Citrus Sinensis ID: 002861

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870---
Protein Sequence
MTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTFCGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLTLATWLMGLSDHKTGFLLPLWKNSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCEEILQKELSGVDICKDILDLCPRLQDQNSKILPKSRAYQAQVDLLRACKEETTASELEHKVWAAVADETASAIKYGFREYLLEPLSRGSSAYQNKNDDGFVDHPFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNSEVYNWNIYLES
Secondary Structure (PSIPRED)
cccccEEEccccccccccccEEEEEEccccccccccEEEEEcccccccccccccccccccccccHHHHHHcccccccccEEEEEEEEEEcHHHHHHHHHHHccccccHHHHHccccEEEcHHHHHHHcccccccccccccccHHHHHHHccccEEEEEcccccccccccHHHHHHHHccccccccccccccccccccccccccccEEEEEEEccccEEccccEEEEcEEcccEEEccccEEEcccccccccccccccccEEEcccEEEEEEEEccccEEEEEEEccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccHHHcccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEccEEEEEccccccccccccccccEEEEEEcccccEEEEEEccccccccEEEEEcccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccEEcccccEEEEEcccccEEEEEEEEcccHHHHHHHccEEEEEEccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccEEEEcccccccEEEEEEccHHHHHHHHHHHHHcccccEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccEEEEccccccccccccEEEEEEcccHHHHHHccEEEEcccccccccccHHHHHHHHccccHHHHHHcccccccccEEEEEEEEEEcHHHHHHHHHHcccccccHHccccccHHHHHHHHHHHHccccHHHHHcccccccccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccHHccccccccHcHEEEEEEEEEEccccEEEcccEEEEEcEccccEEEcccEEEEEEEcccccccccccccEEEccccEEEEEEEccccccEEEEEEccccccccccccccccccccHHHHHHHccccHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEccEEEEEcccccccccHHHHcccEEEEEEEEccccccEEEEEccccccEEEEEEccccEEEEccHHHHHcccccccccHHHHHHHHHHccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccHEEEccccEEEEEccccccEEEEEcccccHHHHHHHHHcEEEEEcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccHEEEEEccHHHHHHHHHHHHHHcccccEEEEEEEEEcc
Coil and Loop (DISEMBL)
mtgdvlpcfdastmilpedasciitvpitldiasnHGVIVAAKDGILNENYALSLVDdllqkpnvdelaknhailDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWvpakhdwlmLRPLGKELVSKLGKQRMFSYCAYELLFLhfgtssevldhlsgdvsglvgrrhlcsipattvSDIAASAVVLSSKIahgvsigedsliydsnissgiqigSLSIvvgtnfpeeagstaedsfrfmlpdrhclwevplvgctERVLVYCglhdnpknsltkdgtfcgkpwqkvwhdlgiqesdlwsstgsqekclwnakifpilSYSEMLTLATWLMglsdhktgfllplwknsrRVSLEELHRsidfsemctgssnhQADLAAGIAKACINYGMLGRNLSQLCEEILQKELSGVDICKDILDLcprlqdqnskilpksrAYQAQVDLLRACKEETTASELEHKVWAAVADETASAIKYGFREYLLeplsrgssayqnknddgfvdhpfqprtvkvelpvridfaggwsdtppwsleraGCVLNVAISLesslpigtiiettkmsgvlisddagnqlhiedltpiatpfdhndpfrLVKSALLVTGVIHEKLIESMGLQIrtwanvprgsglgtSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMgtgggwqdqigglypgikftssfpgiplrlqvipllaspQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGrdalmncdvdELGKIMLEAWRLHqeldphcsnefVDRLfafadpyccgyklvgaggGGFALLLAKDAESATELRRMLEKdsnfnsevynwniyles
Flexible Loop (DISEMBL)
MTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTFCGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLTLATWLMGLSDHKTGFLLPLWKNSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCEEILQKELSGVDICKDILDLCPRLQdqnskilpksrAYQAQVDLLRACKEETtaselehkvWAAVADETASAIKYGFREYLLEPLSRGSSAYQNKNDDGFVDHPFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQitdgdqsnENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESATELRRMlekdsnfnsevynwniyles
Low Complexity Region (SEG)
MTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNissgiqigslsivvgTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTFCGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLTLATWLMGLSDHKTGFLLPLWKNSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCEEILQKELSGVDICKDILDLCPRLQDQNSKILPKSRAYQAQVDLLRACKEETTASELEHKVWAAVADETASAIKYGFREYLLEPLSRGSSAYQNKNDDGFVDHPFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMgtgggwqdqiggLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVgaggggfalllaKDAESATELRRMLEKDSNFNSEVYNWNIYLES
Disordered region (IsUnstruct)
****VLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIG******************LSIVVGTNF*********DSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTFCGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLTLATWLMGLSDHKTGFLLPLWKNSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCEEILQKELSGVDICKDILDLCPRLQDQNSKILPKSRAYQAQVDLLRACKEETTASELEHKVWAAVADETASAIKYGFREYLLEPLS************GFVDHPFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTW*************ILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDA**************NFNSEVYNWNIYL**
Disordered Region (DISOPRED)
MTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWVPAKHDWLM**PLGKELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRH***************AVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTFCGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLTLATWLMGL***********WKNSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCEEILQKELSGVDICKDILDL****************AYQAQVD************EL**KVWAAVA********YGFREYLLEPLSRGS*A************PFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNSEVYNWNIYL**
Disordered Region (DISEMBL)
MTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTFCGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLTLATWLMGLSDHKTGFLLPLWKNSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCEEILQKELSGVDICKDILDLCPRLQDQNSKILPKSRAYQAQVDLLRACKEETTASELEHKVWAAVADETASAIKYGFREYLLEPLSRGSSAYQNKNDDGFVDHPFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNSEVYNWNIYLES
Disordered Region (DISPRO)
*TGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTFCGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLTLATWLMGLSDHKTGFLLPLWKNSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCEEILQKELSGVDICKDILDLCPRLQDQNSKILPKSRAYQAQVDLLRACKEETTASELEHKVWAAVADETASAIKYGFREYLLEPLSRGSSAYQNKNDDGFVDHPFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNSEVYNWNIYLES
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTFCGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLTLATWLMGLSDHKTGFLLPLWKNSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCEEILQKELSGVDICKDILDLCPRLQDQNSKILPKSRAYQAQVDLLRACKEETTASELEHKVWAAVADETASAIKYGFREYLLEPLSRGSSAYQNKNDDGFVDHPFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNSEVYNWNIYLES
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	873	2.2.26 [Sep-21-2011]
Q9LNJ9	1055	Bifunctional fucokinase/f	yes	no	0.986	0.816	0.746	0.0
Q8N0W3	1084	L-fucose kinase OS=Homo s	yes	no	0.398	0.321	0.316	2e-40
Q9LY82	366	Probable glucuronokinase	no	no	0.221	0.527	0.247	7e-06
Q8U0F3	334	Mevalonate kinase OS=Pyro	yes	no	0.241	0.631	0.232	1e-05
Q5JJC6	337	Mevalonate kinase OS=Pyro	yes	no	0.239	0.620	0.244	4e-05
Q93ZC9	362	Glucuronokinase 1 OS=Arab	no	no	0.208	0.502	0.245	0.0001
Q9V187	335	Mevalonate kinase OS=Pyro	yes	no	0.233	0.608	0.232	0.0002
Q58487	312	Mevalonate kinase OS=Meth	yes	no	0.221	0.618	0.209	0.0003
C6A3T5	333	Mevalonate kinase OS=Ther	yes	no	0.246	0.645	0.240	0.0007
O59291	335	Mevalonate kinase OS=Pyro	yes	no	0.234	0.611	0.227	0.0008

>sp|Q9LNJ9|FKGP_ARATH Bifunctional fucokinase/fucose pyrophosphorylase OS=Arabidopsis thaliana GN=FKGP PE=1 SV=2

 Score = 1344 bits (3478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 651/872 (74%), Positives = 744/872 (85%), Gaps = 11/872 (1%)

Query: 1    MTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLL 60
            MTGDVLPCFDA  M LPEDA+ I+TVPITLDIASNHGVIV +K   L E+Y +SLV+DLL
Sbjct: 190  MTGDVLPCFDAFKMTLPEDAASIVTVPITLDIASNHGVIVTSKSESLAESYTVSLVNDLL 249

Query: 61   QKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSL 120
            QKP V++L K  AIL DGR LLDTGII+ RG+AW +LV L CSC PM+ EL+ S KEMSL
Sbjct: 250  QKPTVEDLVKKDAILHDGRTLLDTGIISARGRAWSDLVALGCSCQPMILELIGSKKEMSL 309

Query: 121  YEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGD 180
            YEDLVAAWVP++HDWL  RPLG+ LV+ LG+Q+M+SYC Y+L FLHFGTSSEVLDHLSGD
Sbjct: 310  YEDLVAAWVPSRHDWLRTRPLGELLVNSLGRQKMYSYCTYDLQFLHFGTSSEVLDHLSGD 369

Query: 181  VSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSI 240
             SG+VGRRHLCSIPATTVSDIAAS+V+LSS+IA GVSIGEDSLIYDS +S  +QIGS SI
Sbjct: 370  ASGIVGRRHLCSIPATTVSDIAASSVILSSEIAPGVSIGEDSLIYDSTVSGAVQIGSQSI 429

Query: 241  VVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTF 300
            VVG + P E   T E SFRFMLPDRHCLWEVPLVG   RV+VYCGLHDNPKNS+ KDGTF
Sbjct: 430  VVGIHIPSEDLGTPE-SFRFMLPDRHCLWEVPLVGHKGRVIVYCGLHDNPKNSIHKDGTF 488

Query: 301  CGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLTLATWLMGLSDHKTG 360
            CGKP +KV  DLGI+ESDLWSS  +Q++CLWNAK+FPIL+YSEML LA+WLMGL D +  
Sbjct: 489  CGKPLEKVLFDLGIEESDLWSSYVAQDRCLWNAKLFPILTYSEMLKLASWLMGLDDSRNK 548

Query: 361  FLLPLWKNSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCE 420
              + LW++S+RVSLEELH SI+F EMC GSSNHQADLA GIAKAC+NYGMLGRNLSQLC 
Sbjct: 549  EKIKLWRSSQRVSLEELHGSINFPEMCNGSSNHQADLAGGIAKACMNYGMLGRNLSQLCH 608

Query: 421  EILQKELSGVDICKDILDLCPRLQDQNSKILPKSRAYQAQVDLLRACKEETTASELEHKV 480
            EILQKE  G++ICK+ LD CP+ Q+QNSKILPKSRAYQ +VDLLRAC +E  A ELEHKV
Sbjct: 609  EILQKESLGLEICKNFLDQCPKFQEQNSKILPKSRAYQVEVDLLRACGDEAKAIELEHKV 668

Query: 481  WAAVADETASAIKYGFREYLLEPLSRGSSAYQNKNDDGFVDHP---FQPRTVKVELPVRI 537
            W AVA+ETASA++YGFRE+LLE  S G S  +N      + HP   FQPR  KVELPVR+
Sbjct: 669  WGAVAEETASAVRYGFREHLLE--SSGKSHSENH-----ISHPDRVFQPRRTKVELPVRV 721

Query: 538  DFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDL 597
            DF GGWSDTPPWSLERAG VLN+AI+LE SLPIGTIIETT   G+ I DDAGN+LHIED 
Sbjct: 722  DFVGGWSDTPPWSLERAGYVLNMAITLEGSLPIGTIIETTNQMGISIQDDAGNELHIEDP 781

Query: 598  TPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAV 657
              I TPF+ NDPFRLVKSALLVTG++ E  ++S GL I+TWANVPRGSGLGTSSILAAAV
Sbjct: 782  ISIKTPFEVNDPFRLVKSALLVTGIVQENFVDSTGLAIKTWANVPRGSGLGTSSILAAAV 841

Query: 658  VKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQV 717
            VK LLQI++GD+SNEN+ARLVL+LEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIP+RLQV
Sbjct: 842  VKGLLQISNGDESNENIARLVLVLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPMRLQV 901

Query: 718  IPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNG 777
            +PLLASPQLI EL+QRLLVVFTGQVRLAHQVL KVVTRYLQRDNLLISSIKRLTELAK+G
Sbjct: 902  VPLLASPQLISELEQRLLVVFTGQVRLAHQVLHKVVTRYLQRDNLLISSIKRLTELAKSG 961

Query: 778  RDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFA 837
            R+ALMNC+VDE+G IM EAWRLHQELDP+CSNEFVD+LF F+ PY  G+KLVGAGGGGF+
Sbjct: 962  REALMNCEVDEVGDIMSEAWRLHQELDPYCSNEFVDKLFEFSQPYSSGFKLVGAGGGGFS 1021

Query: 838  LLLAKDAESATELRRMLEKDSNFNSEVYNWNI 869
            L+LAKDAE A ELR+ LE+ + F+ +VYNW+I
Sbjct: 1022 LILAKDAEKAKELRQRLEEHAEFDVKVYNWSI 1053

Bifunctional enzyme involved in the salvage pathway which converts free L-fucose to GDP-L-fucose. The sugar-1-kinase activity has a strict substrate specificity for L-fucose and ATP. The pyrophosphorylase activity has a strict substrate specificity for L-fucose 1-phosphate and GTP.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 3EC: 0

>sp|Q8N0W3|FUK_HUMAN L-fucose kinase OS=Homo sapiens GN=FUK PE=2 SV=2

 Score =  168 bits (425), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 182/367 (49%), Gaps = 19/367 (5%)

Query: 520  VDHPFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKM 579
            V+ P   + V  E P R+DF+GGWSDTPP + E  G VL +A+ ++   PIG        
Sbjct: 698  VELPGPGQWVVAECPARVDFSGGWSDTPPLAYELGGAVLGLAVRVDGRRPIGARARRIPE 757

Query: 580  SGVLIS-----DDAGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIH--------EK 626
              + ++     D+   ++    L  +      + P  L+K+A +  G++H        E+
Sbjct: 758  PELWLAVGPRQDEMTVKIVCRCLADLRDYCQPHAPGALLKAAFICAGIVHVHSELQLSEQ 817

Query: 627  LIESMG--LQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL 684
            L+ + G   ++ TW+ +P GSGLGTSSILA   + AL +        E +   VL LEQ+
Sbjct: 818  LLRTFGGGFELHTWSELPHGSGLGTSSILAGTALAALQRAAGRVVGTEALIHAVLHLEQV 877

Query: 685  MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRL 744
            + TGGGWQDQ+GGL PGIK   S   +PL+++V  +      + +L   LL+V+TG+ RL
Sbjct: 878  LTTGGGWQDQVGGLMPGIKVGRSRAQLPLKVEVEEVTVPEGFVQKLNDHLLLVYTGKTRL 937

Query: 745  AHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELD 804
            A  +LQ V+  +  R   ++ +   L    +   +      +  LG+ +   W   + + 
Sbjct: 938  ARNLLQDVLRSWYARLPAVVQNAHSLVRQTEECAEGFRQGSLPLLGQCLTSYWEQKKLMA 997

Query: 805  PHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNSEV 864
            P C    V R+     P+  G  L GAGGGGF  LL K+ +    L  +L K        
Sbjct: 998  PGCEPLTVRRMMDVLAPHVHGQSLAGAGGGGFLYLLTKEPQQKEALEAVLAKTEGLG--- 1054

Query: 865  YNWNIYL 871
             N++I+L
Sbjct: 1055 -NYSIHL 1060

Takes part in the salvage pathway for reutilization of fucose from the degradation of oligosaccharides.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

EC: 2

>sp|Q9LY82|GLAK2_ARATH Probable glucuronokinase 2 OS=Arabidopsis thaliana GN=GLCAK2 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 5/198 (2%)

Query: 639 ANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVAR--LVLLLEQLMGTGGGWQDQIG 696
            N+PR +GL  SS + +A +  LL   +  QS     R  L+L  E+ +G   G QD++ 
Sbjct: 123 TNIPRQTGLSGSSAIVSAALSCLLDFYNVRQSIRIEVRPNLILNAEKELGIVAGLQDRVA 182

Query: 697 GLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRY 756
            +Y G      F      +  +       + + L   L +++      + +V   V  R+
Sbjct: 183 QVYGGGLVHMDFS--KEHMDKVGYGIYTIMDINLLPPLHLIYAENPSDSGKVHSTVRRRW 240

Query: 757 LQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQEL-DPHCSNEFVDRL 815
           L  D  +ISS+  + +LA+ GR AL+  D   L ++M   + L + +    C       +
Sbjct: 241 LDGDEFIISSMAEIAKLAEEGRTALLKKDYSNLKELMNRNFDLRRSMFGDECLGAMNIEM 300

Query: 816 FAFADPYCCGYKLVGAGG 833
              A       K  G+GG
Sbjct: 301 VEVARKIGAAAKFTGSGG 318

Sugar-1-kinase with a strict substrate specificity for D-glucuronic acid and ATP. Involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. May be also involved in a salvage pathway for glucuronic acid.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q8U0F3|KIME_PYRFU Mevalonate kinase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=mvk PE=3 SV=1

 Score = 52.4 bits (124), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 112/241 (46%), Gaps = 30/241 (12%)

Query: 622 VIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLL 681
           V+ E   +++G+++   + +P G+GLG+S+ +A A + A+ ++   + S E +A++    
Sbjct: 90  VLEEADKKNVGIKVSITSQIPVGAGLGSSAAVAVATIGAVSKLLGLELSKEEIAKMGHKT 149

Query: 682 EQLMGTGGGWQDQIGGLYPGIKFTSSF----PGIPLRLQVIPLLASPQLILELQQRLLVV 737
           E L+      Q    G+ P +     F     G   + + +P +  P         ++V 
Sbjct: 150 ELLV------QGASSGIDPTVSAIGGFIFYEKG---KFEHLPFMELP---------IVVG 191

Query: 738 FTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALM-NCDVDE----LGKI 792
           +TG      +++  V  RY +   L++  ++ + ++ +  +D ++ N D +E    LG +
Sbjct: 192 YTGSSGPTKELVAMVRKRYEEMPELIVPILEAMGKVVEKAKDVILSNVDKEEKFERLGVL 251

Query: 793 MLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGG--FALLLAKDAESATEL 850
           M     L   L    + +  + ++A       G K+ GAGGGG  +AL   K  E AT +
Sbjct: 252 MNINHGLLDALGV-STKKLSELVYAARVAGALGAKITGAGGGGCMYALAPNKQREVATAI 310

Query: 851 R 851
           R
Sbjct: 311 R 311

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q5JJC6|KIME_PYRKO Mevalonate kinase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=mvk PE=3 SV=1

 Score = 50.8 bits (120), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 107/241 (44%), Gaps = 32/241 (13%)

Query: 622 VIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLL 681
           V  E  +   G+ +   + +P G+GLG+S+ +A A + A+ ++   + SNE V +L   +
Sbjct: 93  VREEADVNGKGITVSITSQIPVGAGLGSSAAVAVATIGAVSRLLGLELSNEEVGKLGHKV 152

Query: 682 EQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPL-RLQVIPLLASPQLILELQQRLLVVFTG 740
           E L+      Q    G+ P +     F      + + +P +  P         L+V +TG
Sbjct: 153 ELLV------QGASSGIDPTVSAIGGFIHYQKGKFEHLPFMELP---------LVVGYTG 197

Query: 741 QVRLAHQVLQKVVTRYLQRDNL---LISSIKRLTELAKNGRDALMNCDVDE------LGK 791
                 +++  V   Y +   +   +++S+ RL E A+     ++  D+D       LGK
Sbjct: 198 SSGSTKELVAMVRKNYEEMPEIFEPILNSMGRLVEKARE----VITSDLDRELKFQTLGK 253

Query: 792 IMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGG--FALLLAKDAESATE 849
           +M     L   L    + +  + ++A       G K+ GAGGGG  +AL   K +E AT 
Sbjct: 254 LMNINHGLLDALGV-STKKLSELVYAARTAGALGAKITGAGGGGCMYALAPGKQSEVATA 312

Query: 850 L 850
           +
Sbjct: 313 I 313

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q93ZC9|GLAK1_ARATH Glucuronokinase 1 OS=Arabidopsis thaliana GN=GLCAK1 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 90/208 (43%), Gaps = 26/208 (12%)

Query: 639 ANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVAR--LVLLLEQLMGTGGGWQDQIG 696
            N+PR +GL  SS + +A +  LL   +     +   R  +VL  E+ +G   G QD++ 
Sbjct: 123 TNIPRQTGLSGSSAIVSAALNCLLDFYNVRHLIKVQVRPNIVLSAEKELGIVAGLQDRVA 182

Query: 697 GLYPGI---KFTSSF-----PGI--PLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAH 746
            +Y G+    F+         GI  P+ + ++P L              +++      + 
Sbjct: 183 QVYGGLVHMDFSKEHMDKLGHGIYTPMDISLLPPLH-------------LIYAENPSDSG 229

Query: 747 QVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQEL-DP 805
           +V   V  R+L  D  +ISS+K +  LA+ GR AL+N D  +L ++M   + + + +   
Sbjct: 230 KVHSMVRQRWLDGDEFIISSMKEVGSLAEEGRTALLNKDHSKLVELMNLNFDIRRRMFGD 289

Query: 806 HCSNEFVDRLFAFADPYCCGYKLVGAGG 833
            C       +   A       K  G+GG
Sbjct: 290 ECLGAMNIEMVEVARRVGAASKFTGSGG 317

Sugar-1-kinase with a strict substrate specificity for D-glucuronic acid and ATP. Involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. May be also involved in a salvage pathway for glucuronic acid.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9V187|KIME_PYRAB Mevalonate kinase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=mvk PE=3 SV=1

 Score = 48.5 bits (114), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 104/228 (45%), Gaps = 24/228 (10%)

Query: 632 GLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGW 691
           G+ +   + +P G+GLG+S+ +A A + A+ ++ D + S E +A++   +E L+      
Sbjct: 101 GVSVSITSQIPVGAGLGSSAAVAVATIGAVSKLLDLELSKEEIAKMGHKVELLV------ 154

Query: 692 QDQIGGLYPGIKFTSSFPGIPL-RLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQ 750
           Q    G+ P +     F        + +P +  P         ++V +TG      +++ 
Sbjct: 155 QGASSGIDPTVSAIGGFLYYKQGEFEHLPFVELP---------IVVGYTGSSGSTKELVA 205

Query: 751 KVVTRYLQRDNLLISSIKRLTELAKNGRDALMN-CDVDE----LGKIMLEAWRLHQELDP 805
            V  RY +   L+   ++ + +L    ++ +++  D +E    LG++M     L   L  
Sbjct: 206 MVRRRYEEMPELIEPILESMGKLVDKAKEVIISKLDEEEKFLKLGELMNINHGLLDALGV 265

Query: 806 HCSNEFVDRLFAFADPYCCGYKLVGAGGGG--FALLLAKDAESATELR 851
             + +  + ++A       G KL GAGGGG  +AL   K  E AT ++
Sbjct: 266 -STKKLSELVYAARTAGAIGAKLTGAGGGGCMYALAPGKQREVATAIK 312

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q58487|KIME_METJA Mevalonate kinase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=mvk PE=1 SV=1

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 91/210 (43%), Gaps = 17/210 (8%)

Query: 632 GLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGW 691
           G +I   + +P   GLG+S+ +    +KA+    + +  ++ +A+L  ++E+ +      
Sbjct: 94  GFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASI 153

Query: 692 QDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQK 751
            D     Y GI    +     ++ +    L +         + L+V+  + +     L  
Sbjct: 154 TDTSTITYKGILEIKNNKFRKIKGEFEEFLKNC--------KFLIVYAEKRKKKTAELVN 205

Query: 752 VVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEF 811
            V +   +D +         E+ K   +AL   + ++ GK+M +   L ++L  + S   
Sbjct: 206 EVAKIENKDEIF-------KEIDKVIDEALKIKNKEDFGKLMTKNHELLKKL--NISTPK 256

Query: 812 VDRLFAFADPYCCGYKLVGAGGGGFALLLA 841
           +DR+    + +  G KL GAGGGG  ++L 
Sbjct: 257 LDRIVDIGNRFGFGAKLTGAGGGGCVIILV 286

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|C6A3T5|KIME_THESM Mevalonate kinase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=mvk PE=3 SV=1

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 106/237 (44%), Gaps = 22/237 (9%)

Query: 622 VIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLL 681
           ++ E+  +  G+ +   + +P G+GLG+S+ +A A + A+ ++   + + E VA+L   +
Sbjct: 89  LVMEEAEKQKGVTVSITSQIPVGAGLGSSAAVAVATIGAVSRLFGLELTPEEVAKLGHKV 148

Query: 682 EQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQ 741
           E L          + G   GI  T S  G  L  Q     + P  ++EL   ++V +TG 
Sbjct: 149 ELL----------VQGASSGIDPTVSAIGGFLYYQKGSFESLP--VVELP--IVVGYTGS 194

Query: 742 VRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALM-----NCDVDELGKIMLEA 796
                +++ KV   Y +   ++   +  +  L +  R+ ++           LG +M   
Sbjct: 195 SGSTKELVAKVRKNYEEMPEIIDPILNSMGRLVEKAREVILAEYDKEIKFKRLGTLMNIN 254

Query: 797 WRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGG--FALLLAKDAESATELR 851
             L   L    +    D ++A  +    G K+ GAGGGG  +AL   K +E AT ++
Sbjct: 255 HGLLDALGV-STKSLSDLVYASREAGALGAKITGAGGGGCMYALAPEKQSEVATAIK 310

Thermococcus sibiricus (strain MM 739 / DSM 12597) (taxid: 604354)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|O59291|KIME_PYRHO Mevalonate kinase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=mvk PE=3 SV=1

 Score = 46.6 bits (109), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 105/229 (45%), Gaps = 24/229 (10%)

Query: 631 MGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGG 690
           +G+ +   + +P G+GLG+S+ +A A + A+ ++   + S E +A+L   +E L+     
Sbjct: 100 VGIDVSITSQIPVGAGLGSSAAVAVATIGAVSRLLGLELSKEEIAKLGHKVELLV----- 154

Query: 691 WQDQIGGLYPGIKFTSSFPGIPL-RLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVL 749
            Q    G+ P +     F      + + +P +  P         ++V +TG      +++
Sbjct: 155 -QGASSGIDPTVSAVGGFLYYKQGKFEPLPFMELP---------IVVGYTGSTGSTKELV 204

Query: 750 QKVVTRYLQRDNLLISSIKRLTELAKNGRDALMN-CDVDE----LGKIMLEAWRLHQELD 804
             V  RY +   L+   ++ + +L    ++ +++  D +E    LG++M     L   L 
Sbjct: 205 AMVRKRYEEMPELVEPILEAMGKLVDKAKEIILSKLDEEEKLTKLGELMNINHGLLDALG 264

Query: 805 PHCSNEFVDRLFAFADPYCCGYKLVGAGGGG--FALLLAKDAESATELR 851
              + +  + ++A       G KL GAGGGG  +AL   +  E AT ++
Sbjct: 265 V-STKKLGELVYAARTAGAIGAKLTGAGGGGCMYALAPGRQREVATAIK 312

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	873
255564617	873	ATP binding protein, putative [Ricinus c	0.998	0.998	0.801	0.0
18378810	1055	L-fucokinase/GDP-L-fucose pyrophosphoryl	0.986	0.816	0.746	0.0
297848402	1055	hypothetical protein ARALYDRAFT_470155 [	0.989	0.818	0.743	0.0
449433020	1065	PREDICTED: LOW QUALITY PROTEIN: bifuncti	0.987	0.809	0.749	0.0
356571254	1049	PREDICTED: bifunctional fucokinase/fucos	0.996	0.829	0.756	0.0
297745504	1083	unnamed protein product [Vitis vinifera]	0.996	0.803	0.754	0.0
225470962	1079	PREDICTED: bifunctional fucokinase/fucos	0.996	0.806	0.754	0.0
356504185	1056	PREDICTED: bifunctional fucokinase/fucos	0.997	0.824	0.751	0.0
9665149	1113	Hypothetical protein [Arabidopsis thalia	0.986	0.773	0.7	0.0
147767787	949	hypothetical protein VITISV_022079 [Viti	0.966	0.889	0.717	0.0

>gi|255564617|ref|XP_002523303.1| ATP binding protein, putative [Ricinus communis] gi|223537391|gb|EEF39019.1| ATP binding protein, putative [Ricinus communis]

 Score = 1405 bits (3638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 699/872 (80%), Positives = 782/872 (89%)

Query: 1   MTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLL 60
           MTGDVLPCFDAS +++P++ASCIITVPITLDIASNHGVIVA+K+GI  E+Y LSLVD+LL
Sbjct: 1   MTGDVLPCFDASALVIPDNASCIITVPITLDIASNHGVIVASKNGIQTESYTLSLVDNLL 60

Query: 61  QKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSL 120
           QKP V+EL KN A+LDDGR LLDTGIIAV+GKAWEELVML+CSC PM++ELL++ KEMSL
Sbjct: 61  QKPGVEELVKNQALLDDGRTLLDTGIIAVKGKAWEELVMLACSCQPMITELLENRKEMSL 120

Query: 121 YEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGD 180
           YEDLVAAWVPAKHDWL L+P+GKELV  LG Q MFSYCA +LLFLHFGTSSEVLDHLSG 
Sbjct: 121 YEDLVAAWVPAKHDWLQLQPMGKELVGSLGGQNMFSYCADDLLFLHFGTSSEVLDHLSGA 180

Query: 181 VSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSI 240
            S LVGRRHLCSIPATT SDIAASAVVLSSKI  GVSIGEDSLIYDS+IS G+QIGSLS+
Sbjct: 181 SSELVGRRHLCSIPATTASDIAASAVVLSSKIEPGVSIGEDSLIYDSSISGGMQIGSLSV 240

Query: 241 VVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTF 300
           VVG N P + G   E+SFRF LPDR+CLWEVPLV CTERVLVYCGLHDNPKNSL+KDGTF
Sbjct: 241 VVGVNVPVDIGGRTEESFRFTLPDRNCLWEVPLVECTERVLVYCGLHDNPKNSLSKDGTF 300

Query: 301 CGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLTLATWLMGLSDHKTG 360
           CGKPW+KV HDL I+ESDLWSS GSQEKCLW AKIFPILSY EML+LA+WLMGL+D K+ 
Sbjct: 301 CGKPWKKVLHDLDIEESDLWSSVGSQEKCLWTAKIFPILSYFEMLSLASWLMGLTDQKSK 360

Query: 361 FLLPLWKNSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCE 420
            LL LWK S RVSLEELHRSIDFS+MCTGSSNHQADLAAGIAKACINYGMLGRNLSQLC 
Sbjct: 361 SLLSLWKISPRVSLEELHRSIDFSKMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCR 420

Query: 421 EILQKELSGVDICKDILDLCPRLQDQNSKILPKSRAYQAQVDLLRACKEETTASELEHKV 480
           EILQKE S V ICKD LDLCP+LQ++NSK+LPKSRAYQ QVDLLRAC++E TA +LE KV
Sbjct: 421 EILQKETSRVKICKDFLDLCPKLQERNSKVLPKSRAYQVQVDLLRACRDEKTACQLEQKV 480

Query: 481 WAAVADETASAIKYGFREYLLEPLSRGSSAYQNKNDDGFVDHPFQPRTVKVELPVRIDFA 540
           W AVADETASA++YGF+E+LL+  S  ++A++N   DG V+  F  R VKVELPVR+DF 
Sbjct: 481 WTAVADETASAVRYGFKEHLLDSPSVPAAAHKNNQVDGHVNQTFCARRVKVELPVRVDFV 540

Query: 541 GGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPI 600
           GGWSDTPPWSLERAGCVLN+AISLE  LPIGTIIETT+ +G+LI+DDAGNQL+I++LT I
Sbjct: 541 GGWSDTPPWSLERAGCVLNMAISLEGCLPIGTIIETTERTGLLINDDAGNQLYIDNLTSI 600

Query: 601 ATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKA 660
           A PF  +DPFRLVKSALLVTG+IHE ++ SMGLQIRTWANVPRGSGLGTSSILAAAVVK 
Sbjct: 601 APPFVVDDPFRLVKSALLVTGIIHENILVSMGLQIRTWANVPRGSGLGTSSILAAAVVKG 660

Query: 661 LLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPL 720
           LLQITDGD+SNENVARLVL+LEQLMGTGGGWQDQIGGLYPGIKFT+SFPGIPLRLQVIPL
Sbjct: 661 LLQITDGDESNENVARLVLVLEQLMGTGGGWQDQIGGLYPGIKFTTSFPGIPLRLQVIPL 720

Query: 721 LASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDA 780
           LAS QLI+EL+QRLLVVFTGQVRLAHQVLQKVV RYLQRDNLL+SS+KRL ELAK GR+A
Sbjct: 721 LASSQLIIELKQRLLVVFTGQVRLAHQVLQKVVIRYLQRDNLLVSSVKRLAELAKIGREA 780

Query: 781 LMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLL 840
           LMNC++DE+G+IMLEAWRLHQELDP+CSNE VDRLFAFADPYCCGYKLVGAGGGGFALLL
Sbjct: 781 LMNCEIDEIGEIMLEAWRLHQELDPYCSNELVDRLFAFADPYCCGYKLVGAGGGGFALLL 840

Query: 841 AKDAESATELRRMLEKDSNFNSEVYNWNIYLE 872
           AK+A S  ELR  LE+ S+FN +VYNW+I L+
Sbjct: 841 AKNANSGKELRHKLEECSDFNVKVYNWSICLD 872

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18378810|ref|NP_563620.1| L-fucokinase/GDP-L-fucose pyrophosphorylase [Arabidopsis thaliana] gi|332313388|sp|Q9LNJ9.2|FKGP_ARATH RecName: Full=Bifunctional fucokinase/fucose pyrophosphorylase; Short=AtFKGP; Includes: RecName: Full=L-fucokinase; Includes: RecName: Full=Fucose-1-phosphate guanylyltransferase; AltName: Full=GDP-fucose pyrophosphorylase gi|332189134|gb|AEE27255.1| L-fucokinase/GDP-L-fucose pyrophosphorylase [Arabidopsis thaliana]

 Score = 1344 bits (3478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 651/872 (74%), Positives = 744/872 (85%), Gaps = 11/872 (1%)

Query: 1    MTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLL 60
            MTGDVLPCFDA  M LPEDA+ I+TVPITLDIASNHGVIV +K   L E+Y +SLV+DLL
Sbjct: 190  MTGDVLPCFDAFKMTLPEDAASIVTVPITLDIASNHGVIVTSKSESLAESYTVSLVNDLL 249

Query: 61   QKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSL 120
            QKP V++L K  AIL DGR LLDTGII+ RG+AW +LV L CSC PM+ EL+ S KEMSL
Sbjct: 250  QKPTVEDLVKKDAILHDGRTLLDTGIISARGRAWSDLVALGCSCQPMILELIGSKKEMSL 309

Query: 121  YEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGD 180
            YEDLVAAWVP++HDWL  RPLG+ LV+ LG+Q+M+SYC Y+L FLHFGTSSEVLDHLSGD
Sbjct: 310  YEDLVAAWVPSRHDWLRTRPLGELLVNSLGRQKMYSYCTYDLQFLHFGTSSEVLDHLSGD 369

Query: 181  VSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSI 240
             SG+VGRRHLCSIPATTVSDIAAS+V+LSS+IA GVSIGEDSLIYDS +S  +QIGS SI
Sbjct: 370  ASGIVGRRHLCSIPATTVSDIAASSVILSSEIAPGVSIGEDSLIYDSTVSGAVQIGSQSI 429

Query: 241  VVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTF 300
            VVG + P E   T E SFRFMLPDRHCLWEVPLVG   RV+VYCGLHDNPKNS+ KDGTF
Sbjct: 430  VVGIHIPSEDLGTPE-SFRFMLPDRHCLWEVPLVGHKGRVIVYCGLHDNPKNSIHKDGTF 488

Query: 301  CGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLTLATWLMGLSDHKTG 360
            CGKP +KV  DLGI+ESDLWSS  +Q++CLWNAK+FPIL+YSEML LA+WLMGL D +  
Sbjct: 489  CGKPLEKVLFDLGIEESDLWSSYVAQDRCLWNAKLFPILTYSEMLKLASWLMGLDDSRNK 548

Query: 361  FLLPLWKNSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCE 420
              + LW++S+RVSLEELH SI+F EMC GSSNHQADLA GIAKAC+NYGMLGRNLSQLC 
Sbjct: 549  EKIKLWRSSQRVSLEELHGSINFPEMCNGSSNHQADLAGGIAKACMNYGMLGRNLSQLCH 608

Query: 421  EILQKELSGVDICKDILDLCPRLQDQNSKILPKSRAYQAQVDLLRACKEETTASELEHKV 480
            EILQKE  G++ICK+ LD CP+ Q+QNSKILPKSRAYQ +VDLLRAC +E  A ELEHKV
Sbjct: 609  EILQKESLGLEICKNFLDQCPKFQEQNSKILPKSRAYQVEVDLLRACGDEAKAIELEHKV 668

Query: 481  WAAVADETASAIKYGFREYLLEPLSRGSSAYQNKNDDGFVDHP---FQPRTVKVELPVRI 537
            W AVA+ETASA++YGFRE+LLE  S G S  +N      + HP   FQPR  KVELPVR+
Sbjct: 669  WGAVAEETASAVRYGFREHLLE--SSGKSHSENH-----ISHPDRVFQPRRTKVELPVRV 721

Query: 538  DFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDL 597
            DF GGWSDTPPWSLERAG VLN+AI+LE SLPIGTIIETT   G+ I DDAGN+LHIED 
Sbjct: 722  DFVGGWSDTPPWSLERAGYVLNMAITLEGSLPIGTIIETTNQMGISIQDDAGNELHIEDP 781

Query: 598  TPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAV 657
              I TPF+ NDPFRLVKSALLVTG++ E  ++S GL I+TWANVPRGSGLGTSSILAAAV
Sbjct: 782  ISIKTPFEVNDPFRLVKSALLVTGIVQENFVDSTGLAIKTWANVPRGSGLGTSSILAAAV 841

Query: 658  VKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQV 717
            VK LLQI++GD+SNEN+ARLVL+LEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIP+RLQV
Sbjct: 842  VKGLLQISNGDESNENIARLVLVLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPMRLQV 901

Query: 718  IPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNG 777
            +PLLASPQLI EL+QRLLVVFTGQVRLAHQVL KVVTRYLQRDNLLISSIKRLTELAK+G
Sbjct: 902  VPLLASPQLISELEQRLLVVFTGQVRLAHQVLHKVVTRYLQRDNLLISSIKRLTELAKSG 961

Query: 778  RDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFA 837
            R+ALMNC+VDE+G IM EAWRLHQELDP+CSNEFVD+LF F+ PY  G+KLVGAGGGGF+
Sbjct: 962  REALMNCEVDEVGDIMSEAWRLHQELDPYCSNEFVDKLFEFSQPYSSGFKLVGAGGGGFS 1021

Query: 838  LLLAKDAESATELRRMLEKDSNFNSEVYNWNI 869
            L+LAKDAE A ELR+ LE+ + F+ +VYNW+I
Sbjct: 1022 LILAKDAEKAKELRQRLEEHAEFDVKVYNWSI 1053

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848402|ref|XP_002892082.1| hypothetical protein ARALYDRAFT_470155 [Arabidopsis lyrata subsp. lyrata] gi|297337924|gb|EFH68341.1| hypothetical protein ARALYDRAFT_470155 [Arabidopsis lyrata subsp. lyrata]

 Score = 1337 bits (3459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/869 (74%), Positives = 737/869 (84%), Gaps = 5/869 (0%)

Query: 1    MTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLL 60
            MTGDVLPCFDA  M LPEDA+ I+TVPITLDIASNHGVIV +K   L E+Y +SLV+DLL
Sbjct: 190  MTGDVLPCFDAFRMTLPEDAASIVTVPITLDIASNHGVIVTSKSESLAESYTVSLVNDLL 249

Query: 61   QKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSL 120
            QKP V+EL K  AIL DGR LLDTGII+ +G+AW +LV L CSC PM+ EL+ S KEMSL
Sbjct: 250  QKPTVEELVKKDAILHDGRTLLDTGIISAKGRAWLDLVALGCSCQPMILELISSKKEMSL 309

Query: 121  YEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGD 180
            YEDLVAAWVP++HDWL  RPLG+ LV+ LG+Q+M+SYC Y+L FLHFGTSSEVLDHLSGD
Sbjct: 310  YEDLVAAWVPSRHDWLRARPLGELLVNSLGRQKMYSYCTYDLQFLHFGTSSEVLDHLSGD 369

Query: 181  VSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSI 240
             SG+VGRRHLCSIPATTVSDIAAS+V+LSS+IA GVSIGEDSLIYDS +S  +QIGS SI
Sbjct: 370  ASGIVGRRHLCSIPATTVSDIAASSVILSSEIAPGVSIGEDSLIYDSTVSGAVQIGSQSI 429

Query: 241  VVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTF 300
            VVG + P E   T E  FRFMLPDRHCLWEVPLVG   RV+VYCGLHDNPKNS+ KDGTF
Sbjct: 430  VVGIHIPSEDLGTPE-RFRFMLPDRHCLWEVPLVGHKGRVIVYCGLHDNPKNSIHKDGTF 488

Query: 301  CGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLTLATWLMGLSDHKTG 360
            CGKP +KV  DLGI+ESDLWSS  +Q++CLWNAK+FPIL+YSEML LA+WLMGL D +  
Sbjct: 489  CGKPLEKVLFDLGIEESDLWSSYVAQDRCLWNAKLFPILTYSEMLKLASWLMGLDDSRNK 548

Query: 361  FLLPLWKNSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCE 420
              + LW++S+RVSLEELH SI+F EMC GSSNHQADLAAGIAKAC+NYGMLGRN SQLC 
Sbjct: 549  EKITLWRSSQRVSLEELHGSINFPEMCNGSSNHQADLAAGIAKACMNYGMLGRNFSQLCH 608

Query: 421  EILQKELSGVDICKDILDLCPRLQDQNSKILPKSRAYQAQVDLLRACKEETTASELEHKV 480
            EILQKE  G++ICK+ LD CP+ Q+QNSKIL KSRAYQ +VDLLRAC +E  A +LEHKV
Sbjct: 609  EILQKESLGLEICKNFLDQCPKFQEQNSKILSKSRAYQVEVDLLRACGDEPKAIDLEHKV 668

Query: 481  WAAVADETASAIKYGFREYLLEPLSRGSSAYQNKNDDGFVDHPFQPRTVKVELPVRIDFA 540
            W AVA+ETASA++YGFRE+LLE     S    ++N+    D  FQP+  KVELPVR+DF 
Sbjct: 669  WGAVAEETASAVRYGFREHLLE----SSGKPHSENNISHPDRVFQPKRTKVELPVRVDFV 724

Query: 541  GGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPI 600
            GGWSDTPPWSLERAGCVLN+AI+LE SLPIGTIIETT   G+ I DD GN+LHIED   I
Sbjct: 725  GGWSDTPPWSLERAGCVLNMAITLEGSLPIGTIIETTNQIGISIQDDTGNELHIEDPISI 784

Query: 601  ATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKA 660
             TPF+ NDPFRLVKSALLVTG++ E  ++S GL I+TWANVPRGSGLGTSSILAAAVV  
Sbjct: 785  KTPFEVNDPFRLVKSALLVTGIVQENFVDSTGLAIKTWANVPRGSGLGTSSILAAAVVTG 844

Query: 661  LLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPL 720
            LLQI+DGD+SNENVARLVL+LEQLMGTGGGWQDQIGGLYPGIKFTSSFPG PLRLQV+PL
Sbjct: 845  LLQISDGDESNENVARLVLVLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGTPLRLQVVPL 904

Query: 721  LASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDA 780
            LASPQLI EL+QRLLVVFTGQVRLAHQVL KVVTRYLQRDNLLISSIKRLTELAK+GR+A
Sbjct: 905  LASPQLISELEQRLLVVFTGQVRLAHQVLHKVVTRYLQRDNLLISSIKRLTELAKSGREA 964

Query: 781  LMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLL 840
            LMNC+VDELG IM EAWRLHQELDP+CSNEFVD+LFAF+ PY  G+KLVGAGGGGFAL+L
Sbjct: 965  LMNCEVDELGDIMSEAWRLHQELDPYCSNEFVDKLFAFSQPYSSGFKLVGAGGGGFALIL 1024

Query: 841  AKDAESATELRRMLEKDSNFNSEVYNWNI 869
            AKD E   ELR+ LE+ + F+ +VYNW+I
Sbjct: 1025 AKDTEKGKELRQRLEEHAEFDVKVYNWSI 1053

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433020|ref|XP_004134296.1| PREDICTED: LOW QUALITY PROTEIN: bifunctional fucokinase/fucose pyrophosphorylase-like [Cucumis sativus] gi|449478213|ref|XP_004155252.1| PREDICTED: LOW QUALITY PROTEIN: bifunctional fucokinase/fucose pyrophosphorylase-like [Cucumis sativus]

 Score = 1331 bits (3444), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 653/871 (74%), Positives = 738/871 (84%), Gaps = 9/871 (1%)

Query: 1    MTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLL 60
            MTGDVLPCFDAS +ILPE+ SCIITVPITLDIASNHGVIVA+K+      Y LSLVD+LL
Sbjct: 204  MTGDVLPCFDASALILPEEDSCIITVPITLDIASNHGVIVASKNETAGRGYTLSLVDNLL 263

Query: 61   QKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSL 120
            QKP+V+EL KN A+L DGR LLDTGIIAVRGK W ELV+L+CSC PM+S+LLK GKE+SL
Sbjct: 264  QKPSVEELTKNDAVLSDGRTLLDTGIIAVRGKGWAELVLLACSCQPMISDLLKCGKEISL 323

Query: 121  YEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGD 180
            YEDLVAAWVPAKH+WL  RP G+E++ +LG+Q+MFSYCAY+LLFLHFGTSSEVLDHLSGD
Sbjct: 324  YEDLVAAWVPAKHEWLQPRPFGEEVIRRLGRQKMFSYCAYDLLFLHFGTSSEVLDHLSGD 383

Query: 181  VSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSI 240
             S L+GRRHLCSIPATT SDIAAS V+LSS+I  GVS+GEDSLIYDS+IS G+QIGS  I
Sbjct: 384  ESELIGRRHLCSIPATTSSDIAASVVILSSRIGPGVSVGEDSLIYDSSISVGVQIGSQCI 443

Query: 241  VVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTF 300
            VV  N  E        +FRFMLPDRHCLWEVPLVG TERV+VYCGLHDNPK S++  GTF
Sbjct: 444  VVSVNISETNNQLPGGAFRFMLPDRHCLWEVPLVGYTERVIVYCGLHDNPKISVSNGGTF 503

Query: 301  CGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLTLATWLMGLSDHKTG 360
            CGKPW+KV  DL I+ESDLW +  +QEKCLWNA+IFP+LSYSEMLT A WL+GLSD KT 
Sbjct: 504  CGKPWKKVLQDLSIEESDLWPTARTQEKCLWNARIFPVLSYSEMLTYAMWLIGLSDAKTE 563

Query: 361  FLLPLWKNSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCE 420
             LLP WK+S RVSLEELH+SI+F +MCTGS NHQA+LAAGIAKACIN+GMLGRNLSQLCE
Sbjct: 564  HLLPSWKSSHRVSLEELHKSINFLKMCTGSRNHQAELAAGIAKACINFGMLGRNLSQLCE 623

Query: 421  EILQKELSGVDICKDILDLCPRLQDQNSKILPKSRAYQAQVDLLRACKEETTASELEHKV 480
            EI QKE+ G++ CKD LD+CP+L DQ+ K++PKSR YQ  VDLLRAC EET A ELE +V
Sbjct: 624  EIKQKEVLGLETCKDFLDMCPKLHDQSIKVVPKSRVYQVHVDLLRACSEETAAFELEREV 683

Query: 481  WAAVADETASAIKYGFREYLLEPLSRGSSAYQNKNDDGFVDHPFQPRTVKVELPVRIDFA 540
            WAAVADETASA++Y F++ L          + N + D  +D     + V V LPVR+DF 
Sbjct: 684  WAAVADETASAVRYDFKDKL---------GHSNNHSDNGIDQLIHHKRVTVNLPVRVDFV 734

Query: 541  GGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPI 600
            GGWSDTPPWSLER GCVLN+AI+LE SLP+GT IETTK SGVL SDDAGN+LHIEDL  I
Sbjct: 735  GGWSDTPPWSLERPGCVLNMAINLEGSLPVGTCIETTKTSGVLFSDDAGNELHIEDLNSI 794

Query: 601  ATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKA 660
             TPFD +DPFRLVKSALLVTG+IH+ ++  +GLQI+TWANVPRGSGLGTSSILAAAVVK 
Sbjct: 795  TTPFDSDDPFRLVKSALLVTGIIHDHILTVVGLQIKTWANVPRGSGLGTSSILAAAVVKG 854

Query: 661  LLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPL 720
            LLQITDGD+SNENVARLVL+LEQLMGTGGGWQDQIGGLYPGIKFT+SFPGIPLRLQVIPL
Sbjct: 855  LLQITDGDESNENVARLVLVLEQLMGTGGGWQDQIGGLYPGIKFTTSFPGIPLRLQVIPL 914

Query: 721  LASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDA 780
            L SPQL+ ELQ RLLVVFTGQVRLAHQVL KVVTRYL+RDNLLISSIKRL  LAK GR+A
Sbjct: 915  LPSPQLVSELQNRLLVVFTGQVRLAHQVLHKVVTRYLRRDNLLISSIKRLATLAKIGREA 974

Query: 781  LMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLL 840
            LMNCDVDELG+IM+E WRLHQELDP CSNEFVD+LFAFADPYCCGYKLVGAGGGGFALLL
Sbjct: 975  LMNCDVDELGEIMVETWRLHQELDPFCSNEFVDKLFAFADPYCCGYKLVGAGGGGFALLL 1034

Query: 841  AKDAESATELRRMLEKDSNFNSEVYNWNIYL 871
            AK +  A ELR  LE D NF  +VY+WNI L
Sbjct: 1035 AKSSVLAMELRNKLENDKNFEVKVYDWNISL 1065

