233344443 3455555543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.3 Score=48.33 Aligned_cols=35 Identities=20% Similarity=0.386 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 002814 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG 276 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 276 (877)
+.++--...+..|.+.|+..|..+|+.||+.+-+.
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKg 120 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKG 120 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccc
Confidence 34444445566667777777777777777766543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.6 Score=41.53 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALID 517 (877)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 517 (877)
|..++..++.++++.|+++....+++..-. +..+... ..+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 455667777777777777777666655432 2211100 0000 1123446789999999999
Q ss_pred HHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhhcCC
Q 002814 518 ALCKNGLVESAVSLLDEMTK-EGIRPNVVTYNSIIDAFGRSAT 559 (877)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~ 559 (877)
+|+.+|++..|+++++...+ .++.-+..+|..|+.-+...-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999874 4787788899999987755443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.94 Score=50.04 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYA 415 (877)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 415 (877)
-.+.++..+-+.|..+.|+++..+-. .-.+...+.|+++.|.++.++ ..+...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHH
Confidence 34555555555555555554443211 123344445555555444322 123444555555555
Q ss_pred HcCCHHHHHHHHHH
Q 002814 416 KLGRFEEALLVCKE 429 (877)
Q Consensus 416 ~~g~~~~A~~~~~~ 429 (877)
+.|+++-|.+.|.+
T Consensus 359 ~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 359 RQGNIELAEECYQK 372 (443)
T ss_dssp HTTBHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHh
Confidence 55555555554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.39 E-value=1.9 Score=39.28 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=19.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002814 198 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240 (877)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 240 (877)
.++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444444445554444444432 234444444444443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.7 Score=48.67 Aligned_cols=138 Identities=15% Similarity=0.168 Sum_probs=84.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002814 340 LLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGR 419 (877)
Q Consensus 340 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~ 419 (877)
-.+.|.+.|++..|...|++.... . -|.+.-+.++..... ..-..++..|.-+|.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~------l-------~~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF------L-------EYRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH------h-------hccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhh
Confidence 346788888888888888876542 0 011111112221111 1123456677778888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCH-HHHHHHH
Q 002814 420 FEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTY-STLIDVYSKGGLY-KEAMQIF 497 (877)
Q Consensus 420 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~li~~~~~~g~~-~~A~~~~ 497 (877)
+.+|++...+.+..+ +.|+....--..+|...|+++.|+..|+++++. .|+-... +.|+.+-.+.... +...++|
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877 777877777788888888888888888888875 4443333 3333333332222 2234455
Q ss_pred HHHH
Q 002814 498 REFK 501 (877)
Q Consensus 498 ~~m~ 501 (877)
..|.
T Consensus 350 ~~mF 353 (397)
T KOG0543|consen 350 ANMF 353 (397)
T ss_pred HHHh
Confidence 5554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.14 E-value=18 Score=43.84 Aligned_cols=108 Identities=13% Similarity=0.165 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 442 YNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLI----DVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALID 517 (877)
Q Consensus 442 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 517 (877)
|.-.++.--+.|.+.+|+.++ .|+...+.... .-+...+.+++|.-.|+..-+. .--+.
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~ 973 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALK 973 (1265)
T ss_pred cHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHH
Confidence 333444444555555555544 33444444333 3334456666666665543211 12345
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhhcCChhhhHHHHHH
Q 002814 518 ALCKNGLVESAVSLLDEMTKEGIRPNVV--TYNSIIDAFGRSATTECTVDDVER 569 (877)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~ 569 (877)
+|..+|+|.+|+.+-.+|... -+.. +-..|+.-+...++.-+|-++..+
T Consensus 974 a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e 1024 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLE 1024 (1265)
T ss_pred HHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence 666777777777777766531 1222 225666777777777766665433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.02 E-value=2.4 Score=47.56 Aligned_cols=178 Identities=13% Similarity=0.139 Sum_probs=118.5
Q ss_pred HHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh----cCCH
Q 002814 175 AIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTV------YAFSALISAYGR----SGYC 244 (877)
Q Consensus 175 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~------~~~~~li~~~~~----~g~~ 244 (877)
..-+|.-++..= |+ -+..++...+-.|+-+.+.+.+.+..+.+--..+ ..|+..+..++. ....
T Consensus 176 G~G~f~L~lSlL---Pp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 176 GFGLFNLVLSLL---PP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHhC---CH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 345666666552 33 4577888899999999999999888764322222 234444544443 4567
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhCCCHHHHHH
Q 002814 245 QEAISVFNSMKRYNLKPNLVTYNAVID-ACGKGGVDFKHVVEIFDDMLRNG---VQPDRITFNSLLAVCSRGGLWEAARN 320 (877)
Q Consensus 245 ~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~~a~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~g~~~~A~~ 320 (877)
+.|.++++.+.+. .|+...|...-. .+...| ++++|++.|++..... .+.....+--+.-.+.-.+++++|..
T Consensus 250 ~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g-~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 250 EEAEELLEEMLKR--YPNSALFLFFEGRLERLKG-NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhc-CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 8899999999874 477776655443 355567 9999999999766421 12234455667777888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHH-HHHHHHHcCCH-------HHHHHHHHHchh
Q 002814 321 LFNEMVHRGIDQDIFTYNT-LLDAICKGAQM-------DLAFEIMAEMPA 362 (877)
Q Consensus 321 ~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~-------~~A~~~~~~m~~ 362 (877)
.|..+.+..-- ...+|.- ...++...|+. ++|.++|.+...
T Consensus 327 ~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 327 YFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999886321 2223332 23344567777 899999988764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.01 E-value=3.4 Score=36.32 Aligned_cols=134 Identities=17% Similarity=0.260 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHH---HHHHHHHHHHcCCHHHH
Q 002814 312 GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVT---YSTMIDGYAKAGRLDDA 388 (877)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~---~~~li~~~~~~g~~~~A 388 (877)
.|.+++..++..+.... .+..-||.+|--....-+-+...++++.+-+. .|... ...++.+|.+.|..
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n~~--- 85 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRNKL--- 85 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT-----
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhcch---
Confidence 46666666666666654 24444554444443333444444444443321 12111 12233333333322
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 389 LNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (877)
Q Consensus 389 ~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (877)
..-...-++.+.+.|+-|+-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-++
T Consensus 86 ---------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 86 ---------------SEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp ----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred ---------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 1222334455556666666666666665433 556666666666666666666666666666665
Q ss_pred CC
Q 002814 469 CV 470 (877)
Q Consensus 469 g~ 470 (877)
|+
T Consensus 150 G~ 151 (161)
T PF09205_consen 150 GL 151 (161)
T ss_dssp T-
T ss_pred ch
Confidence 53
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.81 Score=40.68 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 002814 365 ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL-GIGLDRVSYNTVLS 412 (877)
Q Consensus 365 ~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~~~~~li~ 412 (877)
..|+..+..+++.+|+..|++..|+++++...+. +++.+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3455555555555555555555555555554332 44444555555554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.97 E-value=3.1 Score=46.74 Aligned_cols=179 Identities=16% Similarity=0.157 Sum_probs=123.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHcC---CCCHHH
Q 002814 212 AKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYN-LKPN-----LVTYNAVIDACGKG---GVDFKH 282 (877)
Q Consensus 212 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-----~~~~~~ll~~~~~~---g~~~~~ 282 (877)
..-+|.-++.. ++| ....++...+=.|+-+.+++++.+..+.+ +.-. ...|+.++..++.. +.+.+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34456666654 233 45567777888899999999999877632 3211 22456666555443 347899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 283 VVEIFDDMLRNGVQPDRITFNS-LLAVCSRGGLWEAARNLFNEMVHRG---IDQDIFTYNTLLDAICKGAQMDLAFEIMA 358 (877)
Q Consensus 283 a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (877)
|.++++.+.+. -|+...|.. -.+.+...|++++|.+.|++..... -......+--+...+.-..++++|.+.|.
T Consensus 252 a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 99999999986 566655543 3467788999999999999766421 11234556677888999999999999999
Q ss_pred HchhCCCCCCHHHHHHHHH-HHHHcCCH-------HHHHHHHHHHHH
Q 002814 359 EMPAKNISPNVVTYSTMID-GYAKAGRL-------DDALNMFSEMKF 397 (877)
Q Consensus 359 ~m~~~g~~pd~~~~~~li~-~~~~~g~~-------~~A~~~~~~m~~ 397 (877)
++.+..-. +..+|.-+.. ++...|+. ++|.++|.+...
T Consensus 330 ~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 330 RLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99986433 3445554443 44567777 899999998754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.96 E-value=6.8 Score=38.43 Aligned_cols=93 Identities=14% Similarity=0.117 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh----c--CCcchhHHHHH-hhccccchHHHHHHHHHHHhhcCCCcchhHHHHHH
Q 002814 648 FSAILNACSRCNSFEDASMLLEELRL----F--DNQVYGVAHGL-LMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALT 720 (877)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~----~--~~~~~~~~~~l-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 720 (877)
+..+...+.+...++||-..|.+-.. . -+..+...... +..+...++..|++.++..-+.+....+.-.+++-
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 44455556666666666665544321 1 11222222222 22235668888888888765554433333344444
Q ss_pred HHH--HhcCchhhHHHHHHHhh
Q 002814 721 DML--WHFGQKRGAQLVVLEGK 740 (877)
Q Consensus 721 ~~~--~~~g~~~~A~~~~~~~~ 740 (877)
+++ +..|+.+++.++..-+.
T Consensus 233 nLL~ayd~gD~E~~~kvl~sp~ 254 (308)
T KOG1585|consen 233 NLLTAYDEGDIEEIKKVLSSPT 254 (308)
T ss_pred HHHHHhccCCHHHHHHHHcChH
Confidence 433 45677777777665443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.95 E-value=2.1 Score=47.36 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHH
Q 002814 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDG 378 (877)
Q Consensus 299 ~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~ 378 (877)
..-.+.+++.+.+.|..+.|+++-..-. .-.+...+.|+++.|.++.++.. +...|..|.+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~------~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD------DPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS------THHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC------cHHHHHHHHHH
Confidence 3345666666667777776666543221 22344556677777766655443 55667777777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 379 YAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEV 458 (877)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 458 (877)
..+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.+.....| . +|....++...|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHH
Confidence 7777777777777665432 4455556666677666666666665554 1 33333444445666655
Q ss_pred HHHHHH
Q 002814 459 RRMFEQ 464 (877)
Q Consensus 459 ~~~~~~ 464 (877)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.91 E-value=9.2 Score=39.70 Aligned_cols=125 Identities=14% Similarity=0.077 Sum_probs=63.6
Q ss_pred HccCCHHHHHHHHHHHHHcc-ccCCChH----HHHHHHHHHHHhcC-ChHHHHHHHHHHHHc--------CCCCC-----
Q 002814 167 GNRGEWSKAIQCFAFAVKRE-ERKNDQG----KLASAMISILGRLG-KVDLAKNIFETALNE--------GYGNT----- 227 (877)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------g~~~~----- 227 (877)
.+.|+++.|..++.++.... ...+... .++..++..+.+.+ +++.|...++++.+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35788888888888876544 2222211 11222333344445 777776666655432 11122
Q ss_pred HHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Q 002814 228 VYAFSALISAYGRSGYCQ---EAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN 293 (877)
Q Consensus 228 ~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~ 293 (877)
..+...|+.+|...+..+ +|..+++.+...... ....+-.-+..+.+.+ +.+.+.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~-~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSF-DEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccC-ChhHHHHHHHHHHHh
Confidence 234555566666555443 344455555432211 2334444455555555 566666666666654
|
It is also involved in sporulation []. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.84 E-value=12 Score=40.81 Aligned_cols=182 Identities=12% Similarity=0.138 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 552 (877)
|.....+++..+++..+..-...+..+|...| -+...|..++.+|..+ ..++-..+++++.+..+. |.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 34445566666766666666667777777655 3566677777777766 456666777777765432 3334444554
Q ss_pred HHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHH
Q 002814 553 AFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGV 632 (877)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~ 632 (877)
.|-+ ++.+.+...+.+++..+...... ......|..+....+. +.+.-+.+
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~-----------~~i~evWeKL~~~i~d-----------------D~D~fl~l 191 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQN-----------AAIKEVWEKLPELIGD-----------------DKDFFLRL 191 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhh-----------hhHHHHHHHHHHhccc-----------------cHHHHHHH
Confidence 4444 66667767666666554432100 0000122222222111 23334445
Q ss_pred HHHHH-HCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhh
Q 002814 633 FQKMH-KLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLM 687 (877)
Q Consensus 633 ~~~m~-~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~ 687 (877)
..+.+ ..|..--.+.+.-+-.-|....+++||++++..+.+.|..++.+..+++.
T Consensus 192 ~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 192 QKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred HHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHH
Confidence 55554 34555556667777778888899999999999999888888777666643
|
|
| >KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.24 Score=55.73 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=5.4
Q ss_pred HHHHHHHHHcCC
Q 002814 648 FSAILNACSRCN 659 (877)
Q Consensus 648 ~~~ll~a~~~~g 659 (877)
|+-+..+|-++.
T Consensus 719 f~~F~~~~k~~~ 730 (830)
T KOG1923|consen 719 FVRFVRAYKMAR 730 (830)
T ss_pred HHHHHHHHHhhh
Confidence 444444444433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.70 E-value=3.4 Score=44.92 Aligned_cols=162 Identities=11% Similarity=0.142 Sum_probs=87.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002814 161 FLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240 (877)
Q Consensus 161 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 240 (877)
.++..--+..+.+.-+++-.+++...+ +-..+|..|.. -...-..+|+++|+++++.|-. . +.+
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~p---dCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~----~-------lg~ 236 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINP---DCADAYILLAE--EEASTIVEAEELLRQAVKAGEA----S-------LGK 236 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhh---hhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHH----h-------hch
Confidence 355555566777777777777877752 22223333222 2345578888888888765311 1 111
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHH
Q 002814 241 SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP-DRITFNSLLAVCSRGGLWEAAR 319 (877)
Q Consensus 241 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~ 319 (877)
....+..-..++.+..+...+-..+=..+..++.+.| +.++|++.|++|.+..... +......|+.++...+.+.++.
T Consensus 237 s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklG-r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 237 SQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLG-RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred hhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhC-ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 0000000011111222212222223334555566777 7888888888887653221 2345667888888888888888
Q ss_pred HHHHHHHHcCCCC-CHHHHHH
Q 002814 320 NLFNEMVHRGIDQ-DIFTYNT 339 (877)
Q Consensus 320 ~~~~~m~~~g~~~-~~~~~~~ 339 (877)
.++.+..+...+. -...|+.
T Consensus 316 ~lL~kYdDi~lpkSAti~YTa 336 (539)
T PF04184_consen 316 ALLAKYDDISLPKSATICYTA 336 (539)
T ss_pred HHHHHhccccCCchHHHHHHH
Confidence 8888765543222 2344554
|
The molecular function of this protein is uncertain. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.31 Score=45.34 Aligned_cols=78 Identities=13% Similarity=0.019 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHHhhcc------c-----cchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCc-
Q 002814 661 FEDASMLLEELRLFDNQVYGVAHGLLMGY------R-----DNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQ- 728 (877)
Q Consensus 661 ~~eA~~~~~~~~~~~~~~~~~~~~l~~~~------~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 728 (877)
++.|++.++..-..||.+...++++..++ + ...+++|++=|++++.++| .....+.+|+.+|...|.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P-~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINP-NKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhh
Confidence 34555555555556666666555542221 1 2356777788888888888 566777788888865543
Q ss_pred ---hhhHHHHHHHh
Q 002814 729 ---KRGAQLVVLEG 739 (877)
Q Consensus 729 ---~~~A~~~~~~~ 739 (877)
..+|..+|+++
T Consensus 86 ~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 86 TPDTAEAEEYFEKA 99 (186)
T ss_dssp ---HHHHHHHHHHH
T ss_pred cCChHHHHHHHHHH
Confidence 23444444443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.43 E-value=10 Score=38.63 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=54.8
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 309 CSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDA 388 (877)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 388 (877)
....|++.+|..+|+......-+ +...-..|+.+|...|+.+.|..+++.+...--.........-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34455555566655555554211 23444455556666666666666666555431111112222233334444333333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 389 LNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEME 431 (877)
Q Consensus 389 ~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (877)
..+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333222 2244444445555555555555555544443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.40 E-value=4.8 Score=36.66 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=18.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 002814 234 LISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK 275 (877)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 275 (877)
+|..+...+.....+.+++.+...+. .+...+|.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 44444444444444444444444332 233444444444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.59 Score=46.70 Aligned_cols=92 Identities=20% Similarity=0.168 Sum_probs=60.4
Q ss_pred HHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCC
Q 002814 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISAYGRSGY 243 (877)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~ 243 (877)
+...|++..|...|..-++..+...-....+--|..++...|++++|..+|..+.+.-.. .-...+.-|.....+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 345666777777777777765544444445666777777777777777777777664221 123566666677777777
Q ss_pred HHHHHHHHHHHHhC
Q 002814 244 CQEAISVFNSMKRY 257 (877)
Q Consensus 244 ~~~A~~~~~~m~~~ 257 (877)
.++|...|+++.+.
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.33 E-value=16 Score=40.79 Aligned_cols=371 Identities=11% Similarity=0.087 Sum_probs=205.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHH-HHhcCChHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHH
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISI-LGRLGKVDLAKNIFETALNE-GYG-NTVYAFSALISAY 238 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~-g~~-~~~~~~~~li~~~ 238 (877)
....=.+.|..+.+.++|++.++.- +....+|...... ....|+.+..+..|+.+... |.. .....|...|.--
T Consensus 85 fA~~E~klg~~~~s~~Vfergv~ai---p~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~e 161 (577)
T KOG1258|consen 85 FADYEYKLGNAENSVKVFERGVQAI---PLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFE 161 (577)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHH
Confidence 3334456788999999999998763 3444455554443 33567888899999998764 221 2456888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HcCC-----CCHHHHHHHHHHHHHC---C-CCCCHHHHHHHH
Q 002814 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC---GKGG-----VDFKHVVEIFDDMLRN---G-VQPDRITFNSLL 306 (877)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~g-----~~~~~a~~~~~~m~~~---g-~~p~~~t~~~ll 306 (877)
..+++......+|++.++. | ..-|+....-| .+.. +..+++.++-...... + ..........-+
T Consensus 162 n~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v 237 (577)
T KOG1258|consen 162 NGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGV 237 (577)
T ss_pred hccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHH
Confidence 8899999999999999973 2 23333333332 2221 1233333332222210 0 001111111111
Q ss_pred HHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC-------CCCCCHHHHHHHHHH
Q 002814 307 AVCSR-GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK-------NISPNVVTYSTMIDG 378 (877)
Q Consensus 307 ~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~pd~~~~~~li~~ 378 (877)
+--.. .+.++++.....+... ..-.++-..-...+.+..|++-..+ -..++..+|+.-++.
T Consensus 238 ~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf 306 (577)
T KOG1258|consen 238 KDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDF 306 (577)
T ss_pred hhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhh
Confidence 11111 1222222222222211 1111222222233333344433322 123356788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHH
Q 002814 379 YAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIR--KDAVTYNALLGGYGKQGKYD 456 (877)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~ 456 (877)
-.+.|+.+.+.-+|++..-- +..=...|--.+.-....|+.+-|..++....+--++ |......+.+ .-..|+++
T Consensus 307 ~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~ 383 (577)
T KOG1258|consen 307 EITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFD 383 (577)
T ss_pred hhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHH
Confidence 89999999999888886532 1111223333344444558888888887766554433 3333333333 33467999
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHH-----HHHcCChHH
Q 002814 457 EVRRMFEQMKADCVSPNLL-TYSTLIDVYSKGGLYKEAM---QIFREFKQAGLKADVVLYSALIDA-----LCKNGLVES 527 (877)
Q Consensus 457 ~A~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~A~---~~~~~m~~~g~~p~~~~~~~li~~-----~~~~g~~~~ 527 (877)
.|..+++.+.+.- |+.. .-..-+....+.|+.+.+. +++..... |- -+......+.-- +.-.++.+.
T Consensus 384 ~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~-~~~~i~~~l~~~~~r~~~~i~~d~~~ 459 (577)
T KOG1258|consen 384 DAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GK-ENNGILEKLYVKFARLRYKIREDADL 459 (577)
T ss_pred HHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cc-cCcchhHHHHHHHHHHHHHHhcCHHH
Confidence 9999999998873 5533 2233344556678888777 33333322 21 122222222221 233678899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 002814 528 AVSLLDEMTKEGIRPNVVTYNSIIDAFGRSA 558 (877)
Q Consensus 528 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 558 (877)
|..++.+|.+. ..++...|..++..+...+
T Consensus 460 a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 460 ARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 99999999886 4556678888888776555
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.27 E-value=3.7 Score=42.51 Aligned_cols=130 Identities=17% Similarity=0.134 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHH--
Q 002814 444 ALLGGYGKQGKYDEVRRMFEQMKADCV-----SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ----AGLKADVVLY-- 512 (877)
Q Consensus 444 ~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~-- 512 (877)
++..++...+.++++++.|+...+.-. .....++..|...|.+..++++|.-+..+..+ .++.--..-|
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 355555566666667666666543211 11234566677777777777776655544432 2222111122
Q ss_pred ---HHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCHH-HHHHHHHHHhhcCChhhhHHHHHHHhhh
Q 002814 513 ---SALIDALCKNGLVESAVSLLDEMTK----EGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGK 573 (877)
Q Consensus 513 ---~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~l~~ 573 (877)
..|.-++-..|...+|.+..++..+ .|-++... ...++.+.|...|+.|.|..-|+.++..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 2334466778888888887777643 35333332 4457788888999999988888877754
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.27 E-value=2.3 Score=37.11 Aligned_cols=94 Identities=17% Similarity=0.086 Sum_probs=70.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH--HHHHHHHHHHHcC
Q 002814 200 ISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY-NLKPNL--VTYNAVIDACGKG 276 (877)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~~~~~ll~~~~~~ 276 (877)
.-++...|+++.|++.|.+.+..-+ -...+||.-..++.-.|+.++|++-+++..+. |.+-.. .+|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3457888999999999999988643 37889999999999999999999999988764 333111 2233333446667
Q ss_pred CCCHHHHHHHHHHHHHCCC
Q 002814 277 GVDFKHVVEIFDDMLRNGV 295 (877)
Q Consensus 277 g~~~~~a~~~~~~m~~~g~ 295 (877)
| +.+.|..-|+..-+.|-
T Consensus 129 g-~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 G-NDDAARADFEAAAQLGS 146 (175)
T ss_pred C-chHHHHHhHHHHHHhCC
Confidence 7 78888888888877663
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.26 E-value=20 Score=41.46 Aligned_cols=243 Identities=16% Similarity=0.108 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHh
Q 002814 244 CQEAISVFNSMKRYNLKPNLVTYNAVIDAC-----GKGGVDFKHVVEIFDDMLR-------NGVQPDRITFNSLLAVCSR 311 (877)
Q Consensus 244 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-----~~~g~~~~~a~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~ 311 (877)
..+|.++++...+.| +...-..+...+ .... |.+.|+.+|+.+.. .| +......+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~-d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQ-DLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccc-cHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 456677777666544 333332222222 2333 67777777777765 33 22344455555555
Q ss_pred CC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHH----H
Q 002814 312 GG-----LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK-GAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYA----K 381 (877)
Q Consensus 312 ~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~----~ 381 (877)
.. +.+.|..++....+.|.+ +....-..+..... ..+...|.++|...-+.|.. ..+-.+..+|. -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCc
Confidence 32 556677777777766532 33332222222222 23566777777777766632 22222222221 2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHH---HH----cC
Q 002814 382 AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALL-GGY---GK----QG 453 (877)
Q Consensus 382 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-~~~---~~----~g 453 (877)
..+.+.|..++++.-+.| .+-..--...+..+.. ++.+.+...+..+.+.|.+ ...+-...+ ... .. ..
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhcccccccccccc
Confidence 345677777777777776 2222222222233333 6666666666666655532 111111111 111 01 12
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHC
Q 002814 454 KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKG----GLYKEAMQIFREFKQA 503 (877)
Q Consensus 454 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~----g~~~~A~~~~~~m~~~ 503 (877)
+.+.+..++.+....| +......|.+.|... .+.+.|...+......
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ 504 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence 4555566666655544 455555555555443 2356666666665554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.13 E-value=13 Score=38.88 Aligned_cols=25 Identities=20% Similarity=0.555 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHH
Q 002814 491 KEAMQIFREFKQAGLKADVVLYSAL 515 (877)
Q Consensus 491 ~~A~~~~~~m~~~g~~p~~~~~~~l 515 (877)
.++.++++.+.+.|++.....|..+
T Consensus 199 ~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 199 ARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHcCCccccccccHH
Confidence 3455566666666655555554444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.09 E-value=12 Score=38.72 Aligned_cols=102 Identities=12% Similarity=0.066 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 406 SYNTVLSIYAKLGRFE---EALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLID 482 (877)
Q Consensus 406 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 482 (877)
++..++.+|...+..+ +|..+++.+.... .....++-.-+..+.+.++.+++.+.+.+|+..- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 4556666776666543 4455555554332 2234455455566666777777778887777652 212333444444
Q ss_pred HHHh--cCCHHHHHHHHHHHHHCCCCCCH
Q 002814 483 VYSK--GGLYKEAMQIFREFKQAGLKADV 509 (877)
Q Consensus 483 ~~~~--~g~~~~A~~~~~~m~~~g~~p~~ 509 (877)
.+.+ ......|...++.++...+.+..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 4321 12334555556555544344433
|
It is also involved in sporulation []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.08 E-value=1.2 Score=44.71 Aligned_cols=98 Identities=17% Similarity=0.179 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHH
Q 002814 194 KLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLK-P-NLVTYNAV 269 (877)
Q Consensus 194 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~l 269 (877)
..|+.-+. +.+.|++..|.+.|...++..+. -...++-.|...+...|++++|..+|..+.+.-.+ | -..++--|
T Consensus 143 ~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 36666555 55778899999999999987433 12456677899999999999999999999864322 2 23566677
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHC
Q 002814 270 IDACGKGGVDFKHVVEIFDDMLRN 293 (877)
Q Consensus 270 l~~~~~~g~~~~~a~~~~~~m~~~ 293 (877)
..+..+.| +.++|...|+++++.
T Consensus 222 g~~~~~l~-~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLG-NTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHH
Confidence 77788888 899999999999986
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.85 E-value=8.3 Score=40.17 Aligned_cols=86 Identities=17% Similarity=0.308 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--CC---CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhCCC-
Q 002814 244 CQEAISVFNSMKRYNLKPNLVTYNAVIDACGK--GG---VDFKHVVEIFDDMLRNGV---QPDRITFNSLLAVCSRGGL- 314 (877)
Q Consensus 244 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g---~~~~~a~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~g~- 314 (877)
+++.+.+++.|.+.|++-+..+|-+....... .. ....++..+|+.|.+.-. .++...+..|+.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455666667776666665555442222222 11 023466677777766532 2344555555443 2222
Q ss_pred ---HHHHHHHHHHHHHcCCC
Q 002814 315 ---WEAARNLFNEMVHRGID 331 (877)
Q Consensus 315 ---~~~A~~~~~~m~~~g~~ 331 (877)
.+.++.+|+.+.+.|+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~ 175 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFK 175 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 24455555555555544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.84 E-value=16 Score=39.35 Aligned_cols=141 Identities=12% Similarity=0.161 Sum_probs=84.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--
Q 002814 201 SILGRLGKVDLAKNIFETALNEGYGNTV------YAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA-- 272 (877)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-- 272 (877)
-.+.+.+++.+|.++|.++-+.. ..+. ...+.++++|... +.+.....+....+. .|+ ..|-.+..+
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~~-s~~l~LF~~L~ 88 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FGK-SAYLPLFKALV 88 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cCC-chHHHHHHHHH
Confidence 34778999999999999986642 1122 2334566777643 455555555555542 122 233333333
Q ss_pred HHcCCCCHHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCCH
Q 002814 273 CGKGGVDFKHVVEIFDDMLRN--GVQP------------DRITFNSLLAVCSRGGLWEAARNLFNEMVHR----GIDQDI 334 (877)
Q Consensus 273 ~~~~g~~~~~a~~~~~~m~~~--g~~p------------~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~~~~ 334 (877)
+.+.+ .+.+|.+.+..-... +-.+ |-..=+..+..+...|++.+++.++++|... .+.-+.
T Consensus 89 ~Y~~k-~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 89 AYKQK-EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HHHhh-hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 34556 788888887766543 2111 1122244566777888888888888777654 334677
Q ss_pred HHHHHHHHHHHHc
Q 002814 335 FTYNTLLDAICKG 347 (877)
Q Consensus 335 ~~~~~li~~~~~~ 347 (877)
.+|+.++-++.+.
T Consensus 168 d~yd~~vlmlsrS 180 (549)
T PF07079_consen 168 DMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHHHHHhHH
Confidence 7888777666653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.31 Score=34.06 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=13.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc
Q 002814 159 YTFLLRELGNRGEWSKAIQCFAFAVKR 185 (877)
Q Consensus 159 ~~~ll~~~~~~g~~~~A~~~~~~~~~~ 185 (877)
+..+...|.+.|++++|+++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333444444455555555555555444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.39 Score=33.53 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHH
Q 002814 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVA 682 (877)
Q Consensus 647 t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~ 682 (877)
++..+..+|...|++++|.++|+++++.+|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~ 38 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAW 38 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 455677777777777777777777777666665443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.01 E-value=29 Score=40.42 Aligned_cols=178 Identities=15% Similarity=0.140 Sum_probs=111.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 002814 196 ASAMISILGRLGKVDLAKNIFETALNEGYGNT--VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC 273 (877)
Q Consensus 196 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 273 (877)
...-++.+.+...++.|..+...- +..++ ........+.+.+.|++++|...|-+.... +.|. .+|.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 456778888888888888776543 22222 122333344455789999999888876642 2332 345555
Q ss_pred HcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 274 GKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLA 353 (877)
Q Consensus 274 ~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 353 (877)
.... ....-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.-. .|.- .+-....+..+.+.+-.++|
T Consensus 408 Ldaq-~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 408 LDAQ-RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred cCHH-HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 5555 667777888888888876 55556778899999999888776655444 2211 11234456666667777777
Q ss_pred HHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 354 FEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEM 395 (877)
Q Consensus 354 ~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 395 (877)
..+-.+... ....... .+-..+++++|++.+..+
T Consensus 483 ~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 666554432 2333333 334567888888888765
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.94 E-value=29 Score=40.16 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=56.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
-++.+.+.+.+++|+.+-+......... ....+....|..|...|++++|..+.-.|... +..-|.-.+..+...
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~-~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERF-VIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCcccc-chHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 3666666667777766654433332111 12345566666666677777776666666542 556666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 002814 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK 275 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 275 (877)
++..+-.. -+.....+-+...|..+|..+..
T Consensus 437 ~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 55443222 22222122344556666666554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.86 E-value=7.5 Score=34.26 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC
Q 002814 302 FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN 364 (877)
Q Consensus 302 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 364 (877)
+...++.....|+-++-.+++.++.+. -.++....-.+..+|.+.|+..++-+++.+.-++|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333344444444444444444444331 12334444444444444444444444444444433
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.72 E-value=11 Score=38.72 Aligned_cols=116 Identities=11% Similarity=0.090 Sum_probs=60.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCH
Q 002814 240 RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDR----ITFNSLLAVCSRGGLW 315 (877)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~ 315 (877)
..|++.+|-..++++.+. .+-|..+++..=++|.-.| +...-...+++.+.. ..+|. +.-..+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G-~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNG-NQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhcc-chhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 455666666666666553 2235666666666666666 555555555555532 12222 1112222333455666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002814 316 EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAE 359 (877)
Q Consensus 316 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (877)
++|++.-++..+.+ +.|...-.++...+-..|++.++.+.+.+
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 66666655555543 23455555555555556666666555544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.60 E-value=12 Score=35.04 Aligned_cols=100 Identities=19% Similarity=0.285 Sum_probs=51.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 002814 249 SVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR 328 (877)
Q Consensus 249 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 328 (877)
+.+..+.+.++.|+...|..+++.+.+.| .+. .+..++..++-+|.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~-~~~----~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNG-QFS----QLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHH----HHHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 33444455566666667777777777666 443 2334445555555554443332222 2223334433344332
Q ss_pred CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHc
Q 002814 329 GIDQDIF-TYNTLLDAICKGAQMDLAFEIMAEM 360 (877)
Q Consensus 329 g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m 360 (877)
.. .+..+++.+...|++-+|+++.+..
T Consensus 88 -----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 -----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 11 3455566666667777776666654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.43 E-value=11 Score=34.92 Aligned_cols=124 Identities=18% Similarity=0.243 Sum_probs=60.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHH--HHcCCC
Q 002814 203 LGRLGKVDLAKNIFETALNEGYGNT-VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLV-TYNAVIDA--CGKGGV 278 (877)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~--~~~~g~ 278 (877)
+...+..++|...|..+.+.|...- +-...-........|+-..|+..|++.-.....|-.. -...|=.+ +...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g- 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG- 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc-
Confidence 3445556666666666655554321 1122222333445566666666666665443333332 11111111 33455
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002814 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVH 327 (877)
Q Consensus 279 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 327 (877)
.+++.....+-+...+-..-...-..|.-+-.+.|++..|.++|..+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5666555555554443333333445555555666666666666666654
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.31 E-value=26 Score=38.39 Aligned_cols=67 Identities=16% Similarity=0.102 Sum_probs=34.1
Q ss_pred CChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhC
Q 002814 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS-AYGRSGYCQEAISVFNSMKRY 257 (877)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~ 257 (877)
+.+..+|...+..+.+.+...+...+|..|+...+. ++..|-.-.. -|-.+-.++.|..+|.+-.+.
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 334556666666555555566666666666554221 3333322221 222233366666666665553
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.26 E-value=4.2 Score=38.48 Aligned_cols=88 Identities=10% Similarity=0.004 Sum_probs=60.9
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc------ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhc
Q 002814 653 NACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY------RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHF 726 (877)
Q Consensus 653 ~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 726 (877)
+-+.+.|++++|..-|.+++..-|....-...++.+- +.+.|+.|+.--.++++++| .......--+.+|-++
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhh
Confidence 4455678888888888888877665554444443322 46788889988888889888 4444444456678888
Q ss_pred CchhhHHHHHHHhhh
Q 002814 727 GQKRGAQLVVLEGKR 741 (877)
Q Consensus 727 g~~~~A~~~~~~~~~ 741 (877)
.++++|.+-+++..+
T Consensus 182 ek~eealeDyKki~E 196 (271)
T KOG4234|consen 182 EKYEEALEDYKKILE 196 (271)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888877766544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.99 E-value=13 Score=34.47 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 002814 229 YAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN-LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRIT-FNSLL 306 (877)
Q Consensus 229 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t-~~~ll 306 (877)
..|..-+. +.+.+..++|+.-|..+.+.|..-= +..--.+.......| +...|...|++.-+....|-..- ...|=
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kg-dta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKG-DTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcc-cHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 34444333 3456667777777777776554311 111111222345566 77777777777766544443331 11111
Q ss_pred --HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC
Q 002814 307 --AVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK 363 (877)
Q Consensus 307 --~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 363 (877)
-.+...|.+++.....+-+...+-+.-...-.+|.-+-.+.|++.+|...|..+...
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 123456777777776666655544444455566666667777777777777776654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.92 E-value=36 Score=39.39 Aligned_cols=102 Identities=12% Similarity=0.049 Sum_probs=66.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 002814 200 ISILGRLGKVDLAKNIFETALNEGYGN---TVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG 276 (877)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 276 (877)
++.+.+.+.+++|+.+.+..... .+ ...++...|..+.-.|++++|-...-+|.. -+..-|-..+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 56667778888888877765432 22 346788899999999999999999999986 3677788777777776
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002814 277 GVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR 311 (877)
Q Consensus 277 g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 311 (877)
+ +...... -+-......+...|..++..|..
T Consensus 437 ~-~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 D-QLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred c-ccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 6 4433222 22221112344455555555544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.71 E-value=17 Score=35.16 Aligned_cols=83 Identities=18% Similarity=0.092 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002814 170 GEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAIS 249 (877)
Q Consensus 170 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 249 (877)
|-|..|+--|..++... |.-+.+|+-+.--+...|+++.|.+.|+...+.++.-+-...|.-| ++---|++.-|.+
T Consensus 79 GL~~LAR~DftQaLai~---P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~ 154 (297)
T COG4785 79 GLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQD 154 (297)
T ss_pred hHHHHHhhhhhhhhhcC---CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHH
Confidence 33444444444444442 3333455555555555556666666555555543322211222111 1223455555555
Q ss_pred HHHHHHh
Q 002814 250 VFNSMKR 256 (877)
Q Consensus 250 ~~~~m~~ 256 (877)
-|...-.
T Consensus 155 d~~~fYQ 161 (297)
T COG4785 155 DLLAFYQ 161 (297)
T ss_pred HHHHHHh
Confidence 5444443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=90.55 E-value=1.7 Score=40.61 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCCH----HHHHHHHHHHHhcCCcchhHHHHHhhccccchHHHHHH
Q 002814 625 EILCILGVFQKMHKLKIKPNV-VTFSAILNACSRCNSF----EDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALS 699 (877)
Q Consensus 625 ~~~~A~~~~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~----~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~ 699 (877)
-+++|+.-|++.+. +.|+. .++.++++||...+.+ .+| ...+++|.+
T Consensus 50 miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A--------------------------~~~F~kA~~ 101 (186)
T PF06552_consen 50 MIEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEA--------------------------EEYFEKATE 101 (186)
T ss_dssp HHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHH--------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHH--------------------------HHHHHHHHH
Confidence 56677777777776 77754 5677777777654321 112 234678889
Q ss_pred HHHHHhhcCCCcchhHHHH
Q 002814 700 LFDEVKLMDSSTASAFYNA 718 (877)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~ 718 (877)
.|++++..+| .|..+..+
T Consensus 102 ~FqkAv~~~P-~ne~Y~ks 119 (186)
T PF06552_consen 102 YFQKAVDEDP-NNELYRKS 119 (186)
T ss_dssp HHHHHHHH-T-T-HHHHHH
T ss_pred HHHHHHhcCC-CcHHHHHH
Confidence 9999999999 44444443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.6 Score=30.25 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCc
Q 002814 646 VTFSAILNACSRCNSFEDASMLLEELRLFDNQ 677 (877)
Q Consensus 646 ~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~ 677 (877)
.+|..++.+|...|++++|...|+++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35777888888888888888888888877775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.05 E-value=3.3 Score=42.25 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 002814 407 YNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA-----DCVSPNLLTYSTL 480 (877)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l 480 (877)
+..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4445555555556666666666655554 44555666666666666666666666555543 3444444444433
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.87 E-value=52 Score=39.51 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKF 397 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (877)
|..|+..|...|+.++|++++.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 67788888888888888888887765
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.86 E-value=3.3 Score=42.18 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 002814 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK-----EGIRPNVVTYNS 549 (877)
Q Consensus 475 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 549 (877)
.++..++..+...|+.+.+.+.++++..... -+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4556677777778888888888888877653 4777888888888888888888888887764 588888887777
Q ss_pred HHHHH
Q 002814 550 IIDAF 554 (877)
Q Consensus 550 li~~~ 554 (877)
.....
T Consensus 233 y~~~~ 237 (280)
T COG3629 233 YEEIL 237 (280)
T ss_pred HHHHh
Confidence 66663
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=89.72 E-value=48 Score=38.93 Aligned_cols=388 Identities=9% Similarity=0.000 Sum_probs=204.1
Q ss_pred chhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002814 139 DVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFET 218 (877)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 218 (877)
...+...++..+.-+.....-..-+..+.+.++|...++++. . ++.+...-.....++...|+.++|.+....
T Consensus 82 ~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~----~---~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~ 154 (644)
T PRK11619 82 AVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSP----E---KPKPVEARCNYYYAKWATGQQQEAWQGAKE 154 (644)
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcC----C---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444444443222211222335556677888887776332 1 244555666778888889998888888777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHH--HHHHHHHhCCCCCCHHHHHHHHHHHHcCC-----------CCHHHHHH
Q 002814 219 ALNEGYGNTVYAFSALISAYGRSGYCQEAI--SVFNSMKRYNLKPNLVTYNAVIDACGKGG-----------VDFKHVVE 285 (877)
Q Consensus 219 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~--~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----------~~~~~a~~ 285 (877)
+-..|.. ....++.++..+.+.|.+.... +=++.+... .+...-..++..+.... .+...+..
T Consensus 155 lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~---~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~ 230 (644)
T PRK11619 155 LWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLERIRLAMKA---GNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVET 230 (644)
T ss_pred HhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHH
Confidence 7655543 4668888888888777654432 222222222 12222223332221000 01111211
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 002814 286 IFDDMLRNGVQPDRITFNSLLAVCS--RGGLWEAARNLFNEMVHRG-IDQD--IFTYNTLLDAICKGAQMDLAFEIMAEM 360 (877)
Q Consensus 286 ~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~~A~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m 360 (877)
++. .+.++...-..++-++. ...+.+.|..++..+.... +.+. ..++..+....+..+...+|.+.++..
T Consensus 231 ~~~-----~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~ 305 (644)
T PRK11619 231 FAR-----TTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDV 305 (644)
T ss_pred Hhh-----ccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhc
Confidence 111 12223322221222222 2456688999988874442 2222 234455554444544467778888776
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 002814 361 PAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAV 440 (877)
Q Consensus 361 ~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 440 (877)
..... |.......+....+.++++.+...+..|.... .-...-.--+..++...|+.++|...|+.+.. ..
T Consensus 306 ~~~~~--~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~--- 376 (644)
T PRK11619 306 IMRSQ--STSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR--- 376 (644)
T ss_pred ccccC--CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---
Confidence 54322 44445555566668999999988888875532 22344455566777778999999999998753 12
Q ss_pred HHHHHHHHHHHcCCHHHH-HH---HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002814 441 TYNALLGGYGKQGKYDEV-RR---MFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALI 516 (877)
Q Consensus 441 ~~~~li~~~~~~g~~~~A-~~---~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 516 (877)
+|..++.+ .+.|..-.- .. .-... +..+. -..-+..+...|+...|...+..+.+. .+......+.
T Consensus 377 ~fYG~LAa-~~Lg~~~~~~~~~~~~~~~~----~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la 446 (644)
T PRK11619 377 GFYPMVAA-QRLGEEYPLKIDKAPKPDSA----LTQGP--EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLA 446 (644)
T ss_pred CcHHHHHH-HHcCCCCCCCCCCCCchhhh----hccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHH
Confidence 23333221 122221000 00 00000 00000 112344556778888888888887764 3455555666
Q ss_pred HHHHHcCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhhcCChhhhH
Q 002814 517 DALCKNGLVESAVSLLDEMTKE-----GIRPNVVTYNSIIDAFGRSATTECTV 564 (877)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~a~ 564 (877)
....+.|..+.++......... .+ |. .|...+..+++.-.++.++
T Consensus 447 ~~A~~~g~~~~ai~~~~~~~~~~~~~~rf-p~--~~~~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 447 RYAFNQQWWDLSVQATIAGKLWDHLEERF-PL--AWNDEFRRYTSGKGIPQSY 496 (644)
T ss_pred HHHHHCCCHHHHHHHHhhchhHHHHHHhC-Cc--chHHHHHHHHHHcCCCHHH
Confidence 6666778777777665543221 11 11 3556666666655565543
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=89.60 E-value=33 Score=36.96 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=32.1
Q ss_pred CchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 002814 138 DDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVK 184 (877)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 184 (877)
+...+..+++. .+.-.+.+..+...+.++|+.+.|.++.++++-
T Consensus 25 Dp~~l~~ll~~---~PyHidtLlqls~v~~~~gd~~~A~~lleRALf 68 (360)
T PF04910_consen 25 DPNALINLLQK---NPYHIDTLLQLSEVYRQQGDHAQANDLLERALF 68 (360)
T ss_pred CHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555544 344567778888889999999999988888764
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.53 E-value=85 Score=41.52 Aligned_cols=153 Identities=13% Similarity=0.162 Sum_probs=85.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
+..+-.+.+.|.+|+-.++.-.............+-.+-..|+..+++|....+...-.. .++ .+ .-|-.....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHHhh
Confidence 344555677788888777762111000111233445555588888888887777764221 122 22 244456677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhCCCHHHHHH
Q 002814 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSL-LAVCSRGGLWEAARN 320 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~A~~ 320 (877)
|++++|...|+.+.+.+.. ...+++-++......+ .+...+-..+-.... ..+....++++ +.+-.+.++++....
T Consensus 1463 g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~-~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQ-HLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhccc-chhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 8888888888888875422 3667776666666666 666666544444332 22222333332 344466677776666
Q ss_pred HHH
Q 002814 321 LFN 323 (877)
Q Consensus 321 ~~~ 323 (877)
.+.
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.42 E-value=0.86 Score=46.44 Aligned_cols=92 Identities=17% Similarity=0.094 Sum_probs=43.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhh
Q 002814 484 YSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECT 563 (877)
Q Consensus 484 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 563 (877)
|.+.|++++|+.+|...+... +-+.+++..-..+|.+..++..|..-.+..+..+ .--...|+.-..+-...|..++|
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 444555555555554444322 1144455444555555555555544444443321 00111344444444445555666
Q ss_pred HHHHHHHhhhhhhh
Q 002814 564 VDDVERDLGKQKES 577 (877)
Q Consensus 564 ~~~~~~~l~~~~~~ 577 (877)
.+.++.+|++.|+.
T Consensus 185 KkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 185 KKDCETVLALEPKN 198 (536)
T ss_pred HHhHHHHHhhCccc
Confidence 66666666665554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=89.41 E-value=30 Score=36.16 Aligned_cols=158 Identities=11% Similarity=0.060 Sum_probs=72.6
Q ss_pred HccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCC---CHHHHHHHHHHHHhc
Q 002814 167 GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE--GYGN---TVYAFSALISAYGRS 241 (877)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~~---~~~~~~~li~~~~~~ 241 (877)
....+.++|+..+...+..-.........+..+..+.++.|.+++++..--..+.. .... -..+|..|.+++-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666665554432111223345666677777777777665432211110 0010 123444455555555
Q ss_pred CCHHHHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhC
Q 002814 242 GYCQEAISVFNSMKRY-NLKPN---LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGV-----QPDRITFNSLLAVCSRG 312 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~-g~~p~---~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~-----~p~~~t~~~ll~~~~~~ 312 (877)
-++.+++.+-..-... |..|. -...-++..+....+ .++++++.|+...+..- -....++..|...|.+.
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls-~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLS-VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHH-HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 5555555554443321 11110 011222334444444 56666666666554211 11123455566666666
Q ss_pred CCHHHHHHHHHHH
Q 002814 313 GLWEAARNLFNEM 325 (877)
Q Consensus 313 g~~~~A~~~~~~m 325 (877)
.++++|.-+..+.
T Consensus 176 ~D~~Kal~f~~kA 188 (518)
T KOG1941|consen 176 KDYEKALFFPCKA 188 (518)
T ss_pred HhhhHHhhhhHhH
Confidence 6666655544443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.02 E-value=24 Score=34.56 Aligned_cols=54 Identities=19% Similarity=0.402 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHH---HH--HHHHcC-CCHHHHHHHHHHHHhcCCcc
Q 002814 625 EILCILGVFQKMHKLKIKPNVVTFSA---IL--NACSRC-NSFEDASMLLEELRLFDNQV 678 (877)
Q Consensus 625 ~~~~A~~~~~~m~~~g~~Pd~~t~~~---ll--~a~~~~-g~~~eA~~~~~~~~~~~~~~ 678 (877)
++.+|+.+|++.....+.-+..-|+. ++ ..|.-+ ++.-.+...+++-...+|.-
T Consensus 169 qY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 169 QYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 67778888888766444433333322 11 122222 44445566666666666643
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.84 E-value=24 Score=34.19 Aligned_cols=180 Identities=19% Similarity=0.139 Sum_probs=91.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHH
Q 002814 207 GKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEI 286 (877)
Q Consensus 207 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~ 286 (877)
|-.+.|+-=|.+.+...+. -+.+||-|.-.+...|+++.|.+.|+...+.+..-+-...|.-|..|. .| ++.-|.+-
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~g-R~~LAq~d 155 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GG-RYKLAQDD 155 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee-cC-chHhhHHH
Confidence 4444455555555543222 367888888888899999999999999988654333334444444443 45 78888877
Q ss_pred HHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC
Q 002814 287 FDDMLRNGVQ-PDRITFNSLLAVCSRGGLWEAARNLFN-EMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN 364 (877)
Q Consensus 287 ~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~A~~~~~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 364 (877)
+.+.-+.... |-...|--++ -..-+..+|..-+. +..+ .|..-|...|-.|.- |++. ...+++++....
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a 226 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKADA 226 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc
Confidence 7777655322 2222232222 22335555554433 3332 243444443333321 1111 011222222110
Q ss_pred CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 365 IS------PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (877)
Q Consensus 365 ~~------pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (877)
-. .=..||--+.+-|...|+.++|..+|+-.+..
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 00 01244555566666666666666666655543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.48 E-value=22 Score=33.33 Aligned_cols=102 Identities=14% Similarity=0.215 Sum_probs=48.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC
Q 002814 284 VEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK 363 (877)
Q Consensus 284 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 363 (877)
.++++.+.+.++.++...+..+++.+.+.|++..... ++..++-+|.......+-.+. +.+..+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3444555566677777777777777777776554333 334444444433332222111 1222222222222221
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 364 NISPNVVTYSTMIDGYAKAGRLDDALNMFSEM 395 (877)
Q Consensus 364 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 395 (877)
=...+..+++.+...|++-+|+.+.+..
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012445555666666666666665543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.43 E-value=0.78 Score=30.31 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHhh
Q 002814 715 FYNALTDMLWHFGQKRGAQLVVLEGK 740 (877)
Q Consensus 715 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 740 (877)
.|+.|+.+|.+.|++++|..++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 37889999999999999999999865
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.29 E-value=29 Score=34.59 Aligned_cols=183 Identities=15% Similarity=0.238 Sum_probs=89.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----C-CCCCCHHHHH
Q 002814 374 TMIDGYAKAGRLDDALNMFSEMKFL---GI--GLDRVSYNTVLSIYAKLGRFEEALLVCKEMES----S-GIRKDAVTYN 443 (877)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~m~~~---g~--~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~~~~~~~~ 443 (877)
.+|..+.+.|++++.++.|++|... .+ .-+..+.|++++..+...+.+.-.+.|+.-.+ . +-+.-..|-.
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 3455555555555555555554321 00 12334456666655555554444444332211 1 0011112334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHH
Q 002814 444 ALLGGYGKQGKYDEVRRMFEQMKADCVS-----------PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG-LKADVVL 511 (877)
Q Consensus 444 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-----------p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~ 511 (877)
.|...|...|.+.+..+++.++....-. .=...|..-|++|....+-.+...+|++.+... -.|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 5566666667777777777666543111 113556777777777777777777777665321 1233333
Q ss_pred HHHHHH-----HHHHcCChHHHHHH-HHHHH---HCCCCCCHHH---HHHHHHHHhhcC
Q 002814 512 YSALID-----ALCKNGLVESAVSL-LDEMT---KEGIRPNVVT---YNSIIDAFGRSA 558 (877)
Q Consensus 512 ~~~li~-----~~~~~g~~~~A~~~-~~~m~---~~g~~p~~~~---~~~li~~~~~~g 558 (877)
. .+|+ ...+.|++++|..- |+... +.| .|...| |..|...+.+.|
T Consensus 230 m-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 230 M-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred H-hHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcC
Confidence 2 2333 23466778777643 33333 233 233332 444555555544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.12 E-value=5 Score=40.77 Aligned_cols=104 Identities=15% Similarity=0.178 Sum_probs=72.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCC
Q 002814 222 EGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY---NLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD 298 (877)
Q Consensus 222 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~ 298 (877)
.|....+.+-..++..-....++++++..+-+++.. -..|+. +-.+.++.|.+- +.++++.++..-++.|+-||
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllky--~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLKY--DPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHcc--ChHHHHHHHhCcchhccccc
Confidence 344445555566666666677888888888777642 112221 222344444444 57888888888888899999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 002814 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHR 328 (877)
Q Consensus 299 ~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 328 (877)
.++++.+|+.+.+.+++.+|.++...|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999998888887777654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.09 E-value=1 Score=29.03 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCc
Q 002814 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQ 677 (877)
Q Consensus 647 t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~ 677 (877)
.+..+..++...|++++|++.|+++.+.+|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4556777778888888888888887776664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.91 E-value=10 Score=34.31 Aligned_cols=78 Identities=18% Similarity=0.068 Sum_probs=57.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 002814 198 AMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK 275 (877)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 275 (877)
.-.....+.|++++|++.|+.+..+-+. -...+.-.|+.+|.+.+++++|+..+++.++..+.--.+-|...+.+++.
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3445566889999999999999876321 23456777889999999999999999999986544334556666666553
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.90 E-value=36 Score=35.24 Aligned_cols=234 Identities=12% Similarity=0.065 Sum_probs=125.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHchhCCCCCCHHHH
Q 002814 297 PDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQM----DLAFEIMAEMPAKNISPNVVTY 372 (877)
Q Consensus 297 p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~pd~~~~ 372 (877)
+|.......+..+...|.. ++...+..+.+. +|...-...+.++++.|+. +++..++..+... .+|...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 3444555555555555542 233333333332 3555556666666666652 4566666655322 2355555
Q ss_pred HHHHHHHHHcCCH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 373 STMIDGYAKAGRL-----DDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (877)
Q Consensus 373 ~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 447 (877)
...+.++...+.. ..+.+.+..+.. .++..+-...+.++.+.++ +++...+-.+.+ .+|..+-..-+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 5555555444321 223333333332 2355555566666666665 455666655554 234445445555
Q ss_pred HHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH
Q 002814 448 GYGKQG-KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (877)
Q Consensus 448 ~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 526 (877)
++++.+ +...+...+..+.. .+|..+-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 555543 23456666666553 3466666777777777776 45666665655543 2 234566777777774
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 002814 527 SAVSLLDEMTKEGIRPNVVTYNSIIDAFG 555 (877)
Q Consensus 527 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 555 (877)
+|+..+..+.+. .||..+-...+.+|.
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 677777777763 346666655555553
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.48 E-value=5.6 Score=37.94 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=38.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALN 221 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (877)
.+..+...|.+.|+++.|++.|.++............++-.+|+.....+++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445666677777777777777776654333333334555666666666777666666655543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.47 E-value=1 Score=28.96 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHhcCchhhHHHHHHHhhhh
Q 002814 714 AFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 714 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (877)
.+|..++.+++..|++++|.+.+.++...
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46888999999999999999999988754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.06 E-value=1.1 Score=29.63 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 002814 647 TFSAILNACSRCNSFEDASMLLEELR 672 (877)
Q Consensus 647 t~~~ll~a~~~~g~~~eA~~~~~~~~ 672 (877)
+|+.|..+|.+.|++++|.++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999865
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.94 E-value=4.8 Score=38.16 Aligned_cols=94 Identities=16% Similarity=0.070 Sum_probs=45.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
+.+.+...+++++|..-+.+.+.......-...+-..|.+.....|.+|+|..+++.....+. .......-.+.+...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 445555566666666666665543211111111223344555555666666666655543321 222233344555555
Q ss_pred CCHHHHHHHHHHHHhC
Q 002814 242 GYCQEAISVFNSMKRY 257 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~ 257 (877)
|+-++|+.-|++..+.
T Consensus 173 g~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 173 GDKQEARAAYEKALES 188 (207)
T ss_pred CchHHHHHHHHHHHHc
Confidence 6666666666555543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.93 E-value=0.73 Score=30.02 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=12.2
Q ss_pred CChHHHHHHHHHHHHhcCChHHHH
Q 002814 190 NDQGKLASAMISILGRLGKVDLAK 213 (877)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~ 213 (877)
|.+..+|..+..+|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344445555555555555555543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.64 E-value=27 Score=32.34 Aligned_cols=93 Identities=16% Similarity=0.084 Sum_probs=49.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH
Q 002814 202 ILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK 281 (877)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 281 (877)
.-.+.++.+++..+++.+.-..+. ....-..-...+.+.|++.+|+.+|+++...+ |.......|+..|.... .-.