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571254|ref|XP_003553794.1| PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase-like [Glycine max]

 Score = 1328 bits (3436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/872 (75%), Positives = 749/872 (85%), Gaps = 2/872 (0%)

Query: 1    MTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLL 60
            MTGDVLPCFDAS M LP D SCIITVPITLD+A+NHGVIVAA+     ++YA+SLVD+LL
Sbjct: 179  MTGDVLPCFDASLMTLPVDTSCIITVPITLDVAANHGVIVAAETEHSTQSYAVSLVDNLL 238

Query: 61   QKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSL 120
            QKP+VDEL K+ A+L DGR LLDTGIIAVRGKAW ELV L+CSC  M+SELL+S KEMSL
Sbjct: 239  QKPSVDELVKSKAVLADGRTLLDTGIIAVRGKAWLELVTLACSCQQMISELLQSKKEMSL 298

Query: 121  YEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGD 180
            YEDLVAAWVPAKH+WL  RPLG+ELV+KLGK++MFSYCAY+LLFLHFGTS+EVL+ LSG 
Sbjct: 299  YEDLVAAWVPAKHEWLRKRPLGEELVNKLGKRKMFSYCAYDLLFLHFGTSNEVLEQLSGV 358

Query: 181  VSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSI 240
             S LVGRRHLCSIPATT SDI ASA++LSSKIA GVSIGEDSLIYDS+I  GI IGSL I
Sbjct: 359  GSELVGRRHLCSIPATTASDITASAIILSSKIAPGVSIGEDSLIYDSSICGGIHIGSLCI 418

Query: 241  VVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTF 300
            VVG N   +   + E+S +FMLPDRHCLWEVPL+G  E VLVYCGLHDNPK+SL+KDGTF
Sbjct: 419  VVGVNISLDNLLSVENSIKFMLPDRHCLWEVPLIGNRELVLVYCGLHDNPKSSLSKDGTF 478

Query: 301  CGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLTLATWLMGLSDHKTG 360
            CGKPW+K+ HDLGIQESDLW S+G  EK LWN+KIFPIL Y++M+ +A WLMGL++ K+ 
Sbjct: 479  CGKPWKKILHDLGIQESDLWGSSGP-EKYLWNSKIFPILPYAQMVEVAMWLMGLANEKSE 537

Query: 361  FLLPLWKNSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCE 420
             +LPLWK SRR+SLEELHRSIDFS +C  SSNHQADL AGIAKACI+YGMLGRNLSQLCE
Sbjct: 538  SMLPLWKYSRRISLEELHRSIDFSRICIDSSNHQADLVAGIAKACISYGMLGRNLSQLCE 597

Query: 421  EILQKELSGVDICKDILDLCPRLQDQNSKILPKSRAYQAQVDLLRACKEETTASELEHKV 480
            EILQKE SGV+ICK+ L +CP +Q+QNS ILP+SRAYQ QVDLLRAC +E  A ELEHKV
Sbjct: 598  EILQKEGSGVEICKEFLAMCPIVQEQNSNILPQSRAYQVQVDLLRACNDEGMACELEHKV 657

Query: 481  WAAVADETASAIKYGFREYLLE-PLSRGSSAYQNKNDDGFVDHPFQPRTVKVELPVRIDF 539
            WAAVADETASA++YGF+E+L E P S     +QN + D     PF PR VKVELPVR+DF
Sbjct: 658  WAAVADETASAVRYGFKEHLSESPGSISCQEFQNNHHDNCTHLPFHPRRVKVELPVRVDF 717

Query: 540  AGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTP 599
             GGWSDTPPWS+ERAGCVLN+AISLE S PIGTIIETTK  G+L +DDA NQL + D   
Sbjct: 718  VGGWSDTPPWSIERAGCVLNMAISLEGSPPIGTIIETTKAEGILFTDDAENQLFVGDYKS 777

Query: 600  IATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVK 659
            I  PFD +DPFRLVKSALLVTG+IH+ ++  MG+ I+TWANVPRGSGLGTSSILAAAVVK
Sbjct: 778  ICAPFDGDDPFRLVKSALLVTGIIHDNILVDMGMHIKTWANVPRGSGLGTSSILAAAVVK 837

Query: 660  ALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIP 719
             LLQI DGD S ENVARLVL+LEQLMGTGGGWQDQIGGLYPGIK TSSFPGIPLRLQV+P
Sbjct: 838  GLLQIIDGDDSTENVARLVLVLEQLMGTGGGWQDQIGGLYPGIKCTSSFPGIPLRLQVVP 897

Query: 720  LLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRD 779
            LLASPQLI ELQQRLLVVFTGQVRLAH+VLQKVV RYL+RDNLL+SSIKRL ELAK GR+
Sbjct: 898  LLASPQLISELQQRLLVVFTGQVRLAHKVLQKVVVRYLRRDNLLVSSIKRLAELAKIGRE 957

Query: 780  ALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALL 839
            ALMNCDVDELG+I+LEAWRLHQELDP+CSNEF+DRLF+FA PYCCGYKLVGAGGGGFALL
Sbjct: 958  ALMNCDVDELGEIILEAWRLHQELDPYCSNEFIDRLFSFATPYCCGYKLVGAGGGGFALL 1017

Query: 840  LAKDAESATELRRMLEKDSNFNSEVYNWNIYL 871
            LAKDA+ A ELRR LE + +F  +VY+W I+L
Sbjct: 1018 LAKDAQLAKELRRRLEDEKHFEVKVYDWQIFL 1049

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745504|emb|CBI40584.3| unnamed protein product [Vitis vinifera]

 Score = 1325 bits (3429), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 663/879 (75%), Positives = 763/879 (86%), Gaps = 9/879 (1%)

Query: 1    MTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLL 60
            MTGDVLPCFDASTM+LPED SCIITVP+TLDIASNHGVIVA+K GILN+   +SLV++LL
Sbjct: 205  MTGDVLPCFDASTMVLPEDTSCIITVPLTLDIASNHGVIVASKTGILNKTSYVSLVENLL 264

Query: 61   QKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSL 120
            QKP ++EL KN AILDDGR LLDTGIIAVRGKAW ELV L+CS  PM+++LLKS KEMSL
Sbjct: 265  QKPTMEELVKNQAILDDGRTLLDTGIIAVRGKAWVELVRLACSSQPMIADLLKSKKEMSL 324

Query: 121  YEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGD 180
            YEDLVAAWV A+H+WL LRPLG+EL+++LGKQ+M+SYCAY+LLFLHFGTSSEVLDHLSG 
Sbjct: 325  YEDLVAAWVLARHEWLRLRPLGEELINRLGKQKMYSYCAYDLLFLHFGTSSEVLDHLSGA 384

Query: 181  VSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSI 240
             SGLVGRRHLCS+PATTVSDIAASAVV+SSKIA  VSIG+DS++YDS+IS GIQIGS SI
Sbjct: 385  DSGLVGRRHLCSVPATTVSDIAASAVVISSKIAPSVSIGDDSIVYDSSISGGIQIGSQSI 444

Query: 241  VVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTF 300
            VVG N P ++    ++ FRF+LPDRHCLWEVPLVGCT RV+VYCGLHDNPK+SL+++GTF
Sbjct: 445  VVGVNVPGDSNGIEDNGFRFILPDRHCLWEVPLVGCTGRVIVYCGLHDNPKDSLSRNGTF 504

Query: 301  CGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLTLATWLMGLSDHKTG 360
            CGKPW KV HDLGIQE DLWS+  + EKCLWNAKIFPILSY EML+LA WLMGL+D KT 
Sbjct: 505  CGKPWDKVLHDLGIQEGDLWSTRSTHEKCLWNAKIFPILSYFEMLSLAAWLMGLNDQKTK 564

Query: 361  FLLPLWKNSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCE 420
             LLPLWK+S+RVSLEELHRSIDF  MC GSSNHQADLAAGIAKACINYG+LGRNLSQLCE
Sbjct: 565  SLLPLWKSSQRVSLEELHRSIDFPHMCIGSSNHQADLAAGIAKACINYGLLGRNLSQLCE 624

Query: 421  EILQKELSGVDICKDILDLCPRLQDQNSKILPKSRAYQAQVDLLRACKEETTASELEHKV 480
            EILQK++SGV ICKD+LD C  LQ QNSKILPKSRAYQ QVDLL+AC+EE  A +LEHKV
Sbjct: 625  EILQKDVSGVKICKDLLDQCSNLQGQNSKILPKSRAYQVQVDLLQACREEKMACKLEHKV 684

Query: 481  WAAVADETASAIKYGFREYLLEPL-SRGSSAYQNKNDDGFVDHPFQPRTVKVELPVRIDF 539
            WAAVADETA+A++YGFRE +LE   S  +SAYQ+   DG VD  F+ R V++ELPVR+DF
Sbjct: 685  WAAVADETAAAVRYGFRERVLESSNSTSASAYQSSAFDGCVDQSFRHRDVRIELPVRVDF 744

Query: 540  AGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAG-NQLHIEDLT 598
             GGWSDTPPWSLERAGCVLN++I L+   P+GT I TT+ +G+ I+DD   N+++IED T
Sbjct: 745  VGGWSDTPPWSLERAGCVLNMSIKLDDCAPVGTSITTTEQTGIEINDDDTINKVYIEDPT 804

Query: 599  PIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVV 658
             I TPF+ NDPFRLVKSALLVTGV  +KL+ SMGLQI TW  VPRG+GLGTSSILAAAVV
Sbjct: 805  SITTPFNSNDPFRLVKSALLVTGVTRDKLLLSMGLQIHTWTGVPRGTGLGTSSILAAAVV 864

Query: 659  KALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVI 718
            K LL+IT+ D SNE VARLVL+LEQLMGTGGGWQDQIGGLYPGIKFT SFPG+PL+LQVI
Sbjct: 865  KGLLKITNRDDSNEIVARLVLVLEQLMGTGGGWQDQIGGLYPGIKFTESFPGVPLKLQVI 924

Query: 719  PLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGR 778
            PL+ASPQLI +LQQRLLVVFTGQVR A +VL+KVVTRYL+RDNLLISSIKRL ELA+ GR
Sbjct: 925  PLMASPQLISDLQQRLLVVFTGQVRPARRVLEKVVTRYLRRDNLLISSIKRLAELARMGR 984

Query: 779  DALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFAL 838
            +ALMNCD+DELG+IMLEAWRLHQELDP+CSN FVDRLF  ADP+CCGYKLVGAGGGGFAL
Sbjct: 985  EALMNCDLDELGEIMLEAWRLHQELDPYCSNTFVDRLFELADPFCCGYKLVGAGGGGFAL 1044

Query: 839  LLAKDAESATELRRMLEKD-------SNFNSEVYNWNIY 870
            LLAKDA+SA +LR +L+KD       S F  ++YNW ++
Sbjct: 1045 LLAKDADSAKKLRDLLQKDPHLEEYGSEFEVKIYNWALF 1083

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470962|ref|XP_002264541.1| PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase-like [Vitis vinifera]

 Score = 1325 bits (3428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 663/879 (75%), Positives = 763/879 (86%), Gaps = 9/879 (1%)

Query: 1    MTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLL 60
            MTGDVLPCFDASTM+LPED SCIITVP+TLDIASNHGVIVA+K GILN+   +SLV++LL
Sbjct: 201  MTGDVLPCFDASTMVLPEDTSCIITVPLTLDIASNHGVIVASKTGILNKTSYVSLVENLL 260

Query: 61   QKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSL 120
            QKP ++EL KN AILDDGR LLDTGIIAVRGKAW ELV L+CS  PM+++LLKS KEMSL
Sbjct: 261  QKPTMEELVKNQAILDDGRTLLDTGIIAVRGKAWVELVRLACSSQPMIADLLKSKKEMSL 320

Query: 121  YEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGD 180
            YEDLVAAWV A+H+WL LRPLG+EL+++LGKQ+M+SYCAY+LLFLHFGTSSEVLDHLSG 
Sbjct: 321  YEDLVAAWVLARHEWLRLRPLGEELINRLGKQKMYSYCAYDLLFLHFGTSSEVLDHLSGA 380

Query: 181  VSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSI 240
             SGLVGRRHLCS+PATTVSDIAASAVV+SSKIA  VSIG+DS++YDS+IS GIQIGS SI
Sbjct: 381  DSGLVGRRHLCSVPATTVSDIAASAVVISSKIAPSVSIGDDSIVYDSSISGGIQIGSQSI 440

Query: 241  VVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTF 300
            VVG N P ++    ++ FRF+LPDRHCLWEVPLVGCT RV+VYCGLHDNPK+SL+++GTF
Sbjct: 441  VVGVNVPGDSNGIEDNGFRFILPDRHCLWEVPLVGCTGRVIVYCGLHDNPKDSLSRNGTF 500

Query: 301  CGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLTLATWLMGLSDHKTG 360
            CGKPW KV HDLGIQE DLWS+  + EKCLWNAKIFPILSY EML+LA WLMGL+D KT 
Sbjct: 501  CGKPWDKVLHDLGIQEGDLWSTRSTHEKCLWNAKIFPILSYFEMLSLAAWLMGLNDQKTK 560

Query: 361  FLLPLWKNSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCE 420
             LLPLWK+S+RVSLEELHRSIDF  MC GSSNHQADLAAGIAKACINYG+LGRNLSQLCE
Sbjct: 561  SLLPLWKSSQRVSLEELHRSIDFPHMCIGSSNHQADLAAGIAKACINYGLLGRNLSQLCE 620

Query: 421  EILQKELSGVDICKDILDLCPRLQDQNSKILPKSRAYQAQVDLLRACKEETTASELEHKV 480
            EILQK++SGV ICKD+LD C  LQ QNSKILPKSRAYQ QVDLL+AC+EE  A +LEHKV
Sbjct: 621  EILQKDVSGVKICKDLLDQCSNLQGQNSKILPKSRAYQVQVDLLQACREEKMACKLEHKV 680

Query: 481  WAAVADETASAIKYGFREYLLEPL-SRGSSAYQNKNDDGFVDHPFQPRTVKVELPVRIDF 539
            WAAVADETA+A++YGFRE +LE   S  +SAYQ+   DG VD  F+ R V++ELPVR+DF
Sbjct: 681  WAAVADETAAAVRYGFRERVLESSNSTSASAYQSSAFDGCVDQSFRHRDVRIELPVRVDF 740

Query: 540  AGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAG-NQLHIEDLT 598
             GGWSDTPPWSLERAGCVLN++I L+   P+GT I TT+ +G+ I+DD   N+++IED T
Sbjct: 741  VGGWSDTPPWSLERAGCVLNMSIKLDDCAPVGTSITTTEQTGIEINDDDTINKVYIEDPT 800

Query: 599  PIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVV 658
             I TPF+ NDPFRLVKSALLVTGV  +KL+ SMGLQI TW  VPRG+GLGTSSILAAAVV
Sbjct: 801  SITTPFNSNDPFRLVKSALLVTGVTRDKLLLSMGLQIHTWTGVPRGTGLGTSSILAAAVV 860

Query: 659  KALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVI 718
            K LL+IT+ D SNE VARLVL+LEQLMGTGGGWQDQIGGLYPGIKFT SFPG+PL+LQVI
Sbjct: 861  KGLLKITNRDDSNEIVARLVLVLEQLMGTGGGWQDQIGGLYPGIKFTESFPGVPLKLQVI 920

Query: 719  PLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGR 778
            PL+ASPQLI +LQQRLLVVFTGQVR A +VL+KVVTRYL+RDNLLISSIKRL ELA+ GR
Sbjct: 921  PLMASPQLISDLQQRLLVVFTGQVRPARRVLEKVVTRYLRRDNLLISSIKRLAELARMGR 980

Query: 779  DALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFAL 838
            +ALMNCD+DELG+IMLEAWRLHQELDP+CSN FVDRLF  ADP+CCGYKLVGAGGGGFAL
Sbjct: 981  EALMNCDLDELGEIMLEAWRLHQELDPYCSNTFVDRLFELADPFCCGYKLVGAGGGGFAL 1040

Query: 839  LLAKDAESATELRRMLEKD-------SNFNSEVYNWNIY 870
            LLAKDA+SA +LR +L+KD       S F  ++YNW ++
Sbjct: 1041 LLAKDADSAKKLRDLLQKDPHLEEYGSEFEVKIYNWALF 1079

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504185|ref|XP_003520879.1| PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase-like [Glycine max]

 Score = 1325 bits (3428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 655/872 (75%), Positives = 747/872 (85%), Gaps = 1/872 (0%)

Query: 1    MTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLL 60
            MTGDVLPCFDAS M LP D SCIITVPITLD+A+NHGVIVAA+     + YA+SLVD+LL
Sbjct: 185  MTGDVLPCFDASLMTLPVDTSCIITVPITLDVAANHGVIVAAETEHSTQTYAVSLVDNLL 244

Query: 61   QKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSL 120
            QKP+VDEL K+ A+L DGR LLDTGIIAVRGKAW ELV L+CSC  M+SELL+S KEMSL
Sbjct: 245  QKPSVDELVKSKAVLADGRTLLDTGIIAVRGKAWLELVTLACSCQQMISELLQSKKEMSL 304

Query: 121  YEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGD 180
            YEDL+AAWVPAKH+WL  RPLG+ELV+KLGK++MFSY AY+LLFLHFGTS+EVLDHLSG 
Sbjct: 305  YEDLIAAWVPAKHEWLRKRPLGEELVNKLGKRKMFSYRAYDLLFLHFGTSNEVLDHLSGV 364

Query: 181  VSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSI 240
             S LVGRRHLCSIPATT SDI ASA+++SSKIA GVSIGEDSLIYDS+I  GI IGSL I
Sbjct: 365  GSELVGRRHLCSIPATTASDITASAIIISSKIAPGVSIGEDSLIYDSSICGGIHIGSLCI 424

Query: 241  VVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTF 300
            VVG N   +   + E S +FMLPDRHCLWEVPL+G  ERVLVYCGLHDNPK+SL+KDGTF
Sbjct: 425  VVGVNISLDNFLSVEKSIKFMLPDRHCLWEVPLIGNRERVLVYCGLHDNPKSSLSKDGTF 484

Query: 301  CGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLTLATWLMGLSDHKTG 360
            CGKPW+K+ HDLGIQESDLW S+G  EK LWN+KIFPIL Y++M+ +A WLMGL++ K+ 
Sbjct: 485  CGKPWKKILHDLGIQESDLWGSSGPDEKYLWNSKIFPILPYAQMIEVAMWLMGLANEKSE 544

Query: 361  FLLPLWKNSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCE 420
             +LPLWK S+R+SLEELHRSIDFS +C  SSNHQADLAAGIAKACI+YGMLGRNLSQLCE
Sbjct: 545  SMLPLWKYSQRISLEELHRSIDFSTICIDSSNHQADLAAGIAKACISYGMLGRNLSQLCE 604

Query: 421  EILQKELSGVDICKDILDLCPRLQDQNSKILPKSRAYQAQVDLLRACKEETTASELEHKV 480
            EILQK+  GV+ICK+ L +CP ++ QNS ILP+SRAYQ +VDLLRAC +E TA +LEHKV
Sbjct: 605  EILQKKGPGVEICKEFLAMCPIVRKQNSNILPQSRAYQVEVDLLRACNDEGTACKLEHKV 664

Query: 481  WAAVADETASAIKYGFREYLLE-PLSRGSSAYQNKNDDGFVDHPFQPRTVKVELPVRIDF 539
            WAAVADETASA++YGF+E+L E P S     +QN   D     PF PR V+VELPVR+DF
Sbjct: 665  WAAVADETASAVRYGFKEHLSESPGSLSCQEFQNNQHDNCTHLPFHPRRVEVELPVRVDF 724

Query: 540  AGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTP 599
             GGWSDTPPWS+ERAGCVLN+AISLE   PIGTIIETTK  G+L +DDA NQL +ED T 
Sbjct: 725  VGGWSDTPPWSIERAGCVLNMAISLEGFQPIGTIIETTKTEGILFTDDAENQLFVEDYTS 784

Query: 600  IATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVK 659
            I  PFD +DPFRLVKSAL VTG+IH+ ++  MG+ I+TWANVPRGSGLGTSSILAAAVVK
Sbjct: 785  ICAPFDGDDPFRLVKSALHVTGIIHDNILVDMGMHIKTWANVPRGSGLGTSSILAAAVVK 844

Query: 660  ALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIP 719
             LLQ+ DGD S ENVARLVL+LEQLMGTGGGWQDQIGGLYPGIK TSSFPGIPLRLQV+P
Sbjct: 845  GLLQVIDGDDSTENVARLVLVLEQLMGTGGGWQDQIGGLYPGIKCTSSFPGIPLRLQVVP 904

Query: 720  LLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRD 779
            LLASPQLI +LQQRLLVVFTGQVRLAH+VLQKVV RYL+RDNLL+SSIKRL ELAK GR+
Sbjct: 905  LLASPQLISKLQQRLLVVFTGQVRLAHKVLQKVVVRYLRRDNLLVSSIKRLVELAKIGRE 964

Query: 780  ALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALL 839
            ALMNCDVDELG+IMLEAWRLHQELDP+CSNEFVDRLF+FA PYCCGYKLVGAGGGGFALL
Sbjct: 965  ALMNCDVDELGEIMLEAWRLHQELDPYCSNEFVDRLFSFATPYCCGYKLVGAGGGGFALL 1024

Query: 840  LAKDAESATELRRMLEKDSNFNSEVYNWNIYL 871
            LAKDA+ A ELR+ LE D +F  +VY+W I+L
Sbjct: 1025 LAKDAQLAKELRQRLEDDKHFEVKVYDWQIFL 1056

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9665149|gb|AAF97333.1|AC023628_14 Hypothetical protein [Arabidopsis thaliana]

 Score = 1311 bits (3393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 651/930 (70%), Positives = 744/930 (80%), Gaps = 69/930 (7%)

Query: 1    MTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLL 60
            MTGDVLPCFDA  M LPEDA+ I+TVPITLDIASNHGVIV +K   L E+Y +SLV+DLL
Sbjct: 190  MTGDVLPCFDAFKMTLPEDAASIVTVPITLDIASNHGVIVTSKSESLAESYTVSLVNDLL 249

Query: 61   QKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSL 120
            QKP V++L K  AIL DGR LLDTGII+ RG+AW +LV L CSC PM+ EL+ S KEMSL
Sbjct: 250  QKPTVEDLVKKDAILHDGRTLLDTGIISARGRAWSDLVALGCSCQPMILELIGSKKEMSL 309

Query: 121  YEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFSYCA--------------------- 159
            YEDLVAAWVP++HDWL  RPLG+ LV+ LG+Q+M+SYC                      
Sbjct: 310  YEDLVAAWVPSRHDWLRTRPLGELLVNSLGRQKMYSYCTCMFVLISRLAKLKKKEIEIAM 369

Query: 160  -------YELL-----FLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVV 207
                   Y L+     FLHFGTSSEVLDHLSGD SG+VGRRHLCSIPATTVSDIAAS+V+
Sbjct: 370  LTFLISLYHLVSDDLQFLHFGTSSEVLDHLSGDASGIVGRRHLCSIPATTVSDIAASSVI 429

Query: 208  LSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHC 267
            LSS+IA GVSIGEDSLIYDS +S  +QIGS SIVVG + P E   T E SFRFMLPDRHC
Sbjct: 430  LSSEIAPGVSIGEDSLIYDSTVSGAVQIGSQSIVVGIHIPSEDLGTPE-SFRFMLPDRHC 488

Query: 268  LWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTFCGKPWQKVWHDLGIQESDLWSSTGSQE 327
            LWEVPLVG   RV+VYCGLHDNPKNS+ KDGTFCGKP +KV  DLGI+ESDLWSS  +Q+
Sbjct: 489  LWEVPLVGHKGRVIVYCGLHDNPKNSIHKDGTFCGKPLEKVLFDLGIEESDLWSSYVAQD 548

Query: 328  KCLWNAKIFPILSYSEMLTLATWLMGLSDHKTGFLLPLWKNSRRVSLEELHRSIDFSEMC 387
            +CLWNAK+FPIL+YSEML LA+WLMGL D +    + LW++S+RVSLEELH SI+F EMC
Sbjct: 549  RCLWNAKLFPILTYSEMLKLASWLMGLDDSRNKEKIKLWRSSQRVSLEELHGSINFPEMC 608

Query: 388  TGSSNHQADLAAGIAKACINYGMLGRNLSQLCEEILQKELSGVDICKDILDLCPRLQDQN 447
             GSSNHQADLA GIAKAC+NYGMLGRNLSQLC EILQKE  G++ICK+ LD CP+ Q+QN
Sbjct: 609  NGSSNHQADLAGGIAKACMNYGMLGRNLSQLCHEILQKESLGLEICKNFLDQCPKFQEQN 668

Query: 448  SKILPKSRAYQAQVDLLRACKEETTASELEHKVWAAVADETASAIKYGFR---------- 497
            SKILPKSRAYQ +VDLLRAC +E  A ELEHKVW AVA+ETASA++YGFR          
Sbjct: 669  SKILPKSRAYQVEVDLLRACGDEAKAIELEHKVWGAVAEETASAVRYGFRGKNLATTVWY 728

Query: 498  ---------------EYLLEPLSRGSSAYQNKNDDGFVDHP---FQPRTVKVELPVRIDF 539
                           E+LLE  S G S  +N      + HP   FQPR  KVELPVR+DF
Sbjct: 729  NTFHKPGFNSFICSSEHLLE--SSGKSHSENH-----ISHPDRVFQPRRTKVELPVRVDF 781

Query: 540  AGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTP 599
             GGWSDTPPWSLERAG VLN+AI+LE SLPIGTIIETT   G+ I DDAGN+LHIED   
Sbjct: 782  VGGWSDTPPWSLERAGYVLNMAITLEGSLPIGTIIETTNQMGISIQDDAGNELHIEDPIS 841

Query: 600  IATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVK 659
            I TPF+ NDPFRLVKSALLVTG++ E  ++S GL I+TWANVPRGSGLGTSSILAAAVVK
Sbjct: 842  IKTPFEVNDPFRLVKSALLVTGIVQENFVDSTGLAIKTWANVPRGSGLGTSSILAAAVVK 901

Query: 660  ALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIP 719
             LLQI++GD+SNEN+ARLVL+LEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIP+RLQV+P
Sbjct: 902  GLLQISNGDESNENIARLVLVLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPMRLQVVP 961

Query: 720  LLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRD 779
            LLASPQLI EL+QRLLVVFTGQVRLAHQVL KVVTRYLQRDNLLISSIKRLTELAK+GR+
Sbjct: 962  LLASPQLISELEQRLLVVFTGQVRLAHQVLHKVVTRYLQRDNLLISSIKRLTELAKSGRE 1021

Query: 780  ALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALL 839
            ALMNC+VDE+G IM EAWRLHQELDP+CSNEFVD+LF F+ PY  G+KLVGAGGGGF+L+
Sbjct: 1022 ALMNCEVDEVGDIMSEAWRLHQELDPYCSNEFVDKLFEFSQPYSSGFKLVGAGGGGFSLI 1081

Query: 840  LAKDAESATELRRMLEKDSNFNSEVYNWNI 869
            LAKDAE A ELR+ LE+ + F+ +VYNW+I
Sbjct: 1082 LAKDAEKAKELRQRLEEHAEFDVKVYNWSI 1111

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767787|emb|CAN66976.1| hypothetical protein VITISV_022079 [Vitis vinifera]

 Score = 1242 bits (3213), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/879 (71%), Positives = 730/879 (83%), Gaps = 35/879 (3%)

Query: 1   MTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLL 60
           MTGDVLPCFDASTM+LPED SCIITVP+TLDIASNHGVIVA+K GILN+   +SLV++LL
Sbjct: 97  MTGDVLPCFDASTMVLPEDTSCIITVPLTLDIASNHGVIVASKTGILNKTSYVSLVENLL 156

Query: 61  QKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSL 120
           QKP ++EL KN AILDDGR LLDTGIIAVRGKAW ELV L+CS  PM+++LLKS KEMSL
Sbjct: 157 QKPTMEELVKNQAILDDGRTLLDTGIIAVRGKAWVELVRLACSSQPMIADLLKSKKEMSL 216

Query: 121 YEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGD 180
           YEDLVAAWV A+H+WL LRPLG+EL+++LGKQ+M+SYCAY+LLFLHFGTSSEVLDHLSG 
Sbjct: 217 YEDLVAAWVLARHEWLRLRPLGEELINRLGKQKMYSYCAYDLLFLHFGTSSEVLDHLSGA 276

Query: 181 VSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSI 240
            SGLVGRRHLCS+PATTVSDIAASA V+SSKIA  VSIG+DS++YDS+IS GIQIGS SI
Sbjct: 277 DSGLVGRRHLCSVPATTVSDIAASAXVISSKIAPSVSIGDDSIVYDSSISGGIQIGSQSI 336

Query: 241 VVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTF 300
           VVG N P ++    ++ FRF+LPDRHCLWEVPLVGCT RV+VYCGLHDNPK+SL+++ TF
Sbjct: 337 VVGVNVPGDSNGIEDNGFRFILPDRHCLWEVPLVGCTGRVIVYCGLHDNPKDSLSRNXTF 396

Query: 301 CGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLTLATWLMGLSDHKTG 360
           CGKPW KV HDLGIQE DLWS+  + EKCLWNAKIFPILSY EML+LA WLMGL+D KT 
Sbjct: 397 CGKPWDKVLHDLGIQEGDLWSTXSTHEKCLWNAKIFPILSYFEMLSLAAWLMGLNDQKTK 456

Query: 361 FLLPLWKNSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCE 420
            LLPLWK+S+RVSLEELHRSIDF  MC GSSNHQADLAAGIAKACINYG+LGRNLSQL  
Sbjct: 457 SLLPLWKSSQRVSLEELHRSIDFPHMCIGSSNHQADLAAGIAKACINYGLLGRNLSQL-- 514

Query: 421 EILQKELSGVDICKDILDLCPRLQDQNSKILPKSRAYQAQVDLLRACKEETTASELEHKV 480
                                   D+  +  PK+   + QVDLL+AC+EE  A  LEHKV
Sbjct: 515 ------------------------DKTLRFFPKAGHTKVQVDLLQACREEKMACXLEHKV 550

Query: 481 WAAVADETASAIKYGFREYLLEPL-SRGSSAYQNKNDDGFVDHPFQPRTVKVELPVRIDF 539
           WAAVADETA+A++YGFRE +LE   S  +SAYQ+   DG VD  F+ R V++ELPVR+DF
Sbjct: 551 WAAVADETAAAVRYGFRERVLESSNSTSASAYQSSAFDGCVDQSFRHRDVRIELPVRVDF 610

Query: 540 AGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAG-NQLHIEDLT 598
            GGWSDTPPWSLERAGCVLN++I L+   P+GT I TT+ +G+ I+DD   N+++IED T
Sbjct: 611 VGGWSDTPPWSLERAGCVLNMSIKLDDCAPVGTSITTTEQTGIEINDDDTINKVYIEDPT 670

Query: 599 PIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVV 658
            I TPF+ NDPFRLVKSALLVTGV  +K + SMGLQI TW  VPRG+GLGTSSILAAAVV
Sbjct: 671 SIXTPFNSNDPFRLVKSALLVTGVTRDKFLLSMGLQIHTWTGVPRGTGLGTSSILAAAVV 730

Query: 659 KALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVI 718
           K LL+IT+ D SNE VARLVL+LEQLMGTGGGWQDQIGGLYPGIKFT SFPG+PL+LQVI
Sbjct: 731 KGLLKITNRDDSNEIVARLVLVLEQLMGTGGGWQDQIGGLYPGIKFTESFPGVPLKLQVI 790

Query: 719 PLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGR 778
           PL+ASPQLI +LQQRLLVVFTGQVR A QVL+KVVTRYL+RDNLLISSIKRL ELA+ GR
Sbjct: 791 PLMASPQLISDLQQRLLVVFTGQVRPARQVLEKVVTRYLRRDNLLISSIKRLAELARMGR 850

Query: 779 DALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFAL 838
           +ALMNCD+DELG+IMLEAWRLHQELDP+CSN FVDRLF  ADP+CCGYKLVGAGGGGFAL
Sbjct: 851 EALMNCDLDELGEIMLEAWRLHQELDPYCSNTFVDRLFELADPFCCGYKLVGAGGGGFAL 910

Query: 839 LLAKDAESATELRRMLEKD-------SNFNSEVYNWNIY 870
           LL KDA+SA +LR +L+KD       S F  ++YNW ++
Sbjct: 911 LLTKDADSAKKLRDLLQKDPHLEEYGSEFEVKIYNWALF 949

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	873
TAIR|locus:2035362	1055	FKGP "AT1G01220" [Arabidopsis	0.989	0.818	0.711	0.0
UNIPROTKB|Q8N0W3	1084	FUK "L-fucose kinase" [Homo sa	0.398	0.321	0.264	1.3e-35
UNIPROTKB|A6QP44	1079	FUK "FUK protein" [Bos taurus	0.395	0.319	0.272	4.9e-35
UNIPROTKB|E2RR42	1079	FUK "Uncharacterized protein"	0.395	0.319	0.267	4e-33
RGD|1307000	626	Fuk "fucokinase" [Rattus norve	0.298	0.416	0.307	5.7e-31
UNIPROTKB|J3KSP6	575	FUK "Fucokinase, isoform CRA_d	0.398	0.605	0.264	5.3e-28
UNIPROTKB|F1NH45	971	F1NH45 "Uncharacterized protei	0.284	0.255	0.294	5.4e-27
UNIPROTKB|I3LTC2	1064	FUK "Uncharacterized protein"	0.297	0.244	0.260	2.4e-23
WB|WBGene00007745	839	C26D10.4 [Caenorhabditis elega	0.254	0.264	0.348	2.9e-19
DICTYBASE|DDB_G0269678	1404	fuk "fucokinase" [Dictyosteliu	0.288	0.179	0.251	1.1e-18

TAIR|locus:2035362 FKGP "AT1G01220" [Arabidopsis thaliana (taxid:3702)]

 Score = 3197 (1130.5 bits), Expect = 0., P = 0.
 Identities = 618/869 (71%), Positives = 707/869 (81%)

Query:     1 MTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLL 60
             MTGDVLPCFDA  M LPEDA+ I+TVPITLDIASNHGVIV +K   L E+Y +SLV+DLL
Sbjct:   190 MTGDVLPCFDAFKMTLPEDAASIVTVPITLDIASNHGVIVTSKSESLAESYTVSLVNDLL 249

Query:    61 QKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSL 120
             QKP V++L K  AIL DGR LLDTGII+ RG+AW +LV L CSC PM+ EL+ S KEMSL
Sbjct:   250 QKPTVEDLVKKDAILHDGRTLLDTGIISARGRAWSDLVALGCSCQPMILELIGSKKEMSL 309

Query:   121 YEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGD 180
             YEDLVAAWVP++HDWL  RPLG+ LV+ LG+Q+M+SYC Y+L FLHFGTSSEVLDHLSGD
Sbjct:   310 YEDLVAAWVPSRHDWLRTRPLGELLVNSLGRQKMYSYCTYDLQFLHFGTSSEVLDHLSGD 369

Query:   181 VSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNXXXXXXXXXXXX 240
              SG+VGRRHLCSIPATTVSDIAAS+V+LSS+IA GVSIGEDSLIYDS             
Sbjct:   370 ASGIVGRRHLCSIPATTVSDIAASSVILSSEIAPGVSIGEDSLIYDSTVSGAVQIGSQSI 429

Query:   241 XXXTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTF 300
                 + P E   T E SFRFMLPDRHCLWEVPLVG   RV+VYCGLHDNPKNS+ KDGTF
Sbjct:   430 VVGIHIPSEDLGTPE-SFRFMLPDRHCLWEVPLVGHKGRVIVYCGLHDNPKNSIHKDGTF 488

Query:   301 CGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLTLATWLMGLSDHKTG 360
             CGKP +KV  DLGI+ESDLWSS  +Q++CLWNAK+FPIL+YSEML LA+WLMGL D +  
Sbjct:   489 CGKPLEKVLFDLGIEESDLWSSYVAQDRCLWNAKLFPILTYSEMLKLASWLMGLDDSRNK 548

Query:   361 FLLPLWKNSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCE 420
               + LW++S+RVSLEELH SI+F EMC GSSNHQADLA GIAKAC+NYGMLGRNLSQLC 
Sbjct:   549 EKIKLWRSSQRVSLEELHGSINFPEMCNGSSNHQADLAGGIAKACMNYGMLGRNLSQLCH 608

Query:   421 EILQKELSGVDICKDILDLCPRLQDQNSKILPKSRAYQAQVDLLRACKEETTASELEHKV 480
             EILQKE  G++ICK+ LD CP+ Q+QNSKILPKSRAYQ +VDLLRAC +E  A ELEHKV
Sbjct:   609 EILQKESLGLEICKNFLDQCPKFQEQNSKILPKSRAYQVEVDLLRACGDEAKAIELEHKV 668

Query:   481 WAAVADETASAIKYGFREYLLEPLSRGSSAYQNKNDDGFVDHPFQPRTVKVELPVRIDFA 540
             W AVA+ETASA++YGFRE+LLE  S G S   ++N     D  FQPR  KVELPVR+DF 
Sbjct:   669 WGAVAEETASAVRYGFREHLLE--SSGKS--HSENHISHPDRVFQPRRTKVELPVRVDFV 724

Query:   541 GGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPI 600
             GGWSDTPPWSLERAG VLN+AI+LE SLPIGTIIETT   G+ I DDAGN+LHIED   I
Sbjct:   725 GGWSDTPPWSLERAGYVLNMAITLEGSLPIGTIIETTNQMGISIQDDAGNELHIEDPISI 784

Query:   601 ATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKA 660
              TPF+ NDPFRLVKSALLVTG++ E  ++S GL I+TWANVPRGSGLGTSSILAAAVVK 
Sbjct:   785 KTPFEVNDPFRLVKSALLVTGIVQENFVDSTGLAIKTWANVPRGSGLGTSSILAAAVVKG 844

Query:   661 LLQITDGDQSNENVARLVLLLEQLMXXXXXXXXXXXXLYPGIKFTSSFPGIPLRLQVIPL 720
             LLQI++GD+SNEN+ARLVL+LEQLM            LYPGIKFTSSFPGIP+RLQV+PL
Sbjct:   845 LLQISNGDESNENIARLVLVLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPMRLQVVPL 904

Query:   721 LASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDA 780
             LASPQLI EL+QRLLVVFTGQVRLAHQVL KVVTRYLQRDNLLISSIKRLTELAK+GR+A
Sbjct:   905 LASPQLISELEQRLLVVFTGQVRLAHQVLHKVVTRYLQRDNLLISSIKRLTELAKSGREA 964

Query:   781 LMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVXXXXXXXXXXX 840
             LMNC+VDE+G IM EAWRLHQELDP+CSNEFVD+LF F+ PY  G+KLV           
Sbjct:   965 LMNCEVDEVGDIMSEAWRLHQELDPYCSNEFVDKLFEFSQPYSSGFKLVGAGGGGFSLIL 1024

Query:   841 XKDAESATELRRMLEKDSNFNSEVYNWNI 869
              KDAE A ELR+ LE+ + F+ +VYNW+I
Sbjct:  1025 AKDAEKAKELRQRLEEHAEFDVKVYNWSI 1053

GO:0004335 "galactokinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0042352 "GDP-L-fucose salvage" evidence=IDA

GO:0047341 "fucose-1-phosphate guanylyltransferase activity" evidence=IDA

GO:0050201 "fucokinase activity" evidence=IDA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

UNIPROTKB|Q8N0W3 FUK "L-fucose kinase" [Homo sapiens (taxid:9606)]

 Score = 344 (126.2 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
 Identities = 97/367 (26%), Positives = 162/367 (44%)

Query:   520 VDHPFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKM 579
             V+ P   + V  E P R+DF+GGWSDTPP + E  G VL +A+ ++   PIG        
Sbjct:   698 VELPGPGQWVVAECPARVDFSGGWSDTPPLAYELGGAVLGLAVRVDGRRPIGARARRIPE 757

Query:   580 SGVLIS-----DDAGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIH--------EK 626
               + ++     D+   ++    L  +      + P  L+K+A +  G++H        E+
Sbjct:   758 PELWLAVGPRQDEMTVKIVCRCLADLRDYCQPHAPGALLKAAFICAGIVHVHSELQLSEQ 817

Query:   627 LIESMG--LQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL 684
             L+ + G   ++ TW+ +P GSGLGTSSILA   + AL +        E +   VL LEQ+
Sbjct:   818 LLRTFGGGFELHTWSELPHGSGLGTSSILAGTALAALQRAAGRVVGTEALIHAVLHLEQV 877

Query:   685 MXXXXXXXXXXXXLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRL 744
             +            L PGIK   S   +PL+++V  +      + +L   LL+V+TG+ RL
Sbjct:   878 LTTGGGWQDQVGGLMPGIKVGRSRAQLPLKVEVEEVTVPEGFVQKLNDHLLLVYTGKTRL 937

Query:   745 AHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELD 804
             A  +LQ V+  +  R   ++ +   L    +   +      +  LG+ +   W   + + 
Sbjct:   938 ARNLLQDVLRSWYARLPAVVQNAHSLVRQTEECAEGFRQGSLPLLGQCLTSYWEQKKLMA 997

Query:   805 PHCSNEFVDRLFAFADPYCCGYKLVXXXXXXXXXXXXKDAESATELRRMLEKDSNFNSEV 864
             P C    V R+     P+  G  L             K+ +    L  +L K        
Sbjct:   998 PGCEPLTVRRMMDVLAPHVHGQSLAGAGGGGFLYLLTKEPQQKEALEAVLAKTEGLG--- 1054

Query:   865 YNWNIYL 871
              N++I+L
Sbjct:  1055 -NYSIHL 1060

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0050201 "fucokinase activity" evidence=NAS

UNIPROTKB|A6QP44 FUK "FUK protein" [Bos taurus (taxid:9913)]

 Score = 351 (128.6 bits), Expect = 4.9e-35, Sum P(3) = 4.9e-35
 Identities = 101/370 (27%), Positives = 167/370 (45%)

Query:   520 VDHPFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKM 579
             V+ P   + V  E P R+DF+GGWSDTPP + E  G VL +A+ ++S  PIG        
Sbjct:   698 VELPAPGQWVVAECPARVDFSGGWSDTPPLAYELGGAVLGLAVRVDSRRPIGARARRIPE 757

Query:   580 SGVLIS-----DDAGNQL---HIEDLTPIATPFDHNDPFRLVKSALLVTGVI-------- 623
               + ++     D    ++   +++D+     P     P  L+K+A +  G++        
Sbjct:   758 PELRLAVGPRQDQMAVKIVCCNLDDMRGYCQP---QAPGALLKAAFVCAGIVSVSSELSL 814

Query:   624 HEKLIESMG--LQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLL 681
              E+L+ + G   ++ TW+ +P GSGLGTSSILA A + A+ +        E +   VL L
Sbjct:   815 REQLLRAFGGGFELHTWSELPHGSGLGTSSILAGAALAAVQRAAGRVVGAEALIHAVLHL 874

Query:   682 EQLMXXXXXXXXXXXXLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQ 741
             EQ++            L PGIK   S   +PL+++V  +      + +L   LL+V+TG+
Sbjct:   875 EQVLTTGGGWQDQVGGLMPGIKVGRSQAQLPLKVEVEEVAVPEGFVQKLNDHLLLVYTGK 934

Query:   742 VRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQ 801
              RLA  +LQ V+  +  R   ++ + +RL +  +   +A     +  LG+ +   W   +
Sbjct:   935 TRLARNLLQDVLRSWYARLPAVVQNARRLVQQTEECAEAFRQGSLPLLGQCLTSYWEQKK 994

Query:   802 ELDPHCSNEFVDRLFAFADPYCCGYKLVXXXXXXXXXXXXKDAESATELRRMLEKDSNFN 861
              + P C    V  L     PY  G  L             K+      L  +L K     
Sbjct:   995 LMAPGCEPLVVRLLMDVLAPYVHGQSLAGAGGGGFLCLLTKEPRQKEALEAVLAKTKGLG 1054

Query:   862 SEVYNWNIYL 871
                 N++I+L
Sbjct:  1055 ----NYSIHL 1060

GO:0016301 "kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E2RR42 FUK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 345 (126.5 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
 Identities = 99/370 (26%), Positives = 164/370 (44%)

Query:   520 VDHPFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKM 579
             V+ P   + V  E P R+DF+GGWSDTPP + E  G VL +A+ ++   PIG        
Sbjct:   698 VELPAPGQWVVAECPARVDFSGGWSDTPPLAYELGGAVLGLAVRVDGRRPIGARARRIPE 757

Query:   580 SGVLIS-----DDAGNQL---HIEDLTPIATPFDHNDPFRLVKSALLVTGVIH------- 624
               + ++     D    ++    ++DL     P   + P  L+K+A +  G++H       
Sbjct:   758 PELWLAVGPRQDKMAMKIVCWSLDDLQDYCQP---HAPGALLKAAFICAGIVHVGSKLSL 814

Query:   625 -EKLIESMG--LQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLL 681
              E+L+ + G   ++ TW+ +P GSGLGTSSILA   + AL +        E +   VL L
Sbjct:   815 REQLLHTFGGGFELHTWSELPHGSGLGTSSILAGTALAALQRAAGRLVGTEALIHAVLHL 874

Query:   682 EQLMXXXXXXXXXXXXLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQ 741
             EQ++            L PGIK   S   +PL+++V  +      + +L   LL+V+TG+
Sbjct:   875 EQVLTTGGGWQDQVGGLMPGIKVGRSRAQLPLKVEVEEITVPEGFVQKLNDHLLLVYTGK 934

Query:   742 VRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQ 801
              RLA  +LQ V+  +  R   ++ +   L    +   +A     +  LG+ +   W   +
Sbjct:   935 TRLARNLLQDVLRSWYARLPAVVQNAHSLVRHTEECAEAFRQGSLPLLGQCLTTYWEQKK 994

Query:   802 ELDPHCSNEFVDRLFAFADPYCCGYKLVXXXXXXXXXXXXKDAESATELRRMLEKDSNFN 861
              + P C    V R+     P+  G  L             K+      L  +L K     
Sbjct:   995 LMAPGCEPLAVRRMMDVLAPHVHGQSLAGAGGGGFLYLLTKEPRQKETLEAVLAKTEGLG 1054

Query:   862 SEVYNWNIYL 871
                 N++++L
Sbjct:  1055 ----NYSVHL 1060

GO:0016301 "kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

RGD|1307000 Fuk "fucokinase" [Rattus norvegicus (taxid:10116)]

 Score = 328 (120.5 bits), Expect = 5.7e-31, Sum P(2) = 5.7e-31
 Identities = 85/276 (30%), Positives = 136/276 (49%)

Query:   520 VDHPFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGT----IIE 575
             V+ P   + V  E P R+DF+GGWSDTPP + E  G VL +A+ ++   PIG     I+E
Sbjct:   348 VELPAPGQWVVTECPARVDFSGGWSDTPPIAYELGGAVLGLAVRVDGRRPIGAKARRILE 407

Query:   576 TTKMSGV-LISDDAGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIH--------EK 626
                   V    D+   ++    L  +      + P  L+K+A +   ++H        E+
Sbjct:   408 PELWLAVGPRQDEMTVKIVCRSLDDLQDYCQPHAPGALLKAAFICADIVHVNSEVPLHEQ 467

Query:   627 LIESM--GLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL 684
             L+ S   G ++ TW+ +P GSGLGTSSILA A + AL +        E +   VL LEQ+
Sbjct:   468 LLRSFNGGFELHTWSELPHGSGLGTSSILAGAALAALQRAAGRTVGTEALIHAVLHLEQV 527

Query:   685 MXXXXXXXXXXXXLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRL 744
             +            L PGIK   S   +PL+++V  +      +  +   LL+V+TG+ RL
Sbjct:   528 LTTGGGWQDQVSGLMPGIKVGRSRAQLPLKVEVEEITVPENFVQRINDHLLLVYTGKTRL 587

Query:   745 AHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDA 780
             A  +LQ V+  +  R  +++ + +RL    +   +A
Sbjct:   588 ARNLLQDVLRNWYARLPVVVQNARRLVRQTEKCAEA 623

GO:0005524 "ATP binding" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|J3KSP6 FUK "Fucokinase, isoform CRA_d" [Homo sapiens (taxid:9606)]

 Score = 344 (126.2 bits), Expect = 5.3e-28, Sum P(2) = 5.3e-28
 Identities = 97/367 (26%), Positives = 162/367 (44%)

Query:   520 VDHPFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKM 579
             V+ P   + V  E P R+DF+GGWSDTPP + E  G VL +A+ ++   PIG        
Sbjct:   189 VELPGPGQWVVAECPARVDFSGGWSDTPPLAYELGGAVLGLAVRVDGRRPIGARARRIPE 248

Query:   580 SGVLIS-----DDAGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIH--------EK 626
               + ++     D+   ++    L  +      + P  L+K+A +  G++H        E+
Sbjct:   249 PELWLAVGPRQDEMTVKIVCRCLADLRDYCQPHAPGALLKAAFICAGIVHVHSELQLSEQ 308

Query:   627 LIESMG--LQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL 684
             L+ + G   ++ TW+ +P GSGLGTSSILA   + AL +        E +   VL LEQ+
Sbjct:   309 LLRTFGGGFELHTWSELPHGSGLGTSSILAGTALAALQRAAGRVVGTEALIHAVLHLEQV 368

Query:   685 MXXXXXXXXXXXXLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRL 744
             +            L PGIK   S   +PL+++V  +      + +L   LL+V+TG+ RL
Sbjct:   369 LTTGGGWQDQVGGLMPGIKVGRSRAQLPLKVEVEEVTVPEGFVQKLNDHLLLVYTGKTRL 428

Query:   745 AHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELD 804
             A  +LQ V+  +  R   ++ +   L    +   +      +  LG+ +   W   + + 
Sbjct:   429 ARNLLQDVLRSWYARLPAVVQNAHSLVRQTEECAEGFRQGSLPLLGQCLTSYWEQKKLMA 488