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~-~D~ 94 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYAL-GDP 94 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHc-CCh
Confidence 334566777777777777654322 12222223344667788888888888876543 33344445555554443 222
Q ss_pred HHHHHHHHHHHCCCCCC
Q 002814 282 HVVEIFDDMLRNGVQPD 298 (877)
Q Consensus 282 ~a~~~~~~m~~~g~~p~ 298 (877)
.-..+-+++...+..|+
T Consensus 95 ~Wr~~A~evle~~~d~~ 111 (160)
T PF09613_consen 95 SWRRYADEVLESGADPD 111 (160)
T ss_pred HHHHHHHHHHhcCCChH
Confidence 33334444555543333
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.42 E-value=16 Score=34.83 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=42.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 447 GGYGKQGKYDEVRRMFEQMKADCVSPN-----LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK 521 (877)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 521 (877)
+-+.+.|++++|..-|...++.. ++. .+.|..-..++.+.+.++.|+.-..+.++.+.. .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 34556667777776666666642 211 122333334455555555555555555544311 11111122334445
Q ss_pred cCChHHHHHHHHHHHH
Q 002814 522 NGLVESAVSLLDEMTK 537 (877)
Q Consensus 522 ~g~~~~A~~~~~~m~~ 537 (877)
..++++|++-|+++++
T Consensus 181 ~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILE 196 (271)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5555555555555554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.41 E-value=9.7 Score=36.31 Aligned_cols=59 Identities=17% Similarity=0.225 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD--RVSYNTVLSIYAKLGRFEEALLVCKEM 430 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m 430 (877)
+..+.+.|++.|+.++|++.|.++.+....+. ...+-.+|......+++..+.....+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44444445555555555555555444322222 122344444444555555554444433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.34 E-value=67 Score=38.83 Aligned_cols=18 Identities=11% Similarity=-0.143 Sum_probs=10.9
Q ss_pred HHhcCChHHHHHHHHHHH
Q 002814 203 LGRLGKVDLAKNIFETAL 220 (877)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~ 220 (877)
+.+.+++++|.++...|.
T Consensus 1007 ~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 1007 SIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred HHhhccHHHHHHHHHHHh
Confidence 445566666666666665
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.27 E-value=7.8 Score=35.72 Aligned_cols=75 Identities=20% Similarity=0.203 Sum_probs=50.6
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHH-hhccccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCc
Q 002814 653 NACSRCNSFEDASMLLEELRLFDNQVYGVAHGL-LMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQ 728 (877)
Q Consensus 653 ~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 728 (877)
+.-.+.++.+++..+++-++...|+...+-..- ......|+|.+|+.+|+++.+..+ .....---++.+|...|+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~-~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAP-GFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHHcCC
Confidence 344577899999999999998888766542221 112267899999999999876665 333333445556665655
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.14 E-value=36 Score=33.42 Aligned_cols=85 Identities=6% Similarity=0.038 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHC--CCCCCHHH---HHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHH---HHHhh----cc-cc
Q 002814 625 EILCILGVFQKMHKL--KIKPNVVT---FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVA---HGLLM----GY-RD 691 (877)
Q Consensus 625 ~~~~A~~~~~~m~~~--g~~Pd~~t---~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~---~~l~~----~~-~~ 691 (877)
+++.|+..|++.-+. |-.-+... +.-+..--+..+++++|+++|++.....-++...- .++++ .. -.
T Consensus 129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~ 208 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK 208 (288)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc
Confidence 455566666655431 21112221 22222233466889999999999764322221111 11111 11 22
Q ss_pred chHHHHHHHHHHHhhcCC
Q 002814 692 NIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 692 ~~~~~A~~~~~~~~~~~~ 709 (877)
.+.-.|...+++-.+++|
T Consensus 209 ~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDP 226 (288)
T ss_pred ccHHHHHHHHHHHHhcCC
Confidence 444445555566667777
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.10 E-value=45 Score=34.52 Aligned_cols=150 Identities=13% Similarity=0.047 Sum_probs=85.6
Q ss_pred cCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHHcCCHHH
Q 002814 347 GAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYN----TVLSIYAKLGRFEE 422 (877)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~----~li~~~~~~g~~~~ 422 (877)
.|+..+|-..++++.+. .+.|...++-.=++|.-.|+.+.-...++++.-. ..+|...|. ...-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45666666666666654 3346666666666666777776666666666543 133332222 22233446677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-C---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 002814 423 ALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP-N---LLTYSTLIDVYSKGGLYKEAMQIFR 498 (877)
Q Consensus 423 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~---~~t~~~li~~~~~~g~~~~A~~~~~ 498 (877)
|.+.-++..+.+ +.|...-.++...+...|+..++.++..+-... ..- + ...|--..-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 777777776665 566666677777777777777777766553321 000 0 1112122223445577788887776
Q ss_pred HH
Q 002814 499 EF 500 (877)
Q Consensus 499 ~m 500 (877)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 53
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.09 E-value=41 Score=33.97 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCHHHHHHHHH----HHHHCCCCCCHHHHHHHH-HHHHHcCChHHHHHHHHHHH
Q 002814 479 TLIDVYSKGGLYKEAMQIFR----EFKQAGLKADVVLYSALI-DALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~----~m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~ 536 (877)
-+|..+.+.|.+.+|+.+.. ++++..-+++.++...+= .+|....++.++..-+...+
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaAr 192 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAAR 192 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHH
Confidence 46777778888888876543 344444445544433332 24444455555544444443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.66 E-value=11 Score=38.41 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=63.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002814 434 GIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC---VSPN--LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD 508 (877)
Q Consensus 434 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 508 (877)
|......+...++..-....+++.+...+-++...- ..++ ..+|-.++ ..-+.++++.++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 334445555556666566667777777766665431 1112 22332222 23356677777777777788888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002814 509 VVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (877)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (877)
..+++.+|+.+.+.+++.+|..+...|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888888877777666543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=85.22 E-value=66 Score=37.69 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCC
Q 002814 229 YAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGV------DFKHVVEIFDDMLRNGV 295 (877)
Q Consensus 229 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------~~~~a~~~~~~m~~~g~ 295 (877)
.+|- +|-.+.|+|++++|.++..+.... .......+...+..|..... .-++...-|.+..+...
T Consensus 113 p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 113 PIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp EHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 3554 566777899999999988555432 23344556667777765420 12455566666665533
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.32 E-value=1.8 Score=27.94 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 511 LYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.28 E-value=17 Score=40.53 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=51.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 002814 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAA 318 (877)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 318 (877)
.+.|+++.|.++..+.. +..-|..|.++....+ ++..|.+.|.+... |..|+-.+...|+-+..
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~-~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAG-ELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcc-cchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 35566666655554432 4455666666666666 56666666555432 33444455555555544
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 002814 319 RNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEM 360 (877)
Q Consensus 319 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 360 (877)
..+-....+.|.. | . -.-+|...|+++++.+++.+-
T Consensus 712 ~~la~~~~~~g~~-N-~----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGKN-N-L----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhccc-c-h----HHHHHHHcCCHHHHHHHHHhc
Confidence 4444444444422 1 1 122344556666666665543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.97 E-value=57 Score=33.82 Aligned_cols=121 Identities=16% Similarity=-0.015 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHchhCCCCCCHHHHHHHH
Q 002814 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA-QMDLAFEIMAEMPAKNISPNVVTYSTMI 376 (877)
Q Consensus 298 ~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~~~~~li 376 (877)
+..+-...+.++.+.++ +++...+-.+.+. +|..+-..-+.++.+.+ ....+...+..+... +|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHH
Confidence 33333344444444444 3344444444432 23334444444444332 122344444443332 2444444445
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMES 432 (877)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 432 (877)
.++.+.|+ ..|+..+.+..+.+ + .....+.++...|.. +|...+..+.+
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 55555544 23444444333322 1 122334444444443 34444444443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.88 E-value=53 Score=33.43 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 478 STLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
+.....|..+|.+.+|.++.++.+..+ +.+...|-.|+..+...|+--.|.+-+++|.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344456677777777777777766654 3466666677777777777666766666664
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.82 E-value=41 Score=34.23 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=27.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 412 SIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM 465 (877)
Q Consensus 412 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 465 (877)
..|..+|.+.+|.++.++.+..+ +.+...|-.|+..|...|+--.|.+.++++
T Consensus 287 ~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 44555555555555555555444 444455555555555555544444444443
|
|
| >KOG0917 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.27 E-value=9.5 Score=37.59 Aligned_cols=20 Identities=55% Similarity=0.886 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 002814 61 NAPKPAATSTTVAPNPKPFH 80 (877)
Q Consensus 61 ~~~~p~~~~~~~~~~~~~~~ 80 (877)
+.|.|..+++...+.+.++.
T Consensus 249 nnP~p~ySst~~ap~ps~f~ 268 (338)
T KOG0917|consen 249 NNPAPVYSSTGVAPNPSTFF 268 (338)
T ss_pred CCCCCCCCCCCCCCCCCCCC
Confidence 33444444444444444443
|
|
| >KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.24 E-value=11 Score=38.77 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 002814 226 NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG 276 (877)
Q Consensus 226 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 276 (877)
.....+..++.+|+.-.-.++|+..+++..+.|+- +...|---.+.+.+.
T Consensus 297 ~~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i-~l~~yLr~VR~lsRe 346 (365)
T KOG2391|consen 297 CTAPLYKQILECYALDLAIEDAIYSLGKSLRDGVI-DLDQYLRHVRLLSRE 346 (365)
T ss_pred ccchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCee-eHHHHHHHHHHHHHH
Confidence 34556666777777666677777777777766654 555555444544443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=83.17 E-value=1e+02 Score=36.19 Aligned_cols=404 Identities=14% Similarity=0.124 Sum_probs=201.0
Q ss_pred HHHHHHH-ccCCHHHHHHHHHHHHHccccCCCh---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CCHHHHH
Q 002814 161 FLLRELG-NRGEWSKAIQCFAFAVKREERKNDQ---GKLASAMISILGRLGKVDLAKNIFETALNEGYG----NTVYAFS 232 (877)
Q Consensus 161 ~ll~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~----~~~~~~~ 232 (877)
.+...|. ...++++|...+++++.......-. ......++..+.+.+... |....++.++.--. .-...|.
T Consensus 64 ~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~fr 142 (608)
T PF10345_consen 64 RLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFR 142 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHH
Confidence 3555555 5778999999999887654321111 122345567777777666 99988887663111 1223333
Q ss_pred HH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCC---------CC
Q 002814 233 AL-ISAYGRSGYCQEAISVFNSMKRYN---LKPNLVTYNAVIDACG--KGGVDFKHVVEIFDDMLRNGV---------QP 297 (877)
Q Consensus 233 ~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~--~~g~~~~~a~~~~~~m~~~g~---------~p 297 (877)
-+ +..+...+++..|++.++.+...- ..|-..++-.++.+.. ..+ ..+++.+..+.+..... .|
T Consensus 143 ll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~-~~~d~~~~l~~~~~~~~~~q~~~~~~~~ 221 (608)
T PF10345_consen 143 LLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRG-SPDDVLELLQRAIAQARSLQLDPSVHIP 221 (608)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhhcccCCCCCcH
Confidence 33 333334479999999998886532 3344555555665543 334 46677777777643211 23
Q ss_pred CHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHc---C--C---C----------------------CCHHHH--------
Q 002814 298 DRITFNSLLAVCS--RGGLWEAARNLFNEMVHR---G--I---D----------------------QDIFTY-------- 337 (877)
Q Consensus 298 ~~~t~~~ll~~~~--~~g~~~~A~~~~~~m~~~---g--~---~----------------------~~~~~~-------- 337 (877)
-..+|..+++.++ ..|++..+...++++.+. . . + +..+.|
T Consensus 222 qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~ 301 (608)
T PF10345_consen 222 QLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYA 301 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHH
Confidence 4566777776654 567766766665554321 0 0 0 111111
Q ss_pred -HHHHHH--HHHcCCHHHHHHHH-------HHch-hCCCCC--------CHHHHHHHHHH---------HHHcCCHHHHH
Q 002814 338 -NTLLDA--ICKGAQMDLAFEIM-------AEMP-AKNISP--------NVVTYSTMIDG---------YAKAGRLDDAL 389 (877)
Q Consensus 338 -~~li~~--~~~~g~~~~A~~~~-------~~m~-~~g~~p--------d~~~~~~li~~---------~~~~g~~~~A~ 389 (877)
.-++.+ ++..+..++|.+.+ ++.. .....+ +...|...+.. .+-.+++..|.
T Consensus 302 L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~ 381 (608)
T PF10345_consen 302 LVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKAT 381 (608)
T ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 112222 23444444554444 4444 111111 11223222222 34478899999
Q ss_pred HHHHHHHHCCC-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHH----HHHH
Q 002814 390 NMFSEMKFLGI-GLD-------RVSYNTVLSIYAKLGRFEEALLVCK--------EMESSGIRKDAVTYNAL----LGGY 449 (877)
Q Consensus 390 ~~~~~m~~~g~-~pd-------~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~~~~~~~~~l----i~~~ 449 (877)
..+++|..... .|+ ...+....-.+-..|+.+.|+..|. .....+...+..++..| |.-+
T Consensus 382 ~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~ 461 (608)
T PF10345_consen 382 QELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQY 461 (608)
T ss_pred HHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHh
Confidence 99998875421 111 2222233334456799999999997 44455544444444332 1112
Q ss_pred HHcCCHHH--HHHHHHHHHHC-C--CCCCHHHHHHH-HHHHHhcCC--HHHHHHHHHHHH-----HCCC-CCCHHHHHHH
Q 002814 450 GKQGKYDE--VRRMFEQMKAD-C--VSPNLLTYSTL-IDVYSKGGL--YKEAMQIFREFK-----QAGL-KADVVLYSAL 515 (877)
Q Consensus 450 ~~~g~~~~--A~~~~~~m~~~-g--~~p~~~t~~~l-i~~~~~~g~--~~~A~~~~~~m~-----~~g~-~p~~~~~~~l 515 (877)
......++ +.++++.+... . ...+..++..+ +.++..... ..++...+.+.. ..+. ..-..+++.|
T Consensus 462 ~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm 541 (608)
T PF10345_consen 462 ESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLM 541 (608)
T ss_pred hcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 22222333 67777766542 1 11233344444 444432221 224443333222 2111 1112233333
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC-CCCCC--HHHHHH-----HHHHHhhcCChhhhHHHH
Q 002814 516 IDALCKNGLVESAVSLLDEMTKE-GIRPN--VVTYNS-----IIDAFGRSATTECTVDDV 567 (877)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~-g~~p~--~~~~~~-----li~~~~~~g~~~~a~~~~ 567 (877)
...+. .|+..+..+........ .-.|| ...|.. +.+.+...|+.++|....
T Consensus 542 ~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~ 600 (608)
T PF10345_consen 542 GHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEAR 600 (608)
T ss_pred HHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 33333 68877765554443321 11122 335643 333467778888876543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.03 E-value=45 Score=34.23 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=10.9
Q ss_pred ccCCHHHHHHHHHHHHH
Q 002814 168 NRGEWSKAIQCFAFAVK 184 (877)
Q Consensus 168 ~~g~~~~A~~~~~~~~~ 184 (877)
..|++..|++.+-.++.
T Consensus 385 SaGDy~~AiETllTAI~ 401 (498)
T KOG4849|consen 385 SAGDYKGAIETLLTAIQ 401 (498)
T ss_pred ccccchhHHHHHHHHHH
Confidence 45777777776655543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.82 E-value=2.1 Score=29.04 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHhcCchhhHHHHHHHhhh
Q 002814 714 AFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (877)
Q Consensus 714 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (877)
..++.|+.+|...|++++|..++.++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4688999999999999999999988764
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.55 E-value=58 Score=32.92 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=13.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 002814 408 NTVLSIYAKLGRFEEALLVCK 428 (877)
Q Consensus 408 ~~li~~~~~~g~~~~A~~~~~ 428 (877)
.-++..+.+.|.+.+|+.+..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHH
Confidence 345666677777777766543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.12 E-value=2.2 Score=27.40 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 002814 647 TFSAILNACSRCNSFEDASMLLEELRLFDN 676 (877)
Q Consensus 647 t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~ 676 (877)
+|..+...|...|++++|.+.|++..+.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 466777888888888888888888876655
|
... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=81.67 E-value=80 Score=33.87 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=31.1
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 002814 270 IDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR 328 (877)
Q Consensus 270 l~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 328 (877)
..+..+.| +++...++....... .++...|..+... +.++++++...++.+...
T Consensus 5 ~eaaWrl~-~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 5 AEAAWRLG-DWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHhcC-ChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 45566677 777744444433321 2344455544443 778888888777776653
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.34 E-value=68 Score=32.85 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHH
Q 002814 439 AVTYNALLGGYGKQGKYDEVR 459 (877)
Q Consensus 439 ~~~~~~li~~~~~~g~~~~A~ 459 (877)
..+|.-|+.+++..|+.+..+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 456777888888888776543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=80.44 E-value=3.2 Score=26.64 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhcCchhhHHHHHHHhhhh
Q 002814 714 AFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 714 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (877)
.+|..++.+|...|++++|...+.++.+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36888999999999999999999988754
|
... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.44 E-value=7.5 Score=39.94 Aligned_cols=91 Identities=16% Similarity=0.076 Sum_probs=60.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
-.+.|.++|.|++|+.+|...+... +.++.++..-..+|.+..+|..|..=...++..+-. -+.+|..-+.+-...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~---P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY---PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC---CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHH
Confidence 4566889999999999999988875 345567778888899999999888777777654211 123333333333344
Q ss_pred CCHHHHHHHHHHHHh
Q 002814 242 GYCQEAISVFNSMKR 256 (877)
Q Consensus 242 g~~~~A~~~~~~m~~ 256 (877)
|...+|.+-++..++
T Consensus 179 g~~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLA 193 (536)
T ss_pred hhHHHHHHhHHHHHh
Confidence 455555555555444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 877 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 5e-06 | ||
| 4g23_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 1e-04 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
| >pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 4e-23
Identities = 28/216 (12%), Positives = 63/216 (29%), Gaps = 4/216 (1%)
Query: 286 IFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAIC 345
+ D + P LL + + + +
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 346 KGAQMDLAFEI---MAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGL 402
Q+ LA + K + Y+ ++ G+A+ G + + + +K G+
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 403 DRVSYNTVLSIYAKLGRFEEALLVC-KEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRM 461
D +SY L + + + C ++M G++ A+ LL + V ++
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 462 FEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIF 497
P + S L+ ++
Sbjct: 259 KPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH 294
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 103 bits (256), Expect = 1e-22
Identities = 34/279 (12%), Positives = 82/279 (29%), Gaps = 12/279 (4%)
Query: 351 DLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTV 410
+A + SP + ++ LD + + +
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 411 LSIYAKLGRFEEA---LLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467
+ A L+V YNA++ G+ +QG + E+ + +K
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 468 DCVSPNLLTYSTLIDVYSKGGLYKEAMQ-IFREFKQAGLKADVVLYSALIDALCKNGLVE 526
++P+LL+Y+ + + ++ + Q GLK + + L+ + +++
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 527 SAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQ 586
+ + + P V + ++ + D K +
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLR--------DVYAKDGRVSYPKLHLPLKTLQCLFE 305
Query: 587 DDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQE 625
++ A R ++ E K R +
Sbjct: 306 KQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQ 344
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 90.3 bits (222), Expect = 1e-18
Identities = 26/166 (15%), Positives = 61/166 (36%), Gaps = 3/166 (1%)
Query: 184 KREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGN---TVYAFSALISAYGR 240
+ + + Q + A ++ LA ++ + T+ ++A++ + R
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 241 SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRI 300
G +E + V +K L P+L++Y A + G+ D + + M + G++ +
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
Query: 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK 346
LL+ R + +A + + LL +
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 85.6 bits (210), Expect = 4e-17
Identities = 20/211 (9%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 205 RLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLV 264
RL +A + + + L+ + + L
Sbjct: 69 RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQ 128
Query: 265 TYNAVIDACGKGGVDFK---HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNL 321
A C H++ + + +N+++ +R G ++ +
Sbjct: 129 RLLAFFKCCLLTD-QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYV 187
Query: 322 FNEMVHRGIDQDIFTYNTLLDAICK-GAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYA 380
+ G+ D+ +Y L + + + +M + + + + ++
Sbjct: 188 LFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247
Query: 381 KAGRLDDALNMFSEMKFLGIGLDRVSYNTVL 411
+A L + V+ + +L
Sbjct: 248 RATVLKAVHKVKPTFSLPPQLPPPVNTSKLL 278
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.6 bits (164), Expect = 1e-11
Identities = 73/552 (13%), Positives = 159/552 (28%), Gaps = 160/552 (28%)
Query: 279 DFKHVVEI---------FDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG 329
D K V ++ D ++ D ++ L L + + V
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIM---SKDAVSGTLRLFWT----LLSKQEEMVQKFVEEV 86
Query: 330 IDQDIFTYNTLLDAI---CKGAQMDLAFEIMAEMPAKNISPNVVTYS-TMIDGYAKAGRL 385
+ + Y L+ I + M I N + Y+ + + Y K L
Sbjct: 87 LRIN---YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK---L 140
Query: 386 DDALNMFSEMKFL------GIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDA 439
AL K + G G T + AL VC +
Sbjct: 141 RQALLELRPAKNVLIDGVLGSG------KTWV-----------ALDVCLSYKVQCKMDFK 183
Query: 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADC--VSPNLLTYSTLIDVYSKGGLYKEAMQ-- 495
+ + L + + E ++ + PN +++ D S L ++Q
Sbjct: 184 IFWLNL-------KNCNSPETVLEMLQKLLYQIDPN---WTSRSDHSSNIKLRIHSIQAE 233
Query: 496 ---IF--REFKQAGLKADVVLYSALIDAL---CKNGLVESAVSLLDEMTKEGIRPNVVT- 546
+ + ++ L V + +A CK +L + T
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK---------IL-----------LTTR 273
Query: 547 YNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMC-SQDDKDV-QEAGRTDNQIIKV 604
+ + D + TT ++D L E +L +D+ +E T+ + + +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 605 FGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDA 664
+ + ++ + ++ ++ K + I+ +
Sbjct: 333 IAESI--------RDGLATWD------NWKHVNCDK-------LTTIIESS--------- 362
Query: 665 SMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDE-VKLMDSSTASAFYNALTDML 723
L L + + + LS+F + L+ ++
Sbjct: 363 ---LNVLEPAEYRKM---------FDR------LSVFPPSAHIP--------TILLS-LI 395
Query: 724 WHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLH-----LMSSGAARAMVHAWLLNIHSI 778
W K +VV + + + E ES + + L +H +++ ++I
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 779 V--FEGHELPKL 788
F+ +L
Sbjct: 456 PKTFDSDDLIPP 467
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 2e-09
Identities = 60/406 (14%), Positives = 114/406 (28%), Gaps = 37/406 (9%)
Query: 219 ALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKR---YNLKPNLVTYN---AVIDA 272
A A A GY Q+ R LV + A I A
Sbjct: 34 APRRRAAQPSDASPAAQVDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVA 93
Query: 273 CGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQ 332
+ V + ++ P+ + + G L + RG
Sbjct: 94 LSQHPAALGTVAVTYQHIIT--ALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPL 151
Query: 333 DIFTYNTLLDAICKGAQMDLA---FEIMAEMPAKNISP-NVVTYSTMIDGYAKAGRLDDA 388
+ T + A G A N++P VV ++ G +
Sbjct: 152 QLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRL 211
Query: 389 LNMFSEMKFLGIGLDR---VSYNTVLSIYAKLGRFEEALLVCKEMESSGIR-KDAVTYNA 444
L + + GL V+ + L + L V + + G+ V +
Sbjct: 212 LPVLCQ----AHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQ--AHGLPPDQVVAIAS 265
Query: 445 LLGGYGKQGKYDEVRRMFEQMKADCVSPNL-LTYSTLIDVYSKGGLYKEAMQIFREFKQA 503
+GG + + Q ++P+ + ++ + + + +
Sbjct: 266 NIGGKQALETVQRLLPVLCQAHG--LTPDQVVAIASHGGGKQALETVQRLLPVLC--QAH 321
Query: 504 GLKAD-VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSATTE 561
GL D VV ++ V+ + +L + G+ P+ VV S T +
Sbjct: 322 GLTPDQVVAIASHDGGKQALETVQRLLPVLCQAH--GLTPDQVVAIASNGGGKQALETVQ 379
Query: 562 CTVDDVERDLGKQKESANLDAMCS----QDDKDVQEAGRTDNQIIK 603
+ + + G + A+ S Q + VQ Q
Sbjct: 380 RLLPVLCQAHGLT--PDQVVAIASNGGKQALETVQRLLPVLCQAHG 423
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 7e-05
Identities = 44/390 (11%), Positives = 109/390 (27%), Gaps = 43/390 (11%)
Query: 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFE 217
D + G + + + DQ ++ L V +
Sbjct: 394 DQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLC 453
Query: 218 TA--LNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK 275
L V A ++ Q+ + V + + +T + V+
Sbjct: 454 QTHGLTPAQ---VVAIASHDGGKQALETVQQLLPVLC-------QAHGLTPDQVVAIASN 503
Query: 276 GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG------GLWEAARNLFNEMVHRG 329
G K + +L Q +T + ++A+ S G + + + G
Sbjct: 504 IGG--KQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH--G 559
Query: 330 ID-QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTYSTMIDGYAKAGRLDD 387
+ + + + ++ + A ++ VV ++ I G +
Sbjct: 560 LTPDQVVAIASNGGGKQALETVQRLLPVLCQ--AHGLTQVQVVAIASNIGGKQALETVQR 617
Query: 388 ALNMFSEMKFLGIGLDRV-SYNTVLSIYAKLGRFEEALLV-CKEMESSGIRKDAVTYNAL 445
L + + G+ +V + + L + L V C+ + V +
Sbjct: 618 LLPVLC--QAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT--PDQVVAIASN 673
Query: 446 LGGYGKQGKYDEVRRMFEQMKADCVSPN-LLTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504
GG + + Q A ++ ++ ++ + + + +
Sbjct: 674 GGGKQALETVQRLLPVLCQ--AHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQ----- 726
Query: 505 LKADVVLYSALIDALCKNGLVESAVSLLDE 534
L + A+ NG + A+ +
Sbjct: 727 ---AHGLTPDQVVAIASNGGGKQALETVQR 753
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 3e-07
Identities = 44/295 (14%), Positives = 84/295 (28%), Gaps = 21/295 (7%)
Query: 206 LGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVT 265
+G N + V L AY + P L
Sbjct: 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSA----PELQA 67
Query: 266 YNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVC-SRGGLWEAARNLFNE 324
+ +V D + V TF + A +AA ++
Sbjct: 68 VRMFAEYLASHS-RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ 126
Query: 325 MVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNI-SPNVVTYSTMIDGYAKAG 383
+ + + K ++DLA + + +M ++ + + + A
Sbjct: 127 G------DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 180
Query: 384 RLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYN 443
+L DA +F EM + N + + GR+E A V +E T
Sbjct: 181 KLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLI 238
Query: 444 ALLGGYGKQGKYDE-VRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIF 497
L+ GK E R Q+K + + + + +K + + +
Sbjct: 239 NLVVLSQHLGKPPEVTNRYLSQLKD--AHRS---HPFIKEYRAKENDFDRLVLQY 288
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 4e-07
Identities = 30/186 (16%), Positives = 66/186 (35%), Gaps = 9/186 (4%)
Query: 354 FEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVL-S 412
+ ++ + + +P + + A R D + + + ++ + S
Sbjct: 50 YGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAAS 109
Query: 413 IYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM-KADCVS 471
IY + AL + +S + A+T LL K + D R+ ++M D +
Sbjct: 110 IYFYDQNPDAALRTLHQGDS--LECMAMTVQILL----KLDRLDLARKELKKMQDQDEDA 163
Query: 472 PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSL 531
+ + + + G ++A IF+E ++L + G E+A +
Sbjct: 164 TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGV 222
Query: 532 LDEMTK 537
L E
Sbjct: 223 LQEALD 228
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 45/363 (12%), Positives = 101/363 (27%), Gaps = 35/363 (9%)
Query: 157 DDYTFLLRELGN----RGEWSKAIQCFAFAVKREERKNDQGKLASA---MISILGRLGKV 209
Y L+ GN +++AI+ + +A++ + + G +
Sbjct: 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL------DPNEPVFYSNISACYISTGDL 75
Query: 210 DLAKNIFETA--LNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYN 267
+ A + + A SA G +A+ + +
Sbjct: 76 EKVIEFTTKALEIKPDH---SKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEP 132
Query: 268 AVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR---------GGLWEAA 318
+ K + + D+ + V P + S + ++ A
Sbjct: 133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTA 192
Query: 319 RNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTYSTMID 377
L ++ + + + + + + + A + N +
Sbjct: 193 YALLSD-ALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGI 251
Query: 378 GYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK 437
+ L DA + + + + SY + A +E ++ +
Sbjct: 252 FHFLKNNLLDAQVLLQ--ESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PE 308
Query: 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL-LTYSTLIDVYSKGGLYKEAMQI 496
TY Y Y + F+ KA ++P Y L + K G + E+
Sbjct: 309 YPPTYYHRGQMYFILQDYKNAKEDFQ--KAQSLNPENVYPYIQLACLLYKQGKFTESEAF 366
Query: 497 FRE 499
F E
Sbjct: 367 FNE 369
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 27/206 (13%), Positives = 58/206 (28%), Gaps = 31/206 (15%)
Query: 362 AKNISPN-----VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR---VSYNTVLSI 413
K +SP+ V + + A ++A+ + I LD V Y+ + +
Sbjct: 13 LKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQY----AIELDPNEPVFYSNISAC 68
Query: 414 YAKLGRFEEALLVCKEMESSGIR---KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCV 470
Y G E+ + + + + G + + +
Sbjct: 69 YISTGDLEKVIEFTTKA----LEIKPDHSKALLRRASANESLGNFTDAMFDL---SVLSL 121
Query: 471 SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVS 530
+ + S I+ + L K+AM++ E L N + S
Sbjct: 122 NGDFDGAS--IEPMLERNLNKQAMKVLNENLSK-------DEGRGSQVLPSNTSLASFFG 172
Query: 531 LLDEMTKEGIRPNVVTYNSIIDAFGR 556
+ D + Y++
Sbjct: 173 IFDSHLEVSSVNTSSNYDTAYALLSD 198
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 7e-07
Identities = 45/381 (11%), Positives = 99/381 (25%), Gaps = 37/381 (9%)
Query: 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG 225
+ + A Q ++ L V + A
Sbjct: 82 KQALETVQRLLPVLCQAH---GLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH-GLTP 137
Query: 226 NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVE 285
V A ++ Q + V + + L P V A + + ++
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLC--QAHGLTPEQVVAIASNGGGKQALETVQRLLP 195
Query: 286 IFDDMLRNGVQPDRI-TFNSLLAVCSRGGLWEAARNLFNEMVHRGID-QDIFTYNTLLDA 343
+ + P ++ S + + + G+ Q + +
Sbjct: 196 VLCQAHG--LTPQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASN--G 249
Query: 344 ICKGAQMDLAFEIMAEMPAKNISPN-VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGL 402
K A + + A ++P VV ++ G + L + + GL
Sbjct: 250 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQ----AHGL 305
Query: 403 DR---VSYNTVLSIYAKLGRFEEALLVCKEMESSGIR---KDAVTYNALLGGYGKQGKYD 456
V+ + L + L V + + V + GG
Sbjct: 306 TPQQVVAIASNGGGKQALETVQRLLPVLCQA----HGLTPQQVVAIASHDGGKQALETVQ 361
Query: 457 EVRRMFEQMKADCVSPNL-LTYSTLIDVYSKGGLYKEAMQIFREFKQA-GLK-ADVVLYS 513
+ + Q A ++P + ++ + + QA GL VV +
Sbjct: 362 RLLPVLCQ--AHGLTPEQVVAIASNGGGKQALETVQRLLP---VLCQAHGLTPEQVVAIA 416
Query: 514 ALIDALCKNGLVESAVSLLDE 534
+ V+ + +L +
Sbjct: 417 SHDGGKQALETVQRLLPVLCQ 437
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 25/180 (13%), Positives = 56/180 (31%), Gaps = 17/180 (9%)
Query: 362 AKNISPN-VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR---VSYNTVLSIYAKL 417
N++P VV ++ G + L + + GL V+ + L
Sbjct: 64 PLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQ----AHGLTPQQVVAIASHDGGKQAL 119
Query: 418 GRFEEALLV-CKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLL- 475
+ L V C+ + + V + GG + + Q A ++P +
Sbjct: 120 ETVQRLLPVLCQAHGLT--PEQVVAIASHDGGKQALETVQALLPVLCQ--AHGLTPEQVV 175
Query: 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD-VVLYSALIDALCKNGLVESAVSLLDE 534
++ + + + + GL VV ++ V+ + +L +
Sbjct: 176 AIASNGGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 233
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 37/314 (11%), Positives = 78/314 (24%), Gaps = 41/314 (13%)
Query: 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETA--LNEG 223
+ + A Q ++ L V + A L
Sbjct: 184 KQALETVQRLLPVLCQAH---GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 240
Query: 224 YGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLV-TYNAVIDACGKGGV---- 278
V A ++ Q + V + + L P V G
Sbjct: 241 Q---VVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQVVAIA------SNSGGKQAL 289
Query: 279 -DFKHVVEIFDDMLRNGVQPDRI-TFNSLLAVCSRGGLWEAARNLFNEMVHRGID-QDIF 335
+ ++ + G+ P ++ S + + + G+ Q +
Sbjct: 290 ETVQRLLPVLCQAH--GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVV 345
Query: 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTYSTMIDGYAKAGRLDDALNMFSE 394
+ K A + + A ++P VV ++ G + L + +
Sbjct: 346 AIASH--DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ 403
Query: 395 MKFLGIGL---DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIR-KDAVTYNALLGGYG 450
GL V+ + L + L V + + G+ + V + GG
Sbjct: 404 ----AHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIASNGGGRP 457
Query: 451 KQGKYDEVRRMFEQ 464
+
Sbjct: 458 ALESIVAQLSRPDP 471
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 9e-07
Identities = 80/615 (13%), Positives = 172/615 (27%), Gaps = 106/615 (17%)
Query: 23 HNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSPRNAPKPAATSTTVAPNPKPFHSL 82
+ + R P + H +H + P S NA + +T+ +P +
Sbjct: 3 VKRTQTDS-RMQSTPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPM---TY 58
Query: 83 SPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIAMSTRHSVVA----EEALHH------V 132
+S ++T +S+ + R RH + + A +
Sbjct: 59 LANNTSTDGSFLKERNAQNTDSLSREDYLR-----LWRHDALMQQQYKCAAFVGEKVLDI 113
Query: 133 TAFARDDVSLGDIL---KKFE-----FKLCGADD-----YTFLLRELGNRGEWSKAIQCF 179
T D L + + + L +W A+
Sbjct: 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLL 173
Query: 180 AFA---------VKREERKNDQGKLASAMISILG----RLGKVDLAKNIFETALNEGYGN 226
+ ++ KL ++M + G L D AK ++ AL
Sbjct: 174 GETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL-MVDAK 232
Query: 227 TVYAFSALISAY-GRSGYCQEAISVFNSMKRYNLKPNLVT--YNAVIDACGKGGVDFKHV 283
AF L+S + + + + N + Y ++ + +
Sbjct: 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED-ELRRA 291
Query: 284 VEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGID-QDIFTYNTLLD 342
+ + D + + +++ ID ++ Y L
Sbjct: 292 EDYLSSINGLEKSSD--LLLCKADTLFVRSRFIDVLAITTKILE--IDPYNLDVYPLHLA 347
Query: 343 AICKGAQMDLAFEIMAEMPAKNISPN-VVTYSTMIDGYAKAGRLDDALNMFS---EMK-- 396
++ + + + + I + + P VT+ + Y ++ +A FS M
Sbjct: 348 SLHESGEKNKLYLISND--LVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405
Query: 397 ----FLGIG-----LDRV-----SYNTVLSI--------------YAKLGRFEEALLVCK 428
++G +Y T + + +LG A +
Sbjct: 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ 465
Query: 429 EMESSGIR-KDAVTYNALLGGYGKQGKYDEVRRMFEQ-----MKADCVSPNL-LTYSTLI 481
S + D + N L + F+ K T++ L
Sbjct: 466 --SSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523
Query: 482 DVYSKGGLYKEAMQIFREFKQAGLKAD-VVLYSALIDALCKNGLVESAVSLLDEMTKEGI 540
Y K +Y A+ + L + +++A+ + A++ L E I
Sbjct: 524 HAYRKLKMYDAAIDALNQGLL--LSTNDANVHTAIALVYLHKKIPGLAITHLHESLA--I 579
Query: 541 RPN-VVTYNSIIDAF 554
PN ++ + + A
Sbjct: 580 SPNEIMASDLLKRAL 594
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 21/176 (11%), Positives = 49/176 (27%), Gaps = 20/176 (11%)
Query: 388 ALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKE----MESSGIRKD-AVTY 442
AL+++ I + S + Y +++AL + + A++
Sbjct: 167 ALDIYQNHPLYSIRTIQ-SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISL 225
Query: 443 NALLGGYGKQGKYDEVRRMFEQ---MKADCVSPNLL-TYSTLIDVYSKGG-------LYK 491
+ Y + G F++ + + V L L K G +
Sbjct: 226 LNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIE 285
Query: 492 EAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTY 547
E + K + A+ + +S + K+ + +
Sbjct: 286 EGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE---KKNLHAYIEAC 338
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 23/161 (14%), Positives = 54/161 (33%), Gaps = 19/161 (11%)
Query: 388 ALNMFSEMKF-LGIGLDRVSYNTVLSIYAKLGR-------FEEALLVCKEMESSGIRKDA 439
AL + +++ I + S + + Y + G F++A V +E + K
Sbjct: 208 ALELAMDIQNDRFIAI---SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK-- 262
Query: 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPN----LLTYSTLIDVYSKGGLYKEAMQ 495
L K G+ + + E+ + + + L VY + ++
Sbjct: 263 -VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHD 321
Query: 496 IFREFKQAGLKADVV-LYSALIDALCKNGLVESAVSLLDEM 535
+ F++ L A + + + E A + ++
Sbjct: 322 LLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 17/138 (12%), Positives = 45/138 (32%), Gaps = 17/138 (12%)
Query: 379 YAKAGRLDDALNMFSE-----MKFLGIGLDRVSYNTVLSIYAKLGRFEEA-------LLV 426
Y ++G A+ F + + + L + + K G+ ++A L
Sbjct: 232 YDRSGDDQMAVEHFQKAAKVSREKVPDLLPK-VLFGLSWTLCKAGQTQKAFQFIEEGLDH 290
Query: 427 CKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLI-DVYS 485
++ + A+ + K ++ FE+ + + V+
Sbjct: 291 ITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLH---AYIEACARSAAAVFE 347
Query: 486 KGGLYKEAMQIFREFKQA 503
+++A +R+ +A
Sbjct: 348 SSCHFEQAAAFYRKVLKA 365
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 379 YAKAGRLDDALNMFS---EMKFLGIGLDR----VSYNTVLSIYAKLGRFEEALLVCKEME 431
Y + +A ++ + ++ +G D + N + +Y K G+++EA +CK
Sbjct: 53 YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR-- 110
Query: 432 SSGIRKD---------AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS------PNLL- 475
+ IR+ A N L QGK +EV + + + PN+
Sbjct: 111 ALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170
Query: 476 TYSTLIDVYSKGGLYKEAMQIFRE 499
T + L Y K G Y++A +++E
Sbjct: 171 TKNNLASCYLKQGKYQDAETLYKE 194
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 23/148 (15%), Positives = 41/148 (27%), Gaps = 34/148 (22%)
Query: 379 YAKAGRLDDALNMFSE-----MKFLGIGLDR-----VSYNTVLSIYAKLGRFEEALLVCK 428
Y K G+ +A + K LG N + + G+ EE +
Sbjct: 95 YGKRGKYKEAEPLCKRALEIREKVLG---KFHPDVAKQLNNLALLCQNQGKAEEVEYYYR 151
Query: 429 E-MESSGIRKD---------AVTYNALLGGYGKQGKYDEVRRMFEQ----MKADCVSPN- 473
+E I A T N L Y KQGKY + ++++
Sbjct: 152 RALE---IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208
Query: 474 ---LLTYSTLIDVYSKGGLYKEAMQIFR 498
+ + +++
Sbjct: 209 GDNKPIWMHAEEREESKDKRRDSAPYGE 236
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 31/147 (21%)
Query: 379 YAKAGRLDDALNMFSE-----MKFLG-----IGLDRVSYNTVLSIYAKLGRFEEALLVCK 428
Y + DA N+ ++ K LG + + N + +Y K G+++EA +CK
Sbjct: 79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVA---ATLNNLAVLYGKRGKYKEAEPLCK 135
Query: 429 EMESSGIRKD---------AVTYNALLGGYGKQGKYDEVRRMFEQ---MKADCVSPN--- 473
+ IR+ A N L QGKY+EV +++ + + P+
Sbjct: 136 R--ALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN 193
Query: 474 -LLTYSTLIDVYSKGGLYKEAMQIFRE 499
T + L Y K G +K+A +++E
Sbjct: 194 VAKTKNNLASCYLKQGKFKQAETLYKE 220
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 25/144 (17%)
Query: 379 YAKAGRLDDALNMFS---EMKFLGIGLDR----VSYNTVLSIYAKLGRFEEALLVCKEME 431
YA GR + A+ + E G D N + +Y ++++A + +
Sbjct: 37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLND-- 94
Query: 432 SSGIRKD---------AVTYNALLGGYGKQGKYDEVRRMFEQ---MKADCVSPN----LL 475
+ IR+ A T N L YGK+GKY E + ++ ++ + +
Sbjct: 95 ALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154
Query: 476 TYSTLIDVYSKGGLYKEAMQIFRE 499
+ L + G Y+E ++
Sbjct: 155 QLNNLALLCQNQGKYEEVEYYYQR 178
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 18/110 (16%)
Query: 406 SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD---------AVTYNALLGGYGKQGKYD 456
+ + ++ YA GR+E A+ +CK ++ + A N L Y Q KY
Sbjct: 29 TLHNLVIQYASQGRYEVAVPLCK--QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 86
Query: 457 EVRRMFEQ---MKADCVSPN----LLTYSTLIDVYSKGGLYKEAMQIFRE 499
+ + ++ + + T + L +Y K G YKEA + +
Sbjct: 87 DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR 136
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 15/105 (14%), Positives = 28/105 (26%), Gaps = 25/105 (23%)
Query: 379 YAKAGRLDDALNMFSEMKFLGIGLDRV----------SYNTVLSIYAKLGRFEEALLVCK 428
Y K G+ A ++ + L +R + G+ ++
Sbjct: 205 YLKQGKFKQAETLY--KEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT---- 258
Query: 429 EMESSGIRKD---------AVTYNALLGGYGKQGKYDEVRRMFEQ 464
G T L Y +QGK++ + E
Sbjct: 259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 30/145 (20%)
Query: 379 YAKAGRLDDALNMFSEMKFLGI-----GLDR----VSYNTVLSIYAKLGRFEEALLVCKE 429
Y K G+ +A + + L I G D N + + G++EE +
Sbjct: 121 YGKRGKYKEAEPLC--KRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178
Query: 430 MESSGIRKD---------AVTYNALLGGYGKQGKYDEVRRMFEQ----MKADCVSPN--- 473
+ I + A T N L Y KQGK+ + ++++
Sbjct: 179 --ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236
Query: 474 -LLTYSTLIDVYSKGGLYKEAMQIF 497
+ + G K+
Sbjct: 237 NKPIWMHAEEREECKGKQKDGTSFG 261
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 21/178 (11%)
Query: 379 YAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVL-SIYAKLGRFEEALLVCKEMESSGIR- 436
+AG + A M+ D +L SI+ + R + + I+
Sbjct: 9 EYQAGDFEAAERHC--MQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTL----AIKQ 62
Query: 437 --KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL-LTYSTLIDVYSKGGLYKEA 493
A Y+ L Y ++G+ E + A + P+ Y L G + A
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYR--HALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 494 MQIFREFKQA-GLKADVV-LYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYN 548
+Q + A D+ + S L + L G +E A + + + +PN V ++
Sbjct: 121 VQ---AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQPNFAVAWS 173
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 67/406 (16%), Positives = 139/406 (34%), Gaps = 69/406 (16%)
Query: 165 ELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMI---SILGRLGKVDLAKNIFETALN 221
G++ A + ++ + ++ SI + ++D + + A+
Sbjct: 8 REYQAGDFEAAERHCMQLWRQ------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI- 60
Query: 222 EGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLV-TYNAVIDACGKGGVDF 280
+ A+S L + Y G QEAI + LKP+ + Y + A G D
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYR--HALRLKPDFIDGYINLAAALVAAG-DM 117
Query: 281 KHVVEIFDDMLRNGVQPDRI-TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIF-TYN 338
+ V+ + L+ PD + L + G E A+ + + + + ++
Sbjct: 118 EGAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQPNFAVAWS 173
Query: 339 TLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTYSTMIDGYAKAGRLDDALNMFSEMKF 397
L ++ LA + A + PN + Y + + +A D A+
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEK--AVTLDPNFLDAYINLGNVLKEARIFDRAVA------- 224
Query: 398 LGIGLDRVSYNTVLSI--------------YAKLGRFEEALLVCKEMESSGIR---KDAV 440
+Y LS+ Y + G + A+ + I
Sbjct: 225 --------AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR----AIELQPHFPD 272
Query: 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL-LTYSTLIDVYSKGGLYKEAMQIFRE 499
Y L ++G E + A + P + + L ++ + G +EA++++R
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYN--TALRLCPTHADSLNNLANIKREQGNIEEAVRLYR- 329
Query: 500 FKQA-GLKAD-VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN 543
+A + + +S L L + G ++ A+ E + I P
Sbjct: 330 --KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPT 371
|
| >2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1 Length = 96 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-05
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 750 SESCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRR 809
++ LDLH + A + L + F+ + LS++TG G HS+ G ++
Sbjct: 7 GQNVLDLHGLHVDEALEHLMRVLEK-KTEEFKQNGGKPYLSVITGRGNHSQ-GGVARIKP 64
Query: 810 AVEVLLTGMGAPFWVAN 826
AV L F
Sbjct: 65 AVIKYLISHSFRFSEIK 81
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 34/362 (9%), Positives = 96/362 (26%), Gaps = 75/362 (20%)
Query: 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG 225
G+++ A+ + + + + + K+ +TA
Sbjct: 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE 142
Query: 226 NTVYAFSA------------LISAYGRSGYCQEAISVFNSMKRYN---LKPNLVTYNAVI 270
+ ++++ + + ++ + + Y
Sbjct: 143 LSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSP 202
Query: 271 DACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG------GLWEAARNLFNE 324
++ K F +F++ L + +++ +++ G A +
Sbjct: 203 ESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK 262
Query: 325 MVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR 384
AI + P V +Y M A
Sbjct: 263 ------------------AI-------------------ELFPRVNSYIYMALIMADRND 285
Query: 385 LDDALNMFSEMKFLGIGLDR---VSYNTVLSIYAKLGRFEEALLVCKEMESSGIR---KD 438
+ N F + + LD Y + L +++A + ++
Sbjct: 286 STEYYNYFDKA----LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKA----KELDPEN 337
Query: 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL-LTYSTLIDVYSKGGLYKEAMQIF 497
Y L ++ K+D+ +F +A P + ++ + + +A++ +
Sbjct: 338 IFPYIQLACLAYRENKFDDCETLFS--EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395
Query: 498 RE 499
Sbjct: 396 DL 397
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 50/365 (13%), Positives = 104/365 (28%), Gaps = 72/365 (19%)
Query: 146 LKKFEFKLCGADDYTFLLRELGN----RGEWSKAIQCFAFAVKREERKNDQ--GKLASAM 199
+ + + + ELG G+ + A+ F AV + N + A+
Sbjct: 16 ENLYFQSMADVEKH----LELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVF 70
Query: 200 ISILGRLGKVDLAKNIFETA--LNEGYGNTVYAFSALISAYGRSGYCQEAISVF------ 251
++ +GK A L + A + G EA F
Sbjct: 71 LA----MGKSKAALPDLTKVIQLKMDF---TAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123
Query: 252 --NSMKRYNLKPNLVTYNAVIDACGKGGV-----DFKHVVEIFDDMLRNGVQPDRITFNS 304
+ + + L+ + + + D+ + D +L V
Sbjct: 124 NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE--VCVWDAELRE 181
Query: 305 LLAVCSRG-GLWEAARNLFNEMVHRGID-QDIFTYNTLLDAICKGAQMDLAFEIMAEMPA 362
L A C G A + + + + + + +L+ + E
Sbjct: 182 LRAECFIKEGEPRKAISDLKAASK--LKNDNTEAFYKISTLYYQLGDHELSLSEVRE--C 237
Query: 363 KNISPN-------------VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD------ 403
+ + + + + GR DA + + + +
Sbjct: 238 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES----VMKTEPSIAEY 293
Query: 404 -RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG---GYGKQGKYDEVR 459
S + ++K + EA+ VC E ++ + NAL Y + YDE
Sbjct: 294 TVRSKERICHCFSKDEKPVEAIRVCSE----VLQMEPDNVNALKDRAEAYLIEEMYDEAI 349
Query: 460 RMFEQ 464
+ +E
Sbjct: 350 QDYET 354
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 30/195 (15%), Positives = 61/195 (31%), Gaps = 35/195 (17%)
Query: 379 YAKAGRLDDALNMF----------SEMKFLGIGLDRVSYNTVLS-----IYAKLGRFEEA 423
+AG+ A++ F +EM + ++ L+ Y K +++A
Sbjct: 14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKA 73
Query: 424 LLVCKEMESSGIRKD---AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP-NLLTYST 479
L KE ++K A +G+ + RM+E K + NL
Sbjct: 74 YLFYKE----LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYE--KILQLEADNLAANIF 127
Query: 480 L-IDVYSKGGLYKEAMQIFREFKQAGLKAD---VVLYSALIDALCKNGLVESAVSLLDEM 535
L Y K+ ++ + L + + E A + L ++
Sbjct: 128 LGNYYYLTAEQEKKKLE---TDYKK-LSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183
Query: 536 TKEGIRPNVVTYNSI 550
P+ ++
Sbjct: 184 IL--RFPSTEAQKTL 196
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 26/200 (13%), Positives = 54/200 (27%), Gaps = 22/200 (11%)
Query: 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKRE-------------ERKNDQGKLASAMISI 202
D+ + G+ +A+ F + + KLA+ +
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63
Query: 203 LGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN 262
+ D A ++ L + N V A G ++A+ ++ K L+ +
Sbjct: 64 YKKNRNYDKAYLFYKELL-QKAPNNVDCLEACAEMQVCRGQEKDALRMYE--KILQLEAD 120
Query: 263 LV-TYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRI-TFNSLLAVCSRGGLWEAARN 320
+ + + K +E L +E ARN
Sbjct: 121 NLAANIFLGNYYYLTAEQEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARN 178
Query: 321 LFNEMVHRGIDQDIFTYNTL 340
+++ TL
Sbjct: 179 SLQKVIL--RFPSTEAQKTL 196
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 18/168 (10%), Positives = 48/168 (28%), Gaps = 16/168 (9%)
Query: 372 YSTMIDGYAKAGRLDDALNMFSE-----MKFLGIGLDRVSYNTVLSIYAKLGRFEEALLV 426
Y+ + A +L+ A + + + + ++ + L R EA+
Sbjct: 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98
Query: 427 CKEM----ESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQ-----MKADCVSPNLLTY 477
++ +G A G + + +++Q + +
Sbjct: 99 IEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELI 158
Query: 478 STLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLV 525
+ + + EA + K+ + ++ Y LV
Sbjct: 159 GKASRLLVRQQKFDEAAASLQ--KEKSMYKEMENYPTCYKKCIAQVLV 204
|
| >3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} Length = 82 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 2e-04
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 754 LDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEV 813
LDLH + A + L + P L ++TG G HS+ G ++ AV
Sbjct: 3 LDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLS-VITGRGNHSQ-GGVARIKPAVIK 60
Query: 814 LLTGMGAPFWVAN 826
L F
Sbjct: 61 YLISHSFRFSEIK 73
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 877 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.6 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.56 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.56 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.54 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.53 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.52 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.51 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.5 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.5 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.49 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.48 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.48 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.47 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.47 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.44 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.42 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.41 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.4 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.37 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.36 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.36 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.36 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.32 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.31 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.3 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.29 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.28 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.19 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.19 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.19 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.17 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.15 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.15 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.14 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.14 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.09 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.08 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.07 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.01 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.0 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.97 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.96 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.95 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.93 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.91 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.89 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.88 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.87 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.86 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.85 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.84 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.83 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.81 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.8 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.79 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.78 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.75 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.74 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.74 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.73 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.73 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.72 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.68 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.68 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.67 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.67 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.64 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.64 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.62 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.62 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.6 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.58 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.57 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.55 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.51 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.51 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.5 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.49 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.48 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.47 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.47 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.45 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.42 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.4 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.39 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.39 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.39 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.38 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.37 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.36 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.36 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.36 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.34 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.33 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.31 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.31 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.31 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.28 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.27 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.26 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.26 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.25 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.25 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.24 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.24 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.24 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.23 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.2 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.2 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.2 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.19 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.16 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.14 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.14 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.1 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.09 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.07 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.06 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.06 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.05 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.04 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.01 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.01 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.99 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.97 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.97 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.94 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.94 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.94 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.92 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.9 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.88 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.88 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.87 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.86 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.85 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.85 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.85 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.84 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.83 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.81 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.77 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.76 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.69 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.69 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.63 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.63 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.6 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.6 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.59 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.58 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.57 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.53 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.52 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.49 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.38 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.3 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.2 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.19 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.15 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.06 | |
| 3fau_A | 82 | NEDD4-binding protein 2; SMR, small-MUTS related d | 96.91 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.76 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.73 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.67 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.48 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.42 | |
| 2d9i_A | 96 | NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 | 96.29 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.29 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.28 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.19 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.08 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.97 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.95 | |
| 2vkc_A | 135 | NEDD4-binding protein 2; human BCL3 binding protei | 95.89 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.67 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.45 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.37 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.21 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.07 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.93 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.75 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.73 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.31 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.97 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.87 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.7 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.36 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.31 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.0 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.0 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.55 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.54 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.46 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.2 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.08 | |
| 2zqe_A | 83 | MUTS2 protein; alpha/beta, ATP-binding, DNA-bindin | 87.47 | |
| 3qd7_X | 137 | Uncharacterized protein YDAL; alpha/beta/alpha fol | 87.42 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.01 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 85.94 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 85.79 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.44 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.1 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.95 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 81.9 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 81.1 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.02 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=378.22 Aligned_cols=492 Identities=12% Similarity=0.037 Sum_probs=408.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002814 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (877)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 234 (877)
....|..++..+.+.|++++|+.+|++++... ++ ...+..++.+|.+.|++++|+.+|+++... .++..+++.+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDIT---GN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhC---CC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 35568889999999999999999999999764 23 357788999999999999999999998653 5689999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCH
Q 002814 235 ISAYGRSGYCQEAISVFNSMKRY---------------NLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDR 299 (877)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~ 299 (877)
+.+|.+.|++++|+++|+++... +...+..+|+.++.+|.+.| ++++|+++|++|.+.+.. +.
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~-~~ 234 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS-NFDRAKECYKEALMVDAK-CY 234 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCch-hh
Confidence 99999999999999999954321 22335889999999999999 999999999999986433 55
Q ss_pred HHHHHHHHHHHhCCCHHHHH--HH-HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHH
Q 002814 300 ITFNSLLAVCSRGGLWEAAR--NL-FNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376 (877)
Q Consensus 300 ~t~~~ll~~~~~~g~~~~A~--~~-~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li 376 (877)
..+..+...+...+..+.+. .+ +..+...+......+|+.++.+|.+.|++++|+++|+++.+. .++..+|+.++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 56666665554443322221 11 555555554555677888899999999999999999999875 47999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 002814 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYD 456 (877)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 456 (877)
.+|.+.|++++|+++|+++.+.+ +.+..+++.++.+|.+.|++++|..+++++.+.. +.+..+|+.++.+|.+.|+++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999875 4577889999999999999999999999998665 668999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 457 EVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 457 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
+|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|+++|++|.
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998753 34688999999999999999999999999998753 488999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCC
Q 002814 537 KEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQG 616 (877)
Q Consensus 537 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 616 (877)
+.. ..+..+|..++.+|.+.|++++|++.++++++..+
T Consensus 469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------------------------------------- 506 (597)
T 2xpi_A 469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK----------------------------------------- 506 (597)
T ss_dssp HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh-----------------------------------------
Confidence 763 33688999999999999988877665444333211
Q ss_pred cchhhhhHhHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccch
Q 002814 617 KKENRCRQEILCILGVFQKMHKLKIKPN--VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNI 693 (877)
Q Consensus 617 ~~~~~~~~~~~~A~~~~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~ 693 (877)
+.+..|+ ..+|..++.+|.+.|++++|.++|+++.+.+|.+..+...+...+ ..|+
T Consensus 507 ---------------------~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 507 ---------------------KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp ---------------------HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred ---------------------ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 2256787 678999999999999999999999999988887777666665555 6788
Q ss_pred HHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 002814 694 WVQALSLFDEVKLMDSSTASAFYNALTDMLW 724 (877)
Q Consensus 694 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 724 (877)
+++|.+.|+++++++| .+...|..|+.+|.
T Consensus 566 ~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 566 PGLAITHLHESLAISP-NEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCC-CChHHHHHHHHHHh
Confidence 9999999999999988 67888888877764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=360.61 Aligned_cols=473 Identities=10% Similarity=0.019 Sum_probs=383.3
Q ss_pred ChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 002814 191 DQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVI 270 (877)
Q Consensus 191 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 270 (877)
.+...++.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|+.+|+++.. ..++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHH
Confidence 35668899999999999999999999999864 46778999999999999999999999999864 257899999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Q 002814 271 DACGKGGVDFKHVVEIFDDMLRN---------------GVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIF 335 (877)
Q Consensus 271 ~~~~~~g~~~~~a~~~~~~m~~~---------------g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 335 (877)
.+|.+.| ++++|+++|+++... |...+..+|+.++.+|.+.|++++|.++|++|.+.+. .+..
T Consensus 158 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~ 235 (597)
T 2xpi_A 158 FCLVKLY-DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYE 235 (597)
T ss_dssp HHHHHTT-CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHHh-hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhH
Confidence 9999999 999999999953321 2233578899999999999999999999999988652 2566
Q ss_pred HHHHHHHHHHHcCCHHHHHH--H-HHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 336 TYNTLLDAICKGAQMDLAFE--I-MAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLS 412 (877)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~ 412 (877)
.+..+...+...+..+.+.. + +..+...+...+..+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 66666665544433322221 1 444444444455667777888899999999999999988765 578899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002814 413 IYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKE 492 (877)
Q Consensus 413 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 492 (877)
+|.+.|++++|+.+|+++.+.+ +.+..+++.++.+|.+.|++++|..+|+++.+. .+.+..+|+.++.+|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999998766 557788899999999999999999999998865 34578889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhh
Q 002814 493 AMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLG 572 (877)
Q Consensus 493 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~ 572 (877)
|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|++|.+.+ ..+..+|..++.+|.+.|++++|
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A--------- 460 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLA--------- 460 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHH---------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHH---------
Confidence 999999988754 3368899999999999999999999999998763 33677888888888888776654
Q ss_pred hhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002814 573 KQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAIL 652 (877)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll 652 (877)
+++|++|.+.. ..+..+|+.++
T Consensus 461 ---------------------------------------------------------~~~~~~~~~~~-~~~~~~~~~l~ 482 (597)
T 2xpi_A 461 ---------------------------------------------------------NEYLQSSYALF-QYDPLLLNELG 482 (597)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHC-CCCHHHHHHHH
T ss_pred ---------------------------------------------------------HHHHHHHHHhC-CCChHHHHHHH
Confidence 44666665522 23678899999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhc------CCcc-hhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 002814 653 NACSRCNSFEDASMLLEELRLF------DNQV-YGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLW 724 (877)
Q Consensus 653 ~a~~~~g~~~eA~~~~~~~~~~------~~~~-~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 724 (877)
.+|.+.|++++|.++|+++.+. +|.. ..+...+...+ +.|++++|++.++++++.+| .+..+|..|+.+|.
T Consensus 483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~ 561 (597)
T 2xpi_A 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST-NDANVHTAIALVYL 561 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Confidence 9999999999999999999876 5554 33445555444 78999999999999999998 78899999999999
Q ss_pred hcCchhhHHHHHHHhhhhh
Q 002814 725 HFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 725 ~~g~~~~A~~~~~~~~~~~ 743 (877)
+.|++++|.++++++.+..
T Consensus 562 ~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 562 HKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHHHHHhcC
Confidence 9999999999999987654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-26 Score=254.29 Aligned_cols=382 Identities=15% Similarity=0.139 Sum_probs=329.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
+...+.+.|++++|++.|..+++.. |.+...+..+...+...|++++|...++.+++..+ .+..+|..+..+|.+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHC
Confidence 3456778999999999999998875 55667788888999999999999999999988753 4789999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 002814 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNL 321 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 321 (877)
|++++|+..|+++.+.... +..+|..+..++.+.| ++++|.+.|+++++.... +...+..+...+...|++++|.+.
T Consensus 81 g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAG-DMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHS-CSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999999999875422 5678999999999999 999999999999986432 456677888899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 002814 322 FNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIG 401 (877)
Q Consensus 322 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 401 (877)
|+++.+.. +.+..+|+.+...|.+.|++++|++.|+++.+.+.. +...|..+...+...|++++|+..|++..... +
T Consensus 158 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 234 (388)
T 1w3b_A 158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P 234 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 99999874 346889999999999999999999999999886433 67889999999999999999999999988764 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002814 402 LDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLI 481 (877)
Q Consensus 402 pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 481 (877)
.+..++..+...|.+.|++++|+..|+++.+.+ +.+..+|..+...|.+.|++++|...|+++.+. .+.+..+|..+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHH
Confidence 467889999999999999999999999999876 557889999999999999999999999999886 356789999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcC
Q 002814 482 DVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSA 558 (877)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 558 (877)
..|.+.|++++|.+.|+++.+.. +.+..++..+...|.+.|++++|+..|+++.+. .|+ ...|..+...+...|
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 99999999999999999998764 346889999999999999999999999999874 454 447777666665544
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-29 Score=280.63 Aligned_cols=186 Identities=16% Similarity=0.198 Sum_probs=114.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHCCCCCCHHHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLG---------RFEEALLVCKEMESSGIRKDAVTY 442 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g---------~~~~A~~~~~~m~~~g~~~~~~~~ 442 (877)
++.+|++|++.|++++|+++|++|.+.|+.||.+||++||.+|++.+ .+++|.++|++|.+.|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44444444444444444444444444444444444444444444333 255666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 443 NALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (877)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 522 (877)
++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc
Q 002814 523 GLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRS 557 (877)
Q Consensus 523 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 557 (877)
|++++|.++|++|++.|+.|+..||+.++..|+..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 66666666666666666666666666666666554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=276.93 Aligned_cols=205 Identities=15% Similarity=0.183 Sum_probs=146.1
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC---------HHH
Q 002814 318 ARNLFNEMVHRGIDQD-IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR---------LDD 387 (877)
Q Consensus 318 A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~---------~~~ 387 (877)
+..+.+++.+.+.... ..+++.+|++|++.|++++|+++|++|.+.|+.||.+|||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 3344444554444332 234556666666666666666666666666666666666666666655443 577
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 388 ALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (877)
Q Consensus 388 A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (877)
|.++|++|...|+.||.+||++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 468 DCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (877)
Q Consensus 468 ~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 522 (877)
.|+.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888888888888888888877653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-25 Score=246.34 Aligned_cols=369 Identities=12% Similarity=0.037 Sum_probs=325.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 002814 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGV 278 (877)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 278 (877)
+...+.+.|++++|.+.++.+.+..+. +..++..+...+...|++++|...++...+... .+..+|..+..++.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g- 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERG- 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCC-
Confidence 456678899999999999999887543 678888899999999999999999999887543 37889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMA 358 (877)
Q Consensus 279 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (877)
++++|++.|+++++... .+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|+++|+
T Consensus 82 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999998632 256679999999999999999999999999874 2356778889999999999999999999
Q ss_pred HchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 002814 359 EMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD 438 (877)
Q Consensus 359 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 438 (877)
++.+... -+..+|..+...|.+.|++++|+..|+++.+.+ +.+...+..+...+...|++++|+..|++..+.. +.+
T Consensus 160 ~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 160 KAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 9987643 368899999999999999999999999999875 4567889999999999999999999999998765 557
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDA 518 (877)
Q Consensus 439 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 518 (877)
..++..+...|.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|++++|.+.|+++.+.. +.+..+|..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 8999999999999999999999999999873 3367899999999999999999999999999875 4588999999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhh
Q 002814 519 LCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (877)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (877)
+.+.|++++|+..|+++.+.. +.+..++..+..++.+.|++++|+..++++++..|+..
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 373 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 999999999999999998752 33567999999999999999999999999999887654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-22 Score=229.24 Aligned_cols=383 Identities=10% Similarity=-0.004 Sum_probs=218.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
+.+......+.+.|++++|+..|+.++... + +..++..++.++.+.|++++|.+.|+++++..+ .+..+|..++.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 81 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK---E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC---c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHH
Confidence 344445555666666666666666666554 1 244555566666666666666666666655432 24555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002814 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 316 (877)
+|.+.|++++|+..|+++...+. ++......++..+.... ....+.+.+..+...+..++...+......
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------- 151 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQ-AMSKLKEKFGDIDTATATPTELSTQPAKER-------- 151 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHH-HHHHHTTC------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhccCChhhHH--------
Confidence 66666666666666666655432 12223333333332222 222222223222222222222111110000
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 002814 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK---AGRLDDALNMFS 393 (877)
Q Consensus 317 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~---~g~~~~A~~~~~ 393 (877)
.......|+.......+..+...... ..+ .-+.+...+..+...+.. .|++++|+.+|+
T Consensus 152 --------~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 213 (514)
T 2gw1_A 152 --------KDKQENLPSVTSMASFFGIFKPELTF-------ANY---DESNEADKELMNGLSNLYKRSPESYDKADESFT 213 (514)
T ss_dssp -------------CCCCHHHHHHHHTTSCCCCCC-------SSC---CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH
T ss_pred --------HhhccCCchhHHHHHHHhhcCHHHHH-------HHh---cCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 00000112221111111000000000 000 001124444444444444 788888888888
Q ss_pred HHHH-----CCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 394 EMKF-----LGI--------GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRR 460 (877)
Q Consensus 394 ~m~~-----~g~--------~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 460 (877)
++.+ ..- +.+..++..+...+...|++++|...|+++.+.. |+..++..+...|...|++++|..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 291 (514)
T 2gw1_A 214 KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYN 291 (514)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGG
T ss_pred HHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHH
Confidence 8776 311 1234567777788888888888888888887765 337778888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 002814 461 MFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGI 540 (877)
Q Consensus 461 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 540 (877)
.|+++.+.. +.+...|..+...|...|++++|...|+++.+... .+...+..+...|.+.|++++|+.+|+++.+..
T Consensus 292 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 368 (514)
T 2gw1_A 292 YFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF- 368 (514)
T ss_dssp HHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-
Confidence 888887763 33567788888888888888888888888887653 356778888888888888888888888887642
Q ss_pred CCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 541 RPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 541 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
..+..++..+...+.+.|++++|+..+++++...++.
T Consensus 369 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 369 PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 2245677888888888888888888777777665543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-22 Score=231.06 Aligned_cols=435 Identities=11% Similarity=-0.000 Sum_probs=314.3
Q ss_pred HHhccCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHH
Q 002814 132 VTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDL 211 (877)
Q Consensus 132 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 211 (877)
+...+....++....+.+...+ ++..+..+...+.+.|++++|++.|+.++..+ |.+..++..++.++.+.|++++
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK---PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHHhhHHH
Confidence 3445555556555555555554 67788889999999999999999999999885 5567789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 002814 212 AKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDML 291 (877)
Q Consensus 212 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~ 291 (877)
|...|+++...+.. +......++..+.+......+.+.+..+...+..|+...++.......... .......+...+.
T Consensus 92 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 92 AMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE-NLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc-CCchhHHHHHHHh
Confidence 99999999987643 444555556555555555555555555554433344333322211111111 1111111111111
Q ss_pred HCCCC--------C-CHHHHHHHHHHHHh---CCCHHHHHHHHHHHHH-----cCC--------CCCHHHHHHHHHHHHH
Q 002814 292 RNGVQ--------P-DRITFNSLLAVCSR---GGLWEAARNLFNEMVH-----RGI--------DQDIFTYNTLLDAICK 346 (877)
Q Consensus 292 ~~g~~--------p-~~~t~~~ll~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~~~~~~~~~li~~~~~ 346 (877)
..... | +...+..+...+.. .|++++|..+|+++.+ ..- +.+..++..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 11111 1 24445555555554 8999999999999887 311 1235678888999999
Q ss_pred cCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002814 347 GAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLV 426 (877)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 426 (877)
.|++++|++.|+++.+... +...+..+...|...|++++|+..++++.... +.+...+..+...|...|++++|+..
T Consensus 250 ~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999887643 38888889999999999999999999988764 45677888899999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002814 427 CKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK 506 (877)
Q Consensus 427 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 506 (877)
|+++.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|...|+++.+....
T Consensus 327 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 327 FDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 99998876 5567888899999999999999999999988763 336778889999999999999999999998764321
Q ss_pred -CC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhh
Q 002814 507 -AD----VVLYSALIDALCK---NGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (877)
Q Consensus 507 -p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (877)
++ ...|..+...|.+ .|++++|...|+++.+.. ..+..++..+..+|.+.|++++|+..++++++..++..
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 11 3488889999999 999999999999998753 23566888999999999999999999999999888764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-21 Score=215.87 Aligned_cols=377 Identities=14% Similarity=0.090 Sum_probs=224.4
Q ss_pred hcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 002814 149 FEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTV 228 (877)
Q Consensus 149 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 228 (877)
+...+.++..+..++..+.+.|++++|+.+|+.++... +.+..++..++.++...|++++|...|+++++.+.. +.
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~ 94 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FT 94 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cH
Confidence 33333344445555566666666666666666665543 333455555666666666666666666666554322 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 229 YAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN-L---VTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNS 304 (877)
Q Consensus 229 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ 304 (877)
.++..++.+|.+.|++++|+..|+++.+.. |+ . .++..++..+... .+..
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~------------------------~~~~ 148 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQ------------------------RLRS 148 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHH------------------------HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHH------------------------HHHH
Confidence 555666666666666666666666665532 32 2 3333333321100 1112
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC
Q 002814 305 LLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR 384 (877)
Q Consensus 305 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~ 384 (877)
+...+...|++++|...|+++.+.. +.+..++..+..+|.+.|++++|+++|+++.+.. +.+..+|..+..+|...|+
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGD 226 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 2334566677777777777776653 3356667777777777777777777777766542 2256677777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 002814 385 LDDALNMFSEMKFLGIGLDRVSYNTV------------LSIYAKLGRFEEALLVCKEMESSGIRKD----AVTYNALLGG 448 (877)
Q Consensus 385 ~~~A~~~~~~m~~~g~~pd~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~ 448 (877)
+++|+..|+++.... +.+...+..+ +..|.+.|++++|+..|+++.+.. +.+ ...|..+...
T Consensus 227 ~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 227 HELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHH
Confidence 777777777776542 2233334333 677777788888888888777643 222 3466777777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----------
Q 002814 449 YGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDA---------- 518 (877)
Q Consensus 449 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~---------- 518 (877)
+.+.|++++|...++++.+.. +.+..+|..+..+|...|++++|...|+++.+... -+...+..+..+
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~ 382 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLEKAQRLLKQSQKR 382 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHhhcccch
Confidence 888888888888888777642 33577777888888888888888888888777532 245555555522
Q ss_pred --HHHcC-----ChHHHHHHHHHH-HHCCCCCC-----------HHHHHHHHHHHhhcCChhhh
Q 002814 519 --LCKNG-----LVESAVSLLDEM-TKEGIRPN-----------VVTYNSIIDAFGRSATTECT 563 (877)
Q Consensus 519 --~~~~g-----~~~~A~~~~~~m-~~~g~~p~-----------~~~~~~li~~~~~~g~~~~a 563 (877)
|...| +.+++.+.|+++ .+. .|| ...+..+..+|...++.++.
T Consensus 383 ~~y~~lg~~~~~~~~~~~~~y~~~~l~~--~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 383 DYYKILGVKRNAKKQEIIKAYRKLALQW--HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp CSGGGSCSSTTCCTTHHHHHHHHHHHHS--CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred hHHHHhCCCccCCHHHHHHHHHHHHHHh--CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 33334 566777788763 332 222 12566667777666665544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-21 Score=216.42 Aligned_cols=304 Identities=14% Similarity=0.089 Sum_probs=183.8
Q ss_pred HHHhccCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChH
Q 002814 131 HVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVD 210 (877)
Q Consensus 131 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 210 (877)
.+...+....++..+-+.+...+.++..+..+...+...|++++|+..|+.++..+ +.+..++..++.+|.+.|+++
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK---MDFTAARLQRGHLLLKQGKLD 111 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHH
Confidence 34444555555554444455555667788889999999999999999999999885 455778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCH---HHHHHHHHH------------HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 002814 211 LAKNIFETALNEGYGNTV---YAFSALISA------------YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK 275 (877)
Q Consensus 211 ~A~~~~~~~~~~g~~~~~---~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 275 (877)
+|.+.|+++.+.... +. .++..++.. +.+.|++++|+.+|+++.+... .+..++..+..++.+
T Consensus 112 ~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 189 (450)
T 2y4t_A 112 EAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIK 189 (450)
T ss_dssp HHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 999999999986432 45 677777555 5556666666666666654322 245555666666666
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 276 GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFE 355 (877)
Q Consensus 276 ~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 355 (877)
.| ++++|+++|+++++.. +.+..++..++.+|...|++++|...|+++.+.. +.+...+..+...
T Consensus 190 ~g-~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~------------ 254 (450)
T 2y4t_A 190 EG-EPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV------------ 254 (450)
T ss_dssp TT-CGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH------------
T ss_pred CC-CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH------------
Confidence 66 6666666666665432 1245555566666666666666666666655442 1123333322000
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD-----RVSYNTVLSIYAKLGRFEEALLVCKEM 430 (877)
Q Consensus 356 ~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-----~~~~~~li~~~~~~g~~~~A~~~~~~m 430 (877)
. ....+..+...|.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|+..++++
T Consensus 255 -----~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 255 -----K------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp -----H------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred -----H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 0 0000111245555555555555555555543 222 234555555555666666666666555
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 431 ESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (877)
Q Consensus 431 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (877)
.+.. +.+..+|..+..+|.+.|++++|...|+++.+.
T Consensus 322 ~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 322 LQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5443 334555555666666666666666666665553
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-21 Score=221.46 Aligned_cols=457 Identities=11% Similarity=0.073 Sum_probs=276.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
.+.+..+...+.+.|++++|++.|+.++... |.+..++..++.+|.+.|++++|++.|+++++..+. +..++..+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD---PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHH
Confidence 4456667777777777777777777777764 445567777777777777777777777777766433 566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 315 (877)
.++...|++++|+..|+.+ .. .|+.. +..+..+...+ ....|...+++++... |+.
T Consensus 101 ~~~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~-~~~~a~~~~~~~l~~~--~~~---------------- 156 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERN-LNKQAMKVLNENLSKD--EGR---------------- 156 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHH-C---------------CHHHHH-HHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHH-HHHHHHHHHHHHHHhC--ccc----------------
Confidence 7777777777777777533 21 12211 11122222333 3455555555554321 000
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCH-HHHHHHHHHH--------HHcCCHH
Q 002814 316 EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNV-VTYSTMIDGY--------AKAGRLD 386 (877)
Q Consensus 316 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~li~~~--------~~~g~~~ 386 (877)
.....|+ ...+..+....+.+.+...+.+.... .+.. .....+...+ ...|+++
T Consensus 157 -----------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 219 (537)
T 3fp2_A 157 -----------GSQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLT 219 (537)
T ss_dssp -------------CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred -----------cccccch----HhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 0001111 11222233333333333333333221 1111 1111111111 1124566
Q ss_pred HHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002814 387 DALNMFSEMKFLGIGLD-------RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVR 459 (877)
Q Consensus 387 ~A~~~~~~m~~~g~~pd-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 459 (877)
+|+.+|+++.+.. +.+ ..++..+...+...|++++|...|+++.+.. |+..++..+...|...|++++|.
T Consensus 220 ~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~ 296 (537)
T 3fp2_A 220 KSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFF 296 (537)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHH
T ss_pred HHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHH
Confidence 7777777766542 122 2245566667777788888888888877653 45777777888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 002814 460 RMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG 539 (877)
Q Consensus 460 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 539 (877)
..|+++.+.. +.+..+|..+...|...|++++|...|+++.+... .+...|..+...|.+.|++++|+.+|+++.+..
T Consensus 297 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 297 KFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888877653 33577788888888888888888888888877653 356778888888888888888888888888752
Q ss_pred CCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcch
Q 002814 540 IRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKE 619 (877)
Q Consensus 540 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 619 (877)
..+..++..+...+...|++++|+..++++++..+........+ ..+.....++.... .....
T Consensus 375 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~-----~~~~~ 437 (537)
T 3fp2_A 375 -PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI-----------GPLIGKATILARQS-----SQDPT 437 (537)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT-----------HHHHHHHHHHHHHH-----TC---
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH-----------HHHHHHHHHHHHHh-----hccch
Confidence 23456788888888888888888888888888776553211100 00011111121110 00000
Q ss_pred hhhhHhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhH
Q 002814 620 NRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGV 681 (877)
Q Consensus 620 ~~~~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~ 681 (877)
....+++++|+..|+++.+ ..| +..++..+..+|.+.|++++|.+.|+++.+.+|.....
T Consensus 438 ~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACE--LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred hhhHhHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 0011588899999999987 445 56778999999999999999999999999888876544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.1e-21 Score=219.83 Aligned_cols=427 Identities=13% Similarity=0.058 Sum_probs=322.3
Q ss_pred HHHHhccCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCCh
Q 002814 130 HHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKV 209 (877)
Q Consensus 130 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 209 (877)
..+...+....++..+.+.+...+.++..+..+...+.+.|++++|++.|+.++..+ +.+..++..++.++...|++
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK---PDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHcCCH
Confidence 345556777788877777787777788899999999999999999999999999885 55677899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHcCCCCHHHH
Q 002814 210 DLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY------NLKPNLVTYNAVIDACGKGGVDFKHV 283 (877)
Q Consensus 210 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~g~~~~~a 283 (877)
++|...|+ ..... |+ .....+..+...+...+|+..++++... ...|+..... .+.... +.+.+
T Consensus 110 ~~A~~~~~-~~~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~ 179 (537)
T 3fp2_A 110 TDAMFDLS-VLSLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA----SFFGIF-DSHLE 179 (537)
T ss_dssp HHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH----HHHHTS-CHHHH
T ss_pred HHHHHHHH-HHhcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH----HHHHhc-ChHHH
Confidence 99999996 44332 22 2233455666777788999999998653 1234444333 344444 55655
Q ss_pred HHHHHHHHHCCCCCCHH-HHHHHHHHHHh--------CCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHc
Q 002814 284 VEIFDDMLRNGVQPDRI-TFNSLLAVCSR--------GGLWEAARNLFNEMVHRGIDQD-------IFTYNTLLDAICKG 347 (877)
Q Consensus 284 ~~~~~~m~~~g~~p~~~-t~~~ll~~~~~--------~g~~~~A~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~ 347 (877)
...+..... ..+... ....+...+.. .|++++|..+|+++.+.... + ..++..+...+...
T Consensus 180 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 180 VSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhc
Confidence 554443322 122222 22333333222 25789999999999876422 2 33577777888899
Q ss_pred CCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 348 AQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVC 427 (877)
Q Consensus 348 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 427 (877)
|++++|++.|+++.+. .|+...|..+...|...|++++|++.|+++.+.. +.+..++..+...+...|++++|+..|
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999886 4568889999999999999999999999998774 556888999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---
Q 002814 428 KEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG--- 504 (877)
Q Consensus 428 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g--- 504 (877)
+++.+.. +.+..+|..+...|.+.|++++|...|+++.+.. +.+...+..+...|...|++++|.+.|+++.+..
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 9998865 5567889999999999999999999999998863 4467789999999999999999999999987642
Q ss_pred --CCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhh
Q 002814 505 --LKADVVLYSALIDALCKN----------GLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLG 572 (877)
Q Consensus 505 --~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~ 572 (877)
.......+..+...+.+. |++++|+..|+++.+.. ..+..++..+..+|.+.|++++|+..++++++
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 112233355556777787 99999999999998753 23567899999999999999999999999999
Q ss_pred hhhhhh
Q 002814 573 KQKESA 578 (877)
Q Consensus 573 ~~~~~~ 578 (877)
..+...
T Consensus 491 ~~~~~~ 496 (537)
T 3fp2_A 491 LARTMD 496 (537)
T ss_dssp HC--CH
T ss_pred hCCCcH
Confidence 887654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-17 Score=180.81 Aligned_cols=330 Identities=15% Similarity=0.089 Sum_probs=209.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
++.+..+...+.+.|++++|+..|+.++... +.+..++..++.++...|++++|...|+++++.... +..++..+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 78 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHH
Confidence 4556677888888999999999999998875 455678888999999999999999999999886433 678888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYNLKP----NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR 311 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 311 (877)
..|...|++++|+..|+++.+. .| +...+..+.... . ...+..+...+..
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~--------~----------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD--------E----------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH--------H----------------HHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH--------H----------------HHHHHHHHHHHHH
Confidence 9999999999999999998874 34 223333331100 0 0012223344555
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002814 312 GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNM 391 (877)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 391 (877)
.|++++|..+++++.+.. +.+..++..+...|.+.|++++|++.++++.+.. +.+..++..+...|...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555555542 2245555555555556666666666665555442 22455555556666666666666666
Q ss_pred HHHHHHCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCH
Q 002814 392 FSEMKFLGIGLDRVSYN------------TVLSIYAKLGRFEEALLVCKEMESSGIRKDA----VTYNALLGGYGKQGKY 455 (877)
Q Consensus 392 ~~~m~~~g~~pd~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~ 455 (877)
|++..+.. +.+...+. .+...+.+.|++++|...++++.+.. +.+. ..+..+...|.+.|++
T Consensus 211 ~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 211 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCH
Confidence 66555442 22222222 22455677777777777777776643 2233 2244566677777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 456 DEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK 521 (877)
Q Consensus 456 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 521 (877)
++|...|++..+.. +.+..+|..+...|...|++++|.+.|+++.+... -+...+..+..+...
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Confidence 77777777776652 33567777777777777777777777777776542 245555555555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-16 Score=178.43 Aligned_cols=353 Identities=14% Similarity=0.040 Sum_probs=292.7
Q ss_pred ChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCC
Q 002814 155 GADDYTFLLRELGN----RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGR----LGKVDLAKNIFETALNEGYGN 226 (877)
Q Consensus 155 ~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~ 226 (877)
+++....+...|.. .+++++|+..|+.+...+ +...+..|...|.. .+++++|.+.|+++.+.|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 45566667777776 789999999999988764 24577778888888 899999999999998864
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCCCC
Q 002814 227 TVYAFSALISAYGR----SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK----GGVDFKHVVEIFDDMLRNGVQPD 298 (877)
Q Consensus 227 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~~a~~~~~~m~~~g~~p~ 298 (877)
+..++..|...|.. .+++++|+.+|++..+.| +...+..+...|.. .+ ++++|++.|++..+.| +
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~a~~~~---~ 182 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR-DYVMAREWYSKAAEQG---N 182 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCC---C
Confidence 67788888888888 789999999999988764 67777778887776 66 8999999999998864 6
Q ss_pred HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHchhCCCCCCHH
Q 002814 299 RITFNSLLAVCSR----GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK----GAQMDLAFEIMAEMPAKNISPNVV 370 (877)
Q Consensus 299 ~~t~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~ 370 (877)
...+..|...|.. .+++++|.++|++..+.| +...+..|...|.. .+++++|+++|++..+.| +..
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 256 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSI 256 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHH
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 7788888888887 889999999999998875 67788888888886 789999999999988764 667
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHH
Q 002814 371 TYSTMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKL-----GRFEEALLVCKEMESSGIRKDAVT 441 (877)
Q Consensus 371 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~ 441 (877)
.+..+...|.. .++.++|+++|++..+.| +...+..|...|... ++.++|+..|++..+.| +...
T Consensus 257 a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a 330 (490)
T 2xm6_A 257 AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATA 330 (490)
T ss_dssp HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHH
Confidence 77788888888 889999999999988765 566777788888877 89999999999988865 5677
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 442 YNALLGGYGKQG---KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSA 514 (877)
Q Consensus 442 ~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 514 (877)
+..+...|.+.| +.++|.+.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..
T Consensus 331 ~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~ 404 (490)
T 2xm6_A 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQ 404 (490)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHH
Confidence 788888887766 7889999999988874 67888888888888 789999999999998865 6778888
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHCCC
Q 002814 515 LIDALCK----NGLVESAVSLLDEMTKEGI 540 (877)
Q Consensus 515 li~~~~~----~g~~~~A~~~~~~m~~~g~ 540 (877)
|...|.+ .++.++|...|++..+.+.
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8888888 7899999999999988653
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-17 Score=178.52 Aligned_cols=331 Identities=13% Similarity=0.119 Sum_probs=254.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 002814 193 GKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA 272 (877)
Q Consensus 193 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 272 (877)
...+..++..+...|++++|...|+++++..+. +..++..+...+...|++++|+..|+++.+.... +...|..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 345666777778888888888888888776433 5777777888888888888888888887764322 56677777777
Q ss_pred HHcCCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 002814 273 CGKGGVDFKHVVEIFDDMLRNGVQP----DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA 348 (877)
Q Consensus 273 ~~~~g~~~~~a~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 348 (877)
+...| ++++|...|+++.+. .| +...+..+...+. ...+..+...+...|
T Consensus 81 ~~~~~-~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 81 LLKQG-KLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHT-CHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHcC-ChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 77777 788888888877764 33 2222222222110 122444577889999
Q ss_pred CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 349 QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCK 428 (877)
Q Consensus 349 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 428 (877)
++++|+++|+++.+... .+...+..+...|...|++++|+..++++.+.. +.+..++..+...|...|++++|...|+
T Consensus 135 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999987643 478899999999999999999999999999874 5678899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHH
Q 002814 429 EMESSGIRKDAVTYNA------------LLGGYGKQGKYDEVRRMFEQMKADCVSPNL----LTYSTLIDVYSKGGLYKE 492 (877)
Q Consensus 429 ~m~~~g~~~~~~~~~~------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~ 492 (877)
+..+.. +.+...+.. +...+.+.|++++|...|+++.+.... +. ..+..+..+|.+.|++++
T Consensus 213 ~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 213 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHH
Confidence 998765 445554432 366799999999999999999886322 33 335568889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcC
Q 002814 493 AMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSA 558 (877)
Q Consensus 493 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 558 (877)
|...|+++.+.. +.+..+|..+...|.+.|++++|...|+++.+. .|+ ...+..+..+....+
T Consensus 291 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 291 AIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHH
Confidence 999999999864 347889999999999999999999999999985 455 556777776665443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-16 Score=175.38 Aligned_cols=364 Identities=12% Similarity=0.056 Sum_probs=315.0
Q ss_pred HHHHHHHHHccccCCChHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 002814 176 IQCFAFAVKREERKNDQGKLASAMISILGR----LGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR----SGYCQEA 247 (877)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A 247 (877)
++.+..+...+ +...+..+...|.. .+++++|...|+++.+.| +..++..|...|.. .+++++|
T Consensus 27 ~~~~~~~a~~g-----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 27 LEQLKQKAESG-----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp HHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 44455444432 34566777888877 899999999999998874 67889999999998 8999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHH
Q 002814 248 ISVFNSMKRYNLKPNLVTYNAVIDACGK----GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR----GGLWEAAR 319 (877)
Q Consensus 248 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~ 319 (877)
+++|++..+.| +...+..|...|.. .+ ++++|++.|++..+.| +...+..|...|.. .+++++|.
T Consensus 99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV-DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99999998864 67788888888877 67 9999999999999875 67788888888887 78999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 002814 320 NLFNEMVHRGIDQDIFTYNTLLDAICK----GAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK----AGRLDDALNM 391 (877)
Q Consensus 320 ~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~ 391 (877)
+.|++..+.| +...+..|...|.+ .+++++|++.|++..+.| +...+..+...|.. .+++++|+++
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999975 78899999999998 899999999999998874 67888889999987 8999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHH
Q 002814 392 FSEMKFLGIGLDRVSYNTVLSIYAK----LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ-----GKYDEVRRMF 462 (877)
Q Consensus 392 ~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~ 462 (877)
|++..+.| +...+..+...|.. .++.++|+..|++..+.| +...+..+...|... ++.++|...|
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 99998765 56777888888888 899999999999998765 677888888899887 8999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHH
Q 002814 463 EQMKADCVSPNLLTYSTLIDVYSKGG---LYKEAMQIFREFKQAGLKADVVLYSALIDALCK----NGLVESAVSLLDEM 535 (877)
Q Consensus 463 ~~m~~~g~~p~~~t~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m 535 (877)
++..+.| +...+..|...|...| +.++|.+.|++..+.| +...+..|...|.. .+++++|+..|++.
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9999875 6778888999998877 7899999999999874 78899999999999 89999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhh----cCChhhhHHHHHHHhhhhh
Q 002814 536 TKEGIRPNVVTYNSIIDAFGR----SATTECTVDDVERDLGKQK 575 (877)
Q Consensus 536 ~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~l~~~~ 575 (877)
.+.| +...+..|...|.+ .++.++|+..++++++..+
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9875 57788888888887 8999999999999999873
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-16 Score=179.91 Aligned_cols=415 Identities=11% Similarity=0.081 Sum_probs=309.9
Q ss_pred cCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 002814 152 KLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAF 231 (877)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 231 (877)
.+.+.+.|..++. +.+.|++++|+.+|++++... |.+..+|...+..+.+.|++++|+++|++++... |++..|
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~---P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw 82 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF---PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLW 82 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHH
Confidence 4556777888887 477899999999999999884 5667899999999999999999999999998864 578888
Q ss_pred HHHHHHH-HhcCCHHHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHCCC
Q 002814 232 SALISAY-GRSGYCQEAIS----VFNSMKR-YNLKP-NLVTYNAVIDACGK---------GGVDFKHVVEIFDDMLRNGV 295 (877)
Q Consensus 232 ~~li~~~-~~~g~~~~A~~----~~~~m~~-~g~~p-~~~~~~~ll~~~~~---------~g~~~~~a~~~~~~m~~~g~ 295 (877)
..++... ...|+.++|.+ +|++... .|..| +...|...+....+ .| +++.|..+|++.++...
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~a~~~y~~al~~P~ 161 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQ-RITAVRRVYQRGCVNPM 161 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHH-HHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHh-HHHHHHHHHHHHHhchh
Confidence 8887633 45677777665 7777654 35444 56778777776544 56 79999999999988311
Q ss_pred CCCHHHHHHHHHHH-------------HhCCCHHHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHH
Q 002814 296 QPDRITFNSLLAVC-------------SRGGLWEAARNLFNEMV------HRG---IDQD--------IFTYNTLLDAIC 345 (877)
Q Consensus 296 ~p~~~t~~~ll~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~~~--------~~~~~~li~~~~ 345 (877)
......|....... .+.++++.|..++.++. +.. ++|+ ...|...+....
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 11123343322211 12456777887777632 211 2333 346666654433
Q ss_pred Hc----CCH----HHHHHHHHHchhCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHCCCCCC
Q 002814 346 KG----AQM----DLAFEIMAEMPAKNISPNVVTYSTMIDGYAK-------AGRLD-------DALNMFSEMKFLGIGLD 403 (877)
Q Consensus 346 ~~----g~~----~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~pd 403 (877)
.. ++. +.|+.+|++..... +-+...|..++..+.+ .|+++ +|.++|++..+.-.+-+
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~ 320 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 320 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc
Confidence 32 222 47788898888753 3378889888888876 69987 89999999986322446
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 404 RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDA-VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLID 482 (877)
Q Consensus 404 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 482 (877)
...|..++..+.+.|++++|..+|+++++.. +.+. ..|..++..+.+.|++++|.++|++..+.. +.+...|...+.
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~ 398 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHH
Confidence 8889999999999999999999999999864 3343 589999999999999999999999998763 223333333332
Q ss_pred H-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhhcC
Q 002814 483 V-YSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG-IRPN--VVTYNSIIDAFGRSA 558 (877)
Q Consensus 483 ~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g 558 (877)
. +...|+.++|..+|++.++.. +-+...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...|...+....+.|
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2 346899999999999998764 2368899999999999999999999999999863 2332 458888888889999
Q ss_pred ChhhhHHHHHHHhhhhhhh
Q 002814 559 TTECTVDDVERDLGKQKES 577 (877)
Q Consensus 559 ~~~~a~~~~~~~l~~~~~~ 577 (877)
+.+.+..+..++++..|+.
T Consensus 478 ~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 478 DLASILKVEKRRFTAFREE 496 (530)
T ss_dssp CHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHCchh
Confidence 9999999999999988854
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-15 Score=175.17 Aligned_cols=362 Identities=11% Similarity=0.105 Sum_probs=271.7
Q ss_pred cCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 002814 152 KLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAF 231 (877)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 231 (877)
+..+|+.....+++|...|.+.+|++++++++..+....++..+.+.++.+..+. +.....++..+..+. ..
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~ 1052 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DA 1052 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cH
Confidence 3456888888999999999999999999999855432234555666677666666 445555555444321 13
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002814 232 SALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR 311 (877)
Q Consensus 232 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 311 (877)
.-+...+...|.+++|..+|++... .....+.++. ..+ ++++|.+++++. -+..+|..+..++..
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~-nldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIG-NLDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHh-hHHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 4477788889999999999998632 3344455544 445 889999998865 257788899999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002814 312 GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNM 391 (877)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 391 (877)
.|++++|++.|.+. .|...|..++.+|.+.|++++|++.|....+.. ++....+.++.+|++.+++++...+
T Consensus 1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH
Confidence 99999999998664 378888889999999999999999998877653 3333344589999999998854333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 002814 392 FSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS 471 (877)
Q Consensus 392 ~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 471 (877)
. . .++...|..+...|...|++++|...|... ..|..+...|.+.|++++|.+.+++..
T Consensus 1190 I----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~----- 1248 (1630)
T 1xi4_A 1190 I----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN----- 1248 (1630)
T ss_pred H----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----
Confidence 2 1 456677778999999999999999999885 488899999999999999999998873
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 002814 472 PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSI 550 (877)
Q Consensus 472 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l 550 (877)
+..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+.. .+... .|+-|
T Consensus 1249 -n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftEL 1320 (1630)
T 1xi4_A 1249 -STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTEL 1320 (1630)
T ss_pred -CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHH
Confidence 6799999999999999999998876643 246777889999999999999999999887753 34433 56555
Q ss_pred HHHH--hhcCChhhhHHHHHHHhhh
Q 002814 551 IDAF--GRSATTECTVDDVERDLGK 573 (877)
Q Consensus 551 i~~~--~~~g~~~~a~~~~~~~l~~ 573 (877)
..+| .+-+++.++++.+...+..
T Consensus 1321 aiLyaKy~peklmEhlk~f~~rini 1345 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRVNI 1345 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccc
Confidence 5444 4556677777766655543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-16 Score=178.00 Aligned_cols=433 Identities=10% Similarity=0.046 Sum_probs=248.5
Q ss_pred HHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 002814 179 FAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYN 258 (877)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 258 (877)
|+.+++.+ |.+..+|..++. +.+.|++++|+.+|+++++.. +.+...|..++..+.+.|++++|..+|+++...
T Consensus 2 le~al~~~---P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~- 75 (530)
T 2ooe_A 2 AEKKLEEN---PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK- 75 (530)
T ss_dssp HHHHHHHC---TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT-
T ss_pred hhhHhhhC---CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Confidence 45566664 556778888888 478899999999999999864 447889999999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHH-HcCCCCHHHHH----HHHHHHHH-CCCCC-CHHHHHHHHHHHHh---------CCCHHHHHHHH
Q 002814 259 LKPNLVTYNAVIDAC-GKGGVDFKHVV----EIFDDMLR-NGVQP-DRITFNSLLAVCSR---------GGLWEAARNLF 322 (877)
Q Consensus 259 ~~p~~~~~~~ll~~~-~~~g~~~~~a~----~~~~~m~~-~g~~p-~~~t~~~ll~~~~~---------~g~~~~A~~~~ 322 (877)
.|+...|...+... ...| +.+.|. ++|++.+. .|..| +...|...+....+ .|+++.|+.+|
T Consensus 76 -~p~~~lw~~~~~~~~~~~~-~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 76 -VLHIDLWKCYLSYVRETKG-KLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp -CCCHHHHHHHHHHHHHHTT-TSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 36887887777543 3345 555554 47777764 35444 45667777766554 67889999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------
Q 002814 323 NEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK------ 396 (877)
Q Consensus 323 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~------ 396 (877)
++.++.........|..........|. ..+..++.+ +.++++.|..+++++.
T Consensus 154 ~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~~---------------------~~~~~~~A~~~~~~~~~~~~~l 211 (530)
T 2ooe_A 154 QRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKMIED---------------------RSRDYMNARRVAKEYETVMKGL 211 (530)
T ss_dssp HHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHHT---------------------THHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHHHHH---------------------hhHHHHHHHHHHHHHHHHHHHh
Confidence 998873111112334333221111110 001111100 1223344444443311
Q ss_pred HCC---CCCC--------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH------
Q 002814 397 FLG---IGLD--------RVSYNTVLSIYAKL----GRF----EEALLVCKEMESSGIRKDAVTYNALLGGYGK------ 451 (877)
Q Consensus 397 ~~g---~~pd--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~------ 451 (877)
+.. +.|+ ...|...+...... ++. +.+..+|++.+... +.+...|..++..+.+
T Consensus 212 ~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 212 DRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhh
Confidence 110 1222 12333333322221 121 35556666665543 4456666666666554
Q ss_pred -cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc
Q 002814 452 -QGKYD-------EVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD-VVLYSALIDALCKN 522 (877)
Q Consensus 452 -~g~~~-------~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 522 (877)
.|+++ +|..+|++.++.-.+.+...|..++..+.+.|++++|..+|+++++.... + ...|..++..+.+.
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHh
Confidence 56655 66777776665212334666666666666777777777777777664211 2 24666666666667
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHH
Q 002814 523 GLVESAVSLLDEMTKEGIRPNVVTYNSIIDA-FGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQI 601 (877)
Q Consensus 523 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (877)
|++++|.++|++..+.. ..+...|...... +...|+.++|...++++++..|+...+ |...
T Consensus 370 ~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~-----------------~~~~ 431 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY-----------------VLAY 431 (530)
T ss_dssp HHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHH-----------------HHHH
T ss_pred cCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHH-----------------HHHH
Confidence 77777777777766542 1122222222211 234667777777777777666544311 1111
Q ss_pred HHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 002814 602 IKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLK-IKPN--VVTFSAILNACSRCNSFEDASMLLEELRLFDN 676 (877)
Q Consensus 602 ~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g-~~Pd--~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~ 676 (877)
+.++. ..|+.++|..+|++....+ ..|+ ...|...+......|+.+.+.++++.+.+..|
T Consensus 432 ~~~~~---------------~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 432 IDYLS---------------HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHT---------------TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHH---------------hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 11111 0124455666666666532 2332 33566666666677888888888877775554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.4e-17 Score=173.01 Aligned_cols=286 Identities=10% Similarity=0.017 Sum_probs=208.2
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 002814 154 CGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSA 233 (877)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 233 (877)
.+++.+..++..+...|++++|+++|+.++...+ .+...+..++.++...|++++|..+++++++.... +..+|..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 95 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP---FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFA 95 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 4566777788888889999999999999988763 33446677788889999999999999999886543 6788888
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 002814 234 LISAYGRSG-YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG 312 (877)
Q Consensus 234 li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 312 (877)
+...+...| ++++|+..|+++.+.... +...|..+...+...| ++++|++.|+++++.... +...+..+...|...
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVES-EHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 999999999 899999999999875432 5677888888888888 899999999988876433 455666678888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC--------CCCCHHHHHHHHHHHHHcCC
Q 002814 313 GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN--------ISPNVVTYSTMIDGYAKAGR 384 (877)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~pd~~~~~~li~~~~~~g~ 384 (877)
|++++|...++++.+.. +.+..++..+...|.+.|++++|++.|++..+.. ...+..++..+...|.+.|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 88888888888887764 3356777777778888888888887777765421 12234566666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY 449 (877)
Q Consensus 385 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 449 (877)
+++|+..|++..+.. +.+...+..+...|.+.|++++|...|+++.+.. +.+...+..+..++
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 666666666666543 3345556666666666666666666666665543 33455555555555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=8e-17 Score=172.26 Aligned_cols=290 Identities=12% Similarity=-0.004 Sum_probs=193.8
Q ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 262 NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLL 341 (877)
Q Consensus 262 ~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 341 (877)
+...+..+...+...| ++++|+++|+++++.... +...+..++..+...|++++|..+++++.+.. +.+...|..+.
T Consensus 21 ~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 21 NLDVVVSLAERHYYNC-DFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCTTHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 3334445555555556 666666666666554221 33344445555666666666666666666543 22455666666
Q ss_pred HHHHHcC-CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 002814 342 DAICKGA-QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420 (877)
Q Consensus 342 ~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 420 (877)
..+...| ++++|++.|++..+... .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 6666666 66667777766665432 245666777777777777777777777776653 33445566677777777778
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHH
Q 002814 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC--------VSPNLLTYSTLIDVYSKGGLYKE 492 (877)
Q Consensus 421 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~~t~~~li~~~~~~g~~~~ 492 (877)
++|...++++.+.. +.+..++..+...|.+.|++++|...|+++.+.. ...+..++..+..+|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88887777777664 5567777778888888888888888887776531 13345678888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-hhcCCh
Q 002814 493 AMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDAF-GRSATT 560 (877)
Q Consensus 493 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~-~~~g~~ 560 (877)
|...|+++.+... .+...|..+...|.+.|++++|.+.|+++.+. .| +...+..+..++ ...|+.
T Consensus 255 A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCch
Confidence 8888888877653 36778888888888889999999888888764 34 455777777766 455543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-14 Score=171.40 Aligned_cols=386 Identities=10% Similarity=0.116 Sum_probs=283.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 002814 193 GKLASAMISILGRLGKVDLAKNIFETALNEGY--GNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVI 270 (877)
Q Consensus 193 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 270 (877)
+.-....+.+|...|...+|+++++++.-.+. ..+....+.|+....+. +..+..+..++.... + ..-+.
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA 1056 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIA 1056 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHH
Confidence 33456778888899999999999999984321 23556777788777777 446666666655431 2 33366
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 002814 271 DACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQM 350 (877)
Q Consensus 271 ~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 350 (877)
..+...| .+++|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+..++.+.|++
T Consensus 1057 ~Iai~lg-lyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1057 NIAISNE-LFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHhCC-CHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 6677888 8999999999852 12233333433 668889998888755 2578888999999999999
Q ss_pred HHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 351 DLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (877)
Q Consensus 351 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 430 (877)
++|++.|.+. -|...|.-++.+|.+.|++++|++.|...++.. ++....+.++.+|++.+++++....
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f---- 1189 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF---- 1189 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----
Confidence 9999999764 277888889999999999999999998877663 3433444588899999888853333
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 002814 431 ESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVV 510 (877)
Q Consensus 431 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 510 (877)
++ .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. .+..
T Consensus 1190 I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A 1190 IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTR 1251 (1630)
T ss_pred Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHH
Confidence 22 456677778999999999999999999885 47889999999999999999999876 3678
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchh
Q 002814 511 LYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKD 590 (877)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 590 (877)
+|..+..+|...|++..|......+ .-+...+..++..|.+.|.+++|+.+++.+++..+...
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~------------ 1314 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLERAHM------------ 1314 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh------------
Confidence 9999999999999988888766543 33666777899999999999999999999888765432
Q ss_pred hhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHcCCCHHHH
Q 002814 591 VQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP------NVVTFSAILNACSRCNSFEDA 664 (877)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~P------d~~t~~~ll~a~~~~g~~~eA 664 (877)
+.+..+..++.+. .-++..+++++|..-.. +.| +...|.-+...|.+.|+++.|
T Consensus 1315 -----gmftELaiLyaKy-------------~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1315 -----GMFTELAILYSKF-------------KPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred -----HHHHHHHHHHHhC-------------CHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 2333444444321 11255667777775432 333 455688888888899999888
Q ss_pred HHHH
Q 002814 665 SMLL 668 (877)
Q Consensus 665 ~~~~ 668 (877)
....
T Consensus 1375 ~~tm 1378 (1630)
T 1xi4_A 1375 IITM 1378 (1630)
T ss_pred HHHH
Confidence 7543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-16 Score=178.56 Aligned_cols=109 Identities=10% Similarity=-0.063 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhccccchHHHHHHHH
Q 002814 625 EILCILGVFQKMHKLKIKPNV--VTFSAILN-ACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLF 701 (877)
Q Consensus 625 ~~~~A~~~~~~m~~~g~~Pd~--~t~~~ll~-a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~ 701 (877)
++++|++.|++.++....+.. ..+..+.. .....|+.++|+..|+++.+++|.... ..+....+.+++
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~---------~~~~~~~l~~~~ 419 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE---------KEKMKDKLQKIA 419 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH---------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH---------HHHHHHHHHHHH
Confidence 445555566665553222211 12233332 235679999999999999998887654 234556778888
Q ss_pred HHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 702 DEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 702 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
++.++.+| .+..+|+.|+.+|...|++++|.+.++++++.+
T Consensus 420 ~~~l~~~p-~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 420 KMRLSKNG-ADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999 788999999999999999999999999998764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-17 Score=178.07 Aligned_cols=305 Identities=13% Similarity=-0.030 Sum_probs=159.9
Q ss_pred ccCCHHHHHH-HHHHHHHccccCCC-hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 002814 168 NRGEWSKAIQ-CFAFAVKREERKND-QGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQ 245 (877)
Q Consensus 168 ~~g~~~~A~~-~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 245 (877)
..|++++|++ .|..++......+. ....+..++..+.+.|++++|...|+++++... .+..+|..+...|.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHH
Confidence 4467777777 77666554322111 133456677777788888888888888777643 36677777777788888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002814 246 EAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEM 325 (877)
Q Consensus 246 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m 325 (877)
+|+..|+++.+.... +..++..+...+...| ++++|++.|++++..... +...+..+... .. .
T Consensus 116 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 116 LAISALRRCLELKPD-NQTALMALAVSFTNES-LQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h
Confidence 888888877764432 6677777777777777 778888888777765322 11111111000 00 0
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 002814 326 VHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISP-NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR 404 (877)
Q Consensus 326 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 404 (877)
. . ....+..+...+ ..|++++|++.|+++.+..... +..++..+...|.+.|++++|+..|+++.... +.+.
T Consensus 179 ~----~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 179 A----G-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred h----c-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 0 0 000011111122 4455555555555554432111 34455555555555555555555555554442 2334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----------CCH
Q 002814 405 VSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS----------PNL 474 (877)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p~~ 474 (877)
.++..+...|.+.|++++|+..|+++.+.. +.+..++..+...|.+.|++++|...|+++.+.... ...
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 555555555555555555555555555443 334555555555555556666665555555442110 014
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 002814 475 LTYSTLIDVYSKGGLYKEAMQIFR 498 (877)
Q Consensus 475 ~t~~~li~~~~~~g~~~~A~~~~~ 498 (877)
.+|..+..+|...|+.++|..+++
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHH
Confidence 556666666666666666655554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-17 Score=176.02 Aligned_cols=308 Identities=13% Similarity=0.053 Sum_probs=171.6
Q ss_pred cCCHHHHHH-HHHHHHhCCCC-C--CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002814 241 SGYCQEAIS-VFNSMKRYNLK-P--NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (877)
Q Consensus 241 ~g~~~~A~~-~~~~m~~~g~~-p--~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 316 (877)
.|++++|++ .|++....... | +...+..+...+.+.| ++++|+.+|+++++... .+..++..+..++...|+++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEG-DLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTT-CHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHH
Confidence 355556655 55544432111 1 2334555555555666 66666666666665432 24455555666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (877)
Q Consensus 317 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (877)
+|...|+++.+.. +.+..++..+...|...|++++|++.|+++...... +...+..+... ... .
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~-------~ 179 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AGG-------A 179 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-----------------------
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hhh-------h
Confidence 6666666665543 224555666666666666666666666655544211 11111100000 000 0
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 002814 397 FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK--DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL 474 (877)
Q Consensus 397 ~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 474 (877)
.+ ...+..+... ...|++++|+..|+++.+.. +. +..++..+...|.+.|++++|...|+++.+.. +.+.
T Consensus 180 ----~~-~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 180 ----GL-GPSKRILGSL-LSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp -----------CTTHHH-HHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred ----cc-cHHHHHHHHH-hhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 00 0011112222 26667777777777666553 22 46667777777777777777777777766642 3346
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC----------CH
Q 002814 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP----------NV 544 (877)
Q Consensus 475 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------~~ 544 (877)
.+|..+...|.+.|++++|...|+++.+.. +.+...+..+..+|.+.|++++|...|+++.+..... ..
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 677777777777777777777777776654 2356677777777777778888877777776531110 14
Q ss_pred HHHHHHHHHHhhcCChhhhHHHHHHHhhhhh
Q 002814 545 VTYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (877)
Q Consensus 545 ~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~ 575 (877)
.+|..+..+|.+.|+.++|...+.++++...
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 6788888888888888888877777776644
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.1e-17 Score=173.33 Aligned_cols=283 Identities=15% Similarity=0.195 Sum_probs=117.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHH
Q 002814 203 LGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKH 282 (877)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~ 282 (877)
+-+.|++++|.++++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...| ++++
T Consensus 13 l~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g-~~Ee 79 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG-NWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCC-CHHH
Confidence 346777888888888872 2348888888888888888888888653 46668888888888888 8888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 002814 283 VVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (877)
Q Consensus 283 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (877)
|+.+++..++. .++..+.+.|+.+|.+.|+++++.++++ .|+..+|+.+.+.|...|++++|...|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 88877766653 3456778888888888888888887774 256678888888888888888888888876
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002814 363 KNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTY 442 (877)
Q Consensus 363 ~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 442 (877)
..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|......+ ..++.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhH
Confidence 25888888888888888888888877 26788888888888888888885554432 2344445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHH
Q 002814 443 NALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKG--GLYKEAMQIFREFKQAGLKA------DVVLYSA 514 (877)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p------~~~~~~~ 514 (877)
..++..|.+.|++++|..+++..+... .-....|+.|...|++- +++.+.++.|..- .++++ +...|..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHH
Confidence 567888888888888888888877653 44567777777777654 3455555554321 11111 2335566
Q ss_pred HHHHHHHcCChHHHHH
Q 002814 515 LIDALCKNGLVESAVS 530 (877)
Q Consensus 515 li~~~~~~g~~~~A~~ 530 (877)
++-.|.+.++++.|..
T Consensus 288 ~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 288 LVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhchHHHHHH
Confidence 6666666666666654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-15 Score=169.82 Aligned_cols=386 Identities=10% Similarity=-0.058 Sum_probs=224.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-----
Q 002814 227 TVYAFSALISAYGRSGYCQEAISVFNSMKRY-----N--LKP-NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN----- 293 (877)
Q Consensus 227 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~----- 293 (877)
.+..||.|...+...|++++|++.|++..+. + ..| ...+|+.+..+|...| ++++|...+++..+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g-~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG-RLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhHhcc
Confidence 4567888888888999999999999887542 1 122 4567888888888888 888888888877642
Q ss_pred C-CC-CCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHchhCCCC
Q 002814 294 G-VQ-PDRITFNSLLAVCSR--GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAI---CKGAQMDLAFEIMAEMPAKNIS 366 (877)
Q Consensus 294 g-~~-p~~~t~~~ll~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~ 366 (877)
+ .. ....++..+..++.. .+++++|+..|++.++... .+...+..+..++ ...++.++|++.|++..+...
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 1 11 134556555555444 3467888888888877542 2455555555443 345666777777777666432
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002814 367 PNVVTYSTMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTY 442 (877)
Q Consensus 367 pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 442 (877)
.+...+..+...+.. .|++++|.+++++..... +.+...+..+...|...|++++|+..+++..+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 245555555544443 456677777777776654 4456677777777888888888888887777654 4456666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 443 NALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (877)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 522 (877)
..+...|...+....+... ..........+..++|...|++..+... .+...+..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRE----------------NGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhHHH----------------HHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHh
Confidence 6666555332111110000 0000111122346778888888877542 3556778888889999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchh
Q 002814 523 GLVESAVSLLDEMTKEGIRPNVV--TYNSIID-AFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDN 599 (877)
Q Consensus 523 g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (877)
|++++|+..|++.++....+... .+..+.. ...+.|+.++|+..+.++++..++.... .