Query:   805 PHCSNEFVDRLFAFADPYCCGYKLVXXXXXXXXXXXXKDAESATELRRMLEKDSNFNSEV 864
             P C    V R+     P+  G  L             K+ +    L  +L K        
Sbjct:   489 PGCEPLTVRRMMDVLAPHVHGQSLAGAGGGGFLYLLTKEPQQKEALEAVLAKTEGLG--- 545

Query:   865 YNWNIYL 871
              N++I+L
Sbjct:   546 -NYSIHL 551

GO:0005737 "cytoplasm" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|F1NH45 F1NH45 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 266 (98.7 bits), Expect = 5.4e-27, Sum P(3) = 5.4e-27
 Identities = 76/258 (29%), Positives = 119/258 (46%)

Query:   609 PFRLVKSALLVTGVIH--------EKLIESMG--LQIRTWANVPRGSGLGTSSILAAAVV 658
             P  L+K+A + T ++         ++L+E+ G   ++ TW+ +P GSGLGTSSILA AV+
Sbjct:   679 PGALLKAAFICTQIVQFPSQKPLRDQLMENFGGGFEVHTWSRLPHGSGLGTSSILAGAVM 738

Query:   659 KALLQITDGDQSNENVARLVLLLEQLMXXXXXXXXXXXXLYPGIKFTSSFPGIPLRLQVI 718
              AL +        E++   VL LEQ +            L PGIK   S   +PLR++V 
Sbjct:   739 AALYRAAGKVAGTESLIHAVLHLEQRLTTGGGWQDQVGGLVPGIKIGRSEARLPLRVEVE 798

Query:   719 PLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGR 778
              +L        L   LL+V+TG+ RLA  +LQ VV  +  R   ++ +   L   A+   
Sbjct:   799 EILVPEGFARILSDHLLLVYTGKTRLARNLLQDVVRNWYARLPSIVQNADALVNNAEECA 858

Query:   779 DALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVXXXXXXXXX 838
              AL   ++  +GK +   W+  + + P C    V R+     PY  G  L          
Sbjct:   859 RALRQGNLPLIGKCLDVYWQQKKCMAPGCEPLAVGRMMDALQPYVYGQCLAGAGGGGFLY 918

Query:   839 XXXKDAESATELRRMLEK 856
                K+ +    L ++L K
Sbjct:   919 VLTKEPQQKETLHQILAK 936

GO:0005737 "cytoplasm" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|I3LTC2 FUK "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 239 (89.2 bits), Expect = 2.4e-23, Sum P(3) = 2.4e-23
 Identities = 72/276 (26%), Positives = 121/276 (43%)

Query:   594 IEDLTPIATPFDHNDPFRLVKSALLVTGV--IHEKLI--ESM------GLQIRTWANVPR 643
             ++DL     P   + P  L+K+A +  G+  +H +L   E +      G +++TW+ +P 
Sbjct:   768 LDDLQDYCQP---HAPGALLKAAFICAGILSVHSELSLSEQLLCTFGGGFELQTWSELPH 824

Query:   644 GSGLGTSSILAAAVVKALL---QITDGDQSNENVARLVLLLEQLMXXXXXXXXXXXXLYP 700
             GSGLGTSSILA A + AL    ++       E +   VL LEQ++            L P
Sbjct:   825 GSGLGTSSILAGAALXALAALRRVAGRAVGTEALIHAVLHLEQVLTTGGGWQDQVGGLMP 884

Query:   701 GIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRD 760
             GIK   S   +PL+++V  +      + +L   LL+V+TG+ RLA  +LQ V+  +  R 
Sbjct:   885 GIKVGRSRAQLPLKVEVEEITVPAGFVQKLNDHLLLVYTGKTRLARNLLQDVLRSWYARL 944

Query:   761 NLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFAD 820
               ++ +   L +  +   +A     +  LG+ +   W   + + P C    V  +     
Sbjct:   945 PPVVQNAHNLVQQTEECAEAFRQGSLPRLGQCLTSYWEQKKLMAPGCEPLAVRHMMDALA 1004

Query:   821 PYCCGYKLVXXXXXXXXXXXXKDAESATELRRMLEK 856
             P+  G  L             K+      L  +L K
Sbjct:  1005 PHVHGQSLAGAGGGGFLYLLTKEPRQKEALEAVLAK 1040

GO:0016301 "kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

WB|WBGene00007745 C26D10.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 277 (102.6 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
 Identities = 86/247 (34%), Positives = 129/247 (52%)

Query:   526 PRTVKVELPVRIDFAGGWSDTPP--WSLERAGCVLNVAISLESSLPIGTIIETTKMSGVL 583
             P TV V  PVRIDF GGW DTPP  +S++ A  V+N+AI L+   PI   IE      + 
Sbjct:   478 PSTVIVTAPVRIDFFGGWLDTPPIFFSMDNAA-VVNMAIKLDGKNPIRCFIEKIDKPFIE 536

Query:   584 ISDDAGNQLHIEDLTPIATPFDHNDPFR---LVKSALLVTGV-----IHEKLIESMGLQI 635
             I  D G  +HI+    +   + H+ P     LV + ++  G      I EKL +  GL+I
Sbjct:   537 IVQD-GLFVHIKSDNDLI--YRHDKPSEAGSLVCACIVSLGFTNILDIFEKL-QCCGLRI 592

Query:   636 RTWANVPRGSGLGTSSILAAAVVKALL---QITDGDQS-NENVARLVLLLEQLMXXXXXX 691
              T +++P GSGLGTSSI+A  +++A+     + D   S    +   VL +EQ+M      
Sbjct:   593 NTSSDLPHGSGLGTSSIMACTILRAICAMGSVADNTYSLPHQIVHTVLRVEQIMTTGGGW 652

Query:   692 XXXXXXLYPGIK--FTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVL 749
                   +Y GIK  +     GI       P+  S ++   L++RLL+V+TG+ RLA  +L
Sbjct:   653 QDQCGAIYEGIKKCYYERNHGIVHS----PITISSEVRELLERRLLLVYTGKTRLAKNLL 708

Query:   750 QKVVTRY 756
             Q+V+  +
Sbjct:   709 QEVIRNF 715

GO:0005524 "ATP binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

DICTYBASE|DDB_G0269678 fuk "fucokinase" [Dictyostelium discoideum (taxid:44689)]

 Score = 232 (86.7 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
 Identities = 67/266 (25%), Positives = 129/266 (48%)

Query:   615 SALLVTGVIHEKLIESMG--LQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNE 672
             + ++V   + ++L ES+G  +++ + +++P GSGLGTSSILAA ++ A+        S++
Sbjct:  1117 ACVVVCKTLKQQL-ESLGGGMEVTSSSDLPTGSGLGTSSILAAGLITAMAYAYGYKYSDQ 1175

Query:   673 NVARLVLLLEQLMXXXXXXXXXXXXLYPGIK------FTSSFPGIPLRLQVIPLLASPQL 726
             ++   VL +EQ++            +  G K      F S    I +    +P+  S Q 
Sbjct:  1176 HLFHAVLKVEQMLTTGGGWQDQIGGVLGGFKEGSCTRFHSKSDKIMVTANQLPM--SDQT 1233

Query:   727 ILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDV 786
             I  +   LL+++TG+ RLA  +LQ V+ R+  +   ++S+ + L +  K  ++AL+  D+
Sbjct:  1234 IQTINDHLLLIYTGRTRLARDLLQDVIRRWYAKTQEILSNTEALIQTTKTMKEALIRGDI 1293

Query:   787 DELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVXXXXXXXXXXXXKDAES 846
              E+G  +L+ W   + +        + ++F     Y  GY L             KD  +
Sbjct:  1294 KEIGSCLLQYWNQKKAMAVGSEPTRIVQIFNLVKDYTYGYSLAGAGGGGFMILITKDHCT 1353

Query:   847 ATE--LRRMLEKDSNFNS-EVYNWNI 869
              T+  L+ ++ K     S E+++  I
Sbjct:  1354 VTKNKLQEIIGKVDGLESVEIFDTEI 1379

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LNJ9	FKGP_ARATH	2, ., 7, ., 7, ., 3, 0	0.7465	0.9862	0.8161	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT1G01220	GHMP kinase-related; GHMP kinase-related; FUNCTIONS IN- kinase activity, phosphotransferase activity, alcohol group as acceptor, galactokinase activity, ATP binding; INVOLVED IN- metabolic process, phosphorylation; LOCATED IN- cytoplasm; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Mevalonate and galactokinase (InterPro-IPR006206), GHMP kinase (InterPro-IPR006204), L-fucokinase (InterPro-IPR012887), Ribosomal protein S5 domain 2-type fold (InterPro-IPR014721), GHMP kinase, C-terminal (InterPro-IPR013750); Has 1240 Blast hits to 1200 [...] (1055 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT2G35020	UTP--glucose-1-phosphate uridylyltransferase family protein; UTP--glucose-1-phosphate uridylylt [...] (502 aa)							•		0.929
	AT1G07360	zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; zinc f [...] (481 aa)							•		0.911
	AT3G42850	galactokinase, putative; galactokinase, putative; FUNCTIONS IN- kinase activity, phosphotransfe [...] (964 aa)							•		0.825
	ARA1	ARA1 (ARABINOSE KINASE); ATP binding / L-arabinokinase/ galactokinase; Similar to galactokinase [...] (1039 aa)							•		0.819
	AT5G57655	xylose isomerase family protein; xylose isomerase family protein; FUNCTIONS IN- xylose isomeras [...] (477 aa)						•			0.800
	AT5G51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative; Encodes a putative sorbi [...] (364 aa)						•			0.800
	AT5G51830	pfkB-type carbohydrate kinase family protein; pfkB-type carbohydrate kinase family protein; FUN [...] (343 aa)						•			0.800
	HKL3	HKL3 (HEXOKINASE-LIKE 3); ATP binding / fructokinase/ glucokinase/ hexokinase; Encodes a putati [...] (493 aa)						•			0.800
	HXK1	HXK1 (HEXOKINASE 1); ATP binding / fructokinase/ glucokinase/ hexokinase; Encodes a hexokinase [...] (496 aa)						•			0.800
	AT4G10260	pfkB-type carbohydrate kinase family protein; pfkB-type carbohydrate kinase family protein; FUN [...] (324 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	873
pfam07959	414	pfam07959, Fucokinase, L-fucokinase	1e-127
PRK13412	974	PRK13412, fkp, bifunctional fucokinase/L-fucose-1-	7e-83
COG2605	333	COG2605, COG2605, Predicted kinase related to gala	2e-41
COG1577	307	COG1577, ERG12, Mevalonate kinase [Lipid metabolis	4e-15
TIGR00549	274	TIGR00549, mevalon_kin, mevalonate kinase	3e-11
pfam00288	67	pfam00288, GHMP_kinases_N, GHMP kinases N terminal	9e-10
pfam08544	86	pfam08544, GHMP_kinases_C, GHMP kinases C terminal	4e-07
COG0153	390	COG0153, GalK, Galactokinase [Carbohydrate transpo	5e-07
PRK03817	351	PRK03817, PRK03817, galactokinase; Provisional	1e-05
COG1685	278	COG1685, COG1685, Archaeal shikimate kinase [Amino	0.002
PRK01123	282	PRK01123, PRK01123, shikimate kinase; Provisional	0.003

>gnl|CDD|219665 pfam07959, Fucokinase, L-fucokinase

 Score =  387 bits (996), Expect = e-127
 Identities = 135/361 (37%), Positives = 189/361 (52%), Gaps = 23/361 (6%)

Query: 1   MTGD-VLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDL 59
            +GD +L   DA  +   E  +  +  P +L IA+NHGV V    G L  +    LVDD 
Sbjct: 59  TSGDELLSVGDAPGISFDEPGATALAHPSSLAIATNHGVFVTDSQGSLAHDLTYRLVDDF 118

Query: 60  LQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMV---SELLKSGK 116
           LQKP ++EL + +A+  DG  LLDTGI+++ G+A E L  +  S   M+    EL+ + K
Sbjct: 119 LQKPTIEELVQFNAVGRDGLFLLDTGILSLSGEAVESLFAMDHSSAKMLLTYYELIGALK 178

Query: 117 -EMSLYEDLVAAWVP---AKHDWLMLRPLGKELVSKLG---------KQRMFSYCAYELL 163
            E+SLY D + A  P    +H  L  R + +E   KL             +      +  
Sbjct: 179 CEISLYGDFLLALGPGATREHPRLTSRVMKEESYLKLMRQKIFHLLKGTPLNVVVLPDGG 238

Query: 164 FLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSL 223
           F HFGTS+E LDHL+ D    VG RH  S PA T  DIAA++V+LSS +  GVS+G  S+
Sbjct: 239 FYHFGTSAEYLDHLTSDSGLGVGVRHFSSSPAITPQDIAATSVILSSLLDSGVSVGPGSV 298

Query: 224 IYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVY 283
           +  S++   ++IGS  IV G +        A       LPD  C   V L G  ERV +Y
Sbjct: 299 VEYSHLGGPVRIGSNCIVSGVDILHSEALPAL-----ELPDFVCSLSVRLNGSLERVTMY 353

Query: 284 CGLHDNPKNSLTKDG-TFCGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYS 342
            GL DN K S+  D  TF G  +       GI+++DLW ST   ++CLW A++FP+L+  
Sbjct: 354 FGLQDNLKGSVKTDALTFLGVSFLSCLKKWGIKDTDLWFSTNKSDRCLWTARLFPVLTSL 413

Query: 343 E 343
           E
Sbjct: 414 E 414

In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalyzed by GDP-L-fucose pyrophosphorylase. Length = 414

>gnl|CDD|237379 PRK13412, fkp, bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional

 Score =  286 bits (733), Expect = 7e-83
 Identities = 223/904 (24%), Positives = 369/904 (40%), Gaps = 134/904 (14%)

Query: 2   TGDVLPCFDASTMILPE-DASCI-ITVPITLDIASNHGVIVAAKDGILNENYALSLVDDL 59
           +GDV    +     +PE D  C  + V  +L  A+NHGV V+++        +   +D +
Sbjct: 159 SGDVYIRSEQPLQDIPEADVVCYGLWVDPSL--ATNHGVFVSSRK-------SPERLDFM 209

Query: 60  LQKPNVDEL---AKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGK 116
           LQKP+++EL   +K H  L      +D GI  +  +A E L+  S        E     K
Sbjct: 210 LQKPSLEELGGLSKTHLFL------MDIGIWLLSDRAVELLMKRS------GKEDGGKLK 257

Query: 117 EMSLYEDLVAA----WVPAKHDWLMLRPLGKELVSKLGKQRMFSYCAYELLFLHFGTSSE 172
              LY D   A          +   L      L    G+            F H+GTS E
Sbjct: 258 YYDLYSDFGLALGTHPRIGDDELNALSVAILPLPG--GE------------FYHYGTSRE 303

Query: 173 VLDHLSGDVSGLVGRRHLCSIPATTV---SDIAASAVVLSSKIAHGVSIGEDSL-IYDSN 228
           +       +S  +  ++L +     +        +  V ++ ++  ++    +L I +S+
Sbjct: 304 L-------ISSTLAVQNLVTDQRRIMHRKVKPHPAMFVQNAVLSGKLTAENATLWIENSH 356

Query: 229 ISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHD 288
           +  G ++ S SI+ G   PE + +         LP+  C+  VP VG    V    GL D
Sbjct: 357 VGEGWKLASRSIITGV--PENSWNLD-------LPEGVCIDVVP-VGDRGFVARPYGLDD 406

Query: 289 NPKNSLTKD-GTFCGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEML-T 346
             K +L     T+ G+P+ +     G+   DL      +   L  A +FP+++  E L  
Sbjct: 407 VFKGALADGKTTWFGRPFLEWMEARGLSWPDL----KGRTDDLQAAHLFPVVTSVEELGA 462

Query: 347 LATWLMGLSDHKTGFLLPLWKNSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACI 406
           +  W++     + G    +W  S ++S +E+              +  A+LA   A+   
Sbjct: 463 VLRWMLSEPSLEEG--KEIWLRSEKLSADEI--------------SAYANLARLYAQREA 506

Query: 407 ----NYGMLGRNLSQLCEEILQKELSGVDICKDILDLCPRLQDQNSKILP-KSRAYQAQV 461
               N+  L  N  +     L    +  D  + +LD+   L +    +L   +R ++A++
Sbjct: 507 FRKANWRALAANHEKSVFYQLDLADAAEDFVRLLLDMPEILPEDAPLMLRIHNRMFRARI 566

Query: 462 DLLRA--CKEETTASELEHKVWAAVADETASAIKYGFREYLLEPLSRGSSAYQNKNDDGF 519
             L     +EE      E   +  + D                   R  +       D  
Sbjct: 567 LKLSGARYREE------EQAAFRLLRDGLLDGA-----------YPRKQTPKLEVYSD-- 607

Query: 520 VDHPFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKM 579
                  + V    PVRID AGGW+DTPP+ L   G V+N+AI L    P+   ++    
Sbjct: 608 -------QIVWGRSPVRIDLAGGWTDTPPYCLYSGGNVVNLAIELNGQPPLQVYVKPCSE 660

Query: 580 SG-VLISDDAGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIESM------- 631
              VL S D G    +     +        PF + K+AL + G       ES        
Sbjct: 661 PHIVLRSIDLGAMEVVRTNEELRDYKKVGSPFSIPKAALCLAGFAPRFSAESYASLEEQL 720

Query: 632 -----GLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMG 686
                G++I   A +P GSGLGTSSILAA V+ A+            +    L+LEQL+ 
Sbjct: 721 KAFGSGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLT 780

Query: 687 TGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAH 746
           TGGGWQDQ GG+ PG+K   +  G      V  L  S     E +   L+ +TG  R A 
Sbjct: 781 TGGGWQDQYGGVLPGVKLLQTGAGFAQSPLVRWLPDSLFTQPEYRDCHLLYYTGITRTAK 840

Query: 747 QVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPH 806
            +L ++V          +  +  +   A +  +A+   + +E G+++ + W  ++ LD  
Sbjct: 841 GILAEIVRSMFLNSTAHLQLLHEMKAHALDMYEAIQRGEFEEFGRLVGKTWEQNKALDSG 900

Query: 807 CSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESATELRRML-EKDSNFNSEVY 865
            +   V+ +      Y  GYKL GAGGGG+  ++AKD  +A  +R++L E   N  +   
Sbjct: 901 TNPAAVEAIIELIKDYTLGYKLPGAGGGGYLYMVAKDPGAAERIRKILTENAPNPRARFV 960

Query: 866 NWNI 869
           + ++
Sbjct: 961 DMSL 964

Length = 974

>gnl|CDD|225325 COG2605, COG2605, Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]

 Score =  154 bits (391), Expect = 2e-41
 Identities = 93/330 (28%), Positives = 145/330 (43%), Gaps = 23/330 (6%)

Query: 534 PVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLH 593
           P+RI F GG +D  P+  +  G VLN  I               K   V I     +++ 
Sbjct: 7   PLRITFGGGGTDVEPYCSKHGGAVLNATID--------------KYIYVTIEKGFDDEIR 52

Query: 594 IE-DLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSI 652
           +  D T     +  N+   LV  +L    +          +++ T ++ P GSGLG+SS 
Sbjct: 53  VRYDRTEFVKSYLENEHKPLVVESLKRDFLEFNGGTP---IELHTQSDAPPGSGLGSSSA 109

Query: 653 LAAAVVKALLQITDGDQSNENVARLVLLLEQ-LMGTGGGWQDQIGGLYPGIKFTSSFPGI 711
              A++ AL            +AR    +E+  +   GG QDQ    + G  F       
Sbjct: 110 FVVALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQYAAAFGGFNFMEFRGNG 169

Query: 712 PLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLT 771
              + V PL  + +   EL+ RLL+ +TG  R + +V++  V   +  D   + ++  + 
Sbjct: 170 --EVVVNPLRINRERTAELEARLLLYYTGITRQSSEVIEDQVRNVVDGDEETLEALHEMK 227

Query: 772 ELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFA-DPYCCGYKLVG 830
            LA   +DAL+  D+ E G+I+   W   ++L    SN+ +DR++  A      G KL G
Sbjct: 228 ALAYEMKDALVRNDIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALKNGAYGGKLSG 287

Query: 831 AGGGGFALLLAKDAESATELRRMLEKDSNF 860
           AGGGGF L    D     EL R LEK+  F
Sbjct: 288 AGGGGFLLFFC-DPSKRNELARALEKEQGF 316

Length = 333

>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism]

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 69/290 (23%), Positives = 119/290 (41%), Gaps = 18/290 (6%)

Query: 582 VLISDDAGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANV 641
           V IS+   N++ IE     ++  + ++    +++A+ +   +           +   + +
Sbjct: 34  VTISESDSNKIVIESSDLKSSTLERDEDEGYIQAAVRLASELL-NQSSLKPFSLEIDSEI 92

Query: 642 PRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPG 701
           P G+GLG+S+ ++ AV+KAL      + S E +A+L   +E ++       D     Y G
Sbjct: 93  PIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKASGIDIATITYGG 152

Query: 702 -IKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRD 760
            + F   F    L              +EL   L++  TG      +++  V     +  
Sbjct: 153 LVAFKKGFDFEKLE-------------IELLGTLVIGDTGVPGSTKELVAGVAKLLEEEP 199

Query: 761 NLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFAD 820
            ++   +  + EL +    AL   D +ELG++M     L + L    S   +D L   A 
Sbjct: 200 EVIDPILDAIGELVQEAEAALQTGDFEELGELMNINQGLLKAL--GVSTPELDELVEAAR 257

Query: 821 PY-CCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNSEVYNWNI 869
                G KL GAGGGG  + LAK+ E A  L   LEK       +    I
Sbjct: 258 SLGALGAKLTGAGGGGCIIALAKNEEIAETLSNRLEKAGIALLWIEGVRI 307

Length = 307

>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 55/214 (25%), Positives = 89/214 (41%), Gaps = 23/214 (10%)

Query: 632 GLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGW 691
            L+I   + +P G GLG+S+ +A A+++AL      + S E +A L    E+        
Sbjct: 79  PLEITIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAELANEAEK-------- 130

Query: 692 QDQIGGLYPGIKFTSSFPGIPLRLQ----VIPLLASPQLILELQQRLLVVFTGQVRLAHQ 747
                G   GI   +S  G P+  +        L S           ++  TG      +
Sbjct: 131 --IAHGKPSGIDTATSTSGGPVYFEKGEGEFTKLISLDG------YFVIADTGVSGSTKE 182

Query: 748 VLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHC 807
            + +V     +   L+ S +  + EL    + AL + DV+ LG++M     L + L    
Sbjct: 183 AVARVRQLLERFPELIDSIMDAIGELTLEAKAALEDGDVESLGELMNINQGLLKALG--V 240

Query: 808 SNEFVDRLFAFA-DPYCCGYKLVGAGGGGFALLL 840
           S+  +D+L   A      G KL GAGGGG  + L
Sbjct: 241 SHPKLDQLVEIARKAGALGAKLTGAGGGGCMIAL 274

This model represents mevalonate kinase, the third step in the mevalonate pathway of isopentanyl pyrophosphate (IPP) biosynthesis. IPP is a common intermediate for a number of pathways including cholesterol biosynthesis. This model covers enzymes from eukaryotes, archaea and bacteria. The related enzyme from the same pathway, phosphmevalonate kinase, serves as an outgroup for this clade. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped [Central intermediary metabolism, Other]. Length = 274

>gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain

 Score = 55.3 bits (134), Expect = 9e-10
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query: 635 IRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQD 693
           I   +N+P G+GLG+S+ LA A++ AL ++     S E +ARL L  E  +G   G   
Sbjct: 2   IEIESNIPLGAGLGSSAALAVALLLALNELFGLPLSKEELARLALEAEGAIGVNSGDDV 60

This family includes homoserine kinases, galactokinases and mevalonate kinases. Length = 67

>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 778 RDALMNCDVDELGKIMLEAWRLHQELDPH-CSNEFVDRLFAFADPY-CCGYKLVGAGGGG 835
            +AL   D++ LG+++ E     + L      +  +D L          G KL G+GGG 
Sbjct: 2   LEALREGDLELLGELLNENALSLEPLLYLGILSPELDELLEELRELGALGAKLSGSGGGP 61

Query: 836 FALLLAKDAESATELRRMLEK 856
               L KD E A E+   L +
Sbjct: 62  TVFALFKDEEDAEEVAEALRE 82

This family includes homoserine kinases, galactokinases and mevalonate kinases. Length = 86

>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism]

 Score = 52.7 bits (127), Expect = 5e-07
 Identities = 76/337 (22%), Positives = 118/337 (35%), Gaps = 75/337 (22%)

Query: 555 GCVLNVAISLESSLPIGTIIETTKM-SGV--LISDDAGNQLHIEDLTPIATPFDHNDPFR 611
           G VL  AI        GT +   K   G   L S + GN   I  L       +  D + 
Sbjct: 44  GFVLPCAI------NYGTYVAVAKRDDGKVRLYSANFGNAGDIFFLLLDIAK-EKIDDW- 95

Query: 612 LVKSALLVTGVIHEKL---IESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGD 668
               A  V GVI           GL I    N+P G+GL +S+ L  AV  AL ++ +  
Sbjct: 96  ----ANYVKGVIKALQKRGYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLP 151

Query: 669 QSNENVARLVLLLE-QLMGTGGGWQDQIGGLYPGIKFTSSF--PGIPLRLQVIPLLASPQ 725
                +A++  + E Q +G   G  DQ           S+F      L L    L   P 
Sbjct: 152 LDKAELAKIAQVAENQFVGVNCGIMDQ---------LASAFGKKDHALLLDCRTLEYEPV 202

Query: 726 LILELQQRLLVVFTG---------------QVRLAHQVLQK-------VVTRYL------ 757
                   +++V +                +   A + L         V           
Sbjct: 203 PFPVGGVSIVIVNSNVKRELADSEYNERRAECEEAAEFLGVSIKSLRDVTDEEFAALQAE 262

Query: 758 --------QRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEA-WRLHQELDPHCS 808
                   +R   +++  +R+ E AK    AL + D+ E G++M E+   L  + +  C 
Sbjct: 263 IEVDPKIARRARHVVTENQRVLEAAK----ALRSGDLTEFGELMNESHESLRDDYEVTCP 318

Query: 809 --NEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKD 843
             +  V+   A    Y  G ++ GAG GG  + L  +
Sbjct: 319 ELDTLVEIALAAGGAY--GARMTGAGFGGCVIALVPN 353

Length = 390

>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 84/368 (22%), Positives = 147/368 (39%), Gaps = 82/368 (22%)

Query: 530 KVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAG 589
           KV+ P R++  G  +D   ++    G VL  AI+L       T +E  K    +   +  
Sbjct: 2   KVKSPGRVNLIGEHTD---YND---GYVLPFAINL------YTFLEIEKSEKFIFYSENF 49

Query: 590 NQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVI---HEKLIESMGLQIRTWANVPRGSG 646
           N+            F+ +   +L   A  + GVI    ++  E  G++ +  +N+P G+G
Sbjct: 50  NE---------EKTFELDKLEKLNSWADYIKGVIWVLEKRGYEVGGVKGKVSSNLPIGAG 100

Query: 647 LGTSSILAAAVVKALLQITDGDQSNENVARLVLLLE-QLMGTGGGWQDQIGGLYPGIKFT 705
           L +S+ L  AV  AL +  + + S   +A L    E + +G   G  DQ         F 
Sbjct: 101 LSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVPCGIMDQ---------FA 151

Query: 706 SSF---------PGIPLRLQVIPLLASPQLILELQQRLLVVFTG---------------Q 741
            +F           + L  + +P    P+        +LV  TG               +
Sbjct: 152 VAFGKKDHAIFLDTMTLEYEYVPF---PEDY-----EILVFDTGVKRELASSEYNERRQE 203

Query: 742 VRLAHQVLQKVVTRYLQRDNL--LISSIKR-----LTELAK--NGRDALMNCDVDELGKI 792
              A ++L K  ++ +  ++L  L   +++     L E  +    RDAL   D++ LG++
Sbjct: 204 CEEALKILGKKSSKEVTEEDLSKLPPLLRKRAGYVLRENERVLKVRDALKEGDIETLGEL 263

Query: 793 MLEA-WRLHQELDPHCS--NEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESATE 849
           + E+ W L    +  C   + FV+        Y  G +L GAG GG A+ L  D      
Sbjct: 264 LTESHWDLADNYEVSCEELDFFVEFALE-LGAY--GARLTGAGFGGSAIALV-DKGKFES 319

Query: 850 LRRMLEKD 857
           +   L ++
Sbjct: 320 IGEELLEE 327

Length = 351

>gnl|CDD|224599 COG1685, COG1685, Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 594 IEDLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSIL 653
            ++      P    D  RL++  +       EK    +G+++   + +P GSGL +SS  
Sbjct: 38  SDEGKVRGEPE--GDT-RLIERCVERVR---EKYGIPLGVEVEVESEIPVGSGLKSSSAA 91

Query: 654 AAAVVKALLQITDGDQSNENVARL 677
           + A+VKA+L+    +  +  + RL
Sbjct: 92  SNALVKAVLKALGEEIDDFEILRL 115

Length = 278

>gnl|CDD|234906 PRK01123, PRK01123, shikimate kinase; Provisional

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 609 PFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGD 668
             RL++       ++ E+     G  +RT + +P  SGL +SS  A A V A L     D
Sbjct: 55  DTRLIER---CVELVLERFGIDYGATVRTKSEIPLASGLKSSSAAANATVLATLDALGED 111

Query: 669 QSNENVARL 677
             + ++ RL
Sbjct: 112 LDDLDILRL 120

Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	873
PRK13412	974	fkp bifunctional fucokinase/L-fucose-1-P-guanylylt	100.0
KOG4644	948	consensus L-fucose kinase [Carbohydrate transport	100.0
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	100.0
COG2605	333	Predicted kinase related to galactokinase and meva	100.0
COG0153	390	GalK Galactokinase [Carbohydrate transport and met	100.0
PRK05101	382	galactokinase; Provisional	100.0
PRK00555	363	galactokinase; Provisional	100.0
PRK05322	387	galactokinase; Provisional	100.0
PLN02865	423	galactokinase	100.0
PTZ00290	468	galactokinase; Provisional	100.0
TIGR01220	358	Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ	100.0
TIGR00131	386	gal_kin galactokinase. The galactokinases found by	100.0
PLN02677	387	mevalonate kinase	100.0
TIGR00549	273	mevalon_kin mevalonate kinase. Paracoccus exhibits	100.0
PLN02521	497	galactokinase	100.0
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	100.0
COG1577	307	ERG12 Mevalonate kinase [Lipid metabolism]	100.0
PRK03926	302	mevalonate kinase; Provisional	100.0
PRK03817	351	galactokinase; Provisional	100.0
PTZ00298	328	mevalonate kinase; Provisional	100.0
KOG1511	397	consensus Mevalonate kinase MVK/ERG12 [Lipid trans	99.97
PRK00128	286	ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin	99.94
PLN02451	370	homoserine kinase	99.94
KOG0631	489	consensus Galactokinase [Carbohydrate transport an	99.93
COG0083	299	ThrB Homoserine kinase [Amino acid transport and m	99.93
PRK02534	312	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.93
TIGR01219	454	Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type,	99.92
PRK01212	301	homoserine kinase; Provisional	99.92
TIGR00154	293	ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin	99.92
PTZ00299	336	homoserine kinase; Provisional	99.91
TIGR00191	302	thrB homoserine kinase. P.aeruginosa homoserine ki	99.91
PRK03188	300	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.89
PRK01123	282	shikimate kinase; Provisional	99.88
PRK14614	280	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.88
PRK14615	296	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.87
PRK14608	290	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.86
PRK14616	287	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.86
TIGR01920	261	Shik_kin_archae shikimate kinase. This model repre	99.86
PRK14611	275	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.85
PRK14612	276	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.85
PRK14613	297	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.84
PRK14609	269	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.82
PRK00343	271	ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin	99.82
COG1947	289	IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p	99.82
TIGR00144	324	beta_RFAP_syn beta-RFAP synthase. This protein fam	99.8
PRK14610	283	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.8
PRK00650	288	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.75
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	99.72
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	99.68
PRK05905	258	hypothetical protein; Provisional	99.66
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	99.6
PRK04181	257	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.58
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	99.57
COG1685	278	Archaeal shikimate kinase [Amino acid transport an	99.53
PLN02241	436	glucose-1-phosphate adenylyltransferase	99.53
TIGR01240	305	mevDPdecarb diphosphomevalonate decarboxylase. Alt	99.47
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	99.47
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.45
COG3890	337	ERG8 Phosphomevalonate kinase [Lipid metabolism]	99.45
COG1907	312	Predicted archaeal sugar kinases [General function	99.4
PF00288	67	GHMP_kinases_N: GHMP kinases N terminal domain; In	99.39
COG4542	293	PduX Protein involved in propanediol utilization,	99.27
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	99.26
COG1829	283	Predicted archaeal kinase (sugar kinase superfamil	99.25
PF08544	85	GHMP_kinases_C: GHMP kinases C terminal ; InterPro	99.15
COG3407	329	MVD1 Mevalonate pyrophosphate decarboxylase [Lipid	99.06
PLN02407	343	diphosphomevalonate decarboxylase	99.04
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	99.0
KOG4519	459	consensus Phosphomevalonate kinase [Lipid transpor	98.95
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	98.83
PF10509	52	GalKase_gal_bdg: Galactokinase galactose-binding s	98.79
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	98.75
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	98.63
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	98.6
KOG1461	673	consensus Translation initiation factor 2B, epsilo	98.5
KOG2833	395	consensus Mevalonate pyrophosphate decarboxylase [	98.48
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	98.47
KOG1537	355	consensus Homoserine kinase [Amino acid transport	98.46
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	98.43
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	98.37
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	98.37
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	98.34
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	98.3
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	98.27
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	98.22
KOG1462	433	consensus Translation initiation factor 2B, gamma	98.14
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	98.1
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	98.01
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	97.96
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	97.9
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	97.9
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	97.83
KOG1461	673	consensus Translation initiation factor 2B, epsilo	97.75
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	97.62
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	97.58
KOG1462	433	consensus Translation initiation factor 2B, gamma	97.54
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	97.46
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	97.43
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	97.36
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	97.33
TIGR01099	260	galU UTP-glucose-1-phosphate uridylyltransferase.	97.17
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	97.17
TIGR02623	254	G1P_cyt_trans glucose-1-phosphate cytidylyltransfe	97.07
PRK15480	292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	97.0
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	96.9
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	96.85
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	96.81
cd04197	217	eIF-2B_epsilon_N The N-terminal domain of epsilon	96.77
cd02509	274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	96.77
TIGR01207	286	rmlA glucose-1-phosphate thymidylyltransferase, sh	96.72
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	96.63
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	96.58
cd02541	267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	96.36
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	96.28
PRK13389	302	UTP--glucose-1-phosphate uridylyltransferase subun	96.25
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	96.21
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	96.14
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	96.09
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	96.08
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	96.08
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	96.07
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	96.07
cd02524	253	G1P_cytidylyltransferase G1P_cytidylyltransferase	96.03
TIGR01105	297	galF UTP-glucose-1-phosphate uridylyltransferase,	95.82
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	95.79
PRK10122	297	GalU regulator GalF; Provisional	95.79
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	95.64
PLN02472	246	uncharacterized protein	95.57
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	95.5
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	95.4
PLN02296	269	carbonate dehydratase	95.4
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	95.28
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	95.28
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	95.11
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	95.09
cd04189	236	G1P_TT_long G1P_TT_long represents the long form o	95.01
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	94.99
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	94.93
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	94.88
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	94.87
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	94.77
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	94.73
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	94.67
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	94.58
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	94.48
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	94.42
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	94.37
PRK13627	196	carnitine operon protein CaiE; Provisional	94.32
PLN02241	436	glucose-1-phosphate adenylyltransferase	94.28
PLN02296	269	carbonate dehydratase	94.15
cd06426	220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	94.1
cd02507	216	eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma	93.98
PLN02472	246	uncharacterized protein	93.79
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	93.77
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	93.64
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	93.52
PRK13627	196	carnitine operon protein CaiE; Provisional	93.5
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	93.41
cd04183	231	GT2_BcE_like GT2_BcbE_like is likely involved in t	93.33
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	93.32
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	93.16
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	93.07
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	93.06
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	93.05
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	92.87
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	92.73
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	92.7
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	92.59
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	92.53
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	92.11
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	91.93
cd02523	229	PC_cytidylyltransferase Phosphocholine cytidylyltr	91.93
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	91.91
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	91.91
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	91.87
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	91.87
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	91.83
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	91.39
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	91.39
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	91.21
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	91.16
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	90.86
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	90.85
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	90.68
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	90.55
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	89.93
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	89.64
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	89.39
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	89.38
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	89.15
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	89.03
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	88.75
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	88.55
PLN02694	294	serine O-acetyltransferase	88.49
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	88.29
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	88.07
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	88.05
PRK10092	183	maltose O-acetyltransferase; Provisional	87.71
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	87.26
PLN02357	360	serine acetyltransferase	86.36
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	86.12
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	85.69
COG1210	291	GalU UDP-glucose pyrophosphorylase [Cell envelope	85.58
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	85.42
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	85.41
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	85.36
PRK10502	182	putative acyl transferase; Provisional	85.16
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	85.13
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	84.53
PLN02694	294	serine O-acetyltransferase	83.98
PRK10191	146	putative acyl transferase; Provisional	83.82
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	83.65
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	83.54
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	83.45
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	83.39
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	83.06
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	82.99
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	82.84
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	82.71
PRK10092	183	maltose O-acetyltransferase; Provisional	82.29
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	81.93
PLN02739	355	serine acetyltransferase	81.26
COG0836	333	{ManC} Mannose-1-phosphate guanylyltransferase [Ce	80.87
PLN02357	360	serine acetyltransferase	80.83
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	80.8
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	80.48
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	80.31
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	80.11

>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional

Probab=100.00  E-value=1.1e-132  Score=1190.10  Aligned_cols=785  Identities=26%  Similarity=0.391  Sum_probs=680.1

Q ss_pred             CCCCeeeccCCCcCcCCCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCcc
Q 002861            1 MTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRA   80 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~   80 (873)
                      +||||+++||.++|.+|++|++|+++|+++++|++||||++|++.|+       ++++||||||.++|   +++++++.+
T Consensus       158 ~~gDv~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~-------~~~~~LqKps~eel---~a~~~~~~~  227 (974)
T PRK13412        158 ASGDVYIRSEQPLQDIPEADVVCYGLWVDPSLATNHGVFVSSRKSPE-------RLDFMLQKPSLEEL---GGLSKTHLF  227 (974)
T ss_pred             EecchhhhccccccCCCccCeEEEEeccChhhccCceEEEeCCCChH-------HHHHHhcCCCHHHH---HhhhcCCeE
Confidence            58999999999999999999999999999999999999999999653       57999999999999   579999999


Q ss_pred             ceeeceeeecchHHHHHHhhhcCCchhhhhhhccccchhhhHHHHhhcccccccccccCC-CchhHHhhhhcCcceEEEe
Q 002861           81 LLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWVPAKHDWLMLRP-LGKELVSKLGKQRMFSYCA  159 (873)
Q Consensus        81 l~~~Gi~~f~~~~~~~ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~~~~~~~Y~~~~p-vgd~~~~~l~~~~i~~~~~  159 (873)
                      ++|+|+|+|++++++.|++..+.      +..+..|+||+|+||++|||+        +| ..|..|+.++   +-.+++
T Consensus       228 l~D~g~~~~~~~a~~~L~~~~~~------~~~~~~~~~dlY~Df~~aLg~--------~~~~~~~el~~l~---~~i~~L  290 (974)
T PRK13412        228 LMDIGIWLLSDRAVELLMKRSGK------EDGGKLKYYDLYSDFGLALGT--------HPRIGDDELNALS---VAILPL  290 (974)
T ss_pred             EEeeeEEEEChHHHHHHHHhhhc------ccCCcceeeehHHHHHHhcCC--------CCCcchhhhcccc---eEEEEc
Confidence            99999999999999999975432      223558999999999999974        22 1244555444   448999


Q ss_pred             cCceeEEecCcHHHHh------hhccCCccccccceeeecCCCcccccccceeEEeeeecCCceeCCC-cEEEEceeCCC
Q 002861          160 YELLFLHFGTSSEVLD------HLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGED-SLIYDSNISSG  232 (873)
Q Consensus       160 p~a~F~h~gt~~e~l~------~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~-s~Ve~s~l~~~  232 (873)
                      ++++||||||++|||+      +++.+|++++++++ ++.         +.++|+||+++++++++++ .|||||+|+++
T Consensus       291 ~~~~F~H~GTs~E~l~~~~~~q~~~~~~~~i~~~~~-~~~---------~~~~v~ns~~~~~~s~~~~s~~vE~s~l~~~  360 (974)
T PRK13412        291 PGGEFYHYGTSRELISSTLAVQNLVTDQRRIMHRKV-KPH---------PAMFVQNAVLSGKLTAENATLWIENSHVGEG  360 (974)
T ss_pred             CCceeEEecCcHHHhcCchhHHHHhhhhhhhhcccc-CCC---------CceEEEeeEecCCcccCCCeEEEEeeEecCC
Confidence            9999999999999999      67777777766652 222         2368999999999999998 55999999999


Q ss_pred             eEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeeeeeeecCcceEEEEEeccCCCCCCCCCCCC-cccCcchHHHHHH
Q 002861          233 IQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDG-TFCGKPWQKVWHD  311 (873)
Q Consensus       233 v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~~v~l~~~~~~v~~~~G~~D~~k~~~~~~~-t~~g~~~~~~l~~  311 (873)
                      |+||++|||+||+         +|+|+++||+|+|+|.||+ ++..||+|+||++||||++++++. +|||+||.+||+.
T Consensus       361 ~~ig~~~Iisgv~---------~~~~~~~vP~~~ci~~vpl-~~~~~v~r~ygi~D~~K~s~~~~~~~~~G~~~~~~l~~  430 (974)
T PRK13412        361 WKLASRSIITGVP---------ENSWNLDLPEGVCIDVVPV-GDRGFVARPYGLDDVFKGALADGKTTWFGRPFLEWMEA  430 (974)
T ss_pred             eEEcCCcEEeccc---------ccccceecCCCcEEEEEEc-CCCcEEEEEecCCcccccccccccCeecCccHHHHHHH
Confidence            9999999999997         4679999999999999999 789999999999999999997544 6999999999999


Q ss_pred             hCCCccccccCCCCCccccccccccccccchhhHH-HHHHHhcCCCCCCCcccccccccccccHHHHhccCChHHHhhhc
Q 002861          312 LGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLT-LATWLMGLSDHKTGFLLPLWKNSRRVSLEELHRSIDFSEMCTGS  390 (873)
Q Consensus       312 ~gi~~~dlw~~~~~~~~~Lw~A~LFPv~~~~~~l~-~~~wm~~~~~~~~~~~~~~w~~~~r~S~~e~~~~~d~~~~~~~~  390 (873)
                      |||+++|+|++    .+|||||+|||||++.|++. +++||++.....++  .++|++++|+|++|+++++|+++|+++|
T Consensus       431 ~gl~~~~l~~~----~~~Lw~A~LFPv~~~~e~~~~~~~~m~~~~~~~~~--~~lw~~~~r~S~~e~~~~~d~~~l~~~r  504 (974)
T PRK13412        431 RGLSWPDLKGR----TDDLQAAHLFPVVTSVEELGAVLRWMLSEPSLEEG--KEIWLRSEKLSADEISAYANLARLYAQR  504 (974)
T ss_pred             cCCCHHHhcCC----ccchhccccccccCcHHHHHHHHHHHhhccccccc--hhhhcccceecHHHHhhccCHHHHHHHH
Confidence            99999999953    48999999999999999976 89999986544444  5789999999999999999999999999


Q ss_pred             chhhhhhhHHHHHHHHhhhhhhhhhHHHHHHHhccCccchhhhHHHhhhcccccCCCCCCcc-hhhhHHHHHHHHHhcCc
Q 002861          391 SNHQADLAAGIAKACINYGMLGRNLSQLCEEILQKELSGVDICKDILDLCPRLQDQNSKILP-KSRAYQAQVDLLRACKE  469 (873)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~  469 (873)
                      +          .+++.||+.+++|++++++||+++.+++.+.++..|..++.+..++|...+ .+|||++++..+  +|+
T Consensus       505 ~----------~~~~~~~~~l~~n~~~~~~~ql~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~  572 (974)
T PRK13412        505 E----------AFRKANWRALAANHEKSVFYQLDLADAAEDFVRLLLDMPEILPEDAPLMLRIHNRMFRARILKL--SGA  572 (974)
T ss_pred             H----------HHHHhhHHHHHHhhhhhhhhhhhHHHHHHHHHHhcCCCcccchhhcccccchhHHHHHHHHHHh--hcc
Confidence            8          667779999999999999999999999999999999988888888888888 889999986544  564


Q ss_pred             hhhHhHHHHHHHHHhHHHHHHHHhhccccccccccccccccccccCCCCCCCCCCCCCeEEEEeceEEEeecccccCCCc
Q 002861          470 ETTASELEHKVWAAVADETASAIKYGFREYLLEPLSRGSSAYQNKNDDGFVDHPFQPRTVKVELPVRIDFAGGWSDTPPW  549 (873)
Q Consensus       470 ~~~~~~~e~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~aP~Rv~L~G~~tD~~~~  549 (873)
                      .  ....|+++|..+++++..+.        ..+++.       |..+.+.+|.     +++++|+||||+|||||+|||
T Consensus       573 ~--~~~~~~~~f~~~~~~~~~~~--------~~~~~~-------~~~~v~~~~~-----~~~~aPgRVnLiGghTDtPpy  630 (974)
T PRK13412        573 R--YREEEQAAFRLLRDGLLDGA--------YPRKQT-------PKLEVYSDQI-----VWGRSPVRIDLAGGWTDTPPY  630 (974)
T ss_pred             c--cchHHHHHHHHHHHHhhhcc--------cccccC-------CCcccccCcE-----EEEeCceEEeecccCcCCCcc
Confidence            3  34779999998888876544        333333       6777888885     888999999999999999999


Q ss_pred             ccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCC-CceeeecCCCCCCCCCCCChhHHHHHHHHHhhhhhh---
Q 002861          550 SLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAG-NQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIHE---  625 (873)
Q Consensus       550 ~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~-~~~~~~~l~~l~~p~~~~~~~~~~kaal~~~~~~~~---  625 (873)
                      ++++||.|+|+||++++++|+.++++++++..|++.+.+. ....+.+.+++.++..+++|++|+|+|+...|+++.   
T Consensus       631 ~~ynGG~VLn~AId~~g~~pi~v~v~~~~d~~irl~S~d~~~~~~v~~~~~l~~~~~~~~~~~~~K~al~~~G~~~~~~~  710 (974)
T PRK13412        631 CLYSGGNVVNLAIELNGQPPLQVYVKPCSEPHIVLRSIDLGAMEVVRTNEELRDYKKVGSPFSIPKAALCLAGFAPRFSA  710 (974)
T ss_pred             cCcCCcEEEEEEEeCCCCccEEEEEEECCCCeEEEEECCCCCceEEecchhhcccccccchHhhhhhhheeccccccccc
Confidence            9999999999999999999999999999888898877443 333445556666666678899999999987665541   


Q ss_pred             --------cccc-ccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCChhhhhHh
Q 002861          626 --------KLIE-SMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIG  696 (873)
Q Consensus       626 --------~~~~-~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~~G~~Dq~~  696 (873)
                              .... ..|++|++.++||.|+|||||||+++|++.|++++++.++++++|+++|..+|+.+++++|||||++
T Consensus       711 ~~~~~l~e~l~~~G~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~ls~~ela~~A~~~E~~lhg~~g~qDq~~  790 (974)
T PRK13412        711 ESYASLEEQLKAFGSGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGWQDQYG  790 (974)
T ss_pred             chhHHHHHHHHhcCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchhhhhh
Confidence                    1111 2589999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 002861          697 GLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKN  776 (873)
Q Consensus       697 ~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~  776 (873)
                      +++||+++++..++......++|++.+.+.+.+++.+++|+|||++|.|++++++|++++..+++.....+++|.+++.+
T Consensus       791 a~~GG~~~i~~~~~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTGitR~T~~iV~~Vv~~~~~~~~~~~~~l~~ig~La~e  870 (974)
T PRK13412        791 GVLPGVKLLQTGAGFAQSPLVRWLPDSLFTQPEYRDCHLLYYTGITRTAKGILAEIVRSMFLNSTAHLQLLHEMKAHALD  870 (974)
T ss_pred             HhcCCeEEEEecCCcccCcceeecCcchhhhhhccCcEEEEECCCeeeHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            99999999886654333345677776665566678899999999999999999999988887777777789999999999


Q ss_pred             HHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHccCCceEEecCCCccceeEEEeCCcchHHHHHHHHHh
Q 002861          777 GRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESATELRRMLEK  856 (873)
Q Consensus       777 ~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~  856 (873)
                      +++||++||++.||++|+++|++++.|.+++++|.+++|++.++++++|+|+||||+|||+++++++++.+++++++|++
T Consensus       871 a~~ALe~gD~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li~~A~~gAlGaKLTGAGGGGcvI~Lak~~~~a~~I~~~L~~  950 (974)
T PRK13412        871 MYEAIQRGEFEEFGRLVGKTWEQNKALDSGTNPAAVEAIIELIKDYTLGYKLPGAGGGGYLYMVAKDPGAAERIRKILTE  950 (974)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHcCCcEEEecccCcccEEEEEECChhhHHHHHHHHHh
Confidence            99999999999999999999999999988899999999999998899999999999999999999888889999999998


Q ss_pred             cCCCceEEE-EEeeccC
Q 002861          857 DSNFNSEVY-NWNIYLE  872 (873)
Q Consensus       857 ~~~~~v~v~-~~~i~~~  872 (873)
                      .......+| +++++.+
T Consensus       951 ~~~~~~~~~~~~~l~~~  967 (974)
T PRK13412        951 NAPNPRARFVDMSLSDK  967 (974)
T ss_pred             cccCCceeEEEEEECCC
Confidence            766555555 8877654