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~------------------~ 409 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK------------------E 409 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH------------------H
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH------------------H
Confidence 99999999999988754332221 2222222 2346678888888888887766543210 0
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcc
Q 002814 600 QIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQV 678 (877)
Q Consensus 600 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~ 678 (877)
. ....+..++++.+. ..| +..+|..|+.+|...|++++|.+.|+++++.++.+
T Consensus 410 ~------------------------~~~~l~~~~~~~l~--~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 410 K------------------------MKDKLQKIAKMRLS--KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp H------------------------HHHHHHHHHHHHHH--HCC-CTTHHHHHHHHHHHHHHCC----------------
T ss_pred H------------------------HHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 0 11122334444443 234 45567777777777777777777777776655543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-16 Score=166.42 Aligned_cols=270 Identities=8% Similarity=-0.007 Sum_probs=181.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc
Q 002814 303 NSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA 382 (877)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 382 (877)
..+...+...|++++|..+|+++.+.. +.+..++..+..++.+.|++++|++.|+++.+.. +.+..++..+...|...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 334444555555555555555554432 2244455555555555555555555555554432 12445555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHH-------------H-HH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 383 GRLDDALNMFSEMKFLGIGLDRVSYNT-------------V-LS-IYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (877)
Q Consensus 383 g~~~~A~~~~~~m~~~g~~pd~~~~~~-------------l-i~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 447 (877)
|++++|++.++++.+.. +.+...+.. + .. .+...|++++|...++++.+.. +.+..++..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 55555555555555442 111111111 1 22 3667788888998888888765 557888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 002814 448 GYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (877)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 527 (877)
.|.+.|++++|...++++.+.. +.+..+|..+...|...|++++|...|+++.+.. +.+...|..+...|.+.|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHH
Confidence 8999999999999999888763 3467888889999999999999999999988765 3367888889999999999999
Q ss_pred HHHHHHHHHHCCCCC-----------CHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhh
Q 002814 528 AVSLLDEMTKEGIRP-----------NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (877)
Q Consensus 528 A~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (877)
|.+.|+++.+..... +..+|..+..++.+.|+.++|...++++++..++..
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 999999988642111 356888899999999999999998888887766554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-16 Score=171.63 Aligned_cols=265 Identities=10% Similarity=-0.024 Sum_probs=180.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHH
Q 002814 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYA 380 (877)
Q Consensus 301 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 380 (877)
.+..+...+.+.|++++|+.+|+++++.. +.+..+|..+..+|.+.|++++|++.|+++.+... .+..+|..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 35555556666666666666666665543 23455666666666666666666666666655422 24566666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 002814 381 KAGRLDDALNMFSEMKFLGIGLD-----------RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK--DAVTYNALLG 447 (877)
Q Consensus 381 ~~g~~~~A~~~~~~m~~~g~~pd-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~ 447 (877)
..|++++|++.|+++.+.. |+ ...+..+...+.+.|++++|+..|+++.+.. +. +..++..+..
T Consensus 145 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGV 221 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHH
Confidence 6666666666666665431 11 2234455777888888888888888888765 33 6788888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 002814 448 GYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (877)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 527 (877)
.|.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 8889999999999998888763 4467888899999999999999999999988764 2357888889999999999999
Q ss_pred HHHHHHHHHHCCCC-----------CCHHHHHHHHHHHhhcCChhhhHHHHHHHhh
Q 002814 528 AVSLLDEMTKEGIR-----------PNVVTYNSIIDAFGRSATTECTVDDVERDLG 572 (877)
Q Consensus 528 A~~~~~~m~~~g~~-----------p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~ 572 (877)
|+..|+++.+.... .+..+|..+..++...|+.+.+.....+.+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 99999988763100 0256788899999999998887766555443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-16 Score=169.94 Aligned_cols=273 Identities=12% Similarity=0.013 Sum_probs=137.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 237 (877)
.+..+...+.+.|++++|++.|+.++... +.+..++..++.++.+.|++++|+..|+++++... .+..+|..+...
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD---PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 35556666666677777777776666653 33455666666666666777777777766666532 246666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002814 238 YGRSGYCQEAISVFNSMKRYNLKPNLV-TYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (877)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 316 (877)
|...|++++|+..|+++.+.. |+.. .+..+ ......+..+...+...|+++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~--------------------------~~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNK--------------------------KGSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC---------------------------------------------CCHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhh--------------------------ccchHHHHHHHHHHhhhhhHH
Confidence 666666666666666665421 1110 01000 000112223344444455555
Q ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 317 AARNLFNEMVHRGID-QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEM 395 (877)
Q Consensus 317 ~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 395 (877)
+|..+|+++.+.... .+..++..+...|.+.|++++|++.|+++.+... .+..+|..+..+|.+.|++++|+..|+++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555443211 1344555555555555555555555555444321 23445555555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002814 396 KFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI-----------RKDAVTYNALLGGYGKQGKYDEVRRMFEQ 464 (877)
Q Consensus 396 ~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 464 (877)
.+.. +.+..++..+..+|.+.|++++|...|+++.+..- ..+..+|..+..++...|+.+.+.++..+
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 4442 22344555555555555555555555555443210 00244566666666666666666555543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-17 Score=189.65 Aligned_cols=152 Identities=14% Similarity=0.225 Sum_probs=112.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 403 DRVSYNTVLSIYAKLGRFEEALLVCKEMES---SGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYST 479 (877)
Q Consensus 403 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 479 (877)
-..||++||++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356788888888888888888888877653 46788888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 002814 480 LIDVYSKGGL-YKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN------VVTYNSIID 552 (877)
Q Consensus 480 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~ 552 (877)
||.++++.|+ .++|.++|++|.+.|+.||.++|++++.++.+. ..++..+++ .-++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 8888888876 467788888888888888888888888766554 333333333 2244444 335556666
Q ss_pred HHhhcCC
Q 002814 553 AFGRSAT 559 (877)
Q Consensus 553 ~~~~~g~ 559 (877)
.|.+.+.
T Consensus 281 l~s~d~~ 287 (1134)
T 3spa_A 281 VYAKDGR 287 (1134)
T ss_dssp HHCCCSC
T ss_pred HHccCCC
Confidence 6666654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-17 Score=189.39 Aligned_cols=121 Identities=20% Similarity=0.226 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKF---LGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA 444 (877)
Q Consensus 368 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 444 (877)
-..|||+||++||+.|++++|.++|.+|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 457899999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002814 445 LLGGYGKQGK-YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGG 488 (877)
Q Consensus 445 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 488 (877)
||+++|+.|+ .++|.++|++|.+.|+.||..+|+.++.++.+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 9999999987 5788899999999999999999998887766543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-15 Score=159.81 Aligned_cols=278 Identities=10% Similarity=-0.020 Sum_probs=167.9
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
.+.+..+...+...|++++|+.+|+.++... +.+..++..++.++...|++++|.+.|+++.+... .+..++..+.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 96 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALA 96 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHH
Confidence 3456667788888999999999999998875 45567888889999999999999999999988743 3678888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhCC
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLA--VCSRGG 313 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~g 313 (877)
..|...|++++|++.|+++.+.... +...+..++..+ ++......+.. .+...|
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD-----------------------VDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC-------------------------------------------CCTTSHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH-----------------------HHHHHHHHHHHhHHHHHcc
Confidence 9999999999999999998875322 222222220000 00001111111 134445
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 314 LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFS 393 (877)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 393 (877)
++++|...++++.+.. +.+..++..+...|.+.|++++|++.++++.+... .+..+|..+...|...|++++|++.|+
T Consensus 153 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 153 EYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555442 12445555555555555555555555555544321 244555555666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------------CHHHHHHHHHHHHHcCCHHHHHHH
Q 002814 394 EMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK------------DAVTYNALLGGYGKQGKYDEVRRM 461 (877)
Q Consensus 394 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~------------~~~~~~~li~~~~~~g~~~~A~~~ 461 (877)
++.+.. +.+..++..+...|.+.|++++|...|+++.+.. +. +..+|..+..+|.+.|+.++|..+
T Consensus 231 ~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 231 RALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 555442 3345555666666666666666666666655432 11 355666666666666666666666
Q ss_pred HHHH
Q 002814 462 FEQM 465 (877)
Q Consensus 462 ~~~m 465 (877)
+++.
T Consensus 309 ~~~~ 312 (327)
T 3cv0_A 309 YAQN 312 (327)
T ss_dssp TTCC
T ss_pred HHHH
Confidence 6543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.3e-17 Score=173.92 Aligned_cols=287 Identities=14% Similarity=0.185 Sum_probs=132.8
Q ss_pred HcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 346 KGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALL 425 (877)
Q Consensus 346 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~ 425 (877)
+.|++++|.++++++. +..+|+.|+.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6678899999998883 335899999999999999999999965 3577789999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002814 426 VCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL 505 (877)
Q Consensus 426 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 505 (877)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 77776663 4567888899999999999999888875 367789999999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhc
Q 002814 506 KADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCS 585 (877)
Q Consensus 506 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~ 585 (877)
..|..++.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|...... +
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L-------------- 203 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-I-------------- 203 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-T--------------
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-H--------------
Confidence 47899999999999999999999988 2788999999999999999888442110 0
Q ss_pred cCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 002814 586 QDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDAS 665 (877)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~ 665 (877)
.+.||. ...++..|.+.|.+++|.
T Consensus 204 ------------------------------------------------------~~~ad~--l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 204 ------------------------------------------------------VVHADE--LEELINYYQDRGYFEELI 227 (449)
T ss_dssp ------------------------------------------------------TTCHHH--HHHHHHHHHHTTCHHHHH
T ss_pred ------------------------------------------------------HhCHhh--HHHHHHHHHHCCCHHHHH
Confidence 022222 224667778888888888
Q ss_pred HHHHHHHhcCCcchhHHHHHhhc---cccchHHHHHHHHHHHhhcCC----CcchhHHHHHHHHHHhcCchhhHHHHHHH
Q 002814 666 MLLEELRLFDNQVYGVAHGLLMG---YRDNIWVQALSLFDEVKLMDS----STASAFYNALTDMLWHFGQKRGAQLVVLE 738 (877)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 738 (877)
.+++.....++...++...+... |+.+++.++.++|.+.+.+.+ ..+...|..+.-+|.+.++++.|....-+
T Consensus 228 ~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 228 TMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 88888888887777776655332 366778888888776544322 12456799999999999999999876544
Q ss_pred h
Q 002814 739 G 739 (877)
Q Consensus 739 ~ 739 (877)
.
T Consensus 308 h 308 (449)
T 1b89_A 308 H 308 (449)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.5e-15 Score=153.17 Aligned_cols=253 Identities=13% Similarity=0.084 Sum_probs=149.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002814 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 316 (877)
-....|+++.|+..+++...............+.++|...| +++.|+..++.. -.|+..++..+...+...++.+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g-~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQR-KYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTT-CHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCC-CHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 34456666666666665543221111234445556666666 666666554331 2345556666666666667777
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 317 AARNLFNEMVHRGIDQ-DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEM 395 (877)
Q Consensus 317 ~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 395 (877)
+|.+.++++...+..| +...+..+..+|.+.|++++|++.|++ ..+...+..++..|.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777777766654323 455556666667777777777777766 235666666777777777777777777776
Q ss_pred HHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002814 396 KFLGIGLDRVSY---NTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP 472 (877)
Q Consensus 396 ~~~g~~pd~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 472 (877)
.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..+|.+.|++++|...|+++++.. +-
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 6652 332211 112233333466777777777666653 5566666667667777777777777777666542 33
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC
Q 002814 473 NLLTYSTLIDVYSKGGLYKE-AMQIFREFKQAG 504 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~~-A~~~~~~m~~~g 504 (877)
+..++..++..+...|+.++ +.++++++.+..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 56666666666666666654 456666666543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.4e-15 Score=153.61 Aligned_cols=219 Identities=17% Similarity=0.123 Sum_probs=101.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhC
Q 002814 234 LISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP-DRITFNSLLAVCSRG 312 (877)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~ 312 (877)
+.++|...|++++|+..++.. -.|+..++..+...+...+ +.++|++.+++++..+..| +...+..+..++...
T Consensus 40 l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~-~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~ 114 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS-RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD 114 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST-THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC-cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC
Confidence 344444444444444433321 1223344444444444444 4445555555444443222 223333333444445
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHH---HHHHHHHHHcCCHHHHH
Q 002814 313 GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTY---STMIDGYAKAGRLDDAL 389 (877)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~---~~li~~~~~~g~~~~A~ 389 (877)
|++++|++.+++ +.+...+..++..|.+.|++++|++.|+++.+.. |+.... ..++..+...|++++|+
T Consensus 115 g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~ 186 (291)
T 3mkr_A 115 QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAY 186 (291)
T ss_dssp TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHH
Confidence 555555554444 2344445555555555555555555555544432 221110 11222222335555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 002814 390 NMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE-VRRMFEQMKA 467 (877)
Q Consensus 390 ~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 467 (877)
.+|+++.+.. +.+...++.+..++.+.|++++|...|+++.+.. +.+..++..++..+...|+.++ +.++++++.+
T Consensus 187 ~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 187 YIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5555555442 3445555555555555555555555555555443 3445555555555555555543 3455555554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-13 Score=139.72 Aligned_cols=224 Identities=14% Similarity=0.092 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCC--CC----HHHHH
Q 002814 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS--PN----VVTYS 373 (877)
Q Consensus 300 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--pd----~~~~~ 373 (877)
..+..+...+...|++++|...|+++++.. .+..++..+..+|...|++++|++.|++..+.... ++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555666666666666666666666654 45566666666666666666666666665543111 11 45666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002814 374 TMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG 453 (877)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 453 (877)
.+...|.+.|++++|++.|+++... .++. ..+.+.|++++|...++++.... +.+...+..+...|...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 6666677777777777777766654 2332 33455566677777777766543 334556666666777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002814 454 KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLD 533 (877)
Q Consensus 454 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 533 (877)
++++|...|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+.. +.+...|..+...|.+.|++++|...|+
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777777777766542 3356666667777777777777777777766654 2346666667777777777777777777
Q ss_pred HHHH
Q 002814 534 EMTK 537 (877)
Q Consensus 534 ~m~~ 537 (877)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-13 Score=137.64 Aligned_cols=225 Identities=12% Similarity=0.111 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC--CC----HHH
Q 002814 228 VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ--PD----RIT 301 (877)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~--p~----~~t 301 (877)
...|..+...+...|++++|+..|+++.+.. .+..+|..+..++...| ++++|++.++++++.... ++ ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKG-EYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 3455555556666666666666666655544 35555555555555555 566666666555543111 11 244
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH
Q 002814 302 FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK 381 (877)
Q Consensus 302 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~ 381 (877)
+..+...+...|++++|...|+++.+.. ++. ..+.+
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~------------------------------------------~~~~~ 117 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA------------------------------------------DILTK 117 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH------------------------------------------HHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh------------------------------------------HHHHH
Confidence 4455555555555555555555555431 221 23344
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002814 382 AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRM 461 (877)
Q Consensus 382 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 461 (877)
.|++++|...++++.... +.+...+..+...+...|++++|+..|+++.+.. +.+..+|..+...|.+.|++++|...
T Consensus 118 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 444555555555554432 2233445555555555555555555555555443 33455555666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 462 FEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 462 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
|+++++.. +.+...|..+..+|.+.|++++|.+.|++..+
T Consensus 196 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 196 CNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66655542 22455566666666666666666666665554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-13 Score=152.68 Aligned_cols=374 Identities=12% Similarity=0.050 Sum_probs=250.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKV---DLAKNIFETALNEGYGNTVYAFSALISAY 238 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 238 (877)
+...+.+.|++++|++.|..+...+. + ..+..+..+|...|+. ++|.+.|+++.+. +..++..|...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~--~---~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY--S---EAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC--C---TGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC--H---HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 45567788999999999999987751 2 2445667777778888 9999999999864 556777777756
Q ss_pred HhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 239 GRSG-----YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDF---KHVVEIFDDMLRNGVQPDRITFNSLLAVCS 310 (877)
Q Consensus 239 ~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~---~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 310 (877)
...| ++++|+.+|++..+.|.. ..+..|...|...+ .. .++.+.+.+....|. ......|...|.
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~-~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYP-HSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYR 152 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCG-GGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHH
Confidence 5555 788999999999986643 26666666666544 22 345666666655443 445667777787
Q ss_pred hCCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc-
Q 002814 311 RGGLWEA----ARNLFNEMVHRGIDQDIFTYNTLLDAICKGA---QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA- 382 (877)
Q Consensus 311 ~~g~~~~----A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~- 382 (877)
..+.+++ +..+++.... .+...+..|..+|.+.| +.++|++.|++..+.|.. +...+..|...|...
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGG
T ss_pred cCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCC
Confidence 7775444 4444444333 23448889999999999 999999999999988744 666667777777655
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---
Q 002814 383 ---GRLDDALNMFSEMKFLGIGLDRVSYNTVLSI-Y--AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG--- 453 (877)
Q Consensus 383 ---g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--- 453 (877)
+++++|+++|++.. .| +...+..|... | ...+++++|+..|++..+.| +...+..|...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 79999999999987 43 55667777766 4 46899999999999999876 7788888888887 55
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cC
Q 002814 454 --KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK----NG 523 (877)
Q Consensus 454 --~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g 523 (877)
++++|.+.|++.. .| +...+..|...|.. ..++++|...|++..+.| +...+..|...|.. ..
T Consensus 300 ~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp CCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCC
T ss_pred CCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCC
Confidence 9999999999988 43 77888888888877 349999999999999877 34556667766664 45
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhh
Q 002814 524 LVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLG 572 (877)
Q Consensus 524 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~ 572 (877)
+.++|..+|+...+.|.. +.......+......++.++|.....+...
T Consensus 373 d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 899999999999988742 222222333333344455566665555444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=8.4e-13 Score=142.77 Aligned_cols=252 Identities=12% Similarity=0.058 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 405 VSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK-YDEVRRMFEQMKADCVSPNLLTYSTLIDV 483 (877)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 483 (877)
..|..+...+.+.|++++|+..++++++.. +.+..+|+.+...|.+.|+ +++|+..|+++++.. +-+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 445666666677777777777777776654 4566777777777777775 777777777777653 2356777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh-cCChhh
Q 002814 484 YSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR-SATTEC 562 (877)
Q Consensus 484 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~ 562 (877)
|...|++++|+..|+++++... -+...|..+..++.+.|++++|+..|+++++... -+...|+.+..++.+ .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchH
Confidence 7777777777777777777653 3677777777777788888888888888877432 245577777777766 444455
Q ss_pred hHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCC
Q 002814 563 TVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIK 642 (877)
Q Consensus 563 a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~ 642 (877)
|+. +.+++.|++.++ +.
T Consensus 254 A~~-------------------------------------------------------------~~el~~~~~Al~--l~ 270 (382)
T 2h6f_A 254 AVL-------------------------------------------------------------EREVQYTLEMIK--LV 270 (382)
T ss_dssp HHH-------------------------------------------------------------HHHHHHHHHHHH--HS
T ss_pred HHH-------------------------------------------------------------HHHHHHHHHHHH--HC
Confidence 420 112344444444 34
Q ss_pred C-CHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCcchhHHHHHhhcc-cc--------c-hHHHHHHHHHHH-hhcC
Q 002814 643 P-NVVTFSAILNACSRCN--SFEDASMLLEELRLFDNQVYGVAHGLLMGY-RD--------N-IWVQALSLFDEV-KLMD 708 (877)
Q Consensus 643 P-d~~t~~~ll~a~~~~g--~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~--------~-~~~~A~~~~~~~-~~~~ 708 (877)
| +...|..+..++.+.| ++++|.+.+.++ +.++....++..+...+ .. + .+++|+++++++ ++.+
T Consensus 271 P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 271 PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC
Confidence 5 3445666666666666 466777776666 55665555544443322 11 2 358888888888 8888
Q ss_pred CCcchhHHHHHHHHHHh
Q 002814 709 SSTASAFYNALTDMLWH 725 (877)
Q Consensus 709 ~~~~~~~~~~l~~~~~~ 725 (877)
| ....+|..++..+..
T Consensus 350 P-~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 350 T-IRKEYWRYIGRSLQS 365 (382)
T ss_dssp G-GGHHHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHH
Confidence 8 677888877776654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-13 Score=134.40 Aligned_cols=193 Identities=19% Similarity=0.091 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYA 415 (877)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 415 (877)
.+..+...+.+.|++++|+..|++..+.... +...+..+...|.+.|++++|+..|++..+.. +.+...+..+..++.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3344444444444444444444444333211 33344444444444444444444444444332 223333444444444
Q ss_pred Hc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 416 KL-----------GRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVY 484 (877)
Q Consensus 416 ~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 484 (877)
+. |++++|+..|++..+.. +.+...+..+...|...|++++|+..|++.++.. .+...+..+..+|
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 43 44444444444444432 2334444444444444444444444444444433 3444444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002814 485 SKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDE 534 (877)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (877)
...|++++|...|+++.+... .+...+..+...+.+.|++++|+..|++
T Consensus 162 ~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC-------------
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444444444444444444321 1334444444444444444444444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=9.5e-12 Score=128.89 Aligned_cols=226 Identities=10% Similarity=-0.028 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 334 IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYNT 409 (877)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 409 (877)
..++..+...|.+.|++++|++.|++..+. -+...+..+...|.. .+++++|++.|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 444455555555555555555555555542 134455555555555 556666666666555543 4555555
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002814 410 VLSIYAK----LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK----QGKYDEVRRMFEQMKADCVSPNLLTYSTLI 481 (877)
Q Consensus 410 li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 481 (877)
+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5556665 666666666666665543 55566666666666 666666666666666654 455566666
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 482 DVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK----NGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553 (877)
Q Consensus 482 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 553 (877)
..|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+..+
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 66665 666677777666666653 45666666666666 677777777777766653 24556666666
Q ss_pred Hhh----cCChhhhHHHHHHHhhhhhhh
Q 002814 554 FGR----SATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 554 ~~~----~g~~~~a~~~~~~~l~~~~~~ 577 (877)
|.+ .++.++|++.++++++..++.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 666 677777777777777666554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=8.1e-12 Score=129.42 Aligned_cols=224 Identities=13% Similarity=0.028 Sum_probs=164.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHchhCCCCCCHHHHH
Q 002814 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK----GAQMDLAFEIMAEMPAKNISPNVVTYS 373 (877)
Q Consensus 298 ~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~ 373 (877)
+..++..+...|...|++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44556666666777777777777777776632 55666667777777 777777777777776654 666777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002814 374 TMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK----LGRFEEALLVCKEMESSGIRKDAVTYNAL 445 (877)
Q Consensus 374 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 445 (877)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777777664 56677777777777 778888888887777754 56667777
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 446 LGGYGK----QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALID 517 (877)
Q Consensus 446 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 517 (877)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777 788888888888877764 56777777788887 788888888888887764 3667777777
Q ss_pred HHHH----cCChHHHHHHHHHHHHCC
Q 002814 518 ALCK----NGLVESAVSLLDEMTKEG 539 (877)
Q Consensus 518 ~~~~----~g~~~~A~~~~~~m~~~g 539 (877)
.|.+ .+++++|++.|++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7877 788888888888887754
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-13 Score=134.00 Aligned_cols=196 Identities=16% Similarity=0.070 Sum_probs=113.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
++.+..+...+.+.|++++|+..|+.++... |.+..++..+..++.+.|++++|+..|+++++..+. +..++..+.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN---PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 4455566667777777777777777777764 455567777777777777777777777777776433 566777777
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 236 SAYGRS-----------GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNS 304 (877)
Q Consensus 236 ~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ 304 (877)
.++.+. |++++|+..|++..+..+. +...|..+..++...| ++++|+..|+++++.. .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLG-ERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcc--cchHHHHH
Confidence 777766 6666666666666553322 3455555555555666 5666666666665554 35555555
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 002814 305 LLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEM 360 (877)
Q Consensus 305 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 360 (877)
+..+|...|++++|+..|+++++.. +.+...+..+...+.+.|++++|++.|++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5566666666666666666655542 224555555555555555555555555543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=7.5e-13 Score=143.19 Aligned_cols=248 Identities=12% Similarity=0.081 Sum_probs=198.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGK-VDLAKNIFETALNEGYGNTVYAFSAL 234 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~l 234 (877)
.+.+..+...+.+.|++++|++.|+.++..+ |.+..+|..+..++.+.|+ +++|+..|++++..... +..+|+.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~---P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 4566777788889999999999999999886 5667889999999999997 99999999999987654 78999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-CC
Q 002814 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR-GG 313 (877)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g 313 (877)
..++.+.|++++|+..|+++.+.... +..+|..+..++.+.| ++++|+..|+++++.... +...|+.+..++.+ .|
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g-~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFK-LWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT-CCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence 99999999999999999999986544 7889999999999999 899999999999987544 77889999999988 66
Q ss_pred CHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcC---
Q 002814 314 LWEAA-----RNLFNEMVHRGIDQDIFTYNTLLDAICKGA--QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAG--- 383 (877)
Q Consensus 314 ~~~~A-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g--- 383 (877)
..++| +..|++.++.. +-+...|+.+..++.+.| ++++|++.+.++ +. ...+...+..+..+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccc
Confidence 65777 47888888764 336778888888888887 588888888887 33 2346777888888888764
Q ss_pred ------CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHH
Q 002814 384 ------RLDDALNMFSEM-KFLGIGLDRVSYNTVLSIY 414 (877)
Q Consensus 384 ------~~~~A~~~~~~m-~~~g~~pd~~~~~~li~~~ 414 (877)
.+++|+++|+++ .+.. +.....|..+...+
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 257888888887 5542 22334455554444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-10 Score=134.18 Aligned_cols=430 Identities=10% Similarity=0.050 Sum_probs=305.5
Q ss_pred hHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCC---hHHHHHHHH
Q 002814 141 SLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGK---VDLAKNIFE 217 (877)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~ 217 (877)
.+..+-+.+...+.+.+.|..++..+.+.+.++.|+.+|++++..- |....+|...+..-.+.|+ ++.+.++|+
T Consensus 51 ~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f---P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 51 VIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF---PLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 3444555566677788999999999999999999999999999884 5566788889998889999 999999999
Q ss_pred HHHHcCC-CCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHHHc---------C
Q 002814 218 TALNEGY-GNTVYAFSALISAYGRSGYC--------QEAISVFNSMKR-YNL-KPN-LVTYNAVIDACGK---------G 276 (877)
Q Consensus 218 ~~~~~g~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~ll~~~~~---------~ 276 (877)
+.+.... .|++..|...+....+.+.. +...++|+.... .|. .++ ...|...+..... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9988641 37888999888776665543 334578887663 566 554 5678877765432 2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHH----------hCCCHHHHHHHHHHHHHc--CCC----------
Q 002814 277 GVDFKHVVEIFDDMLRNGVQPDRITFNS---LLAVCS----------RGGLWEAARNLFNEMVHR--GID---------- 331 (877)
Q Consensus 277 g~~~~~a~~~~~~m~~~g~~p~~~t~~~---ll~~~~----------~~g~~~~A~~~~~~m~~~--g~~---------- 331 (877)
+ +.+.+..+|++++......-..+|.. +...+. ...+++.|...+.++... ++.
T Consensus 208 ~-~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 208 Q-RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp H-HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred h-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 3 46788999999886322211233322 211110 012344455555554321 211
Q ss_pred -----C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHH-H
Q 002814 332 -----Q-----D---IFTYNTLLDAICKGA-------QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDAL-N 390 (877)
Q Consensus 332 -----~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~-~ 390 (877)
| + ...|...+..--..+ ..+.+..+|+++... ++-+...|-..+..+...|+.++|. +
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1 1 245666665443332 123456678887765 3347888888888889999999997 9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------CC------------CHHHHHHHHHHH
Q 002814 391 MFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI---------RK------------DAVTYNALLGGY 449 (877)
Q Consensus 391 ~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~~------------~~~~~~~li~~~ 449 (877)
+|++.... ++.+...|...+....+.|++++|..+|+++++... .| ...+|...+...
T Consensus 366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 99999875 355666778888889999999999999999876310 13 234688888888
Q ss_pred HHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 002814 450 GKQGKYDEVRRMFEQMKAD-CVSPNLLTYSTLIDVYSKG-GLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (877)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 527 (877)
.+.|..+.|..+|.++.+. +. .....|...+..-.+. ++.+.|.++|+..++. +.-+...|...+......|+.+.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHH
Confidence 8899999999999999876 21 1233443333333344 4589999999999886 34477788899998889999999
Q ss_pred HHHHHHHHHHCCCCC--CHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhh
Q 002814 528 AVSLLDEMTKEGIRP--NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (877)
Q Consensus 528 A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (877)
|..+|++.+.....+ ....|...+..-.+.|+.+.+..+..++.+.+|+..
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 999999998763322 235888999988999999999999999999998764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.5e-13 Score=147.39 Aligned_cols=122 Identities=15% Similarity=0.158 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002814 406 SYNTVLSIYAKLG---RFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ----GKYDEVRRMFEQMKADCVSPNLLTYS 478 (877)
Q Consensus 406 ~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~ 478 (877)
.+..|...|.+.| +.++|+..|++..+.| .++...+..|...|... +++++|+..|++.. .| +...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence 4555555555555 5556666666655555 44444444455555433 45666666666655 22 344444
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHH
Q 002814 479 TLIDV-Y--SKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNG-----LVESAVSLLDEMT 536 (877)
Q Consensus 479 ~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~ 536 (877)
.|... | ...+++++|.+.|++..+.| +...+..|...|. .| ++++|++.|++..
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 45544 2 23556666666666666554 4555555555554 33 5666666666555
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-12 Score=130.23 Aligned_cols=203 Identities=14% Similarity=0.030 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYG 450 (877)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 450 (877)
.|..+...|...|++++|++.|+++.+.. +.+...+..+...|...|++++|...++++.+.. +.+..++..+...|.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 34444444444555555555555444432 2234444445555555555555555555544433 234445555555555
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 002814 451 KQGKYDEVRRMFEQMKADCVSP-NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAV 529 (877)
Q Consensus 451 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 529 (877)
..|++++|.++|+++.+.+..| +...+..+...|.+.|++++|.+.|+++.+... .+...+..+...|.+.|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555554421222 234445555555555555555555555554431 23455555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 530 SLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 530 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
..|+++.+.. ..+...+..+...+.+.|+.++|.+.++++++..|+.
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 5555555431 1233445555555555555555555555555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-12 Score=134.60 Aligned_cols=238 Identities=11% Similarity=0.027 Sum_probs=141.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 002814 338 NTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGL--DRVSYNTVLSIYA 415 (877)
Q Consensus 338 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~~~~~li~~~~ 415 (877)
..+...+.+.|++++|++.|++..+.... +...+..+..+|...|++++|++.|++..+....+ ....|..+...|.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33444555555555555555555544221 33345555555566666666666666555522111 1233556666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002814 416 KLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQ 495 (877)
Q Consensus 416 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 495 (877)
..|++++|+..|++..+.. +.+..+|..+...|...|++++|...|++..+. .+.+...|..+...+...+++++|.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666543 345566666777777777777777777766655 23345566666623333447777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHhhcCChhhhHH
Q 002814 496 IFREFKQAGLKADVVLYSALIDALCKNGL---VESAVSLLDEMTKEG-IRPN------VVTYNSIIDAFGRSATTECTVD 565 (877)
Q Consensus 496 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~li~~~~~~g~~~~a~~ 565 (877)
.|+++.+... .+...+..+...+...|+ +++|...|+++.+.. -.|+ ..+|..+...|.+.|++++|+.
T Consensus 164 ~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777766542 245666666777777776 677777777766431 1122 2466677777777888888888
Q ss_pred HHHHHhhhhhhhhh
Q 002814 566 DVERDLGKQKESAN 579 (877)
Q Consensus 566 ~~~~~l~~~~~~~~ 579 (877)
.++++++..|++..
T Consensus 243 ~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 243 AWKNILALDPTNKK 256 (272)
T ss_dssp HHHHHHHHCTTCHH
T ss_pred HHHHHHhcCccHHH
Confidence 88888887776653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-12 Score=132.01 Aligned_cols=236 Identities=14% Similarity=0.062 Sum_probs=149.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGN--TVYAFSA 233 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~ 233 (877)
++.+......+...|++++|+..|+.++... +.+..++..+..++...|++++|.+.|+++++....+ ...+|..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK---YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT---CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 3445556677777888888888888887765 2334466777778888888888888888887733211 2345777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 002814 234 LISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGG 313 (877)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 313 (877)
+...|...|++++|++.|++..+.... +..+|..+...+...| ++++|++.|++.++.. +.+...+..+...+...+
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKG-NFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTT-CHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcc-CHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHH
Confidence 777788888888888888877764332 4567777777777777 7777777777776652 224555666652333445
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHchhCC-CCCC------HHHHHHHHHHHHHcC
Q 002814 314 LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQ---MDLAFEIMAEMPAKN-ISPN------VVTYSTMIDGYAKAG 383 (877)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~pd------~~~~~~li~~~~~~g 383 (877)
++++|.+.|+++++.. +.+...+..+..++...|+ +++|+..|++..+.. -.|+ ..+|..+...|.+.|
T Consensus 157 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 7777777777777653 2245666666666666666 555666665554321 0011 134555555566666
Q ss_pred CHHHHHHHHHHHHHC
Q 002814 384 RLDDALNMFSEMKFL 398 (877)
Q Consensus 384 ~~~~A~~~~~~m~~~ 398 (877)
++++|.+.|++..+.
T Consensus 236 ~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 236 DKVKADAAWKNILAL 250 (272)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 666666666655554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-12 Score=128.52 Aligned_cols=200 Identities=13% Similarity=-0.017 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (877)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 414 (877)
..|..+...|...|++++|++.|+++.+.. +.+...+..+...|...|++++|++.|+++.+.. +.+...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 344455555555555555555555554432 1244555555555666666666666666555442 33455555566666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002814 415 AKLGRFEEALLVCKEMESSGIRK-DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEA 493 (877)
Q Consensus 415 ~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 493 (877)
...|++++|+..++++.+.+..| +...+..+...|.+.|++++|...|+++.+.. +.+...+..+...|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666665521122 34555566666666666666666666665542 22456666666666666677777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002814 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (877)
Q Consensus 494 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (877)
...|+++.+.. +.+...+..+...+.+.|+.++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 76666666543 235556666666666777777777777776653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=6.6e-13 Score=137.57 Aligned_cols=250 Identities=14% Similarity=0.064 Sum_probs=173.4
Q ss_pred HccCCHHHHHHHHHHHHHcccc-CCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 002814 167 GNRGEWSKAIQCFAFAVKREER-KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQ 245 (877)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 245 (877)
...|++++|++.|+.++..... .+.+..++..++.++...|++++|...|+++++.... +..+|..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 3467889999999998876321 1235667888899999999999999999999887543 6888899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002814 246 EAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEM 325 (877)
Q Consensus 246 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m 325 (877)
+|+..|+++.+.... +..+|..+...+...| ++++|...|+++++. .|+......++..+...|++++|...+++.
T Consensus 95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGG-RDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhc-cHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999998875432 5778888888888888 899999999988875 344444444555556678888888888777
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002814 326 VHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISP---NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGL 402 (877)
Q Consensus 326 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 402 (877)
.... +++...+. ++..+...++.++|++.+++........ +..+|..+...|.+.|++++|...|+++.... |
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 7653 23333333 6666777777788888887776542110 13556666777777777777777777766552 3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 403 DRVSYNTVLSIYAKLGRFEEALLVC 427 (877)
Q Consensus 403 d~~~~~~li~~~~~~g~~~~A~~~~ 427 (877)
+. +.....++...|++++|++.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 21 122234455556666665554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.7e-12 Score=124.50 Aligned_cols=201 Identities=10% Similarity=-0.023 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 334 IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSI 413 (877)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~ 413 (877)
...+..+...+...|++++|++.|+++.+... .+...+..+...|...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 44555555556666666666666655554321 244555555555555555555555555555442 2344455555555
Q ss_pred HHHc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002814 414 YAKL-GRFEEALLVCKEMESSGIRK-DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYK 491 (877)
Q Consensus 414 ~~~~-g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 491 (877)
|... |++++|...++++.+.+..| +...+..+...|.+.|++++|...|+++.+.. +.+...+..+...|.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 5555 55555555555555421111 23445555555555555555555555554431 223445555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 492 EAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 492 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
+|..+|+++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555555554432212444444444444555555555555555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.4e-13 Score=137.17 Aligned_cols=218 Identities=14% Similarity=-0.002 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 279 DFKHVVEIFDDMLRNGVQ---PDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFE 355 (877)
Q Consensus 279 ~~~~a~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 355 (877)
++++|++.|+++++.... .+..++..+...+...|++++|...|+++++.. +.+..+|..+...|...|++++|++
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 555666666665554211 123445555556666666666666666665543 2245555666666666666666666
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 002814 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI 435 (877)
Q Consensus 356 ~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 435 (877)
.|+++.+... .+...+..+...|.+.|++++|++.|+++.+. .|+.......+..+...|++++|...+++.....
T Consensus 99 ~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 99 AFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 6665554321 14455555666666666666666666665554 2333333333333444556666666665544432
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 436 RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS---PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 436 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
+++...+. ++..+...++.++|...+.++.+.... .+..+|..+...|.+.|++++|...|+++.+
T Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 175 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22322332 444455555555555555555432100 0023344444444444444444444444444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.9e-12 Score=124.09 Aligned_cols=200 Identities=10% Similarity=-0.034 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHH
Q 002814 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGY 379 (877)
Q Consensus 300 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 379 (877)
..+..+...+...|++++|.+.|+++.+.. +.+...+..+...|...|++++|++.|+++.+... .+..++..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 445555555555666666666665555542 22355555555555566666666666655554321 2445555555555
Q ss_pred HHc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 002814 380 AKA-GRLDDALNMFSEMKFLGIGLD-RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE 457 (877)
Q Consensus 380 ~~~-g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 457 (877)
... |++++|+..++++.+.+..|+ ...+..+...+...|++++|+..++++.+.. +.+...+..+...|.+.|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 555 666666666655554211222 3445555555555666666666665555443 3345555555555556666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 458 VRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 458 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
|...|+++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666665555432113445555555555555666666555555544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-12 Score=130.03 Aligned_cols=199 Identities=12% Similarity=0.086 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 334 IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSI 413 (877)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~ 413 (877)
...|..+...+.+.|++++|+.+|+++.+... .+...+..+...|.+.|++++|++.|+++.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 33444455555555555555555555554322 245555555555555666666666665555442 3345555555566
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002814 414 YAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEA 493 (877)
Q Consensus 414 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 493 (877)
|...|++++|+..++++.+.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...|.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666655543 3445555566666666666666666666655542 22455566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 494 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
...|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 66666665543 22455666666666666666666666666655
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-12 Score=129.35 Aligned_cols=207 Identities=15% Similarity=0.146 Sum_probs=166.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (877)
Q Consensus 368 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 447 (877)
....|..+...+...|++++|..+|+++.+.. +.+...+..+...|...|++++|+..++++.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 45677888889999999999999999998864 5578889999999999999999999999998775 567899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 002814 448 GYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (877)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 527 (877)
.|...|++++|.+.|+++.+.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998863 4478889999999999999999999999998865 3478899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhh
Q 002814 528 AVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESAN 579 (877)
Q Consensus 528 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~ 579 (877)
|+..|+++.+.. ..+..++..+..+|.+.|++++|+..++++++..|+...
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 999999998753 335778999999999999999999999999999887653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.8e-10 Score=128.64 Aligned_cols=375 Identities=10% Similarity=0.030 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHH
Q 002814 173 SKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGY---CQEAIS 249 (877)
Q Consensus 173 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~ 249 (877)
.+.+..|+..+..+ +.+...|..++..+.+.+.++.++.+|++++.. ++.....|...+..-.+.|. ++.+..
T Consensus 49 ~d~i~~lE~~l~~n---p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ---PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp SCHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred HHHHHHHHHHHHHC---cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 34456677777775 567789999999999999999999999999987 45578899999999889999 999999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHcCCCCH--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHHh------
Q 002814 250 VFNSMKRYN-LKPNLVTYNAVIDACGKGGVDF--------KHVVEIFDDMLR-NGV-QPD-RITFNSLLAVCSR------ 311 (877)
Q Consensus 250 ~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~--------~~a~~~~~~m~~-~g~-~p~-~~t~~~ll~~~~~------ 311 (877)
+|++..... ..|++..|...+.-..+.+ +. +.+.++|+.++. .|. .++ ...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~-~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKN-DIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHS-CSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhc-ccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 999998753 1378888888877655433 32 345578887764 465 554 4567777665432
Q ss_pred ---CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 312 ---GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDA 388 (877)
Q Consensus 312 ---~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 388 (877)
.++++.+.++|++++......-..+|......--..+. ..+.+++.+. ..+++.|
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~A 261 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNA 261 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHH
Confidence 34577888999888863211112333322221111111 0111111110 1122223
Q ss_pred HHHHHHHHHC--CCC---------------C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCC
Q 002814 389 LNMFSEMKFL--GIG---------------L-----D---RVSYNTVLSIYAKLG-------RFEEALLVCKEMESSGIR 436 (877)
Q Consensus 389 ~~~~~~m~~~--g~~---------------p-----d---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~ 436 (877)
...+.++... ++. | + ...|...+..--..+ ..+....+|++.+..- +
T Consensus 262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p 340 (679)
T 4e6h_A 262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-C 340 (679)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-C
Confidence 3333332110 100 0 0 122333333222211 1233455666666542 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------C
Q 002814 437 KDAVTYNALLGGYGKQGKYDEVR-RMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL---------K 506 (877)
Q Consensus 437 ~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~ 506 (877)
-+...|...+..+.+.|+.++|. ++|++.... ++.+...|-..+....+.|++++|.++|+++++... .
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 56777777777777777777775 777777654 344566666677777777777777777777765310 1
Q ss_pred CC------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhhc-CChhhhHHHHHHHhh
Q 002814 507 AD------------VVLYSALIDALCKNGLVESAVSLLDEMTKE-GIRPNVVTYNSIIDAFGRS-ATTECTVDDVERDLG 572 (877)
Q Consensus 507 p~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~l~ 572 (877)
|+ ...|...+....+.|..+.|..+|.++++. +. .....|...+..-.+. ++.+.|..+++++++
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 21 235666666666777777777777777764 21 1222333222222222 336666666666666
Q ss_pred hhhhh
Q 002814 573 KQKES 577 (877)
Q Consensus 573 ~~~~~ 577 (877)
.++..
T Consensus 499 ~~p~~ 503 (679)
T 4e6h_A 499 YFATD 503 (679)
T ss_dssp HHTTC
T ss_pred HCCCc
Confidence 55543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-12 Score=141.04 Aligned_cols=304 Identities=14% Similarity=0.133 Sum_probs=178.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC----CCCC-
Q 002814 227 TVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN----LVTYNAVIDACGKGGVDFKHVVEIFDDMLRN----GVQP- 297 (877)
Q Consensus 227 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~----g~~p- 297 (877)
....+..+...+...|++++|+..|+++.+.+.. + ..+|..+...+...| ++++|...+++++.. +-.+
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLH-DYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhccccHH
Confidence 4445555566666666666666666666553221 2 234555555555566 666666666555431 1000
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHH
Q 002814 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGID-QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376 (877)
Q Consensus 298 ~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li 376 (877)
...++..+...|...|++++|...+++..+.... .+ ......++..+.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------------------~~~~~~~~~~l~ 134 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-------------------------------KVGEARALYNLG 134 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-------------------------------ccchHHHHHHHH
Confidence 1223444444445555555555555444442100 00 000123455556
Q ss_pred HHHHHcCC--------------------HHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 377 DGYAKAGR--------------------LDDALNMFSEMKFL----GIG-LDRVSYNTVLSIYAKLGRFEEALLVCKEME 431 (877)
Q Consensus 377 ~~~~~~g~--------------------~~~A~~~~~~m~~~----g~~-pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (877)
..|...|+ +++|++.+++.... +.. ....++..+...|...|++++|...+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66666666 66666666654321 101 112456677777777888888888777765
Q ss_pred HCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002814 432 SSGI-RKD----AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS-PN----LLTYSTLIDVYSKGGLYKEAMQIFREFK 501 (877)
Q Consensus 432 ~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~ 501 (877)
+..- .++ ..++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...|++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4210 111 336777788888888888888888877643100 11 4577788888889999999999888876
Q ss_pred HCCCC-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhhcCChhhh
Q 002814 502 QAGLK-AD----VVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN-VVTYNSIIDAFGRSATTECT 563 (877)
Q Consensus 502 ~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a 563 (877)
+.... .+ ..++..+...|.+.|++++|...|++..+. +..+. ..++..+...+...|+....
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 53111 12 557788888999999999999999987643 22222 33677777788777776543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.2e-12 Score=138.89 Aligned_cols=270 Identities=14% Similarity=0.078 Sum_probs=158.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHchhC----C-CCCCHHHHHHHH
Q 002814 306 LAVCSRGGLWEAARNLFNEMVHRGIDQDI----FTYNTLLDAICKGAQMDLAFEIMAEMPAK----N-ISPNVVTYSTMI 376 (877)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~pd~~~~~~li 376 (877)
...+...|++++|+..|+++++.+.. +. .+|..+...|...|++++|++.|++..+. + ......++..+.
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 33444444445555444444443211 11 23444444444555555555544443321 0 011223445555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHC-
Q 002814 377 DGYAKAGRLDDALNMFSEMKFL----G-IGLDRVSYNTVLSIYAKLGR-----------------FEEALLVCKEMESS- 433 (877)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~----g-~~pd~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~- 433 (877)
..|...|++++|+..|++..+. + ......++..+...|...|+ +++|+..+++..+.
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554332 1 01122345556666666666 66666666654331
Q ss_pred ---CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002814 434 ---GI-RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCV-SPN----LLTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504 (877)
Q Consensus 434 ---g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 504 (877)
+. .....++..+...|...|++++|...|++..+... ..+ ..++..+...|...|++++|...|++..+..
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 10 11234666777778888888888888877765310 011 2367778888888889988888888776531
Q ss_pred CC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhhcCChhhhHHHHHHHhhhh
Q 002814 505 LK-----ADVVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN-VVTYNSIIDAFGRSATTECTVDDVERDLGKQ 574 (877)
Q Consensus 505 ~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~ 574 (877)
.. ....++..+...|...|++++|...|++..+. +..+. ..++..+..+|.+.|++++|+..+++++...
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 10 11467778888899999999999999888753 11111 3377788888999999999999998888875
Q ss_pred hh
Q 002814 575 KE 576 (877)
Q Consensus 575 ~~ 576 (877)
.+
T Consensus 374 ~~ 375 (411)
T 4a1s_A 374 XX 375 (411)
T ss_dssp CH
T ss_pred hh
Confidence 54
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-12 Score=141.60 Aligned_cols=304 Identities=17% Similarity=0.107 Sum_probs=195.3
Q ss_pred ChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-C
Q 002814 191 DQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT---VYAFSALISAYGRSGYCQEAISVFNSMKRY----NLKP-N 262 (877)
Q Consensus 191 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~ 262 (877)
.....+......+...|++++|...|+++++...... ..++..+...|...|++++|+..|++.... +-.| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445667788899999999999999999998754321 467888999999999999999999987542 2112 2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhCCC--------------------HHH
Q 002814 263 LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ-PD----RITFNSLLAVCSRGGL--------------------WEA 317 (877)
Q Consensus 263 ~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~--------------------~~~ 317 (877)
..++..+...+...| ++++|+..+++++..... .+ ..++..+...|...|+ +++
T Consensus 87 ~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVLG-NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 457788888899999 999999999998753110 12 3356667777777777 666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 318 ARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKF 397 (877)
Q Consensus 318 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (877)
|...+++..+. +..... ......++..+...|...|++++|+..+++..+
T Consensus 166 A~~~~~~al~~----------------------------~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 166 AVDFYEENLSL----------------------------VTALGD--RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHHHHH----------------------------HHHTTC--HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------------------------HHhccC--cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66666554432 111100 000123445555555555566555555555443
Q ss_pred CCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 398 LGI-GLD----RVSYNTVLSIYAKLGRFEEALLVCKEMESSGI-RKD----AVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (877)
Q Consensus 398 ~g~-~pd----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (877)
... .++ ..++..+...|...|++++|...+++..+... ..+ ..++..+...|.+.|++++|...|++..+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 200 011 23566666677777777777777766543210 011 45667777888888888888888887764
Q ss_pred CCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCh
Q 002814 468 DCV-SPN----LLTYSTLIDVYSKGGLYKEAMQIFREFKQA----GL-KADVVLYSALIDALCKNGLV 525 (877)
Q Consensus 468 ~g~-~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~ 525 (877)
... ..+ ..++..+...|...|++++|.+.|++..+. +. .....++..+...+...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 310 011 456778888888899999999888887642 11 11234556666666666655
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.40 E-value=6e-12 Score=139.02 Aligned_cols=98 Identities=14% Similarity=0.060 Sum_probs=59.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHccccCCC-hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCCHHHHH
Q 002814 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKND-QGKLASAMISILGRLGKVDLAKNIFETALNE----G-YGNTVYAFS 232 (877)
Q Consensus 159 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g-~~~~~~~~~ 232 (877)
+..+...+...|++++|+..|+.++......+. ...++..+..+|...|++++|...|++++.. + ......++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 444666677777777777777777776421100 0135666777777777777777777776542 1 011234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 002814 233 ALISAYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~ 256 (877)
.+...|...|++++|+..|++..+
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~ 154 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLT 154 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666666666543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-10 Score=120.69 Aligned_cols=189 Identities=13% Similarity=0.074 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 002814 386 DDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAV-TYNALLGGYGKQGKYDEVRRMFEQ 464 (877)
Q Consensus 386 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 464 (877)
++|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5666666666552112234456666666666666666666666666532 12232 566666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCC
Q 002814 465 MKADCVSPNLLTYSTLIDVYS-KGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG-IRP 542 (877)
Q Consensus 465 m~~~g~~p~~~t~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 542 (877)
.++.. +.+...|...+.... ..|++++|..+|++.++... -+...|..++..+.+.|++++|..+|++.++.. +.|
T Consensus 160 a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 66542 223334433333222 25677777777776665432 256666667777777777777777777776642 343
Q ss_pred --CHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 543 --NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 543 --~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
....|..++..+.+.|+.++|..++.++++.+|++
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 34566666666677777777777777777766654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-11 Score=130.58 Aligned_cols=205 Identities=14% Similarity=0.062 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHH
Q 002814 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLGI-GLD----RVSYNTVLSIYAKLGR--------------------FEEALL 425 (877)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~~~~~li~~~~~~g~--------------------~~~A~~ 425 (877)
++..+...|...|++++|.+.+++..+... ..+ ..++..+...|...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 344455555555555555555554432200 011 2244555555555566 666666
Q ss_pred HHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 002814 426 VCKEMESS----GI-RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCV-SPN----LLTYSTLIDVYSKGGLYKEAMQ 495 (877)
Q Consensus 426 ~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~ 495 (877)
.+++..+. +. .....++..+...|...|++++|...+++..+... ..+ ..++..+...|...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55554321 10 11134566667777777787777777777654210 011 2366777778888888888888
Q ss_pred HHHHHHHCCCC-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhhcCChhhhHH
Q 002814 496 IFREFKQAGLK-AD----VVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN-VVTYNSIIDAFGRSATTECTVD 565 (877)
Q Consensus 496 ~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~ 565 (877)
.+++..+.... .+ ..++..+...|...|++++|...++++.+. +-.+. ..++..+...|.+.|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88777642110 11 456777788888888888888888887643 11111 3367778888888888888888
Q ss_pred HHHHHhhhhh
Q 002814 566 DVERDLGKQK 575 (877)
Q Consensus 566 ~~~~~l~~~~ 575 (877)
.+++++....
T Consensus 325 ~~~~a~~~~~ 334 (338)
T 3ro2_A 325 FAEKHLEISR 334 (338)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 8888877544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.4e-10 Score=117.84 Aligned_cols=218 Identities=10% Similarity=0.058 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHccccCCChHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002814 173 SKAIQCFAFAVKREERKNDQGKLASAMISILG-------RLGKV-------DLAKNIFETALNEGYGNTVYAFSALISAY 238 (877)
Q Consensus 173 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 238 (877)
++|+.+|++++... |.+..+|..++..+. +.|++ ++|+.+|+++++.-.+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~---p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 68888999998875 455667777777765 35776 88999999988731223677888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hCCCH
Q 002814 239 GRSGYCQEAISVFNSMKRYNLKPN-LV-TYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCS-RGGLW 315 (877)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~ 315 (877)
.+.|++++|..+|+++.+. .|+ .. .|..+...+.+.| ++++|..+|+++++... .+...|...+.... ..|++
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAE-GIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHH-CHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCH
Confidence 8899999999999988874 343 33 7888888888888 88888888888887643 23444443333322 36888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 316 EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN-ISP--NVVTYSTMIDGYAKAGRLDDALNMF 392 (877)
Q Consensus 316 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--d~~~~~~li~~~~~~g~~~~A~~~~ 392 (877)
++|..+|++.++.. +.+...|..++..+.+.|++++|+.+|++..... +.| ....|..++..+.+.|+.++|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888887753 3367778888888888888888888888877752 333 4567777777777788888888888
Q ss_pred HHHHHC
Q 002814 393 SEMKFL 398 (877)
Q Consensus 393 ~~m~~~ 398 (877)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-11 Score=130.14 Aligned_cols=94 Identities=17% Similarity=0.072 Sum_probs=43.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHccccCCC-hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHHHHHHH
Q 002814 161 FLLRELGNRGEWSKAIQCFAFAVKREERKND-QGKLASAMISILGRLGKVDLAKNIFETALNE----GYG-NTVYAFSAL 234 (877)
Q Consensus 161 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~~~~l 234 (877)
.....+...|++++|+..|+.++......+. ...++..+...+...|++++|.+.++++... +.. ....++..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 3445555566666666666666554311000 0234455555555555555555555554332 000 013344444
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 002814 235 ISAYGRSGYCQEAISVFNSM 254 (877)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m 254 (877)
...|...|++++|+..|++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~a 109 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRH 109 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHH
Confidence 44444445555554444444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-10 Score=111.19 Aligned_cols=163 Identities=15% Similarity=0.106 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 370 VTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY 449 (877)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 449 (877)
..|..+...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|+..+....... +.+...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 334444444444444444444444433332 2233333444444444444444444444433322 22333333333444
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 002814 450 GKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAV 529 (877)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 529 (877)
...++++.|...+.+..+.. +.+...+..+..+|.+.|++++|++.|++..+... .+...|..+..+|.+.|++++|+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHHH
Confidence 44444444444444433321 11233333444444444444444444444433321 13333444444444444444444
Q ss_pred HHHHHHH
Q 002814 530 SLLDEMT 536 (877)
Q Consensus 530 ~~~~~m~ 536 (877)
+.|++.+
T Consensus 162 ~~~~~al 168 (184)
T 3vtx_A 162 KYFKKAL 168 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-10 Score=111.96 Aligned_cols=172 Identities=14% Similarity=0.069 Sum_probs=154.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 403 DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLID 482 (877)
Q Consensus 403 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 482 (877)
+...|..+...|.+.|++++|+..|++.++.. +.+..++..+...|.+.|++++|...+.+..... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 67789999999999999999999999999876 6689999999999999999999999999998763 446788888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhh
Q 002814 483 VYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTEC 562 (877)
Q Consensus 483 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 562 (877)
.+...++++.|.+.+.+..+... -+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 99999999999999999988653 478899999999999999999999999999853 2356789999999999999999
Q ss_pred hHHHHHHHhhhhhhhh
Q 002814 563 TVDDVERDLGKQKESA 578 (877)
Q Consensus 563 a~~~~~~~l~~~~~~~ 578 (877)
|+..++++++.+|++.
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999988764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.8e-12 Score=131.91 Aligned_cols=243 Identities=16% Similarity=0.106 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-
Q 002814 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKAD-------CVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQA------G- 504 (877)
Q Consensus 439 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------g- 504 (877)
..++..+...|...|++++|..+|+++.+. .......++..+...|...|++++|...|+++.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445555566666666666666666665542 11223445566666666666666666666666542 1
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 505 LKADVVLYSALIDALCKNGLVESAVSLLDEMTKE------GIRPN-VVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 505 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
.......+..+...|...|++++|+..|+++.+. +-.|+ ..++..+...+...|++++|+..+++++..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---- 182 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI---- 182 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----
Confidence 1123456677777788888888888888877653 22232 336777777888888888777665554432
Q ss_pred hhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 002814 578 ANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACS 656 (877)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~ 656 (877)
+++... +..| ...++..+..+|.
T Consensus 183 -------------------------------------------------------~~~~~~-~~~~~~~~~~~~la~~~~ 206 (311)
T 3nf1_A 183 -------------------------------------------------------YQTKLG-PDDPNVAKTKNNLASCYL 206 (311)
T ss_dssp -------------------------------------------------------HHHTSC-TTCHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------HHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 221100 1122 2345777888888
Q ss_pred cCCCHHHHHHHHHHHHhcCCc---------chhHHHHH--hh----cc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHH
Q 002814 657 RCNSFEDASMLLEELRLFDNQ---------VYGVAHGL--LM----GY-RDNIWVQALSLFDEVKLMDSSTASAFYNALT 720 (877)
Q Consensus 657 ~~g~~~eA~~~~~~~~~~~~~---------~~~~~~~l--~~----~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 720 (877)
..|++++|.++|+++....+. ........ +. .+ ..+.+.+|...++++....+ ....+|..++
T Consensus 207 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~la 285 (311)
T 3nf1_A 207 KQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP-TVTTTLKNLG 285 (311)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CH-HHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc-hHHHHHHHHH
Confidence 889999999988887753221 11111111 00 00 23455567777777776666 6788899999
Q ss_pred HHHHhcCchhhHHHHHHHhhhh
Q 002814 721 DMLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 721 ~~~~~~g~~~~A~~~~~~~~~~ 742 (877)
.+|.+.|++++|..++.++.+.
T Consensus 286 ~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 286 ALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-10 Score=131.14 Aligned_cols=225 Identities=11% Similarity=-0.020 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 280 FKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW-EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMA 358 (877)
Q Consensus 280 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (877)
++++++.+++..... ..+...+..+...+...|++ ++|++.|++.++.. +.+...|..+..+|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555544332 22555566666666666666 66666666666543 2235555555555555555555555555
Q ss_pred HchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 002814 359 EMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD 438 (877)
Q Consensus 359 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 438 (877)
+..+.. |+...+..+...|...+.- ....+.|++++|+..|++..+.. +.+
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~--------------------------~~~~~~g~~~~A~~~~~~al~~~-p~~ 212 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTD--------------------------SGDEHSRHVMDSVRQAKLAVQMD-VLD 212 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCS--------------------------CHHHHHHHHHHHHHHHHHHHHHC-TTC
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccC--------------------------ChhhhhhhHHHHHHHHHHHHHhC-CCC
Confidence 555442 3444444455555444000 00000044455555555444433 334
Q ss_pred HHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002814 439 AVTYNALLGGYGKQ--------GKYDEVRRMFEQMKADCVS--PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD 508 (877)
Q Consensus 439 ~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~--p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 508 (877)
...|..+..+|... |++++|+..|++.++.... -+...|..+..+|...|++++|.+.|++..+... -+
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~ 291 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AW 291 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CC
Confidence 45555555555555 5666666666666654110 2566666677777777777777777777666542 25
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 509 VVLYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
...+..+..++...|++++|++.+.++.
T Consensus 292 ~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 292 PEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5566777777777777777777666553
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.2e-11 Score=133.71 Aligned_cols=217 Identities=13% Similarity=0.001 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002814 172 WSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKV-DLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISV 250 (877)
Q Consensus 172 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 250 (877)
+++|++.++...... +....++..+..++...|++ ++|++.|+++++.... +..+|..+...|.+.|++++|++.
T Consensus 84 ~~~al~~l~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA---QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTTC---CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccC---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555555444332 33445555566666666666 6666666666554322 455666666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC--------C
Q 002814 251 FNSMKRYNLKPNLVTYNAVIDACGKG---------GVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG--------G 313 (877)
Q Consensus 251 ~~~m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--------g 313 (877)
|++..+. .|+..++..+...+... | ++++|++.|+++++.... +...|..+..+|... |
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSR-HVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHH-HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhh-hHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccc
Confidence 6666553 24445555555555555 5 555555555555543221 344444444444444 4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 314 LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFS 393 (877)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 393 (877)
++++|+..|++.++.. |. ..-+...|..+..+|...|++++|++.|+
T Consensus 236 ~~~~A~~~~~~al~~~--p~-------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 282 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD--RK-------------------------------ASSNPDLHLNRATLHKYEESYGEALEGFS 282 (474)
T ss_dssp HHHHHHHHHHHHHHHC--GG-------------------------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC--CC-------------------------------cccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444444432 10 00144455555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 394 EMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (877)
Q Consensus 394 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 430 (877)
+..+.. +-+...+..+..++...|++++|+..+.++
T Consensus 283 ~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 283 QAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 554442 223444555555555555555555544433
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.2e-11 Score=130.85 Aligned_cols=162 Identities=10% Similarity=0.017 Sum_probs=76.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcC--CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC--C----CCCHHHHH
Q 002814 305 LLAVCSRGGLWEAARNLFNEMVHRG--IDQ---DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN--I----SPNVVTYS 373 (877)
Q Consensus 305 ll~~~~~~g~~~~A~~~~~~m~~~g--~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~pd~~~~~ 373 (877)
....+...|++++|...|++..+.- ... ...++..+...|...|++++|++.+++..+.. . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3445556666666666666665430 010 13455556666666666666666655543210 0 00123455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 002814 374 TMIDGYAKAGRLDDALNMFSEMKFLGI-GLD----RVSYNTVLSIYAKLGRFEEALLVCKEMESS----GI-RKDAVTYN 443 (877)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~ 443 (877)
.+...|...|++++|++.|++..+..- ..+ ..++..+...|...|++++|+..|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 555555566666666655555442200 011 123444555555555555555555544431 11 12233444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 002814 444 ALLGGYGKQGKYDEVRRMFEQMK 466 (877)
Q Consensus 444 ~li~~~~~~g~~~~A~~~~~~m~ 466 (877)
.+...|.+.|++++|...+++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44445555555555555554443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.4e-10 Score=124.85 Aligned_cols=228 Identities=10% Similarity=-0.089 Sum_probs=109.8
Q ss_pred HccCCHHHHHHHHHHHHHccccC--CChHHHHHHHHHH--HHhcCChHHHH-----------HHHHHHHHcCCCCC----
Q 002814 167 GNRGEWSKAIQCFAFAVKREERK--NDQGKLASAMISI--LGRLGKVDLAK-----------NIFETALNEGYGNT---- 227 (877)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~g~~~~---- 227 (877)
.+.+++++|..+++.+...-... ..+...|..++.. ..-.++++.+. ++++.+.......+
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 45788999999998876643221 2222222333221 11223333333 55555433210000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC-C----
Q 002814 228 VYAFSALISAYGRSGYCQEAISVFNSMKRYNL-KP----NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ-P---- 297 (877)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p----~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~-p---- 297 (877)
...+......+...|++++|+..|++..+.-. .+ ...+|..+...+...| ++++|+..+++.++.-.. +
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK-QTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCccchH
Confidence 11222245556677777777777777654200 11 2345666666666666 677777776666542100 0
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHchh-----CCCC
Q 002814 298 -DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGID-QD----IFTYNTLLDAICKGAQMDLAFEIMAEMPA-----KNIS 366 (877)
Q Consensus 298 -~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~ 366 (877)
...+++.+...|...|++++|...|++.++.... .+ ..++..+..+|...|++++|++.|++..+ ....
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1234555556666666666666666655432100 01 12444455555555555555555554443 1101
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 367 PNVVTYSTMIDGYAKAGRLDDALNMFSEM 395 (877)
Q Consensus 367 pd~~~~~~li~~~~~~g~~~~A~~~~~~m 395 (877)
....++..+...|.+.|++++|.+.+++.
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 12333444444444444444444444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-11 Score=128.04 Aligned_cols=133 Identities=17% Similarity=0.228 Sum_probs=73.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccc-----cCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-C
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREE-----RKNDQGKLASAMISILGRLGKVDLAKNIFETALNE------GY-G 225 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~-~ 225 (877)
.+..+...+...|++++|+.+|+.++.... ..+....++..+..+|...|++++|...|++++.. +. .
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 455567777777777777777777766310 12334455666677777777777777777766543 11 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 002814 226 NTVYAFSALISAYGRSGYCQEAISVFNSMKRY------NLKP-NLVTYNAVIDACGKGGVDFKHVVEIFDDML 291 (877)
Q Consensus 226 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~ 291 (877)
....++..+...|...|++++|+..|+++.+. +-.| ...++..+...+...| ++++|+++|++++
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG-KYEEVEYYYQRAL 180 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 12445556666666666666666666665532 1111 1233444444444444 4444444444444
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=6e-09 Score=113.12 Aligned_cols=269 Identities=10% Similarity=-0.016 Sum_probs=159.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCC--hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKND--QGKLASAMISILGRLGKVDLAKNIFETALNEGYG-NT----VYAFSAL 234 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~~l 234 (877)
....+...|++++|+..++.++........ ...++..+...+...|++++|.+.++++...... .+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 444566789999999999988876421111 1124566777888889999999998887653110 11 2345667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC----CCHHHHH
Q 002814 235 ISAYGRSGYCQEAISVFNSMKRY----NLK--P-NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ----PDRITFN 303 (877)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~----p~~~t~~ 303 (877)
...+...|++++|+..+++..+. +.. | ...++..+...+...| ++++|...+++.+..... ....++.
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-RLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 77888888888888888877542 211 2 2345566667777788 888888888887753221 1234566
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCC-C-HHHHH----HHHHHHHHcCCHHHHHHHHHHchhCCCCC---CHHHHHH
Q 002814 304 SLLAVCSRGGLWEAARNLFNEMVHRGIDQ-D-IFTYN----TLLDAICKGAQMDLAFEIMAEMPAKNISP---NVVTYST 374 (877)
Q Consensus 304 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~-~-~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~~~~~ 374 (877)
.+...+...|++++|...+++.....-.+ + ..... .++..+...|++++|...+++........ ....+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 67777778888888888887776531111 1 11111 23344667777888877777766543211 1224455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 375 MIDGYAKAGRLDDALNMFSEMKFL----GIGLDR-VSYNTVLSIYAKLGRFEEALLVCKEME 431 (877)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~----g~~pd~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (877)
+...+...|++++|...+++.... |...+. ..+..+..++...|+.++|...+++..
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 566666667777766666655432 111111 133333444445555555555544443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.5e-09 Score=114.12 Aligned_cols=269 Identities=10% Similarity=0.011 Sum_probs=145.4
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHchhCCC-CCC----HHHHHHHHHH
Q 002814 308 VCSRGGLWEAARNLFNEMVHRGIDQDI----FTYNTLLDAICKGAQMDLAFEIMAEMPAKNI-SPN----VVTYSTMIDG 378 (877)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~~~~~li~~ 378 (877)
.+...|++++|...+++..+.....+. .+++.+...+...|++++|.+.+++...... ..+ ..++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344455555555555555443211111 1334444555555555555555555432100 001 1224445555
Q ss_pred HHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHH
Q 002814 379 YAKAGRLDDALNMFSEMKFL----GIG--L-DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIR----KDAVTYNALLG 447 (877)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~----g~~--p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~li~ 447 (877)
|...|++++|...+++.... +.. | ....+..+...+...|++++|...+++..+..-. ....++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 66666666666666655432 111 1 1234455566666677777777777665543211 12345666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-C-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHH
Q 002814 448 GYGKQGKYDEVRRMFEQMKADCVSP-N-LLTYS----TLIDVYSKGGLYKEAMQIFREFKQAGLKA---DVVLYSALIDA 518 (877)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~g~~p-~-~~t~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~ 518 (877)
.+...|++++|...+++.......+ + ..... ..+..+...|++++|...+++..+..... ....+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 6777777777777777665421111 1 11111 22334667777777777777665432111 12345666777
Q ss_pred HHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhhcCChhhhHHHHHHHhhhhhh
Q 002814 519 LCKNGLVESAVSLLDEMTKE----GIRPNV-VTYNSIIDAFGRSATTECTVDDVERDLGKQKE 576 (877)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (877)
+...|++++|...+++.... |..++. .++..+..++...|+.++|...+++++.....
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 77888888888888777542 222222 25556667778888888888888887776543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-09 Score=102.39 Aligned_cols=163 Identities=12% Similarity=0.082 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (877)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 414 (877)
..+..+...+...|++++|++.|+++.+... .+...+..+...|...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3455555666666666666666666655422 245555566666666666666666666655442 33444555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002814 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAM 494 (877)
Q Consensus 415 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 494 (877)
...|++++|...++++.+.. +.+...+..+...|.+.|++++|...|+++.+.. +.+...+..+...|...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555554433 3344444555555555555555555555544431 223344444444444444444444
Q ss_pred HHHHHHH
Q 002814 495 QIFREFK 501 (877)
Q Consensus 495 ~~~~~m~ 501 (877)
+.++++.
T Consensus 165 ~~~~~~~ 171 (186)
T 3as5_A 165 PHFKKAN 171 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-09 Score=102.78 Aligned_cols=168 Identities=17% Similarity=0.119 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 406 SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYS 485 (877)
Q Consensus 406 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 485 (877)
.+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...++++.+.. +.+...+..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444555555556666655555554433 3345555556666666666666666666655542 234555666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHH
Q 002814 486 KGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVD 565 (877)
Q Consensus 486 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 565 (877)
..|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+++.+.. ..+..++..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665543 2355666666666666677777777776666542 2244566666667777777777777
Q ss_pred HHHHHhhhhhhh
Q 002814 566 DVERDLGKQKES 577 (877)
Q Consensus 566 ~~~~~l~~~~~~ 577 (877)
.++++++..++.
T Consensus 166 ~~~~~~~~~~~~ 177 (186)
T 3as5_A 166 HFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHcCCCc
Confidence 777776666554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=8.6e-10 Score=128.84 Aligned_cols=165 Identities=14% Similarity=0.124 Sum_probs=104.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
++.+..+...+.+.|++++|++.|+++++.. +.+..++..+..+|.+.|++++|++.|+++++.... +..+|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~---P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 4455666666666777777777777766664 344556666666777777777777777766665432 466666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 315 (877)
.+|.+.|++++|++.|++..+.... +..+|+.+..++.+.| ++++|++.|++.++.... +...+..|..++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g-~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSG-NIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 6666667777777776666654322 4556666666666666 666666666666654322 455566666666666666
Q ss_pred HHHHHHHHHHHH
Q 002814 316 EAARNLFNEMVH 327 (877)
Q Consensus 316 ~~A~~~~~~m~~ 327 (877)
++|.+.++++++
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-09 Score=114.96 Aligned_cols=128 Identities=13% Similarity=0.113 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHH
Q 002814 371 TYSTMIDGYAKAGRLDDALNMFSEMKF-----LGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG----IRKDAVT 441 (877)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~~~~ 441 (877)
++..+..+|...|++++|++.|++..+ .. +....++..+...|.+.|++++|...+++..+.. -+.....
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444455555555555555555555443 21 2224455555556666666666666665554421 1112333
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 442 YNALLGGYGKQGK---YDEVRRMFEQMKADCVSP-NLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 442 ~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
+..+...|...|+ +.+|+..+++. +..+ ....+..+...|.+.|++++|...|++..+
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444455555555 55555555542 1111 123445566666666666666666666544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-09 Score=127.22 Aligned_cols=168 Identities=14% Similarity=0.086 Sum_probs=135.0
Q ss_pred CChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 002814 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV 269 (877)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 269 (877)
|.+..+++.+..+|.+.|++++|++.|+++++.... +..+|+.|..+|.+.|++++|++.|++..+.... +..+|+.+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 556778888888999999999999999998887543 6788888888899999999999999888875432 57788888
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 002814 270 IDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQ 349 (877)
Q Consensus 270 l~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 349 (877)
..++.+.| ++++|++.|++.++.... +...|+.+..+|.+.|++++|++.|++.++.. +-+...|..|..+|...|+
T Consensus 84 g~~l~~~g-~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQ-DVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhccc
Confidence 88888888 888888888888876433 56778888888888888888888888888764 2357788888888888888
Q ss_pred HHHHHHHHHHchh
Q 002814 350 MDLAFEIMAEMPA 362 (877)
Q Consensus 350 ~~~A~~~~~~m~~ 362 (877)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.9e-09 Score=103.42 Aligned_cols=214 Identities=8% Similarity=-0.002 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 002814 474 LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV-VTYNSIID 552 (877)
Q Consensus 474 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~ 552 (877)
...+..+...|.+.|++++|...|++.++....++...+..+..++.+.|++++|++.|++..+. .|+. .+|..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 34444444444445555555555554444332234444444444555555555555555555442 2322 24444555
Q ss_pred HHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHH
Q 002814 553 AFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGV 632 (877)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~ 632 (877)
++...|++++|+..++++++..|++..+. ..+...+..++.. ....+++++|+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~~~~~~~~~g~~--------~~~~~~~~~A~~~ 139 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIE-----------------KLYAIYYLKEGQK--------FQQAGNIEKAEEN 139 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHH-----------------HHHHHHHHHHHHH--------HHHTTCHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHH-----------------HHHHHHHHHHhHH--------HHHhccHHHHHHH
Confidence 55555555555555555555444432110 0111111111100 1112377889999
Q ss_pred HHHHHHCCCCCC--H-HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhccccchHHHHHHHHHHHhhcCC
Q 002814 633 FQKMHKLKIKPN--V-VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 633 ~~~m~~~g~~Pd--~-~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~ 709 (877)
|++.++ +.|+ . ..+..+..+|.. .+..+++++....+........ ......+.+++|+..++++++++|
T Consensus 140 ~~~al~--~~p~~~~~~~~~~l~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 140 YKHATD--VTSKKWKTDALYSLGVLFYN-----NGADVLRKATPLASSNKEKYAS-EKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHTT--SSCHHHHHHHHHHHHHHHHH-----HHHHHHHHHGGGTTTCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHh--cCCCcccHHHHHHHHHHHHH-----HHHHHHHHHHhcccCCHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCC
Confidence 998887 5676 3 456777777754 4455566666554433221111 111245678999999999999999
Q ss_pred CcchhHHHHHHHHH
Q 002814 710 STASAFYNALTDML 723 (877)
Q Consensus 710 ~~~~~~~~~l~~~~ 723 (877)
.+..+...|..+.
T Consensus 212 -~~~~~~~~l~~i~ 224 (228)
T 4i17_A 212 -NRTEIKQMQDQVK 224 (228)
T ss_dssp -TCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHH
Confidence 5666666655443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.09 E-value=8.4e-09 Score=103.23 Aligned_cols=201 Identities=14% Similarity=0.066 Sum_probs=159.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002814 367 PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALL 446 (877)
Q Consensus 367 pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 446 (877)
.|...+..+...|...|++++|++.|++..+....++...+..+..++...|++++|+..|++..+.. +.+..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 36788889999999999999999999999887533788888889999999999999999999999876 55678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 002814 447 GGYGKQGKYDEVRRMFEQMKADCVSPNL-------LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD---VVLYSALI 516 (877)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li 516 (877)
..|.+.|++++|...|++.++.. +.+. ..|..+...+...|++++|.+.|+++++.. |+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHH
Confidence 99999999999999999998863 2344 557888888999999999999999998763 44 56777777
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhh
Q 002814 517 DALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESAN 579 (877)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~ 579 (877)
.+|...| ..+++++...+ ..+...|.... ....+.+++|+..++++++..|++..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 7776554 44566666543 22444554443 33456789999999999999887653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.08 E-value=8.3e-09 Score=112.28 Aligned_cols=231 Identities=9% Similarity=0.021 Sum_probs=133.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCC---ChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----C-CCHHHHH
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKN---DQGKLASAMISILGRLGKVDLAKNIFETALNEGY-----G-NTVYAFS 232 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-----~-~~~~~~~ 232 (877)
....+...|++++|+..|+.++......+ ....++..+..+|...|+++.|...++++++... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44555677888888888888776532212 2345667777778888888888887777765211 1 1244666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 002814 233 ALISAYGRSGYCQEAISVFNSMKRY----NLKP-NLVTYNAVIDACGKGGVDFKHVVEIFDDMLR-----NGVQPDRITF 302 (877)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~-----~g~~p~~~t~ 302 (877)
.+...|...|++++|++.|++..+. +-.+ ...+++.+...+...| ++++|++.|++.+. .... ...++
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~-~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG-DDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 7777777777777777777766541 1000 1235566666666666 67777777776665 3222 24556
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHchhCCCCCCHHHHHHH
Q 002814 303 NSLLAVCSRGGLWEAARNLFNEMVHRG----IDQDIFTYNTLLDAICKGAQ---MDLAFEIMAEMPAKNISPNVVTYSTM 375 (877)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~pd~~~~~~l 375 (877)
..+...|.+.|++++|...+++..+.. -......+..+...|...++ +++|+..+++.... ......+..+
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~--~~~~~~~~~l 342 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLH--AYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCH--HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCCh--hHHHHHHHHH
Confidence 666666667777777777776666531 11112334444455555555 55555555542210 0112334455
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 002814 376 IDGYAKAGRLDDALNMFSEMK 396 (877)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~ 396 (877)
...|.+.|++++|.+.|++..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 555666666666666655543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2.2e-09 Score=111.06 Aligned_cols=230 Identities=11% Similarity=0.070 Sum_probs=141.4
Q ss_pred cCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHH
Q 002814 487 GGLYKEAMQIFREFKQ-------AGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE------GIRPN-VVTYNSIID 552 (877)
Q Consensus 487 ~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~li~ 552 (877)
.|++++|..+|++..+ ........++..+...|...|++++|+..|+++.+. +-.|. ..++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4455555555444433 121224567788888888899999999988888753 22233 347889999
Q ss_pred HHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHH
Q 002814 553 AFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGV 632 (877)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~ 632 (877)
.|...|++++|+..+++++........ .... .....+..+..++. ..+++++|+..
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~---~~~~~~~~la~~~~---------------~~g~~~~A~~~ 149 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLG------KFHP---DVAKQLNNLALLCQ---------------NQGKAEEVEYY 149 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHC------TTCH---HHHHHHHHHHHHHH---------------TTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcC------CCCh---HHHHHHHHHHHHHH---------------HcCCHHHHHHH
Confidence 999999999999999999887422100 0000 00011122222222 22478899999
Q ss_pred HHHHHHC------CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC---------CcchhHHHHHhhc-----c--
Q 002814 633 FQKMHKL------KIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFD---------NQVYGVAHGLLMG-----Y-- 689 (877)
Q Consensus 633 ~~~m~~~------g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~---------~~~~~~~~~l~~~-----~-- 689 (877)
|+++.+. +-.|+ ..++..+..+|...|++++|.++|+++.+.. +....+....... .
T Consensus 150 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (283)
T 3edt_B 150 YRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR 229 (283)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchh
Confidence 9999863 22443 4568889999999999999999999987542 1111111111100 0
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhh
Q 002814 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (877)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (877)
....+.++...++.+....+ .....+..|+.+|...|++++|..++.++.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 230 DSAPYGEYGSWYKACKVDSP-TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp C------------CCCCCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23345666666665544444 5577899999999999999999999988764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=5.4e-09 Score=109.17 Aligned_cols=171 Identities=15% Similarity=0.072 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCC-CC----
Q 002814 405 VSYNTVLSIYAKLGRFEEALLVCKEMESSGIR-KD----AVTYNALLGGYGKQ-GKYDEVRRMFEQMKADCVS-PN---- 473 (877)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~---- 473 (877)
.+|+.+..+|.+.|++++|+..|++..+.... .+ ..+++.+...|... |++++|+..|++.++.... .+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34555555555666666665555554432100 01 34566777788885 8888888888877653110 01
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--
Q 002814 474 LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADV------VLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-- 545 (877)
Q Consensus 474 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-- 545 (877)
..++..+...|.+.|++++|+..|++..+....... ..|..+..++...|++++|+..|++..+. .|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCc
Confidence 346778888888889999999998888875433221 15677777888899999999999888763 34322
Q ss_pred ----HHHHHHHHHh--hcCChhhhHHHHHHHhhhhhhh
Q 002814 546 ----TYNSIIDAFG--RSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 546 ----~~~~li~~~~--~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
.+..++.+|. ..+++++|+..+++++...|..
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 3444556664 4567888888777777665543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.9e-09 Score=110.14 Aligned_cols=156 Identities=16% Similarity=0.091 Sum_probs=80.1
Q ss_pred hCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC------CC-CCCHHHHHHHH
Q 002814 311 RGGLWEAARNLFNEMVHR-------GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK------NI-SPNVVTYSTMI 376 (877)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~pd~~~~~~li 376 (877)
..|++++|+..|++.++. ..+....++..+...|...|++++|++.|++..+. +- .....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 455666666666555442 11123455666666667777777777766665532 11 11234555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------C-CCCCHHHH
Q 002814 377 DGYAKAGRLDDALNMFSEMKFL------G-IGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS------G-IRKDAVTY 442 (877)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~------g-~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g-~~~~~~~~ 442 (877)
..|...|++++|++.|++.... . .+....++..+...|...|++++|...++++.+. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6666666666666666655432 0 0112334455555555555555555555555432 0 01123344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 443 NALLGGYGKQGKYDEVRRMFEQMK 466 (877)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~ 466 (877)
..+...|.+.|++++|..+|+++.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555555555544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-07 Score=95.40 Aligned_cols=272 Identities=10% Similarity=0.005 Sum_probs=173.5
Q ss_pred HHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 344 ICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEA 423 (877)
Q Consensus 344 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 423 (877)
..-.|++..++.-...+... .....-.-+.++|...|+++... .-.|....+..+...+ . ++ |
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~---~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~-~~---a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKV---TDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-D-TK---N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCC---CCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-T-TT---C
T ss_pred HHHhhHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-c-cc---H
Confidence 44567777777644443321 12333444567777777766421 1234444444444333 2 22 6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 424 LLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCV-SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 424 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
+..|+++.+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..|.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77787777665 55666667888889999999999999998876643 23577788888999999999999999999987
Q ss_pred CCCCC-----CHHHHHHHHHH--HHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhh
Q 002814 503 AGLKA-----DVVLYSALIDA--LCKNG--LVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (877)
Q Consensus 503 ~g~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~ 573 (877)
. .| +..+...|+.+ ....| ++.+|+.+|+++.+. .|+..+-..++.++.+.|++++|...++..++.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 35 24555555555 33334 899999999998764 455444445555788888888887765544443
Q ss_pred hhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 002814 574 QKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAIL 652 (877)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll 652 (877)
.|+-. + +.+..| |..++..++
T Consensus 241 ~p~~~--------------------------------------------------------~--k~~~~p~~~~~LaN~i 262 (310)
T 3mv2_B 241 YYSVE--------------------------------------------------------Q--KENAVLYKPTFLANQI 262 (310)
T ss_dssp HHHTT--------------------------------------------------------T--CHHHHSSHHHHHHHHH
T ss_pred ccccc--------------------------------------------------------c--cccCCCCCHHHHHHHH
Confidence 22200 0 000124 344454566
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhccccchHHHHHHHHHHHhhc
Q 002814 653 NACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLM 707 (877)
Q Consensus 653 ~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~ 707 (877)
......|+ +|.++++++.+.+|++..+. ++.+....|+++...
T Consensus 263 ~l~~~lgk--~a~~l~~qL~~~~P~hp~i~----------d~~~k~~~Fd~~~~k 305 (310)
T 3mv2_B 263 TLALMQGL--DTEDLTNQLVKLDHEHAFIK----------HHQEIDAKFDELVRK 305 (310)
T ss_dssp HHHHHTTC--TTHHHHHHHHHTTCCCHHHH----------HHHHHHHHHHHHHHT
T ss_pred HHHHHhCh--HHHHHHHHHHHhCCCChHHH----------HHHHHHHHHHHHHHH
Confidence 56666676 88999999999888876553 456677777776543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.8e-07 Score=94.34 Aligned_cols=223 Identities=9% Similarity=0.027 Sum_probs=169.6
Q ss_pred HccCCH-HHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----H
Q 002814 167 GNRGEW-SKAIQCFAFAVKREERKNDQGKLASAMISILGRLG--KVDLAKNIFETALNEGYGNTVYAFSALISAY----G 239 (877)
Q Consensus 167 ~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~----~ 239 (877)
.+.|.+ ++|+++++.++..+ |....+++.-..++...| +++++++.++.++...+. +..+|+.-...+ .
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n---P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL---ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC---cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHH
Confidence 334444 68999999999886 566778888888888888 999999999999887654 667787766666 5
Q ss_pred hc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 002814 240 RS---GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK--HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (877)
Q Consensus 240 ~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~--~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 314 (877)
.. +++++++++++++.+...+ |-.+|+.-.-.+.+.+ .++ ++++.++++++..+. |...|+....++.+.+.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~-~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFD-LHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGG
T ss_pred hccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc-ccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 55 7889999999999886554 7888888887777777 777 889999999887654 77778777777777776
Q ss_pred ------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHchhCC--CCCCHHHHHHHHHHHHHcCCH
Q 002814 315 ------WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDL-AFEIMAEMPAKN--ISPNVVTYSTMIDGYAKAGRL 385 (877)
Q Consensus 315 ------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~pd~~~~~~li~~~~~~g~~ 385 (877)
++++++.+++++.... -|...|+.+-..+.+.|+..+ +.++.+++.+.+ -..+...+..+.++|.+.|+.
T Consensus 196 ~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 196 LATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp GCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred cchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 8888888888887753 478888888888888887444 445666655432 123667777777777777888
Q ss_pred HHHHHHHHHHHH
Q 002814 386 DDALNMFSEMKF 397 (877)
Q Consensus 386 ~~A~~~~~~m~~ 397 (877)
++|+++++.+.+
T Consensus 275 ~~A~~~~~~l~~ 286 (306)
T 3dra_A 275 NESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888877765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=4.5e-08 Score=102.10 Aligned_cols=132 Identities=7% Similarity=0.058 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCCC-C----
Q 002814 230 AFSALISAYGRSGYCQEAISVFNSMKRYNLK-PN----LVTYNAVIDACGKG-GVDFKHVVEIFDDMLRNGVQP-D---- 298 (877)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~-g~~~~~a~~~~~~m~~~g~~p-~---- 298 (877)
+|+.+..+|.+.|++++|+..|++..+.... .+ ..+|+.+...|... | ++++|+..|++.++..... +
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg-~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH-DYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhCCChHHH
Confidence 4444444444444444444444444321000 01 23444455555553 5 5555555555554321000 0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 002814 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDI------FTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (877)
Q Consensus 299 ~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (877)
..++..+...+.+.|++++|+..|++..+....... ..|..+..++...|++++|+..|++..+
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 234555555555566666666666555554221111 1345555555556666666666665554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.93 E-value=4.2e-07 Score=92.95 Aligned_cols=247 Identities=9% Similarity=-0.042 Sum_probs=156.2
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 002814 308 VCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDD 387 (877)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 387 (877)
-..-.|.+..++.- ..+...........-+.++|...|+++.. + .-.|....+..+...+ ..+
T Consensus 22 n~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~------~---~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ------D---PTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC------C---SSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC------C---CCCHHHHHHHHHHHHh-ccc----
Confidence 34445677666652 22222122233333445666666665531 1 1223433443333333 222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 388 ALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI-RKDAVTYNALLGGYGKQGKYDEVRRMFEQMK 466 (877)
Q Consensus 388 A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 466 (877)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+- .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777776654 45666666777888888888888888888776552 1356677778888888899999999998887
Q ss_pred HCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 467 ADCVSP-----NLLTYSTLIDVY--SKGG--LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 467 ~~g~~p-----~~~t~~~li~~~--~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
+. .| +..+...|+.++ ...| ++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 45 245555565553 3234 8889999999987653 4533444445578889999999999987654
Q ss_pred C-----CC---CC-CHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhh
Q 002814 538 E-----GI---RP-NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (877)
Q Consensus 538 ~-----g~---~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (877)
. .. .| |..++..+|......|+ +|.+++.++.+..|+.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 2 01 24 44466577766666776 78888888888887765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.8e-08 Score=96.80 Aligned_cols=173 Identities=12% Similarity=0.040 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHH----------------HHHHHHhcCChHHHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASA----------------MISILGRLGKVDLAKNIFETAL 220 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~ 220 (877)
+.+......+.+.|++++|+..|+.++... |.+..++.. +..+|.+.|++++|+..|++++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN---IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344445666788999999999999999875 344455555 6777777777777777777777
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCCCCH
Q 002814 221 NEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGG-VDFKHVVEIFDDMLRNGVQPDR 299 (877)
Q Consensus 221 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~~a~~~~~~m~~~g~~p~~ 299 (877)
+..+. +..++..+..+|...|++++|+..|++..+..+. +..+|..+...+...| ...+.+...++.... ..|..
T Consensus 82 ~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 157 (208)
T 3urz_A 82 QKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQ 157 (208)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHH
T ss_pred HHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchh
Confidence 66433 5667777777777777777777777777664322 4566666666654433 022334444444321 12222
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 002814 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYN 338 (877)
Q Consensus 300 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 338 (877)
..+..+..++...|++++|+..|++.++. .|+.....
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 23333444455556666666666666653 35544333
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-06 Score=96.90 Aligned_cols=205 Identities=11% Similarity=0.002 Sum_probs=133.3
Q ss_pred HHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 351 DLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (877)
Q Consensus 351 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 430 (877)
+.+..+|+++.... +-+...|...+..+.+.|+.++|.++|++.... +.+...+. .|....+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHH
Confidence 34566777777642 335677777777788888888888888888776 33332222 22222111111 2222
Q ss_pred HHCC---------C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Q 002814 431 ESSG---------I---RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK-GGLYKEAMQIF 497 (877)
Q Consensus 431 ~~~g---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A~~~~ 497 (877)
.+.- . .....+|...+..+.+.+..+.|..+|++. .. ...+...|......-.. .++.+.|..+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 2110 0 011355677777777788899999999998 32 12344455433322222 33699999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhh
Q 002814 498 REFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (877)
Q Consensus 498 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~ 573 (877)
+...+.. .-+...|...++...+.|+.+.|..+|+++. -....|...++.-...|+.+.+..++++++..
T Consensus 344 e~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 344 SSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9998754 2245667778888888999999999999973 25678888888778889998888888887764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.5e-08 Score=99.51 Aligned_cols=216 Identities=12% Similarity=0.004 Sum_probs=139.6
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHH
Q 002814 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYA 230 (877)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~ 230 (877)
..+++.+..+...+.+.|++++|+..|+.++...+..+....++..+..++.+.|++++|+..|+++++..+. ....+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3446667778888899999999999999999886443333668888999999999999999999999886432 23567
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002814 231 FSALISAYGR--------SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITF 302 (877)
Q Consensus 231 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~ 302 (877)
+..+..++.+ .|++++|+..|+++.+.... +...+..+.... .....+ ...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~--------~~~~~~-----------~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIR--------ELRAKL-----------ARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHH--------HHHHHH-----------HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHH--------HHHHHH-----------HHHH
Confidence 7888888888 99999999999998874322 222221111000 000000 1124
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHc----------CCHHHHHHHHHHchhCCCCCC--
Q 002814 303 NSLLAVCSRGGLWEAARNLFNEMVHRGIDQ--DIFTYNTLLDAICKG----------AQMDLAFEIMAEMPAKNISPN-- 368 (877)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~pd-- 368 (877)
..+...|.+.|++++|+..|+++++..... ....+..+..+|.+. |++++|+..|+++.+......
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 456666777777777777777776653211 234566666666655 677777777777766422111
Q ss_pred HHHHHHHHHHHHHcCCHHHH
Q 002814 369 VVTYSTMIDGYAKAGRLDDA 388 (877)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A 388 (877)
......+-..+.+.++++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 23444455555555555443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-07 Score=85.10 Aligned_cols=95 Identities=21% Similarity=0.284 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDAL 519 (877)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 519 (877)
..+..+...+...|++++|..+|+++.+.+ +.+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 113 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 113 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 333333333444444444444444433321 1123333444444444444444444444443332 11333444444444
Q ss_pred HHcCChHHHHHHHHHHH
Q 002814 520 CKNGLVESAVSLLDEMT 536 (877)
Q Consensus 520 ~~~g~~~~A~~~~~~m~ 536 (877)
.+.|++++|...|+++.
T Consensus 114 ~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 114 YKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HTTTCHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHH
Confidence 44444444444444443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.2e-08 Score=117.59 Aligned_cols=130 Identities=15% Similarity=0.016 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 228 VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLA 307 (877)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 307 (877)
...+..+...|.+.|++++|++.|+++.+.... +...|..+..++...| ++++|++.|+++++.... +...+..+..
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~-~~~~~~~lg~ 509 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLTG-DYDSATKHFTEVLDTFPG-ELAPKLALAA 509 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTT-CSHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 344444444444444444444444444432211 3344444444444444 455555555544443211 3344444444
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 002814 308 VCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (877)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (877)
+|.+.|++++ ++.|+++++.. +.+...|..+..+|.+.|++++|++.|++..+
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 4555555555 55555544432 12344445555555555555555555555444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-07 Score=85.55 Aligned_cols=127 Identities=21% Similarity=0.320 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 373 STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ 452 (877)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 452 (877)
..+...|...|++++|.++|+++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.+.
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 334444444444444444444444332 2233444444444444444555544444444332 23344444445555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 453 GKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 453 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
|++++|.+.|+++.+.. +.+...+..+...|.+.|++++|...|+++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555544431 22344445555555555555555555555544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.6e-08 Score=98.06 Aligned_cols=210 Identities=11% Similarity=-0.019 Sum_probs=131.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHH
Q 002814 332 QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN---VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGI--GLDRVS 406 (877)
Q Consensus 332 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~~ 406 (877)
.+...+..+...+.+.|++++|++.|+++.+.... + ...+..+..+|.+.|++++|+..|++..+... ......
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35666777777777888888888888877765322 2 56677777777888888888888887776521 112345
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002814 407 YNTVLSIYAK--------LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYS 478 (877)
Q Consensus 407 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 478 (877)
+..+..++.. .|++++|+..|+++++.. +.+.....++.... .+... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~--------------~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIR--------------ELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHH--------------HHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHH--------------HHHHH----HHHHHH
Confidence 6666667777 777777777777776653 22222222221110 00000 011245
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHCCCCCCH--
Q 002814 479 TLIDVYSKGGLYKEAMQIFREFKQAGLKA--DVVLYSALIDALCKN----------GLVESAVSLLDEMTKEGIRPNV-- 544 (877)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~-- 544 (877)
.+...|.+.|++++|+..|+++++..... ....+..+..+|... |++++|+..|+++++. .|+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~ 230 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPL 230 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChH
Confidence 67778888999999999999888754221 245677777778766 8889999999998874 3443
Q ss_pred --HHHHHHHHHHhhcCChhhh
Q 002814 545 --VTYNSIIDAFGRSATTECT 563 (877)
Q Consensus 545 --~~~~~li~~~~~~g~~~~a 563 (877)
.....+-..+.+.++++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 2344444445555554443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-07 Score=92.82 Aligned_cols=134 Identities=15% Similarity=0.049 Sum_probs=83.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002814 410 VLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGL 489 (877)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 489 (877)
+..+|.+.|++++|+..|++.++.. +.+...+..+...|...|++++|...|++.++.. +.+..+|..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 6677777777777777777777665 5567777777777777777777777777777652 3356677777777655443
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 490 --YKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNS 549 (877)
Q Consensus 490 --~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 549 (877)
.+.+...++.... ..|....+..+..++...|++++|+..|++.++ +.|+......
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~ 195 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 3344455544432 122222333445556667777888888887776 4566554433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-06 Score=90.50 Aligned_cols=220 Identities=12% Similarity=0.068 Sum_probs=150.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HcC---C
Q 002814 207 GKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG--YCQEAISVFNSMKRYNLKPNLVTYNAVIDAC----GKG---G 277 (877)
Q Consensus 207 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~---g 277 (877)
...++|+++++.++...+. +..+|+.--..+...| ++++++++++.+....++ +..+|+.-...+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence 3346899999999887554 6788999888888888 999999999999886544 566777655555 444 5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC------
Q 002814 278 VDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE--AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQ------ 349 (877)
Q Consensus 278 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------ 349 (877)
++++++++++++++...+ +-.+|+.-.-++.+.|.++ ++++.++++++... .|-..|+.....+.+.++
T Consensus 125 -~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 125 -DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp -CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred -CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhh
Confidence 778888888888876443 6677777777777777777 88888888887653 366777766666666665
Q ss_pred HHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002814 350 MDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDD-ALNMFSEMKFLG--IGLDRVSYNTVLSIYAKLGRFEEALLV 426 (877)
Q Consensus 350 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~pd~~~~~~li~~~~~~g~~~~A~~~ 426 (877)
++++++.++++...... |...|+.+...+.+.|+..+ +..+..++.+.+ -..+...+..++++|.+.|+.++|+++
T Consensus 202 ~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 67777777776665443 66777777766766666433 333444433321 123455666666666666666666666
Q ss_pred HHHHHH
Q 002814 427 CKEMES 432 (877)
Q Consensus 427 ~~~m~~ 432 (877)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.2e-07 Score=89.53 Aligned_cols=163 Identities=11% Similarity=0.024 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHCCCCCCHHHHH
Q 002814 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLG----RFEEALLVCKEMESSGIRKDAVTYN 443 (877)
Q Consensus 368 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~ 443 (877)
+...+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|+..|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 33344444444444444444444444444332 23333334443333 3 4444444444444432 334444
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 444 ALLGGYGK----QGKYDEVRRMFEQMKADCVS-PNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSA 514 (877)
Q Consensus 444 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 514 (877)
.|...|.. .+++++|+..|++..+.|.. .+...+..|...|.. .+++++|...|++..+.+ .+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHH
Confidence 44444443 44455555555544443210 013444444444444 444555555555554431 12334444
Q ss_pred HHHHHHHc-C-----ChHHHHHHHHHHHHCC
Q 002814 515 LIDALCKN-G-----LVESAVSLLDEMTKEG 539 (877)
Q Consensus 515 li~~~~~~-g-----~~~~A~~~~~~m~~~g 539 (877)
|...|.+. | +.++|+..|++..+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 44444432 2 4555555555555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.79 E-value=7e-06 Score=91.82 Aligned_cols=344 Identities=10% Similarity=-0.008 Sum_probs=214.5
Q ss_pred CCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHH----hcC
Q 002814 170 GEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGK-VDLAKNIFETALNE-GYG-NTVYAFSALISAYG----RSG 242 (877)
Q Consensus 170 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-g~~-~~~~~~~~li~~~~----~~g 242 (877)
++++.+..+|++++..- | +..+|...+....+.+. .+....+|+.++.. |.. .+...|...+..+. ..|
T Consensus 28 ~~~e~~~~iferal~~~---p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~ 103 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS---Y-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQT 103 (493)
T ss_dssp TCHHHHHHHHHHHSTTC---C-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHH
T ss_pred CCHHHHHHHHHHHhccC---C-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhH
Confidence 77888888888888752 2 45677777776666653 45677788887653 322 35677877776554 245
Q ss_pred CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHc-------------CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 243 YCQEAISVFNSMKRYNLKPNL-VTYNAVIDACGK-------------GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAV 308 (877)
Q Consensus 243 ~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~-------------~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 308 (877)
+.+.+..+|++....... +. ..|......-.. .+ .+..|..+++++...--..+...|...+..
T Consensus 104 ~~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~-~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~ 181 (493)
T 2uy1_A 104 RIEKIRNGYMRALQTPMG-SLSELWKDFENFELELNKITGKKIVGDTLP-IFQSSFQRYQQIQPLIRGWSVKNAARLIDL 181 (493)
T ss_dssp HHHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhh-hHHHHHHHHHHHHHHhccccHHHHHHHHhH-HHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 677888888888873221 22 222222211100 01 233444445444321000133355555544
Q ss_pred HHhC--CC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH
Q 002814 309 CSRG--GL-----WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK 381 (877)
Q Consensus 309 ~~~~--g~-----~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~ 381 (877)
-... |- .+.+..+|++++.. ++.+...|...+..+.+.|+.++|.++|++.... +.+...|. .|..
T Consensus 182 E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~ 254 (493)
T 2uy1_A 182 EMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGL 254 (493)
T ss_dssp HHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHH
T ss_pred HhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHh
Confidence 3322 11 34577889998875 3456888888899899999999999999998887 33333332 2333
Q ss_pred cCCHHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 382 AGRLDDALNMFSEMKFLG---------IGL---DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY 449 (877)
Q Consensus 382 ~g~~~~A~~~~~~m~~~g---------~~p---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 449 (877)
..+.++. ++.+.+.- ..+ ....|...+..+.+.+..+.|..+|++. +.. ..+..+|......-
T Consensus 255 ~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE 329 (493)
T 2uy1_A 255 VMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIE 329 (493)
T ss_dssp HTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHH
T ss_pred hcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHH
Confidence 2222222 22222110 001 1245666677777788899999999999 322 23445554333333
Q ss_pred HHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Q 002814 450 GKQG-KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESA 528 (877)
Q Consensus 450 ~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 528 (877)
...+ +.+.|..+|+...+.. .-+...|...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+
T Consensus 330 ~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~ 403 (493)
T 2uy1_A 330 YYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELF 403 (493)
T ss_dssp HHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHH
Confidence 3333 6999999999998753 3345667777888888999999999999973 2678899999888889999999
Q ss_pred HHHHHHHHH
Q 002814 529 VSLLDEMTK 537 (877)
Q Consensus 529 ~~~~~~m~~ 537 (877)
..+++++.+
T Consensus 404 r~v~~~~~~ 412 (493)
T 2uy1_A 404 RELVDQKMD 412 (493)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.78 E-value=4e-07 Score=89.70 Aligned_cols=175 Identities=9% Similarity=0.001 Sum_probs=106.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 002814 318 ARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAG----RLDDALNMFS 393 (877)
Q Consensus 318 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g----~~~~A~~~~~ 393 (877)
|.+.|++..+.| +...+..|...|...+++++|++.|++..+.| +...+..|...|.. + ++++|+++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 455555555543 55556666666666666666666666655543 45555555555555 4 6666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 002814 394 EMKFLGIGLDRVSYNTVLSIYAK----LGRFEEALLVCKEMESSGIR-KDAVTYNALLGGYGK----QGKYDEVRRMFEQ 464 (877)
Q Consensus 394 ~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 464 (877)
+..+.| +...+..|...|.. .+++++|+..|++..+.|.. .+...+..|...|.. .++.++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 665544 45556666666655 56677777777776665410 115666666666766 6677777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 002814 465 MKADCVSPNLLTYSTLIDVYSKG-G-----LYKEAMQIFREFKQAG 504 (877)
Q Consensus 465 m~~~g~~p~~~t~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 504 (877)
..+. ..+...+..|..+|... | +.++|...|++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7665 12444566666666543 2 6777777777777665
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.6e-06 Score=87.11 Aligned_cols=222 Identities=11% Similarity=0.077 Sum_probs=156.9
Q ss_pred HccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-C
Q 002814 167 GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLG-KVDLAKNIFETALNEGYGNTVYAFSALISAYGRS-G-Y 243 (877)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g-~ 243 (877)
......++|+++++.++..+ |.+..+++.-..++...| .+++++++++.++...++ +..+|+.-...+.+. + +
T Consensus 65 ~~~e~se~AL~lt~~~L~~n---P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN---PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred HhCCCCHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 33445578999999999886 566778888888888888 599999999999987654 788999888888777 7 8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC-
Q 002814 244 CQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK--------HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL- 314 (877)
Q Consensus 244 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~--------~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~- 314 (877)
+++++++++++.+...+ |..+|+.-.-.+.+.+ .++ ++++.++++++..+. |...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~-~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFS-TLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc-cccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 89999999999986654 7888887666555544 344 888889988887554 77788888777777775
Q ss_pred ------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHchhCC----
Q 002814 315 ------WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQM--------------------DLAFEIMAEMPAKN---- 364 (877)
Q Consensus 315 ------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~g---- 364 (877)
++++++.+++++... +-|...|+-+-..+.+.|+. .+..+...++...+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 688888888888764 34778888777777776653 22333333333221
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 365 -ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (877)
Q Consensus 365 -~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (877)
-.++...+..|++.|...|+.++|.++++.+.
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 02355555666666666666666666666654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.74 E-value=5.2e-07 Score=89.82 Aligned_cols=188 Identities=15% Similarity=0.077 Sum_probs=128.2
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT--VYAFSA 233 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~ 233 (877)
++.+..+...+.+.|++++|+..|+.++...+..+....++..++.++.+.|++++|+..|+++++..+... ..++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445556677788999999999999999987644444446778889999999999999999999988654321 134555
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Q 002814 234 LISAYGR------------------SGYCQEAISVFNSMKRYNLKPN-LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNG 294 (877)
Q Consensus 234 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g 294 (877)
+..++.+ .|++++|+..|+++.+.. |+ ..++....... .+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~-----------~~~~~~~--- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV-----------FLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH-----------HHHHHHH---
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH-----------HHHHHHH---
Confidence 5555544 466777777777777643 32 22221111100 0000000
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHchhCC
Q 002814 295 VQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD--IFTYNTLLDAICKGAQMDLAFEIMAEMPAKN 364 (877)
Q Consensus 295 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 364 (877)
.....+...|.+.|++++|+..|+++++...... ...+..+..+|.+.|++++|++.++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0123466778889999999999999988632111 2568888999999999999999999888764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.74 E-value=8.8e-08 Score=112.44 Aligned_cols=177 Identities=12% Similarity=-0.009 Sum_probs=145.8
Q ss_pred HHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 380 AKAGRLDDALNMFSEMK--------FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK 451 (877)
Q Consensus 380 ~~~g~~~~A~~~~~~m~--------~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 451 (877)
...|++++|++.|++.. +.. +.+...+..+...|.+.|++++|+..|+++.+.. +.+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999988 432 4456788889999999999999999999998765 6678899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 002814 452 QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSL 531 (877)
Q Consensus 452 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 531 (877)
.|++++|...|++.++.. +-+...|..+..+|.+.|++++ .+.|++.++.+. -+...|..+..+|.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998863 3367888999999999999999 999999998763 3778999999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHhhcCChhhh
Q 002814 532 LDEMTKEGIRPNV-VTYNSIIDAFGRSATTECT 563 (877)
Q Consensus 532 ~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a 563 (877)
|+++.+ +.|+. ..|..+..++...++.+++
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~ 587 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRSTSEV 587 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC-------C
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCCCCCC
Confidence 999987 45765 4777788887776654433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=4.2e-08 Score=90.75 Aligned_cols=143 Identities=10% Similarity=-0.027 Sum_probs=91.1
Q ss_pred HHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 002814 165 ELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYC 244 (877)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 244 (877)
.+...|++++|++.|..+.... +.....+..+..+|.+.|++++|++.|+++++..+. +..+|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~---p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP---RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH---HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhcccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 3445667777777777766553 233445556777777777777777777777776433 677777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 002814 245 QEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEI-FDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (877)
Q Consensus 245 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~-~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 314 (877)
++|+..|++..+.... +..+|..+...+.+.| ++++|.+. +++.++.... +..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~-~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKND-VTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHC-SSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 7777777777764322 4666777777777766 65554443 4666654322 45556655555555553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.73 E-value=7.9e-08 Score=91.64 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=36.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 002814 283 VVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQ-DIFTYNTLLDAICKGAQMDLAFEIMAEM 360 (877)
Q Consensus 283 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 360 (877)
|+..+++.++.... +...+..+..++...|++++|...|+++++....+ +...+..+...+...|+.++|...|++.
T Consensus 93 a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 93 ELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 34444444443211 34445555555555555555555555555443211 2334555555555555555555555443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.3e-08 Score=92.57 Aligned_cols=100 Identities=6% Similarity=-0.066 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHH-HH
Q 002814 625 EILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALS-LF 701 (877)
Q Consensus 625 ~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~-~~ 701 (877)
++++|++.|++.++ +.| +..+|..++.+|...|++++|...|+++++.+|.+..+..++...+ ..|++++|.+ ++
T Consensus 46 ~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~ 123 (150)
T 4ga2_A 46 EYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWV 123 (150)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34444444544444 334 3344555555555566666666666665555555555544443332 3444444333 34
Q ss_pred HHHhhcCCCcchhHHHHHHHHHHhcC
Q 002814 702 DEVKLMDSSTASAFYNALTDMLWHFG 727 (877)
Q Consensus 702 ~~~~~~~~~~~~~~~~~l~~~~~~~g 727 (877)
+++++++| .+..+|...+.++...|
T Consensus 124 ~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 124 ERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred HHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 55555555 45555555555555444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.7e-07 Score=93.31 Aligned_cols=165 Identities=10% Similarity=-0.012 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHH-H
Q 002814 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTM-I 376 (877)
Q Consensus 298 ~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l-i 376 (877)
+...+..+...+...|++++|...|+++++.. +.+...+..+...|.+.|++++|++.++++.... |+....... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 44566677778888899999999999888764 3367788888889999999999999998887653 444433332 3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCC
Q 002814 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD--AVTYNALLGGYGKQGK 454 (877)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~ 454 (877)
..+...++.++|+..|++..... +.+...+..+...|...|++++|+..|+++.+.. +.+ ...+..++..|...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCC
Confidence 33667777888888888887764 5567788888888888888888888888887764 222 6678888888888888
Q ss_pred HHHHHHHHHHHHH
Q 002814 455 YDEVRRMFEQMKA 467 (877)
Q Consensus 455 ~~~A~~~~~~m~~ 467 (877)
.++|...|++.+.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 8888888776543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.7e-07 Score=89.32 Aligned_cols=160 Identities=12% Similarity=0.085 Sum_probs=92.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhc
Q 002814 409 TVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDV-YSKG 487 (877)
Q Consensus 409 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~~~ 487 (877)
.+...+.+.|++++|+..|++..+.. +.+...+..+...|.+.|++++|...|+++.+.. |+...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 34455556666666666666654433 3455666666666666666666666666655432 233332222111 1121
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCChhhhHHH
Q 002814 488 GLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDAFGRSATTECTVDD 566 (877)
Q Consensus 488 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~ 566 (877)
+...+|...|++..+... -+...+..+...+...|++++|+..|+++++....+ +...+..+..++...|+.++|+..
T Consensus 88 ~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 222345666777666542 256677777777777777777777777777643222 244667777777777777777777
Q ss_pred HHHHhh
Q 002814 567 VERDLG 572 (877)
Q Consensus 567 ~~~~l~ 572 (877)
+++++.
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666553
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=3.3e-07 Score=95.16 Aligned_cols=166 Identities=10% Similarity=0.011 Sum_probs=125.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-
Q 002814 401 GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYST- 479 (877)
Q Consensus 401 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~- 479 (877)
+.+...+..+...+.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|...++++... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3345566677778888888888888888887765 556778888888888888888888888887664 345443322
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhh
Q 002814 480 LIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN---VVTYNSIIDAFGR 556 (877)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~ 556 (877)
....+.+.++.++|...|++..+... .+...+..+...|...|++++|+..|+++.+. .|+ ...+..++..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHH
Confidence 23335667777788888888887653 36788888888888899999999998888875 343 4578888888888
Q ss_pred cCChhhhHHHHHHHhh
Q 002814 557 SATTECTVDDVERDLG 572 (877)
Q Consensus 557 ~g~~~~a~~~~~~~l~ 572 (877)
.|+.++|...+++++.
T Consensus 268 ~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 268 LGTGDALASXYRRQLY 283 (287)
T ss_dssp HCTTCHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHH
Confidence 8888888888777664
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-06 Score=86.89 Aligned_cols=66 Identities=11% Similarity=-0.021 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 333 DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISP--NVVTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (877)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (877)
+...+..+...+.+.|++++|+..|+++.+..... ....+..+..+|.+.|++++|+..|+++.+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34455666677777777777777777777643211 1345666777777777777777777777765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-05 Score=83.79 Aligned_cols=246 Identities=10% Similarity=0.049 Sum_probs=133.5
Q ss_pred HcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 416 KLGRF-EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK----------YDEVRRMFEQMKADCVSPNLLTYSTLIDVY 484 (877)
Q Consensus 416 ~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 484 (877)
+.|.+ ++|+.+++.++..+ +.+..+|+.--..+...+. +++++.+++.++... +-+..+|+--...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44444 36677777666654 4455555554444333332 345555555555432 22455555555555
Q ss_pred HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChh
Q 002814 485 SKGG--LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL-VESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTE 561 (877)
Q Consensus 485 ~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 561 (877)
.+.| .+++++.+++++.+... -|...|+.-...+.+.|. ++++++.++++++.... |...|+.....+.+.+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 5554 25555555555555442 255555555555555555 35555555555544322 3444444443333222110
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCC
Q 002814 562 CTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKI 641 (877)
Q Consensus 562 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~ 641 (877)
.+- ..+. ...+.++++++.+++.+. +
T Consensus 197 ~~~-----------------------------------------------~~~~-----~~~~~~~eEle~~~~ai~--~ 222 (331)
T 3dss_A 197 DSG-----------------------------------------------PQGR-----LPENVLLKELELVQNAFF--T 222 (331)
T ss_dssp -----------------------------------------------------C-----CCHHHHHHHHHHHHHHHH--H
T ss_pred ccc-----------------------------------------------cccc-----cchHHHHHHHHHHHHHHH--h
Confidence 000 0000 001256778889998887 5
Q ss_pred CC-CHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHhcCCcchhHHHHHhhcc----ccchHHHHHHHHHHHh
Q 002814 642 KP-NVVTFSAILNACSRC-----------NSFEDASMLLEELRLFDNQVYGVAHGLLMGY----RDNIWVQALSLFDEVK 705 (877)
Q Consensus 642 ~P-d~~t~~~ll~a~~~~-----------g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~A~~~~~~~~ 705 (877)
.| |...|+.+-..+.+. +.++++++.++++.+.+|++-.++..++... ..+..+++...+++++
T Consensus 223 ~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 302 (331)
T 3dss_A 223 DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 302 (331)
T ss_dssp STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 67 566677676666665 4578888888888888887655544432211 2456678888888888
Q ss_pred hcCCCcchhHHHHHH
Q 002814 706 LMDSSTASAFYNALT 720 (877)
Q Consensus 706 ~~~~~~~~~~~~~l~ 720 (877)
++|| -....|.-|.