>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.8e-88  Score=723.64  Aligned_cols=823  Identities=23%  Similarity=0.313  Sum_probs=670.6

Q ss_pred             CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccceeeceeeecchHHHH
Q 002861           17 PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE   96 (873)
Q Consensus        17 ~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~   96 (873)
                      +--+..++++|.++.+|.+|||+++|++|         .|.++-+..+..+++.  |+.++|++....|+++|+-...++
T Consensus        30 sfRga~~ial~gs~a~a~nhgV~lsDPqg---------lvldi~~Qgaeaeiqr--cvrpdgri~~~nGvVF~svesaer   98 (948)
T KOG4644|consen   30 SFRGALTIALEGSLADANNHGVLLSDPQG---------LVLDITLQGAEAEIQR--CVRPDGRIKGGNGVVFDSVESAER   98 (948)
T ss_pred             hcCCceEEEcCCchhhhhceEEEEecCcc---------ceeeeeeccchhhhhc--ccCCCcccccCceEEEEeeechhh
Confidence            44677889999999999999999999999         8999999999999884  899999999999999999999999


Q ss_pred             HHhhhcCC-----chhhhhhhccccchhhhHHHHhhcc--cccccccccCCC--c--h------------hHHhhhhcCc
Q 002861           97 LVMLSCSC-----PPMVSELLKSGKEMSLYEDLVAAWV--PAKHDWLMLRPL--G--K------------ELVSKLGKQR  153 (873)
Q Consensus        97 ll~~~~~~-----~d~g~d~~~~~~~~~~y~df~~~~~--~~~~~Y~~~~pv--g--d------------~~~~~l~~~~  153 (873)
                      +|.||.++     .+.+.|..+.|.++++|+|++++..  .+++||.-.+|.  |  |            .+|..++.+|
T Consensus        99 llathvsppldaCs~i~~dSgarpvqlslffdilHc~ae~V~redflvgrppelgqgdaD~agylqsaraqlWke~kdq~  178 (948)
T KOG4644|consen   99 LLATHVSPPLDACSKIAADSGARPVQLSLFFDILHCGAEIVGREDFLVGRPPELGQGDADAAGYLQSARAQLWKEEKDQE  178 (948)
T ss_pred             hhhcccCcchhhhhHhhcccCCCcchhhhhhhhhhhhhhcccchhhcccCCccccCCcchhhhHHHHHHHHHHHHhhcCc
Confidence            99999765     6788899999999999999999886  488999988773  3  3            2466688999


Q ss_pred             ceEEEecCceeEEecC-cHHHHhhhccCCccccccceeeecCCCcccccccceeEEeeeecCCceeCCCcEEEEceeCCC
Q 002861          154 MFSYCAYELLFLHFGT-SSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSG  232 (873)
Q Consensus       154 i~~~~~p~a~F~h~gt-~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~  232 (873)
                      +.+..+|.+.+-.|.. ..|+|++|+---   -...++.+|.+.+..-+..++.+..+.+...|..|+||+++||++.+.
T Consensus       179 L~Ma~l~q~S~s~~TssaseFL~sltlpg---a~gaQi~Hsqveeqqilaa~n~l~~c~~dG~v~~gpgsvlqhcH~e~p  255 (948)
T KOG4644|consen  179 LNMADLPQDSISGFTSSASEFLESLTLPG---AKGAQIDHSQVEEQQILAADNKLSGCEFDGEVAGGPGSVLQHCHFEEP  255 (948)
T ss_pred             cceeecCCCcccccchhHHHHHHhccCCC---CccccccchhhhhheeeecCCceeeeEecccccCCCccccccccccCc
Confidence            9889999888776644 689999988311   122345666666555566788888889999999999999999999999


Q ss_pred             eEECCCcEEeCcCCCCCC-CCCccCccceeeCCCeeeeeeeecCcceEEEEEeccCCCCCCCCCCCCcccCcchHHHHHH
Q 002861          233 IQIGSLSIVVGTNFPEEA-GSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTFCGKPWQKVWHD  311 (873)
Q Consensus       233 v~IG~~~iisg~~i~~~~-~~~~~~~~~~~iP~~~~i~~v~l~~~~~~v~~~~G~~D~~k~~~~~~~t~~g~~~~~~l~~  311 (873)
                      .+||.+|++.+.+-.... +.. +.-.++.+..++    ..+.+....++++.|.-|.|...  ..+++++.+|++||+.
T Consensus       256 iHigaGciv~gLdaAhskalhg-relrdL~Lqghh----t~lh~~Pg~AfTllGrlDSwerq--gag~~lnl~~SeFF~~  328 (948)
T KOG4644|consen  256 IHIGAGCIVLGLDAAHSKALHG-RELRDLFLQGHH----TLLHEFPGAAFTLLGRLDSWERQ--GAGNVLNLKLSEFFDF  328 (948)
T ss_pred             ceeeeeeEEeccchhhhhhhcc-hHHHHHHhccch----hhhccCCchhheeeeccchHhhc--CCCceecccHHHHHHH
Confidence            999999999998865421 111 000246666655    34556667889999999999843  5678999999999999


Q ss_pred             hCCCccccccCC-CCCccccccccccccccchhh--HHHHHHHhcCCCCCCCcccccccccccccHHHHhccCChHHHhh
Q 002861          312 LGIQESDLWSST-GSQEKCLWNAKIFPILSYSEM--LTLATWLMGLSDHKTGFLLPLWKNSRRVSLEELHRSIDFSEMCT  388 (873)
Q Consensus       312 ~gi~~~dlw~~~-~~~~~~Lw~A~LFPv~~~~~~--l~~~~wm~~~~~~~~~~~~~~w~~~~r~S~~e~~~~~d~~~~~~  388 (873)
                      +|.+..|+|++. -+.+.|+-.||||||.+...+  ..+.+||++ .-....+.++.|+.++|+|++++..+.|-.+-++
T Consensus       329 ~g~rawdlwdpeT~paE~c~~~akLfpviH~~re~gpQDll~~ld-h~edg~ea~ka~ras~~i~~eQlk~cld~aa~la  407 (948)
T KOG4644|consen  329 FGARAWDLWDPETCPAEECFIKAKLFPVIHEKREEGPQDLLNALD-HIEDGFEAFKARRASLDIIEEQLKKCLDHAANLA  407 (948)
T ss_pred             hhhhhhcccCcccCchHHHhhhhhcccccChhhhcCHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            999999999887 356679999999999999766  458999975 2233467899999999999999999988555444


Q ss_pred             hcch---------------hhhhhh-HHHHHHHHhhhhhhhhhHHHHHHHhccCccchh-----hhHHHhhhcc----cc
Q 002861          389 GSSN---------------HQADLA-AGIAKACINYGMLGRNLSQLCEEILQKELSGVD-----ICKDILDLCP----RL  443 (873)
Q Consensus       389 ~~~~---------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----~~  443 (873)
                      |+..               .|.+|. -++..+....+.-+-....+++...+..||.+.     .+++.|+|++    ++
T Consensus       408 q~~DiFf~ealhka~h~leaRqdLSi~~LI~aa~ke~cpg~L~a~lDQiaagagdP~laaqaiac~ad~Lgc~adGkGGL  487 (948)
T KOG4644|consen  408 QLLDIFFGEALHKADHELEARQDLSICNLIDAASKEACPGILKALLDQIAAGAGDPELAAQAIACAADALGCAADGKGGL  487 (948)
T ss_pred             HHHHHHHHhhhccchhHHHHHhhcchhhhhhHhhhhcCchHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhhhhcCCCcc
Confidence            4431               344555 444677777777777777777777778888654     3788899884    45


Q ss_pred             cCCCCCCcchhhhHHHHHHHHHhcCchhh---HhHHHHHH-HHHhHHHHHH-HHhhccccccccccccccc-cccccCCC
Q 002861          444 QDQNSKILPKSRAYQAQVDLLRACKEETT---ASELEHKV-WAAVADETAS-AIKYGFREYLLEPLSRGSS-AYQNKNDD  517 (873)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~e~~~-~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~-~~~~~~~~  517 (873)
                      |.+++.+..|.|.|.+    | ++||...   +...|+.+ |.+.|..|++ |+|||++.|++++..+++. .|+   +.
T Consensus       488 RnGPAaNPe~~kpfs~----l-ecgdlaa~~eala~E~dKnWlS~Pa~liRAARH~Ega~Qi~IRea~~~a~hf~---S~  559 (948)
T KOG4644|consen  488 RNGPAANPEFEKPFSL----L-ECGDLAADFEALADEIDKNWLSEPAHLIRAARHLEGAAQICIREATDEACHFR---SL  559 (948)
T ss_pred             cCCCCCCchhcCchhh----h-cccchhhhHHHHHHHHHhhhhcChHHHHHHHHHhhhhHHHHHHHHHHHHHHHh---Hh
Confidence            6677777789999888    6 6887554   66667665 9999999966 5579999999999999876 455   44


Q ss_pred             CCCCCCCCCC-eEEEEeceEEEeecccccCCCcccCCC-CeEEEeeeecccccceeEEEEEecCCc----EEEEeC-CCC
Q 002861          518 GFVDHPFQPR-TVKVELPVRIDFAGGWSDTPPWSLERA-GCVLNVAISLESSLPIGTIIETTKMSG----VLISDD-AGN  590 (873)
Q Consensus       518 ~~~~~~~~~~-~v~v~aP~Rv~L~G~~tD~~~~~~~~g-G~Vl~~AI~l~~~~pi~~~v~~~~~~~----i~i~~~-~~~  590 (873)
                      ...++|-.+. ||++.||+||||+|||+|+||++++.+ |.|+++||.++++.||++.+++.+++.    |.+.-| ...
T Consensus       560 e~~elPg~g~s~Viae~PaRiDF~GGW~DTPPiafel~n~AVlglAiklDGk~PIga~a~kI~ePelwlai~~rQDel~V  639 (948)
T KOG4644|consen  560 EIGELPGAGPSTVIAEAPARIDFFGGWLDTPPIAFELDNAAVLGLAIKLDGKNPIGAFAEKIDEPELWLAIEIRQDELFV  639 (948)
T ss_pred             hhccCCCCCCceEEEecceeeeecccccCCCCeeEeccccceeeeEEEecCCCccchhhhcCCCchheeeeeeeccceEE
Confidence            5566776555 999999999999999999999999976 899999999999999999999987763    333222 111


Q ss_pred             cee---eecCCCCCCCCCCCChhHHHHHHHHHhhhhhh--------cc--ccccCEEEEEeeccCCCCCCChHHHHHHHH
Q 002861          591 QLH---IEDLTPIATPFDHNDPFRLVKSALLVTGVIHE--------KL--IESMGLQIRTWANVPRGSGLGTSSILAAAV  657 (873)
Q Consensus       591 ~~~---~~~l~~l~~p~~~~~~~~~~kaal~~~~~~~~--------~~--~~~~G~~i~i~s~IP~GsGLGSSSAlavA~  657 (873)
                      .++   ..|+.++.+|+.   +..+.++++.+.++++-        .+  ....||+|+.+|++|.|||||+||+++..+
T Consensus       640 ~I~crclaDlrD~cqpHa---~gal~~aafiCA~IVhl~sel~i~d~~~k~f~~GfeihT~SdLPHGSGLGTSSIlA~Ta  716 (948)
T KOG4644|consen  640 HIKCRCLADLRDLCQPHA---KGALEAAAFICACIVHLGSELNILDIFEKLFCCGFEIHTSSDLPHGSGLGTSSILACTA  716 (948)
T ss_pred             EEEeehhhhhHHhhccCC---CchhhhhhhhheeeeeccchhhHHHHHHHHhcCceEeeccccCCCCCCcchHHHHHHHH
Confidence            111   235666776654   45577888777665431        11  234799999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCHHHHHH----HHHHHHHHcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcE
Q 002861          658 VKALLQITDGDQSNENVAR----LVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQR  733 (873)
Q Consensus       658 l~Al~~~~g~~ls~~eL~~----la~~~E~~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~  733 (873)
                      ++|+....|.....+.|.+    .+.++||+++|+||||||.++++.|++..+++...+..+.++++.+|+++.++++.+
T Consensus       717 LaAi~~aagr~~gTeaLiHailHtvlrlEQilTTGGGWQDQ~G~im~GIK~gr~rael~~~ie~eeiTipe~f~ekL~dh  796 (948)
T KOG4644|consen  717 LAAICAAAGRADGTEALIHAILHTVLRLEQILTTGGGWQDQCGAIMEGIKKGRCRAELNHGIEHEEITIPEEFREKLEDH  796 (948)
T ss_pred             HHHHHHhhccccchhHhHHHHHHHHHHHHHHhhcCCchhhhccchhhhhhhccchhhccCCceeeeecCCHHHHHHHhhc
Confidence            9999999998777666544    455699999999999999999999999988777767778899999999999999999


Q ss_pred             EEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHH
Q 002861          734 LLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVD  813 (873)
Q Consensus       734 lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~  813 (873)
                      +++||||+||.+++++++|.+.|+.+-+..++..+.+.+.++++.+.+++|.++.+|+++..+|++++-|.++|.++.+.
T Consensus       797 LLLVYTGKTRLAkNLLQdViRn~far~~a~~Q~ah~l~~~tdecAegf~kGsl~LlgecL~~YweqKk~MapgCEPl~Vr  876 (948)
T KOG4644|consen  797 LLLVYTGKTRLAKNLLQDVIRNFFARCKATKQKAHKLAEATDECAEGFEKGSLELLGECLEHYWEQKKFMAPGCEPLNVR  876 (948)
T ss_pred             EEEEEeCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccCCCCCCCcHH
Confidence            99999999999999999999999998888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCCce--EEecCCCccceeEEEeCCcchHHHHHHHHHhcCCC-ceEEEEEeeccC
Q 002861          814 RLFAFADPYCCG--YKLVGAGGGGFALLLAKDAESATELRRMLEKDSNF-NSEVYNWNIYLE  872 (873)
Q Consensus       814 ~l~~~a~~ga~G--~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~~~~-~v~v~~~~i~~~  872 (873)
                      +|++.+.....|  ....|||||||+|.+.+++.+.+.+...|.++.+| .-.++-..|+.+
T Consensus       877 ~lldmLaph~hgesgw~AGAGGGGFiYLl~kEpqqkeaiEa~Lak~eg~gN~s~Hlieid~e  938 (948)
T KOG4644|consen  877 ELLDMLAPHKHGESGWAAGAGGGGFIYLLIKEPQQKEAIEAFLAKNEGFGNMSCHLIEIDLE  938 (948)
T ss_pred             HHHHHhccccccccchhccCCCCcEEEEEecCCCCHHHHHHhhccCCCcCceeEEEEEecCC
Confidence            999999864444  34899999999999999999999999999988776 445666666544

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=100.00  E-value=7.7e-66  Score=582.03  Aligned_cols=336  Identities=36%  Similarity=0.506  Sum_probs=294.5

Q ss_pred             CCCC-eeeccCCCcCcCCCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCc
Q 002861            1 MTGD-VLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGR   79 (873)
Q Consensus         1 ~~gD-~i~~~d~~~~~~~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~   79 (873)
                      +||| ++.+++...+.++++|++|+|||+++++|++||||++|++++.+++++.+.|++||||||+++|++++|+.++++
T Consensus        59 ~s~D~vl~~~~~~~~~~~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~~~~av~~~~~  138 (414)
T PF07959_consen   59 CSGDMVLSVPDDPLIDWDEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMRASGAVLPDGN  138 (414)
T ss_pred             EecccccccCccccCCCCCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHHhCCcccCCCc
Confidence            4899 999999999999999999999999999999999999999987766666666799999999999999999999999


Q ss_pred             cceeeceeeecchHHHHHHhhhcCC-----chhhhhhhccccchhhhHHHHhhccc-ccccccccCC-C-c---------
Q 002861           80 ALLDTGIIAVRGKAWEELVMLSCSC-----PPMVSELLKSGKEMSLYEDLVAAWVP-AKHDWLMLRP-L-G---------  142 (873)
Q Consensus        80 ~l~~~Gi~~f~~~~~~~ll~~~~~~-----~d~g~d~~~~~~~~~~y~df~~~~~~-~~~~Y~~~~p-v-g---------  142 (873)
                      +++|+|+|+|++++++.|+++|.++     .+++. +.+.++++|+|+||++||++ ++.+|.++.+ + +         
T Consensus       139 ~~ldsG~~~~s~~~~e~L~~~~~~~~~~~~~y~~~-~g~~~~ei~lY~Dfl~aLg~~~t~e~~~~~~~~~~~~~~l~~aR  217 (414)
T PF07959_consen  139 VLLDSGIVFFSSKAVESLLYLHVSPPLDLCTYYGL-SGALPCEIDLYGDFLQALGPDATEEYPENTSNVLKEESELREAR  217 (414)
T ss_pred             ccccccceeccHHHHHHHHHhccCchHhhhhhhhh-cCCccceehHHHHHHHHhcCCccccCccccCCCcchhHHHHHHH
Confidence            9999999999999999999999643     44555 67779999999999999997 4555554422 2 2         


Q ss_pred             hhHHhhhhcCcceEEEecCceeEEecCcHHHHhhhccCCccc-cccceeeecCCCcccccccceeEEeeeecCCceeCCC
Q 002861          143 KELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGL-VGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGED  221 (873)
Q Consensus       143 d~~~~~l~~~~i~~~~~p~a~F~h~gt~~e~l~~l~~~~~~l-~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~  221 (873)
                      .++|..|+..|+..+++|+|+|||+||++|||+|++.+ +.+ ..+.+..+++...++.+..+++|+||+|+++|+|+++
T Consensus       218 ~~l~~~Lr~~~l~vv~l~~~~F~H~GTs~E~L~~lt~~-~~l~~~~~~~~~~~~~~~~~~~~~~~VinSil~~~~~vg~~  296 (414)
T PF07959_consen  218 QKLWKLLRGTPLNVVPLPNGKFYHFGTSREYLEHLTSD-SELGIMRRKFSHSPATTPSDSEASSCVINSILEGGVSVGPG  296 (414)
T ss_pred             HHHHHHhhhccccccccCCceEEEecCCHHHHHhhccC-cccccceeeeeccccccccccCCCeeEEEeEecCCceECCC
Confidence            46888899999999999999999999999999999998 443 2244456666655577888999999999999999999


Q ss_pred             cEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeeeeeeecCcceEEEEEeccCCCCCCCCCCC-Ccc
Q 002861          222 SLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKD-GTF  300 (873)
Q Consensus       222 s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~~v~l~~~~~~v~~~~G~~D~~k~~~~~~-~t~  300 (873)
                      |+||||+|+++|+||+||||+||++....  .+   ....||+++|++.|++.|+..||+++||++||||++++.+ +||
T Consensus       297 svIe~s~l~~~~~IG~~cIisGv~~~~~~--~~---~~~~lpd~~~~~~v~l~g~~~~v~~~~Gv~D~~K~~~~~~~~tf  371 (414)
T PF07959_consen  297 SVIEHSHLGGPWSIGSNCIISGVDINSWS--IL---PGLTLPDGVCLHSVRLGGSKRYVTRVFGVDDNLKGSVKDDSLTF  371 (414)
T ss_pred             CEEEeeecCCCCEECCCCEEECCcccccc--cc---cCcccCCceEEEEEEeCCCceEEEEEeccCcchhhccccccceE
Confidence            99999999999999999999999986531  11   1239999999999999999999999999999999998765 489


Q ss_pred             cCcchHHHHHHhCCCccccccCCCCCccccccccccccccchh
Q 002861          301 CGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSE  343 (873)
Q Consensus       301 ~g~~~~~~l~~~gi~~~dlw~~~~~~~~~Lw~A~LFPv~~~~~  343 (873)
                      ||+||.+||++|||+.+|+|++++.+++|||||||||||++.|
T Consensus       372 ~g~~~~~~l~~~gl~~~dlw~~~~~~~~~Lw~ArLFPV~~~~e  414 (414)
T PF07959_consen  372 LGRPWSEFLERTGLRPSDLWDSGDPSERSLWNARLFPVCSSSE  414 (414)
T ss_pred             CCCcHHHHHhHhCCCHHHccCCCCcchhhhhcCccccccCCCC
Confidence            9999999999999999999999777789999999999999865

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]

Probab=100.00  E-value=1.7e-48  Score=399.15  Aligned_cols=314  Identities=28%  Similarity=0.431  Sum_probs=273.2

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND  608 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~  608 (873)
                      ++.++|.||.|.||+||++|||..|||.|||+|||+|.+    +++.+..+..|++..+...  .+.++....     ++
T Consensus         2 ii~raPLRItfgGGGTDvepy~~k~GGaVlnatIdky~y----~~i~~~~d~~I~~~~~~~~--~v~~~~~~~-----h~   70 (333)
T COG2605           2 IISRAPLRITFGGGGTDVEPYCSKHGGAVLNATIDKYIY----VTIEKGFDDEIRVRYDRTE--FVKSYLENE-----HK   70 (333)
T ss_pred             cccccceEEEecCCCcCchHHHHhcCCEEEEeeeeeEEE----EEEccCCCceEEEecchHH--hhhhhHhhc-----Cc
Confidence            345799999999999999999999999999999999987    7888877777777633221  122222221     12


Q ss_pred             hhHHHHHHHHH--hhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-Hc
Q 002861          609 PFRLVKSALLV--TGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LM  685 (873)
Q Consensus       609 ~~~~~kaal~~--~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~-~~  685 (873)
                        .++++++..  +++     -..+.++|...+++|+|+||||||+++||++.|+..+-|..+++++|++.|..+|+ .+
T Consensus        71 --~~~~~~l~r~~l~~-----~g~~~~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~~LA~eAy~IER~~l  143 (333)
T COG2605          71 --PLVVESLKRDFLEF-----NGGTPIELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYEIEREDL  143 (333)
T ss_pred             --hHHHHHHHHHHHhh-----cCCCceEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Confidence              267777763  322     11223999999999999999999999999999999999999999999999999998 68


Q ss_pred             CCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHH
Q 002861          686 GTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLIS  765 (873)
Q Consensus       686 g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~  765 (873)
                      +..+|+|||++++|||++++.+.+..  ++.+.||++..++..+++.+++|+|||++|.+.+++.++++.....+++..+
T Consensus       144 ~~~gG~QDqYaaA~GGFnfMEf~~~~--~V~v~pL~i~~e~~~Ele~~~lL~yTGi~R~Ss~V~~dQ~~~~~~~~~~~~e  221 (333)
T COG2605         144 KIVGGKQDQYAAAFGGFNFMEFRGNG--EVVVNPLRINRERTAELEARLLLYYTGITRQSSEVIEDQVRNVVDGDEETLE  221 (333)
T ss_pred             ccccccccHHHHHhCCceEEEEcCCC--cEEEeecccchhHHHHHHhceEEEEeccccchhHHHHHHHHHhhcccHHHHH
Confidence            99999999999999999999987653  4678999999999999999999999999999999999998888888888889


Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCc
Q 002861          766 SIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDA  844 (873)
Q Consensus       766 ~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~  844 (873)
                      .+++|++.+.++.++|-.+|+.+||++|+..|+.+|.+...++++.+|+|++.|.+ |++|+|++|||+|||++.+|+ +
T Consensus       222 ~~~~mk~~A~~~~~al~~nd~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~~GA~~gKl~GaG~gGFllf~~~-p  300 (333)
T COG2605         222 ALHEMKALAYEMKDALVRNDIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALKNGAYGGKLSGAGGGGFLLFFCD-P  300 (333)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHhcCchhceeeccCCccEEEEEeC-c
Confidence            99999999999999999999999999999999999999999999999999999997 999999999999999999998 5


Q ss_pred             chHHHHHHHHHhcCCCceE
Q 002861          845 ESATELRRMLEKDSNFNSE  863 (873)
Q Consensus       845 ~~a~~i~~~L~~~~~~~v~  863 (873)
                      ....++.+.|++..++.+.
T Consensus       301 ~k~~~l~r~l~~~~~~~~~  319 (333)
T COG2605         301 SKRNELARALEKEQGFVVD  319 (333)
T ss_pred             cchHHHHHHHHHhcCCeEE
Confidence            8899999999987655443

>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.6e-43  Score=378.59  Aligned_cols=318  Identities=20%  Similarity=0.223  Sum_probs=247.4

Q ss_pred             eEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCc-e-eeecCCCCCCCCC
Q 002861          528 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQ-L-HIEDLTPIATPFD  605 (873)
Q Consensus       528 ~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~-~-~~~~l~~l~~p~~  605 (873)
                      ...++|||||||+||||||+      ||.|+++||+..++    +.++++++..+++.+.+... . ..+...++. +..
T Consensus        23 ~~~~~aPGRvNLIGEHtDYn------~G~VlP~Ain~~t~----v~v~~r~d~~v~l~s~n~~~~~~~~~~~~d~~-~~~   91 (390)
T COG0153          23 TVTAFAPGRVNLIGEHTDYN------GGFVLPCAINYGTY----VAVAKRDDGKVRLYSANFGNAGDIFFLLLDIA-KEK   91 (390)
T ss_pred             ceEecCCceEEeeccceecc------CceEEEEEeecceE----EEEEEccCceEEEEeCCCccccceeecchhhc-ccc
Confidence            47889999999999999998      99999999999987    78889988888888755442 1 233333443 233


Q ss_pred             CCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-H
Q 002861          606 HNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-L  684 (873)
Q Consensus       606 ~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~-~  684 (873)
                      .++|.+|+|+++..+..   ....-.|+++.+.++||.|+|||||||+.+|++.++.++++.++++.+|+++++++|+ +
T Consensus        92 ~~~W~nYvkgvi~~l~~---~g~~~~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k~~la~i~q~AEn~f  168 (390)
T COG0153          92 IDDWANYVKGVIKALQK---RGYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQF  168 (390)
T ss_pred             cchhhhhHHHHHHHHHh---cCCCcCCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc
Confidence            46899999998877642   2344569999999999999999999999999999999999999999999999999996 7


Q ss_pred             cCCCChhhhhHhhcccCe---eEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHH---------------
Q 002861          685 MGTGGGWQDQIGGLYPGI---KFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAH---------------  746 (873)
Q Consensus       685 ~g~~~G~~Dq~~~~~GG~---~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~---------------  746 (873)
                      +|++||+|||+++++|.-   .++++.   +  ++++++++|..     +..+++++|+++|.+.               
T Consensus       169 vGvn~G~mDQ~~s~~G~~~~al~ld~~---~--l~~~~~~~p~~-----~~~ivI~ns~vkr~la~seYn~Rr~ece~A~  238 (390)
T COG0153         169 VGVNCGIMDQLASAFGKKDHALLLDCR---T--LEYEPVPFPVG-----GVSIVIVNSNVKRELADSEYNERRAECEEAA  238 (390)
T ss_pred             cCCcCchHHHHHHHhCCCCcEEEEEcc---c--CceEEeccCcc-----ceEEEEecCCCccccchhHHHHHHHHHHHHH
Confidence            899999999999999954   455543   2  35677777652     4799999999977432               


Q ss_pred             HHHHHHHHHHhh--------c------CH-HHHHHHHHHH--HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCCh
Q 002861          747 QVLQKVVTRYLQ--------R------DN-LLISSIKRLT--ELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSN  809 (873)
Q Consensus       747 ~~l~~v~~~~~~--------~------~~-~~~~~~~~i~--~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~  809 (873)
                      +.++...+.+..        .      ++ ...+..+-+.  +.+.+..+||+++|+.+||++|+++|+++++.++ +++
T Consensus       239 ~~l~~~~~~L~d~~~~~~~~~~~~i~~~~~~~rRa~hvv~En~Rvl~a~~Al~~~dl~~fG~Lm~~SH~slrddye-vt~  317 (390)
T COG0153         239 EFLGVSIKSLRDVTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMNESHESLRDDYE-VTC  317 (390)
T ss_pred             HHHHHhhhhhhhcCHHHHHhhhhhcccchHHHHHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-ccc
Confidence            222220000000        0      01 1112222222  2367888999999999999999999999999995 999


Q ss_pred             HHHHHHHHHHcc--CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhc----CCCceEEEEEeecc
Q 002861          810 EFVDRLFAFADP--YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD----SNFNSEVYNWNIYL  871 (873)
Q Consensus       810 p~l~~l~~~a~~--ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~----~~~~v~v~~~~i~~  871 (873)
                      |++|.|++++..  |++|+||||||||||+++|+++ +.++.+++.+.+.    .++...+|.+.+..
T Consensus       318 pElD~lve~a~~~~G~~GaRmTGaGfGGc~IaLv~~-~~v~~~~e~v~~~y~~~~g~k~~~yv~~~~~  384 (390)
T COG0153         318 PELDTLVEIALAAGGAYGARMTGAGFGGCVIALVPN-DDVEAVAEAVAEEYEKVTGLKAAFYVVEASQ  384 (390)
T ss_pred             hhHHHHHHHHHHcCCcccceecCCCCCceEEEEech-hhHHHHHHHHHHhHHhhcCccccEEEEeccC
Confidence            999999999974  7799999999999999999986 6777777777643    45677888887654

>PRK05101 galactokinase; Provisional

Probab=100.00  E-value=1.5e-39  Score=366.42  Aligned_cols=315  Identities=17%  Similarity=0.178  Sum_probs=239.9

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCc-eeeecCCCCCCCCCCC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQ-LHIEDLTPIATPFDHN  607 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~-~~~~~l~~l~~p~~~~  607 (873)
                      +.++|||||+|+|||+||.      ||.||++||+++++    +.++++++..+++.+..... ....+++....+....
T Consensus        21 ~~~~APgRvnL~GeH~Dy~------gg~vL~~AId~~~~----v~i~~~~~~~i~v~s~~~~~~~~~~~~~~~~~~~~~~   90 (382)
T PRK05101         21 HTIQAPGRVNLIGEHTDYN------DGFVLPCAIDYQTV----ISCAKRDDRIVRVIAADYDNQQDEFSLDAPIVPHPEQ   90 (382)
T ss_pred             eEEECCceEEEeccceeec------CCEEEEEEecccEE----EEEEECCCCEEEEEECCCCCCceEEecCcccccCCCC
Confidence            7899999999999999984      99999999999987    77888888888887654321 1223333211122335


Q ss_pred             ChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HcC
Q 002861          608 DPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LMG  686 (873)
Q Consensus       608 ~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~-~~g  686 (873)
                      .|.+|+++++..+..   ......|+++++.++||.|+|||||||+++|++.|++++++.++++++|++++..+|+ +.|
T Consensus        91 ~w~~yv~~~~~~l~~---~~~~~~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G  167 (382)
T PRK05101         91 QWANYVRGVVKHLQE---RNPDFGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFVG  167 (382)
T ss_pred             chHHHHHHHHHHHHH---hCCCCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcC
Confidence            699999999987642   2233469999999999999999999999999999999999999999999999999998 579


Q ss_pred             CCChhhhhHhhcccCe---eEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcc-------hHHHH-----HH-
Q 002861          687 TGGGWQDQIGGLYPGI---KFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVR-------LAHQV-----LQ-  750 (873)
Q Consensus       687 ~~~G~~Dq~~~~~GG~---~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr-------~t~~~-----l~-  750 (873)
                      ++||.|||+++++||.   .++++.+   .  .+.++++++      +..++|++||.++       .|+..     .. 
T Consensus       168 ~~~G~~Dq~~s~~G~~~~~~~~d~~~---~--~~~~~~~~~------~~~~vv~~sg~~~~l~~~~y~~r~~e~~~A~~~  236 (382)
T PRK05101        168 CNCGIMDQLISALGKKDHALLIDCRS---L--ETKAVPMPE------GVAVVIINSNVKRGLVDSEYNTRRQQCETAARF  236 (382)
T ss_pred             CCCccHHHHHHHcCCCCeEEEEEcCC---C--ceEEeeCCC------CcEEEEEeCCCCccccccchhHHHHHHHHHHHH
Confidence            9999999999999984   3443322   2  345565553      4689999999888       45531     00 


Q ss_pred             -HHHHHHhh-------------cCHHHHHHHHHHH--HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHH
Q 002861          751 -KVVTRYLQ-------------RDNLLISSIKRLT--ELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDR  814 (873)
Q Consensus       751 -~v~~~~~~-------------~~~~~~~~~~~i~--~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~  814 (873)
                       .+ +....             .+....+..+.+.  +.+.++++||+++|++.||++|+++|.++++.+ ++++|++|.
T Consensus       237 l~~-~~l~~~~~~~~~~~~~~l~~~~~~r~~h~i~E~~rv~~a~~al~~~d~~~lG~Lm~~sh~~lr~~~-~vS~~eld~  314 (382)
T PRK05101        237 FGV-KALRDVTLEQFNAVAAELDPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAESHASMRDDF-EITVPQIDT  314 (382)
T ss_pred             hCh-HhhhcCCHHHHHHHHhhCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHhHHHHhhc-CCCCHhHHH
Confidence             00 01110             0111223444454  367889999999999999999999999998655 499999999


Q ss_pred             HHHHHcc--CC-ceEEecCCCccceeEEEeCCcchHHHHHHHHHh----cCCCceEEEEEeec
Q 002861          815 LFAFADP--YC-CGYKLVGAGGGGFALLLAKDAESATELRRMLEK----DSNFNSEVYNWNIY  870 (873)
Q Consensus       815 l~~~a~~--ga-~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~----~~~~~v~v~~~~i~  870 (873)
                      |++.+++  |+ +|+||||||+|||+++|++. +.++++.+.+++    ..+....+|.+++.
T Consensus       315 lv~~a~~~~Ga~gGakltGaG~GG~~ial~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~  376 (382)
T PRK05101        315 LVEIVKAVIGDQGGVRMTGGGFGGCIVALVPE-ELVEAVRQAVAEQYEAKTGLKETFYVCKAS  376 (382)
T ss_pred             HHHHHHhccCCcceEEeccCCCccEEEEEEcH-HHHHHHHHHHHHHHHHhhCCCCeEEEEecC
Confidence            9999986  76 58899999999999999996 667777777643    34456778887764

>PRK00555 galactokinase; Provisional

Probab=100.00  E-value=3.2e-39  Score=361.21  Aligned_cols=317  Identities=18%  Similarity=0.157  Sum_probs=238.7

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND  608 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~  608 (873)
                      ++++|||||+|+|||+||+      ||.|+++||+++++    +.++++++..+++.+.........+++.  .+.....
T Consensus         3 ~~~~APGRv~LiGEH~dy~------~g~vl~~Ai~~~~~----v~~~~~~~~~i~i~s~~~~~~~~~~~~~--~~~~~~~   70 (363)
T PRK00555          3 VRYAAPGRINLIGEHTDYN------LGFALPIALPQRTV----VTFTPEHTDAITASSDRADGSARIPLDT--TPGQVTG   70 (363)
T ss_pred             EEEEcCceEEeecccccCC------CCeEEeEEeeccEE----EEEEECCCCEEEEEECCCCCceEEecCC--CCCCCcc
Confidence            6789999999999999996      99999999999987    7888988888888765543222222222  1223356


Q ss_pred             hhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HcCC
Q 002861          609 PFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LMGT  687 (873)
Q Consensus       609 ~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~-~~g~  687 (873)
                      |.+|+++++..+..   ......|+++.|.|+||.|+|||||||+++|++.|++++++.++++++++++|+.+|+ +.|+
T Consensus        71 w~~y~~gv~~~l~~---~g~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~~~~~la~~a~~aE~~~~G~  147 (363)
T PRK00555         71 WAAYAAGVIWALRG---AGHPVPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENEYVGA  147 (363)
T ss_pred             hHHHHHHHHHHHHH---cCCCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCC
Confidence            99999998776532   2233469999999999999999999999999999999999999999999999999998 6799


Q ss_pred             CChhhhhHhhcccCe---eEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHH--------HHHHHHHHHH
Q 002861          688 GGGWQDQIGGLYPGI---KFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAH--------QVLQKVVTRY  756 (873)
Q Consensus       688 ~~G~~Dq~~~~~GG~---~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~--------~~l~~v~~~~  756 (873)
                      +||.|||+++++||.   .++++.+   .  .+.+++++++.   ....|++++|+.++.+.        .....+.+.+
T Consensus       148 ~~G~~Dq~as~~G~~~~~~~~d~~~---~--~~~~v~~~~~~---~~~~lvv~~s~~~~~~~~~~y~~rr~~~~~~~~~~  219 (363)
T PRK00555        148 PTGLLDQLAALFGAPKTALLIDFRD---L--TVRPVAFDPDA---AGVVLLLMDSRARHRHAGGEYAARRASCERAAADL  219 (363)
T ss_pred             CCChhHHHHHHhCCCCeEEEEEcCC---C--cEEEeccCCCc---CceEEEEEcCCCcccccchhhHHHHHHHHHHHHHh
Confidence            999999999999986   5555533   2  34566654321   23579999999887632        2222221111


Q ss_pred             h-----hcC-------------HHHHHHHHHH--HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHH
Q 002861          757 L-----QRD-------------NLLISSIKRL--TELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLF  816 (873)
Q Consensus       757 ~-----~~~-------------~~~~~~~~~i--~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~  816 (873)
                      .     ...             ....+..+.+  ...+.++..+|.++|++.||++|+++|+.++..+ ++++|+++.|+
T Consensus       220 ~~~~lr~~~~~~~~~~~~~~~~~~~~r~~h~~~e~~~v~~~~~al~~gd~~~lg~lm~~~h~~lr~~~-~vS~~~ld~l~  298 (363)
T PRK00555        220 GVSSLRAVQDRGLAALGAIADPIDARRARHVLTENQRVLDFAAALADSDFTAAGQLLTASHASMRDDF-EITTERIDLIA  298 (363)
T ss_pred             CccchhcCCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHHHhhc-CCCChhHHHHH
Confidence            0     000             1111222222  2357788999999999999999999999988444 49999999999


Q ss_pred             HHHcc-CCceEEecCCCccceeEEEeCCcchHHHHHHHHHh----cCCCceEEEEEeec
Q 002861          817 AFADP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEK----DSNFNSEVYNWNIY  870 (873)
Q Consensus       817 ~~a~~-ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~----~~~~~v~v~~~~i~  870 (873)
                      +.+++ |++|+|+||||+|||++++++. +.++++.+.+++    .++..+.+|.+++.
T Consensus       299 ~~a~~~Ga~GaklsGaG~Gg~vial~~~-~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~  356 (363)
T PRK00555        299 DSAVRAGALGARMTGGGFGGCVIALVPA-DRAEDVADTVRRAAVTAGYPEPAVSRTYAA  356 (363)
T ss_pred             HHHHhcCCeEEEECCCCccCeEEEEEch-hHHHHHHHHHHHHHHHccCCCCcEEEEecC
Confidence            99887 9999999999999999999986 456666655544    44567888888764

>PRK05322 galactokinase; Provisional

Probab=100.00  E-value=6e-39  Score=361.95  Aligned_cols=320  Identities=18%  Similarity=0.187  Sum_probs=237.6

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCc--eeeecCCCCCCCCCC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQ--LHIEDLTPIATPFDH  606 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~--~~~~~l~~l~~p~~~  606 (873)
                      ..++|||||+|+|||+||.      ||.||++||+++++    +.++++++..+++.+.....  ....+++++.. ...
T Consensus        20 ~~~~APgRv~L~GEH~d~~------g~~vl~~AI~~~~~----v~~~~~~~~~i~i~s~~~~~~~~~~~~~~~~~~-~~~   88 (387)
T PRK05322         20 DVFFSPGRINLIGEHTDYN------GGHVFPAAITLGTY----GAARKRDDKKVRLYSANFEDLGIIEFDLDDLSF-DKE   88 (387)
T ss_pred             eEEEcCceeEecccceeec------CceeeeeeccceEE----EEEEECCCCEEEEEECCCCCCceEEEeccccCC-CCc
Confidence            6779999999999999995      99999999999987    77888888888887654431  12223333322 233


Q ss_pred             CChhHHHHHHHHHhhhhhhccc-cccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-H
Q 002861          607 NDPFRLVKSALLVTGVIHEKLI-ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-L  684 (873)
Q Consensus       607 ~~~~~~~kaal~~~~~~~~~~~-~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~-~  684 (873)
                      .+|.+|+++++..+..   ... ...||+++|.|+||.|+|||||||+++|++.|++++++.++++++|+++|+.+|+ +
T Consensus        89 ~~w~~y~~gvi~~l~~---~~~~~~~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~  165 (387)
T PRK05322         89 DDWANYPKGVLKFLQE---AGYKIDHGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTENEF  165 (387)
T ss_pred             cchHHHHHHHHHHHHH---cCCCCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcc
Confidence            5699999998887642   122 2369999999999999999999999999999999999999999999999999998 5


Q ss_pred             cCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHH------------HHHHHH
Q 002861          685 MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAH------------QVLQKV  752 (873)
Q Consensus       685 ~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~------------~~l~~v  752 (873)
                      .|++||+|||+++++||.......+..+++....|+++.       +..|+|++||.++.+.            +++..+
T Consensus       166 ~G~~sG~mDq~as~~G~~~~~~~~d~~~~~~~~~~~~~~-------~~~lvv~dsg~~~~~~~~~yn~r~~e~~~a~~~l  238 (387)
T PRK05322        166 IGVNSGIMDQFAIGMGKKDHAILLDCNTLEYEYVPLDLG-------DYVIVIMNTNKRRELADSKYNERRAECEKALEEL  238 (387)
T ss_pred             CCCCcchHHHHHHHhccCCeEEEEecCCCceEEeccCCC-------CeEEEEEECCCccccCcchhhHHHHHHHHHHHHH
Confidence            799999999999999984422222222233333344321       3579999999988643            333333


Q ss_pred             HHHH-----hhcCHHH-HH---------HHHHH------HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHH
Q 002861          753 VTRY-----LQRDNLL-IS---------SIKRL------TELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEF  811 (873)
Q Consensus       753 ~~~~-----~~~~~~~-~~---------~~~~i------~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~  811 (873)
                      .+.+     ...+++. ..         ..+++      ...+..+..||+++|++.||++|+++|..+++.+ ++++|+
T Consensus       239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~r~~~~~~al~~~d~~~lg~lm~~sh~~L~~~y-~~s~~e  317 (387)
T PRK05322        239 QKKLDIKSLGELTEEEFDEYSYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVSLRDDY-EVTGLE  317 (387)
T ss_pred             hhhcCccchhcCCHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhHHHHhhh-cCCCHh
Confidence            2111     0001111 00         01121      1346788999999999999999999999887655 388899


Q ss_pred             HHHHHHHHc-c-CCceEEecCCCccceeEEEeCCcchHHHHHHHH----HhcCCCceEEEEEeecc
Q 002861          812 VDRLFAFAD-P-YCCGYKLVGAGGGGFALLLAKDAESATELRRML----EKDSNFNSEVYNWNIYL  871 (873)
Q Consensus       812 l~~l~~~a~-~-ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L----~~~~~~~v~v~~~~i~~  871 (873)
                      ++.|++.++ . |++|+|+||||+|||+++|++. +..+++.+.+    .+.++..+.+|.+++..
T Consensus       318 ld~lv~~a~~~~Ga~garlsGaG~GG~vial~~~-~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~  382 (387)
T PRK05322        318 LDTLVEAAWKQEGVLGARMTGAGFGGCAIAIVKK-DKVEAFKENVGKAYEEKIGYAASFYVAEIGD  382 (387)
T ss_pred             HHHHHHHHHhcCCccEEEEecCCCceEEEEEEcH-HHHHHHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence            999999995 4 9999999999999999999986 4566555554    44456778888887653

>PLN02865 galactokinase

Probab=100.00  E-value=1.5e-38  Score=357.77  Aligned_cols=323  Identities=19%  Similarity=0.133  Sum_probs=240.1

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCC------
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIAT------  602 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~------  602 (873)
                      +.++|||||||+|||+||+      ||.|+++||+++++    +.++++++..+++.+........+++++...      
T Consensus        31 ~~~~APGRVnlIGEHtDYn------gG~VLp~AI~~~~~----va~~~~~~~~i~v~s~~~~~~~~~~~~~~~~~~~~~~  100 (423)
T PLN02865         31 RVVVSPYRICPLGAHIDHQ------GGTVSAMTINKGIL----LGFVPSGDPEVLLRSAQFEGEVRFRVDEIQHPIANVS  100 (423)
T ss_pred             eEEEcCcceecccccccCC------CCeEEeEEeeccEE----EEEEECCCCEEEEEECCCCCceEEecccccccccccc
Confidence            6789999999999999997      99999999999987    7788888888888775543222233332211      


Q ss_pred             --CCCCCChhHHHHHHHHHhhhhhhccc-cccCEEEEEeecc-CCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 002861          603 --PFDHNDPFRLVKSALLVTGVIHEKLI-ESMGLQIRTWANV-PRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLV  678 (873)
Q Consensus       603 --p~~~~~~~~~~kaal~~~~~~~~~~~-~~~G~~i~i~s~I-P~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la  678 (873)
                        +.....|.+|+++++..+..   ... ...||++.|.+++ |.|+|||||||+.+|++.|++.+++..++++++++++
T Consensus       101 ~~~~~~~~W~~Yv~gv~~~l~~---~g~~~~~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~~~~~~~~~la~~a  177 (423)
T PLN02865        101 SDSKEESNWGDYARGAVYALQS---RGHALSQGITGYISGSEGLDSSGLSSSAAVGVAYLLALENANNLTVSPEDNIELD  177 (423)
T ss_pred             ccCCCCCCHHHHHHHHHHHHHH---cCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence              12235699999999887631   223 2369999999999 6899999999999999999999999999999999999


Q ss_pred             HHHHH-HcCCCChhhhhHhhccc---CeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHH--------
Q 002861          679 LLLEQ-LMGTGGGWQDQIGGLYP---GIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAH--------  746 (873)
Q Consensus       679 ~~~E~-~~g~~~G~~Dq~~~~~G---G~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~--------  746 (873)
                      +.+|+ ++|++||+|||+++++|   ++.++++.+.   .++..|+++++... ..++.+++++|+.+|...        
T Consensus       178 ~~~E~~~~G~~~G~mDQ~as~~~~~g~~~~iDf~~l---~~~~vpl~~~~~~~-~~~~~ivv~~s~~~h~l~~~~~Yn~R  253 (423)
T PLN02865        178 RLIENEYLGLRNGILDQSAILLSRYGCLTFMDCKTL---DHKLVSLQFQQPGG-EKPFKILLAFSGLRHALTNKPGYNLR  253 (423)
T ss_pred             HHHHHHhcCCCCccccHHHHHhcccCceEEEEccCC---CcceeecCcccccC-CCCeEEEEEeCCCchhhcccchhhHH
Confidence            99997 68999999999996665   7888887653   33344555332100 025689999999887521        


Q ss_pred             --------HHHHHH------HHHHhhcC-------------HHHHHHHHHHHH--HHHHHHHHHhccCHHHHHHHHHHHH
Q 002861          747 --------QVLQKV------VTRYLQRD-------------NLLISSIKRLTE--LAKNGRDALMNCDVDELGKIMLEAW  797 (873)
Q Consensus       747 --------~~l~~v------~~~~~~~~-------------~~~~~~~~~i~~--~~~~~~~AL~~gd~~~lg~lm~~~~  797 (873)
                              .++.+.      ...+..-+             ....+..+.+.+  .+.++.++|+++|++.||++|+++|
T Consensus       254 r~Ec~~aa~~l~~~~~~~~~~~~Lr~~~~~~~~~~~~~l~~~l~~Ra~Hv~~E~~Rv~~~~~al~~~d~~~~g~lm~~sh  333 (423)
T PLN02865        254 VSECQEAARFLLEASGNDELEPLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLISASG  333 (423)
T ss_pred             HHHHHHHHHHHHHhcCCccchhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Confidence                    112100      00000000             111233333333  3678889999999999999999999


Q ss_pred             HHHhhhCCCCChHHHHHHHHHHcc--CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhc-----------CCCceEE
Q 002861          798 RLHQELDPHCSNEFVDRLFAFADP--YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD-----------SNFNSEV  864 (873)
Q Consensus       798 ~~~~~l~~~vs~p~l~~l~~~a~~--ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~-----------~~~~v~v  864 (873)
                      .++++.++ +++|++|.|++.+++  |++|+||+|+|+|||+++|+++ +.++++.+.+.+.           .+....+
T Consensus       334 ~Slrd~ye-vS~~eld~lv~~a~~~~Ga~GaR~tGgGfGGc~vaLv~~-~~~~~~~~~v~~~Y~~~~p~~~~~~~~~~~~  411 (423)
T PLN02865        334 LSSIENYE-CGCEPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVDA-EMAEEAASFVRDEYEKAQPELASNINGDKPV  411 (423)
T ss_pred             hhHHhhcc-CCcHHHHHHHHHHHhcCCCeEEEEeccCCccEEEEEEch-hHHHHHHHHHHHHHHhhccccccccCCCCcE
Confidence            99999985 999999999999875  8999999999999999999996 6677777666542           1245567


Q ss_pred             EEEeec
Q 002861          865 YNWNIY  870 (873)
Q Consensus       865 ~~~~i~  870 (873)
                      |.+++.
T Consensus       412 ~~~~p~  417 (423)
T PLN02865        412 LICEAG  417 (423)
T ss_pred             EEEecC
Confidence            777654

>PTZ00290 galactokinase; Provisional

Probab=100.00  E-value=3.3e-38  Score=358.03  Aligned_cols=320  Identities=13%  Similarity=0.116  Sum_probs=223.5

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEe---cCCcEEEEeCCCCceeeecCCCCCCCCC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETT---KMSGVLISDDAGNQLHIEDLTPIATPFD  605 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~---~~~~i~i~~~~~~~~~~~~l~~l~~p~~  605 (873)
                      +.++|||||||+||||||+      ||.|+++||+++++    +.+.++   ++..+++.+....   .++++....+..
T Consensus        38 ~~~~APGRVnLIGEHtDYn------gG~VLp~AId~~~~----va~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~  104 (468)
T PTZ00290         38 LFTFAPGRVNFIGEHVDYM------GGYVCPAAVLEGCH----ILVGRVKHFCDHKLRFATETDE---HFVLDHLGGAKH  104 (468)
T ss_pred             EEEeccceeeecccccccC------CCeeeeccccCcEE----EEEeecCCCCCCeEEEEECCCc---eeecCcccccCC
Confidence            8899999999999999996      99999999999987    555544   4566777554321   122222221222