T Consensus 303 ~~Dp-~r~~~y~d~~ 316 (331)
T 3dss_A 303 AVDP-MRAAYLDDLR 316 (331)
T ss_dssp HHCG-GGHHHHHHHH
T ss_pred HhCc-chhhHHHHHH
Confidence 8888 5556665543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=5.1e-07 Score=103.96 Aligned_cols=154 Identities=10% Similarity=-0.028 Sum_probs=103.4
Q ss_pred cCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002814 169 RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAI 248 (877)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 248 (877)
.|++++|++.|+++++.. +.+..++..+...+...|++++|.+.|+++++.... +..++..+...|...|++++|+
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 367788888888887764 445667788888888888888888888888876433 6778888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHH
Q 002814 249 SVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG---GLWEAARNLFNEM 325 (877)
Q Consensus 249 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~~~A~~~~~~m 325 (877)
+.|++..+.... +...|..+..++.+.| ++++|.+.|++.++... .+...+..+...+... |++++|.+.+++.
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAG-QAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 888888765432 5677777888888888 88888888888877533 2566777777888887 8888888888887
Q ss_pred HHcC
Q 002814 326 VHRG 329 (877)
Q Consensus 326 ~~~g 329 (877)
++.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 7764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-07 Score=86.57 Aligned_cols=102 Identities=12% Similarity=0.025 Sum_probs=91.9
Q ss_pred CCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHH
Q 002814 641 IKPNV-VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNA 718 (877)
Q Consensus 641 ~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 718 (877)
+.|+. ..+..+..++.+.|++++|.+.|+.+...+|.+..++.++...+ ..|++++|+..|+++++++| .+...|..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHH
Confidence 67754 45888999999999999999999999999999999888876655 68999999999999999999 78889999
Q ss_pred HHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 719 LTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 719 l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
++.+|..+|++++|...+.++....
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=8.7e-07 Score=102.00 Aligned_cols=152 Identities=8% Similarity=-0.039 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 348 AQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVC 427 (877)
Q Consensus 348 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 427 (877)
|++++|++.|++..+... -+...|..+...|.+.|++++|++.|++..+.. +.+...+..+...|...|++++|...|
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 445555555555444321 134445555555555555555555555554442 223444444555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 002814 428 KEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKG---GLYKEAMQIFREFKQA 503 (877)
Q Consensus 428 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~A~~~~~~m~~~ 503 (877)
++..+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...|... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 5544433 3334444445555555555555555555444431 12344444444444444 4455555544444443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.6e-07 Score=94.49 Aligned_cols=95 Identities=7% Similarity=-0.061 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHchhC----CCCCC-HH
Q 002814 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQ-----DIFTYNTLLDAICKGAQMDLAFEIMAEMPAK----NISPN-VV 370 (877)
Q Consensus 301 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd-~~ 370 (877)
++..+..+|.. |++++|+..|++.++..... ...+++.+...|.+.|++++|++.|++.... +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 34444455544 55555555555544321000 0234555555555566666665555554431 11111 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 371 TYSTMIDGYAKAGRLDDALNMFSEMK 396 (877)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (877)
.+..++.++...|++++|+..|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44445555555566666666666555
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.7e-06 Score=89.44 Aligned_cols=103 Identities=13% Similarity=0.004 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 552 (877)
+...+..+...+.+.|++++|...|++.++... .+...|..+..+|.+.|++++|+..+++.++.. .-+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 456667777778888888888888888877542 367778888888888888888888888887742 224557778888
Q ss_pred HHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 553 AFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
++...|++++|+..++++++..|++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccc
Confidence 8888888888888888888887765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.8e-07 Score=82.13 Aligned_cols=102 Identities=15% Similarity=-0.021 Sum_probs=90.5
Q ss_pred CCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHH
Q 002814 641 IKPNV-VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNA 718 (877)
Q Consensus 641 ~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 718 (877)
+.|+. ..+...+..|.+.|++++|.+.|+++++.+|.+..+..++...+ ..|++++|++.++++++++| .+...|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHH
Confidence 66754 45888999999999999999999999999999888877776555 78999999999999999999 78889999
Q ss_pred HHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 719 LTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 719 l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
++.+|...|++++|...++++++..
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999987654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.8e-05 Score=81.21 Aligned_cols=169 Identities=12% Similarity=0.071 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-CHHHHHHHH
Q 002814 281 KHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGG-LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG-A-QMDLAFEIM 357 (877)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g-~~~~A~~~~ 357 (877)
++|++++++++..... +..+|+.--.++...| .+++++++++.++... +.+..+|+.-...+.+. + +++++++++
T Consensus 71 e~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 3444444444443221 2233343333333444 3555555555555432 22344444444444443 4 455555555
Q ss_pred HHchhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-------HHH
Q 002814 358 AEMPAKNISPNVVTYSTMIDGYAKAGRLD--------DALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGR-------FEE 422 (877)
Q Consensus 358 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~-------~~~ 422 (877)
+++.+...+ |...|+.....+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.++ +++
T Consensus 149 ~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 555544322 4455554444444444443 5566666555543 3355555555555555544 456
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002814 423 ALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454 (877)
Q Consensus 423 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 454 (877)
+++.+++++... +-|...|+.+-..+.+.|+
T Consensus 227 ELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 227 ELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 666666665544 4556666655555555444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1e-05 Score=84.00 Aligned_cols=128 Identities=16% Similarity=0.057 Sum_probs=66.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----C-CCCCC-HHHHH
Q 002814 410 VLSIYAKLGRFEEALLVCKEMESSGIR-KD----AVTYNALLGGYGKQGKYDEVRRMFEQMKA----D-CVSPN-LLTYS 478 (877)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~-~~t~~ 478 (877)
+...+...|++++|+..|++..+.... .+ ..+++.+...|...|++++|...|+++++ . +..+. ..+|.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 334444444555555555554442111 11 22455555555555555555555555542 1 11111 23556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCC-hHHHHHHHHHHHH
Q 002814 479 TLIDVYSKGGLYKEAMQIFREFKQA----GLKAD-VVLYSALIDALCKNGL-VESAVSLLDEMTK 537 (877)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 537 (877)
.+...|.+.|++++|.+.+++.++. +.... ..+|..+..+|.+.|+ +++|.+.|++...
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 6666666666666666666665431 11111 4566777777777774 5777777777654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.51 E-value=6.9e-06 Score=80.59 Aligned_cols=127 Identities=11% Similarity=0.039 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYA 415 (877)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 415 (877)
.+..+...+.+.|++++|++.|++.. .++...|..+...|.+.|++++|++.|++..+.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34455666667777777777777664 3466677777777777777777777777766653 445566677777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 416 KLGRFEEALLVCKEMESSGIRKD----------------AVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (877)
Q Consensus 416 ~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (877)
..|++++|+..|++..+.. +.+ ...+..+...|.+.|++++|...|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777777776643 222 256666666777777777777777776654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-05 Score=83.75 Aligned_cols=166 Identities=10% Similarity=0.057 Sum_probs=127.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 002814 410 VLSIYAKLGRFEEALLVCKEMESSGI-RKD----AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS-PN----LLTYST 479 (877)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ 479 (877)
.+..+...|++++|..++++..+... .++ ...+..+...+...|++++|+..|+++.+.... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888999999999998876431 122 123445777788889999999999999884322 23 347899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----C-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 002814 480 LIDVYSKGGLYKEAMQIFREFKQ----A-GLKA-DVVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN-VVTYN 548 (877)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~m~~----~-g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 548 (877)
+...|...|++++|...|+++.+ . +..+ ...+|..+...|.+.|++++|+..+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999874 1 1111 2347888999999999999999999988752 32333 45888
Q ss_pred HHHHHHhhcCC-hhhhHHHHHHHhhhhh
Q 002814 549 SIIDAFGRSAT-TECTVDDVERDLGKQK 575 (877)
Q Consensus 549 ~li~~~~~~g~-~~~a~~~~~~~l~~~~ 575 (877)
.+..++.+.|+ +++|+..+++++....
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 99999999995 6999999999988654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.5e-06 Score=75.93 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
+.+......+.+.|++++|++.|+.+++.. |.+..++..+..+|.+.|++++|+..|+++++.... +..+|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD---PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHH
Confidence 345567788888999999999999988875 456678888888899999999999999998887543 6788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 002814 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV 269 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 269 (877)
+|...|++++|++.|++..+..+. +...+..+
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 899999999999999988874322 34444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=5.3e-05 Score=78.75 Aligned_cols=177 Identities=8% Similarity=0.038 Sum_probs=129.6
Q ss_pred HHHHHccCCHH-HHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHH
Q 002814 163 LRELGNRGEWS-KAIQCFAFAVKREERKNDQGKLASAMISILGRLGK----------VDLAKNIFETALNEGYGNTVYAF 231 (877)
Q Consensus 163 l~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~g~~~~~~~~ 231 (877)
+....+.|.++ +|+++++.++..+ |.+..+++.--.++...+. ++++..+++.++...+. +..+|
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~n---P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW 111 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTW 111 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHH
Confidence 33445567665 7999999999886 5666777766665555544 67889999999887554 78899
Q ss_pred HHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 232 SALISAYGRSGY--CQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVD-FKHVVEIFDDMLRNGVQPDRITFNSLLAV 308 (877)
Q Consensus 232 ~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 308 (877)
+.-..++.+.|+ +++++++++++.+...+ |..+|+.-.-.+...| . ++++++.+++++...+. |...|+.....
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~-~~~~eel~~~~~~I~~~p~-N~SAW~~R~~l 188 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAA-VAPAEELAFTDSLITRNFS-NYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 988888888884 88999999999986654 8888888887777777 5 68999999999987654 77777776666
Q ss_pred HHhC--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 002814 309 CSRG--------------GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG 347 (877)
Q Consensus 309 ~~~~--------------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 347 (877)
+.+. +.++++.+.++..+... +-|...|+-+-..+.+.
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 5554 34677777777777654 33666666555444443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=5.8e-06 Score=81.13 Aligned_cols=127 Identities=16% Similarity=0.048 Sum_probs=68.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK 451 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 451 (877)
+..+...+...|++++|++.|++.. .++...+..+...|.+.|++++|+..|++..+.. +.+...|..+..+|.+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555556666666666665542 3455556666666666666666666666655543 3445555556666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002814 452 QGKYDEVRRMFEQMKADCVSP---------------NLLTYSTLIDVYSKGGLYKEAMQIFREFKQA 503 (877)
Q Consensus 452 ~g~~~~A~~~~~~m~~~g~~p---------------~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 503 (877)
.|++++|...|++..+..... +...+..+..+|.+.|++++|.+.|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666655532110 1144444555555555555555555555443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.9e-06 Score=90.39 Aligned_cols=130 Identities=9% Similarity=-0.049 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CC--CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC-----CH
Q 002814 230 AFSALISAYGRSGYCQEAISVFNSMKRYN--L-KP--NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP-----DR 299 (877)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~-~p--~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p-----~~ 299 (877)
+|+.+...|.+.|++++|+..|++..+.- . .+ -..+++.+...|.. | ++++|++.|++.+...... ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g-~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L-DLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 34444444444444444444444433210 0 01 12344444444544 5 5555555555554321000 02
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002814 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHR----GIDQD-IFTYNTLLDAICKGAQMDLAFEIMAEMP 361 (877)
Q Consensus 300 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (877)
.++..+...|.+.|++++|+..|++.++. +..+. ...+..+..++...|++++|+..|++..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34555556666666666666666655542 11001 1244555555555666666666666654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=8.9e-07 Score=81.44 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=93.6
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCC
Q 002814 632 VFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 632 ~~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (877)
.|+++.. +.|+ ...+..+...+...|++++|...|+.+...+|.+..+..++...+ ..|++++|+..|+++++++|
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4555554 5674 445778899999999999999999999999999888877775554 68999999999999999999
Q ss_pred CcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 710 STASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 710 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
.+...|..++.+|...|++++|...+.++.+..
T Consensus 87 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 87 -XEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp -TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 778899999999999999999999999887654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.1e-05 Score=81.62 Aligned_cols=63 Identities=10% Similarity=-0.033 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhhcCChhhh-HHHHHHHhhh
Q 002814 511 LYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN-VVTYNSIIDAFGRSATTECT-VDDVERDLGK 573 (877)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a-~~~~~~~l~~ 573 (877)
+|..+...|.+.|++++|+..+++..+. +.... ..+|..+..+|.+.|+.++| ...+++++..
T Consensus 198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 4444555555555555555555554321 11111 33455555555555555555 4445555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.40 E-value=9.7e-06 Score=75.64 Aligned_cols=92 Identities=13% Similarity=0.073 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002814 409 TVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGG 488 (877)
Q Consensus 409 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 488 (877)
.+...+...|++++|...|++..+.. +.+..++..+...|...|++++|...|++..+.. +.+...|..+..+|...|
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 33334444444444444444443332 2234444444444444444444444444444331 123334444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 002814 489 LYKEAMQIFREFKQ 502 (877)
Q Consensus 489 ~~~~A~~~~~~m~~ 502 (877)
++++|...|+++.+
T Consensus 96 ~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 96 KFRAALRDYETVVK 109 (166)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 44444444444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1e-05 Score=75.52 Aligned_cols=128 Identities=15% Similarity=0.086 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 370 VTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY 449 (877)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 449 (877)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..+++..+.. +.+...|..+...|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345556666666777777777777666543 3356666667777777777777777777766654 44566777777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 002814 450 GKQGKYDEVRRMFEQMKADCVSPNLLTYST--LIDVYSKGGLYKEAMQIFREF 500 (877)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--li~~~~~~g~~~~A~~~~~~m 500 (877)
.+.|++++|...|+++.+.. +.+...+.. ++..+.+.|++++|.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 77777777777777776642 223344422 223355556666666666554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.1e-05 Score=81.65 Aligned_cols=169 Identities=13% Similarity=0.025 Sum_probs=130.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---CC
Q 002814 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR------VSYNTVLSIYAKLGRFEEALLVCKEMESSGIR---KD 438 (877)
Q Consensus 368 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---~~ 438 (877)
....+...+..+...|++++|++.+.+..+.... .. ..+..+...+...|++++|+..+++..+.... +.
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 3456667788899999999999999988876422 22 22445666778889999999999998864311 12
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---
Q 002814 439 --AVTYNALLGGYGKQGKYDEVRRMFEQMKADC-VSPN-----LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKA--- 507 (877)
Q Consensus 439 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--- 507 (877)
..+|+.+...|...|++++|...|+++.+.. ..++ ..++..+...|.+.|++++|...+++..+.....
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 4588999999999999999999999987320 1112 2588899999999999999999999998642110
Q ss_pred --CHHHHHHHHHHHHHcCChHHH-HHHHHHHHH
Q 002814 508 --DVVLYSALIDALCKNGLVESA-VSLLDEMTK 537 (877)
Q Consensus 508 --~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 537 (877)
-..+|..+..+|.+.|++++| ...|++...
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 167888999999999999999 777888764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.39 E-value=6.7e-06 Score=82.97 Aligned_cols=189 Identities=7% Similarity=-0.053 Sum_probs=129.2
Q ss_pred ccCCHHHHHHHHHHHHHccccCCChHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHc------------CCC---
Q 002814 168 NRGEWSKAIQCFAFAVKREERKNDQGKLASAM-------ISILGRLGKVDLAKNIFETALNE------------GYG--- 225 (877)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~------------g~~--- 225 (877)
+.+++.+|++.|..+...+ |.....|..+ ...+.+.++..++...+...+.. |.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d---P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD---ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC---hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 5788999999999999886 4555677777 56666666666666666665541 100
Q ss_pred -----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCC--
Q 002814 226 -----NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD-- 298 (877)
Q Consensus 226 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~-- 298 (877)
.-...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+ ++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~-r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAE-RWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTT-CHHHHHHHHTTGGGCS-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcC-CHHHHHHHHHHhhccC-CcccH
Confidence 002345566777888899999999998887643 44335555555677778 8888888887554431 111
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHchhC
Q 002814 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD--IFTYNTLLDAICKGAQMDLAFEIMAEMPAK 363 (877)
Q Consensus 299 ~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 363 (877)
...+..+..++...|++++|+..|++.......|. ......+..++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23566777888888888888888888875433243 345667777778888888888888888765
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.2e-05 Score=79.17 Aligned_cols=152 Identities=11% Similarity=0.037 Sum_probs=72.5
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHchhC------------CCC-----
Q 002814 311 RGGLWEAARNLFNEMVHRGIDQDIFTYNTL-------LDAICKGAQMDLAFEIMAEMPAK------------NIS----- 366 (877)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~------------g~~----- 366 (877)
..++.+.|.+.|.++.+.. +-....|+.+ ...+.+.++..+++..+..-... |+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777777777777764 2246667666 45555555555555555544431 100
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 002814 367 ---PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD--AVT 441 (877)
Q Consensus 367 ---pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~ 441 (877)
--...+-.+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...... .+. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 00112233444455555555555555554433 2332233334444555555555555554332211 000 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 442 YNALLGGYGKQGKYDEVRRMFEQMK 466 (877)
Q Consensus 442 ~~~li~~~~~~g~~~~A~~~~~~m~ 466 (877)
+..+..++.+.|++++|+..|++..
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEAN 198 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3444444444444444444444444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.5e-06 Score=78.46 Aligned_cols=96 Identities=15% Similarity=0.069 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
+.+..+...+.+.|++++|+..|+.++..+ |.+..++..+..+|...|++++|+..|+++++..+. +..+|..+..
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD---FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 344455566666666666666666666654 344556666666666666666666666666665433 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 002814 237 AYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~ 256 (877)
+|.+.|++++|+..|++..+
T Consensus 113 ~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666665
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.36 E-value=8.5e-07 Score=94.27 Aligned_cols=151 Identities=14% Similarity=0.057 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHH
Q 002814 170 GEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT--------------VYAFSALI 235 (877)
Q Consensus 170 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------~~~~~~li 235 (877)
+++++|++.|+.+.... +.....+..+...|.+.|++++|+..|++++....... ..+|..+.
T Consensus 127 ~~~~~A~~~~~~a~~~~---p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK---LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHHHH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 34455555555544432 23455677777778888888888888888777643321 45666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 315 (877)
.+|.+.|++++|+..|++..+.... +..+|..+..++...| ++++|+..|+++++.... +...+..+..++.+.|+.
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVN-DFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666654322 4556666666666666 666666666666654322 445555566666666666
Q ss_pred HHH-HHHHHHHH
Q 002814 316 EAA-RNLFNEMV 326 (877)
Q Consensus 316 ~~A-~~~~~~m~ 326 (877)
++| ..+|+.|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 655 33444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-06 Score=80.15 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=90.6
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCC
Q 002814 632 VFQKMHKLKIKPNV-VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 632 ~~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (877)
.|+++.. +.|+. ..+..+...+...|++++|...|+.+...+|.+..+...+...+ ..|++++|+..|+++++++|
T Consensus 6 ~l~~al~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 6 TLAMLRG--LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp ---CCTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHc--CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4444433 55643 45677888999999999999999999999999888877775554 78999999999999999999
Q ss_pred CcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 710 STASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 710 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
.+..+|..++.+|...|++++|...+.++....
T Consensus 84 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 84 -NEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp -TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 788899999999999999999999999887654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.36 E-value=3.4e-06 Score=87.07 Aligned_cols=95 Identities=6% Similarity=-0.086 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 002814 195 LASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274 (877)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 274 (877)
.+..+...+.+.|++++|+..|+++++.... +...|..+..+|.+.|++++|+..|++..+.... +...+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3444444555555555555555555544221 4445555555555555555555555555443221 3444555555555
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 002814 275 KGGVDFKHVVEIFDDMLR 292 (877)
Q Consensus 275 ~~g~~~~~a~~~~~~m~~ 292 (877)
..| ++++|+..|++.++
T Consensus 84 ~~g-~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EME-SYDEAIANLQRAYS 100 (281)
T ss_dssp HTT-CHHHHHHHHHHHHH
T ss_pred HcC-CHHHHHHHHHHHHH
Confidence 555 55555555555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-05 Score=70.27 Aligned_cols=15 Identities=47% Similarity=0.835 Sum_probs=5.4
Q ss_pred HHHcCCHHHHHHHHH
Q 002814 449 YGKQGKYDEVRRMFE 463 (877)
Q Consensus 449 ~~~~g~~~~A~~~~~ 463 (877)
|.+.|++++|...|+
T Consensus 87 ~~~~~~~~~A~~~~~ 101 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQ 101 (125)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHH
Confidence 333333333333333
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.8e-05 Score=69.46 Aligned_cols=114 Identities=22% Similarity=0.271 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 405 VSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVY 484 (877)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 484 (877)
..+..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++++|..+|+++.+.. +.+..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444455555555555555555554432 3344555555555555555555555555555432 22455555556666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 485 SKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK 521 (877)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 521 (877)
...|++++|...|+++.+... .+...+..+...+.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHh
Confidence 666666666666666555432 234444444444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.5e-06 Score=81.11 Aligned_cols=27 Identities=7% Similarity=-0.163 Sum_probs=13.8
Q ss_pred HHHHHHHhhcCChhhhHHHHHHHhhhh
Q 002814 548 NSIIDAFGRSATTECTVDDVERDLGKQ 574 (877)
Q Consensus 548 ~~li~~~~~~g~~~~a~~~~~~~l~~~ 574 (877)
..+..++...|++++|...+++++...
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 444445555555555555555555543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.4e-06 Score=74.89 Aligned_cols=98 Identities=6% Similarity=-0.111 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 002814 645 VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDML 723 (877)
Q Consensus 645 ~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 723 (877)
...+..++..+.+.|++++|.+.|+++++.+|.+..+..++...+ ..|++++|+..++++++++| .+...|..++.+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 345777888999999999999999999999998888777775554 68899999999999999999 6788999999999
Q ss_pred HhcCchhhHHHHHHHhhhhh
Q 002814 724 WHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 724 ~~~g~~~~A~~~~~~~~~~~ 743 (877)
...|++++|...+.++....
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999887654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.3e-06 Score=81.23 Aligned_cols=157 Identities=11% Similarity=0.051 Sum_probs=95.0
Q ss_pred HccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhc
Q 002814 167 GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE----GY-GNTVYAFSALISAYGRS 241 (877)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~ 241 (877)
...|++++|.+.++..... +.....++..+...+...|++++|...+++++.. +. .....++..+...|...
T Consensus 3 ~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH---PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHHHHHHHHTS---TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 3568888888855554332 2345667788888888888888888888887662 11 11345677777778888
Q ss_pred CCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHH
Q 002814 242 GYCQEAISVFNSMKRY----NLKP--NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGV-QPD----RITFNSLLAVCS 310 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~----g~~p--~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~ 310 (877)
|++++|++.|++..+. +-.+ ...++..+...+...| ++++|...+++.+...- ..+ ..++..+...+.
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 158 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG-DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ 158 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 8888888888776542 1011 1334566666666677 77777777776653210 011 123455556666
Q ss_pred hCCCHHHHHHHHHHHHH
Q 002814 311 RGGLWEAARNLFNEMVH 327 (877)
Q Consensus 311 ~~g~~~~A~~~~~~m~~ 327 (877)
..|++++|.+.+++..+
T Consensus 159 ~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 159 QEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHH
Confidence 66666666666665543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.3e-06 Score=80.20 Aligned_cols=122 Identities=6% Similarity=0.076 Sum_probs=89.1
Q ss_pred HccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH-
Q 002814 167 GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA-YGRSGYC- 244 (877)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~- 244 (877)
...|++++|+..|+.++... +.+..++..+..+|...|++++|...|+++.+.... +..++..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcc
Confidence 45677888888888887764 445667788888888888888888888888776433 67777777777 7778887
Q ss_pred -HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Q 002814 245 -QEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNG 294 (877)
Q Consensus 245 -~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g 294 (877)
++|+..|+++.+.... +...+..+...+...| ++++|...|+++++..
T Consensus 97 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSN-EITALMLLASDAFMQA-NYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhC
Confidence 8888888888765432 5667777777888888 8888888888887753
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=2.1e-05 Score=69.57 Aligned_cols=61 Identities=21% Similarity=0.104 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 475 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
..+..+...|...|++++|.+.+++..+.. +.+...+..+...|.+.|++++|...|++..
T Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 47 VYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333333333334444444444443333322 1123333334444444444444444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-05 Score=70.57 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 407 YNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMK 466 (877)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 466 (877)
+..+...+...|++++|+..+++..+.. +.+...+..+...|.+.|++++|...|++..
T Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 49 FCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333333333333333333333333322 2223333333334444444444444444333
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.5e-06 Score=78.19 Aligned_cols=99 Identities=12% Similarity=0.034 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHH
Q 002814 644 NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDM 722 (877)
Q Consensus 644 d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 722 (877)
+...+..+...|...|++++|.+.|+++++.+|.+..+..++...+ ..|++++|+..|+++++++| .+...|..++.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 4556888899999999999999999999999999888877775554 78999999999999999999 678999999999
Q ss_pred HHhcCchhhHHHHHHHhhhhh
Q 002814 723 LWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 723 ~~~~g~~~~A~~~~~~~~~~~ 743 (877)
|...|++++|...+.++.+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999887654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.3e-06 Score=78.23 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=73.2
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 002814 416 KLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDV-YSKGGLY--KE 492 (877)
Q Consensus 416 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g~~--~~ 492 (877)
..|++++|+..+++..+.. +.+...|..+...|...|++++|...|+++.+.. +.+...+..+..+ |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455666666666655543 4455666666666666666666666666665542 2245566666666 5566666 77
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002814 493 AMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (877)
Q Consensus 493 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (877)
|...|+++.+... .+...+..+...|...|++++|+..|+++.+.
T Consensus 100 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777666542 24566666777777777777777777777664
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.3e-06 Score=75.24 Aligned_cols=97 Identities=9% Similarity=0.052 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcc------hhHHHH
Q 002814 646 VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTA------SAFYNA 718 (877)
Q Consensus 646 ~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~ 718 (877)
..+..|++.+.+.|++++|++.|+++++.+|.+..+..++...+ ..|++++|++.++++++++|... ...|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34667899999999999999999999999999888877776555 78999999999999998877322 236778
Q ss_pred HHHHHHhcCchhhHHHHHHHhhhh
Q 002814 719 LTDMLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 719 l~~~~~~~g~~~~A~~~~~~~~~~ 742 (877)
++.++...|++++|.+.+.+++..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 899999999999999999988754
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.4e-05 Score=71.28 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK 451 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 451 (877)
|..+...|.+.|++++|++.|++..+.. +.+...+..+...|...|++++|+..+++..+.. +.+...+..+...|.+
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 3333333334444444444444333321 1233333333344444444444444444433322 2233344444444444
Q ss_pred cCCHHHHHHHHHHHH
Q 002814 452 QGKYDEVRRMFEQMK 466 (877)
Q Consensus 452 ~g~~~~A~~~~~~m~ 466 (877)
.|++++|.+.|++..
T Consensus 97 ~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 97 MKDYTKAMDVYQKAL 111 (133)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 444444444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=4e-06 Score=73.95 Aligned_cols=94 Identities=10% Similarity=-0.056 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhc
Q 002814 648 FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHF 726 (877)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 726 (877)
+..+...+.+.|++++|...|+++.+.+|.+..+...+...+ ..|++++|+..++++++++| .+...+..|+.+|...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 455677888999999999999999999999888877765544 68999999999999999999 6788999999999999
Q ss_pred CchhhHHHHHHHhhhh
Q 002814 727 GQKRGAQLVVLEGKRR 742 (877)
Q Consensus 727 g~~~~A~~~~~~~~~~ 742 (877)
|++++|...+.++++.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999887654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.5e-05 Score=71.02 Aligned_cols=118 Identities=12% Similarity=0.037 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 403 DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLID 482 (877)
Q Consensus 403 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 482 (877)
+...+..+...+.+.|++++|+..|++..+.. +.+..++..+...|...|++++|...|+++.+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34455555566666666666666666665543 3355556666666666666666666666655542 224555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002814 483 VYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNG 523 (877)
Q Consensus 483 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 523 (877)
+|.+.|++++|.+.|++..+... -+...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 66666666666666666655431 13344455555554443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.5e-05 Score=84.48 Aligned_cols=146 Identities=10% Similarity=-0.015 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHH
Q 002814 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMID 377 (877)
Q Consensus 298 ~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~ 377 (877)
+...+..+...|.+.|++++|+..|++.++....... -..+.+.++-. -....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------------~~~~~~~~~~~--------~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS-------------FSNEEAQKAQA--------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-------------CCSHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc-------------CChHHHHHHHH--------HHHHHHHHHHH
Confidence 4566777778888888888888888888775322110 00001100000 01344555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 002814 378 GYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE 457 (877)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 457 (877)
+|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++.++.. +.+..++..+...+.+.|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555543 3345555555555666666666666665555543 3345555555555555555555
Q ss_pred H-HHHHHHHH
Q 002814 458 V-RRMFEQMK 466 (877)
Q Consensus 458 A-~~~~~~m~ 466 (877)
| ..+|..|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5 33444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.9e-05 Score=68.75 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
+.+..+...+.+.|++++|+..|+.++... +.+..++..+..++.+.|++++|+..|+++++.... +..+|..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA---PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 345556677788888888888888888775 445667888888888888888888888888876543 5778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 002814 237 AYGRSGYCQEAISVFNSMKRY 257 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~ 257 (877)
++...|++++|+..|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 888888888888888887763
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.20 E-value=1e-05 Score=72.74 Aligned_cols=100 Identities=11% Similarity=-0.064 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHH
Q 002814 643 PNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTD 721 (877)
Q Consensus 643 Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 721 (877)
.+...+..++..+...|++++|...|+.+...+|.+..+..++...+ ..|++++|+..++++++.+| .+...|..++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 36778889999999999999999999999999998887777765544 68899999999999999999 67889999999
Q ss_pred HHHhcCchhhHHHHHHHhhhhh
Q 002814 722 MLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 722 ~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
+|...|++++|...+.++....
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 9999999999999999887654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=6e-06 Score=75.78 Aligned_cols=89 Identities=13% Similarity=0.015 Sum_probs=35.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
+...+.+.|++++|+..|+.++... +.+..++..+..+|...|++++|+..|++++...+. +..++..+..+|...
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVLD---HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHT
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence 3333444444444444444444332 222333333444444444444444444444333221 233333344444444
Q ss_pred CCHHHHHHHHHHH
Q 002814 242 GYCQEAISVFNSM 254 (877)
Q Consensus 242 g~~~~A~~~~~~m 254 (877)
|++++|+..|++.
T Consensus 103 g~~~~A~~~~~~a 115 (148)
T 2vgx_A 103 GELAEAESGLFLA 115 (148)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=5.1e-05 Score=86.24 Aligned_cols=103 Identities=10% Similarity=0.007 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCcchhHHHHHhhcc--------------
Q 002814 626 ILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCN-SFEDASMLLEELRLFDNQVYGVAHGLLMGY-------------- 689 (877)
Q Consensus 626 ~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~g-~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-------------- 689 (877)
+++++++++++.+ +.| |...|+.-..++.+.| .++++.++++++++.++.++.+++.....+
T Consensus 125 ~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 4556777777776 344 6667777777777888 889999999999999999888877652221
Q ss_pred -ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhh
Q 002814 690 -RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRG 731 (877)
Q Consensus 690 -~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 731 (877)
..+.+++|.+.++++++.+| .+...|+.+.+++.+.|+.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 13779999999999999999 788999999999999888655
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=3.8e-06 Score=81.56 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 371 TYSTMIDGYAKAGRLDDALNMFSEMKF 397 (877)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (877)
.+..+...+.+.|++++|+..|++...
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 66 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALD 66 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555666666666655554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.14 E-value=9.2e-06 Score=69.79 Aligned_cols=98 Identities=12% Similarity=0.031 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCc--chhHHHHHH
Q 002814 644 NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSST--ASAFYNALT 720 (877)
Q Consensus 644 d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 720 (877)
+...+..++..+...|++++|...|+++.+.++....+..++...+ ..|++++|+..++++++.+| . +..++..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHH
Confidence 3445777888999999999999999999998888777666665444 67899999999999999988 6 788999999
Q ss_pred HHHHhc-CchhhHHHHHHHhhhh
Q 002814 721 DMLWHF-GQKRGAQLVVLEGKRR 742 (877)
Q Consensus 721 ~~~~~~-g~~~~A~~~~~~~~~~ 742 (877)
.+|... |++++|.+.+.++...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 999999 9999999999887654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=8e-05 Score=64.35 Aligned_cols=98 Identities=14% Similarity=0.055 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
+.+..+...+...|++++|+..|+.++... +.+..++..+..++...|++++|...++++.+.... +..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 345556667777888888888888877764 344567777777788888888888888887776432 5677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC
Q 002814 237 AYGRSGYCQEAISVFNSMKRYN 258 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~g 258 (877)
++...|++++|.+.|++..+.+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHHcC
Confidence 7888888888888888777643
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.10 E-value=4.9e-05 Score=67.46 Aligned_cols=104 Identities=17% Similarity=0.145 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 002814 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL--KAD----VVLYSA 514 (877)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~ 514 (877)
++..+...|.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|++.|++.++... ..+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445555555555555555555555532 22455555555555666666666655555544211 011 124555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 002814 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTY 547 (877)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 547 (877)
+..++...|++++|++.|++.++. .||..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 566666666666666666666552 3454433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.09 E-value=2.5e-05 Score=71.03 Aligned_cols=96 Identities=14% Similarity=0.018 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
+.+..+...+.+.|++++|+..|+.++... |.+..++..+..++.+.|++++|...|++++...+. +...+..+..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD---HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 344456667777888888888888887774 455667777888888888888888888888776543 5667777788
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 002814 237 AYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~ 256 (877)
+|...|++++|+..|++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888887765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.7e-05 Score=72.20 Aligned_cols=95 Identities=9% Similarity=-0.035 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCc-------chh-----HHHHHhhcc-ccchHHHHHHHHHHHhhc-------
Q 002814 648 FSAILNACSRCNSFEDASMLLEELRLFDNQ-------VYG-----VAHGLLMGY-RDNIWVQALSLFDEVKLM------- 707 (877)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~-------~~~-----~~~~l~~~~-~~~~~~~A~~~~~~~~~~------- 707 (877)
+...+..+.+.|++++|.+.|+++++.+|. ++. +..+....+ ..|++++|+..+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 455667777888888888888888887777 332 444443333 567888888888888888
Q ss_pred CCCcchhHH----HHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 708 DSSTASAFY----NALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 708 ~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
+| .+...| +.++.+|..+|++++|...++++.+..
T Consensus 94 ~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 94 NQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp TS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99 678888 999999999999999999999887653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.06 E-value=5.2e-05 Score=70.77 Aligned_cols=98 Identities=18% Similarity=0.005 Sum_probs=81.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
.+.+..+...+.+.|++++|++.|+.++... +.+..++..+..+|.+.|++++|+..|+++++.... +..+|..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 4456667788888999999999999998875 455678888899999999999999999999887543 688888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 002814 236 SAYGRSGYCQEAISVFNSMKRY 257 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~ 257 (877)
.+|.+.|++++|+..|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999988764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00014 Score=62.73 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK 451 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 451 (877)
+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|.+
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3334444444444444444444443332 2233344444444444444444444444444332 2233444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 002814 452 QGKYDEVRRMFEQMKA 467 (877)
Q Consensus 452 ~g~~~~A~~~~~~m~~ 467 (877)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4444444444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=2.9e-05 Score=68.26 Aligned_cols=96 Identities=10% Similarity=-0.036 Sum_probs=81.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 237 (877)
.+..+...+.+.|++++|+..|+.++... |.+..++..+..++...|++++|+..|+++++..+. +..++..+..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 34556677888999999999999999885 556778888999999999999999999999887544 67888999999
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 002814 238 YGRSGYCQEAISVFNSMKRY 257 (877)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~ 257 (877)
|.+.|++++|+..|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998864
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=6.2e-05 Score=72.82 Aligned_cols=128 Identities=13% Similarity=0.002 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhCCCC-C--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 002814 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNIS-P--------------NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGI 400 (877)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p--------------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 400 (877)
.+..+...+.+.|++++|++.|++....... + ....|..+..+|.+.|++++|+..+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 3444445555555555555555554432111 0 02455555556666666666666666655542
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q 002814 401 GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVR-RMFEQM 465 (877)
Q Consensus 401 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m 465 (877)
+.+...+..+..+|...|++++|+..|++..+.. +.+..++..+...+...++.+++. ..|..|
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555666666666666666666655443 334555555555555555544444 333333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.01 E-value=7.2e-05 Score=64.00 Aligned_cols=99 Identities=16% Similarity=0.100 Sum_probs=70.5
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGN--TVYAFSA 233 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~ 233 (877)
++.+..+...+.+.|++++|+..|+.++... +.+..++..+..++...|++++|.+.|+++++.. +. +..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD---PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 4455556677777788888888888777764 3445567777777778888888888888777653 22 4667777
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhCC
Q 002814 234 LISAYGRS-GYCQEAISVFNSMKRYN 258 (877)
Q Consensus 234 li~~~~~~-g~~~~A~~~~~~m~~~g 258 (877)
+...+.+. |++++|++.|++.....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 77777777 88888888877776643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.01 E-value=8.7e-05 Score=66.52 Aligned_cols=98 Identities=15% Similarity=0.024 Sum_probs=70.2
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002814 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (877)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 234 (877)
++..+..+...+...|++++|+..|..++... +.+..++..+..++...|++++|...|+++++.... +..+|..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 34556667777777778888888887777764 344567777777777777777777777777776433 56677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 002814 235 ISAYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~ 256 (877)
..+|...|++++|+..|++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777777777777777664
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.99 E-value=7.2e-06 Score=91.15 Aligned_cols=90 Identities=9% Similarity=-0.066 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 002814 645 VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDML 723 (877)
Q Consensus 645 ~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 723 (877)
..+|..+..+|.+.|++++|+..|+++++.+|.+..+.+++...+ ..+++++|+..|+++++++| .+..++..|+.++
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 356888999999999999999999999999999888877776555 68999999999999999999 7788999999999
Q ss_pred HhcCchhhHHHH
Q 002814 724 WHFGQKRGAQLV 735 (877)
Q Consensus 724 ~~~g~~~~A~~~ 735 (877)
.+.|++++|.+-
T Consensus 396 ~~~~~~~~a~~~ 407 (457)
T 1kt0_A 396 KKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00018 Score=65.24 Aligned_cols=111 Identities=18% Similarity=0.135 Sum_probs=87.5
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCCh---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQ---GKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFS 232 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 232 (877)
...+..+...+...|++++|++.|+.++... +.+ ..++..+..++...|++++|+..++++++.... +..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 4556667788889999999999999999875 333 667888899999999999999999999886433 678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 002814 233 ALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVID 271 (877)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 271 (877)
.+..+|...|++++|+..|++..+.... +...+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHH
Confidence 8999999999999999999998874322 3444443333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.97 E-value=7.8e-05 Score=65.87 Aligned_cols=110 Identities=15% Similarity=0.191 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 002814 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL--KAD----VVLYSA 514 (877)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~ 514 (877)
.+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...|+++.+... ..+ ...|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44455555566666666666666655542 23455556666666666666666666666554321 111 556666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553 (877)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 553 (877)
+..+|.+.|++++|.+.|+++.+. .|+...+..+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 666777777777777777777663 3454444444433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00025 Score=62.60 Aligned_cols=98 Identities=11% Similarity=-0.059 Sum_probs=76.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 002814 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT---VYAFSALI 235 (877)
Q Consensus 159 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li 235 (877)
+..+...+.+.|++++|+..|+.++...+..+....++..+..++.+.|++++|...|+++++.... + ..++..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 4446667778899999999999988876433322257777888889999999999999998876433 3 66778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 002814 236 SAYGRSGYCQEAISVFNSMKRY 257 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~ 257 (877)
.+|.+.|++++|+..|+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888999999999999888764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.2e-05 Score=72.02 Aligned_cols=96 Identities=10% Similarity=-0.108 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhc------------------CCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhc
Q 002814 647 TFSAILNACSRCNSFEDASMLLEELRLF------------------DNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLM 707 (877)
Q Consensus 647 t~~~ll~a~~~~g~~~eA~~~~~~~~~~------------------~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~ 707 (877)
.+...+..+.+.|++++|...|++++.. ++....+..++...+ ..|++++|+..+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4667788889999999999999998876 444455555554444 688999999999999999
Q ss_pred CCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 708 DSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 708 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
+| .+...|..++.+|...|++++|...+.++....
T Consensus 93 ~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 93 EE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 99 778889999999999999999999999887654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.94 E-value=7.3e-05 Score=66.07 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 373 STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (877)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 430 (877)
..+...|...|++++|+..|++..... +.+...+..+...|...|++++|...++++
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 333344444444444444444433332 223333334444444444444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00026 Score=64.11 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=8.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 002814 408 NTVLSIYAKLGRFEEALLVCKEM 430 (877)
Q Consensus 408 ~~li~~~~~~g~~~~A~~~~~~m 430 (877)
..+..+|...|++++|...|++.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333333333333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00025 Score=78.00 Aligned_cols=165 Identities=11% Similarity=0.012 Sum_probs=76.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCC-CHHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKFLG-IGLDR----VSYNTVLSIYAKLGRFEEALLVCKEMES----SGIRK-DAVT 441 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~-~~~~ 441 (877)
+..+...|.+.|++++|.+.+.++...- ...+. .+.+.+...+...|+.++|..+++.... .+... -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4455666666666666666665543320 01111 1122222233344556666666555432 11111 1344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC--C--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HH
Q 002814 442 YNALLGGYGKQGKYDEVRRMFEQMKADC--V--SP-NLLTYSTLIDVYSKGGLYKEAMQIFREFKQA--GLKAD----VV 510 (877)
Q Consensus 442 ~~~li~~~~~~g~~~~A~~~~~~m~~~g--~--~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~ 510 (877)
+..+...|...|++++|..+++++...- . .+ ...++..++..|...|++++|..++++.... .+..+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 5555666666666666666665554311 0 01 1334555555566666666666555554321 01111 12
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 511 LYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
.+..+...+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444444455555555555554443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00014 Score=67.52 Aligned_cols=101 Identities=16% Similarity=0.057 Sum_probs=78.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcccc---------------CCChHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREER---------------KNDQGKLASAMISILGRLGKVDLAKNIFETAL 220 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 220 (877)
...+......+.+.|++++|+..|..++..-.. .+....++..+..+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666788889999999999999999876100 12345677888888888888888888888888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 002814 221 NEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY 257 (877)
Q Consensus 221 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 257 (877)
...+. +..+|..+..+|...|++++|+..|++..+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 76533 6778888888888888888888888888764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00038 Score=76.58 Aligned_cols=119 Identities=7% Similarity=-0.071 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCC---CCHHHHHHHHHHHHHcC
Q 002814 279 DFKHVVEIFDDMLR----NGVQPD-RITFNSLLAVCSRGGLWEAARNLFNEMVHR--GID---QDIFTYNTLLDAICKGA 348 (877)
Q Consensus 279 ~~~~a~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~~---~~~~~~~~li~~~~~~g 348 (877)
+++.+.+++++... .+..+. ..++..|...|...|++++|..+++++... +.. ....++..++..|...|
T Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (434)
T 4b4t_Q 110 SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLR 189 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhC
Confidence 45555555554432 121222 234555566666666666666666655432 110 11345666666666666
Q ss_pred CHHHHHHHHHHchhC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 349 QMDLAFEIMAEMPAK----NISPN--VVTYSTMIDGYAKAGRLDDALNMFSEMKF 397 (877)
Q Consensus 349 ~~~~A~~~~~~m~~~----g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (877)
++++|..++++.... +..+. ...+..+...+...|++++|...|.+..+
T Consensus 190 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 190 NLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 666666666554321 11111 23455556666667777777776666543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.2e-05 Score=70.20 Aligned_cols=83 Identities=11% Similarity=-0.002 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHhc---CCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHH
Q 002814 659 NSFEDASMLLEELRLF---DNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQL 734 (877)
Q Consensus 659 g~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 734 (877)
|++++|...|+++++. +|....+..++...+ ..|++++|+..|+++++.+| .+..++..++.+|...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHHH
Confidence 4444455555554444 233333333332222 34455555555555555555 455666666777777777777776
Q ss_pred HHHHhhhh
Q 002814 735 VVLEGKRR 742 (877)
Q Consensus 735 ~~~~~~~~ 742 (877)
.+.++...
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.86 E-value=1.8e-05 Score=87.89 Aligned_cols=117 Identities=15% Similarity=0.069 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHH
Q 002814 171 EWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT--------------VYAFSALIS 236 (877)
Q Consensus 171 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------~~~~~~li~ 236 (877)
++++|++.|+...... +.....+..+...|.+.|++++|...|+++++...... ..+|..+..
T Consensus 249 ~~~~A~~~~~~~~~~~---~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK---LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEECCCCGGGSCHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444332 23344566677777777777777777777766432211 344444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 002814 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR 292 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~ 292 (877)
+|.+.|++++|+..|++..+.... +..+|..+..+|...| ++++|+..|+++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g-~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMN-EFESAKGDFEKVLE 379 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHcc-CHHHHHHHHHHHHH
Confidence 444445555555544444443211 3444444444444444 44444444444444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00034 Score=79.39 Aligned_cols=177 Identities=8% Similarity=0.044 Sum_probs=132.2
Q ss_pred HHccCCH-HHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002814 166 LGNRGEW-SKAIQCFAFAVKREERKNDQGKLASAMISILGRLGK----------VDLAKNIFETALNEGYGNTVYAFSAL 234 (877)
Q Consensus 166 ~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~g~~~~~~~~~~l 234 (877)
+.+.|++ ++|++.++.++..+ |.+..+|+.-..++.+.|+ ++++.+.++.+++..++ +..+|+.-
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~n---P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR 113 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHR 113 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3344444 67899999999886 5667788888888888877 89999999999987654 78899999
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 002814 235 ISAYGRSG--YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG 312 (877)
Q Consensus 235 i~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 312 (877)
..++.+.| +++++++.++++.+...+ |..+|+.-.-++.+.|..++++++.++++++..+. |...|+....++.+.
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l 191 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhh
Confidence 88899999 679999999999987655 88888888777777764678889998888877554 677777776666553
Q ss_pred --------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 002814 313 --------------GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQ 349 (877)
Q Consensus 313 --------------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 349 (877)
+.++++.+.+++++... +-|...|+.+-..+.+.++
T Consensus 192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 192 HPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 34566666666666553 2255566665555555554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.85 E-value=3e-05 Score=86.45 Aligned_cols=112 Identities=9% Similarity=-0.036 Sum_probs=94.1
Q ss_pred hHhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHH
Q 002814 623 RQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSL 700 (877)
Q Consensus 623 ~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~ 700 (877)
.+++++|++.|++.++ +.| +..++..+..+|.+.|++++|.+.|+++.+.+|.+..+..++...+ ..|++++|++.
T Consensus 19 ~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~ 96 (477)
T 1wao_1 19 AKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD 96 (477)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3588899999999987 456 5778999999999999999999999999999999888877776555 68999999999
Q ss_pred HHHHhhcCCCcchhHHHHHHHH--HHhcCchhhHHHHHH
Q 002814 701 FDEVKLMDSSTASAFYNALTDM--LWHFGQKRGAQLVVL 737 (877)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 737 (877)
++++++.+| .+...+..++.+ +.+.|++++|.+++.
T Consensus 97 ~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 97 YETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999 667788888888 888999999999887
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00019 Score=65.19 Aligned_cols=99 Identities=15% Similarity=0.021 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCC----h-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKND----Q-----GKLASAMISILGRLGKVDLAKNIFETALNE----- 222 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 222 (877)
+.+......+.+.|++++|++.|+.+++..+..+. + ..+|..+..++.+.|++++|+..|+++++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34555677788899999999999999988743211 1 226777777777888888888777777765
Q ss_pred --CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 002814 223 --GYGNTVYAF----SALISAYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 223 --g~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 256 (877)
.+. +..+| .....++...|++++|+..|++..+
T Consensus 92 e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 432 45566 6677777777777777777777654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.84 E-value=7.9e-05 Score=68.69 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HH
Q 002814 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLK-AD----VVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN-VV 545 (877)
Q Consensus 476 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~ 545 (877)
++..+...|...|++++|.+.+++..+.... .+ ...+..+...+...|++++|...+++..+. +..+. ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4444555555555555555555554331100 01 334555566666666666666666665432 11111 23
Q ss_pred HHHHHHHHHhhcCChhhhHHHHHHHhhhh
Q 002814 546 TYNSIIDAFGRSATTECTVDDVERDLGKQ 574 (877)
Q Consensus 546 ~~~~li~~~~~~g~~~~a~~~~~~~l~~~ 574 (877)
++..+...+...|++++|++.++++++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 55566666777777777777776666543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00011 Score=65.12 Aligned_cols=94 Identities=14% Similarity=0.018 Sum_probs=73.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCcch---hHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcc---hhHHHHHHH
Q 002814 649 SAILNACSRCNSFEDASMLLEELRLFDNQVY---GVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTA---SAFYNALTD 721 (877)
Q Consensus 649 ~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~---~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 721 (877)
..+...+...|++++|.+.|+.+...+|.+. .+...+...+ ..|++++|+..++++++..| .+ ...+..++.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHH
Confidence 3456677788999999999999888777665 3444443333 67899999999999999888 45 667888999
Q ss_pred HHHhcCchhhHHHHHHHhhhhh
Q 002814 722 MLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 722 ~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
+|...|++++|...+.++....
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999998877543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.81 E-value=3.8e-05 Score=67.01 Aligned_cols=89 Identities=10% Similarity=0.044 Sum_probs=70.2
Q ss_pred ccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002814 168 NRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEA 247 (877)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 247 (877)
..|++++|+..|+.++..+...+.+..++..+..+|...|++++|+..|+++++..+. +..++..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 3578899999999998873222455678888999999999999999999999887544 688888899999999999999
Q ss_pred HHHHHHHHhC
Q 002814 248 ISVFNSMKRY 257 (877)
Q Consensus 248 ~~~~~~m~~~ 257 (877)
+..|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00014 Score=67.03 Aligned_cols=97 Identities=12% Similarity=0.116 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHH
Q 002814 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCV-SPN----LLTYSTLIDVYSKGGLYKEAMQIFREFKQA----GLK-ADVV 510 (877)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~ 510 (877)
++..+...|...|++++|...+++..+... ..+ ...+..+...|...|++++|.+.+++..+. +.. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 444555555556666666665555443210 001 334556666666777777777776665532 100 1134
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 511 LYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
.+..+...|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566777788888888888888887764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=6.8e-05 Score=68.01 Aligned_cols=88 Identities=14% Similarity=0.047 Sum_probs=66.3
Q ss_pred HhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCH----------HHHHHHHHHHHhcCCcchhHHHHHhhccc-c
Q 002814 624 QEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSF----------EDASMLLEELRLFDNQVYGVAHGLLMGYR-D 691 (877)
Q Consensus 624 ~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~----------~eA~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 691 (877)
+.+++|++.+++..+ +.| |...|..++.++...|++ ++|+..|+++++++|+...+.+++...+. .
T Consensus 16 ~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 478889999999887 567 666788888888877664 58888888888888887777777655542 2
Q ss_pred -----------chHHHHHHHHHHHhhcCCCcchh
Q 002814 692 -----------NIWVQALSLFDEVKLMDSSTASA 714 (877)
Q Consensus 692 -----------~~~~~A~~~~~~~~~~~~~~~~~ 714 (877)
+++++|++.|+++++++| .+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P-~~~~ 126 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQP-DNTH 126 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCT-TCHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCC-CCHH
Confidence 478888888888888888 4443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.69 E-value=7.1e-05 Score=83.44 Aligned_cols=87 Identities=9% Similarity=0.033 Sum_probs=52.7
Q ss_pred HHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 002814 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQ 245 (877)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 245 (877)
+.+.|++++|++.|+++++.. +.+..++..+..+|.+.|++++|++.++++++.... +..+|..+..+|.+.|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 445666666666666666653 334556666666666666666666666666665322 4556666666666666666
Q ss_pred HHHHHHHHHHh
Q 002814 246 EAISVFNSMKR 256 (877)
Q Consensus 246 ~A~~~~~~m~~ 256 (877)
+|++.|++..+
T Consensus 92 eA~~~~~~al~ 102 (477)
T 1wao_1 92 AALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00032 Score=75.21 Aligned_cols=98 Identities=10% Similarity=0.023 Sum_probs=52.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcccc-------------CCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREER-------------KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGY 224 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 224 (877)
.+..+...+.+.|++++|++.|+.+++.... .+....++..+..+|.+.|++++|++.++++++...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 3555667777788888888888877762100 112233444455555555555555555555554332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002814 225 GNTVYAFSALISAYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 225 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 256 (877)
. +..+|..+..+|.+.|++++|++.|++..+
T Consensus 305 ~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 305 S-NTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1 344555555555555555555555555444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00011 Score=62.83 Aligned_cols=90 Identities=14% Similarity=-0.008 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcc------hhHH
Q 002814 644 NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTA------SAFY 716 (877)
Q Consensus 644 d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~------~~~~ 716 (877)
+...+..++..+...|++++|.+.|+++.+.+|.+..+..++...+ ..|++++|++.++++++.+| .+ ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS-TAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS-STTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CccHHHHHHHHH
Confidence 4556788899999999999999999999999998887777765554 78899999999999999998 44 5566
Q ss_pred HHHHHHHHhcCchhhHHH
Q 002814 717 NALTDMLWHFGQKRGAQL 734 (877)
Q Consensus 717 ~~l~~~~~~~g~~~~A~~ 734 (877)
..++.++...|+.++|..
T Consensus 82 ~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhHhhhHh
Confidence 667777777776665543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00026 Score=78.32 Aligned_cols=140 Identities=8% Similarity=-0.027 Sum_probs=94.8
Q ss_pred HHHHcCChHHHHHHHHHHHHC---CCC---CCH-HHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchh
Q 002814 518 ALCKNGLVESAVSLLDEMTKE---GIR---PNV-VTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKD 590 (877)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~---g~~---p~~-~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 590 (877)
.+...|++++|+.++++.++. -+. |+. .+++.|..+|...|++++|..+++++++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~------------------ 379 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD------------------ 379 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------
Confidence 345678888888888877642 122 333 3788999999999999999877655443
Q ss_pred hhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHH
Q 002814 591 VQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNV-VTFSAILNACSRCNSFEDASMLLE 669 (877)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~ 669 (877)
++++..-. -.|+. .+++.|...|...|++++|..+++
T Consensus 380 -----------------------------------------i~~~~lG~-~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~ 417 (490)
T 3n71_A 380 -----------------------------------------GYMKLYHH-NNAQLGMAVMRAGLTNWHAGHIEVGHGMIC 417 (490)
T ss_dssp -----------------------------------------HHHHHSCT-TCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------------------------------HHHHHcCC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 43333211 23443 358899999999999999999987
Q ss_pred HHHhcCCcchhHHHHHhhccccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 670 ELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 670 ~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
++.+ ++++..-.+........+.|..++..+|++++|..++.+++++.
T Consensus 418 ~Al~--------------------------i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 418 KAYA--------------------------ILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHH--------------------------HHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--------------------------HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7652 22222211111224455677778888899999999888887654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00021 Score=75.76 Aligned_cols=147 Identities=14% Similarity=0.085 Sum_probs=61.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 237 (877)
.+..+...+.+.|++++|+..|..++... +.+. .+...|+.+++...+. ..+|..+..+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~--------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDF--------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHH--------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccch--------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 34556677777888888888888887763 2221 0111222222221110 1245555666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhCCCHH
Q 002814 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAV-CSRGGLWE 316 (877)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~ 316 (877)
|.+.|++++|+..|++..+.... +..+|..+..++...| ++++|+..|+++++.... +...+..|... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g-~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELG-QMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTT-CHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666553221 4555666666666666 666666666665543211 22333333333 22334455
Q ss_pred HHHHHHHHHHHc
Q 002814 317 AARNLFNEMVHR 328 (877)
Q Consensus 317 ~A~~~~~~m~~~ 328 (877)
.+..+|..|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 556666665543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00055 Score=73.34 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 405 VSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (877)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (877)
..|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|.+.|++++|+..|++.++
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444445555555555555555554433 23444444455555555555555555554444
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0019 Score=57.99 Aligned_cols=110 Identities=12% Similarity=-0.058 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 002814 419 RFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAM 494 (877)
Q Consensus 419 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~ 494 (877)
++++|+..|++..+.| .++.. |...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4455555555555554 22222 4444555555555555565555543 45555555555555 45566666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 002814 495 QIFREFKQAGLKADVVLYSALIDALCK----NGLVESAVSLLDEMTKEG 539 (877)
Q Consensus 495 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 539 (877)
+.|++..+.| +...+..|...|.. .++.++|++.|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665543 45555555555555 556666666666665544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.58 E-value=7e-05 Score=79.43 Aligned_cols=115 Identities=5% Similarity=-0.106 Sum_probs=66.0
Q ss_pred HhHHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHH
Q 002814 624 QEILCILGVFQKMHKLKIKPNVV------------------TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGL 685 (877)
Q Consensus 624 ~~~~~A~~~~~~m~~~g~~Pd~~------------------t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l 685 (877)
+++++|+..|++.+. +.|+.. +|..+..+|.+.|++++|...|+++++.+|.+..+.+++
T Consensus 193 g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 270 (338)
T 2if4_A 193 EKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRR 270 (338)
T ss_dssp SCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 467889999998876 456554 677888888899999999999999988888887777776
Q ss_pred hhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHH-hcCchhhHHHHHHHhhh
Q 002814 686 LMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLW-HFGQKRGAQLVVLEGKR 741 (877)
Q Consensus 686 ~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 741 (877)
...+ ..|++++|+..|+++++++| .+..++..|..+.. ..++.+++..++.++..