Q ss_pred             CCChhHHHHHHHHH-hhhhhhccc-----cccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCC------------
Q 002861          606 HNDPFRLVKSALLV-TGVIHEKLI-----ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDG------------  667 (873)
Q Consensus       606 ~~~~~~~~kaal~~-~~~~~~~~~-----~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~------------  667 (873)
                      ..+|.+|+++++.. +.   ....     ...||++.|.++||.|+|||||||+.+|++.|++.+++.            
T Consensus       105 ~~~W~nYv~gv~~~~l~---~~g~~~~~~~~~G~d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~~~~  181 (468)
T PTZ00290        105 NKAWTTFVRGAATLRLN---RLGVAIDAPSLQGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPTSPGRR  181 (468)
T ss_pred             cccHHHHHHHHHHHHHH---HhCCCcccCCCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccccccccc
Confidence            35799999999754 22   1112     236999999999999999999999999999999998732            


Q ss_pred             --------CCCHHHHHHHHHHHHH-HcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEE
Q 002861          668 --------DQSNENVARLVLLLEQ-LMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVF  738 (873)
Q Consensus       668 --------~ls~~eL~~la~~~E~-~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~  738 (873)
                              +.+..+|+.+++++|+ ++|++||+|||+++++|+.......+..++  +++++++++-  ...+..|+|++
T Consensus       182 ~~~~~~~~~~~~~~lA~~aqraEn~~vGv~cGiMDQ~asa~g~~~~al~iD~~~l--~~~~v~l~~~--~~~~~~~vV~n  257 (468)
T PTZ00290        182 YSILPPMSKEELIELAKQARRIETEFCGVNVGIMDQFISAFAEEDKFMFLDCKSL--TFESHDMTPL--LGDGACFLLID  257 (468)
T ss_pred             cccccccCcccHHHHHHHHHHHHHhhcCCCcchhhHHHHHhCCCCcEEEEecCCC--eEEEeccCCC--CCCCcEEEEEe
Confidence                    1234789999999998 689999999999999985543333333223  4566655420  00256899999


Q ss_pred             eCCcchHH----HHH-------HHHHHHHhh-------------------------------------cCHHHHHHHHHH
Q 002861          739 TGQVRLAH----QVL-------QKVVTRYLQ-------------------------------------RDNLLISSIKRL  770 (873)
Q Consensus       739 tg~tr~t~----~~l-------~~v~~~~~~-------------------------------------~~~~~~~~~~~i  770 (873)
                      |+.+|+..    ..+       +...+.+..                                     .+....+..+.+
T Consensus       258 S~v~h~l~~s~~~~Yn~Rr~ece~a~~~L~~~~l~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ra~HVi  337 (468)
T PTZ00290        258 SMIKHDLLGGTAGMYNTVRSDQEGAQKKIGKHRYRGKPFTFSDLVRNPKKYTFDGDVVAFMESCKPLMTPGEFERGTYNI  337 (468)
T ss_pred             CCCcchhccccchhhHHHHHHHHHHHHHhccccccchhhhHHHhhhccccccccccHHHHHHHhhhcCCHHHHHHHHHHh
Confidence            99988621    011       100010000                                     001111223333


Q ss_pred             HH--HHHHHHHHHh-------ccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHH-cc-CCceEEecCCCccceeEE
Q 002861          771 TE--LAKNGRDALM-------NCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFA-DP-YCCGYKLVGAGGGGFALL  839 (873)
Q Consensus       771 ~~--~~~~~~~AL~-------~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a-~~-ga~G~klsGAGgGG~v~~  839 (873)
                      .+  .+.+++.+|+       .+|+..||++|+++|.++++.+ ++++|++|.|++.+ .. |++|+||||||||||+++
T Consensus       338 tEn~RV~~a~~al~~~~~l~~~~~~~~lG~lm~~sh~sL~~~~-~vS~~elD~lv~~~~~~~G~~GaRlTGaG~GGc~i~  416 (468)
T PTZ00290        338 MEQIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLM-KITTPELDFIHELINEEKGVAGGRMMGGGFGGCIIL  416 (468)
T ss_pred             hHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHhCCCcEEEEecCCCceEEEE
Confidence            33  2556666664       4569999999999999988877 49999999999975 44 899999999999999999


Q ss_pred             EeCCcchHHHHHHHHH----hcCCCceEEEEEeec
Q 002861          840 LAKDAESATELRRMLE----KDSNFNSEVYNWNIY  870 (873)
Q Consensus       840 l~~~~~~a~~i~~~L~----~~~~~~v~v~~~~i~  870 (873)
                      |++. +..+++.+.++    +.++....+|.+.+.
T Consensus       417 Lv~~-~~~~~~~~~v~~~y~~~~g~~~~~~~~~~~  450 (468)
T PTZ00290        417 LLKK-NAVDRVVAHVREKFKARFGVENDVYPVVAG  450 (468)
T ss_pred             Eech-hhHHHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence            9986 55555555554    444556788888764

>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch

Probab=100.00  E-value=6.9e-38  Score=350.10  Aligned_cols=312  Identities=21%  Similarity=0.194  Sum_probs=246.1

Q ss_pred             EEEeceEEEeecccccCCCcccCCCC-eEEEeeeecccccceeEEEEEecCCcEEEEeCCCCc-eeeecCCC--C-CCCC
Q 002861          530 KVELPVRIDFAGGWSDTPPWSLERAG-CVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQ-LHIEDLTP--I-ATPF  604 (873)
Q Consensus       530 ~v~aP~Rv~L~G~~tD~~~~~~~~gG-~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~-~~~~~l~~--l-~~p~  604 (873)
                      .++|||||+|+|||+|+.      +| .+|.+||+.+.+    ++++++++..+.+.++.... ......+.  + ....
T Consensus         2 ~~~APGKl~L~GEhavv~------~G~pAl~~aI~~~~~----v~i~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~   71 (358)
T TIGR01220         2 VVHAPGKLFVAGEYAVVE------PGNPAILVAVDRFVT----VTVEDADGAADVIISSDLGPQPVGWRRHDGRLVVRDP   71 (358)
T ss_pred             eeecceeEEEeeeEEEec------CCCeEEEEEEcCcEE----EEEEeCCCCceEEEecCCCCCceEEEecCCceeeccc
Confidence            578999999999999993      45 599999999877    78888877767776544321 11111111  1 0111


Q ss_pred             CCCChhHHHHHHHHHhhh-hhhccccccCEEEEEeeccCCC----CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 002861          605 DHNDPFRLVKSALLVTGV-IHEKLIESMGLQIRTWANVPRG----SGLGTSSILAAAVVKALLQITDGDQSNENVARLVL  679 (873)
Q Consensus       605 ~~~~~~~~~kaal~~~~~-~~~~~~~~~G~~i~i~s~IP~G----sGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~  679 (873)
                      ...+|++|+++++..+.. ........+||++.+.|++|.+    +|||||||++||++.|++++++.++++++++++|.
T Consensus        72 ~~~~~~~~v~~~i~~~~~~~~~~~~~~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~l~~~~l~~lA~  151 (358)
T TIGR01220        72 DARSALAYVVSAIETVERYAGERNQKLPALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLELSNDEIFKLAM  151 (358)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcCCCCCceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            234689999998876421 1111223468999999999984    69999999999999999999999999999999999


Q ss_pred             HHHHHcCCCChhhhhHhhcccCeeEEecCCCCc------------------ceeEEEeecCChhhhhhcCcEEEEEEeCC
Q 002861          680 LLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIP------------------LRLQVIPLLASPQLILELQQRLLVVFTGQ  741 (873)
Q Consensus       680 ~~E~~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~------------------~~~~v~pl~~~~~~~~~~~~~lllv~tg~  741 (873)
                      .+|...+.+++.+|+++++|||+.+++.++...                  ....++++++++      +.+++|+|||.
T Consensus       152 ~~E~~~~g~~sg~D~~a~~~GG~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~------~~~l~v~~tg~  225 (358)
T TIGR01220       152 LATAELQPKGSCGDIAASTYGGWIAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAPK------GLTLLIGWTGS  225 (358)
T ss_pred             HHHhhhCCCCCcchhhhhhhCCEEEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCCC------CCEEEEEeCCC
Confidence            999866543444699999999998775332110                  012356776654      46899999999


Q ss_pred             cchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCC----CCChHHHHHHHH
Q 002861          742 VRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDP----HCSNEFVDRLFA  817 (873)
Q Consensus       742 tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~----~vs~p~l~~l~~  817 (873)
                      +++|++++++|.+.+...++.+...++++.+++.++.++|+++|++.|+++|+++|..++.+..    ++++|++++|++
T Consensus       226 ~~~T~~~v~~V~~~~~~~~~~~~~~l~~~~~i~~~~~~al~~~d~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~  305 (358)
T TIGR01220       226 PASTASLVSDVHRRKWRGSASYQRFLETSTDCVESAITAFETGDITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCD  305 (358)
T ss_pred             CcCcHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHH
Confidence            9999999998876655544545567888999999999999999999999999999999999854    689999999999


Q ss_pred             HHcc-CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhcC
Q 002861          818 FADP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDS  858 (873)
Q Consensus       818 ~a~~-ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~~  858 (873)
                      .+++ |+ |+|+||||+|||+++|+++++.++++.++|++++
T Consensus       306 ~a~~~ga-~aKlsGAGgGg~~ial~~~~~~~~~~~~~~~~~G  346 (358)
T TIGR01220       306 AAEAYGG-AAKPSGAGGGDCGIAILDAEADITHVRQRWETAG  346 (358)
T ss_pred             HHhhcCc-eecCCCCCCcCEEEEEeCCchhHHHHHHHHHHCC
Confidence            9998 66 9999999999999999998788999999999984

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.

>TIGR00131 gal_kin galactokinase

Probab=100.00  E-value=7.6e-38  Score=354.40  Aligned_cols=318  Identities=19%  Similarity=0.218  Sum_probs=236.3

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCc-eeeecCCCCCCCCCCC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQ-LHIEDLTPIATPFDHN  607 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~-~~~~~l~~l~~p~~~~  607 (873)
                      ++++|||||+|+|||+||.      ||.||++||+++++    +.++++++..+++.+..... ....+++....+....
T Consensus        18 ~~~~APgrv~L~GeH~dy~------g~~vl~~AI~~~~~----v~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~   87 (386)
T TIGR00131        18 FTARAPGRVNLIGEHTDYN------DGSVLPCAIDFGTL----CAVAVRDDKNVRIYLANADNKFAERSLDLPLDGSEVS   87 (386)
T ss_pred             EEEECCcceEeeccceeeC------CceEEeeEeeccEE----EEEEECCCCeEEEEECCCCCcceEEECCCCCCCCCCC
Confidence            8889999999999999985      99999999999887    77888888888876644321 1112222111122225


Q ss_pred             ChhHHHHHHHHHhhhhhhccc-cccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-Hc
Q 002861          608 DPFRLVKSALLVTGVIHEKLI-ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LM  685 (873)
Q Consensus       608 ~~~~~~kaal~~~~~~~~~~~-~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~-~~  685 (873)
                      +|.+|+++++..+..   .+. ...|+++.|.++||.|+|||||||+++|++.|++.+++.+++++++++++..+|+ ..
T Consensus        88 ~w~~y~~~~~~~~~~---~~~~~~~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~~~~~l~~~a~~~E~~~~  164 (386)
T TIGR00131        88 DWANYFKGVLHVAQE---RFNSFPLGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFV  164 (386)
T ss_pred             CcHhHHHHHHHHHHH---hcCCCCCceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCcc
Confidence            688999999876532   222 2459999999999999999999999999999999999999999999999999998 47


Q ss_pred             CCCChhhhhHhhcccCe---eEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHH-HH-------HHHH
Q 002861          686 GTGGGWQDQIGGLYPGI---KFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQV-LQ-------KVVT  754 (873)
Q Consensus       686 g~~~G~~Dq~~~~~GG~---~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~-l~-------~v~~  754 (873)
                      |+++|.|||+++++||.   .++++.+     +.+.++++++     ++..|+|++||.++.|... +.       ...+
T Consensus       165 G~~~g~~Dq~~s~~G~~~~~l~~~~~~-----~~~~~~~~~~-----~~~~lvv~~s~~~~~t~~~~y~~r~~e~~~a~~  234 (386)
T TIGR00131       165 GVNCGIMDQAASVLGKEDHALLVECRS-----LKATPFKFPQ-----LGIAFVIANTNVKRTLAPSNYNTRRQECTTAAN  234 (386)
T ss_pred             CCCcchHHHHHHHhccCCcEEEEEcCC-----CceeeecCCC-----CCeEEEEEeCCCccccccchhHHHHHHHHHHHH
Confidence            99999999999999994   3444332     2345666553     2468999999998875421 00       0000


Q ss_pred             --------HHhhcCHHH-H---HHHHHHHH--------------HHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCC
Q 002861          755 --------RYLQRDNLL-I---SSIKRLTE--------------LAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCS  808 (873)
Q Consensus       755 --------~~~~~~~~~-~---~~~~~i~~--------------~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs  808 (873)
                              ......+.. .   +.+..+.+              .+.++.++|.++|++.||++|+++|.++++++ +++
T Consensus       235 ~l~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~rv~~~~~al~~~d~~~lG~lm~~sh~~l~~~~-~vs  313 (386)
T TIGR00131       235 FLAATDKGALRDFMNEYFARYIARLTKMLPLVEERAKHVVSENLRVLKAVKAMKDNDFKQFGALMNESHASCDDDY-ECT  313 (386)
T ss_pred             HhccccccchhhCCHHHHhhhHhhHhhcCHHHHhhHheeehHHHHHHHHHHHHHhCcHHHHHHHHHHhhHHHHHhc-CCC
Confidence                    001111111 1   11111111              24578999999999999999999999999876 699


Q ss_pred             hHHHHHHHHHH-cc-CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhc----CCCceEEEEEeecc
Q 002861          809 NEFVDRLFAFA-DP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD----SNFNSEVYNWNIYL  871 (873)
Q Consensus       809 ~p~l~~l~~~a-~~-ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~----~~~~v~v~~~~i~~  871 (873)
                      +|+++.+++.+ +. |++|+||||||+|||+++|+++ +.++++.+.+++.    .+....+|.+++..
T Consensus       314 ~peld~lv~~a~~~~GAlGakltGaG~GG~vial~~~-~~~~~v~~~~~~~y~~~~~~~~~~~~~~~~~  381 (386)
T TIGR00131       314 CPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPN-ENVDKVRQAVADKYPKKTGLELTFYVIVSKP  381 (386)
T ss_pred             CHHHHHHHHHHHhcCCCcEEEEecCCCceEEEEEEcH-HHHHHHHHHHHHHHHHhhCCCCcEEEEEECC
Confidence            99999999875 44 9999999999999999999996 5677788877543    34577888877653

The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.

>PLN02677 mevalonate kinase

Probab=100.00  E-value=1.2e-36  Score=339.59  Aligned_cols=314  Identities=19%  Similarity=0.196  Sum_probs=236.3

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEe----cCCcEEEEeCCCCceeeecCCCCCCC-
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETT----KMSGVLISDDAGNQLHIEDLTPIATP-  603 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~----~~~~i~i~~~~~~~~~~~~l~~l~~p-  603 (873)
                      +.++|||||+|+|||+|+.      |+.++++||+++++    +.++++    +...|.+...+.......+.+++... 
T Consensus         3 i~v~apgk~~l~Geh~~~~------g~~a~~~ai~~~~~----~~~~~~~~~~~~~~i~~~~~di~~~~~~~~~~l~~~~   72 (387)
T PLN02677          3 VKARAPGKIILAGEHAVVH------GSTAVAAAIDLYTY----VSLRFPPSAENDDTLKLQLKDLGLEFSWPLARIKEAL   72 (387)
T ss_pred             eEEeCCccEEEeeeeeeec------CCeeeeeEeeceEE----EEEEecCCCCCCCeEEEEcCCCCceEEechHhhhhhh
Confidence            7899999999999999995      99999999999988    667653    23344443222211111111111000 


Q ss_pred             -----CCCCChhHHHHHHHHHhh-hhhhc----------------------cccccCEEEEEeeccCCCCCCChHHHHHH
Q 002861          604 -----FDHNDPFRLVKSALLVTG-VIHEK----------------------LIESMGLQIRTWANVPRGSGLGTSSILAA  655 (873)
Q Consensus       604 -----~~~~~~~~~~kaal~~~~-~~~~~----------------------~~~~~G~~i~i~s~IP~GsGLGSSSAlav  655 (873)
                           .....++.+...++..+. .+.+.                      .....+++++|.|+||.|+|||||||++|
T Consensus        73 ~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~flyl~~~~~~~~~~~i~I~S~lP~GaGLGSSAAv~V  152 (387)
T PLN02677         73 PDLGTPCPSTPTSCSEETLKSIAALVEEQNIPEAKIWLSSGVSAFLWLYTSILGFNPATVVVTSELPLGSGLGSSAAFCV  152 (387)
T ss_pred             ccccccccccccccCHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHhccCCCeEEEEEccCCCCCCccHHHHHHH
Confidence                 011122233333333221 11100                      01135799999999999999999999999


Q ss_pred             HHHHHHHHHhCC-CC-------------CHHHHHHHHHHHHHH-cCCCChhhhhHhhcccCeeEEecCCCCcceeEEEee
Q 002861          656 AVVKALLQITDG-DQ-------------SNENVARLVLLLEQL-MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPL  720 (873)
Q Consensus       656 A~l~Al~~~~g~-~l-------------s~~eL~~la~~~E~~-~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl  720 (873)
                      |++.|++.+++. +.             +.++++++|..+|.. .|.++|+ |++++.+||+..++..+       ++++
T Consensus       153 a~~~AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGi-D~a~s~~Gg~I~f~~~~-------~~~l  224 (387)
T PLN02677        153 ALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGI-DNTVSTYGNMIKFKSGE-------LTRL  224 (387)
T ss_pred             HHHHHHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCch-hHHHHhcCCeEEEcCCC-------ceec
Confidence            999999999983 22             235788999999995 4889998 99999999988776432       3455


Q ss_pred             cCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhc---------cCHHHHHH
Q 002861          721 LASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMN---------CDVDELGK  791 (873)
Q Consensus       721 ~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~---------gd~~~lg~  791 (873)
                      +.+.      +.+++|++||.+|+|+++++.|.+.+.+++..+...++.+.+++.++.++|++         +|++.|++
T Consensus       225 ~~~~------~l~llv~dTgv~~sT~~lV~~V~~~~~~~p~~~~~il~~~~~i~~~a~~al~~~~~~~~~~~~~~~~Lg~  298 (387)
T PLN02677        225 QSNM------PLKMLITNTRVGRNTKALVAGVSERALRHPDAMKSVFNAVDSISEELATIIQSPAEDELSITEKEEKLKE  298 (387)
T ss_pred             CCCC------CceEEEEECCCCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHH
Confidence            5432      46899999999999999999997777666666667788999999999999998         56999999


Q ss_pred             HHHHHHHHHhhhCCCCChHHHHHHHHHHccCCceEEecCCCccceeEEEeCC---cchHHHHHHHHHhcCCCceEEEEEe
Q 002861          792 IMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKD---AESATELRRMLEKDSNFNSEVYNWN  868 (873)
Q Consensus       792 lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~ga~G~klsGAGgGG~v~~l~~~---~~~a~~i~~~L~~~~~~~v~v~~~~  868 (873)
                      +|+.+|.+++.|+  +++|.++.+++++++.++|+|+||||+|||+++|+++   ++.++++.+.|++.   ..+.|+.+
T Consensus       299 lm~~N~~LL~~LG--VS~~~le~iv~~a~~~~~~AKlTGAGgGGC~IaL~~~~~~~~~~~~l~~~l~~~---G~~~~~~~  373 (387)
T PLN02677        299 LMEMNQGLLQCMG--VSHSSIETVLRTTLKYKLVSKLTGAGGGGCVLTLLPTLLSGTVVDKVIAELESS---GFQCFTAG  373 (387)
T ss_pred             HHHHHHHHHHHcC--CCcHHHHHHHHHHHHcCCccccccCCCCCEEEEEcccccchhHHHHHHHHHHHC---CCeEEEEE
Confidence            9999999999996  9999999999999987789999999999999999984   45678899999987   34667776


Q ss_pred             ecc
Q 002861          869 IYL  871 (873)
Q Consensus       869 i~~  871 (873)
                      +..
T Consensus       374 ~g~  376 (387)
T PLN02677        374 IGG  376 (387)
T ss_pred             eCC
Confidence            654

>TIGR00549 mevalon_kin mevalonate kinase

Probab=100.00  E-value=6.9e-37  Score=331.45  Aligned_cols=271  Identities=25%  Similarity=0.329  Sum_probs=215.2

Q ss_pred             eceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCChhHH
Q 002861          533 LPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDPFRL  612 (873)
Q Consensus       533 aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~~~~~  612 (873)
                      ||||++|+|||+|+.      ||.||++||+++++    +.++++++. +.+.++....    +....  +.....|.+|
T Consensus         1 aPgkv~L~GEH~v~~------g~~al~~aI~~~~~----~~~~~~~~~-~~i~~~~~~~----~~~~~--~~~~~~~~~~   63 (273)
T TIGR00549         1 APGKIILFGEHAVVY------GEPAIAAPIPLRTT----VTVIESSDG-SFIESDLGRG----SLDDA--PQELDGLVSY   63 (273)
T ss_pred             CCceEEEEecChhcc------CCCeeEEEecccEE----EEEEEcCCC-ceEeccccCC----cHhHh--hHHHHHHHHH
Confidence            699999999999995      99999999999987    667676554 4444332210    01111  1122458899


Q ss_pred             HHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-cCCCChh
Q 002861          613 VKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL-MGTGGGW  691 (873)
Q Consensus       613 ~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~-~g~~~G~  691 (873)
                      +++++..+..     ....+++|++.|+||.|+|||||||+++|++.|++++++.++++++++++|..+|+. .|.++|.
T Consensus        64 v~~~l~~~~~-----~~~~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~sG~  138 (273)
T TIGR00549        64 IAEALSYFSE-----LNPPPLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAKLANEAEKIAHGKPSGI  138 (273)
T ss_pred             HHHHHHHhhc-----cCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCchH
Confidence            9999887642     112359999999999999999999999999999999999999999999999999984 6889996


Q ss_pred             hhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 002861          692 QDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLT  771 (873)
Q Consensus       692 ~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~  771 (873)
                       ||+++++||+.+++...+.      .++..+      ++.++++++|+.+++|+++++.+.+.....++.....++++.
T Consensus       139 -D~~~~~~Gg~~~~~~~~~~------~~~~~~------~~~~lvl~~tg~~~~T~~~~~~v~~~~~~~~~~~~~~~~~~~  205 (273)
T TIGR00549       139 -DTATSTYGGPVYFEKGEGE------FTKLIS------LDGYFVIADTGVSGSTKEAVARVRQLLERFPELIDSIMDAIG  205 (273)
T ss_pred             -hHHHHhcCCeEEEEcCCCc------eeeccC------CCeEEEEEECCCCCcHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence             9999999999987643321      222222      246899999999999999988764433222223344567777


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEE
Q 002861          772 ELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLL  840 (873)
Q Consensus       772 ~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l  840 (873)
                      +++.++.++|.++|++.||++|+++|..++++  ++++|++++|++.+++ |++|+||||||+|||+++|
T Consensus       206 ~~~~~~~~al~~~d~~~lg~l~~~~~~~l~~~--~vs~p~l~~l~~~~~~~Ga~gaklsGaG~GG~~i~l  273 (273)
T TIGR00549       206 ELTLEAKAALQDGDVESLGELMNINQGLLKAL--GVSHPKLDQLVETARKAGALGAKLTGAGGGGCMIAL  273 (273)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHCCCceeeeccCCCCceEEeC
Confidence            88899999999999999999999999988887  4899999999999987 8999999999999999985

Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.

>PLN02521 galactokinase

Probab=100.00  E-value=6.7e-36  Score=343.54  Aligned_cols=319  Identities=19%  Similarity=0.203  Sum_probs=227.0

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecC-CcEEEEeCCCCc-eeeecCCCCC-CCCC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKM-SGVLISDDAGNQ-LHIEDLTPIA-TPFD  605 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~-~~i~i~~~~~~~-~~~~~l~~l~-~p~~  605 (873)
                      ..++|||||+|+|||+||.      ||.||++||+++++    +.++++++ ..+++.+..... ....+++... .+..
T Consensus        49 ~~~~APGRVnLiGEHtDy~------gg~vLp~AI~~~~~----v~~~~~~~~~~i~i~s~~~~~~~~~~~~~~~~~~~~~  118 (497)
T PLN02521         49 LFARSPGRVNLIGEHIDYE------GYSVLPMAIRQDTI----VAIRRAEGSKKLRIANVNDKYTTCTFPADPDQEVDLA  118 (497)
T ss_pred             EEEECCceEEEeccceeec------CCeEEEEEEcCcEE----EEEEEcCCCCEEEEEECCCCCCceeeecCcccccccc
Confidence            7789999999999999996      99999999999987    77888765 677776543321 1122222211 1112


Q ss_pred             CCChhHHH----HHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 002861          606 HNDPFRLV----KSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLL  681 (873)
Q Consensus       606 ~~~~~~~~----kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~  681 (873)
                      ...|.+|+    ++++..+...........|+++.|.++||.|+|||||||+++|++.|++++++.++++++|+++|+.+
T Consensus       119 ~~~W~nYv~~~~~gv~~~l~~~~~~~~~~~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~~  198 (497)
T PLN02521        119 NHKWGNYFICGYKGVFEFLKSKGVDVGPPVGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKC  198 (497)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhccccCCCCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            34699999    55555443110001123599999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCChhhhhHhhccc--Cee-EEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcch---H----------
Q 002861          682 EQLMGTGGGWQDQIGGLYP--GIK-FTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRL---A----------  745 (873)
Q Consensus       682 E~~~g~~~G~~Dq~~~~~G--G~~-~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~---t----------  745 (873)
                      |+++|+++|+|||+++++|  |.. ++++.   ++  .++++++|.      +..|+|++|+.++.   +          
T Consensus       199 E~~~g~~~g~mDq~as~~g~~g~al~~d~~---~l--~~~~v~~p~------~~~~vv~~s~v~~~k~~~a~~~Yn~R~~  267 (497)
T PLN02521        199 ERHIGTQSGGMDQAISIMAQQGVAKLIDFN---PV--RATDVQLPA------GGTFVIANSLAESNKAVTAATNYNNRVV  267 (497)
T ss_pred             hCccCCCCChHHHHHHHhcCCCcEEEEecC---CC--ceEEeecCC------CcEEEEEECCCcccccccccccccHHHH
Confidence            9999999999999999999  443 33333   33  345565554      46899999884432   2          


Q ss_pred             -----HHHHHH------------------HHHH------------------------------Hhh--c-C---------
Q 002861          746 -----HQVLQK------------------VVTR------------------------------YLQ--R-D---------  760 (873)
Q Consensus       746 -----~~~l~~------------------v~~~------------------------------~~~--~-~---------  760 (873)
                           ..++++                  +...                              +..  . .         
T Consensus       268 ec~~Aa~~L~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~  347 (497)
T PLN02521        268 ECRLAAIVLAVKLGMSAEEAISKVKTLSDVEGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEILGESLTSIFKNSP  347 (497)
T ss_pred             HHHHHHHHHHhhcCCcchhcccccCCHHHHHHHHhhhcccccchhhHHHhhhhhccccCCHHHHHHHhCCcHHHHhhccc
Confidence                 122221                  0000                              000  0 0         


Q ss_pred             ------------HHHHHHHHHHHH--HHHHHHHHHhcc-----CHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc
Q 002861          761 ------------NLLISSIKRLTE--LAKNGRDALMNC-----DVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP  821 (873)
Q Consensus       761 ------------~~~~~~~~~i~~--~~~~~~~AL~~g-----d~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~  821 (873)
                                  ....+..+.+.+  .+.++.++|+++     ++..||++|+++|+++++++ ++++|++|.|++.+++
T Consensus       348 ~~~~~~~~~~~~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~~~~~~~~lg~lm~~sh~slr~~~-~vS~~elD~lv~~a~~  426 (497)
T PLN02521        348 TSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLY-ECSCPELEELVKVCRD  426 (497)
T ss_pred             cccccccccchhHHhhhhhheecHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhhcc-CCCcHHHHHHHHHHHh
Confidence                        000111111112  256777888776     38999999999999999987 5999999999999987


Q ss_pred             -CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhcC-------------CCceEEEEEeec
Q 002861          822 -YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDS-------------NFNSEVYNWNIY  870 (873)
Q Consensus       822 -ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~~-------------~~~v~v~~~~i~  870 (873)
                       |++|+||||||+|||+++|++. +.++++.+.+.+..             +....+|.+++.
T Consensus       427 ~Ga~GaRltGaG~GG~~i~lv~~-~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~  488 (497)
T PLN02521        427 NGALGARLTGAGWGGCAVALVKE-AIVPQFILALKEKFYKSRIEKGVIKEEDLGLYVFASKPS  488 (497)
T ss_pred             cCCcEEEECCCCCCeEEEEEECH-HHHHHHHHHHHHHHHhhccccccccccCCCCcEEEEecC
Confidence             9999999999999999999996 56777777765431             234567776654

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.7e-38  Score=340.96  Aligned_cols=213  Identities=17%  Similarity=0.204  Sum_probs=184.0

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      +||||||+|||++|+.    ++||+|+++.|+|.++|+.|||+.+|+++         +|.+|.|||...         +
T Consensus       125 lsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGim~~D~~~---------~i~~F~eKp~~~---------~  186 (393)
T COG0448         125 LSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENG---------RIIEFVEKPADG---------P  186 (393)
T ss_pred             ecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCceEECCCC---------CEEeeeeccCcC---------C
Confidence            5899999999999999    89999999999999999999999999999         899999999882         3


Q ss_pred             CCccceeeceeeecchHHHHHHhhhc----CCchhhhhhhccccchhhhHHHHhhcccccccccccCCCc--hhHHhh--
Q 002861           77 DGRALLDTGIIAVRGKAWEELVMLSC----SCPPMVSELLKSGKEMSLYEDLVAAWVPAKHDWLMLRPLG--KELVSK--  148 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~~ll~~~~----~~~d~g~d~~~~~~~~~~y~df~~~~~~~~~~Y~~~~pvg--d~~~~~--  148 (873)
                      +...++|||||+|+++.|.++|+.+.    +.|||||+++  |..+....-++|.|    ..||+|  +|  ++||++  
T Consensus       187 ~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~DfgkdiI--p~~~~~~~v~AY~f----~gYw~d--VgTi~syy~aNm  258 (393)
T COG0448         187 PSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDII--PKLLERGKVYAYEF----SGYWRD--VGTIDSYYEANM  258 (393)
T ss_pred             cccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHHH--HHHHhcCCEEEEec----cchhhh--cccHHHHHHhhH
Confidence            36679999999999999999999885    5599999999  55555444555555    349999  97  999998  


Q ss_pred             --hhcCcceE------------EEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEEeeeecC
Q 002861          149 --LGKQRMFS------------YCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAH  214 (873)
Q Consensus       149 --l~~~~i~~------------~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~  214 (873)
                        |...|.+.            ..+||++|.+.                    ..+.+|++++ |||++| .|.||||+.
T Consensus       259 dLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~--------------------s~v~nSLv~~-GciI~G-~V~nSVL~~  316 (393)
T COG0448         259 DLLSPQPELNLYDRNWPIYTKNKNLPPAKFVND--------------------SEVSNSLVAG-GCIISG-TVENSVLFR  316 (393)
T ss_pred             HhcCCCCcccccCCCCceeecCCCCCCceEecC--------------------ceEeeeeeeC-CeEEEe-EEEeeEEec
Confidence              44455442            36788888863                    2367788876 899988 999999999


Q ss_pred             CceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeeeee
Q 002861          215 GVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEV  271 (873)
Q Consensus       215 ~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~~v  271 (873)
                      +|+|+++|+|++|+|+++|.||+||.|++||||++          ++||+|+.|..-
T Consensus       317 ~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~----------v~I~~g~~i~~~  363 (393)
T COG0448         317 GVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKN----------VVIGEGVVIGGD  363 (393)
T ss_pred             CeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCC----------cEeCCCcEEcCC
Confidence            99999999999999999999999999999999998          999999976444

>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]

Probab=100.00  E-value=2.4e-35  Score=316.85  Aligned_cols=293  Identities=24%  Similarity=0.274  Sum_probs=241.0

Q ss_pred             EEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCCh
Q 002861          530 KVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDP  609 (873)
Q Consensus       530 ~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~~  609 (873)
                      .+++|||+.|+|||.-+-      |-.++.+||+++.+    ++++..++..+.+.+.+....      .+.  .+.  .
T Consensus         2 ~~~aPgKliL~GEHAVVy------G~pAI~~aI~~~~~----v~~~~s~~~~~~i~~~~~~~~------~~~--~~~--~   61 (307)
T COG1577           2 SVSAPGKLILFGEHAVVY------GYPAIAAAIDLRVT----VTISESDSNKIVIESSDLKSS------TLE--RDE--D   61 (307)
T ss_pred             cccccccEEEEecceeee------CCchhheeeeeeEE----EEEEecCCCcEEEeccCCCCc------ccc--ccc--c
Confidence            578999999999998773      77899999999987    778777666677765433210      111  111  1


Q ss_pred             hHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHc-CCC
Q 002861          610 FRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM-GTG  688 (873)
Q Consensus       610 ~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~-g~~  688 (873)
                      ..|++.++..+..+..+ ....||+++|.|+||.|+|||||||+++|++.|+++++|.+++++++++++..+|... |.+
T Consensus        62 ~~~~~~~v~~~~e~~~~-~~~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~vqG~~  140 (307)
T COG1577          62 EGYIQAAVRLASELLNQ-SSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKA  140 (307)
T ss_pred             chHHHHHHHHHHHHhcc-cCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCC
Confidence            25777777766532111 2357999999999999999999999999999999999999999999999999999965 667


Q ss_pred             ChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHH
Q 002861          689 GGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIK  768 (873)
Q Consensus       689 ~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~  768 (873)
                      +| .|.+.+++||+..++...      .++++.++.      ...|++.|||.+.+|+++++.|.....+.++.+...++
T Consensus       141 Sg-~D~a~~~~gg~v~~~~~~------~~~~l~~~~------~~~~~I~~tg~~~sT~e~V~~V~~l~~~~~~~~~~~~~  207 (307)
T COG1577         141 SG-IDIATITYGGLVAFKKGF------DFEKLEIEL------LGTLVIGDTGVPGSTKELVAGVAKLLEEEPEVIDPILD  207 (307)
T ss_pred             Cc-ccceEEEeCCEEEEecCC------Ccccccccc------CCeEEEEEcCCcCcHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            76 489999999999987532      234554432      22799999999999999999887665566666778899


Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcchH
Q 002861          769 RLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAESA  847 (873)
Q Consensus       769 ~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~~a  847 (873)
                      .+.+++.++..+|+++|.+.||++|+.+|.+++.+.  +++|++++|++.+++ |+.|+|+||||+|||+++|+++.+.+
T Consensus       208 ~ig~~~~~a~~al~~~d~e~lgelm~~nq~LL~~Lg--Vs~~~L~~lv~~a~~~Ga~gaKlTGAGgGGc~IaL~~~~~~~  285 (307)
T COG1577         208 AIGELVQEAEAALQTGDFEELGELMNINQGLLKALG--VSTPELDELVEAARSLGALGAKLTGAGGGGCIIALAKNEEIA  285 (307)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcC--cCcHHHHHHHHHHHhcCccccccccCCCCceEEEEeccchHH
Confidence            999999999999999999999999999999999996  999999999999997 99999999999999999999975667


Q ss_pred             HHHHHHHHhcC
Q 002861          848 TELRRMLEKDS  858 (873)
Q Consensus       848 ~~i~~~L~~~~  858 (873)
                      +.+...+.+++
T Consensus       286 ~~l~~~~~~~~  296 (307)
T COG1577         286 ETLSNRLEKAG  296 (307)
T ss_pred             HHHHHHHHhcC
Confidence            88888888874

>PRK03926 mevalonate kinase; Provisional

Probab=100.00  E-value=3e-34  Score=315.26  Aligned_cols=290  Identities=21%  Similarity=0.249  Sum_probs=225.8

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND  608 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~  608 (873)
                      +.++|||||+|+|+|+|+.      ||.++++||+++.+    +++++.++ .+.+.....         ..      ..
T Consensus         2 ~~~~aPgkv~L~Geh~~~~------g~~~l~~aI~~~~~----v~i~~~~~-~~~i~~~~~---------~~------~~   55 (302)
T PRK03926          2 VLCSAPGKIYLFGEHAVVY------GKPAIACAIDLRTY----VRAEFNDD-SIYIESDYG---------KT------GE   55 (302)
T ss_pred             eEEeeeeEEEEEecceeec------CCeEEEEEecceEE----EEEEECCC-ceEEecccc---------cc------cc
Confidence            6789999999999999995      99999999999987    67776543 233332110         00      12


Q ss_pred             hhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-cCC
Q 002861          609 PFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL-MGT  687 (873)
Q Consensus       609 ~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~-~g~  687 (873)
                      |..++++++..+..    .....|++|++.++||.|+|||||||+++|++.|++++++.++++++++++|..+|.. .|.
T Consensus        56 ~~~~~~~~~~~~~~----~~~~~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~G~  131 (302)
T PRK03926         56 KHPYVSAAIEKMRE----EADKDGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGA  131 (302)
T ss_pred             hhHHHHHHHHHHHH----hcCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCC
Confidence            44577777765532    1123499999999999999999999999999999999999999999999999999995 577


Q ss_pred             CChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHH
Q 002861          688 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSI  767 (873)
Q Consensus       688 ~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~  767 (873)
                      ++| +|++++++||+.++....         +++.+       ++.++|++|+.+++|+++++.+.......++.+...+
T Consensus       132 ~sg-~D~~~~~~Gg~~~~~~~~---------~l~~~-------~~~~vl~~~~~~~sT~~~~~~~~~~~~~~~~~~~~~~  194 (302)
T PRK03926        132 ASP-TDTYVSTMGGFVTIPDRK---------KLPFP-------ECGIVVGYTGSSGSTKELVANVRKLKEEYPELIEPIL  194 (302)
T ss_pred             Cch-HHHHHHhcCCeEEEcCCC---------cCCCC-------CceEEEEECCCCCcHHHHHHHHHHHHHhCHHHHHHHH
Confidence            777 699999999998765321         23221       4578999999999999988776432222222222345


Q ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcch
Q 002861          768 KRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAES  846 (873)
Q Consensus       768 ~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~~  846 (873)
                      +.+.+++.++..++.++|++.|+++|+++|..++.+  ++++|+++++++.+.+ |++|+||||||+|||+++++++ +.
T Consensus       195 ~~~~~~~~~~~~al~~~d~~~l~~~~~~~~~~~~~~--~~~~p~l~~l~~~~~~~ga~ga~lSGaG~Gg~v~~l~~~-~~  271 (302)
T PRK03926        195 SSIGKISEKGEELILSGDYVSLGELMNINQGLLDAL--GVSTKELSELIYAARTAGALGAKITGAGGGGCMVALAAP-EK  271 (302)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHhCCCceeeeccCCCCCEEEEEecc-cc
Confidence            556677778889999999999999999999776665  4789999999999876 8999999999999999999986 46


Q ss_pred             HHHHHHHHHhcCCCceEEEEEeecc
Q 002861          847 ATELRRMLEKDSNFNSEVYNWNIYL  871 (873)
Q Consensus       847 a~~i~~~L~~~~~~~v~v~~~~i~~  871 (873)
                      ++++.+.+++.   ..++|..+++.
T Consensus       272 ~~~~~~~~~~~---~~~~~~~~~~~  293 (302)
T PRK03926        272 QSEVATAIKIA---GGKPIITKITD  293 (302)
T ss_pred             HHHHHHHHHhc---CCeEEEEecCC
Confidence            78888888875   34567776654

>PRK03817 galactokinase; Provisional

Probab=100.00  E-value=1.9e-34  Score=323.02  Aligned_cols=313  Identities=23%  Similarity=0.227  Sum_probs=227.1

Q ss_pred             EEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCCh
Q 002861          530 KVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDP  609 (873)
Q Consensus       530 ~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~~  609 (873)
                      .++|||||+|+|||+|+.      ||.|+++||+++++    +++++.  ..+.+.+..........++++.   ...+|
T Consensus         2 ~~~APgrv~L~Geh~d~~------~g~~l~~aI~~~~~----v~~~~~--~~~~i~~~~~~~~~~~~~~~~~---~~~~~   66 (351)
T PRK03817          2 KVKSPGRVNLIGEHTDYN------DGYVLPFAINLYTF----LEIEKS--EKFIFYSENFNEEKTFELDKLE---KLNSW   66 (351)
T ss_pred             EEEeeeeEEEeccceeeC------CCeEEEEEecCcEE----EEEEeC--CeEEEEECCCCCcEEEeCCccC---CCCch
Confidence            578999999999999985      99999999999987    677665  3466665443321222333321   23468


Q ss_pred             hHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HcCCC
Q 002861          610 FRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LMGTG  688 (873)
Q Consensus       610 ~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~-~~g~~  688 (873)
                      .+++++++..+..   ......|+++++.++||.|+|||||||+++|++.|++++++.++++++++++|..+|. ..|++
T Consensus        67 ~~~~~~~~~~~~~---~~~~~~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~g~~  143 (351)
T PRK03817         67 ADYIKGVIWVLEK---RGYEVGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVP  143 (351)
T ss_pred             HHHHHHHHHHHHH---cCCCCCCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcccccCCC
Confidence            8899998876531   2234579999999999999999999999999999999999999999999999999998 46999


Q ss_pred             ChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHH--------HHHHHHHHHHh---
Q 002861          689 GGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAH--------QVLQKVVTRYL---  757 (873)
Q Consensus       689 ~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~--------~~l~~v~~~~~---  757 (873)
                      +|++||+++.+|+.......+..+.  .+.++++++      +.++++++|+.++.+.        ....++.+.+.   
T Consensus       144 ~g~~D~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~------~~~~vv~~sg~~~~~~~~~~~~~~~~~~~~~~~l~~~~  215 (351)
T PRK03817        144 CGIMDQFAVAFGKKDHAIFLDTMTL--EYEYVPFPE------DYEILVFDTGVKRELASSEYNERRQECEEALKILGKKS  215 (351)
T ss_pred             CcCchhhheeeccCCEEEEEecCCC--ceEEEecCC------CcEEEEEeCCCccccccchhHHHHHHHHHHHHHhCccc
Confidence            9999999999986432222222222  234555543      4689999999766532        11112111110   


Q ss_pred             ----------hcCHHHHHHHHHHH---HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CC
Q 002861          758 ----------QRDNLLISSIKRLT---ELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YC  823 (873)
Q Consensus       758 ----------~~~~~~~~~~~~i~---~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga  823 (873)
                                .-++...+.+..+.   +.+.++..||.++|++.||++|+++|..+++.+ ++++|++++|++.+++ |+
T Consensus       216 ~~~~~~~~~~~l~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~l~~~s~~~l~~~~-~~s~p~ld~l~~~a~~~Ga  294 (351)
T PRK03817        216 SKEVTEEDLSKLPPLLRKRAGYVLRENERVLKVRDALKEGDIETLGELLTESHWDLADNY-EVSCEELDFFVEFALELGA  294 (351)
T ss_pred             hhcCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHcCC
Confidence                      00111111111111   124678889999999999999999998877654 3789999999999987 99


Q ss_pred             ceEEecCCCccceeEEEeCCcchHHHHHHHHHhc----CCCceEEEEEeec
Q 002861          824 CGYKLVGAGGGGFALLLAKDAESATELRRMLEKD----SNFNSEVYNWNIY  870 (873)
Q Consensus       824 ~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~----~~~~v~v~~~~i~  870 (873)
                      +|+|+||||+|||+++|+++ +.++++.+.+++.    .++.+++|.+.++
T Consensus       295 lGaklsGaG~Gg~vlal~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  344 (351)
T PRK03817        295 YGARLTGAGFGGSAIALVDK-GKFESIGEELLEEYKKRFGIDPKYFVVESS  344 (351)
T ss_pred             CEEEEecCCCCeEEEEEEch-HHHHHHHHHHHHHHHHhcCCCCcEEEEecC
Confidence            99999999999999999986 5666776666553    3467778777653

>PTZ00298 mevalonate kinase; Provisional

Probab=100.00  E-value=7.2e-33  Score=306.96  Aligned_cols=306  Identities=18%  Similarity=0.159  Sum_probs=225.5

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEec-CCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTK-MSGVLISDDAGNQLHIEDLTPIATPFDHN  607 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~-~~~i~i~~~~~~~~~~~~l~~l~~p~~~~  607 (873)
                      ...++||||.|+|||++.-      |...|.++|+++.+    ++++..+ +..+.+.....         .+  +....
T Consensus        11 ~~~~~~~kvil~GEHaVvy------g~~aI~~~I~~~d~----~~i~~~~~~~~~~~~~~~~---------~~--~~~~~   69 (328)
T PTZ00298         11 GKHIGYGKVILFGEHFVVY------GAEAIVAGIDEYTE----CRLELTKGVPGLQVVDQRP---------AV--PGYIV   69 (328)
T ss_pred             cCCCcCeeEEEEecceeec------CCchhhhecccceE----EEEEEccCCCCceeccccc---------cc--cchHH
Confidence            5678999999999999984      88999999999865    4555332 22222211100         01  10000


Q ss_pred             ChhHH-HHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-Hc
Q 002861          608 DPFRL-VKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LM  685 (873)
Q Consensus       608 ~~~~~-~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~-~~  685 (873)
                      +--++ .|++........ ......|++|+|.++||.|+|||||||+++|++.|++++++.++++++|+++|..+|+ +.
T Consensus        70 ~~~n~~~~a~~~~~~~~~-~~~~~~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~ls~~el~~~a~~~E~~~~  148 (328)
T PTZ00298         70 EKREEQRKAHQLVLRHLN-IDTSVDGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGGYH  148 (328)
T ss_pred             HhHHHHHHHHHHHHHHHh-cccCCCCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhc
Confidence            01122 233222221110 0011258999999999999999999999999999999999999999999999999999 46


Q ss_pred             CCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHH
Q 002861          686 GTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLIS  765 (873)
Q Consensus       686 g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~  765 (873)
                      |.++|. |++++++||+.+++...+.   ..+.|+++++      +..+++++|+.+++|.++++.+.+.....+..+..
T Consensus       149 g~~sG~-D~~~~~~Gg~~~~~~~~g~---~~~~~l~~~~------~~~lvv~~~~~~~sT~~~~~~v~~~~~~~p~~~~~  218 (328)
T PTZ00298        149 GTPSGA-DNTAATYGGLISYRRVNGK---SVFKRIAFQQ------PLYLVVCSTGITASTTKVVGDVRKLKENQPTWFNR  218 (328)
T ss_pred             CCCChH-HHHHHHcCCeEEEecCCCc---cceeEecCCC------CCeEEEEECCCchhHHHHHHHHHHHHhcCHHHHHH
Confidence            889997 8899999999987754332   2345665443      45799999999999999987654322222223344


Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCc
Q 002861          766 SIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDA  844 (873)
Q Consensus       766 ~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~  844 (873)
                      .++++.+++.++..+|.++|++.++++|+++|+.++.+.  +++|+++++++.+++ |++|+||||||+|||+++|++++
T Consensus       219 ~~~~~~~~~~~~~~al~~~d~~~lg~~m~~~~~~l~~~~--v~~p~l~~l~~~~~~~Ga~gaklSGsG~GG~v~al~~~~  296 (328)
T PTZ00298        219 LLENYNACVSEAKEALQKGNLFRVGELMNANHDLCQKLT--VSCRELDSIVQTCRTYGALGAKMSGTGRGGLVVALAASE  296 (328)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHhCCCceeEeccCCCCeEEEEEecch
Confidence            566777788899999999999999999999998888774  789999999999987 89999999999999999999876


Q ss_pred             chHHHHHHHHHhcCC--CceEEEEEe
Q 002861          845 ESATELRRMLEKDSN--FNSEVYNWN  868 (873)
Q Consensus       845 ~~a~~i~~~L~~~~~--~~v~v~~~~  868 (873)
                      +.++++.+.+++...  -...++.+.
T Consensus       297 ~~a~~~~~~l~~~~~~~~~~w~~~~~  322 (328)
T PTZ00298        297 DQRDAIAKAVRARCPEAKFVWRYTVQ  322 (328)
T ss_pred             hhHHHHHHHHHHHhhhcCCeEEEEec
Confidence            778888888877532  234455443

>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]

Probab=99.97  E-value=3.6e-28  Score=255.09  Aligned_cols=304  Identities=19%  Similarity=0.215  Sum_probs=217.8

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCC---------
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTP---------  599 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~---------  599 (873)
                      ..|+|||||.|+|||...      ||...+.+||+++++    +++.+..+..|.+.-.+..-....++.+         
T Consensus         5 l~vsaPGKvILfGEHAVV------yg~~AlAaai~LrTy----l~l~~san~~i~l~l~di~~~~~w~l~~~~~~l~~~~   74 (397)
T KOG1511|consen    5 LLVSAPGKVILFGEHAVV------YGRTALAAAIDLRTY----LRLQTSANDRILLQLPDISIEKAWSLADFNGALPEQR   74 (397)
T ss_pred             eeecCCccEEEeccceeE------ECCceeEEEeeccee----EEEEecCCCeEEEecccCCceEEEEhhhhhhhhhhhh
Confidence            578999999999999876      599999999999998    5665665566665422222112222222         