T Consensus 271 g~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 271 GKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5554 67889999999999988888 66777777777643 34556666666655543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00014 Score=62.97 Aligned_cols=79 Identities=19% Similarity=0.113 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhh
Q 002814 663 DASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (877)
Q Consensus 663 eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (877)
+|.+.|+++.+.+|.+..+..++...+ ..|++++|+..++++++.+| .+...|..++.+|...|++++|...+.++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555544444443332 45556666666666666777 5677788889999999999999988887765
Q ss_pred h
Q 002814 742 R 742 (877)
Q Consensus 742 ~ 742 (877)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00089 Score=60.16 Aligned_cols=111 Identities=9% Similarity=-0.043 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 002814 383 GRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK----QGKYDEV 458 (877)
Q Consensus 383 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A 458 (877)
+++++|++.|++..+.| .++.. |...|...+.+++|++.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45677777777777776 33333 5566666667777888887777754 66777777777777 6788888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 002814 459 RRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAG 504 (877)
Q Consensus 459 ~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g 504 (877)
.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888877765 66777777777777 678888888888887765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00017 Score=65.34 Aligned_cols=100 Identities=16% Similarity=0.031 Sum_probs=78.3
Q ss_pred HccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 167 GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKV----------DLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
.+.+++++|++.|+.+++.+ |.+...+..+..++...+++ ++|+..|+++++..+. +..+|..+..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~---P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 44567899999999999886 56677888888888888765 5999999999987654 6788999999
Q ss_pred HHHhcC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 002814 237 AYGRSG-----------YCQEAISVFNSMKRYNLKPNLVTYNAVIDA 272 (877)
Q Consensus 237 ~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 272 (877)
+|...| ++++|++.|++..+ +.|+...|...+..
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 998775 78888888888887 35666666555543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00041 Score=56.71 Aligned_cols=82 Identities=12% Similarity=0.130 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 002814 645 VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDML 723 (877)
Q Consensus 645 ~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 723 (877)
...+..+...+...|++++|.+.|+++...+|.+..+..++...+ ..|++++|+..++++++.+| .+...+..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 456778888999999999999999999988888776666664444 67899999999999999988 6778888888887
Q ss_pred HhcC
Q 002814 724 WHFG 727 (877)
Q Consensus 724 ~~~g 727 (877)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00055 Score=75.73 Aligned_cols=91 Identities=9% Similarity=0.007 Sum_probs=55.4
Q ss_pred HHHccCCHHHHHHHHHHHHHc-----cccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCC-C-CHHHHH
Q 002814 165 ELGNRGEWSKAIQCFAFAVKR-----EERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE-----GYG-N-TVYAFS 232 (877)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~-~-~~~~~~ 232 (877)
.+..+|++++|+.++++++.. +...+....+++.|+.+|...|++++|+.+++++++. |.. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355677777777777776643 2223334556677777777777777777777666542 211 1 234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 002814 233 ALISAYGRSGYCQEAISVFNSMK 255 (877)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~ 255 (877)
.|...|...|++++|+.+|++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666666666666666554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00059 Score=58.17 Aligned_cols=91 Identities=20% Similarity=0.161 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-------HH
Q 002814 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-------VV 545 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 545 (877)
+...|..+...+.+.|++++|.+.|++.++... .+...|..+..+|.+.|++++|+..|++.++. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 455677777788888888888888888877642 36777888888888888888888888888764 344 44
Q ss_pred HHHHHHHHHhhcCChhhhHHH
Q 002814 546 TYNSIIDAFGRSATTECTVDD 566 (877)
Q Consensus 546 ~~~~li~~~~~~g~~~~a~~~ 566 (877)
.+..+..++...|+.++|+..
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhH
Confidence 556666666677776666543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00068 Score=56.93 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=39.5
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
..|++++|+..|+++++.+| .+..+|..++.+|...|++++|...+.++.+..
T Consensus 19 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 19 KHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 34555555556666666777 567788889999999999999999988877653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0016 Score=56.18 Aligned_cols=79 Identities=14% Similarity=0.005 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002814 174 KAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNS 253 (877)
Q Consensus 174 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 253 (877)
.|++.|+.++... +.+..++..+..+|...|++++|+..|++++..... +..+|..+..+|...|++++|+..|++
T Consensus 3 ~a~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG---TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566677776654 445567777777777778888888888777766432 566777777777777777777777777
Q ss_pred HHh
Q 002814 254 MKR 256 (877)
Q Consensus 254 m~~ 256 (877)
..+
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0037 Score=50.71 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=45.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 237 (877)
.+..+...+.+.|++++|+..|+.++... +.+..++..+..++.+.|++++|...|+++.+..+. +..++..+..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 34445555666666666666666666553 333445566666666666666666666666654322 44555555554
Q ss_pred HHh
Q 002814 238 YGR 240 (877)
Q Consensus 238 ~~~ 240 (877)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.015 Score=60.44 Aligned_cols=49 Identities=6% Similarity=-0.096 Sum_probs=28.7
Q ss_pred cCCChhhHHHHHHHHHc--c---CCHHHHHHHHHHHHHccccCCChHHHHHHHHHHH
Q 002814 152 KLCGADDYTFLLRELGN--R---GEWSKAIQCFAFAVKREERKNDQGKLASAMISIL 203 (877)
Q Consensus 152 ~~~~~~~~~~ll~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (877)
.+.+++.|...+++... . ..+.+|+.+|+++++.. |....++..+..++
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD---P~~a~A~A~la~a~ 243 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS---PEFTYARAEKALVD 243 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHH
Confidence 44566777666655432 2 23467888888888775 44445555444444
|
| >3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0012 Score=52.68 Aligned_cols=78 Identities=24% Similarity=0.238 Sum_probs=50.7
Q ss_pred cchhhccchHHHHHHHHHHHHHHHHhhhccCCCCCceeEEeeccccccccCchhhHHHHHHHHhcCCCCcccccCCCceE
Q 002814 753 CLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAPFWVANCNLGRF 832 (877)
Q Consensus 753 ~~dl~~~s~g~a~~~~~~w~~~~~~~~~~~~~~p~~~~i~~g~g~h~~~~~~~~~~~~i~~~l~~l~~pf~~~~~~~g~~ 832 (877)
.+|||.+++.+|...+..++.+......... -...+.|+||.|.||. .|-..++..|...|++-. +.+...|.|.+
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~-g~~~v~II~GkG~hS~-~g~~~Lk~~V~~~L~~~~--~~~~e~n~G~l 77 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNG-GKPYLSVITGRGNHSQ-GGVARIKPAVIKYLISHS--FRFSEIKPGCL 77 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCC----------CHHHHHHHHHHHTT--CCEEEEETTEE
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhhccC-CceEEEEEECCCCCCC-CCcchHHHHHHHHHHhCC--CceeeCCCEEE
Confidence 4899999999999999988876543222111 1346889999999973 233458899999999855 55555688887
Q ss_pred Ee
Q 002814 833 IS 834 (877)
Q Consensus 833 ~~ 834 (877)
..
T Consensus 78 ~V 79 (82)
T 3fau_A 78 KV 79 (82)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.068 Score=53.25 Aligned_cols=106 Identities=8% Similarity=0.044 Sum_probs=76.9
Q ss_pred HhHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcC-----CCHHHHHHHHHHHHhcCCcc-hhHHHHHhhcc-c-cc
Q 002814 624 QEILCILGVFQKMHKLKIKPN---VVTFSAILNACSRC-----NSFEDASMLLEELRLFDNQV-YGVAHGLLMGY-R-DN 692 (877)
Q Consensus 624 ~~~~~A~~~~~~m~~~g~~Pd---~~t~~~ll~a~~~~-----g~~~eA~~~~~~~~~~~~~~-~~~~~~l~~~~-~-~~ 692 (877)
....+|..++++.++ +.|+ ...|..|+..|.+. |+.++|.++|+++++++|+. ..+.+.+...+ + .+
T Consensus 177 ~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 177 DTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 466778888999888 6787 45688888888884 99999999999999999964 55554443333 3 58
Q ss_pred hHHHHHHHHHHHhhcCCC--cchhHHHHHHHHHHhcCchhhHHHHHHHh
Q 002814 693 IWVQALSLFDEVKLMDSS--TASAFYNALTDMLWHFGQKRGAQLVVLEG 739 (877)
Q Consensus 693 ~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 739 (877)
+.++|.+.+++++..+|. +.... ...+..++|..++.+.
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~l--------an~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKL--------LVILSQKRARWLKAHV 295 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHH--------HHHHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhH--------HHHHHHHHHHHHHHHh
Confidence 899999999999998885 33332 2334455666665543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0045 Score=67.24 Aligned_cols=91 Identities=8% Similarity=0.079 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHH---CCCCCC---H-HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhccccchHHHH
Q 002814 625 EILCILGVFQKMHK---LKIKPN---V-VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQA 697 (877)
Q Consensus 625 ~~~~A~~~~~~m~~---~g~~Pd---~-~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A 697 (877)
++++|+.++++.++ .-+.|+ . .+++.|..+|...|++++|..+++++++
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~------------------------ 368 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK------------------------ 368 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH------------------------
Confidence 56778888877653 223343 2 4689999999999999999999987762
Q ss_pred HHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhh
Q 002814 698 LSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (877)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (877)
++++..--+...-...|+.|+.+|+.+|++++|..++.++++
T Consensus 369 --i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 369 --PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp --HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 222222222213456799999999999999999999988764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0068 Score=50.60 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002814 195 LASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSM 254 (877)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 254 (877)
++..+..+|.+.|++++|+..|+++++..+. +..+|..+..+|.+.|++++|++.|++.
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444444443222 3334444444444444444444444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.007 Score=65.73 Aligned_cols=89 Identities=6% Similarity=-0.068 Sum_probs=58.5
Q ss_pred ccCCHHHHHHHHHHHHHc-----cccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCC-HHHHHHHH
Q 002814 168 NRGEWSKAIQCFAFAVKR-----EERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE-----GY-GNT-VYAFSALI 235 (877)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~-~~~-~~~~~~li 235 (877)
..|+|++|+.++++++.. +...+....+++.+..+|...|++++|+.++++++.. |. .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356778888888777653 2223344566777777788888888887777777542 21 122 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 002814 236 SAYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~ 256 (877)
..|...|++++|+.+|++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 777777777777777776653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.17 Score=60.29 Aligned_cols=102 Identities=13% Similarity=0.175 Sum_probs=60.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc
Q 002814 303 NSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA 382 (877)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 382 (877)
..++..+.+.|..++|.++.+... .-.......|++++|.++.+.+. +...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~~------~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDES------AEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTCC------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhhC------cHhHHHHHHHHHHHc
Confidence 566666777777777776552211 11334456777888877766542 567777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 383 GRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEME 431 (877)
Q Consensus 383 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (877)
|+++.|.+.|.++.. |..+...|...|+.+...++-+...
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777776532 2334444444555554444433333
|
| >2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.013 Score=48.35 Aligned_cols=78 Identities=24% Similarity=0.239 Sum_probs=54.9
Q ss_pred ccchhhccchHHHHHHHHHHHHHHHHhhhccCCCCCceeEEeeccccccccCchhhHHHHHHHHhcCCCCcccccCCCce
Q 002814 752 SCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAPFWVANCNLGR 831 (877)
Q Consensus 752 ~~~dl~~~s~g~a~~~~~~w~~~~~~~~~~~~~~p~~~~i~~g~g~h~~~~~~~~~~~~i~~~l~~l~~pf~~~~~~~g~ 831 (877)
..+|||.+.+.+|...+..++.+......... --.++.|+||.|.||. .+...+++.|...|++....| ...|.|.
T Consensus 9 ~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~-g~~~v~IIhGkG~hS~-~g~~~Lk~~V~~~L~~~~~~~--~egg~Ga 84 (96)
T 2d9i_A 9 NVLDLHGLHVDEALEHLMRVLEKKTEEFKQNG-GKPYLSVITGRGNHSQ-GGVARIKPAVIKYLISHSFRF--SEIKPGC 84 (96)
T ss_dssp CEEECTTSCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEEECCCSGGGT-TCTTCHHHHHHHHHHHTTCCE--ECCSTTC
T ss_pred CeEECCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEEECcCCCCC-CCcchHHHHHHHHHhhCCCcc--ccCCCcE
Confidence 36999999999999999999877653222111 1346899999999984 234678899999999866433 2334444
Q ss_pred EE
Q 002814 832 FI 833 (877)
Q Consensus 832 ~~ 833 (877)
++
T Consensus 85 ~~ 86 (96)
T 2d9i_A 85 LK 86 (96)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.014 Score=63.52 Aligned_cols=93 Identities=11% Similarity=0.021 Sum_probs=46.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc-----cccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CC-CHHH
Q 002814 163 LRELGNRGEWSKAIQCFAFAVKR-----EERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE-----GY-GN-TVYA 230 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~-~~-~~~~ 230 (877)
+..+.+.|++++|++++++++.. +...+....+++.++.+|...|++++|+.++++++.. |. .| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34444556666666666655532 1112223344555555565666666666555555431 11 11 1334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 002814 231 FSALISAYGRSGYCQEAISVFNSMK 255 (877)
Q Consensus 231 ~~~li~~~~~~g~~~~A~~~~~~m~ 255 (877)
++.|...|...|++++|+.+|++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5555555555555555555555543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0092 Score=49.42 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=41.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHccccCCChHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 002814 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGK-LASAMISILGRLGKVDLAKNIFETALNEGY 224 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 224 (877)
...+.+.|++++|++.|+.++... +.+.. ++..+..+|...|++++|.+.|+++++...
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE---PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC---SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 445566777777777777777764 34455 667777777777777777777777776643
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.017 Score=47.74 Aligned_cols=58 Identities=16% Similarity=0.132 Sum_probs=30.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCcchh-HHHHHhhcc-ccchHHHHHHHHHHHhhcCC
Q 002814 652 LNACSRCNSFEDASMLLEELRLFDNQVYG-VAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 652 l~a~~~~g~~~eA~~~~~~~~~~~~~~~~-~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (877)
+..+...|++++|.+.|+++.+.+|.+.. +...+...+ ..|++++|++.|+++++.+|
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 33444555566666666655555555444 433332222 44555566666666655555
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.064 Score=64.02 Aligned_cols=45 Identities=13% Similarity=0.122 Sum_probs=21.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM 465 (877)
Q Consensus 415 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 465 (877)
...|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555443221 23445555555555555555555555544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.08 Score=55.06 Aligned_cols=70 Identities=16% Similarity=0.051 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 002814 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVT 546 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 546 (877)
+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|++... +.|...|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t 345 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcCh
Confidence 44555555444444455555555555555543 4444454555555555555555555555554 2344443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.042 Score=49.13 Aligned_cols=84 Identities=18% Similarity=0.088 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHhcC-C-cchhHHHHHhhcc-ccchHHHHHH
Q 002814 626 ILCILGVFQKMHKLKIKPNVVTFSAILNACSRCN---SFEDASMLLEELRLFD-N-QVYGVAHGLLMGY-RDNIWVQALS 699 (877)
Q Consensus 626 ~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g---~~~eA~~~~~~~~~~~-~-~~~~~~~~l~~~~-~~~~~~~A~~ 699 (877)
...+.+-|.+....|. ++..+.-.+..++.+.+ ++++|..+|++..+.+ | ..-..++++..++ +.+++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3345556666666554 57777667888889888 6779999999988777 5 4455666665554 8899999999
Q ss_pred HHHHHhhcCCC
Q 002814 700 LFDEVKLMDSS 710 (877)
Q Consensus 700 ~~~~~~~~~~~ 710 (877)
+++++++.+|.
T Consensus 93 y~~~lL~ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHhcCCC
Confidence 99999999993
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.084 Score=57.25 Aligned_cols=89 Identities=15% Similarity=0.057 Sum_probs=45.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHH
Q 002814 448 GYGKQGKYDEVRRMFEQMKADC---VSPN----LLTYSTLIDVYSKGGLYKEAMQIFREFKQA-----GL-KAD-VVLYS 513 (877)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~g---~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~~~~ 513 (877)
.+.+.|++++|+.++++.++.. +.++ ..+++.|...|...|++++|..+++++++. |. .|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445566666666666665431 1111 345555666666666666666666555431 11 111 23455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 002814 514 ALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
.|...|...|++++|+.+|++..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 55555555555555555555554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.043 Score=49.07 Aligned_cols=84 Identities=7% Similarity=-0.027 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHhhcc-c---cchHHHHHHHHHHHhhcC-CCcchhHHHHHHHHHHhcCchhhHHH
Q 002814 660 SFEDASMLLEELRLFDNQVYGVAHGLLMGY-R---DNIWVQALSLFDEVKLMD-SSTASAFYNALTDMLWHFGQKRGAQL 734 (877)
Q Consensus 660 ~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~---~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 734 (877)
.+..+++.|.+....++.+..+..++.+++ + ..+.++++.+++++.+.+ |..+...+..|+-+|.+.|++++|.+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 345677778777776777777777776554 3 447889999999999988 54567888889999999999999999
Q ss_pred HHHHhhhhh
Q 002814 735 VVLEGKRRQ 743 (877)
Q Consensus 735 ~~~~~~~~~ 743 (877)
+++..++..
T Consensus 93 y~~~lL~ie 101 (152)
T 1pc2_A 93 YVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 999877643
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.12 Score=43.24 Aligned_cols=70 Identities=13% Similarity=0.055 Sum_probs=54.1
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcccc----CCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 002814 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREER----KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGY 224 (877)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 224 (877)
+++++..+...+.+.+++..|+..|+.+++.... ......++..+..++.+.|+++.|...++++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 4667778889999999999999999998875321 123456778888888888888888888888877643
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.13 Score=41.96 Aligned_cols=65 Identities=23% Similarity=0.043 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 002814 192 QGKLASAMISILGRLGK---VDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY 257 (877)
Q Consensus 192 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 257 (877)
+..++..+..++...++ .++|..+++++++..+. ++.+...+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34455555555543333 46666666666665433 5666666666666666666666666666654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.1 Score=42.58 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHcCCC---HHHHHHHHHHHHhcCCcchhHHHHHhhc-cccchHHHHHHHHHHHhhcCC
Q 002814 644 NVVTFSAILNACSRCNS---FEDASMLLEELRLFDNQVYGVAHGLLMG-YRDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 644 d~~t~~~ll~a~~~~g~---~~eA~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~A~~~~~~~~~~~~ 709 (877)
|...+..+..++...++ .++|..+|+++++.+|++......+... +..|++++|+..|+++++.+|
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 44445555555543332 5666666666666666665554444222 255666666666666666665
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.93 E-value=0.16 Score=42.49 Aligned_cols=70 Identities=7% Similarity=-0.091 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 508 DVVLYSALIDALCKNGLVESAVSLLDEMTKEG------IRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
+..-+..|...+.+.|+++.|...|+...+.- -.+...++..|..++.+.|++++|+..+++++...|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 44445566666666777777777666665420 11234466777777777777777777777777766654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.75 E-value=1.2 Score=40.72 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=22.9
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002814 311 RGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMP 361 (877)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (877)
..|+++.|.++.+++ .+...|..|.+...+.|+++-|.+.|.+..
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 445555555554433 134455555555555555555555555543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.16 Score=50.59 Aligned_cols=96 Identities=9% Similarity=-0.002 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHH
Q 002814 172 WSKAIQCFAFAVKREERKNDQGKLASAMISILGRL-----GKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS-GYCQ 245 (877)
Q Consensus 172 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~ 245 (877)
..+|...+++++..++.. .+..++..+...|.+. |+.+.|++.|+++++....-+..++......+++. |+.+
T Consensus 179 l~~A~a~lerAleLDP~~-~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSY-QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHCTTH-HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHHhCCCc-ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 356777777777775221 1456777788888774 88888888888888765543466777777777774 8888
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHH
Q 002814 246 EAISVFNSMKRYNLK--PNLVTYNA 268 (877)
Q Consensus 246 ~A~~~~~~m~~~g~~--p~~~~~~~ 268 (877)
+|.+.+++....... |+....|.
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHH
Confidence 888888888876655 65544443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.72 Score=42.22 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=22.3
Q ss_pred HHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 345 CKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEM 395 (877)
Q Consensus 345 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 395 (877)
.+.|+++.|.++.+++. +...|..|.+.....|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34455555555544431 4445555555555555555555555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.97 E-value=2.7 Score=36.11 Aligned_cols=138 Identities=11% Similarity=0.122 Sum_probs=71.3
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 311 RGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALN 390 (877)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~ 390 (877)
-.|.+++..++..+.... .+..-||.+|--....-+-+-..++++.+-+. .|. ..+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 356667777777666654 25555555555555555555555555544332 111 11222222222
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 002814 391 MFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCV 470 (877)
Q Consensus 391 ~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 470 (877)
.+-.+ ..+..-+..-++.+...|+-|+-.+++..+.... ++++...-.+..+|.+.|+..+|.+++.+.-++|+
T Consensus 83 C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 22221 1122233344555566666666666666643322 55666666666666666666666666666666654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.87 E-value=1.2 Score=39.16 Aligned_cols=118 Identities=13% Similarity=0.138 Sum_probs=77.8
Q ss_pred cCCChhhHHHHHHHHHccCCH------HHHHHHHHHHHHccccC--CCh---HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002814 152 KLCGADDYTFLLRELGNRGEW------SKAIQCFAFAVKREERK--NDQ---GKLASAMISILGRLGKVDLAKNIFETAL 220 (877)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~------~~A~~~~~~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 220 (877)
.+.++|.|...+..+-+.|+. ++.+++|++++..-+.. ..+ ..++...+ .+...++.++|+++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 345678887777777777888 88899999998763210 001 11111111 1234478889999999887
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 002814 221 NEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA 272 (877)
Q Consensus 221 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 272 (877)
+..-. =..+|......-.+.|++..|.+++.+....+.+| .......|.-
T Consensus 88 ~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~n 137 (161)
T 4h7y_A 88 ANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRN 137 (161)
T ss_dssp HHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHH
T ss_pred HHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHh
Confidence 75333 27777777777788899999999999888877664 3444444443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.70 E-value=2.7 Score=36.09 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC
Q 002814 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN 364 (877)
Q Consensus 301 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 364 (877)
.+...++.....|+-++-.+++..+.. ..+++....-.+..+|.+.|+..+|.+++.+.-++|
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 333444444444444444444444322 122334444444444444444444444444444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.36 E-value=0.36 Score=41.38 Aligned_cols=67 Identities=19% Similarity=0.087 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHhcC-C-cchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCC
Q 002814 643 PNVVTFSAILNACSRCNSFED---ASMLLEELRLFD-N-QVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 643 Pd~~t~~~ll~a~~~~g~~~e---A~~~~~~~~~~~-~-~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (877)
++..+--.+..++.++.+..+ ++.+++++...+ | .....++.+..++ +.|++++|.+.++.+++.+|
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 444443345555555554444 555555554433 2 2222233332222 45555555555555555555
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.31 E-value=20 Score=42.22 Aligned_cols=310 Identities=10% Similarity=-0.005 Sum_probs=148.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHH
Q 002814 237 AYGRSGYCQEAISVFNSMKRYNLKPNL--VTYNAVIDACGKGGVDFKHVVEIFDDMLRNGV-------QPDRITFNSLLA 307 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~-------~p~~~t~~~ll~ 307 (877)
+....|+.++++.+++.....+-..+. ..-..+.-+....| ..+++..++...+...- .+....-..|.-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag-~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAG-FGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTT-TTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 455667777777777766532101122 22223333344555 33456666666554211 011122223323
Q ss_pred HHHhCCC-HHHHHHHHHHHHHcCCCCCHHH--HH--HHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHH--HH
Q 002814 308 VCSRGGL-WEAARNLFNEMVHRGIDQDIFT--YN--TLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDG--YA 380 (877)
Q Consensus 308 ~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~--~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~--~~ 380 (877)
++.-.|. -+++.+.+..++... +..+ .. +|...|+-.|+-+....++..+.+.. +......+.-+ +.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 3332332 234445555554421 2221 12 22333445566666666666655431 33333333333 34
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 002814 381 KAGRLDDALNMFSEMKFLGIGLDRVSYN---TVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE 457 (877)
Q Consensus 381 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 457 (877)
..|+.+.+..+++.+.... .| ..-|. ++.-+|+..|+......++..+.+.. ..++.....+.-++...|+.+.
T Consensus 536 ~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSS
T ss_pred hCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHH
Confidence 5677777777777776542 11 22222 33345667778766666777776542 2233333333334444666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cC-------ChHH
Q 002814 458 VRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLY-KEAMQIFREFKQAGLKADVVLYSALIDALCK--NG-------LVES 527 (877)
Q Consensus 458 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g-------~~~~ 527 (877)
+.++++.+.+.+ .|.+..-..+.-+....|.. .+++.++..+.. .+|..+-..-+-++.. .| ++..
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~ 688 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVAD 688 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHH
Confidence 777777666553 33443334444444444443 677778888765 2454444333333333 22 3334
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHhhcCCh
Q 002814 528 AVSLLDEMTKE-GIRPNVVTYNSIIDAFGRSATT 560 (877)
Q Consensus 528 A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~ 560 (877)
.++.+...... .-.++...-..+..+....|.=
T Consensus 689 ~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~ 722 (963)
T 4ady_A 689 INKNFLSVITNKHQEGLAKFGACVAQGIMNAGGR 722 (963)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence 44444444332 1123334444555566555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.00 E-value=15 Score=39.50 Aligned_cols=94 Identities=14% Similarity=0.107 Sum_probs=45.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--CCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCH--HHH
Q 002814 479 TLIDVYSKGGLYKEAMQIFREFKQ--AGLKAD---VVLYSALIDALCKNGLVESAVSLLDEMTK----EGIRPNV--VTY 547 (877)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~--~~~ 547 (877)
.|...|...|++.+|..++..+.. .|.... ...|...+..|...+++.+|..+++++.. ....|+. ..+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 344555555556665555555532 111111 23444455556666666666666665531 1111221 233
Q ss_pred HHHHHHHhhcCChhhhHHHHHHHhh
Q 002814 548 NSIIDAFGRSATTECTVDDVERDLG 572 (877)
Q Consensus 548 ~~li~~~~~~g~~~~a~~~~~~~l~ 572 (877)
...+..+...+++.+|.+.+.++..
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4445555556666666555555444
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.00 E-value=11 Score=37.99 Aligned_cols=167 Identities=13% Similarity=0.072 Sum_probs=87.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHH
Q 002814 337 YNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNM----FSEMKFLGIGLDRVSYNTVLS 412 (877)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~pd~~~~~~li~ 412 (877)
|.++..-|.+.+++++|++++..-. ..+.+.|+...|-++ ++-..+.++++|......|+.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4445555666667777766654321 123344554444443 333344566666666666665
Q ss_pred HHHHcCCHH-HHHHHHHHH----HHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 413 IYAKLGRFE-EALLVCKEM----ESSG--IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYS 485 (877)
Q Consensus 413 ~~~~~g~~~-~A~~~~~~m----~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 485 (877)
.+.....-+ .-.++.+++ .+.| -.-|+.....+...|.+.|++.+|...|-.- -.-|...+..++.-+.
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWL 176 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHH
Confidence 554432111 011222222 2222 1247788888889999999999988877521 1113455555554444
Q ss_pred hc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 486 KG---GLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 486 ~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
+. |...++--+.- .++ --|...|+...|..+|+...+
T Consensus 177 ~~~~~~~~~e~dlf~~--------------RaV-L~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 177 CQVDDIEDSTVAEFFS--------------RLV-FNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHTTCCCHHHHHHHHH--------------HHH-HHHHHTTBHHHHHHHHHHHHH
T ss_pred HhcCCCCcchHHHHHH--------------HHH-HHHHHhcCHHHHHHHHHHHHH
Confidence 43 44433221111 112 235567888888888877653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.55 E-value=2.8 Score=36.96 Aligned_cols=113 Identities=12% Similarity=0.111 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHCCCCCCH----HHHHHHHH---HHHhcCCHHHHHHHHHHHHH
Q 002814 436 RKDAVTYNALLGGYGKQGKY------DEVRRMFEQMKADCVSPNL----LTYSTLID---VYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 436 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~----~t~~~li~---~~~~~g~~~~A~~~~~~m~~ 502 (877)
+.|..+|-..+....+.|+. ++.+++|++.... ++|+. ..|.-|-- .+...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34555666666666656666 6666666666553 44431 11111111 11233678888888888866
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002814 503 AGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSII 551 (877)
Q Consensus 503 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 551 (877)
.+-+- ...|......-.+.|++..|.+++.+.+..+..|. ..+...+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~ 135 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIAL 135 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHH
Confidence 53333 67777777777788888888888888887765543 3333333
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.54 E-value=1.1 Score=38.35 Aligned_cols=80 Identities=6% Similarity=-0.072 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHHhhcc----ccchHHHHHHHHHHHhhcC-CCcchhHHHHHHHHHHhcCchhhHHHHH
Q 002814 662 EDASMLLEELRLFDNQVYGVAHGLLMGY----RDNIWVQALSLFDEVKLMD-SSTASAFYNALTDMLWHFGQKRGAQLVV 736 (877)
Q Consensus 662 ~eA~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 736 (877)
..+.+.|.+....++.+..+..++.+++ ...+..+++.+++.+.+.+ |..+......|+-++.+.|++++|..++
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3444444444444444444444554433 2345556777777776655 3335556666677777777777777776
Q ss_pred HHhhh
Q 002814 737 LEGKR 741 (877)
Q Consensus 737 ~~~~~ 741 (877)
+..++
T Consensus 98 ~~lL~ 102 (126)
T 1nzn_A 98 RGLLQ 102 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.46 E-value=17 Score=37.07 Aligned_cols=167 Identities=14% Similarity=0.087 Sum_probs=89.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHHH
Q 002814 337 YNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMF----SEMKFLGIGLDRVSYNTVLS 412 (877)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~pd~~~~~~li~ 412 (877)
|.++..-|.+.+++++|++++..-- ..+.+.|+...|.++- +-+.+.++++|......|+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4455556777788888887764321 1234445554444443 33344566677766666666
Q ss_pred HHHHcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 413 IYAKLGRFE-EALLVCKEME----SSG--IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYS 485 (877)
Q Consensus 413 ~~~~~g~~~-~A~~~~~~m~----~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 485 (877)
.+.....-+ .=..+.++++ +.| -.-|......+...|.+.+++.+|...|- . |-.+....+..++.-+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHH
Confidence 655444311 1111222221 112 23467777888888888899888888773 2 33333456655554444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 486 KGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 486 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
+.+...++ |...-.+++ -|...++...|..+|+...+
T Consensus 179 ~~~~~~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 179 KQDESHTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTSCGGGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 43321111 222222222 35567778888777766654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.20 E-value=34 Score=40.22 Aligned_cols=256 Identities=9% Similarity=0.019 Sum_probs=127.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCC-------CCCHHHHHHHHH
Q 002814 307 AVCSRGGLWEAARNLFNEMVHRGIDQD--IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNI-------SPNVVTYSTMID 377 (877)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~pd~~~~~~li~ 377 (877)
-+....|+.++++.+++..+..+-..+ +..-..+.-+...+|..+++.+++.......- .+.+..-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 346677888888777776654211122 33334444455566666677776666554310 011122222322
Q ss_pred HHHHcCC-HHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHH
Q 002814 378 GYAKAGR-LDDALNMFSEMKFLGIGLDRV----SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALL--GGYG 450 (877)
Q Consensus 378 ~~~~~g~-~~~A~~~~~~m~~~g~~pd~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li--~~~~ 450 (877)
+++-.|. -+++.+.+..+.... +.. .-.+|...+.-.|+-+....++..+.+.. +..+...+. -++.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 3333332 245666666666542 211 11233334456677777777777666532 333333333 3344
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 002814 451 KQGKYDEVRRMFEQMKADCVSPNLLTYS---TLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (877)
Q Consensus 451 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 527 (877)
..|+.+.+..+.+.+.... .| ..-|. ++.-+|+-.|+.....++++.+.+.. ..++.....+.-++...|+.+.
T Consensus 536 ~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSS
T ss_pred hCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHH
Confidence 6678787777777776641 11 22232 33445667778777767887777642 2233333333334445677666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCh-hhhHHHHHHHhh
Q 002814 528 AVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATT-ECTVDDVERDLG 572 (877)
Q Consensus 528 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~l~ 572 (877)
+.++++.+.+.+ .|...--..+.-+....|.- .++++.+.+...
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 677776665542 22222222222222323332 455665555543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.08 E-value=1.6 Score=38.01 Aligned_cols=45 Identities=13% Similarity=0.010 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhh
Q 002814 696 QALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGK 740 (877)
Q Consensus 696 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 740 (877)
+++.+++.+...+|.........|+-++.++|++++|.++.+..+
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444443344444445555555555555555554433
|
| >2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=87.47 E-value=1.1 Score=35.34 Aligned_cols=63 Identities=29% Similarity=0.257 Sum_probs=46.4
Q ss_pred cchhhccchHHHHHHHHHHHHHHHHhhhccCCCCCceeEEeeccccccccCchhhHHHHHHHHhcCC--CCcccccCC
Q 002814 753 CLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMG--APFWVANCN 828 (877)
Q Consensus 753 ~~dl~~~s~g~a~~~~~~w~~~~~~~~~~~~~~p~~~~i~~g~g~h~~~~~~~~~~~~i~~~l~~l~--~pf~~~~~~ 828 (877)
.+|||.+...+|...+..++.+-.. .| -.++.|++|.|. ..+++.|...|+.-. .-|+.+..+
T Consensus 6 ~lDLhG~~~~eA~~~l~~fl~~a~~---~g---~~~v~IIHGkG~-------GvLr~~V~~~L~~~~~V~~f~~a~~~ 70 (83)
T 2zqe_A 6 EVDLRGLTVAEALLEVDQALEEARA---LG---LSTLRLLHGKGT-------GALRQAIREALRRDKRVESFADAPPG 70 (83)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHH---TT---CSEEEEECCSTT-------SHHHHHHHHHHHHCTTEEEEEECCTT
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHH---CC---CCEEEEEECCCc-------hHHHHHHHHHHhcCCceeEEEEcCcc
Confidence 5899999999999999998876442 22 246899999886 368899999998743 234544443
|
| >3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.42 E-value=0.69 Score=40.45 Aligned_cols=60 Identities=23% Similarity=0.333 Sum_probs=45.7
Q ss_pred cchhhccchHHHHHHHHHHHHHHHHhhhccCCCCCceeEEeeccccccccCchhhHHHHHHHHhcCC
Q 002814 753 CLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMG 819 (877)
Q Consensus 753 ~~dl~~~s~g~a~~~~~~w~~~~~~~~~~~~~~p~~~~i~~g~g~h~~~~~~~~~~~~i~~~l~~l~ 819 (877)
.+|||.|...+|..++..++.+-.. .| -.++.|++|.|.||. .+...+++.|...|+...
T Consensus 49 ~LDLHG~~~~EA~~~L~~fL~~a~~---~g---~r~V~IIHGKG~gs~-~~~~vLk~~V~~wL~~~~ 108 (137)
T 3qd7_X 49 SLNLLRQPVEECRKMVFSFIQQALA---DG---LRNVLIIHGKGRDDK-SHANIVRSYVARWLTEFD 108 (137)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHH---TT---CSEEEEECCCCSSTT-SHHHHHHHHHHHHHHTST
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHH---CC---CCEEEEEECCCCCCC-CchHHHHHHHHHHHhcCC
Confidence 6999999999999999999876432 22 236889999999862 112367889999998843
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.01 E-value=3 Score=48.03 Aligned_cols=130 Identities=14% Similarity=0.091 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-------CCCCCCHH--
Q 002814 231 FSALISAYGRSGY-CQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR-------NGVQPDRI-- 300 (877)
Q Consensus 231 ~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~-------~g~~p~~~-- 300 (877)
-..|+..+...|+ ++.|+.+|+++.+....-+......++..+...+.+--+|.+++.+.++ .-...+..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3445555555555 4778888888876432212222223333333322122345555544432 11111211
Q ss_pred --------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002814 301 --------TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMP 361 (877)
Q Consensus 301 --------t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (877)
....=.+.|...|+++.|+++-++..... +.+-.+|..|..+|.+.|+++.|+-.++-+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11111344667888999998888888753 3357788999999999999999988888775
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=85.94 E-value=0.02 Score=60.69 Aligned_cols=376 Identities=12% Similarity=0.164 Sum_probs=204.9
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 002814 154 CGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSA 233 (877)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 233 (877)
.+|..|..++....+.|.|++-++.+.-+.+.. . ...+=+.|+-+|++.+++.+-.+++. .||+.-...
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-k---e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~ 149 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-R---ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQ 149 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-C---STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-c---ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHH
Confidence 357778888888888999988888776544332 1 22344678888999888776544432 245444556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC--------------------CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Q 002814 234 LISAYGRSGYCQEAISVFNSMKRYN--------------------LKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN 293 (877)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~~g--------------------~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~ 293 (877)
+.+-|...|.++.|.-+|..+.... -.-+..||-.+-.+|...+ ++.-|.-.--.++-.
T Consensus 150 VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~-EfrLAqicGLniIvh 228 (624)
T 3lvg_A 150 VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK-EFRLAQMCGLHIVVH 228 (624)
T ss_dssp HHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSC-TTTTTTHHHHHHHCC
T ss_pred HHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCch-HHHHHHHhcchhccc
Confidence 6677777777777776665542211 0236678888888888888 776665443333321
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC-CCCC-----
Q 002814 294 GVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK-NISP----- 367 (877)
Q Consensus 294 g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p----- 367 (877)
+| -...|+..|-..|.+++.+.+++.-+.. -......|+-|.-.|+|- +.++-.+.++..-.+ +++-
T Consensus 229 ---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvirac 301 (624)
T 3lvg_A 229 ---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAA 301 (624)
T ss_dssp ---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHH
T ss_pred ---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHH
Confidence 11 1234566677788888888887776632 124567777777777765 344444444433222 1111
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHH-------------HHHHHCCCCCCHHHHHHHHHHHH---------------HcC
Q 002814 368 -NVVTYSTMIDGYAKAGRLDDALNMF-------------SEMKFLGIGLDRVSYNTVLSIYA---------------KLG 418 (877)
Q Consensus 368 -d~~~~~~li~~~~~~g~~~~A~~~~-------------~~m~~~g~~pd~~~~~~li~~~~---------------~~g 418 (877)
....|.-++-.|++-.++|.|.... ++...+ ..|...|-.-|..|. ..=
T Consensus 302 E~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prl 379 (624)
T 3lvg_A 302 EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRL 379 (624)
T ss_dssp TTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTC
T ss_pred HHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccC
Confidence 2234677777777777777664321 111111 223333333333332 222
Q ss_pred CHHHHHHHHHHHHH----------CCCCCCHHHHHHHHHHHHHcCCHHHHHH------------HHHHHHHCCCCCCHHH
Q 002814 419 RFEEALLVCKEMES----------SGIRKDAVTYNALLGGYGKQGKYDEVRR------------MFEQMKADCVSPNLLT 476 (877)
Q Consensus 419 ~~~~A~~~~~~m~~----------~g~~~~~~~~~~li~~~~~~g~~~~A~~------------~~~~m~~~g~~p~~~t 476 (877)
+...+.++|++.-. ..-..+..+-.++-+.|....+++.-+. +-+++.+. .-...
T Consensus 380 Dh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eF 456 (624)
T 3lvg_A 380 DHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEF 456 (624)
T ss_dssp CSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHH
T ss_pred ChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHH
Confidence 33333333332110 0012234444556666666666554322 22222221 01122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 002814 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556 (877)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 556 (877)
-..-...|.+.+++++++.+.++ ...|.-.|......|+.+-|.++++-..+.| +...|.+.+-.|..
T Consensus 457 RrIAA~LYkkn~rw~qsi~l~Kk---------DklykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYd 524 (624)
T 3lvg_A 457 RRIAAYLFKGNNRWKQSVELCKK---------DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYD 524 (624)
T ss_dssp HHHHHHHHHTTCHHHHHSSCSST---------TCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcccHHHHHHHHHh---------cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhh
Confidence 22333456667777777655321 1122333444556777777888888777754 55667777777766
Q ss_pred cCChhhhHH
Q 002814 557 SATTECTVD 565 (877)
Q Consensus 557 ~g~~~~a~~ 565 (877)
.=+.+.+++
T Consensus 525 LlrpDvVlE 533 (624)
T 3lvg_A 525 LLRPDVVLE 533 (624)
T ss_dssp SSSCHHHHH
T ss_pred ccChHHHHH
Confidence 666665544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.79 E-value=7 Score=44.96 Aligned_cols=131 Identities=15% Similarity=0.131 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhC------CCCC-CHH
Q 002814 194 KLASAMISILGRLGK-VDLAKNIFETALNEGYGNTVYAFSALISAYGRSGY-CQEAISVFNSMKRY------NLKP-NLV 264 (877)
Q Consensus 194 ~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~------g~~p-~~~ 264 (877)
.+...++..+.-.++ .+.|..+|+++.+.....++....++|..+.+.+. --+|+.++.+..+. ...+ +..
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 355667777766777 58899999999887543333333444444444432 23566666554321 1111 211
Q ss_pred ----------HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002814 265 ----------TYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMV 326 (877)
Q Consensus 265 ----------~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~ 326 (877)
..+.-.+-|...| +++.|+++-++.+..- +-+-.+|..|..+|...|+++.|+-.+..+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~-~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRG-DYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccC-cHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1111123355677 9999999999998763 3367899999999999999999998887763
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.44 E-value=13 Score=39.33 Aligned_cols=118 Identities=12% Similarity=0.050 Sum_probs=74.1
Q ss_pred ccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 002814 168 NRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKV-DLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQE 246 (877)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 246 (877)
..|+.+.|.+.+..++..-..+.-.. . . ...+ .....-+++.. ..+...++..+...|++++
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~-~--------~-~~~w~~~~r~~l~~~~-------~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDD-L--------R-DFQFVEPFATALVEDK-------VLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGG-G--------T-TSTTHHHHHHHHHHHH-------HHHHHHHHHHHHHTTCHHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCC-C--------C-chhHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCCHHH
Confidence 45788888888888876521111100 0 0 0111 11122222221 1244557777888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 002814 247 AISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR-----NGVQPDRITFNS 304 (877)
Q Consensus 247 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~-----~g~~p~~~t~~~ 304 (877)
|+..+..+..... -+...|..+|.++.+.| +..+|++.|+.+.+ .|+.|...+-..
T Consensus 190 a~~~l~~~~~~~P-~~E~~~~~lm~al~~~G-r~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 190 VIAELEALTFEHP-YREPLWTQLITAYYLSD-RQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 8888888776432 27778888888888888 88888888887654 488888776543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.10 E-value=3.7 Score=43.56 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 002814 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK-----EGIRPNVVTYN 548 (877)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 548 (877)
...++..+...|++++|...+..+.... +.+...|..+|.+|.+.|+..+|++.|+++.+ .|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4456777888999999999888887765 45788999999999999999999999988754 48888876543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.95 E-value=5.1 Score=34.46 Aligned_cols=80 Identities=8% Similarity=-0.037 Sum_probs=40.4
Q ss_pred HHHHHHHH-HC-CCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHhcCCc-chhHHHHHhhcc-ccchHHHHHHHHH
Q 002814 630 LGVFQKMH-KL-KIKPNVVTFSAILNACSRCNS---FEDASMLLEELRLFDNQ-VYGVAHGLLMGY-RDNIWVQALSLFD 702 (877)
Q Consensus 630 ~~~~~~m~-~~-g~~Pd~~t~~~ll~a~~~~g~---~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~~~~~A~~~~~ 702 (877)
+..|++.- .+ +-.|...|--.+..++.++.. ..+|+.+++++...++. .-..++.+..|+ +.|++++|.+..+
T Consensus 23 L~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d 102 (134)
T 3o48_A 23 LEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 102 (134)
T ss_dssp HHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44444443 22 333444443345555555544 34566666666554442 223333333333 5666666666666
Q ss_pred HHhhcCC
Q 002814 703 EVKLMDS 709 (877)
Q Consensus 703 ~~~~~~~ 709 (877)
.+++.+|
T Consensus 103 ~lL~~eP 109 (134)
T 3o48_A 103 TLFEHER 109 (134)
T ss_dssp HHHTTCT
T ss_pred HHHhhCC
Confidence 6666666
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=81.90 E-value=22 Score=43.61 Aligned_cols=131 Identities=11% Similarity=0.058 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002814 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL----LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSAL 515 (877)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 515 (877)
.-|..++..+.+.|.++.+.++-...++....-+. ..|..+...+.+.|++++|...+-.+..... -......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 34555666666666666666666555543211111 2456666666667777777666666655432 23444455
Q ss_pred HHHHHHcCC------------hHHHHHHHHHHHH-C-CCCCCHHHHHHHHHHHhhcCChhhhHHHH-HHHhh
Q 002814 516 IDALCKNGL------------VESAVSLLDEMTK-E-GIRPNVVTYNSIIDAFGRSATTECTVDDV-ERDLG 572 (877)
Q Consensus 516 i~~~~~~g~------------~~~A~~~~~~m~~-~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~-~~~l~ 572 (877)
+..+|..|. .++..+++....+ . .+.....-|..|-.-+...|++..|..++ +++..
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 555554443 3444455443221 1 11111123445555557788888887664 44433
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.10 E-value=63 Score=34.63 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 476 TYSTLIDVYSKGGLYKEAMQIFREFKQ----AGLKAD--VVLYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 476 t~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
.+..-+..|...+++.+|..+++++.. ....|+ ...|..++..+...+++.+|.+.|.++.
T Consensus 179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 179 FILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445555556666666655555421 111111 1344555556666666666666666654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.02 E-value=49 Score=33.34 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 333 DIFTYNTLLDAICKGAQMDLAFEIMA 358 (877)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (877)
|......+...|.+.|++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 66777777777888888888777664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 877 | ||||
| d2d9ia1 | 83 | d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human ( | 2e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 |
| >d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 83 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: SMR domain-like family: Smr domain domain: Nedd4-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (97), Expect = 2e-05
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 751 ESCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRA 810
++ LDLH + A + L + P L ++TG G HS+ G ++ A
Sbjct: 1 QNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLS-VITGRGNHSQ-GGVARIKPA 58
Query: 811 VEVLLTGMGAPFWVAN 826
V L F
Sbjct: 59 VIKYLISHSFRFSEIK 74
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 0.001
Identities = 30/187 (16%), Positives = 69/187 (36%), Gaps = 9/187 (4%)
Query: 302 FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMP 361
+ +L V +++ A + + + L + +DLA +
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRR-- 262
Query: 362 AKNISPNVV-TYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420
A + P+ Y + + + G + +A + ++ S N + +I + G
Sbjct: 263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR-LCPTHADSLNNLANIKREQGNI 321
Query: 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLL-TYST 479
EEA+ + ++ + A ++ L +QGK E ++ +A +SP YS
Sbjct: 322 EEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYK--EAIRISPTFADAYSN 378
Query: 480 LIDVYSK 486
+ + +
Sbjct: 379 MGNTLKE 385
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 877 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.2 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.13 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.1 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.08 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.06 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.06 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.01 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.97 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.9 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.85 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.49 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.44 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.39 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.39 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.35 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.33 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.32 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.31 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.3 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.25 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.24 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.2 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.14 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.11 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.08 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.0 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.98 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.91 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.88 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.86 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.84 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.83 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.81 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.8 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.8 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d2d9ia1 | 83 | Nedd4-binding protein 2 {Human (Homo sapiens) [Tax | 97.76 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.74 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.7 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.64 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.63 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.55 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.54 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.49 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.26 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.18 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.0 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.99 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.93 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.84 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.69 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.84 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.57 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.55 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.84 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.68 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.39 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 88.5 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 86.66 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1e-20 Score=204.71 Aligned_cols=383 Identities=15% Similarity=0.133 Sum_probs=313.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
+...+.+.|++++|++.|+.+++.. |.+..++..++.+|.+.|++++|+..|+++++..+. +..+|..+...|.+.
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhh
Confidence 4556778899999999999999875 556778899999999999999999999999987543 688999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 002814 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNL 321 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 321 (877)
|++++|+..+....+.... +...+........... ....+............ ................+....+...
T Consensus 81 g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAG-DMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHS-CSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred ccccccccccccccccccc-cccccccccccccccc-ccccccccccccccccc-ccccccccccccccccchhhhhHHH
Confidence 9999999999999875433 4444444444444444 44455555555544433 3445555666777788899999998
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 002814 322 FNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIG 401 (877)
Q Consensus 322 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 401 (877)
+....... +.+...+..+...+...|++++|...+++..+... -+...|..+...|...|++++|+..+++..... .
T Consensus 158 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 234 (388)
T d1w3ba_ 158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P 234 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred HHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-h
Confidence 88887764 34678888999999999999999999998887543 267889999999999999999999999988765 5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002814 402 LDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLI 481 (877)
Q Consensus 402 pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 481 (877)
.+...+..+...+.+.|++++|+..|++..+.. +.+..++..+...|.+.|++++|.+.++..... .+.+...+..+.
T Consensus 235 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~ 312 (388)
T d1w3ba_ 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHH
Confidence 577888889999999999999999999998875 567889999999999999999999999998876 355788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCC
Q 002814 482 DVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSAT 559 (877)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 559 (877)
..|.+.|++++|++.|++.++... -+..+|..+..+|.+.|++++|+..|++.++. .|+ ..+|..+..+|.+.||
T Consensus 313 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 313 NIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999987653 36778899999999999999999999999874 565 5588888888877764
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.8e-20 Score=201.21 Aligned_cols=378 Identities=14% Similarity=0.123 Sum_probs=219.9
Q ss_pred HHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 002814 273 CGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDL 352 (877)
Q Consensus 273 ~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 352 (877)
+.+.| ++++|++.|+++++... -+...+..+..+|.+.|++++|+..|+++++.. +.+..+|..+..+|.+.|++++
T Consensus 9 ~~~~G-~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 9 EYQAG-DFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHT-CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcC-CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 33444 55555555555544321 134444555555555555555555555555442 1234555555555555555555
Q ss_pred HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 353 AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMES 432 (877)
Q Consensus 353 A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 432 (877)
|++.+....+.... +...+......+...+....+........... .................+....+...+.....
T Consensus 86 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhc
Confidence 55555555543222 33333344444444444444444444433332 22333333444444555556666655555554
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002814 433 SGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLY 512 (877)
Q Consensus 433 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 512 (877)
.. +.+...+..+...+...|++++|...+++.++.. +-+...|..+...+...|++++|...|++....+. .+...+
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 240 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHH
Confidence 43 3445555666666666666666666666665542 22455666666666666666666666666665442 355566
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhh
Q 002814 513 SALIDALCKNGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDV 591 (877)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 591 (877)
..+...+.+.|++++|+..|+++.+. .| +..+|..+..++...|++++|+.
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~-------------------------- 292 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAED-------------------------- 292 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHH--------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH--------------------------
Confidence 66666666666677776666666653 23 33456666666666555554444
Q ss_pred hhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 002814 592 QEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEEL 671 (877)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~ 671 (877)
.|++.... ...+...+..+..++...|++++|.+.|+++
T Consensus 293 ----------------------------------------~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 331 (388)
T d1w3ba_ 293 ----------------------------------------CYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp ----------------------------------------HHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ----------------------------------------HHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHH
Confidence 33333331 2234555667777788888888888888888
Q ss_pred HhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCc
Q 002814 672 RLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQ 728 (877)
Q Consensus 672 ~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 728 (877)
++.+|++..+..++...+ ..|++++|++.|+++++++| .+..+|..|+.+|.++|+
T Consensus 332 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTCC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 888887777666665444 67888888888888889998 678889999999988874
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=6.9e-13 Score=138.78 Aligned_cols=243 Identities=11% Similarity=0.013 Sum_probs=160.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002814 445 LLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL 524 (877)
Q Consensus 445 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 524 (877)
....+.+.|++++|+..|+++++.. +-+..+|..+..+|...|++++|...|++..+... -+...|..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccccc
Confidence 4445666667777777776666652 22456666666666666666666666666665442 245566666666666666
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHH
Q 002814 525 VESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKV 604 (877)
Q Consensus 525 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (877)
+++|.+.++++... .|+...+.............. .....+ .
T Consensus 103 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~-~- 144 (323)
T d1fcha_ 103 QRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLG----------------------------------PSKRIL-G- 144 (323)
T ss_dssp HHHHHHHHHHHHHT--STTTGGGCC-------------------------------------------------CTT-H-
T ss_pred ccccccchhhHHHh--ccchHHHHHhhhhhhhhcccc----------------------------------cchhhH-H-
Confidence 66666666666553 222111000000000000000 000000 0
Q ss_pred HHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHH
Q 002814 605 FGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLK-IKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAH 683 (877)
Q Consensus 605 ~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g-~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~ 683 (877)
.....+.+.+|++.|++..... -..+..++..+...+...|++++|...|+++...+|.+..+..
T Consensus 145 --------------~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 210 (323)
T d1fcha_ 145 --------------SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 210 (323)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred --------------HHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchh
Confidence 0111235677888998887632 2335677888999999999999999999999999998887777
Q ss_pred HHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhh
Q 002814 684 GLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 684 ~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (877)
.+...+ ..|++++|++.|+++++++| .+...|..|+.+|.+.|++++|...+.++++.
T Consensus 211 ~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 211 KLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 665544 78999999999999999999 67889999999999999999999999998764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.8e-12 Score=134.03 Aligned_cols=271 Identities=14% Similarity=0.065 Sum_probs=152.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002814 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYG 239 (877)
Q Consensus 160 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 239 (877)
......+.+.|++++|+..|+.+++.. |.+..++..++.++...|++++|...|+++++..+. +...|..++..|.
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 98 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD---PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFT 98 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccc
Confidence 345667889999999999999999885 556778999999999999999999999999987543 6889999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 002814 240 RSGYCQEAISVFNSMKRYNLKPNLVTY-NAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAA 318 (877)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 318 (877)
..|++++|++.++++.... |+.... ......... . +.......+..+...+.+.+|
T Consensus 99 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~--------------------~~~~~~~~~~~~~~~~~~~~a 155 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGG-A--------------------GLGPSKRILGSLLSDSLFLEV 155 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTGGGCC------------------------------------CTTHHHHHHHHHHHH
T ss_pred ccccccccccchhhHHHhc--cchHHHHHhhhhhhhh-c--------------------ccccchhhHHHHHHhhHHHHH
Confidence 9999999999999988643 221110 000000000 0 000000011111222333444
Q ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 319 RNLFNEMVHRGI-DQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKF 397 (877)
Q Consensus 319 ~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (877)
...|.+.++... ..+..++..+...+...|++++|+..|++...... -+...|..+...|.+.|++++|++.|++..+
T Consensus 156 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 234 (323)
T d1fcha_ 156 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALE 234 (323)
T ss_dssp HHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHH
Confidence 444444443221 12344444455555555555555555555443321 1344455555555555555555555555444
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002814 398 LGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS----------GIRKDAVTYNALLGGYGKQGKYDEVR 459 (877)
Q Consensus 398 ~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------g~~~~~~~~~~li~~~~~~g~~~~A~ 459 (877)
.. +-+..++..+..+|.+.|++++|+..|++.++. ........|..+-.++...|+.+.+.
T Consensus 235 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 235 LQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred Hh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 32 223444555555555555555555555544331 11223444555555555555554443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.20 E-value=7.9e-11 Score=123.39 Aligned_cols=262 Identities=9% Similarity=-0.033 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH----------HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 002814 420 FEEALLVCKEMESSGIRKDAVTYNALLGG----------YGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGG- 488 (877)
Q Consensus 420 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g- 488 (877)
.++|+++++++++.. +-+...|+..-.. +...|++++|+.+++...+.. +-+...|..+..++...+
T Consensus 45 ~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhcc
Confidence 466777777666543 3334444333222 233455788888888887753 346777777777777665
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHH
Q 002814 489 -LYKEAMQIFREFKQAGLKADVVLYSA-LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDD 566 (877)
Q Consensus 489 -~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 566 (877)
++++|...+.++.+... .+...+.. +...+...|..++|+..++++++... -+...|..+..++.+.|++++|...
T Consensus 123 ~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~ 200 (334)
T d1dcea1 123 PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 200 (334)
T ss_dssp CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 48899999999887643 35555544 44566678889999999998887643 2566888888899999999988777
Q ss_pred HHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCC-CH
Q 002814 567 VERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NV 645 (877)
Q Consensus 567 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~P-d~ 645 (877)
+.+++...+....... .+. ..+ ...++...+.+.... .| +.
T Consensus 201 ~~~~~~~~~~~~~~~~---------------------~~~-----~l~----------~~~~a~~~~~~~l~~--~~~~~ 242 (334)
T d1dcea1 201 GRLPENVLLKELELVQ---------------------NAF-----FTD----------PNDQSAWFYHRWLLG--RAEPL 242 (334)
T ss_dssp CSSCHHHHHHHHHHHH---------------------HHH-----HHC----------SSCSHHHHHHHHHHS--CCCCS
T ss_pred HHHhHHhHHHHHHHHH---------------------HHH-----Hhc----------chhHHHHHHHHHHHh--Ccchh
Confidence 6666665554321110 000 011 122366667776653 33 44
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 002814 646 VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLW 724 (877)
Q Consensus 646 ~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 724 (877)
..+..++..+...|+.++|...+.+..+.+|....+...+...+ ..|++++|++.++++++++| .+..+|+.|.+.+.
T Consensus 243 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP-~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 243 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP-MRAAYLDDLRSKFL 321 (334)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHh
Confidence 45666777778889999999999999988888777766665444 68899999999999999999 67888998877765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=2.5e-09 Score=110.25 Aligned_cols=215 Identities=12% Similarity=0.065 Sum_probs=166.2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGK-VDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
+.+..+...+.+.+.+++|+++++.++..+ |.+..+|+....++...|+ +++|...++.+++..+. +..+|+.+.
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln---P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~ 119 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHh
Confidence 345556667788899999999999999986 6677899999999888774 89999999999887554 789999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC-
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL- 314 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~- 314 (877)
..+.+.|++++|++.|+++.+.... +..+|+.+...+.+.+ ++++|++.++++++..+. +...|+.+..++.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~-~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFK-LWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT-CCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred HHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHcccc
Confidence 9999999999999999999986544 7889999999999999 899999999999987544 67778877777766654
Q ss_pred -----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCC-CCHHHHHHHHHHHH
Q 002814 315 -----WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS-PNVVTYSTMIDGYA 380 (877)
Q Consensus 315 -----~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~~~~~li~~~~ 380 (877)
+++|...+.++++.. +.+...|+.+...+... ..+++.+.++...+.... .+...+..++..|.
T Consensus 197 ~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 678888888888764 33677777776655443 356666766665543221 23455555555554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=4.3e-09 Score=108.40 Aligned_cols=231 Identities=10% Similarity=0.048 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR-LDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (877)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 414 (877)
.|+.+...+.+.+.+++|+++++++++.... +...|+....++...|+ +++|++.+++..+.. +-+..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 4444444555555555555555555554322 44555555555555443 566666666555443 33455566666666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----
Q 002814 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGL----- 489 (877)
Q Consensus 415 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~----- 489 (877)
.+.|++++|+..++++++.. +.+..+|..+...+.+.|++++|+..|+++++.. +-+...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhh
Confidence 66666666666666666544 4456666666666666666666666666666542 2245556555555544443
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhc--CChhhhHH
Q 002814 490 -YKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDAFGRS--ATTECTVD 565 (877)
Q Consensus 490 -~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~--g~~~~a~~ 565 (877)
+++|++.+.++++... -+...|+.+...+.. ...+++.+.++...+....+ +...+..++..|... +..+.+..
T Consensus 201 ~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ 278 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVP-HNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 278 (315)
T ss_dssp HHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred hhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5667777777766542 356666666554433 33566777777666532222 344555666665432 44444444
Q ss_pred HHHHHhh
Q 002814 566 DVERDLG 572 (877)
Q Consensus 566 ~~~~~l~ 572 (877)
.+.++++
T Consensus 279 ~~~ka~~ 285 (315)
T d2h6fa1 279 ILNKALE 285 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=1.8e-08 Score=103.49 Aligned_cols=221 Identities=10% Similarity=0.031 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHHccccCCChHHHHHHHHHHHH--------------hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002814 172 WSKAIQCFAFAVKREERKNDQGKLASAMISILG--------------RLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (877)
Q Consensus 172 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 237 (877)
.+++..+|++++... +....+|..-+..+. ..+..++|..+|+++++...+.+...|...+..
T Consensus 32 ~~Rv~~vyerAl~~~---~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~ 108 (308)
T d2onda1 32 TKRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345667788887764 333445555444332 223457788888888865445567788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhCCCHH
Q 002814 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAV-CSRGGLWE 316 (877)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~ 316 (877)
+.+.|+++.|..+|+++.+.........|...+..+.+.+ +++.|.++|+++++.+.. +...|...... +...|+.+
T Consensus 109 ~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~-~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~ 186 (308)
T d2onda1 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE-GIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH-CHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHH
T ss_pred HHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHH
Confidence 8888888888888888877544333557888888888878 888888888888876443 33344333333 34467888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN-ISP--NVVTYSTMIDGYAKAGRLDDALNMFS 393 (877)
Q Consensus 317 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--d~~~~~~li~~~~~~g~~~~A~~~~~ 393 (877)
.|..+|+.+++. .+.+...|...++.+.+.|+++.|+.+|++..... ..| ....|...+..-...|+.+.+.++++
T Consensus 187 ~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~ 265 (308)
T d2onda1 187 VAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888776 34467778888888888888888888888876643 222 24567777777777788888887777
Q ss_pred HHHHC
Q 002814 394 EMKFL 398 (877)
Q Consensus 394 ~m~~~ 398 (877)
++.+.
T Consensus 266 r~~~~ 270 (308)
T d2onda1 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=1.4e-07 Score=98.41 Aligned_cols=194 Identities=10% Similarity=-0.023 Sum_probs=96.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKFLG----IGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS--GIRKD----AVT 441 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~----~~~ 441 (877)
+..+...+...|+++.+...+....... ......++..+...+...++..++...+.+.... ..... ...
T Consensus 136 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 215 (366)
T d1hz4a_ 136 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 215 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence 3344445555555555555555544321 1112233444444555555555555555443321 00111 223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHH
Q 002814 442 YNALLGGYGKQGKYDEVRRMFEQMKADCVSP---NLLTYSTLIDVYSKGGLYKEAMQIFREFKQ----AGLKAD-VVLYS 513 (877)
Q Consensus 442 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~ 513 (877)
+..+...+...|+.++|...+.+........ ....+..+...|...|++++|...++++.. .+..++ ...+.
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 295 (366)
T d1hz4a_ 216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 295 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHH
Confidence 4444555666666666666666654432111 133445566666666777777666666542 222222 33556
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC----CCCC----CHHHHHHHHHHHhhcCChhhhHH
Q 002814 514 ALIDALCKNGLVESAVSLLDEMTKE----GIRP----NVVTYNSIIDAFGRSATTECTVD 565 (877)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p----~~~~~~~li~~~~~~g~~~~a~~ 565 (877)
.+...|.+.|++++|++.|++..+. |... ....+..++..+...+.++++.+
T Consensus 296 ~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 296 LLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 6666777777777777777766432 2211 11234445555566666665543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=5.1e-08 Score=101.81 Aligned_cols=272 Identities=10% Similarity=0.005 Sum_probs=191.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHchhCC----CC-CCHHHHHHH
Q 002814 305 LLAVCSRGGLWEAARNLFNEMVHRGIDQD----IFTYNTLLDAICKGAQMDLAFEIMAEMPAKN----IS-PNVVTYSTM 375 (877)
Q Consensus 305 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~-pd~~~~~~l 375 (877)
....+...|++++|++++++.++.....+ ...++.+..+|...|++++|+..|++..+.. .. .....+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34556677777777777777766532211 2456667777777888888888877665321 10 112445666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHH
Q 002814 376 IDGYAKAGRLDDALNMFSEMKFL----GIGLD---RVSYNTVLSIYAKLGRFEEALLVCKEMESSG----IRKDAVTYNA 444 (877)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~~~----g~~pd---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~~~~~~~ 444 (877)
...+...|++..+...+.+.... +.... ...+..+...+...|+++.+...+....... ......++..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 77788889999888888876532 11111 2355667788999999999999998876542 2223556677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHH
Q 002814 445 LLGGYGKQGKYDEVRRMFEQMKADC--VSPN----LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK---ADVVLYSAL 515 (877)
Q Consensus 445 li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~l 515 (877)
+...+...++..++...+.+..... .... ...+..+...+...|++++|...+++..+.... .....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 7788889999999999888765421 1111 234566677888999999999999887654322 234566778
Q ss_pred HHHHHHcCChHHHHHHHHHHHH----CCCCCCHH-HHHHHHHHHhhcCChhhhHHHHHHHhhhhhh
Q 002814 516 IDALCKNGLVESAVSLLDEMTK----EGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKE 576 (877)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (877)
...+...|++++|...++++.. .+..|+.. ++..+..+|.+.|++++|++.++++++....
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 323 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 8899999999999999998863 34555543 7888889999999999999999999987554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=5.2e-08 Score=99.95 Aligned_cols=186 Identities=11% Similarity=0.066 Sum_probs=91.6
Q ss_pred HHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002814 350 MDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKE 429 (877)
Q Consensus 350 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 429 (877)
.++|..+|++..+...+-+...|...+..+.+.|+++.|..+|+++...........|...+..+.+.|+++.|..+|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 35555555555543333344455555555555566666666665555442111233455555555555555666666655
Q ss_pred HHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC
Q 002814 430 MESSGIRKDAVTYNALLGG-YGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG-LKA 507 (877)
Q Consensus 430 m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 507 (877)
+.+.+ +.+...|...... +...|+.+.|..+|+.++.. .+.+...|...++.+.+.|+++.|..+|++.++.. ..|
T Consensus 160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 55443 2233333322222 22235555555555555543 22344555555555555555555555555554432 111
Q ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 508 --DVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 508 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
....|...+..-...|+.+.+.+++++|.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 133455555544555555555555555543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.97 E-value=3e-09 Score=111.07 Aligned_cols=218 Identities=9% Similarity=-0.017 Sum_probs=111.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhCCCHHHH
Q 002814 241 SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGG-VDFKHVVEIFDDMLRNGVQPDRITFN-SLLAVCSRGGLWEAA 318 (877)
Q Consensus 241 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~A 318 (877)
.|++++|+.+|+...+...+ +...|..+..++...+ .++++|+..+++++..... +...+. .+...+...+.+++|
T Consensus 86 ~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHH
Confidence 34456666666666554322 4555555555544433 0356666666666654222 333332 333455556666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 319 RNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (877)
Q Consensus 319 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (877)
...++.+++... -+...|+.+...+.+.|++++|...+...... .. ....+...+...+..+++...+......
T Consensus 164 l~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 164 LAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV----LL-KELELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH----HH-HHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh----HH-HHHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 666666665542 25666666666666666666665544443332 11 1112223334445555555555555444
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 399 GIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (877)
Q Consensus 399 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (877)
. +.+...+..++..+...|+.++|...+.+..+.. +.+..+|..+...|.+.|++++|.+.|++..+.
T Consensus 238 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 238 R-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp C-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred C-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2 2333344444455555555666665555554432 223444555555555566666666666655553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=1.3e-08 Score=101.61 Aligned_cols=152 Identities=15% Similarity=0.032 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHccc-cCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002814 172 WSKAIQCFAFAVKREE-RKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISV 250 (877)
Q Consensus 172 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 250 (877)
.+.|+.-++.++.... ..+....++..+..+|.+.|++++|+..|++++...+. ++.+|+.+..+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhh
Confidence 4445555555554321 11223345666677777777777777777777765433 567777777777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002814 251 FNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVH 327 (877)
Q Consensus 251 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 327 (877)
|+++.+.... +..+|..+..++...| ++++|.+.|++.++.... +......+...+.+.+..+.+..+......
T Consensus 94 ~~~al~~~p~-~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 94 FDSVLELDPT-YNYAHLNRGIALYYGG-RDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHCTT-CTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhh-hhhhHHHHHHHHHHHh-hHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 7777764322 4556666666677777 777777777777665322 333333333344444444444444444444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=7.8e-08 Score=95.71 Aligned_cols=96 Identities=15% Similarity=-0.002 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHH
Q 002814 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYA 380 (877)
Q Consensus 301 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 380 (877)
+|..+..+|.+.|++++|+..|++.++.. +.+..+|+.+..+|.+.|++++|++.|+++.+.... +..++..+..+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 34444555555555666555555555542 224455555555555555555555555555543221 3344444555555
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 002814 381 KAGRLDDALNMFSEMKFL 398 (877)
Q Consensus 381 ~~g~~~~A~~~~~~m~~~ 398 (877)
..|++++|++.|++..+.
T Consensus 117 ~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhh
Confidence 555555555555554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.49 E-value=0.00012 Score=72.02 Aligned_cols=223 Identities=13% Similarity=0.025 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHchhCCCCCCHHHHHHH
Q 002814 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK----GAQMDLAFEIMAEMPAKNISPNVVTYSTM 375 (877)
Q Consensus 300 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 375 (877)
..+..|...+.+.+++++|++.|++..+.| |...+..|..+|.. ..+...|...+......+ +......+
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l 76 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 76 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence 344455555555666666666666666554 45555555555554 445666666666555543 33334444
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 376 IDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK----LGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (877)
Q Consensus 376 i~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 447 (877)
...+.. ..+.+.|...++...+.|. ......+...+.. ......+...+...... .+...+..|..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~ 150 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGS 150 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhh
Confidence 333332 3455666666666665542 2222222222222 33456666666665553 35556666666
Q ss_pred HHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 448 GYGK----QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALIDAL 519 (877)
Q Consensus 448 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 519 (877)
.|.. ..+...+...++...+.| +......+...|.. ..++++|...|++..+.| +...+..|...|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y 224 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 224 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred hhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHH
Confidence 6654 345666666666666654 55555556555554 456777777777777765 455666666666
Q ss_pred HH----cCChHHHHHHHHHHHHCCC
Q 002814 520 CK----NGLVESAVSLLDEMTKEGI 540 (877)
Q Consensus 520 ~~----~g~~~~A~~~~~~m~~~g~ 540 (877)
.+ ..+.++|.+.|++..+.|.
T Consensus 225 ~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 225 YNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HcCCCCccCHHHHHHHHHHHHHCcC
Confidence 54 2366777777777776653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=8.9e-06 Score=81.88 Aligned_cols=63 Identities=16% Similarity=0.086 Sum_probs=35.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHccccC---CChHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002814 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERK---NDQGKLASAMISILGRLGKVDLAKNIFETALN 221 (877)
Q Consensus 159 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (877)
|......|...++|++|++.|.++....... +....+|..+..+|.+.|++++|.+.++++..
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~ 105 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence 4445556666666777777666665432111 11234555666666666666666666665543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.39 E-value=7.5e-07 Score=84.40 Aligned_cols=99 Identities=11% Similarity=-0.064 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHH
Q 002814 643 PNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTD 721 (877)
Q Consensus 643 Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 721 (877)
|+...+...++.|.+.|++++|+..|+++++.+|.+..+..++...+ +.|++++|+..|+++++++| .+...|..++.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC-CcHHHHHHHHH
Confidence 66667778889999999999999999999999999888887776655 78899999999999999999 67888999999
Q ss_pred HHHhcCchhhHHHHHHHhhhh
Q 002814 722 MLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 722 ~~~~~g~~~~A~~~~~~~~~~ 742 (877)
+|..+|++++|...+.++...
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999888754
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=5.1e-06 Score=70.51 Aligned_cols=94 Identities=15% Similarity=0.040 Sum_probs=81.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002814 161 FLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240 (877)
Q Consensus 161 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 240 (877)
.....+.+.|++++|+.+|..++... |.+..+|..+..++.+.|++++|+..++.+++..+. +...|..+..++..
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC---CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHH
Confidence 34667788999999999999999885 566778999999999999999999999999987654 78889999999999
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 002814 241 SGYCQEAISVFNSMKRYN 258 (877)
Q Consensus 241 ~g~~~~A~~~~~~m~~~g 258 (877)
.|++++|+..|++..+..
T Consensus 84 ~~~~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKHE 101 (117)
T ss_dssp TTCHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHhC
Confidence 999999999999998743
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.35 E-value=0.00056 Score=67.02 Aligned_cols=227 Identities=11% Similarity=-0.014 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002814 228 VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK----GGVDFKHVVEIFDDMLRNGVQPDRITFN 303 (877)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~~a~~~~~~m~~~g~~p~~~t~~ 303 (877)
+..+..|...+.+.+++++|+++|++..+.| +..++..|...|.. .. +...|...+......+ +.....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~-d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEK-NLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcch-hHHHHHHhhccccccc---ccchhh
Confidence 3455556666666666666666666666543 44444444444443 23 5566666666655543 223333
Q ss_pred HHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHH
Q 002814 304 SLLAVCSR----GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGY 379 (877)
Q Consensus 304 ~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 379 (877)
.|...+.. ..+.+.|...++...+.| .......+...+....
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~l~~~~~~~~------------------------------- 120 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK------------------------------- 120 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS-------------------------------
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhh---hhhHHHhhcccccCCC-------------------------------
Confidence 33333322 344555555555555543 1222222222222100
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----
Q 002814 380 AKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK----LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK---- 451 (877)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---- 451 (877)
........+...+......+ +...+..|...|.. ..+...+...++...+.| +......+...|..
T Consensus 121 ~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~ 194 (265)
T d1ouva_ 121 VVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGA 194 (265)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSS
T ss_pred cccchhHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCccc
Confidence 01222334444444433322 33444444444443 234555555555555543 44444445444443
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 002814 452 QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAG 504 (877)
Q Consensus 452 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g 504 (877)
..++++|...|.+..+.| +...+..|..+|.+ ..+.++|.+.|++..+.|
T Consensus 195 ~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 195 TKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 456777777777777665 45566666666654 236677777777776665
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=9.9e-06 Score=75.66 Aligned_cols=62 Identities=18% Similarity=0.098 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 403 DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM 465 (877)
Q Consensus 403 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 465 (877)
+..+|..+..+|...|++++|+..|++.++.+ +.+...|..+..+|.+.|++++|...|++.
T Consensus 35 ~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~~~kA 96 (192)
T d1hh8a_ 35 HSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEA 96 (192)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHHHHHH
Confidence 33334444444444444444444444444333 333444444444444444444444444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1.5e-06 Score=73.96 Aligned_cols=94 Identities=13% Similarity=0.017 Sum_probs=78.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCc
Q 002814 650 AILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQ 728 (877)
Q Consensus 650 ~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 728 (877)
.-++.+...|++++|...|+++++.+|.+..+..++...+ ..|++++|+..++++++++| .+...|..++.++..+|+
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccC
Confidence 3467788889999999999999999998888777776555 67889999999999999998 678888899999999999
Q ss_pred hhhHHHHHHHhhhhhc
Q 002814 729 KRGAQLVVLEGKRRQV 744 (877)
Q Consensus 729 ~~~A~~~~~~~~~~~~ 744 (877)
+++|...+.++.+...
T Consensus 87 ~~~A~~~~~~a~~~~p 102 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEA 102 (117)
T ss_dssp HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999988876543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.31 E-value=1.6e-05 Score=79.87 Aligned_cols=164 Identities=9% Similarity=0.060 Sum_probs=98.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 002814 199 MISILGRLGKVDLAKNIFETALNE----GYGN-TVYAFSALISAYGRSGYCQEAISVFNSMKRYNLK-PN----LVTYNA 268 (877)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 268 (877)
...+|...|++++|.+.|.++.+. +..+ ...+|..+..+|.+.|++++|++.+++..+.... .+ ..++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 355688889999999999888653 1111 2457788888888889999888888876542100 01 334455
Q ss_pred HHHHHHc-CCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC------HHH
Q 002814 269 VIDACGK-GGVDFKHVVEIFDDMLRN----GVQP-DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD------IFT 336 (877)
Q Consensus 269 ll~~~~~-~g~~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~ 336 (877)
+...|.. .| ++++|++.|++..+. +..+ -..++..+...+...|++++|...|+++........ ...
T Consensus 123 l~~~~~~~~~-~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 123 LGEILENDLH-DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHhHhhHHH-HHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 5555533 46 777777777776531 1111 123456666677777777777777777665421111 112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHchhC
Q 002814 337 YNTLLDAICKGAQMDLAFEIMAEMPAK 363 (877)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 363 (877)
+..++..+...|+++.|.+.+++..+.
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 333444555667777777777766654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=2e-05 Score=73.49 Aligned_cols=123 Identities=11% Similarity=0.019 Sum_probs=86.6
Q ss_pred HHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 002814 341 LDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420 (877)
Q Consensus 341 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 420 (877)
...+...|++++|++.|+++.. ++..+|..+..+|.+.|++++|++.|++.++.. +-+...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~----~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQD----PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 4456677888888888877533 467777788888888888888888888887765 45677788888888888888
Q ss_pred HHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 421 EEALLVCKEMESSGIR--------------K-DAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (877)
Q Consensus 421 ~~A~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (877)
++|+..|++.+...-. . ...++..+..+|.+.|++++|.+.|....+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888888877653200 0 0234455566677777777777777766654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=1e-05 Score=72.97 Aligned_cols=96 Identities=8% Similarity=0.023 Sum_probs=79.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002814 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (877)
Q Consensus 159 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 238 (877)
+......+.+.|++++|+..|..+++.+ |.+...|..+..+|...|++++|+..|+++++..+. +..+|..++.+|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~ 88 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc---hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHH
Confidence 3445667788899999999999998885 556778888899999999999999999999887543 678888888999
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 002814 239 GRSGYCQEAISVFNSMKRYN 258 (877)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g 258 (877)
...|++++|+..|++.....
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVK 108 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999888754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.24 E-value=1.8e-06 Score=72.77 Aligned_cols=89 Identities=10% Similarity=-0.023 Sum_probs=78.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCc
Q 002814 650 AILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQ 728 (877)
Q Consensus 650 ~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 728 (877)
.++..+.+.|++++|...|+++++.+|.+..+...+...+ +.+++++|+..++++++++| .+..+|..|+.+|...|+
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHHCCC
Confidence 3566788899999999999999999999888777765554 78899999999999999999 788999999999999999
Q ss_pred hhhHHHHHHHh
Q 002814 729 KRGAQLVVLEG 739 (877)
Q Consensus 729 ~~~A~~~~~~~ 739 (877)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=1.7e-06 Score=73.86 Aligned_cols=95 Identities=9% Similarity=0.002 Sum_probs=80.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc----ccchHHHHHHHHHHHhhcCCCcc-hhHHHHHHHHH
Q 002814 649 SAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY----RDNIWVQALSLFDEVKLMDSSTA-SAFYNALTDML 723 (877)
Q Consensus 649 ~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 723 (877)
..|++.+...+++++|.+.|++++..+|.+..+..++...+ ..+++++|+++++++++.++.+. ..+|..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45788888889999999999999999999999988886554 35688899999999999887443 34788899999
Q ss_pred HhcCchhhHHHHHHHhhhhh
Q 002814 724 WHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 724 ~~~g~~~~A~~~~~~~~~~~ 743 (877)
.+.|++++|.+++.++++..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHhC
Confidence 99999999999999987654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=3.7e-05 Score=69.17 Aligned_cols=88 Identities=15% Similarity=0.106 Sum_probs=39.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 002814 448 GYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (877)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 527 (877)
.|.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|...|+++++... -+...|..++.+|...|++++
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHHHHHHHHcCCHHH
Confidence 3444444444444444444432 22344444444444444444444444444444331 133444444444444444444
Q ss_pred HHHHHHHHHH
Q 002814 528 AVSLLDEMTK 537 (877)
Q Consensus 528 A~~~~~~m~~ 537 (877)
|+..|++...
T Consensus 97 A~~~~~~a~~ 106 (159)
T d1a17a_ 97 ALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.11 E-value=1.1e-05 Score=76.07 Aligned_cols=103 Identities=14% Similarity=0.026 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 002814 472 PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSI 550 (877)
Q Consensus 472 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 550 (877)
|+...+......|.+.|++++|+..|++.++... -+...|..+..+|.+.|++++|+..|++.++. .|+ ..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence 5566666677777778888888888877776653 36777777788888888888888888887763 454 4477778
Q ss_pred HHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 551 IDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 551 i~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
..+|.+.|++++|+..++++++..|+.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 888888888888888888888776654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.08 E-value=1.2e-05 Score=67.37 Aligned_cols=93 Identities=11% Similarity=-0.030 Sum_probs=78.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002814 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (877)
Q Consensus 159 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 238 (877)
...+...+.+.|++++|+..|+.++... |.+..++..+..++.+.|++++|+..|+++++..+. +..+|..+...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y 94 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 94 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccc---cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHH
Confidence 3445667788999999999999999885 556778889999999999999999999999887543 688899999999
Q ss_pred HhcCCHHHHHHHHHHHH
Q 002814 239 GRSGYCQEAISVFNSMK 255 (877)
Q Consensus 239 ~~~g~~~~A~~~~~~m~ 255 (877)
...|++++|++.|++.+
T Consensus 95 ~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 95 TNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 99999999999998754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=3.6e-05 Score=70.09 Aligned_cols=85 Identities=11% Similarity=-0.067 Sum_probs=71.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHh
Q 002814 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWH 725 (877)
Q Consensus 647 t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 725 (877)
+|+.+..+|.+.|++++|...++.++..+|.+..+...+...+ ..|++++|+..|+++++++| .+..+...+..+...
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 5677888899999999999999999999999888887776555 68899999999999999999 688888888888766
Q ss_pred cCchhhH
Q 002814 726 FGQKRGA 732 (877)
Q Consensus 726 ~g~~~~A 732 (877)
.++..+.
T Consensus 143 ~~~~~~~ 149 (170)
T d1p5qa1 143 IRRQLAR 149 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=1.9e-05 Score=72.00 Aligned_cols=87 Identities=11% Similarity=0.016 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 002814 645 VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDML 723 (877)
Q Consensus 645 ~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 723 (877)
...|..+..++.+.|++++|+..++++++.+|.+..+..++...+ ..|++++|+..|+++++++| .+..++..|..+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~~~l~~~~ 155 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 345777888899999999999999999999999888877776555 67899999999999999999 6788888888777
Q ss_pred HhcCchhhH
Q 002814 724 WHFGQKRGA 732 (877)
Q Consensus 724 ~~~g~~~~A 732 (877)
.+..+..++
T Consensus 156 ~~l~~~~~~ 164 (169)
T d1ihga1 156 QKIKAQKDK 164 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665544443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=2.5e-05 Score=66.40 Aligned_cols=98 Identities=14% Similarity=-0.005 Sum_probs=68.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 002814 161 FLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKV---DLAKNIFETALNEGYGNT-VYAFSALIS 236 (877)
Q Consensus 161 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~g~~~~-~~~~~~li~ 236 (877)
.+++.+...+++++|.+.|+.++..+ |.+..++..+..++.+.++. ++|+.+|++++..+..++ ..+|..|..
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~---p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 45666777778888888888888775 44556777777777765544 458888888776543333 346777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 002814 237 AYGRSGYCQEAISVFNSMKRYNLKPNL 263 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~g~~p~~ 263 (877)
+|.+.|++++|++.|+++.+. .|+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~--~P~~ 105 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQT--EPQN 105 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHhhhHHHHHHHHHHHHh--CcCC
Confidence 888888888888888888773 4543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=1.8e-05 Score=68.17 Aligned_cols=95 Identities=8% Similarity=0.056 Sum_probs=74.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcc------hhHHHHHH
Q 002814 648 FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTA------SAFYNALT 720 (877)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~ 720 (877)
+-.+++.|...|++++|.+.|++++..+|.+..+..++...+ ..|++++|+..++++++++|... ..+|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445778888889999999999998888888887777775555 67889999999999888777322 23566677
Q ss_pred HHHHhcCchhhHHHHHHHhhhh
Q 002814 721 DMLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 721 ~~~~~~g~~~~A~~~~~~~~~~ 742 (877)
.++...+++++|..++.++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 7888888999999998877643
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.86 E-value=0.00016 Score=65.38 Aligned_cols=84 Identities=10% Similarity=-0.078 Sum_probs=71.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHh
Q 002814 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWH 725 (877)
Q Consensus 647 t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 725 (877)
+|+.+..+|.+.|++++|+..++.++..+|.+..+.......+ ..|++++|+..|+++++++| .+..+...+..+...
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 5667888889999999999999999999999888877776655 68899999999999999999 788888888888777
Q ss_pred cCchhh
Q 002814 726 FGQKRG 731 (877)
Q Consensus 726 ~g~~~~ 731 (877)
.++..+
T Consensus 145 ~~~~~e 150 (168)
T d1kt1a1 145 AKEHNE 150 (168)
T ss_dssp HHHHHH
T ss_pred HHhHHH
Confidence 665543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.84 E-value=0.011 Score=58.92 Aligned_cols=132 Identities=16% Similarity=0.122 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 002814 195 LASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274 (877)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 274 (877)
-...+++.|.+.|.++.|..+|..+. -|..++..+.+.+++..|.+++.+.. +..+|..+...|.
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACV 80 (336)
T ss_dssp -------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHH
Confidence 33556666777777777777776442 24556667777777777777776542 5567777777777
Q ss_pred cCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 002814 275 KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA 348 (877)
Q Consensus 275 ~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 348 (877)
+.. ....+ .+.......+......++..|-..|.+++...+++..... -..+...++.++..|++.+
T Consensus 81 ~~~-e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 81 DGK-EFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HTT-CHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred hCc-HHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 665 44332 2222333345555566777777777777777777766543 2345666777777777654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=0.00019 Score=65.03 Aligned_cols=97 Identities=12% Similarity=-0.052 Sum_probs=55.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHccccCCC------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 002814 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKND------------QGKLASAMISILGRLGKVDLAKNIFETALNEGYGN 226 (877)
Q Consensus 159 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 226 (877)
+......+.+.|++++|+..|..++........ ...+|..+..+|.+.|++++|+..++.++...+.
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~- 94 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN- 94 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc-
Confidence 334566788899999999999999876422111 1123344455555555555555555555554322
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002814 227 TVYAFSALISAYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 227 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 256 (877)
++.+|..+..+|...|++++|+..|++..+
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455555555555555555555555555554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.81 E-value=0.0042 Score=62.11 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHH
Q 002814 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMID 377 (877)
Q Consensus 298 ~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~ 377 (877)
|..-...+++.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~ 77 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCF 77 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHH
Confidence 333334455556666666666666654332 4455566666666666666655432 4556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002814 378 GYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG 453 (877)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 453 (877)
.+.+.....-| .+.......+......++..|...|.+++...+++...... ..+...++-++..|++.+
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 66665554332 12222233444555566666667777777666666654332 455666666666666654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.80 E-value=5.6e-05 Score=67.37 Aligned_cols=80 Identities=6% Similarity=-0.046 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 002814 646 VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLW 724 (877)
Q Consensus 646 ~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 724 (877)
.+|+.+..+|.+.|++++|.+.++.+++.+|.+..+.......+ ..|++++|+..|+++++++| .+..+...+..+.-
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 46778889999999999999999999999999888877776655 68899999999999999999 67887777766654
Q ss_pred hc
Q 002814 725 HF 726 (877)
Q Consensus 725 ~~ 726 (877)
+.
T Consensus 147 kl 148 (153)
T d2fbna1 147 KL 148 (153)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=6.6e-06 Score=89.77 Aligned_cols=228 Identities=10% Similarity=-0.012 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002814 174 KAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNS 253 (877)
Q Consensus 174 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 253 (877)
+|.+.|++++...+ +....+..+..++...|++++| |++++...+. ....++.....+ ...+..+++.++.
T Consensus 4 eA~q~~~qA~~l~p---~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~~e~~Lw--~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVLKA---DMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKKVEQDLW--NHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHHG---GGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHTHHHHHH--HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC---CCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHhHHHHHH--HHHHHHHHHHHHH
Confidence 67788888887653 2333555666777777777765 6666654211 111222111111 1224566777777
Q ss_pred HHhCCCCCCHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 002814 254 MKRYNLKPNLVTYNAVIDAC--GKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGID 331 (877)
Q Consensus 254 m~~~g~~p~~~~~~~ll~~~--~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 331 (877)
..+....++..-....+..+ ...+ .++.++..++...+.. ..+...+..+...+.+.|+.++|...++...+..
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~-~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASG-FYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHH-HHHHHHHHHTC--------------------------------CCHHHHHH--
T ss_pred hcccccCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence 66543333322222111111 1122 3444444444333321 1234456666667777777777777766655431
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002814 332 QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVL 411 (877)
Q Consensus 332 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li 411 (877)
...++..|.+.+...|++++|+..|++..+.... +...|+.|...|...|+..+|+..|.+..... .|-..++..|.
T Consensus 151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~ 227 (497)
T d1ya0a1 151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQ 227 (497)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHH
Confidence 1345666777777777777777777777665322 45677777777777777777777777776654 45566666666
Q ss_pred HHHHHc
Q 002814 412 SIYAKL 417 (877)
Q Consensus 412 ~~~~~~ 417 (877)
..+.+.
T Consensus 228 ~~~~~~ 233 (497)
T d1ya0a1 228 KALSKA 233 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=4.8e-06 Score=90.96 Aligned_cols=226 Identities=9% Similarity=-0.015 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCCHHHHHHHHHH
Q 002814 211 LAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNL-VTYNAVIDACGKGGVDFKHVVEIFDD 289 (877)
Q Consensus 211 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~~a~~~~~~ 289 (877)
+|.+.|+++.+.... .+.++..+..+|...|++++| |+++... .|+. ..++.. ..+.+. .+..+++.++.
T Consensus 4 eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e-~~Lw~~--~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVE-QDLWNH--AFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHH-HHHHHH--HTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHH-HHHHHH--HHHHHHHHHHH
Confidence 678888888764221 244566677777777888776 6666542 2221 112111 111121 24556667776
Q ss_pred HHHCCCCCCHHHHHHHH--HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCC
Q 002814 290 MLRNGVQPDRITFNSLL--AVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISP 367 (877)
Q Consensus 290 m~~~g~~p~~~t~~~ll--~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 367 (877)
..+..-.++..-....+ ..+...+.++.++..+....+.. ..+...+..+...+.+.|+.++|...+.......
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 66543333322211111 11222334444444444333321 2244556666677777777777776665544321
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (877)
Q Consensus 368 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 447 (877)
...++..+...+...|++++|+..|++..+.. +-+...|+.|...+...|+..+|+..|.+.+... +|...++..|..
T Consensus 151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~ 228 (497)
T d1ya0a1 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 12455566667777777777777777766653 3345667777777777777777777777776655 556666666666
Q ss_pred HHHH
Q 002814 448 GYGK 451 (877)
Q Consensus 448 ~~~~ 451 (877)
.|.+
T Consensus 229 ~~~~ 232 (497)
T d1ya0a1 229 ALSK 232 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: SMR domain-like family: Smr domain domain: Nedd4-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=3.6e-05 Score=59.78 Aligned_cols=78 Identities=24% Similarity=0.231 Sum_probs=58.7
Q ss_pred cchhhccchHHHHHHHHHHHHHHHHhhhccCCCCCceeEEeeccccccccCchhhHHHHHHHHhcCCCCcccccCCCceE
Q 002814 753 CLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAPFWVANCNLGRF 832 (877)
Q Consensus 753 ~~dl~~~s~g~a~~~~~~w~~~~~~~~~~~~~~p~~~~i~~g~g~h~~~~~~~~~~~~i~~~l~~l~~pf~~~~~~~g~~ 832 (877)
.+|||.+++.+|..++..|+.+.+....... -..++.|+||.|+||. .|.+.++.+|...|++-+-.| ...|.|+|
T Consensus 3 ~iDLHG~~~~eA~~~l~~~l~~~~~~~~~~~-~~~~l~IItG~G~hS~-~g~~~lk~~V~~~L~~~~~~~--~e~~~G~~ 78 (83)
T d2d9ia1 3 VLDLHGLHVDEALEHLMRVLEKKTEEFKQNG-GKPYLSVITGRGNHSQ-GGVARIKPAVIKYLISHSFRF--SEIKPGCL 78 (83)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEEECCCSGGGT-TCTTCHHHHHHHHHHHTTCCE--ECCSTTCE
T ss_pred eEECCCCCHHHHHHHHHHHHHHHHHhhhhcC-CceEEEEEECCCCCCC-CCcchHHHHHHHHHHHCCCce--ecCCCcEE
Confidence 5899999999999999999877553322211 2456899999999984 345678899999998865444 45678888
Q ss_pred Ee
Q 002814 833 IS 834 (877)
Q Consensus 833 ~~ 834 (877)
+.
T Consensus 79 ~V 80 (83)
T d2d9ia1 79 KV 80 (83)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.74 E-value=5e-05 Score=66.88 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=75.5
Q ss_pred HhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHhcCCcchhHHHHHhhccc--
Q 002814 624 QEILCILGVFQKMHKLKIKP-NVVTFSAILNACSR----------CNSFEDASMLLEELRLFDNQVYGVAHGLLMGYR-- 690 (877)
Q Consensus 624 ~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~----------~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~-- 690 (877)
+.+++|+..|++.++ +.| |..++..++.+|.. .+.+++|++.|+++++++|++..+.+++...+.
T Consensus 11 ~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 11 LLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence 378899999999988 668 55567778888764 355688999999999999999888887754431
Q ss_pred ----------cchHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 002814 691 ----------DNIWVQALSLFDEVKLMDSSTASAFYNALTDML 723 (877)
Q Consensus 691 ----------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 723 (877)
.+.+++|.+.|+++++++| .+..++..|....
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~l~P-~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVDEQP-DNTHYLKSLEMTA 130 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccccCC-CHHHHHHHHHHHH
Confidence 2467899999999999999 6777776665443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.70 E-value=0.00056 Score=61.69 Aligned_cols=98 Identities=11% Similarity=-0.094 Sum_probs=53.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCC------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKND------------QGKLASAMISILGRLGKVDLAKNIFETALNEGYG 225 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 225 (877)
.+......+.+.|+|.+|+..|..++..-..... ...+|..+..+|.+.|++++|+..++.++...+
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p- 95 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS- 95 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc-
Confidence 3445677788999999999999988764211111 112233344445555555555555555554432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002814 226 NTVYAFSALISAYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 226 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 256 (877)
.+..+|..+..+|...|++++|+..|+++..
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2444555555555555555555555555544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=0.00028 Score=60.36 Aligned_cols=94 Identities=13% Similarity=0.188 Sum_probs=69.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC-----HHHHHH
Q 002814 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG-NT-----VYAFSA 233 (877)
Q Consensus 160 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~-----~~~~~~ 233 (877)
..+...+.+.|+|++|++.|..++..+ |.+..++..+..+|.+.|++++|.+.++++++.... +. ..+|..
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 345667888888888888888888875 455678888888888888888888888888764211 01 235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 002814 234 LISAYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~ 256 (877)
+...+...+++++|++.|++...
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 77777778888888888877665
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.63 E-value=0.00073 Score=59.76 Aligned_cols=68 Identities=22% Similarity=0.152 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 002814 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV 545 (877)
Q Consensus 475 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 545 (877)
.+|+.+..+|.+.|++++|++.+++.++.. +.+..+|..+..++...|++++|+..|++..+. .|+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~ 135 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNL 135 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCH
Confidence 456667777777788888888777777765 236777777777777788888888877777763 45433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.55 E-value=0.00063 Score=61.85 Aligned_cols=127 Identities=11% Similarity=0.070 Sum_probs=83.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002814 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (877)
Q Consensus 159 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 238 (877)
.......+...|++++|.+.|..++........ ......+.+...-..+... ...++..++..+
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l------------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~ 77 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVL------------DDLRDFQFVEPFATALVED----KVLAHTAKAEAE 77 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTT------------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCccccc------------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 344566788899999999999999986422111 0011111111111122111 345677788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 002814 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR-----NGVQPDRITFN 303 (877)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~-----~g~~p~~~t~~ 303 (877)
.+.|++++|+..++++.+.... +...|..++.++.+.| +.++|++.|+++.+ .|+.|...+-.
T Consensus 78 ~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~G-r~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 78 IACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSD-RQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 8888888888888888875443 7788888888888888 88888888888743 58888876543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.54 E-value=0.00012 Score=64.30 Aligned_cols=73 Identities=16% Similarity=-0.031 Sum_probs=52.6
Q ss_pred HHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRL----------GKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
|-+.+.|++|++.|+.++... |.+..++..+..+|... +.+++|+..|+++++..+. +..+|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~---P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC---CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHH
Confidence 344566899999999999886 56667888888877644 4456788888888776543 677777777
Q ss_pred HHHHhcC
Q 002814 236 SAYGRSG 242 (877)
Q Consensus 236 ~~~~~~g 242 (877)
.+|...|
T Consensus 83 ~~y~~~g 89 (145)
T d1zu2a1 83 NAYTSFA 89 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHcc
Confidence 7776554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.49 E-value=0.00064 Score=61.34 Aligned_cols=111 Identities=6% Similarity=-0.020 Sum_probs=54.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002814 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (877)
Q Consensus 159 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 238 (877)
+......+...|++++|++.|..++...... ...........+ . +.....|..+..+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~--------------~~~~~~~~~~~~----~----~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS--------------RAAAEDADGAKL----Q----PVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------HHHSCHHHHGGG----H----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh--------------hhhhhhHHHHHh----C----hhhHHHHHHHHHHH
Confidence 3345666778999999999998887532100 000000000000 0 01233444445555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Q 002814 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN 293 (877)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~ 293 (877)
.+.|++++|+..|+++.+.... +..+|..+..++...| ++++|++.|++.++.
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~-~~~~A~~~~~~al~l 140 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLK-EYDQALADLKKAQEI 140 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred Hhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHcc-CHHHHHHHHHHHHHh
Confidence 5555555555555555543322 4445555555555555 555555555555543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.26 E-value=0.00024 Score=69.27 Aligned_cols=123 Identities=14% Similarity=0.067 Sum_probs=73.3
Q ss_pred HHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 002814 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQ 245 (877)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 245 (877)
..+.|++++|+..|+.+++.. |.+...+..++.+|+..|++++|.+.|+.+.+..+. +...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~---P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccH
Confidence 456788888888888888875 566778888888888888888888888888776432 4555555555544333333
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Q 002814 246 EAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN 293 (877)
Q Consensus 246 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~ 293 (877)
++..-+......+-.++...+......+...| +.++|.++++++.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~g-d~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQ-DYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhc
Confidence 32222111111111112233333444455666 777777777776653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.18 E-value=0.003 Score=57.14 Aligned_cols=127 Identities=13% Similarity=0.057 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 002814 196 ASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK 275 (877)
Q Consensus 196 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 275 (877)
...........|++++|.+.|.+++..-.. +. +......+.+...-..+.. -....+..+...+.+
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG-~~---------l~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRG-PV---------LDDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCS-ST---------TGGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-cc---------cccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 344556788999999999999999875211 10 0011111111122222222 134577888999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 002814 276 GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVH-----RGIDQDIFTYN 338 (877)
Q Consensus 276 ~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~ 338 (877)
.| ++++|+..++++++.... +...|..++.+|.+.|+.++|++.|+++.+ .|+.|...+-.
T Consensus 80 ~g-~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 80 CG-RASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp TT-CHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred CC-CchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 99 999999999999987443 788999999999999999999999999754 59999876533
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.00 E-value=0.0047 Score=54.43 Aligned_cols=94 Identities=17% Similarity=0.112 Sum_probs=65.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHccccCCC---------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCC-
Q 002814 163 LRELGNRGEWSKAIQCFAFAVKREERKND---------QGKLASAMISILGRLGKVDLAKNIFETALNE-----GYGNT- 227 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~~~- 227 (877)
...+.+.|+|++|++.|..++......++ ...+|+.+..+|.+.|++++|.+.++++++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 44566789999999999999876543332 2356777888888888888888888887652 11111
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002814 228 ----VYAFSALISAYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 228 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 256 (877)
..+++.+..+|...|++++|+..|++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22456667777777777777777777653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.0024 Score=50.82 Aligned_cols=79 Identities=14% Similarity=0.034 Sum_probs=58.8
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccC----CChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 002814 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERK----NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYA 230 (877)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 230 (877)
+++++..+...+.+.|++++|+..|+.+++..... .....++..+..++.+.|++++|+..++++++..+. +..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHH
Confidence 56777778888999999999999999988764321 223457778888888888888888888888886543 4555
Q ss_pred HHHH
Q 002814 231 FSAL 234 (877)
Q Consensus 231 ~~~l 234 (877)
++.+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.93 E-value=0.0016 Score=63.24 Aligned_cols=122 Identities=8% Similarity=0.023 Sum_probs=64.4
Q ss_pred HcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 274 GKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLA 353 (877)
Q Consensus 274 ~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 353 (877)
.+.| ++++|+..+++.++.... |...+..|...++..|++++|.+.|+...+... -+...+..+...+...+..+++
T Consensus 7 L~~G-~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P-~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEG-QLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFP-EYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTT-CHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCC-CHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhccccHHH
Confidence 3456 677777777777665433 556666677777777777777777777666431 1244444444444333333333
Q ss_pred HHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 354 FEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (877)
Q Consensus 354 ~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (877)
..-+......+-.++...+......+...|+.++|.+++.++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 222222111111222333344455566667777777766666543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.84 E-value=0.0059 Score=53.80 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=62.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-C----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-----CCCCC--
Q 002814 482 DVYSKGGLYKEAMQIFREFKQAGLK-A----------DVVLYSALIDALCKNGLVESAVSLLDEMTKE-----GIRPN-- 543 (877)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~m~~~g~~-p----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-- 543 (877)
..+.+.|++++|++.|++.++.... | ....|+.+..+|.+.|++++|+..+++.++. ...++
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3344556666666666665542100 1 1356677777777888888887777776642 12222
Q ss_pred ---HHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 544 ---VVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 544 ---~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
...+..+..+|...|++++|+..++++++..++.
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 1246677888999999999999999999887654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.69 E-value=0.0023 Score=50.98 Aligned_cols=69 Identities=12% Similarity=0.033 Sum_probs=38.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCc-------chhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHH
Q 002814 650 AILNACSRCNSFEDASMLLEELRLFDNQ-------VYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNAL 719 (877)
Q Consensus 650 ~ll~a~~~~g~~~eA~~~~~~~~~~~~~-------~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 719 (877)
.++..+.+.|++++|...|+++.+..+. ...+.+++...+ +.|++++|++.++++++++| .+..+++.+
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P-~~~~a~~Nl 86 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP-EHQRANGNL 86 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc-CCHHHHHHH
Confidence 4666677777777777777776543221 112233333322 45666666666666666666 444444444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.84 E-value=0.11 Score=43.73 Aligned_cols=81 Identities=12% Similarity=-0.042 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCC
Q 002814 453 GKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK----NGL 524 (877)
Q Consensus 453 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~ 524 (877)
.+.++|++.+++..+.| +......|...|.. ..+.++|.++|++..+.| +......|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34555555555555544 34444444444443 234566666666665554 34444445444444 235
Q ss_pred hHHHHHHHHHHHHCC
Q 002814 525 VESAVSLLDEMTKEG 539 (877)
Q Consensus 525 ~~~A~~~~~~m~~~g 539 (877)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 566666666665554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.57 E-value=0.14 Score=42.91 Aligned_cols=110 Identities=10% Similarity=-0.026 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 002814 384 RLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK----QGKYDEVR 459 (877)
Q Consensus 384 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 459 (877)
++++|+++|++..+.|. ...+..|.. ....+.++|+..+++..+.| +...+..|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 45566666666665551 122222221 23356677777777777655 45555556665554 34677888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 002814 460 RMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAG 504 (877)
Q Consensus 460 ~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g 504 (877)
+.|++..+.| +......|...|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 8888877765 55566666666665 357788888888877766
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.55 E-value=1.6 Score=44.88 Aligned_cols=353 Identities=11% Similarity=0.032 Sum_probs=156.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
-+..+.+.++|++.+..|. ..+.+...-...+.++.+.|+.+.|...+..+-..|.. ....+..+...+.+.
T Consensus 78 ~l~~L~~~~~w~~~~~~~~-------~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~ 149 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFSP-------EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRAS 149 (450)
T ss_dssp HHHHHHHTTCHHHHHHHCC-------SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHT
T ss_pred HHHHHHhccCHHHHHHhcc-------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhc
Confidence 4566777788776554432 12344455556677777888888887777766555432 233444444444443
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 002814 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNL 321 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 321 (877)
|.+ +...+-.-+......| +...|..+...+-. ........++........+...
T Consensus 150 ~~l-----------------t~~~~~~R~~~~l~~~-~~~~a~~l~~~l~~----~~~~~~~a~~~l~~~p~~~~~~--- 204 (450)
T d1qsaa1 150 GKQ-----------------DPLAYLERIRLAMKAG-NTGLVTVLAGQMPA----DYQTIASAIISLANNPNTVLTF--- 204 (450)
T ss_dssp TCS-----------------CHHHHHHHHHHHHHTT-CHHHHHHHHHTCCG----GGHHHHHHHHHHHHCGGGHHHH---
T ss_pred CCC-----------------CHHHHHHHHHHHHHcC-ChhhHHHHHhhCCh----hHHHHHHHHHHHHhChHhHHHH---
Confidence 332 2222212222222333 44444443332110 0112222233222221111111
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHchhCCCCCCHHHHHHHHH----HHHHcCCHHHHHHHHHHH
Q 002814 322 FNEMVHRGIDQDIFTYNTLLDAICK--GAQMDLAFEIMAEMPAKNISPNVVTYSTMID----GYAKAGRLDDALNMFSEM 395 (877)
Q Consensus 322 ~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~----~~~~~g~~~~A~~~~~~m 395 (877)
.... ..+......+..++.+ ..+.+.|..++......... +...+..+-. .+...+..+.+...+...
T Consensus 205 ---~~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~ 278 (450)
T d1qsaa1 205 ---ARTT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDA 278 (450)
T ss_dssp ---HHHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHH
T ss_pred ---HhcC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhh
Confidence 1111 1122222222222222 23455566655554432211 2222222111 122234455566666555
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 002814 396 KFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLL 475 (877)
Q Consensus 396 ~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 475 (877)
...+ .+.....-.+......+++..+...+..|.... ........=+..++...|+.++|...|...... ++
T Consensus 279 ~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~-- 350 (450)
T d1qsaa1 279 IMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG-- 350 (450)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--
T ss_pred cccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--
Confidence 5442 233333334444555667776666666654321 122333344556666777777777777766532 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVL---YSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (877)
Q Consensus 476 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 552 (877)
.|.-|... +.|..-. +-..-.... ...... -..-+..+...|+..+|...+..+... -+......+..
T Consensus 351 fYG~LAa~--~Lg~~~~---~~~~~~~~~-~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~ 421 (450)
T d1qsaa1 351 FYPMVAAQ--RIGEEYE---LKIDKAPQN-VDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLAR 421 (450)
T ss_dssp HHHHHHHH--HTTCCCC---CCCCCCCSC-CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHH
T ss_pred hHHHHHHH--HcCCCCC---CCcCCCCcc-HHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHH
Confidence 22222111 1111000 000000000 000000 012244566777777777777777643 24445556666
Q ss_pred HHhhcCChhhhHHHHHHH
Q 002814 553 AFGRSATTECTVDDVERD 570 (877)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~ 570 (877)
...+.|.++.|+....++
T Consensus 422 lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 422 YAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHTTCHHHHHHHHHHT
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 677777777777666554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.84 E-value=1.2 Score=35.53 Aligned_cols=139 Identities=11% Similarity=0.116 Sum_probs=74.4
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002814 310 SRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDAL 389 (877)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~ 389 (877)
.-.|.+++..+++.+.... .+..-||.+|--....-+-+...++++.+-+. .|. ...+++....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHH
Confidence 3456677777777776664 25555666555555555555555555554332 111 1122222222
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002814 390 NMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC 469 (877)
Q Consensus 390 ~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 469 (877)
..+-.+ .-+..-+..-++.+.+.|+-|+-.++++.+.+.+ ++++...-.+..+|.+.|...++.+++.+.-+.|
T Consensus 77 ~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 222111 1122333444556666677777777776665554 5666666667777777777777777777666665
Q ss_pred C
Q 002814 470 V 470 (877)
Q Consensus 470 ~ 470 (877)
+
T Consensus 151 ~ 151 (161)
T d1wy6a1 151 E 151 (161)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.68 E-value=0.12 Score=42.17 Aligned_cols=49 Identities=10% Similarity=-0.029 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcCCcch-hHHHHHhhcc-ccchHHHHHHHHHHHhhcCC
Q 002814 661 FEDASMLLEELRLFDNQVY-GVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 661 ~~eA~~~~~~~~~~~~~~~-~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (877)
.++|+.+|+++.+.+|... ..++.+..++ +.|++++|.+.++++++.+|
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP 104 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 104 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3455555555554444332 3334443333 44555555555555555555
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.39 E-value=3.5 Score=32.88 Aligned_cols=66 Identities=23% Similarity=0.253 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 002814 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIR 541 (877)
Q Consensus 475 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 541 (877)
..++.-++.+.+.|+-++-.++++.+.+.+ +++....-.+..+|-+.|...++-+++.++-+.|++
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 344455556666666666666666655533 456666666666666666666666666666666543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=88.50 E-value=14 Score=37.26 Aligned_cols=340 Identities=11% Similarity=0.010 Sum_probs=179.7
Q ss_pred HHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 002814 143 GDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE 222 (877)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (877)
..++..+...+.+.+.-+..+.++.+.|+-.+|.+.+..+-..+...+. .+..+...+.+.|.
T Consensus 89 ~~~~~~~~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~---~c~~l~~~~~~~~~-------------- 151 (450)
T d1qsaa1 89 RGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN---ACDKLFSVWRASGK-------------- 151 (450)
T ss_dssp HHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT---HHHHHHHHHHHTTC--------------
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch---HHHHHHHHHHhcCC--------------
Confidence 3455555544445555556777778888888888877766655533332 34444444433332
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002814 223 GYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITF 302 (877)
Q Consensus 223 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~ 302 (877)
.+...+-.-+......|++..|..+...+.. .........+.....-. .+.... ... ..+....
T Consensus 152 ---lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~~p~----~~~~~~---~~~--~~~~~~~ 215 (450)
T d1qsaa1 152 ---QDPLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAIISLANNPN----TVLTFA---RTT--GATDFTR 215 (450)
T ss_dssp ---SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHHCGG----GHHHHH---HHS--CCCHHHH
T ss_pred ---CCHHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHhChH----hHHHHH---hcC--CCChhhh
Confidence 2333444455555666777777777665432 12333344444333222 222211 111 2233333
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHH
Q 002814 303 NSLLAVCSR--GGLWEAARNLFNEMVHRGIDQDIFTYNTLLD----AICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376 (877)
Q Consensus 303 ~~ll~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li 376 (877)
..+..++.+ ..+.+.+..++......... +..-+..+-. .+...+..+.+...++.....+. +......++
T Consensus 216 ~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~ 292 (450)
T d1qsaa1 216 QMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRV 292 (450)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHH
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHH
Confidence 333333322 24667777777776554222 2222222222 22334566777777766655432 444444455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 002814 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYD 456 (877)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 456 (877)
......+++..+...+..|.... .-.....--+..++...|+.++|...|..+.. .++ |..++.+ .+.|..-
T Consensus 293 ~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~---fYG~LAa-~~Lg~~~ 364 (450)
T d1qsaa1 293 RMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG---FYPMVAA-QRIGEEY 364 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS---HHHHHHH-HHTTCCC
T ss_pred HHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC---hHHHHHH-HHcCCCC
Confidence 55666778888888877764321 22334445566777888888888888887764 233 3333322 1222100
Q ss_pred HHHHHHHHHHHCC--CCCC-HHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 002814 457 EVRRMFEQMKADC--VSPN-LLT---YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVS 530 (877)
Q Consensus 457 ~A~~~~~~m~~~g--~~p~-~~t---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 530 (877)
. +.... ..++ ... -...+..+...|....|...|..+... .+......+.....+.|.++.|+.
T Consensus 365 ~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~ 434 (450)
T d1qsaa1 365 E-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQ 434 (450)
T ss_dssp C-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred C-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHH
Confidence 0 00000 0000 000 112345566788899998888888753 356677777788888899998887
Q ss_pred HHHHHH
Q 002814 531 LLDEMT 536 (877)
Q Consensus 531 ~~~~m~ 536 (877)
...+..
T Consensus 435 a~~~~~ 440 (450)
T d1qsaa1 435 ATIAGK 440 (450)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 776653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.66 E-value=3.6 Score=32.99 Aligned_cols=64 Identities=11% Similarity=-0.030 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 473 NLLTYSTLIDVYSKGG---LYKEAMQIFREFKQAGLKAD-VVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
...|--....++.+.. +.++++.+|+++.+.+. .+ ...+..|.-+|.+.|++++|.+.++.+++
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p-~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3444444444444432 33455555555554321 12 23444445555666666666666666655
|