Q ss_pred             -----CCCCCCC--------------CChhH-HHHHHHHHhhhhhhccccccC----EEEEEeeccCCCCCCChHHHHHH
Q 002861          600 -----IATPFDH--------------NDPFR-LVKSALLVTGVIHEKLIESMG----LQIRTWANVPRGSGLGTSSILAA  655 (873)
Q Consensus       600 -----l~~p~~~--------------~~~~~-~~kaal~~~~~~~~~~~~~~G----~~i~i~s~IP~GsGLGSSSAlav  655 (873)
                           .++|...              +...- ...+++..+...-.-....+|    +.+.++|.+|.|+|||||||+.|
T Consensus        75 ~~~~~~q~p~~~~~~e~~k~l~~l~~~~~~~~~~~a~~~~lYlf~~l~~~~~g~lp~~~v~v~SelP~GaGLGSSAa~sv  154 (397)
T KOG1511|consen   75 STYESVQTPASEVRVELLKQLGGLLENQEKVKEHLAGLSFLYLFLGLCLRAPGTLPALTVVVDSELPLGAGLGSSAAISV  154 (397)
T ss_pred             hhhhccCCcchhhhHHHHHHhhhhhhcchhhhHHHHHHHHHHHHHHhhhcccCCCcceEEEEeccCCCcCCcchhHHHHH
Confidence                 1111100              00000 111111111000000113345    99999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCH-----------HHHHHHHHHHHHHc-CCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCC
Q 002861          656 AVVKALLQITDGDQSN-----------ENVARLVLLLEQLM-GTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLAS  723 (873)
Q Consensus       656 A~l~Al~~~~g~~ls~-----------~eL~~la~~~E~~~-g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~  723 (873)
                      +++.++..++|.--++           +-|-+.|.+.|..+ |+|+|+ |.+.+.|||...+.  .|.    +++.++..
T Consensus       155 ~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGi-DnaV~t~Gg~i~f~--kg~----~~~~Lk~~  227 (397)
T KOG1511|consen  155 ALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSGI-DNAVCTYGGLISFK--KGV----EIESLKHL  227 (397)
T ss_pred             HHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCccc-chhhhccCceEEee--cCc----cceecccC
Confidence            9999999988864222           34567888888854 899999 55679999997765  342    23444433


Q ss_pred             hhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhcc----CHH---HHHHHHHHH
Q 002861          724 PQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNC----DVD---ELGKIMLEA  796 (873)
Q Consensus       724 ~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~g----d~~---~lg~lm~~~  796 (873)
                      +      ..++++++|.++|+|+.+++.|..+..+.++.+...+..+.+++.++...+.++    +..   .|.++|..+
T Consensus       228 ~------~L~illtnTrv~RnTk~lVa~Vr~~~~kfPevi~~i~~aid~is~ea~~il~~e~~~~~~~~Eq~L~eLi~iN  301 (397)
T KOG1511|consen  228 P------PLRILLTNTRVPRNTKALVAGVRELLEKFPEVIKAIFDAIDEISLEAVWILQRENDEFSSPKEQKLEELIRIN  301 (397)
T ss_pred             C------CceEEEEccccCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHh
Confidence            2      458999999999999999999877665556666677888888999999999842    222   599999999


Q ss_pred             HHHHhhhCCCCChHHHHHHHHHHccCCceEEecCCCccceeEEEeCCcc---hHHHHHHHHHhc
Q 002861          797 WRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAE---SATELRRMLEKD  857 (873)
Q Consensus       797 ~~~~~~l~~~vs~p~l~~l~~~a~~ga~G~klsGAGgGG~v~~l~~~~~---~a~~i~~~L~~~  857 (873)
                      +.++..++  +++|.++.++...++..+.+||||||+|||++.|.+...   ..+.+++.|+..
T Consensus       302 q~LL~alG--VsH~~le~v~~~t~k~gi~sKLTGAGgGGc~itlL~~~~~qe~i~~~ke~L~s~  363 (397)
T KOG1511|consen  302 QDLLDALG--VSHPSLELVCTTTRKLGIHSKLTGAGGGGCVITLLKPGTEQEQIDKWKEELESH  363 (397)
T ss_pred             HHHHHHhC--CCcHHHHHHHHHHHHhCcceecccCCCCceEEEEECCCCchHHHHHHHHHHHhc
Confidence            99999995  999999999999999788889999999999999998643   566777777776

>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=99.94  E-value=1.7e-25  Score=244.05  Aligned_cols=276  Identities=18%  Similarity=0.160  Sum_probs=201.0

Q ss_pred             EEEEeceEEEe----ecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCC
Q 002861          529 VKVELPVRIDF----AGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPF  604 (873)
Q Consensus       529 v~v~aP~Rv~L----~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~  604 (873)
                      +.++|||||||    .|.|.|-  |   |...++.+||+++.+    +++++.++..+.+.....         .  .|.
T Consensus         3 ~~~~apakinl~l~i~g~~~dg--~---h~l~si~~ai~l~~~----v~v~~~~~~~~~i~~~~~---------~--~~~   62 (286)
T PRK00128          3 ILEKAPAKINLSLDVLGKREDG--Y---HEVEMIMQTIDLADR----LEIEKLKEDGIVVESNNR---------Y--VPN   62 (286)
T ss_pred             EEEeccceEEEEeecCccCCCC--c---ceeheeeEecCCCcE----EEEEECCCCCEEEEeCCC---------C--CCC
Confidence            67899999999    7999882  2   688999999999997    778776554455543211         1  121


Q ss_pred             CCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 002861          605 DHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL  684 (873)
Q Consensus       605 ~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~  684 (873)
                      +   +.+++..++..+.   +.+....|++|++.++||.|+|||||||+++|++.|++++++.++++++++++|.++|. 
T Consensus        63 ~---~~n~~~~~~~~~~---~~~~~~~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l~~~~l~~~a~~~g~-  135 (286)
T PRK00128         63 D---ERNLAYKAAKLLK---ERYNIKQGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLEIGS-  135 (286)
T ss_pred             C---CCcHHHHHHHHHH---HhcCCCCCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCC-
Confidence            1   2234444444332   12223468999999999999999999999999999999999999999999999988863 


Q ss_pred             cCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHH
Q 002861          685 MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLI  764 (873)
Q Consensus       685 ~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~  764 (873)
                              |++++++||+.+.... +.    .+.+++.++      +..+++++|+...+|.++++.+..... .     
T Consensus       136 --------dv~~~~~Gg~~~~~~~-g~----~~~~~~~~~------~~~~vv~~p~~~~~T~~~~~~~~~~~~-~-----  190 (286)
T PRK00128        136 --------DVPFCIYGGTALATGR-GE----KITPLKSPP------SCWVVLAKPDIGVSTKDVYKNLDLDKI-S-----  190 (286)
T ss_pred             --------CCCeEeeCCeEEEecC-Cc----ccccCCCCC------CcEEEEEcCCCCCCHHHHHhcCccccc-c-----
Confidence                    8889999999887643 32    234554332      457999999999999987765311100 0     


Q ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCC
Q 002861          765 SSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKD  843 (873)
Q Consensus       765 ~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~  843 (873)
                            ...+..+..++.++|++.++++|.+..+..+.    ...|+++++++.+++ |++|+++||||+  ++++|+++
T Consensus       191 ------~~~~~~~~~~l~~~d~~~~~~~~~n~l~~~~~----~~~p~l~~l~~~~~~~Ga~g~~lSGsG~--sv~~l~~~  258 (286)
T PRK00128        191 ------HPDTEKLIEAIEEGDYQGICANMGNVLENVTL----KKYPEIAKIKERMLKFGADGALMSGSGP--TVFGLFDD  258 (286)
T ss_pred             ------CcchHHHHHHHhcCCHHHHHHhccCcHHHHHH----hhChHHHHHHHHHHhcCCCeeEEcccCc--cEEEEeCC
Confidence                  11234678899999999999988754432221    136899999999987 899999999996  99999987


Q ss_pred             cchHHHHHHHHHhcCCCceEEEEEeecc
Q 002861          844 AESATELRRMLEKDSNFNSEVYNWNIYL  871 (873)
Q Consensus       844 ~~~a~~i~~~L~~~~~~~v~v~~~~i~~  871 (873)
                      ++.++++.+.+++..   ..++..++..
T Consensus       259 ~~~~~~i~~~l~~~~---~~~~~~~~~~  283 (286)
T PRK00128        259 ESRAQRIYNGLKGFC---KEVYLVRTLG  283 (286)
T ss_pred             HHHHHHHHHHhHhhc---CcEEEEeeec
Confidence            667889999998752   2455555543

>PLN02451 homoserine kinase

Probab=99.94  E-value=1e-24  Score=243.93  Aligned_cols=305  Identities=18%  Similarity=0.123  Sum_probs=210.3

Q ss_pred             CCCCCCeEEEEeceEEEeecccccCCCcccCCCCeEEEeeee-cccccceeEEEEEecC---CcEEEEeCCCCceeeecC
Q 002861          522 HPFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAIS-LESSLPIGTIIETTKM---SGVLISDDAGNQLHIEDL  597 (873)
Q Consensus       522 ~~~~~~~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~-l~~~~pi~~~v~~~~~---~~i~i~~~~~~~~~~~~l  597 (873)
                      .++.-..+.+++|+++.++|.++|+           +++|++ +|.+    +++++.+.   ..+.+....+.      .
T Consensus        47 ~~~~~~~~~~~aPA~~ANLGpgfD~-----------lG~a~d~l~d~----v~~~~~~~~~~~~~~i~~~~g~------~  105 (370)
T PLN02451         47 PEPVFTSVKAFAPATVANLGPGFDF-----------LGCAVDGLGDF----VTARVDPGVRPGEVSISEITGD------T  105 (370)
T ss_pred             chhhcceEEEEeccchhhcccChhh-----------hhhhhccCcCE----EEEEECCCCCcccEEEEEeccc------c
Confidence            3334457999999999999999998           788888 9987    77776543   24555431111      0


Q ss_pred             CCCCCCCCCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 002861          598 TPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARL  677 (873)
Q Consensus       598 ~~l~~p~~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~l  677 (873)
                      +.+  |.++.+.. ..+++...+..   ......|++|++.++||.|+|||||||+++|++.|+++++|.++++++|+++
T Consensus       106 ~~l--~~~~~~Nl-v~~a~~~~~~~---~g~~~~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~l  179 (370)
T PLN02451        106 GRL--SKDPLRNC-AGIAAIATMKL---LGIRSVGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLA  179 (370)
T ss_pred             ccC--CCCcccCc-HHHHHHHHHHH---cCCCCCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            112  22211111 23444333221   1122469999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHh
Q 002861          678 VLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYL  757 (873)
Q Consensus       678 a~~~E~~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~  757 (873)
                      +.++|..... .+.||.+++++||+.+....+.  .  .+.+++++.    ..++++++++++...+|+++.+.+.+.+ 
T Consensus       180 a~~~E~~v~g-~h~Dnva~a~~GG~v~~~~~~~--~--~~~~~~~p~----~~~~~~Vlv~P~~~~sT~~ar~~lp~~~-  249 (370)
T PLN02451        180 GLESEAKVSG-YHADNIAPALMGGFVLIRSYEP--L--HLIPLRFPS----AKDLFFVLVSPDFEAPTKKMRAALPKEI-  249 (370)
T ss_pred             HHHHhchhcC-CCccchhHhhcCCEEEEEecCC--C--eEEEeecCC----CCCeEEEEEcCCCCccHHHHHHHHhhhc-
Confidence            9999984321 2445566689999998864432  2  334444431    0256899999999889988876442221 


Q ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccce
Q 002861          758 QRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGF  836 (873)
Q Consensus       758 ~~~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~  836 (873)
                      ..... ...+.+    ...+..+|.++|++.++++|++.+.......  ...|+++++++.+++ |++|++|||||+  +
T Consensus       250 ~~~~~-v~~~~~----~~~l~~al~~~d~~~l~~~m~nD~~~e~~r~--~~~P~l~~l~~~~~~~GA~ga~mSGSGp--t  320 (370)
T PLN02451        250 PMKHH-VWNCSQ----AAALVAAILQGDAVLLGEALSSDKIVEPTRA--PLIPGMEAVKKAALEAGAYGCTISGAGP--T  320 (370)
T ss_pred             chhhH-HHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhHHHHh--hhCccHHHHHHHHHHCCCeEEEEEccch--h
Confidence            11111 111222    2356789999999999999986532222222  357899999999987 999999999999  9


Q ss_pred             eEEEeCCcchHHHHHHHHHhc----CCCceEEEEEeeccC
Q 002861          837 ALLLAKDAESATELRRMLEKD----SNFNSEVYNWNIYLE  872 (873)
Q Consensus       837 v~~l~~~~~~a~~i~~~L~~~----~~~~v~v~~~~i~~~  872 (873)
                      +|+++++++.++++.+.+++.    .+...+++..+++.+
T Consensus       321 vfal~~~~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~d~~  360 (370)
T PLN02451        321 AVAVIDDEEKGEEVGERMVEAFRKAGNLKATASVKKLDRV  360 (370)
T ss_pred             eEEEEcCHHHHHHHHHHHHHHHHHhcCCCceEEEeccCCC
Confidence            999998766778888888753    235678888877753

>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]

Probab=99.93  E-value=5.7e-25  Score=241.27  Aligned_cols=310  Identities=18%  Similarity=0.170  Sum_probs=198.5

Q ss_pred             eEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCc--EEEEeCCCCc-eeeecCCC--CCC
Q 002861          528 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSG--VLISDDAGNQ-LHIEDLTP--IAT  602 (873)
Q Consensus       528 ~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~--i~i~~~~~~~-~~~~~l~~--l~~  602 (873)
                      ..++++||||||+|||.||.      ++.|++|||+....    +.++++++..  +++.+.+... .....+..  ...
T Consensus        39 ~~~a~~PgRVnLiGEHiDy~------~~sVlpmaid~~~l----~~~~~~~d~~~sl~~tN~~~~f~~~~~~~p~~~~~I  108 (489)
T KOG0631|consen   39 VFVARAPGRVNLIGEHIDYC------GYSVLPMAIDVDTL----IAVAPSDDGIVSLRLTNFNPDFIYFKYPLPSIVWQI  108 (489)
T ss_pred             eEEEecCCceecccceeeec------CceeeeEEeeeeeE----EEEEEcCCCceeEEEecCCCccceeeccCCchhccc
Confidence            48899999999999999996      88899999999986    5677887777  4444322111 01111111  111


Q ss_pred             CCCCCChhHHH----HHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHh-CCC--CCHHHHH
Q 002861          603 PFDHNDPFRLV----KSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQIT-DGD--QSNENVA  675 (873)
Q Consensus       603 p~~~~~~~~~~----kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~-g~~--ls~~eL~  675 (873)
                      ..+...|.+|+    +++..+....+.......|+.+...+++|.|+||+||||+..++..|..++. |.+  ..+.+++
T Consensus       109 ~~~~~~w~ny~~C~~~g~h~~~~~~~~~~~~~vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~  188 (489)
T KOG0631|consen  109 DPDVSKWENYFYCGMKGFHEYIKRKPVRFEPPVGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLA  188 (489)
T ss_pred             CCCccchhhhhccchHHHHHHHhccccccCCCcceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            12445799999    4444333110111112259999999999999999999999999999988888 877  7899999


Q ss_pred             HHHHHHHHHcCCCChhhhhHhhcccCeeEEecCC--CCcceeEEEeecCChhhhhhcCcEEEEEEeCCcc----------
Q 002861          676 RLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFP--GIPLRLQVIPLLASPQLILELQQRLLVVFTGQVR----------  743 (873)
Q Consensus       676 ~la~~~E~~~g~~~G~~Dq~~~~~GG~~~~~~~~--~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr----------  743 (873)
                      ++....|.+.|+++|.|||+++++|--......+  -.|.  +..+++.++      ...|++.++...+          
T Consensus       189 ~i~~~ae~~~G~~~gGmdq~asvl~~~~~Al~v~~~~~Pf--~~~~lk~~~------~~vfvI~~~L~~~nk~~~a~tny  260 (489)
T KOG0631|consen  189 TITVVAESYIGLNSGGMDQAASVLAEKGHALLVDPYFTPF--RRSMLKLPD------GGVFVIANSLVESNKAETAETNY  260 (489)
T ss_pred             cceEEeecccCcCCCcHHHHHHHHHhcCceEEecccCCcc--ccccccCCC------CceEEEechhhhhcchhhhhhhh
Confidence            9999999999999999999999987543322222  1121  222233222      1255555442110          


Q ss_pred             --------hHHHHHHH-----------------------------------HHHHHhhc---------------CHHH--
Q 002861          744 --------LAHQVLQK-----------------------------------VVTRYLQR---------------DNLL--  763 (873)
Q Consensus       744 --------~t~~~l~~-----------------------------------v~~~~~~~---------------~~~~--  763 (873)
                              .+...+.+                                   .++.....               ..++  
T Consensus       261 nlRv~E~~ia~~~la~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~v~~~~~~e~f~~ee~~~~l~~~~~~f~~  340 (489)
T KOG0631|consen  261 NLRVVEGTIAAGELAAKILVELPAYILRYQLQRAWRGDIGEGYERAEEMLGLVEESLKPEGFNIEEVARALGLDTEEFLQ  340 (489)
T ss_pred             hceeEeeehhhHHHHHHhhcccHHHHHhhhhhhccccccchhHHHHHHHHHHHHhhcCcCCCCHHHHHHHhccchHHHHH
Confidence                    00011110                                   00000000               0000  


Q ss_pred             ------------HHHHHHHHHH------HHHHHHHHhc------cCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHH
Q 002861          764 ------------ISSIKRLTEL------AKNGRDALMN------CDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFA  819 (873)
Q Consensus       764 ------------~~~~~~i~~~------~~~~~~AL~~------gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a  819 (873)
                                  ....++-++.      +.+...++.+      |.+..+|+||+++|++...+++ +++|++++|++++
T Consensus       341 ~~~T~~~v~~~~~k~~~rakHv~sea~rv~q~~~~~~~a~~~~d~~~~~~g~LmneS~~Sc~~~yE-cscpel~qL~kia  419 (489)
T KOG0631|consen  341 SLLTLAAVDLQVKKLYQRAKHVYSEALRVLQEEKLCARAPGRADGFLADFGRLMNESHRSCDVLYE-CSCPELDQLCKIA  419 (489)
T ss_pred             HhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHhhhhhHHHHHHHh-cCCHhHHHHHHHH
Confidence                        0000111111      1111122222      3367899999999999999985 9999999999999


Q ss_pred             cc-CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhc
Q 002861          820 DP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD  857 (873)
Q Consensus       820 ~~-ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~  857 (873)
                      ++ |+.|+++||||||||.+.+++. +..+.+.+.+.+.
T Consensus       420 la~g~~gaRlTGaGwGGc~v~lvp~-d~~~~~~~~~~~~  457 (489)
T KOG0631|consen  420 LANGGVGARLTGAGWGGCTVALVPA-DLVDFAVAALKEI  457 (489)
T ss_pred             HhcCCccceeeccccccceeeeccc-cchHHHHHhhhhh
Confidence            97 8999999999999999999984 5677777776653

>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]

Probab=99.93  E-value=4.2e-24  Score=227.56  Aligned_cols=281  Identities=21%  Similarity=0.217  Sum_probs=201.1

Q ss_pred             eEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 002861          528 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN  607 (873)
Q Consensus       528 ~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~  607 (873)
                      .+++++|+...++|.++|+           +++|++++.+    +.+....+ .+++..+...        ....|.+++
T Consensus         3 ~~~v~aPASSANlGpGFD~-----------lGlAl~~~~~----~~v~~~~~-~~~i~~~g~~--------~~~iP~~~~   58 (299)
T COG0083           3 MMKVRVPASSANLGPGFDV-----------LGLALDLYND----VVVVEVVD-KFEIEVEGEG--------ADKIPLDPE   58 (299)
T ss_pred             eEEEEEeecccccCCCccc-----------eeeeccccCc----EEEEEecC-cEEEEEeccc--------ccCCCCCcc
Confidence            4789999999999999998           8999999987    44444433 4455432211        112244444


Q ss_pred             ChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCC
Q 002861          608 DPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGT  687 (873)
Q Consensus       608 ~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~  687 (873)
                      +  -..+++...+.    ......+++|+++++||.|+|||||+|.+||.+.|+|++++.+++++++.+++..+|.    
T Consensus        59 n--~~~~~~~~~~~----~~~~~~~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~Eg----  128 (299)
T COG0083          59 N--LVYQAALKFLE----ALGIEAGVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEG----  128 (299)
T ss_pred             e--eHHHHHHHHHH----HhCCCccEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcC----
Confidence            4  24455555443    2223345999999999999999999999999999999999999999999999999996    


Q ss_pred             CChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCC---cchHHHHHHHHHHHHhhcCHHHH
Q 002861          688 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQ---VRLAHQVLQKVVTRYLQRDNLLI  764 (873)
Q Consensus       688 ~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~---tr~t~~~l~~v~~~~~~~~~~~~  764 (873)
                        +.||++++++||+.+.....+    +...++++++      +++++++.++.   |+.+|++|++.+..     .+  
T Consensus       129 --HpDNVapa~lGG~~l~~~~~~----~~~~~v~~~~------~~~~v~~iP~~e~sT~~aR~vLP~~~~~-----~d--  189 (299)
T COG0083         129 --HPDNVAPAVLGGLVLVEEESG----IISVKVPFPS------DLKLVVVIPNFEVSTAEARKVLPKSYSR-----KD--  189 (299)
T ss_pred             --CCchHHHHhhCCEEEEeecCC----ceEEEccCCc------ceEEEEEeCCccccHHHHHHhccccCCH-----HH--
Confidence              558999999999877664222    3445565554      56889998876   55566677764432     12  


Q ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH--HhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEe
Q 002861          765 SSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRL--HQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLA  841 (873)
Q Consensus       765 ~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~--~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~  841 (873)
                       .+.++.. +.-++.||.++|.+.+..+|++..++  ++.+     .|.+.++.+.+.+ |++|+.+||||+  ++++++
T Consensus       190 -aV~n~s~-~a~lv~al~~~~~~l~~~~~~D~ihepyR~~L-----~P~~~~v~~~a~~~gA~g~~lSGAGP--Ti~al~  260 (299)
T COG0083         190 -AVFNLSR-AALLVAALLEGDPELLRAMMKDVIHEPYRAKL-----VPGYAEVREAALEAGALGATLSGAGP--TVFALA  260 (299)
T ss_pred             -HHHHHHH-HHHHHHHHHcCCHHHHHHHhccccchhhhhhh-----CccHHHHHHHHhhCCceEEEEecCCC--eEEEEe
Confidence             2333322 34588999999988888888887554  3444     4788889888887 999999999999  999999


Q ss_pred             CCcchHHHHHHHHHhc--CCCceEEEEEeecc
Q 002861          842 KDAESATELRRMLEKD--SNFNSEVYNWNIYL  871 (873)
Q Consensus       842 ~~~~~a~~i~~~L~~~--~~~~v~v~~~~i~~  871 (873)
                      ++. .++.+...+++.  .++...++.++++.
T Consensus       261 ~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~  291 (299)
T COG0083         261 DES-DAEKAAALLEELYEQGIKGRVHILALDS  291 (299)
T ss_pred             ccc-hhhHHHHHHHHHHHhCCcceEEEEeecC
Confidence            975 444444444432  14666777776653

>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=99.93  E-value=1.1e-23  Score=232.35  Aligned_cols=290  Identities=14%  Similarity=0.138  Sum_probs=204.1

Q ss_pred             eEEEEeceEEEe----eccccc-CCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCC
Q 002861          528 TVKVELPVRIDF----AGGWSD-TPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIAT  602 (873)
Q Consensus       528 ~v~v~aP~Rv~L----~G~~tD-~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~  602 (873)
                      .++++|||||||    +|++.| |      |.+.++.++|+++.+    +++++.++..+.+.....         .+  
T Consensus         3 ~~~~~apakiNL~L~i~g~~~dGy------~~l~~~~~~i~l~d~----v~v~~~~~~~~~~~~~~~---------~~--   61 (312)
T PRK02534          3 SYTLIAPAKINLHLEILGDRPDGF------HELAMVMQSIDLADR----LELRNNGDGTIRLHCDHP---------QL--   61 (312)
T ss_pred             eEEEEeceEEEeccccCccCCCCC------CceEEEEEECCCCCE----EEEEECCCCcEEEEECCC---------CC--
Confidence            377899999999    799999 5      588899999999987    777776555555543211         11  


Q ss_pred             CCCCCChhHHHHHHHHHhhhhhhccccc-cCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 002861          603 PFDHNDPFRLVKSALLVTGVIHEKLIES-MGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLL  681 (873)
Q Consensus       603 p~~~~~~~~~~kaal~~~~~~~~~~~~~-~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~  681 (873)
                      |.+   ..+++..++..+.   +.+... .|++|++.++||.|+|||||||+++|++.|++++++.++++++++++|.++
T Consensus        62 ~~~---~~n~~~~~~~~~~---~~~~~~~~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~l~~~~l~~~a~~~  135 (312)
T PRK02534         62 STD---DDNLIYRAAQLLR---KRFPFAEGGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGLTQPELESLAAEL  135 (312)
T ss_pred             CCC---chhHHHHHHHHHH---HHhCCCCCCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh
Confidence            211   1235555544432   122222 689999999999999999999999999999999999999999999999887


Q ss_pred             HHHcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEE-EeCCcchHHHHHHHHHHHHhhc-
Q 002861          682 EQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVV-FTGQVRLAHQVLQKVVTRYLQR-  759 (873)
Q Consensus       682 E~~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv-~tg~tr~t~~~l~~v~~~~~~~-  759 (873)
                      |.         |+.++++||+.+.... +.    .+.++..++      ++.++++ +++...+|+++.+.+.+..... 
T Consensus       136 g~---------dv~~~~~GG~~~~~~~-g~----~~~~~~~~~------~~~~vv~~~p~~~~~T~~a~~~~~~~~~~~~  195 (312)
T PRK02534        136 GS---------DVPFCIAGGTQLCFGR-GE----ILEPLPDLD------GLGVVLAKYPSLSVSTPWAYKTYRQQFGDTY  195 (312)
T ss_pred             CC---------CCcEEeECCeEEEECC-CC----EeEECCCCC------CcEEEEEECCCCCccHHHHHHHHhhhccccc
Confidence            52         8889999999877643 32    246665443      4678887 6999899988875432211110 


Q ss_pred             --CHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHc-c-CCceEEecCCCccc
Q 002861          760 --DNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFAD-P-YCCGYKLVGAGGGG  835 (873)
Q Consensus       760 --~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~-~-ga~G~klsGAGgGG  835 (873)
                        .......+..+. ....+..+|.++|++.+++.|++..+  +...+  ..|+++++++.+. + |++|+.|||+|+  
T Consensus       196 ~~~~~~~~~~~~~~-~~~~l~~al~~~d~~~~~~~~~n~l~--~~~~~--~~~~i~~~~~~l~~~~Ga~~~~lSGsGp--  268 (312)
T PRK02534        196 LSDEEDFEQRRQAL-RSGPLLQAISAKDPPPIAQLLHNDLE--KVVLP--EYPQVAKLLELLSSLPGCLGTMMSGSGP--  268 (312)
T ss_pred             ccCccccccccccc-chhHHHHhhhccCHHHHHHhhhCchH--HHhHh--cChHHHHHHHHHHhccCCCeeEEECcCc--
Confidence              000011112221 12346789999999999887753322  22211  4688999888776 6 999999999998  


Q ss_pred             eeEEEeCCcchHHHHHHHHHhcC-CCceEEEEEeecc
Q 002861          836 FALLLAKDAESATELRRMLEKDS-NFNSEVYNWNIYL  871 (873)
Q Consensus       836 ~v~~l~~~~~~a~~i~~~L~~~~-~~~v~v~~~~i~~  871 (873)
                      ++|+++++.+.++++.+.+++.. ....+++..+++.
T Consensus       269 tv~~l~~~~~~a~~~~~~l~~~~~~~~~~v~i~~~~n  305 (312)
T PRK02534        269 TCFALFESQEQAEQALEQVREAFADPGLDAWVCQFIS  305 (312)
T ss_pred             ceEEEeCCHHHHHHHHHHHHHHhccCceEEEEEEecC
Confidence            99999998667888888887653 2345788877764

>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch

Probab=99.92  E-value=6.2e-23  Score=232.07  Aligned_cols=321  Identities=16%  Similarity=0.142  Sum_probs=219.3

Q ss_pred             EEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecC-C-----cEEEEeCCCCce--ee-ecCCCC-
Q 002861          531 VELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKM-S-----GVLISDDAGNQL--HI-EDLTPI-  600 (873)
Q Consensus       531 v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~-~-----~i~i~~~~~~~~--~~-~~l~~l-  600 (873)
                      ++||||+-++||..-.-|     |-..+-+|++.+.+    ++|++.+. .     .|.+.+.++...  .. .+.+.. 
T Consensus         2 ~sAPGKlliAGgYlVLep-----~y~aiVval~~r~~----a~v~~~~~~~~~~~~~i~v~SpQf~~~~~~y~~~~~~~~   72 (454)
T TIGR01219         2 ASAPGKVLMAGGYLVLDK-----PYAGLVLGLNARFY----AIVKPINEEVGAWKWDVRVKSPQFSDREWLYKISLNHLT   72 (454)
T ss_pred             cccCceEEEecceEEecC-----CCcEEEEEecceEE----EEEeecccccccCcceEEEeCCCCCCCceEEEEecCCcc
Confidence            579999999999665532     22457778888876    67765432 1     255665544311  00 000110 


Q ss_pred             -C---C-CCCCCChhHHHHHHHHHhh-hhhhcccc---ccCEEEEEeecc-------------------C--------CC
Q 002861          601 -A---T-PFDHNDPFRLVKSALLVTG-VIHEKLIE---SMGLQIRTWANV-------------------P--------RG  644 (873)
Q Consensus       601 -~---~-p~~~~~~~~~~kaal~~~~-~~~~~~~~---~~G~~i~i~s~I-------------------P--------~G  644 (873)
                       .   . ....++...++.+++..+. .+......   ..+++|+|.++.                   +        .+
T Consensus        73 ~~~~~~~~~~~~~~n~fv~~ai~~~~~y~~~~~~~~~~l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~~K  152 (454)
T TIGR01219        73 LQSVSASDSRNPFVNPFIQYAIAAVHLYFDKESLHKLLLQGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEVAK  152 (454)
T ss_pred             ceeecccccCCCCCChHHHHHHHHHHHHHHhccccccccCceEEEEEecCCcccccchhcccccccccccccccCCCccc
Confidence             0   0 0011234557888777643 22211112   457999997766                   2        26


Q ss_pred             CCCChHHHHHHHHHHHHHHHhCCCC-------------CHHHHHHHHHHHHHHc-CC-CChhhhhHhhcccCeeEEecCC
Q 002861          645 SGLGTSSILAAAVVKALLQITDGDQ-------------SNENVARLVLLLEQLM-GT-GGGWQDQIGGLYPGIKFTSSFP  709 (873)
Q Consensus       645 sGLGSSSAlavA~l~Al~~~~g~~l-------------s~~eL~~la~~~E~~~-g~-~~G~~Dq~~~~~GG~~~~~~~~  709 (873)
                      .|||||||+++|+++||..+++...             +++.|.++|+.+|... |. |+|. |.++++|||+.+.++.+
T Consensus       153 ~GLGSSAAvtVa~v~ALl~~~~~~~~~~~~~~~~~~~~~~~~i~kLA~~ah~~~qGk~GSG~-DvAaavyGgi~Y~rfd~  231 (454)
T TIGR01219       153 TGLGSSAAMTTALVAALLHYLGVVDLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSGF-DVSAAVYGSQRYRRFSP  231 (454)
T ss_pred             cCccHHHHHHHHHHHHHHHHhCCcccccccccccccccCHHHHHHHHHHHHHhhcCCCCCch-hhhhhhcCceEEEecCh
Confidence            9999999999999999999999877             7899999999999854 64 6665 89999999987666543


Q ss_pred             CC-----------------------cceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHH
Q 002861          710 GI-----------------------PLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISS  766 (873)
Q Consensus       710 ~~-----------------------~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~  766 (873)
                      ..                       +...+++++.+|+      +.+++|.+||.+++|..++.+|.+.+...++.....
T Consensus       232 ~~l~~~~~~~~~~~~~~~L~~~v~~~W~~~i~~l~lP~------~l~Llvgdtg~~ssT~~lV~~V~~~~~~~p~~s~~i  305 (454)
T TIGR01219       232 ELISFLQVAITGLPLNEVLGTIVKGKWDNKRTEFSLPP------LMNLFMGDPGGGSSTPSMVGKVKKWQMSDPEESREN  305 (454)
T ss_pred             hhhhhhhccccccchhhhHHHHhccCCCCceeeccCCC------CCEEEEEcCCCCcCcHHHHHHHHHHHHHCHHHHHHH
Confidence            20                       0011345666554      569999999999999999999865544444444444


Q ss_pred             HHHHHHHHHHH---------------------HHHHhcc--------CHHHHHHHHHHHHHHHhhhCC----CCChHHHH
Q 002861          767 IKRLTELAKNG---------------------RDALMNC--------DVDELGKIMLEAWRLHQELDP----HCSNEFVD  813 (873)
Q Consensus       767 ~~~i~~~~~~~---------------------~~AL~~g--------d~~~lg~lm~~~~~~~~~l~~----~vs~p~l~  813 (873)
                      ++.|.+.-..+                     ++.|..+        |+..+.+.+.++.+.++.|..    .+++|++.
T Consensus       306 ~~~l~~aN~~~~~~l~~l~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~i~~~i~~~R~~Lr~~~~~sgv~IEp~~~t  385 (454)
T TIGR01219       306 WQNLSDANLELETKLNDLSKLAKDHWDVYLRVIKVLTSEKCVLHATEELLEAREAMLRIRRLMRQITEEASVDIEPESQT  385 (454)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccchhhhhhhhhccccchhcccccHHHHHHHHHHHHHHHHHhhHhcCCcccCHHHH
Confidence            44444332222                     2234445        788899999999999988875    57899999


Q ss_pred             HHHHHHcc--CCceEEecCCCccceeEEEeCCcch-HHHHHHHHHhcCCCceEEEEEeec
Q 002861          814 RLFAFADP--YCCGYKLVGAGGGGFALLLAKDAES-ATELRRMLEKDSNFNSEVYNWNIY  870 (873)
Q Consensus       814 ~l~~~a~~--ga~G~klsGAGgGG~v~~l~~~~~~-a~~i~~~L~~~~~~~v~v~~~~i~  870 (873)
                      +|++.+.+  |++|++.+|||||+|+++|+.++.+ .+++++.|++.   .|.-..+++.
T Consensus       386 ~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~~~~~~~~~~W~~~---~V~pL~v~~~  442 (454)
T TIGR01219       386 QLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQAWSSH---NVLALDVREA  442 (454)
T ss_pred             HHHHHHhhcCCeeEeecCCCCccceEEEEecCChHHHHHHHHHHhhC---CEEEEecccc
Confidence            99999986  8999999999999999999987545 78888888764   4555555443

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.

>PRK01212 homoserine kinase; Provisional

Probab=99.92  E-value=1.8e-23  Score=229.71  Aligned_cols=287  Identities=19%  Similarity=0.157  Sum_probs=201.7

Q ss_pred             eEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecC-C-c--EEEEeCCCCceeeecCCCCCCC
Q 002861          528 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKM-S-G--VLISDDAGNQLHIEDLTPIATP  603 (873)
Q Consensus       528 ~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~-~-~--i~i~~~~~~~~~~~~l~~l~~p  603 (873)
                      .+++++|+|..++|.++|+           +++||++|.+    +++++.++ . .  +.+.....        .++  |
T Consensus         3 ~~~v~~pat~anlg~gfd~-----------lG~al~~~d~----l~~~~~~~~~~~~~~~~~~~~~--------~~~--p   57 (301)
T PRK01212          3 MVKVRVPATSANLGPGFDS-----------LGLALSLYDE----VLVGDVVSVEAEFSIEVIGEGA--------DKL--P   57 (301)
T ss_pred             eEEEEEecchhhcccChhh-----------hhccccCccE----EEEEEccCCCCceEEEEEecCC--------CcC--C
Confidence            4789999999999999998           8899999987    67766543 1 2  33322110        112  2


Q ss_pred             CCCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 002861          604 FDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ  683 (873)
Q Consensus       604 ~~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~  683 (873)
                      .++.+  +++..++..+.   +......|++|++.++||.|+|||||||+++|++.|++++++.+++.++|+++|.++|.
T Consensus        58 ~~~~~--Nli~~a~~~~~---~~~~~~~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e~  132 (301)
T PRK01212         58 LDPEK--NLVYQAALKFL---EKLGKPPGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGEG  132 (301)
T ss_pred             CCCcc--ccHHHHHHHHH---HHcCCCCCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Confidence            22111  23333333331   12223468999999999999999999999999999999999999999999999999986


Q ss_pred             HcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHH
Q 002861          684 LMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLL  763 (873)
Q Consensus       684 ~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~  763 (873)
                      +      .+|++++++||+.+.....+    ..+++++.++      ++++++++++...+|.++.+.+.+.   .+  .
T Consensus       133 ~------~ddv~~~l~GG~~~~~~g~g----~~~~~~~~~~------~~~~vlv~p~~~~sT~~a~~~l~~~---~~--~  191 (301)
T PRK01212        133 H------PDNVAPALLGGLVLALEENG----VISVKIPVFD------DLKWVVAIPNIELSTAEARAVLPKQ---YS--L  191 (301)
T ss_pred             C------HHHHHHHHhCCEEEEEECCc----eEEEEecCCC------CeEEEEEECCCcCCHHHHHHhCcCc---CC--H
Confidence            2      36888999999998752222    2456665443      4579999999988888876532111   01  0


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeC
Q 002861          764 ISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAK  842 (873)
Q Consensus       764 ~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~  842 (873)
                      .....++.. ...+..+|.++|++.+++.|++.++.....   ...|+++++++.+++ |++|++|||||+  +++++++
T Consensus       192 ~~~~~~~~~-~~~l~~al~~~d~~~~~~~~~~~~~~~~~~---~~~p~~~~i~~~~~~~Ga~g~~~SGsGp--tv~~l~~  265 (301)
T PRK01212        192 KDAVFNSSR-AALLVAALYTGDYELAGRAMKDVLHEPYRA---KLIPGFAEVRQAALEAGALGAGISGAGP--TVFALCD  265 (301)
T ss_pred             HHHHHHHHH-HHHHHHHHhhCCHHHHHHHhchhheHHhHH---hhCCCHHHHHHHHHHCCCeEEEEEchhh--heeEEec
Confidence            112222322 345788999999999999996654322111   124789999999887 899999999986  9999998


Q ss_pred             CcchHHHHHHHHHhcC--CCceEEEEEeeccC
Q 002861          843 DAESATELRRMLEKDS--NFNSEVYNWNIYLE  872 (873)
Q Consensus       843 ~~~~a~~i~~~L~~~~--~~~v~v~~~~i~~~  872 (873)
                      +.+. +++.+.+++..  +...+++..+++.+
T Consensus       266 ~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~  296 (301)
T PRK01212        266 KEDA-EKVADALQKAFLQGIEGFVHVLRLDTA  296 (301)
T ss_pred             cccH-HHHHHHHHHhhccCCCeEEEEeccCCC
Confidence            7555 78888887753  45678888877653

>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase

Probab=99.92  E-value=5.4e-23  Score=224.23  Aligned_cols=268  Identities=17%  Similarity=0.071  Sum_probs=186.7

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND  608 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~  608 (873)
                      ..++|||||||+|+|+|+-+= =.|...++.++|+++++    +++++.++..+.+.+...         ++  |.+  +
T Consensus         2 ~~~~apaKiNL~l~i~~~r~d-GyH~l~sl~~~i~l~d~----v~i~~~~~~~i~~~~~~~---------~~--~~~--~   63 (293)
T TIGR00154         2 HVFPSPAKLNLFLYITGKRPD-GYHELQTLMQFLDLGDK----IIISVRSDDDIRLLKGDF---------DV--PLE--E   63 (293)
T ss_pred             ceEeecccEEEEEecCCcCCC-CCcceEEEEEEeccCcE----EEEEECCCCcEEEeeCCC---------CC--CCC--C
Confidence            356899999999999997210 01455699999999987    677776665566643211         11  111  1


Q ss_pred             hhHHHHHHHHHhhhhhhccc----cccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 002861          609 PFRLVKSALLVTGVIHEKLI----ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL  684 (873)
Q Consensus       609 ~~~~~kaal~~~~~~~~~~~----~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~  684 (873)
                        +++..++..+..   ...    ...|++|++.++||.|+|||||||.++|++.|++++++.++++++++++|..+|. 
T Consensus        64 --nlv~~a~~~l~~---~~~~~~~~~~~~~i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l~~~~l~~la~~lg~-  137 (293)
T TIGR00154        64 --NLIYRAAQLLKN---FANSKIKSLDGANIEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGLSLEELAELGLTLGA-  137 (293)
T ss_pred             --cHHHHHHHHHHH---HhcccccCCCCeEEEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-
Confidence              466666655421   121    2468999999999999999999999999999999999999999999999988852 


Q ss_pred             cCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHH
Q 002861          685 MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLI  764 (873)
Q Consensus       685 ~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~  764 (873)
                              |..++++||..+......     .+.+++.++      +..+++++++...+|+++++.+.  .......  
T Consensus       138 --------Dv~~~~~gg~~~~~g~ge-----~~~~l~~~~------~~~~vl~~p~~~~sT~~~~~~l~--~~~~~~~--  194 (293)
T TIGR00154       138 --------DVPFFVSGHAAFATGVGE-----IITPFEDPP------EKWVVIAKPHVSISTPVVYQAYK--LPRNTPK--  194 (293)
T ss_pred             --------CcceEEECCeEEEEecCc-----EEEECCCCC------CcEEEEEcCCCCcChHHHHHhhh--hcccCcc--
Confidence                    888999999998875432     245554332      45789999999999999987542  1111000  


Q ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCC
Q 002861          765 SSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKD  843 (873)
Q Consensus       765 ~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~  843 (873)
                              ....+..++..++++.+...+.+..+....    -..|+++++++.+++ |+++++|||||+  |+|+++++
T Consensus       195 --------~~~~l~~~~~~~~~~~~~~~~~ndle~~~~----~~~p~l~~i~~~l~~~Ga~~a~mSGSG~--tvf~l~~~  260 (293)
T TIGR00154       195 --------RAKEWLKKISLECLQLLDSNGLNDLEKVAL----KRHTEVAQALNWLLEYGLAPERLSGSGA--CVFALFDM  260 (293)
T ss_pred             --------hhHHHHHHHhhccHHHHhhhhcCccHHHHH----hcCHHHHHHHHHHHhCCCCeEEEecccc--ceEEEeCC
Confidence                    011234445455555443332222221111    246999999999987 899999999976  99999998


Q ss_pred             cchHHHHHHHHHhc
Q 002861          844 AESATELRRMLEKD  857 (873)
Q Consensus       844 ~~~a~~i~~~L~~~  857 (873)
                      .+.++++.+.+++.
T Consensus       261 ~~~a~~~~~~~~~~  274 (293)
T TIGR00154       261 ESEAEQVLEQAPEW  274 (293)
T ss_pred             HHHHHHHHHHhHHH
Confidence            66678888777643

Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.

>PTZ00299 homoserine kinase; Provisional

Probab=99.91  E-value=4e-23  Score=227.24  Aligned_cols=286  Identities=16%  Similarity=0.158  Sum_probs=197.2

Q ss_pred             CCeEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCC
Q 002861          526 PRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFD  605 (873)
Q Consensus       526 ~~~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~  605 (873)
                      +..+++++|+...++|.++|.           +++|+++|.+    +++++.+...+.+.....        ..+  |.+
T Consensus         5 ~~~~~v~vPATsANlGpGFDs-----------LGlAL~lyd~----v~v~~~~~~~i~i~G~~~--------~~l--p~~   59 (336)
T PTZ00299          5 PKKVVLRVPATTANIGPAYDT-----------LGMALSIFME----LTVEHADAFSMTVEGEGS--------EHI--STD   59 (336)
T ss_pred             CceEEEEEecccccccccHHH-----------HhhhcccCcE----EEEEECCCCEEEEecCCc--------CCC--CCC
Confidence            446999999999999999998           8999999987    778775443344432111        011  222


Q ss_pred             CCChhHHHHHHHHHhhhhhhccc--cccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHH
Q 002861          606 HNDPFRLVKSALLVTGVIHEKLI--ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQS---NENVARLVLL  680 (873)
Q Consensus       606 ~~~~~~~~kaal~~~~~~~~~~~--~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls---~~eL~~la~~  680 (873)
                      +.+  .+++++...+.    ...  ...|++|+++++||.++|||||||.++|++.++++++|.+++   .++|+++|..
T Consensus        60 ~~n--lv~~a~~~~~~----~~~~~~~~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~  133 (336)
T PTZ00299         60 EDN--MVVQACRLAFE----EYAHKSMPPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAK  133 (336)
T ss_pred             cch--HHHHHHHHHHH----HhcCCCCCceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHh
Confidence            111  13344433322    111  125899999999999999999999999999999999999995   7999999999


Q ss_pred             HHHHcCCCChhhhhHhhcccCeeEEecCC-CCcceeEEEeecCChhhhhhcCcEEEEEEeCC-----cchHHHHHHHHHH
Q 002861          681 LEQLMGTGGGWQDQIGGLYPGIKFTSSFP-GIPLRLQVIPLLASPQLILELQQRLLVVFTGQ-----VRLAHQVLQKVVT  754 (873)
Q Consensus       681 ~E~~~g~~~G~~Dq~~~~~GG~~~~~~~~-~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~-----tr~t~~~l~~v~~  754 (873)
                      +|.      +.||++++++||+.+....+ +   +....+++.++      ++.++++.++.     |..+++++++.+.
T Consensus       134 ~EG------HpDNVapal~GG~~~~~~~~~g---e~~~~~i~~~~------~~~~vv~iP~~~~~~sT~~aR~vLP~~v~  198 (336)
T PTZ00299        134 FEG------HPDNAAPAIYGGIQLVYKKDNG---RFLTYRVPTPP------NLSVVLFVPHNKMKANTHVTRNLIPTSVS  198 (336)
T ss_pred             hcC------CcccHHHHHhCCEEEEEecCCC---ceEEEecCCCC------CeEEEEEECCCCccccHHHHHhhCcccCc
Confidence            985      34779999999998876433 3   22344565543      45788888864     3334444443322


Q ss_pred             HHhhcCHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH-HHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCC
Q 002861          755 RYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLE-AWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAG  832 (873)
Q Consensus       755 ~~~~~~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~-~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAG  832 (873)
                      .        .+...++... ..+..+|.++|++.+.. +.+ .|+..+..   -..|.++++.+.+.+ |++|+.|||||
T Consensus       199 ~--------~dav~n~~~~-~~lv~al~~~d~~ll~~-~~D~lhep~R~~---~liP~~~~v~~~~~~~Ga~g~~lSGSG  265 (336)
T PTZ00299        199 L--------EDAVFNISRT-SILVLALSTGDLRMLKS-CSDKLHEQQRSD---ALFPHFRPCVKAAREAGAHYAFLSGAG  265 (336)
T ss_pred             H--------HHHHHhhhHH-HHHHHHHHhCCHHHHHh-chhcccCccccc---ccCccHHHHHHHHHHCCCeEEEEEchh
Confidence            1        1222333222 24788999999999865 443 34322211   135899999999976 99999999999


Q ss_pred             ccceeEEEeCC-----------cchHHHHHHHHHhc---CCCceEEEEEeeccC
Q 002861          833 GGGFALLLAKD-----------AESATELRRMLEKD---SNFNSEVYNWNIYLE  872 (873)
Q Consensus       833 gGG~v~~l~~~-----------~~~a~~i~~~L~~~---~~~~v~v~~~~i~~~  872 (873)
                      +  ++++|+++           ++.++++.+++++.   .+...+++..+++.+
T Consensus       266 P--Tv~al~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  317 (336)
T PTZ00299        266 P--SVCALVGGRHGDPLTQPREERKAESVAEAMIKAAEAVGVAGRVIITQPSDQ  317 (336)
T ss_pred             h--hheEEeccccccccccccchhHHHHHHHHHHHHHHHcCCceEEEEccCCCC
Confidence            9  99999982           34567888888773   346778888888753

>TIGR00191 thrB homoserine kinase

Probab=99.91  E-value=7.2e-23  Score=224.78  Aligned_cols=286  Identities=17%  Similarity=0.146  Sum_probs=189.9

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEE----ecCC-cEEEEeCCCCceeeecCCCCCCC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIET----TKMS-GVLISDDAGNQLHIEDLTPIATP  603 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~----~~~~-~i~i~~~~~~~~~~~~l~~l~~p  603 (873)
                      +++++|+...++|.++|+           +++|+++|.+    ++++.    .+.. .+.+.....        ..+  |
T Consensus         1 ~~v~vpatsaNlg~GfD~-----------lg~al~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--------~~~--p   55 (302)
T TIGR00191         1 FRVKVPASSANLGPGFDV-----------LGAALSLYLG----LTVTDVVAQESDDTEIEAEGEGV--------EKI--P   55 (302)
T ss_pred             CEEEEecchhccccChhh-----------hhhhccccce----EEEEeeecccCCCceEEEEeccc--------ccC--C
Confidence            367999999999999998           8999999987    55553    2221 233332110        112  2


Q ss_pred             CCCCChhHHHHHHHHHhhhhhhccccc-cCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 002861          604 FDHNDPFRLVKSALLVTGVIHEKLIES-MGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLE  682 (873)
Q Consensus       604 ~~~~~~~~~~kaal~~~~~~~~~~~~~-~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E  682 (873)
                      .++.  .|++..++..+.   +..... .|++|++.++||.|+|||||||+++|++.|++++++.+++.++|+++|.++|
T Consensus        56 ~~~~--~Nlv~~a~~~~~---~~~g~~~~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E  130 (302)
T TIGR00191        56 TEPT--DNLIYQVAKRFL---DQLGIRMPPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELE  130 (302)
T ss_pred             CCcc--cccHHHHHHHHH---HHcCCCCCCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhc
Confidence            2211  224444443331   112223 6899999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHH
Q 002861          683 QLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNL  762 (873)
Q Consensus       683 ~~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~  762 (873)
                      .+      .||++++++||+.+....++.   +...+++.++      ++++++++|+...+|++..+.+.+.+ ..   
T Consensus       131 ~h------~Dnv~~~l~GG~~~~~~~~~~---~~~~~~~~~~------~~~~vl~~p~~~~sT~~a~~~lp~~~-~~---  191 (302)
T TIGR00191       131 GH------PDNVAPALLGGFQLAFVEDDK---LEVLKIPIFS------KLDWVLAIPNIEVSTAEARAVLPKAY-PR---  191 (302)
T ss_pred             CC------cccHHHHhccCEEEEEEcCCc---eEEEEeCCCC------CEEEEEEECCCcccHHHHHHhCcccC-CH---
Confidence            62      466889999999887644331   2222332222      46899999999888887754321111 00   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH--HHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEE
Q 002861          763 LISSIKRLTELAKNGRDALMNCDVDELGKIMLEA--WRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALL  839 (873)
Q Consensus       763 ~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~--~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~  839 (873)
                       .+...++...+ .+..+|.+++.+ +++.+.+.  |+..+.    ...|+++++++.+++ |++|+++||||+  ++++
T Consensus       192 -~~~v~~~~~~~-~l~~al~~~~~~-l~~~~~~d~l~e~~~~----~l~p~l~~i~~~~~~~Ga~g~~lSGsGp--tv~a  262 (302)
T TIGR00191       192 -QDLVFNLSHLA-GLVHAIYQKKPD-LGAIMMKDRIHQPYRE----SLIPNLFKIKQAALEKGAYGITISGSGP--TILA  262 (302)
T ss_pred             -HHHHHHHHHHH-HHHHHHHcCCHH-HHHHHcccccchhhHh----hhCCCHHHHHHHHHHCCCeEEEEEchhh--hheE
Confidence             11222232222 356788888765 45554443  222221    236889999998876 999999999996  8999


Q ss_pred             EeCCcchHHHHHHHHHhc--CCCceEEEEEeeccC
Q 002861          840 LAKDAESATELRRMLEKD--SNFNSEVYNWNIYLE  872 (873)
Q Consensus       840 l~~~~~~a~~i~~~L~~~--~~~~v~v~~~~i~~~  872 (873)
                      |+++.+.++.+.+.+++.  .+...+++..+++.+
T Consensus       263 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (302)
T TIGR00191       263 MADEEFAEQKEQDLLEVLHKQGIEGTVHVLDFDND  297 (302)
T ss_pred             EecchhhHHHHHHHHHHHHhcCCCeEEEEcccCCC
Confidence            998765665555555542  234678888887754

P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)

>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=99.89  E-value=8.8e-22  Score=216.11  Aligned_cols=272  Identities=18%  Similarity=0.174  Sum_probs=188.3

Q ss_pred             EEEeceEEEeecccccCCCcccC--CCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 002861          530 KVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN  607 (873)
Q Consensus       530 ~v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~  607 (873)
                      +++||+||||+   .+..+...+  |.-..+.+||++|.+    +++++.+...+.+.....        ..+  |.+. 
T Consensus         2 ~~~a~aKiNl~---L~i~~kr~dgyH~l~s~~~ai~l~d~----v~i~~~~~~~i~~~~~~~--------~~~--~~~~-   63 (300)
T PRK03188          2 TVRAPAKVNLH---LGVGPLRDDGYHELATVFQAVSLYDE----VTVTAADVLSVEVSGEGA--------DQV--PTDE-   63 (300)
T ss_pred             eEeecceEEEe---eccCCcCCCCccchHhhheehhhccE----EEEEECCCcEEEEecCCc--------cCC--CCCC-
Confidence            56899999998   555443322  556789999999998    677765332233321110        011  2111 


Q ss_pred             ChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCC
Q 002861          608 DPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGT  687 (873)
Q Consensus       608 ~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~  687 (873)
                        -+++..++..+.   +......|++|++.|+||.++|||||||+++|++.|+++++|.++++++|+++|.++|     
T Consensus        64 --~nl~~~~~~~~~---~~~~~~~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig-----  133 (300)
T PRK03188         64 --SNLAWRAAELLA---EHVGRAPDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELG-----  133 (300)
T ss_pred             --ccHHHHHHHHHH---HHhCCCCCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC-----
Confidence              224444443331   1122346899999999999999999999999999999999999999999999998875     


Q ss_pred             CChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHH
Q 002861          688 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSI  767 (873)
Q Consensus       688 ~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~  767 (873)
                          .|+.++++||+.+.... +.    .+.++..++      +..++++.++...+|+++++.+.. ....+.     .
T Consensus       134 ----~dv~~~~~GG~~~~~~~-g~----~~~~~~~~~------~~~~~lv~p~~~~sT~~~~~~l~~-~~~~~~-----~  192 (300)
T PRK03188        134 ----SDVPFALLGGTALGTGR-GE----QLAPVLARG------TFHWVLAFADGGLSTPAVFRELDR-LREAGD-----P  192 (300)
T ss_pred             ----CCcchhhcCCeEEEEec-CC----EEEECCCCC------CcEEEEEeCCCCCCHHHHHHhchh-hhcccc-----c
Confidence                28888999999887643 32    345554332      335666667777788887665422 111100     0


Q ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcch
Q 002861          768 KRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAES  846 (873)
Q Consensus       768 ~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~~  846 (873)
                      .. ...+..+..++.++|++.++++|++..+. ..+   -..|+++++++.+++ |++|++|||+|+  ++++++++.+.
T Consensus       193 ~~-~~~~~~~~~al~~~d~~~l~~~~~n~le~-~~~---~~~p~l~~l~~~~~~~Galga~lSGsG~--tv~~l~~~~~~  265 (300)
T PRK03188        193 PR-LGEPDPLLAALRAGDPAQLAPLLGNDLQA-AAL---SLRPSLRRTLRAGEEAGALAGIVSGSGP--TCAFLCADADS  265 (300)
T ss_pred             cc-cccHHHHHHHHHcCCHHHHHHHhhCcCHH-HHH---HhCchHHHHHHHHHHCCCCEEEEEcccc--ceEEEeCCHHH
Confidence            01 12345688999999999999998754322 222   137899999999987 999999999999  68899987677


Q ss_pred             HHHHHHHHHhc
Q 002861          847 ATELRRMLEKD  857 (873)
Q Consensus       847 a~~i~~~L~~~  857 (873)
                      ++++.+.|++.
T Consensus       266 ~~~~~~~l~~~  276 (300)
T PRK03188        266 AVDVAAALSGA  276 (300)
T ss_pred             HHHHHHHHHhc
Confidence            88999999875

>PRK01123 shikimate kinase; Provisional

Probab=99.88  E-value=1.1e-20  Score=205.22  Aligned_cols=272  Identities=18%  Similarity=0.185  Sum_probs=183.6

Q ss_pred             eEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCChhHHHH
Q 002861          535 VRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDPFRLVK  614 (873)
Q Consensus       535 ~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~~~~~~k  614 (873)
                      +|..-.|+.||+|.|+-.|||.+   +|++|.+    +++++.++. +.+..+         ...+  +..   ..+++.
T Consensus         3 ~~~~~~gg~~~~~~~~~~~g~~~---~i~l~~~----v~v~~~~~~-~~~~~~---------~~~~--~~~---~~~~v~   60 (282)
T PRK01123          3 GRATALGAGTIINAIATGKGSAF---GIDLKTT----ATVELSDDG-GGIEGE---------ISGN--PDA---DTRLIE   60 (282)
T ss_pred             ceEEecchhhhhhhhhcCcccEE---EeccEEE----EEEEECCCC-ceeeec---------ccCC--CCC---CchHHH
Confidence            67788899999999998898775   8999987    777765442 222211         0111  111   124555


Q ss_pred             HHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcC--CCChhh
Q 002861          615 SALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMG--TGGGWQ  692 (873)
Q Consensus       615 aal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g--~~~G~~  692 (873)
                      .++..+.   +......|++|++.++||.++|||||||+++|++.|++++++.++++++|+++|..+|...+  ..+|.|
T Consensus        61 ~~~~~~~---~~~~~~~~~~i~i~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g~~~  137 (282)
T PRK01123         61 RCVELVL---ERFGIDYGATVRTKSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTGAFD  137 (282)
T ss_pred             HHHHHHH---HHhCCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhccccccccCchh
Confidence            5554432   11222358999999999999999999999999999999999999999999999999998543  368889


Q ss_pred             hhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 002861          693 DQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTE  772 (873)
Q Consensus       693 Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~  772 (873)
                      |+++++|||+.+......    ..+.+++.        ++.++++.|+.+..|.+.-+..              +..+..
T Consensus       138 d~~~~~~GG~~~~~~~~~----~~~~~~~~--------~~~~vv~~p~~~~~T~~~r~~~--------------l~~~~~  191 (282)
T PRK01123        138 DACASYFGGVTVTDNREM----KLLKRDEV--------ELDVLVLIPPEGAFSASADVER--------------MKLIAP  191 (282)
T ss_pred             HHHHHHhCCEEEEcCCCc----eEEEEecC--------CcEEEEEECCCCcchhhhhhhh--------------chhcCc
Confidence            999999999987653221    11223321        3578999999887776532221              111222


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHH-hhhCCCCChHHHHHHHHHHccCCceEEecCCCccceeEEEeCCcchHHHHH
Q 002861          773 LAKNGRDALMNCDVDELGKIMLEAWRLH-QELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESATELR  851 (873)
Q Consensus       773 ~~~~~~~AL~~gd~~~lg~lm~~~~~~~-~~l~~~vs~p~l~~l~~~a~~ga~G~klsGAGgGG~v~~l~~~~~~a~~i~  851 (873)
                      ..+.+..+++++|+.   ++|+.++... +.+.  .+.   +.+.+....|++|+++||+|+  |+++|++. +.++++.
T Consensus       192 ~~d~~~~~~~~~~l~---~~~~~~~l~~~~~l~--~~~---~~i~~a~~~Ga~ga~lSGaGp--tv~al~~~-~~~~~v~  260 (282)
T PRK01123        192 YVDMAFELALDGEYF---KAMTLNGLLYSSALG--FPT---EPALEALEAGAVGVGLSGTGP--SYVAIVDE-EDPEEVK  260 (282)
T ss_pred             HHHHHHHHHhhccHH---HHHHhCCchhhhhhC--CCh---HHHHHHHHCCCeEEEEecCCC--eEEEEeCC-CCHHHHH
Confidence            233455556677764   5555542221 2343  232   223333334899999999865  99999985 5688899


Q ss_pred             HHHHhcCCCceEEEEEeeccC
Q 002861          852 RMLEKDSNFNSEVYNWNIYLE  872 (873)
Q Consensus       852 ~~L~~~~~~~v~v~~~~i~~~  872 (873)
                      +.|++.    .+++..+++.+
T Consensus       261 ~~l~~~----~~~~~~~~~~~  277 (282)
T PRK01123        261 EAWEKY----GKVIVTKINNE  277 (282)
T ss_pred             HHHHhC----CEEEEeeecCC
Confidence            999884    56777777643

>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=99.88  E-value=1.7e-20  Score=203.55  Aligned_cols=263  Identities=14%  Similarity=0.132  Sum_probs=179.6

Q ss_pred             EEEEeceEEEeecccccCCCcccC--CCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDH  606 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~  606 (873)
                      +.++||++|||+   .|..+...+  |.-..+...|+++.+    +++++.+...+.+....         ..+  |.++
T Consensus         4 ~~~~apaKiNl~---L~i~~~r~dgyH~l~s~~~~i~l~d~----v~v~~~~~~~~~i~~~~---------~~~--p~~~   65 (280)
T PRK14614          4 LTLKAPAKVNYR---LDVLRRRPDGYHDLRMIMQRVDLCDE----IEIALSDGPGIRVTCGR---------EGV--PDGP   65 (280)
T ss_pred             eEEeecceEEee---eccCCCCCCCcChhheEeEECCCCeE----EEEEECCCCCEEEEeCC---------CCC--CCCC
Confidence            667999999998   666554433  555688899999997    77776543334443210         111  2221


Q ss_pred             CChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcC
Q 002861          607 NDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMG  686 (873)
Q Consensus       607 ~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g  686 (873)
                         .+++..++..+-   +......|++|++.++||.++|||||||.++|++.+++++++.+++++++.+++..+|.   
T Consensus        66 ---~nl~~~a~~~~~---~~~~~~~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~G~---  136 (280)
T PRK14614         66 ---GNIAWRAADALL---DLSGREVGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKLGA---  136 (280)
T ss_pred             ---CcHHHHHHHHHH---HHhCCCCceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC---
Confidence               224433333321   11222458999999999999999999999999999999999999999999999876532   


Q ss_pred             CCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHH
Q 002861          687 TGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISS  766 (873)
Q Consensus       687 ~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~  766 (873)
                            |.+++++||..+....+.     .++++..++      +..+++++|+...+|+++++.+..............
T Consensus       137 ------Dv~~~l~gg~~~~~g~ge-----~~~~l~~~~------~~~ivl~~p~~~~sT~~~~~~~~~~~~~~~~~~~~~  199 (280)
T PRK14614        137 ------DVPFFIFKKTALAEGIGD-----KLTAVEGVP------PLWVVLVNPGLHVSTAWVYQNLRLTSRKDLAIIPRF  199 (280)
T ss_pred             ------CcceeeeCCcEEEEEcCc-----eeEECCCCC------CcEEEEECCCCCCCHHHHHhcccccccCcchhhhhh
Confidence                  888889999988664332     245554332      457999999999999999876532110011111111


Q ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcc
Q 002861          767 IKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE  845 (873)
Q Consensus       767 ~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~  845 (873)
                      +..+.     ...++..+|++.+.            +   -..|+++++++.+++ |++|++|||||+  |+++++++.+
T Consensus       200 ~~~~~-----~~~~~~~ndle~~~------------~---~~~p~l~~i~~~~~~~Galga~lSGSG~--tv~~l~~~~~  257 (280)
T PRK14614        200 FGSVA-----EVCALLSNDLESVT------------I---GRFPVIGEIKEELLAAGARGSLMSGSGS--TVFGLFDDEA  257 (280)
T ss_pred             hhhHH-----HHhhhcccCcHHHH------------H---hcChHHHHHHHHHHhCCCCEEEEecccc--ceEEEeCCHH
Confidence            11111     12345567766542            1   125899999999987 899999999985  9999999866


Q ss_pred             hHHHHHHHHHhc
Q 002861          846 SATELRRMLEKD  857 (873)
Q Consensus       846 ~a~~i~~~L~~~  857 (873)
                      .++++.+.+++.
T Consensus       258 ~~~~~~~~l~~~  269 (280)
T PRK14614        258 AARAAAEELSRE  269 (280)
T ss_pred             HHHHHHHHhhhc
Confidence            688899998885

>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=99.87  E-value=3.2e-20  Score=202.70  Aligned_cols=278  Identities=13%  Similarity=0.048  Sum_probs=182.5

Q ss_pred             CCeEEEEeceEEEeecccccCCCcccC--CCCeEEEeeee-cccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCC
Q 002861          526 PRTVKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAIS-LESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIAT  602 (873)
Q Consensus       526 ~~~v~v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~-l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~  602 (873)
                      .+.++++||+||||.   .|..+..-+  |.-.++.++|+ ++++    +++++.+...+.+.....         .+  
T Consensus         4 ~~~~~~~apaKINL~---L~v~~kr~DGyH~l~sl~~~i~~~~D~----l~i~~~~~~~i~~~~~~~---------~~--   65 (296)
T PRK14615          4 NDAVTLRSGCKVNLD---LRITGVRPDGYHEIDSLFLPLPEPHDE----LHVRVTDAPGITVTCTIP---------DL--   65 (296)
T ss_pred             CCeEEEEecceEEec---cccCCcCCCCCcceEEEEEECCCCCcE----EEEEECCCCCEEEEECCC---------CC--
Confidence            456889999999998   444433222  56689999998 5776    778776554565543211         11  


Q ss_pred             CCCCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 002861          603 PFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLE  682 (873)
Q Consensus       603 p~~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E  682 (873)
                      +. .   -|++..++..+.   +......|++|++.++||.++||||||+.++|++.+++++++.+++.+++++++..+|
T Consensus        66 ~~-~---~Nlv~~a~~~~~---~~~~~~~~~~i~i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l~~~~l~~~a~~~g  138 (296)
T PRK14615         66 DP-E---RNTVTRAYTAFA---AATGFRPPLEVHLRKGIPHGAGLGGGSADAAALLRHLNSIAPHPLSPEALAKLAAGVG  138 (296)
T ss_pred             CC-C---ccHHHHHHHHHH---HHhCCCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC
Confidence            11 1   123333333321   1122236899999999999999999999999999999999999999999999998876


Q ss_pred             HHcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHH
Q 002861          683 QLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNL  762 (873)
Q Consensus       683 ~~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~  762 (873)
                      .         |+.++++||..+......     .++|++++.     .+..++|++|+..-+|+++++.+..........
T Consensus       139 a---------DvPffl~gg~a~~~G~Ge-----~~~~l~~~~-----~~~~~vl~~P~~~vsT~~a~~~~~~~~~~~~~~  199 (296)
T PRK14615        139 A---------DVPFFLHNVPCRATGIGE-----ILTPVALGL-----SGWTLVLVCPEVQVSTPWAYAAWDAANAKQIAA  199 (296)
T ss_pred             C---------CCeeeccCCCEEEEeeEe-----EEEECCCCC-----CCcEEEEECCCCCcChHHHHHHhhhhccccccc
Confidence            4         777777898887654322     456765321     145789999999999999876532211100000


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCHHHHHHH--HHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEE
Q 002861          763 LISSIKRLTELAKNGRDALMNCDVDELGKI--MLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALL  839 (873)
Q Consensus       763 ~~~~~~~i~~~~~~~~~AL~~gd~~~lg~l--m~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~  839 (873)
                      .   ...... ...+......+|...+++.  +.+..+..+ +   -..|+++++++.+.+ |++|++|||||+  |+|+
T Consensus       200 ~---~~~~~~-~~~~l~~~~~~~~~~~~~~~~l~ndle~~~-~---~l~P~l~~~~~~~~~~GAlga~mSGSGp--tvfa  269 (296)
T PRK14615        200 S---SRKQNR-LRGCLTTEGVADRNPLSRGLWLHNSFEPVV-F---AAHPELRRLKETLLRHGAAAALMSGSGS--SVFG  269 (296)
T ss_pred             c---cccccc-hHHHHHhhhccchhhhhhhhhccccchhHh-H---HhChHHHHHHHHHHhcCCCEEEEeccCc--ceEE
Confidence            0   000000 0112233333444333222  222222111 1   146899999999977 999999999997  9999


Q ss_pred             EeCCcchHHHHHHHHHhc
Q 002861          840 LAKDAESATELRRMLEKD  857 (873)
Q Consensus       840 l~~~~~~a~~i~~~L~~~  857 (873)
                      |+++.+.++++.+.+++.
T Consensus       270 L~~~~~~a~~i~~~l~~~  287 (296)
T PRK14615        270 LFRRRAQAEAAFEMLKGH  287 (296)
T ss_pred             EeCCHHHHHHHHHHHhhh
Confidence            999878889999999885

>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=99.86  E-value=1.2e-19  Score=197.84  Aligned_cols=265  Identities=15%  Similarity=0.087  Sum_probs=177.3

Q ss_pred             eEEEEeceEEEeecccccCCCcccC--CCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCC
Q 002861          528 TVKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFD  605 (873)
Q Consensus       528 ~v~v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~  605 (873)
                      .+.++||+||||.   .+..+..-+  |.-..+...|+++++    +++++.++..+.+.....        ..+  |.+
T Consensus         6 ~~~~~a~aKiNL~---L~i~~kr~dGyH~l~s~~~~i~l~D~----l~i~~~~~~~i~~~~~~~--------~~i--p~~   68 (290)
T PRK14608          6 SLTEFAPAKINLA---LHVTGRRADGYHLLESLVAFADVGDR----LTLEPAEALSLTVSGPFA--------AGL--GDG   68 (290)
T ss_pred             eEEEEeceeEEee---eccCCCCCCCCcceeEEEEECCCCcE----EEEEECCCCcEEEeCCCc--------cCC--CCC
Confidence            4678999999998   343332211  566789999999997    677765444455543211        011  222


Q ss_pred             CCChhHHHHHHHHHhhhhhhccc-cccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 002861          606 HNDPFRLVKSALLVTGVIHEKLI-ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL  684 (873)
Q Consensus       606 ~~~~~~~~kaal~~~~~~~~~~~-~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~  684 (873)
                         .-|++..|+..+.   +... ...|++|++.++||.|+|||||||.++|++.+++++++.++++++++++|..+|. 
T Consensus        69 ---~~Nlv~ka~~~~~---~~~g~~~~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~ig~-  141 (290)
T PRK14608         69 ---DDNLVLRAARALR---ARVGPGLPPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSLGA-  141 (290)
T ss_pred             ---CCcHHHHHHHHHH---HHhCCCCCceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-
Confidence               2235544444432   1221 3468999999999999999999999999999999999999999999999998742 


Q ss_pred             cCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCH-HH
Q 002861          685 MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDN-LL  763 (873)
Q Consensus       685 ~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~-~~  763 (873)
                              |+.++++||..+.... |.    .+++++..+      +..++|++++...+|.++.+.+ +.....+. ..
T Consensus       142 --------dv~~~l~gg~~~~~g~-g~----~~~~l~~~~------~~~~vv~~p~~~~sT~~~~~~l-~~~~~~~~~~~  201 (290)
T PRK14608        142 --------DVPVCLDSRPLIMRGI-GE----ELTPLPGLP------SLPAVLVNPGVPVATPDVFRAL-GLRDGPPLPGA  201 (290)
T ss_pred             --------CcchhhcCCeEEEEec-CC----EeEECCCCC------CcEEEEECCCCCcChHHHHHhh-ccccCCcchhh
Confidence                    8999999999887653 32    345654322      4579999999999999888653 21110010 00


Q ss_pred             HHHHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc--CCceEEecCCCccceeEE
Q 002861          764 ISSIKRLTELAKNGRDALM--NCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP--YCCGYKLVGAGGGGFALL  839 (873)
Q Consensus       764 ~~~~~~i~~~~~~~~~AL~--~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~--ga~G~klsGAGgGG~v~~  839 (873)
                      ...+.+.    ..+..++.  .+|++...          ..     ..|+++++.+.+.+  |++|++|||||+  ++++
T Consensus       202 ~~~~~~~----~~l~~~~~~~~ndle~~~----------~~-----l~p~l~~i~~~~~~~~Ga~~~~lSGSGs--tvf~  260 (290)
T PRK14608        202 PDPLASA----DALLAALAATRNDLEPPA----------LA-----LAPVIGEVLAALRAQPGALLARMSGSGA--TCFA  260 (290)
T ss_pred             hhhhhhh----hhHHHHHHhccCccHHHH----------HH-----cCcHHHHHHHHHHhcCCCCeeEEecccc--CeEE
Confidence            1111111    11222222  22332111          12     35899999998864  899999999998  9999


Q ss_pred             EeCCcchHHHHHHHHHhc
Q 002861          840 LAKDAESATELRRMLEKD  857 (873)
Q Consensus       840 l~~~~~~a~~i~~~L~~~  857 (873)
                      ++++.+.++++.+.+++.
T Consensus       261 l~~~~~~a~~~~~~l~~~  278 (290)
T PRK14608        261 LFADEAAAEAAAAAIAAA  278 (290)
T ss_pred             EeCCHHHHHHHHHHhHhh
Confidence            999867788999999864

>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=99.86  E-value=6.4e-20  Score=199.97  Aligned_cols=266  Identities=17%  Similarity=0.124  Sum_probs=179.7

Q ss_pred             eEEEEeceEEEeecccccCCCcccC--CCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCC
Q 002861          528 TVKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFD  605 (873)
Q Consensus       528 ~v~v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~  605 (873)
                      ++.++||+||||.   .+..+..-+  |.-..+.++|+++.+    +++++.+  .+.+....         .++  |.+
T Consensus         3 ~~~~~a~aKiNL~---L~i~~~r~dgyH~l~si~~~i~l~d~----v~v~~~~--~~~i~~~~---------~~~--p~~   62 (287)
T PRK14616          3 HISVKAFAKINLG---LLITGKRPDGYHTLETIFAPINWYDT----LTFSPSD--TISMSCTN---------LDL--PVD   62 (287)
T ss_pred             ceEEeeceeEEee---eecCCCCCCCccceeEEEEEcCCCCE----EEEEECC--CEEEEeCC---------CCC--CCC
Confidence            4778999999998   444322211  455788899999987    6776643  24443211         011  221


Q ss_pred             CCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHc
Q 002861          606 HNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM  685 (873)
Q Consensus       606 ~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~  685 (873)
                         ..+++..++..+.   +......|++|++.++||.++|||||||.++|++.++++++|.+++.++++++|..+|.  
T Consensus        63 ---~~nl~~~a~~~~~---~~~~~~~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig~--  134 (287)
T PRK14616         63 ---DSNLCIRAAKALQ---EYAGVSKGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLGA--  134 (287)
T ss_pred             ---ccHHHHHHHHHHH---HHhCCCCCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC--
Confidence               1234433333321   11223468999999999999999999999999999999999999999999999999864  


Q ss_pred             CCCChhhhhHhhc-ccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHH
Q 002861          686 GTGGGWQDQIGGL-YPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLI  764 (873)
Q Consensus       686 g~~~G~~Dq~~~~-~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~  764 (873)
                             |..+++ +||+.+.... |.    .++++..+.      ..++++++|+...+|+++.+.+.+....+     
T Consensus       135 -------Dvp~~l~~gg~~~~~g~-g~----~~~~~~~~~------~~~~vvv~P~~~vsT~~a~~~l~~~~~~~-----  191 (287)
T PRK14616        135 -------DVPYFLEMKGLAYATGI-GD----ELEDLQLTL------PFHIVTVFPEEHISTVWAYKNFYRRFERE-----  191 (287)
T ss_pred             -------CcceEeccCCcEEEEEc-Cc----eeEECCcCC------CcEEEEECCCCCcCHHHHHHHhhhhcccC-----
Confidence                   554444 5888766543 32    244544322      35789999999999998876542222111     


Q ss_pred             HHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeC
Q 002861          765 SSIKRLTELAKNGRDALM-NCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAK  842 (873)
Q Consensus       765 ~~~~~i~~~~~~~~~AL~-~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~  842 (873)
                        ..++    ..+..++. .++++.++.+.++-......+     .|+++++.+.+++ |++|+.|||||+  ++++|++
T Consensus       192 --~~~~----~~l~~~l~~~~~~~l~~~~~nD~e~~~~~l-----~p~l~~v~~~~~~~Galg~~lSGSGp--tv~al~~  258 (287)
T PRK14616        192 --RPDL----KTLVRRLCLDGDTSVLPAFENDFESAVFDH-----YPAVRKVKDDLLEAGSFFASLSGSGS--AVFGLFE  258 (287)
T ss_pred             --CchH----HHHHHHHhcCCHHHHHHHhcCccHHHHHHh-----ChHHHHHHHHHHhCCCCeEEEecccc--cceEEeC
Confidence              1111    12344333 456666666555443333333     4899999998887 999999999999  9999998


Q ss_pred             CcchHHHHHHHHHhc
Q 002861          843 DAESATELRRMLEKD  857 (873)
Q Consensus       843 ~~~~a~~i~~~L~~~  857 (873)
                      +.+.++++.+.+++.
T Consensus       259 ~~~~a~~i~~~l~~~  273 (287)
T PRK14616        259 NEADAEAAAEMMRAR  273 (287)
T ss_pred             CHHHHHHHHHHhHHh
Confidence            767788999999875

>TIGR01920 Shik_kin_archae shikimate kinase

Probab=99.86  E-value=1.9e-19  Score=193.14  Aligned_cols=234  Identities=20%  Similarity=0.154  Sum_probs=162.3

Q ss_pred             EEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCChhHHHHHHHHHhhhhhhccccccCEEEEE
Q 002861          558 LNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRT  637 (873)
Q Consensus       558 l~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i  637 (873)
                      ..++|+++.+    +++++.++..+.+.+.           .        . .+++..++..+.   +.+....|++|++
T Consensus        17 ~a~aI~~~~~----v~v~~~~~~~~~~~~~-----------~--------~-~n~i~~~~~~~~---~~~~~~~g~~i~i   69 (261)
T TIGR01920        17 GAFGIDLWVE----AKVREGDEAGVSTYVR-----------G--------N-PRLIERILTAIR---SKFGIVDGLEVEV   69 (261)
T ss_pred             eEEEccCceE----EEEEECCCCceeeeec-----------C--------C-hHHHHHHHHHHH---HhcCCCCCEEEEE
Confidence            4567777765    7777765443332211           0        0 145555555442   1223346899999


Q ss_pred             eeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcC--CCChhhhhHhhcccCeeEEecCCCCccee
Q 002861          638 WANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMG--TGGGWQDQIGGLYPGIKFTSSFPGIPLRL  715 (873)
Q Consensus       638 ~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g--~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~  715 (873)
                      .++||.++|||||||+++|++.|++++++.+++++++++++.++|...+  ..+|.||++++++||+.+.+..+.   + 
T Consensus        70 ~s~iP~~~GLGSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~gG~~~~~~~~~---~-  145 (261)
T TIGR01920        70 ESEIPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTGAFDDAAASYLGGIVITDNRRM---K-  145 (261)
T ss_pred             ecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhCCEEEEeCCCc---e-
Confidence            9999999999999999999999999999999999999999999998643  568999999999999988764332   1 


Q ss_pred             EEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 002861          716 QVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLE  795 (873)
Q Consensus       716 ~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~  795 (873)
                      .+.+++.+       +..++++.++...+|..+-..+              +..+...++++.++++.+|+.   ++|+.
T Consensus       146 ~~~~~~~~-------~~~~vv~~p~~~~tt~~~~~~~--------------l~~~~~~~~~~~~~~~~~~l~---~am~~  201 (261)
T TIGR01920       146 ILKRDKLE-------GCTAAVLVPKEGERRENVDLNR--------------FRRISPVVEEAFNLALRGEYL---KAMVL  201 (261)
T ss_pred             EEEecCCC-------CceEEEEECCCCcccccccHHH--------------hhhcchHHHHHHHHHhhCCHH---HHHhh
Confidence            12233322       2367888887755554321111              222334556677888888876   67888


Q ss_pred             HHHHH-hhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhc
Q 002861          796 AWRLH-QELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD  857 (873)
Q Consensus       796 ~~~~~-~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~  857 (873)
                      ++.++ ..+  +++.+    +++.+++ |++|+||||+|+  |+++|+++ .  +++.+.|++.
T Consensus       202 n~~l~~~~l--g~~~~----~i~~a~~~Galga~lSGaG~--sv~aL~~~-~--~~v~~~~~~~  254 (261)
T TIGR01920       202 NGVAYATAL--GYPLE----PASKALEAGAAAAGLSGKGP--SYFALTED-P--EEAAEALMEF  254 (261)
T ss_pred             ChHHhHHhh--CCChH----HHHHHHHcCCcEEeecCCCC--eEEEEeCC-H--HHHHHHHHhC
Confidence            87655 334  35444    4455655 999999999855  99999985 2  6788888875

This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.

>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=99.85  E-value=1.1e-19  Score=196.96  Aligned_cols=268  Identities=15%  Similarity=0.115  Sum_probs=182.0

Q ss_pred             EEEeceEEEeecccccCCCccc--CCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 002861          530 KVELPVRIDFAGGWSDTPPWSL--ERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN  607 (873)
Q Consensus       530 ~v~aP~Rv~L~G~~tD~~~~~~--~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~  607 (873)
                      ..+||+||||+   .+..+..-  .|.-..+..+|+++.+    +++++.+  .+.+..+..         .+  |.   
T Consensus         3 ~~~a~aKiNL~---L~i~~kr~dgyH~l~s~~~ai~l~d~----v~i~~~~--~~~i~~~~~---------~~--~~---   59 (275)
T PRK14611          3 VLLSPAKVNLG---LWILGKRPDGYHEIFTIYHTIDLYDR----IYIKEHH--TLEVKTSSP---------QI--KE---   59 (275)
T ss_pred             eeeecceEEee---eccCcCCCCCcchhhheeEeccCCcE----EEEEECC--cEEEEeCCC---------CC--CC---
Confidence            45899999998   33322211  1455678899999998    6776643  244433210         11  21   


Q ss_pred             ChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCC
Q 002861          608 DPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGT  687 (873)
Q Consensus       608 ~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~  687 (873)
                       +.+++..++..+.   +......|++|++.++||.++|||||||.++|++.|++++++.+++.++|+++|..+|.    
T Consensus        60 -~~n~v~~a~~~~~---~~~g~~~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~~----  131 (275)
T PRK14611         60 -EENIVYKALRLFE---RYTGIDINYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSISA----  131 (275)
T ss_pred             -cccHHHHHHHHHH---HHhCCCCCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC----
Confidence             2346666665542   12223468999999999999999999999999999999999999999999999998864    


Q ss_pred             CChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHH
Q 002861          688 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSI  767 (873)
Q Consensus       688 ~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~  767 (873)
                           |...+++||+.+....+.     .+.+++.+.      ...+++++++...+|+++.+.+.+.+...       .
T Consensus       132 -----D~~~~~~Gg~~~~~~~g~-----~~~~~~~~~------~~~~vv~~p~~~~sT~~~~~~l~~~~~~~-------~  188 (275)
T PRK14611        132 -----DAPFFLKGGFALGRGIGD-----KLEFLEKPI------SREITLVYPNIKSSTGRVYSKVTKQILTN-------K  188 (275)
T ss_pred             -----CCCeeecCCeEEEeccCc-----eeEECCcCC------CcEEEEEeCCCCCChHHHHHhcchhhccC-------c
Confidence                 777788999998765322     344554322      34789999999999999887543222111       1


Q ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHH-HHHHhhhCCCCChHHHHHHHHHHccCCceEEecCCCccceeEEEeCCcch
Q 002861          768 KRLTELAKNGRDALMNCDVDELGKIMLEA-WRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAES  846 (873)
Q Consensus       768 ~~i~~~~~~~~~AL~~gd~~~lg~lm~~~-~~~~~~l~~~vs~p~l~~l~~~a~~ga~G~klsGAGgGG~v~~l~~~~~~  846 (873)
                      .    ....+..++.++|++.++..+.+. ++....     ..|++.++.+....++.++.|||||+  ++++++++.+ 
T Consensus       189 ~----~~~~l~~~l~~~~~~~~~~~~~n~l~~~~~~-----~~P~l~~~~~~l~~~~~~~~~SGSG~--tvf~l~~~~~-  256 (275)
T PRK14611        189 E----DLNIIISLLREGEEKKIEEVIENTLGEIALE-----LYPEIKEVYRFLEYLGYKPFVSGSGS--SVYVFGKPSE-  256 (275)
T ss_pred             c----hHHHHHHHHHcCCHHHHHHhcCCcccHHHHH-----HCHHHHHHHHHHHhCCCCEEEeCccc--cceeEeCCHH-
Confidence            1    123467788899998887765443 332322     24888998888776556899999999  9999997633 


Q ss_pred             HHHHHHHHHhcCCCceEEEEEe
Q 002861          847 ATELRRMLEKDSNFNSEVYNWN  868 (873)
Q Consensus       847 a~~i~~~L~~~~~~~v~v~~~~  868 (873)
                        ++++.+...   .-.+|.++
T Consensus       257 --~~~~~~~~~---~~~~~~~~  273 (275)
T PRK14611        257 --EVKKAAAVR---GWKLIETK  273 (275)
T ss_pred             --HHHHHHhhC---CeEEEEEe
Confidence              344444433   22266654

>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=99.85  E-value=9.1e-20  Score=197.63  Aligned_cols=259  Identities=17%  Similarity=0.119  Sum_probs=176.4

Q ss_pred             EEEEeceEEEeecccccCCCcccC--CCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDH  606 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~  606 (873)
                      +.++||++|||.   .|..+...+  |.=.++.+||+++.+    +++++.++ .+.+.....         .+  |.+.
T Consensus         3 ~~~~a~aKiNl~---L~i~~~~~dgyH~l~sl~~al~l~d~----v~i~~~~~-~~~i~~~~~---------~~--p~~~   63 (276)
T PRK14612          3 MERLAPAKVNLG---LSVLGRREDGYHELHTLMVPLDVGDR----LEVEPIAS-GLELRVLGA---------DL--PTDE   63 (276)
T ss_pred             eEEeeCcEEeec---cccCCCCCCCCceeEEEEEECCCCCE----EEEEECCC-cEEEEcCCC---------CC--CCCC
Confidence            567899999998   777655433  566799999999997    77776543 344432110         11  2221


Q ss_pred             CChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcC
Q 002861          607 NDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMG  686 (873)
Q Consensus       607 ~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g  686 (873)
                      ++ . +.|++.....    ......|++|++.++||.|+|||||||.++|++.+++++++.+++   +.+++..+|    
T Consensus        64 ~N-l-i~ka~~~~~~----~~g~~~~~~I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~l~---l~~ia~~~g----  130 (276)
T PRK14612         64 RN-L-VYRAARAYLD----AAGQPGGVRITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAPVD---LPALALTLG----  130 (276)
T ss_pred             cc-c-HHHHHHHHHH----HhCCCCCeEEEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCChH---HHHHHHHhC----
Confidence            12 1 3344433222    222245899999999999999999999999999999999998775   444444443    


Q ss_pred             CCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHH
Q 002861          687 TGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISS  766 (873)
Q Consensus       687 ~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~  766 (873)
                           .|++++++||+.+....+.     .+.|++.+       ++.++|++++...+|+++.+.+....  .+..    
T Consensus       131 -----~dv~~~~~GG~~~~~g~g~-----~~~~l~~~-------~~~~vv~~P~~~~sT~~a~~~l~~~~--~~~~----  187 (276)
T PRK14612        131 -----ADVPFFLLGGAAEARGVGE-----RLTPLELP-------PVPLVLVNPGVAVSARDAYRWLEPED--FGPE----  187 (276)
T ss_pred             -----CCcCeeeeCCeEEEEecCc-----cceEcCCC-------CcEEEEECCCCCCCHHHHHHhhcccc--CCCc----
Confidence                 2899999999998875322     35566432       45799999999999998886531110  0100    


Q ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcc
Q 002861          767 IKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE  845 (873)
Q Consensus       767 ~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~  845 (873)
                           ..+..+..+|.++|...+...|.   ....     ...|+++++++.+++ |++|++|||||+  ++++++++.+
T Consensus       188 -----~~~~~l~~~l~~~d~~~~~n~l~---~~~~-----~~~p~l~~i~~~l~~~Ga~~~~lSGsGp--tvfal~~~~~  252 (276)
T PRK14612        188 -----LDVEAILAALARGEEPPYWNSLE---GPVF-----ARHPELQEVLAALRAAGLRGVLMSGSGS--TCFGLAEDAA  252 (276)
T ss_pred             -----ccHHHHHHHHHhcccccccCCcH---HHHH-----HhChHHHHHHHHHHhCCCCEEEEcCcch--hhEEEeCCHH
Confidence                 01334566777776433222221   1111     346899999999987 999999999998  9999998867


Q ss_pred             hHHHHHHHHHhc
Q 002861          846 SATELRRMLEKD  857 (873)
Q Consensus       846 ~a~~i~~~L~~~  857 (873)
                      .++++.+.+++.
T Consensus       253 ~a~~~~~~l~~~  264 (276)
T PRK14612        253 QAQRAAAALRAR  264 (276)
T ss_pred             HHHHHHHHhHhh
Confidence            788899999875

>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=99.84  E-value=4.9e-19  Score=193.29  Aligned_cols=279  Identities=15%  Similarity=0.060  Sum_probs=178.7

Q ss_pred             EeceEEEeecccccCCCcccC--CCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCc-eeeecCCCCCCCCCCCC
Q 002861          532 ELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQ-LHIEDLTPIATPFDHND  608 (873)
Q Consensus       532 ~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~-~~~~~l~~l~~p~~~~~  608 (873)
                      +||+||||.   .|..+..-+  |.-..+...|+++++    +++++.+...+.+.+..... ....-.+++....+.. 
T Consensus         2 ~apAKINL~---L~I~gkr~dGyH~l~s~~~~i~l~D~----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   73 (297)
T PRK14613          2 ISPAKINLG---LEIPFKREDGFHEIRSVFLKISWGDD----IEIEPAPNGVFELFSTNEIILEKRKLYDQVSERGDIK-   73 (297)
T ss_pred             CCCceEeee---ecCCCcCCCCcceeeeEEEEeccCCE----EEEEECCCCcEEEEecccccccccccccccCCCCCcc-
Confidence            589999998   444332221  566789999999998    67776544446555321100 0000000111000111 


Q ss_pred             hhHHH-HHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCC
Q 002861          609 PFRLV-KSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGT  687 (873)
Q Consensus       609 ~~~~~-kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~  687 (873)
                       -|++ |++.....    ......|++|++.++||.++|||||||.+++++.+++..++. ...+++.++|..+|.    
T Consensus        74 -~Nlv~ka~~~~~~----~~~~~~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~l-~~~e~L~~lA~~lGa----  143 (297)
T PRK14613         74 -QNILYKTFIKARS----LFPELPGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRNF-FTSDEMQVFAKEIGS----  143 (297)
T ss_pred             -cchHHHHHHHHHH----HhCCCCCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHhCC----
Confidence             2344 44433322    223346899999999999999999999999999998886554 234677779988842    


Q ss_pred             CChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHH
Q 002861          688 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSI  767 (873)
Q Consensus       688 ~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~  767 (873)
                           |..+++.||..+.... |.    .++|++.++       ..+++++++...+|+++.+.+.+.+......     
T Consensus       144 -----DvP~~l~G~~a~~~g~-Ge----~~~~l~~~~-------~~~vlv~P~~~vsT~~a~~~l~~~~~~~~~~-----  201 (297)
T PRK14613        144 -----DVPFFLGEGHAFVTGK-GE----IMEEIEVHK-------GQGILALTPQVMNTGEMYALLKKPLQESASQ-----  201 (297)
T ss_pred             -----ccchhhcCCeEEEecC-Cc----EEEEcCCCC-------CeEEEEECCCCcChHHHHHhcchhhcccccc-----
Confidence                 8777777776555433 32    355665432       2357888999999998886542222111100     


Q ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHH-HHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcc
Q 002861          768 KRLTELAKNGRDALMNCDVDELGKIM-LEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE  845 (873)
Q Consensus       768 ~~i~~~~~~~~~AL~~gd~~~lg~lm-~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~  845 (873)
                      ......+..+..++.++|++.+...+ |+.......+     .|+++++.+.+.+ |+++++|||||+  ++|+++++.+
T Consensus       202 ~~~~~~~~~~~~al~~~~~~~l~~~l~ndle~~~~~l-----~P~~~~i~~~~~~~Ga~~~~mSGSGp--tvf~l~~~~~  274 (297)
T PRK14613        202 KNGNTLSEDLISSLKVGDWVSLQGRLENDFEPVAFQL-----HPELGVLKDKFLEFGSSYCSLTGSGS--SMYGLVQGLE  274 (297)
T ss_pred             ccccccHHHHHHHHHcCCHHHHHHHhcccchHHHHHh-----CcHHHHHHHHHHHcCCCEEEEEcccc--ceEEEeCCHH
Confidence            01111234577888999999886654 5543344444     4899999998876 899999999987  9999999877


Q ss_pred             hHHHHHHHHHhc
Q 002861          846 SATELRRMLEKD  857 (873)
Q Consensus       846 ~a~~i~~~L~~~  857 (873)
                      .++++.+.+++.
T Consensus       275 ~a~~~~~~l~~~  286 (297)
T PRK14613        275 IQEELLPRLRQE  286 (297)
T ss_pred             HHHHHHHHHHHh
Confidence            888999999875

>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=99.82  E-value=6.1e-19  Score=189.88  Aligned_cols=252  Identities=14%  Similarity=0.070  Sum_probs=164.0

Q ss_pred             EEEeceEEEeecccccCCCcccC--CCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 002861          530 KVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN  607 (873)
Q Consensus       530 ~v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~  607 (873)
                      ..+||+||||.   .+..+..-+  |.-..+...|+++++    +++++.++..+.+.....         .+  |.+  
T Consensus         2 ~~~apaKiNL~---L~v~~~r~dGyH~l~s~~~~i~l~D~----l~i~~~~~~~~~~~~~~~---------~~--~~~--   61 (269)
T PRK14609          2 ITFPNAKINLG---LNVVEKRPDGYHNLETVFYPIPLTDA----LEITVRSATKTSLTVSGI---------PI--PGD--   61 (269)
T ss_pred             CcCccccEEee---eccCCcCCCCcceeeEEEEECCCCcE----EEEEEcCCCcEEEEeCCC---------CC--CCC--
Confidence            35799999998   333322111  455789999999997    666655444455543211         11  211  


Q ss_pred             ChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCC
Q 002861          608 DPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGT  687 (873)
Q Consensus       608 ~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~  687 (873)
                      .+-|++..++..+..   ... ..|++|++.++||.|+|||||||.++|++.+++++++.+++.++++++|..++     
T Consensus        62 ~~~Nlv~~a~~~~~~---~~~-~~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~iG-----  132 (269)
T PRK14609         62 PEDNLVVKAYNLLKK---DFP-LPPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATLG-----  132 (269)
T ss_pred             ccccHHHHHHHHHHH---HcC-CCCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC-----
Confidence            123455555544321   122 25899999999999999999999999999999999999999999999998773     


Q ss_pred             CChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHH
Q 002861          688 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSI  767 (873)
Q Consensus       688 ~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~  767 (873)
                          .|...+++||..+....+.     .+.+++.+.     .+.++++++++...+|+++++.+.+.   .+..   .+
T Consensus       133 ----aDvpffl~g~~a~~~G~Ge-----~l~~l~~~~-----~~~~~vlv~P~~~~sT~~a~~~l~~~---~~~~---~~  192 (269)
T PRK14609        133 ----ADCAFFIRNKPVYATGIGD-----IFSPIDLSL-----SGYYIALVKPDIHVSTAEAYAGIKPH---KPET---SL  192 (269)
T ss_pred             ----CCceEEccCCCEEEEEeCC-----eeEECCCCC-----CCCEEEEECCCCCCChHHHHHhhhhc---Ccch---hh
Confidence                2888888898887765432     356664321     14579999999999999998754221   1100   00


Q ss_pred             HHHHH-HHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcc
Q 002861          768 KRLTE-LAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE  845 (873)
Q Consensus       768 ~~i~~-~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~  845 (873)
                      ..+.. ...++...+ .+|++.             .+.  ...|+++++++.+++ |+++++|||||+  ++++++++.+
T Consensus       193 ~~~~~~~~~~~~~~l-~Ndle~-------------~~~--~~~p~l~~i~~~l~~~ga~~~~mSGSG~--tvf~l~~~~~  254 (269)
T PRK14609        193 KEIIRQPVEEWKNKL-VNDFED-------------SVF--PKYPEIAEIKEKLYRSGALYAAMSGSGS--SVFGIFKKPP  254 (269)
T ss_pred             HHHHhhHHHHHHhhc-CCChHH-------------HHH--HcChHHHHHHHHHHhCCCCeEEEeCccc--eeEEEECChH
Confidence            00000 000011111 122221             121  246899999998887 899999999986  9999998754


Q ss_pred             hHH
Q 002861          846 SAT  848 (873)
Q Consensus       846 ~a~  848 (873)
                      +.+
T Consensus       255 ~~~  257 (269)
T PRK14609        255 NLD  257 (269)
T ss_pred             HcC
Confidence            443

>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=99.82  E-value=3.6e-18  Score=184.14  Aligned_cols=253  Identities=15%  Similarity=0.109  Sum_probs=173.4

Q ss_pred             EEEEeceEEEeecccccCCCcccC--CCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDH  606 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~  606 (873)
                      +.++||+||||++ |  ..+..-+  |.-..+.++|+++++    +++++.++..+.+.+..         .++  +   
T Consensus         7 ~~~~apaKiNL~L-~--v~~~r~dGyH~l~s~~~~i~l~D~----v~i~~~~~~~~~i~~~~---------~~~--~---   65 (271)
T PRK00343          7 LDWPAPAKLNLFL-H--ITGRRADGYHELQTLFQFLDWGDT----LHFEVRDDGEIRLLTPI---------PGV--P---   65 (271)
T ss_pred             EEEeeeeeEEEEe-e--cCCcCCCCCCeeeEEEEEcccceE----EEEEECCCCcEEEeCCC---------CCC--C---
Confidence            6679999999997 3  3222221  556789999999987    77777655445554321         011  1   


Q ss_pred             CChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcC
Q 002861          607 NDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMG  686 (873)
Q Consensus       607 ~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g  686 (873)
                       .+.+++..++..+.   +......|++|++.++||.|+|||||||.++|++.+++++++.++++++++++|.++|.   
T Consensus        66 -~~~N~v~~a~~~l~---~~~~~~~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~ls~~el~~la~~iga---  138 (271)
T PRK00343         66 -EEDNLIVRAARLLQ---KATGTPLGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAELGLKLGA---  138 (271)
T ss_pred             -CcccHHHHHHHHHH---HHhCCCCCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC---
Confidence             12457766665543   12233468999999999999999999999999999999999999999999999987753   


Q ss_pred             CCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHH
Q 002861          687 TGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISS  766 (873)
Q Consensus       687 ~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~  766 (873)
                            |...++.|+..+.... |.    .+++++.+       ...++|++|+...+|++++++..  .....+.    
T Consensus       139 ------Dvp~~l~g~~~~~~g~-g~----~~~~l~~~-------~~~~vl~~p~~~~sT~~~~~~~~--~~~~~~~----  194 (271)
T PRK00343        139 ------DVPVFVRGHAAFAEGI-GE----ILTPVDLP-------EKWYLVVKPGVHISTAEIFSDPD--LTRDTPK----  194 (271)
T ss_pred             ------CceEEecCCcEEEEec-CC----EEEECCCC-------CcEEEEEeCCCCcChHHHHhhhh--hccCCCh----
Confidence                  6666666666554432 32    34566432       34678999999999999986531  1111110    


Q ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcc
Q 002861          767 IKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE  845 (873)
Q Consensus       767 ~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~  845 (873)
                       ..+.    .+......+|++....          .+     .|+++++.+.+.+ |+  +.|||||+  ++|+++++.+
T Consensus       195 -~~~~----~~~~~~~~Ndle~~~~----------~~-----~P~~~~~~~~l~~~ga--~~mSGSG~--tvF~l~~~~~  250 (271)
T PRK00343        195 -ISIA----DFLAGPFRNDCEPVVR----------KR-----YPEVAQALSWLLEYAP--SRMTGTGA--CVFAEFDTEA  250 (271)
T ss_pred             -hhHH----HHHhccccCCHHHHHH----------Hh-----ChHHHHHHHHHHhCCC--eEEecccc--ceEEEcCCHH
Confidence             0111    1122223455555441          22     4888888888876 66  88999999  9999999888


Q ss_pred             hHHHHHHHHHhc
Q 002861          846 SATELRRMLEKD  857 (873)
Q Consensus       846 ~a~~i~~~L~~~  857 (873)
                      .++++.+.+++.
T Consensus       251 ~a~~~~~~l~~~  262 (271)
T PRK00343        251 EAEQVLAQLPEW  262 (271)
T ss_pred             HHHHHHHHhhhh
Confidence            888999888865

>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]

Probab=99.82  E-value=2.4e-18  Score=182.52  Aligned_cols=274  Identities=21%  Similarity=0.194  Sum_probs=184.2

Q ss_pred             eEEEEeceEEEee----cccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCC
Q 002861          528 TVKVELPVRIDFA----GGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATP  603 (873)
Q Consensus       528 ~v~v~aP~Rv~L~----G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p  603 (873)
                      ++.+.||+||||+    |-..|-  |   |.-..+...|+++++    +.++++++..+.+.....        ..+  |
T Consensus         3 ~~~~~apAKiNL~L~V~gkr~DG--Y---Hel~sl~~~id~~D~----l~i~~~~~~~~~~~~~~~--------~~l--p   63 (289)
T COG1947           3 STKFPAPAKINLFLHVTGKRADG--Y---HELETLFQFIDLGDE----LTIRPRDDDGFIVLGTFA--------DGL--P   63 (289)
T ss_pred             ceEeeccceEEEEEEecccCCCC--c---eeeEEEEEEeccCCE----EEEEECCCCCceEecCCC--------CCC--C
Confidence            4778999999998    444442  3   455789999999998    778877655554443211        112  2


Q ss_pred             CCCCChhHHH-HHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 002861          604 FDHNDPFRLV-KSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLE  682 (873)
Q Consensus       604 ~~~~~~~~~~-kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E  682 (873)
                      .+  +  |++ ||+....    +.+....|++|+++++||.|+|||++||.++|++.+|+++++..++.+||..++.++.
T Consensus        64 ~~--~--NLv~rAa~ll~----~~~~~~~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~LG  135 (289)
T COG1947          64 TD--E--NLVYRAAELLR----KRTGIAGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRLG  135 (289)
T ss_pred             Cc--c--hHHHHHHHHHH----HHhCCCCCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence            21  2  344 4443322    2334567899999999999999999999999999999999999999999999998885


Q ss_pred             HHcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHH
Q 002861          683 QLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNL  762 (873)
Q Consensus       683 ~~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~  762 (873)
                      .         |+..+++||..+.+....     +++|+.-++      ...+++++++...+|+.+++..  ....+.+.
T Consensus       136 a---------DVPffl~g~tA~a~G~GE-----~l~~~~~~~------~~~~vl~~P~v~vsT~~vy~~~--~~~~~~~~  193 (289)
T COG1947         136 A---------DVPFFLSGGTAFAEGRGE-----KLEPLEDPP------EKWYVLAKPGVGVSTKEVYKDP--ELTRNTPK  193 (289)
T ss_pred             C---------CcCeeeeCCceEEEEccc-----eeeECCCCC------CceEEEEeCCCCCChHHHHcCc--CcccccCC
Confidence            4         999999999999887643     467776322      4689999999999999998721  11111110


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCHHHHHHHH-HHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEE
Q 002861          763 LISSIKRLTELAKNGRDALMNCDVDELGKIM-LEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLL  840 (873)
Q Consensus       763 ~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm-~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l  840 (873)
                      .           ..+..++...++..+.+.. |+-...-.++     .|++........+ |+.+.+|||+|.  |+|++
T Consensus       194 ~-----------~~~~~~~~~~~~~~~~~~~~NdLe~~~~~~-----~p~v~~~~~~l~~~ga~~~~mSGSGs--tvF~l  255 (289)
T COG1947         194 S-----------EPLIAALSLENLKQIAPFLINDLEKVALRL-----YPEVKEALSELLEYGALPARMSGSGS--TVFAL  255 (289)
T ss_pred             c-----------hhhhHHHhhhhHhhhccccccchHHHHHHh-----ChHHHHHHHHHhhcccccceEecCCC--cEEEE
Confidence            0           0111112222222222222 2111122333     3777776666664 888999999999  99999


Q ss_pred             eCCcchHHHHHHHHHhcCCCceEEEEEee
Q 002861          841 AKDAESATELRRMLEKDSNFNSEVYNWNI  869 (873)
Q Consensus       841 ~~~~~~a~~i~~~L~~~~~~~v~v~~~~i  869 (873)
                      +++.+.++++.+.+.+. ...-.++.+++
T Consensus       256 ~~~~~~a~~~~~~l~~~-~~~~~~~~~~~  283 (289)
T COG1947         256 FDTEKEAQRVAEQLPKG-VCGWVVKGVRL  283 (289)
T ss_pred             eCChHHHHHHHHHhhcc-cCCcEEEEeec
Confidence            99988899999999863 22334444443

>TIGR00144 beta_RFAP_syn beta-RFAP synthase

Probab=99.80  E-value=1.1e-17  Score=184.53  Aligned_cols=294  Identities=13%  Similarity=0.090  Sum_probs=182.3

Q ss_pred             EEEeceEEEeecccccCCC-cccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 002861          530 KVELPVRIDFAGGWSDTPP-WSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND  608 (873)
Q Consensus       530 ~v~aP~Rv~L~G~~tD~~~-~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~  608 (873)
                      +|++|+|+.+.  -.|..+ .-+.+||  +++||+-...   .+++++.++..+.+....+.        .+  |.+  .
T Consensus         2 ~v~~~~rlH~g--~~d~~~~~gr~~Gg--~G~al~~~~~---~v~v~~~~~~~v~~~~~~g~--------~l--~~~--~   62 (324)
T TIGR00144         2 IINTPSRIHLT--LIDLNGSIGRVDGG--VGLALEEPEI---VIGLKESDDMGVEFTSHAEG--------KL--GEE--Y   62 (324)
T ss_pred             eeccccccccc--ccCCCCccCccccc--eEEEEeCCcE---EEEEEECCCceEEecccccc--------cc--cch--h
Confidence            58899999875  223322 1222344  6778875443   37777776655554432111        11  111  1


Q ss_pred             hhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCC
Q 002861          609 PFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTG  688 (873)
Q Consensus       609 ~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~  688 (873)
                      ..+.+..++..+.   +... ..|++|++.++||.++|||||||+++|++.|++++++.++++++|++++.+.|.     
T Consensus        63 ~~n~~~~~~~~~~---~~~g-~~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge~-----  133 (324)
T TIGR00144        63 RRSRIMEAARKTL---KHIG-SEGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGGT-----  133 (324)
T ss_pred             HHHHHHHHHHHHH---HHhC-CCCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCCC-----
Confidence            2334444443321   1111 258999999999999999999999999999999999999999999999986553     


Q ss_pred             ChhhhhHhhcccCeeEEecC---CC-Cc---------ceeEEEeecCChhhhhhcCcEEEEEEeCCc--chHHHH--HHH
Q 002861          689 GGWQDQIGGLYPGIKFTSSF---PG-IP---------LRLQVIPLLASPQLILELQQRLLVVFTGQV--RLAHQV--LQK  751 (873)
Q Consensus       689 ~G~~Dq~~~~~GG~~~~~~~---~~-~~---------~~~~v~pl~~~~~~~~~~~~~lllv~tg~t--r~t~~~--l~~  751 (873)
                      +| +|++++++||+.+....   .. .+         ....+..+++|       +++++++.+...  ..++++  +++
T Consensus       134 s~-~~va~~~~GG~vv~~G~~~~~~~~~~~~~~~~~~~~~~~~r~~~p-------~~~~vlviP~~~~t~~are~~~lp~  205 (324)
T TIGR00144       134 SG-IGVASFEDGGFIVDGGHSSKEKSDFLPSSASSAKPAPVIARYDFP-------DWNIILAIPEIDSVSGRREVNIFQK  205 (324)
T ss_pred             Cc-cceeeeeeCCEEEECCcccccccccCcccccCCCCCCeEEecCCC-------CcEEEEEecCCCCCCcHHHHHHHHh
Confidence            22 47999999999887421   00 00         00112233332       578898888765  233333  544


Q ss_pred             HHHHHhhcCHHHHHHHHHHHHHH-HHHHHHHhccCHHHHHHHHHHHHHH-HhhhCCCCChHHHHHHHHHHccCCceEEec
Q 002861          752 VVTRYLQRDNLLISSIKRLTELA-KNGRDALMNCDVDELGKIMLEAWRL-HQELDPHCSNEFVDRLFAFADPYCCGYKLV  829 (873)
Q Consensus       752 v~~~~~~~~~~~~~~~~~i~~~~-~~~~~AL~~gd~~~lg~lm~~~~~~-~~~l~~~vs~p~l~~l~~~a~~ga~G~kls  829 (873)
                      .    ..-+.+  + ..++...+ .++..+|.++|++.|++.|++.... .+++-++.-.+.+..+++.+.+ ++|+-+|
T Consensus       206 ~----~~i~~~--d-v~~~~~~~l~~l~~al~~~d~~~~~~~l~d~~~~~f~~~~~~~r~~li~~~~~~l~~-a~g~~iS  277 (324)
T TIGR00144       206 Y----CPVPLR--D-VERICHLILMKMMPAVVEGDLDAFGESVNEIQGLGFKKIERELQDPLIKRIIDSMIS-APGAGMS  277 (324)
T ss_pred             c----CCCCHH--H-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcchhhhccccCHHHHHHHHHHHh-ccCceec
Confidence            2    001111  1 23333332 3468999999999999999875432 1112111235667776666653 4889999


Q ss_pred             CCCccceeEEEeCCcchHHHHHHHHHhc---CCCceEEEEEeecc
Q 002861          830 GAGGGGFALLLAKDAESATELRRMLEKD---SNFNSEVYNWNIYL  871 (873)
Q Consensus       830 GAGgGG~v~~l~~~~~~a~~i~~~L~~~---~~~~v~v~~~~i~~  871 (873)
                      |+|+  ++|+++++.  ++++.+.+.+.   .+...+++..+++.
T Consensus       278 GsGP--Tv~al~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~n  318 (324)
T TIGR00144       278 SFGP--TVYAVTDEK--PGNIAGAVADIFGPYGVYGRIIVTKARN  318 (324)
T ss_pred             CCCC--eEEEEecCc--hHHHHHHHHHHhhhCCCceEEEEEccCC
Confidence            9999  999999862  44555555442   23577888888775

This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.

>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=99.80  E-value=8.6e-18  Score=182.42  Aligned_cols=261  Identities=18%  Similarity=0.167  Sum_probs=170.3

Q ss_pred             eEEEEeceEEEeecccccCCCcccC--CCCeEEEeeeecccccceeEEEEEecC-CcEEEEeCCCCceeeecCCCCCCCC
Q 002861          528 TVKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKM-SGVLISDDAGNQLHIEDLTPIATPF  604 (873)
Q Consensus       528 ~v~v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~l~~~~pi~~~v~~~~~-~~i~i~~~~~~~~~~~~l~~l~~p~  604 (873)
                      .+.+.||+||||.   .|..+..-+  |.-..+.++|+++.+    +++++.++ ..+.+....          .+  + 
T Consensus         3 ~~~~~apAKINL~---L~v~g~r~dGyH~l~s~~~~i~l~D~----l~i~~~~~~~~~~~~~~~----------~~--~-   62 (283)
T PRK14610          3 KFLVKAPAKINLF---LHIVGKSESGYHLLESLFVFVNLYDF----LEIKIGSKNRGVEFVNSL----------KI--N-   62 (283)
T ss_pred             ceEEeecceEEee---eccCCcCCCCcchhheeeEEcCCCCE----EEEEECCCCCeEEEeCCC----------CC--C-
Confidence            3788999999998   444333221  455788999999998    67776543 234443210          11  1 


Q ss_pred             CCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 002861          605 DHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL  684 (873)
Q Consensus       605 ~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~  684 (873)
                      ..   -|++..|+..+.   +......|++|++.++||.++|||||||.++|++.+++++++  ++.+++.+++..+.  
T Consensus        63 ~~---~Nlv~kA~~~l~---~~~~~~~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~lG--  132 (283)
T PRK14610         63 RY---NNTVQRAIGLLL---RHSPVRTNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--IDEQILNELALSVG--  132 (283)
T ss_pred             CC---CcHHHHHHHHHH---HHhCCCCCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhC--
Confidence            11   234433333331   122234589999999999999999999999999999999996  79999999998763  


Q ss_pred             cCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEe-CCcchHHHHHHHHHHHHhhcCHHH
Q 002861          685 MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFT-GQVRLAHQVLQKVVTRYLQRDNLL  763 (873)
Q Consensus       685 ~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~t-g~tr~t~~~l~~v~~~~~~~~~~~  763 (873)
                             -|+..+++||..+.+....     +++|++...     +..+++|+.+ +...+|+++++++....... +  
T Consensus       133 -------aDvPffl~g~~a~~~G~Ge-----~l~~l~~~~-----~~~~~vl~~p~~~~~sT~~vy~~~~~~~~~~-~--  192 (283)
T PRK14610        133 -------SDVPACLDSKTLFVRGIGE-----DILLLPDLS-----LPTYVVLVAPKGKFLSTRKVFNKYECKAFSE-P--  192 (283)
T ss_pred             -------CCCcEEEECCeEEEEeccc-----EEEECcccC-----CCCeEEEEECCCCccChHHHHHhhcccccCC-c--
Confidence                   2999999999998876533     456764211     1335888877 67889999987541111000 0  


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCHHHHHH-HHHHHHHHHhhhCCCCChHHHHHHHHHHcc--CCceEEecCCCccceeEEE
Q 002861          764 ISSIKRLTELAKNGRDALMNCDVDELGK-IMLEAWRLHQELDPHCSNEFVDRLFAFADP--YCCGYKLVGAGGGGFALLL  840 (873)
Q Consensus       764 ~~~~~~i~~~~~~~~~AL~~gd~~~lg~-lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~--ga~G~klsGAGgGG~v~~l  840 (873)
                         ...+         .+..+++..+.. +.|+-......     ..|++.++++.+++  |++++.|||||+  |+|++
T Consensus       193 ---~~~~---------~~~~~~~~~~~~~~~Ndle~~~~~-----l~P~l~~~~~~l~~~~ga~~a~mSGSGs--Tvf~l  253 (283)
T PRK14610        193 ---IDNL---------PVAQDDLLELLKEARNDLLETAIS-----LVPEIEEILFVLESLEGCILSRMSGSGA--TCFAL  253 (283)
T ss_pred             ---cccc---------ccchhHHHHHHHHhcCchHHHHHH-----hChHHHHHHHHHHhcCCCceEEEeCccc--ceeEE
Confidence               0000         111122211111 11111111222     25899999998863  789999999999  99999


Q ss_pred             eCCcchHHHHHHHHHhc
Q 002861          841 AKDAESATELRRMLEKD  857 (873)
Q Consensus       841 ~~~~~~a~~i~~~L~~~  857 (873)
                      +++.+.++++.+.+++.
T Consensus       254 ~~~~~~a~~~~~~l~~~  270 (283)
T PRK14610        254 FEEEEAAEAAARYLKMT  270 (283)
T ss_pred             eCCHHHHHHHHHHhhhh
Confidence            98877788999888764

>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=99.75  E-value=1.1e-16  Score=172.03  Aligned_cols=247  Identities=14%  Similarity=0.090  Sum_probs=163.4

Q ss_pred             EEeceEEEeecccccCCCcccC--CCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 002861          531 VELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND  608 (873)
Q Consensus       531 v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~  608 (873)
                      ++||+||||.   .|..+..-+  |.-..+...|+++++    +++++.+...+.+...          ..+  +. .  
T Consensus         3 ~~apAKINL~---L~V~gkR~DGYH~l~sl~~~i~l~D~----l~i~~~~~~~i~i~~~----------~~~--~~-~--   60 (288)
T PRK00650          3 FFSPAKLNLF---LQLLGKREDGFHEIVTRYQAIAFGDQ----LSLSISSRDSLQVINA----------CHL--ET-P--   60 (288)
T ss_pred             ccccceEEee---eccCCcCCCCCcceeEEEEEcCCCCE----EEEEECCCCcEEEeCC----------CCC--Cc-c--
Confidence            4799999998   444333222  566789999999997    6776654444544311          011  11 1  


Q ss_pred             hhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCC
Q 002861          609 PFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTG  688 (873)
Q Consensus       609 ~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~  688 (873)
                       -|++-.|+..+.   +......|++|++.++||.|+|||||||.++|++.+++++++.+++++++.++|.++|.     
T Consensus        61 -~Nlv~ra~~~l~---~~~g~~~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lGa-----  131 (288)
T PRK00650         61 -SNSIWKSVALFR---RYTGITTPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIGM-----  131 (288)
T ss_pred             -ccHHHHHHHHHH---HHhCCCCCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-----
Confidence             123333333321   12223458999999999999999999999999999999999999999999999998874     


Q ss_pred             ChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHH
Q 002861          689 GGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIK  768 (873)
Q Consensus       689 ~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~  768 (873)
                          |+.+++.||..+......     .+++++.++      +.+++++.++...+|+++.+.. +   .....      
T Consensus       132 ----DvPffl~~g~a~~~G~Ge-----~l~~~~~~~------~~~~vlv~P~~~vsT~~ay~~~-~---~~~~~------  186 (288)
T PRK00650        132 ----DTPFFFSTGSALGVGRGE-----KIIALEESV------SDRYVLYFSSEGVLTSRAFAYV-Q---PSDCS------  186 (288)
T ss_pred             ----cchhhhcCceEEEEecCC-----EEEECcCCC------CceEEEEeCCCCCChHHHHHhh-c---ccccc------
Confidence                888888889888775432     356664332      3578999999999999887541 1   11000      


Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CC-ce--EEecCCCccceeEEEeCCc
Q 002861          769 RLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YC-CG--YKLVGAGGGGFALLLAKDA  844 (873)
Q Consensus       769 ~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga-~G--~klsGAGgGG~v~~l~~~~  844 (873)
                       .   ....  .-..+|++..          ...     ..|++.++.+.+.+ ++ .|  +.|||+|+  ++|++++++
T Consensus       187 -~---~~~~--~~~~Ndle~~----------~~~-----~~p~i~~~~~~l~~~~~~~~~~~~MSGSGs--t~F~l~~~~  243 (288)
T PRK00650        187 -S---RKNL--EYTQNDLEKP----------VFR-----LRLDLKEKKHWLESLWAELPVHVGLTGSGA--TLFVRYPEI  243 (288)
T ss_pred             -h---hhHh--ccCCCchHHH----------HHH-----hChHHHHHHHHHHhccccCCCeEEEeCccc--CEEEEeCCH
Confidence             0   0000  0012232221          112     24788888888776 33 23  77999999  999999987


Q ss_pred             chHHHHH-HHHHh
Q 002861          845 ESATELR-RMLEK  856 (873)
Q Consensus       845 ~~a~~i~-~~L~~  856 (873)
                      +.++++. +.+++
T Consensus       244 ~~~~~~~~~~~~~  256 (288)
T PRK00650        244 LEKDPSYAAQIQR  256 (288)
T ss_pred             HHHHHHHHHHhHh
Confidence            6666666 55544

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=99.72  E-value=6.6e-18  Score=177.29  Aligned_cols=203  Identities=15%  Similarity=0.164  Sum_probs=144.8

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCC-CCCcccccccccccceeecCCHHHHhhcCccc
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAK-DGILNENYALSLVDDLLQKPNVDELAKNHAIL   75 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~-~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~   75 (873)
                      ++|||||+|+|.+|+.    ++|+.|+.+.|++-  ++.|||++.|+ .+         +|.+|.|||++  +..     
T Consensus       118 LnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vde--pSkyGvv~~d~~~g---------rV~~F~EKPkd--~vs-----  179 (371)
T KOG1322|consen  118 LNSDVICRMPYKEMVQFHRAHGAEITIVVTKVDE--PSKYGVVVIDEDTG---------RVIRFVEKPKD--LVS-----  179 (371)
T ss_pred             ecCCeeecCCHHHHHHHHHhcCCceEEEEEeccC--ccccceEEEecCCC---------ceeEehhCchh--hhh-----
Confidence            5799999999999999    89999999998765  99999999999 45         89999999994  221     


Q ss_pred             CCCccceeeceeeecchHHHHHHhhhcCCchhhhhhhccccchhhhHHHHhhcccccccccccCCCc--hhHHhh----h
Q 002861           76 DDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWVPAKHDWLMLRPLG--KELVSK----L  149 (873)
Q Consensus        76 ~~~~~l~~~Gi~~f~~~~~~~ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~~~~~~~Y~~~~pvg--d~~~~~----l  149 (873)
                          .-++||+|+|+++++.+++.   .++.++++++|.  ...  .--+|++  -.++||-|  +|  ..|+.+    +
T Consensus       180 ----nkinaGiYi~~~~vL~ri~~---~ptSiekEifP~--~a~--~~~l~a~--~l~gfWmD--IGqpkdf~~g~~~Yl  244 (371)
T KOG1322|consen  180 ----NKINAGIYILNPEVLDRILL---RPTSIEKEIFPA--MAE--EHQLYAF--DLPGFWMD--IGQPKDFLTGFSFYL  244 (371)
T ss_pred             ----ccccceEEEECHHHHhHhhh---cccchhhhhhhh--hhh--cCceEEE--ecCchhhh--cCCHHHHHHHHHHHH
Confidence                12349999999999998883   344499999943  221  1223344  23679999  87  677776    3


Q ss_pred             hcCcce--EEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEEe-eeecCCceeCCCcEEEE
Q 002861          150 GKQRMF--SYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLS-SKIAHGVSIGEDSLIYD  226 (873)
Q Consensus       150 ~~~~i~--~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~-Svl~~~v~v~~~s~Ve~  226 (873)
                      +..|.+  .-++||++-.                     ...+.++.++.    ..++.|-. |+++++|+|++|..|++
T Consensus       245 ~s~~~~t~~r~~p~~~i~---------------------~nvlvd~~~~i----G~~C~Ig~~vvIG~r~~i~~gV~l~~  299 (371)
T KOG1322|consen  245 RSLPKYTSPRLLPGSKIV---------------------GNVLVDSIASI----GENCSIGPNVVIGPRVRIEDGVRLQD  299 (371)
T ss_pred             hhCcccCCccccCCcccc---------------------ccEeecccccc----CCccEECCCceECCCcEecCceEEEe
Confidence            344333  2233443222                     12234444432    24544544 89999999999999999


Q ss_pred             ceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeeeee
Q 002861          227 SNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEV  271 (873)
Q Consensus       227 s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~~v  271 (873)
                      |.++++..++.++-|+.+++.-          ++.|-.+..++-.
T Consensus       300 s~il~~~~~~~~s~i~s~ivg~----------~~~IG~~~~id~~  334 (371)
T KOG1322|consen  300 STILGADYYETHSEISSSIVGW----------NVPIGIWARIDKN  334 (371)
T ss_pred             eEEEccceechhHHHHhhhccc----------cccccCceEEecc
Confidence            9999999999999999998744          4666666644433

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.68  E-value=1.5e-16  Score=183.02  Aligned_cols=225  Identities=14%  Similarity=0.148  Sum_probs=158.2

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      +.||+++.+|+.+|+.    +++++|++..+++.+..+.+|++.+|+++         +|.+|.|||..++    ....+
T Consensus       135 l~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~~---------~V~~~~EKp~~~~----~~~~~  201 (425)
T PRK00725        135 LAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDEND---------RITAFVEKPANPP----AMPGD  201 (425)
T ss_pred             ecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECCCC---------CEEEEEECCCCcc----ccccC
Confidence            5799999999999987    67999999999888889999999999876         7999999997653    01123


Q ss_pred             CCccceeeceeeecchHHHHHHhhhc----CCchhhhhhhccccchhhhHHHHhhc-----c-c-ccccccccCCCc--h
Q 002861           77 DGRALLDTGIIAVRGKAWEELVMLSC----SCPPMVSELLKSGKEMSLYEDLVAAW-----V-P-AKHDWLMLRPLG--K  143 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~~ll~~~~----~~~d~g~d~~~~~~~~~~y~df~~~~-----~-~-~~~~Y~~~~pvg--d  143 (873)
                      +...++++|+|+|+.+.+.++|....    ...++..|+++.  .+....-+.+.+     . + ..+.||.|  +|  +
T Consensus       202 ~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~--l~~~~~v~~~~~~g~~~~~~~~~~gyw~d--igt~~  277 (425)
T PRK00725        202 PDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPK--IVEEGKVYAHPFSDSCVRSDPEEEPYWRD--VGTLD  277 (425)
T ss_pred             ccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHH--HhccCcEEEEEecCCccccccccCCeEEE--CCCHH
Confidence            34678999999999999988876432    123455555522  121111111111     1 1 23469999  86  6


Q ss_pred             hHHhh----hhcCc---ce---------EEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeE
Q 002861          144 ELVSK----LGKQR---MF---------SYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVV  207 (873)
Q Consensus       144 ~~~~~----l~~~~---i~---------~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V  207 (873)
                      .|+++    +...|   +|         ....||++|+..+.               +-.+.+.++.+.. +|++.++.|
T Consensus       278 ~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~---------------~~~~~~~~s~i~~-~~~i~~~~i  341 (425)
T PRK00725        278 AYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRS---------------GRRGMAINSLVSG-GCIISGAVV  341 (425)
T ss_pred             HHHHHHHHHcCCCchhhccCCCCccccCCCCCCCCeEeccCC---------------CCcceEEeCEEcC-CcEEcCccc
Confidence            67766    22221   11         11234555543211               1112345666766 445578889


Q ss_pred             EeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          208 LSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       208 ~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      .+|+|+++|.|++++.|++|+|++++.||++|.|.+++|+++          ++|++++++
T Consensus       342 ~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~----------~~i~~~~~i  392 (425)
T PRK00725        342 RRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRG----------CVIPEGMVI  392 (425)
T ss_pred             cCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCC----------CEECCCCEE
Confidence            999999999999999999999999999999999999999998          888888755

>PRK05905 hypothetical protein; Provisional

Probab=99.66  E-value=5.1e-15  Score=157.09  Aligned_cols=243  Identities=18%  Similarity=0.077  Sum_probs=153.9

Q ss_pred             EEeceEEEeecccccCCCccc---CCCCeEEEeee-ecccccceeEEEEEecCC--cEEEEeCCCCceeeecCCCCCCCC
Q 002861          531 VELPVRIDFAGGWSDTPPWSL---ERAGCVLNVAI-SLESSLPIGTIIETTKMS--GVLISDDAGNQLHIEDLTPIATPF  604 (873)
Q Consensus       531 v~aP~Rv~L~G~~tD~~~~~~---~~gG~Vl~~AI-~l~~~~pi~~~v~~~~~~--~i~i~~~~~~~~~~~~l~~l~~p~  604 (873)
                      ++||+||||.   .|..+..-   .|.-..+...| +++++    +++++.++.  .+.+.....         ..  +.
T Consensus         3 ~~apAKINL~---L~I~gkR~DdGYHel~sv~~~i~~l~D~----l~i~~~~~~~~~i~~~~~~~---------~~--~~   64 (258)
T PRK05905          3 YKSYAKINLG---LSIYKKCKKVTKHKLESIFILVENVYDD----IEIEKIEKNIDDIHYFDETN---------EI--LV   64 (258)
T ss_pred             ccccceEEee---eeecccCCCCCCcceeEEEEEccccccE----EEEEECCCCCceEEEeCCCc---------CC--CC
Confidence            5799999998   44433322   15667899999 99987    666665432  344432110         00  11


Q ss_pred             CCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 002861          605 DHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL  684 (873)
Q Consensus       605 ~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~  684 (873)
                      +  +..-++||+.....    ......|++|++.++||.|+|||||||.++|++.+|+++++  ++.+++.+++..+.. 
T Consensus        65 ~--~nli~~ka~~~l~~----~~~~~~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~~ia~~lGA-  135 (258)
T PRK05905         65 Y--SRLILVKTLEWLRD----KYNIKNHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYKDVVNKLGS-  135 (258)
T ss_pred             C--cchHHHHHHHHHHH----HhCCCCCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHHHHHHHhCC-
Confidence            1  22222266544332    22234689999999999999999999999999999999998  689999999987753 


Q ss_pred             cCCCChhhhhHhhccc-CeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHH
Q 002861          685 MGTGGGWQDQIGGLYP-GIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLL  763 (873)
Q Consensus       685 ~g~~~G~~Dq~~~~~G-G~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~  763 (873)
                              |+..+++| |..+.+....     .++|+..++      ..+++|++++...+|++++++........... 
T Consensus       136 --------DVPFfl~g~~~a~~~G~GE-----~l~pl~~~~------~~~~vlv~P~~~vST~~vY~~~~~~~~~~~~~-  195 (258)
T PRK05905        136 --------DIPFFLSGYKTAYISDYGS-----QVEDLIGQF------KLTYKVIFMNVNVSTKKVFEKFDDNQHVIKNN-  195 (258)
T ss_pred             --------CcceEEeCCccEEEEeeCc-----eeEECCCCC------CceEEEECCCCCCCHHHHHHhhccccCCcccc-
Confidence                    99999999 8998886543     467774332      34689999999999999986531110000000 


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCHHHHHHHH-HHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEe
Q 002861          764 ISSIKRLTELAKNGRDALMNCDVDELGKIM-LEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLA  841 (873)
Q Consensus       764 ~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm-~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~  841 (873)
                         ...       ....+.++.    ...+ |+-......     ..|++.++.+.+.+ ++ .+.|||||+  ++|++-
T Consensus       196 ---~~~-------~~~~~~~~~----~~~~~NdLe~~a~~-----~~P~i~~~~~~l~~~g~-~a~MSGSGs--tvF~l~  253 (258)
T PRK05905        196 ---FKT-------IIKNLKENI----VVNIHNDLQEPCFE-----LYPNLLYKYNELLNDGF-YTILSGAGS--SFIVIK  253 (258)
T ss_pred             ---hHH-------HHHHHHHhh----hcccccccHHHHHH-----hChHHHHHHHHHHhCCC-CEEEeCcch--hheEEe
Confidence               000       011111110    0111 111111122     24888888888876 54 889999999  888874


Q ss_pred             C
Q 002861          842 K  842 (873)
Q Consensus       842 ~  842 (873)
                      +
T Consensus       254 ~  254 (258)
T PRK05905        254 K  254 (258)
T ss_pred             e
Confidence            3

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.60  E-value=1.9e-15  Score=174.14  Aligned_cols=231  Identities=15%  Similarity=0.150  Sum_probs=153.0

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhc-----
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKN-----   71 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~-----   71 (873)
                      +.||+++.+|+..|+.    .++++|++..|++.+..+.+|++.+|+++         +|..|.+||..+.....     
T Consensus       122 l~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~~g---------~V~~~~Ekp~~~~~~~~~~~~s  192 (429)
T PRK02862        122 LSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDG---------RITEFSEKPKGDELKAMAVDTS  192 (429)
T ss_pred             ecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEECCCC---------cEEEEEECCCccccchhccccc
Confidence            4799999999999987    67899999999988889999999999877         79999999975421100     


Q ss_pred             -----CcccCCCccceeeceeeecchHHHHHHhhhcCCchhhhhhhccccchhhhHHHHhhcccccccccccCCCc--hh
Q 002861           72 -----HAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWVPAKHDWLMLRPLG--KE  144 (873)
Q Consensus        72 -----~a~~~~~~~l~~~Gi~~f~~~~~~~ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~~~~~~~Y~~~~pvg--d~  144 (873)
                           ..-......++++|+|+|+.+.+.+++.......++++|+++.  .+.-+.  ++++  ..+.||.+  +|  +.
T Consensus       193 ~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~~~~~~~dil~~--l~~~~~--v~~~--~~~g~w~d--igt~~~  264 (429)
T PRK02862        193 RLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPE--AIRDYK--VQSY--LFDGYWED--IGTIEA  264 (429)
T ss_pred             ccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCCChhhhHHHHHHH--HhccCc--EEEE--EeCCEEEe--CCCHHH
Confidence                 0001123458899999999999988876432234666677632  221111  1111  22569998  76  66


Q ss_pred             HHhh----h-hcCcceEEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEEeeeecCCceeC
Q 002861          145 LVSK----L-GKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIG  219 (873)
Q Consensus       145 ~~~~----l-~~~~i~~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~  219 (873)
                      |+++    + ...|...+..+....+  +..      .......+ ....+.++.++.++.| .++.|.+|+|+++|+|+
T Consensus       265 y~~an~~l~~~~~~~~~~~~~~~~i~--~~~------~~~~~a~~-~~~~~~~~~ig~~~~i-~~~~i~~svi~~~~~Ig  334 (429)
T PRK02862        265 FYEANLALTQQPNPPFSFYDEKAPIY--TRA------RYLPPSKL-LDATITESIIAEGCII-KNCSIHHSVLGIRSRIE  334 (429)
T ss_pred             HHHHHHHHHcCCCCcccccCCCCcee--ccC------CCCCCccc-cccEEEeCEECCCCEE-CCcEEEEEEEeCCcEEC
Confidence            7765    2 1111110000000000  000      00000011 1123445666654444 78889999999999999


Q ss_pred             CCcEEEEceeCC-------------------CeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          220 EDSLIYDSNISS-------------------GIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       220 ~~s~Ve~s~l~~-------------------~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      +++.|++|+|++                   +++||++|.|.+++++++          +.|.+++.+
T Consensus       335 ~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~----------~~i~~~~~~  392 (429)
T PRK02862        335 SGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKN----------ARIGNNVRI  392 (429)
T ss_pred             CCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCC----------cEECCCcEE
Confidence            999999999987                   699999999999999998          889888755

>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=99.58  E-value=4.8e-14  Score=150.39  Aligned_cols=177  Identities=15%  Similarity=0.062  Sum_probs=123.1

Q ss_pred             EEeceEEEeecccccCCCcccC--CCCeEEEeee-ecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 002861          531 VELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAI-SLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN  607 (873)
Q Consensus       531 v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI-~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~  607 (873)
                      .+||+||||.   .|..+.. +  |.-..+...| +++.+    +++++.++..+.+....          .  .|. ++
T Consensus         3 ~~apaKINL~---L~v~~kr-dGyH~l~s~~~~i~~l~D~----l~i~~~~~~~~~i~~~~----------~--~p~-~~   61 (257)
T PRK04181          3 MKAYAKVNIF---LKILGKR-GNYHELISRFVLVKDLFDE----IEFVPKSAESFELIGNF----------D--CPL-EE   61 (257)
T ss_pred             ccccceEEEE---EeeCcCC-CCCceeheeeeEccCcCcE----EEEEECCCCCEEEEcCC----------C--CCC-CC
Confidence            4799999998   3332222 2  4556888999 99997    66766444345553210          1  111 11


Q ss_pred             ChhHHHHHHHHHhhh-hhhcccc-ccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHc
Q 002861          608 DPFRLVKSALLVTGV-IHEKLIE-SMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM  685 (873)
Q Consensus       608 ~~~~~~kaal~~~~~-~~~~~~~-~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~  685 (873)
                      | . .+|++...... ....... ..|++|+++++||.|+|||||||.++|++.+++++++.+++++++.++|..+..  
T Consensus        62 N-L-v~kA~~~l~~~~~~~~~~~~~~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~lGa--  137 (257)
T PRK04181         62 N-I-IYKAYQELKNKGFSNELIEFFKKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKVGA--  137 (257)
T ss_pred             c-H-HHHHHHHHHHhccccccccCCCceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC--
Confidence            2 1 34444332210 0000111 148999999999999999999999999999999999999999999999987753  


Q ss_pred             CCCChhhhhHhhccc-CeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHH
Q 002861          686 GTGGGWQDQIGGLYP-GIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQK  751 (873)
Q Consensus       686 g~~~G~~Dq~~~~~G-G~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~  751 (873)
                             |+..+++| |..+.+....     +++|++..+       .+++|++++...+|++++++
T Consensus       138 -------DvPffl~~~~~a~~~G~Ge-----~l~~l~~~~-------~~~~lv~P~~~vsT~~vy~~  185 (257)
T PRK04181        138 -------DVAFFISGYKSANVSGIGE-----IVEEFEEEI-------LNLEIFTPNIFCSTKAVYKA  185 (257)
T ss_pred             -------CccEEecCCceEEEEeeCC-----eeEECCCCC-------CeEEEECCCCCcCHHHHHHH
Confidence                   99999999 8888876543     467774321       24899999999999999865

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.57  E-value=8.6e-15  Score=167.68  Aligned_cols=224  Identities=17%  Similarity=0.165  Sum_probs=154.3

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      +.||+++.+|+.+|+.    +++++|+++..++.+..+.+||+.+|+++         +|..|.+||..++-    ....
T Consensus       123 ~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~d~~g---------~v~~~~eKp~~~~~----~~~~  189 (407)
T PRK00844        123 FGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDG---------RIRGFLEKPADPPG----LPDD  189 (407)
T ss_pred             ecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEEECCCC---------CEEEEEECCCCccc----ccCC
Confidence            4799999999999987    67899999988888889999999999877         79999999986531    1223


Q ss_pred             CCccceeeceeeecchHHHHHHhhhc----CCchhhhhhhccccchhhhHHHHh------hccc--ccccccccCCCc--
Q 002861           77 DGRALLDTGIIAVRGKAWEELVMLSC----SCPPMVSELLKSGKEMSLYEDLVA------AWVP--AKHDWLMLRPLG--  142 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~~ll~~~~----~~~d~g~d~~~~~~~~~~y~df~~------~~~~--~~~~Y~~~~pvg--  142 (873)
                      ++..++.+|+|+|+.+.+.++|....    ...++..|+++.  .+....-+.+      .+|.  ....||.|  +|  
T Consensus       190 ~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~--l~~~~~v~~~~~~~~~~~g~n~~~~g~w~D--igt~  265 (407)
T PRK00844        190 PDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPR--LVERGRAYVYDFSTNEVPGATERDRGYWRD--VGTI  265 (407)
T ss_pred             CCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHH--HhccCeEEEEEcccccccccccCCCCEEEE--CCCH
Confidence            44568999999999999878776421    224455566522  2211100111      1121  12479999  76  


Q ss_pred             hhHHhh----hhcCcc---eE---------EEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCccccccccee
Q 002861          143 KELVSK----LGKQRM---FS---------YCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAV  206 (873)
Q Consensus       143 d~~~~~----l~~~~i---~~---------~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~  206 (873)
                      +.|+++    |...+-   +.         ...||+++.  ++...              ...+.++.++.++.| .++.
T Consensus       266 ~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------------~~~~~~~~ig~~~~I-~~~~  328 (407)
T PRK00844        266 DAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFV--DGGGR--------------VGSAQDSLVSAGSII-SGAT  328 (407)
T ss_pred             HHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEe--cCCCc--------------cceEEeCEEcCCCEE-CCee
Confidence            677765    322211   10         013344432  11000              012334555553444 4788


Q ss_pred             EEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          207 VLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       207 V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      |.+|+|+++|+|++++.|++|+|++++.||++|.|.+++++++          ++|.+++.+
T Consensus       329 i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~----------~~i~~~~~i  380 (407)
T PRK00844        329 VRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKN----------VVVPPGATI  380 (407)
T ss_pred             eEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCC----------CEECCCCEE
Confidence            9999999999999999999999999999999999999999887          889888755

>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=99.53  E-value=3e-12  Score=132.24  Aligned_cols=215  Identities=19%  Similarity=0.224  Sum_probs=148.9

Q ss_pred             hHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHc--CC
Q 002861          610 FRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM--GT  687 (873)
Q Consensus       610 ~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~--g~  687 (873)
                      .++++.++..+.   +.+....|+++.++|+||.|+||.||||.+.|++.|+.++.|.++++-+++++..++-...  +.
T Consensus        51 ~~li~~~~~~v~---e~~g~~~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~~~~~~i~~l~a~~S~~aGvSv  127 (278)
T COG1685          51 TRLIERCVERVR---EKYGIPLGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDFEILRLGARASKEAGVSV  127 (278)
T ss_pred             hHHHHHHHHHHH---HHcCCCcceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHhcCceE
Confidence            346766666543   2344556899999999999999999999999999999999999999999999998887654  44


Q ss_pred             CChhhhhHhhcccCeeEEecCCCCcceeEEEee-cCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHH
Q 002861          688 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPL-LASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISS  766 (873)
Q Consensus       688 ~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl-~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~  766 (873)
                      .|-+||..++++||+.+.+.+.-     ++... +.       .+...++.-++.++.++++--.   +           
T Consensus       128 TGA~DDa~AS~~GG~~iTDN~~m-----~Ilrr~~~-------~~~~vlI~~p~~k~~~~~vdv~---~-----------  181 (278)
T COG1685         128 TGAFDDACASYLGGIVITDNRKM-----RILRRLDL-------PELTVLILAPGEKRLSANVDVN---R-----------  181 (278)
T ss_pred             eccchHHHHHHhCCeEEecchhh-----eehhcccc-------CCceEEEEecCCccccccCCHH---H-----------
Confidence            67899999999999999875432     12221 22       2567788888888776654211   1           


Q ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-HHhhhCCCCChHHHHHHHHHHccCCceEEecCCCccceeEEEeCCcc
Q 002861          767 IKRLTELAKNGRDALMNCDVDELGKIMLEAWR-LHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAE  845 (873)
Q Consensus       767 ~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~-~~~~l~~~vs~p~l~~l~~~a~~ga~G~klsGAGgGG~v~~l~~~~~  845 (873)
                      ++.+...++.+.+.-.+|+|..   +|.-|-. ....|+  ..   ++-+.++.+.|+.++.+||-|+  ..+++++++ 
T Consensus       182 ~r~~a~~~e~A~~lA~~G~~~~---Am~lNG~~y~~aLG--~~---~e~~~~ale~GA~~aglSGtGP--a~~Al~~~~-  250 (278)
T COG1685         182 LRLIAPVVEEAFRLALKGEYFK---AMVLNGILYCSALG--YD---LEPALKALEAGAAAAGLSGTGP--AYFALTEDP-  250 (278)
T ss_pred             HHHhhHHHHHHHHHHhcccHHH---HHHHhHHHHHHHhC--CC---hHHHHHHHhcccceeccCCCCC--ceEEEecCc-
Confidence            1222223334444445676533   4444432 233342  22   2334555566999999999999  899999875 


Q ss_pred             hHHHHHHHHHhcCCCceEEEEEeec
Q 002861          846 SATELRRMLEKDSNFNSEVYNWNIY  870 (873)
Q Consensus       846 ~a~~i~~~L~~~~~~~v~v~~~~i~  870 (873)
                        +++.+.|.+.    .+|+..++.
T Consensus       251 --~~v~ea~~~~----G~V~~t~~~  269 (278)
T COG1685         251 --EEVAEAWSKI----GDVIETRNV  269 (278)
T ss_pred             --HHHHHHHHhC----CeEEEEecC
Confidence              7888888876    456665554

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=99.53  E-value=2.4e-14  Score=165.41  Aligned_cols=230  Identities=16%  Similarity=0.179  Sum_probs=137.7

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcC---c
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNH---A   73 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~---a   73 (873)
                      |.||+++.+|+..|+.    ++|++|++..+++.+.++++||+.+|+++         +|..|.|||..+..+..+   .
T Consensus       128 ~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~~~---------~v~~~~Ekp~~~~~~~~~~~~~  198 (436)
T PLN02241        128 LSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTG---------RIIEFSEKPKGDELKAMQVDTT  198 (436)
T ss_pred             ecCCeEEccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEECCCC---------CEEEEEECCCCccccccccccc
Confidence            5799999999999987    68999999999998888999999998877         799999999764211000   0


Q ss_pred             c-------cCCCccceeeceeeecchHHHHHHhhhc-CCchhhhhhhccccchhh-hHHHHhhcccccccccccCCCc--
Q 002861           74 I-------LDDGRALLDTGIIAVRGKAWEELVMLSC-SCPPMVSELLKSGKEMSL-YEDLVAAWVPAKHDWLMLRPLG--  142 (873)
Q Consensus        74 ~-------~~~~~~l~~~Gi~~f~~~~~~~ll~~~~-~~~d~g~d~~~~~~~~~~-y~df~~~~~~~~~~Y~~~~pvg--  142 (873)
                      +       .+....++++|+|+|+++.+..++.... ...++++|++  +..+.. +.-+  ++  ..+.||.+  +|  
T Consensus       199 ~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~dil--~~l~~~g~~v~--~~--~~~gyw~d--Ig~~  270 (436)
T PLN02241        199 VLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEII--PGAIKEGYNVQ--AY--LFDGYWED--IGTI  270 (436)
T ss_pred             ccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhHHHH--HHHhhcCCeEE--EE--eeCCEEEE--CCCH
Confidence            0       0112458999999999999988876332 1224555554  222211 0000  00  22469999  76  


Q ss_pred             hhHHhh----hhcCcceEEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEEeeeecCCcee
Q 002861          143 KELVSK----LGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSI  218 (873)
Q Consensus       143 d~~~~~----l~~~~i~~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v  218 (873)
                      +.|+++    |...|...+..+. ..++.++..      .. ...+ ....+.++.+..++.|. ++.|.+|+|+++|+|
T Consensus       271 ~~y~~a~~~~l~~~~~~~~~~~~-~~i~~~~~~------~~-~~~~-~~~~i~~s~I~~~~~I~-~~~I~~svI~~~~~I  340 (436)
T PLN02241        271 KSFYEANLALTKQPPKFSFYDPD-APIYTSPRF------LP-PSKI-EDCRITDSIISHGCFLR-ECKIEHSVVGLRSRI  340 (436)
T ss_pred             HHHHHHHHHHhcCCchhhccCCC-CcccccCCC------CC-CcEe-cCCeEEEeEEcCCcEEc-CeEEEeeEEcCCCEE
Confidence            677776    3322211111111 111111100      00 0000 01123334444433344 667777788888888


Q ss_pred             CCCcEEEEceeCCC-------------------eEECCCcEEeCcCCCCCCCCCccCccceeeCCCee
Q 002861          219 GEDSLIYDSNISSG-------------------IQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHC  267 (873)
Q Consensus       219 ~~~s~Ve~s~l~~~-------------------v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~  267 (873)
                      ++++.|++|+++++                   ++||++|+|.+++|..+          +.|.+++.
T Consensus       341 g~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~----------v~Ig~~~~  398 (436)
T PLN02241        341 GEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKN----------ARIGKNVV  398 (436)
T ss_pred             CCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCC----------CEECCCcE
Confidence            88888888777662                   36777777777777665          66666653

>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase

Probab=99.47  E-value=9.5e-12  Score=135.94  Aligned_cols=223  Identities=16%  Similarity=0.080  Sum_probs=143.4

Q ss_pred             HHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCChh
Q 002861          612 LVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGW  691 (873)
Q Consensus       612 ~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~~G~  691 (873)
                      .++.++..+.   +......+++|++.++||.++|||||||.++|++.|++++++.+++.++|+++|.+.|.        
T Consensus        68 ~v~~~l~~~~---~~~~~~~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gsG--------  136 (305)
T TIGR01240        68 KTSNCLDDFR---QLRKEQEKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGSG--------  136 (305)
T ss_pred             HHHHHHHHHH---HhcCCCCceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC--------
Confidence            4555555442   12334468999999999999999999999999999999999999999999999998762        


Q ss_pred             hhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcc---hHHHHHHHHHHHHhhcCHHHHHHHH
Q 002861          692 QDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVR---LAHQVLQKVVTRYLQRDNLLISSIK  768 (873)
Q Consensus       692 ~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr---~t~~~l~~v~~~~~~~~~~~~~~~~  768 (873)
                       ...++++||++.+....+. .....+|++.++.+ .++. .++++.+....   +|..+ +..+.    .++.+...++
T Consensus       137 -sa~~s~~GG~v~~~~g~~~-~~s~a~~i~~~~~~-~~~~-~~v~vv~~~~k~vsSt~gm-~~~~~----ts~~~~~~v~  207 (305)
T TIGR01240       137 -SACRSLFGGYVAWEKGKDD-HSSAAVQVADDSDW-PQXA-MCVLVVNDIKKDVSSRQGM-QLTVA----TSELFKEWIE  207 (305)
T ss_pred             -CeeeeeecCeEEEEcCCCC-CCeeEEECCCcccc-ccce-EEEEEcCCCCCCCCCHHHH-HHhhh----cCccHHHHHH
Confidence             2345899999877642111 11234566544211 0122 33344443333   34433 22211    1223334445


Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhh-hC---CC--CChHHHHHHHHHH---cc-CCceEEecCCCccceeE
Q 002861          769 RLTELAKNGRDALMNCDVDELGKIMLEAWRLHQE-LD---PH--CSNEFVDRLFAFA---DP-YCCGYKLVGAGGGGFAL  838 (873)
Q Consensus       769 ~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~-l~---~~--vs~p~l~~l~~~a---~~-ga~G~klsGAGgGG~v~  838 (873)
                      +..+....+.+|+.++|++.+|++...+...+.. +.   |.  ..+|..-++++..   ++ |...+-..-||+  .+.
T Consensus       208 ~~~~~l~~~~~ai~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~~g~~~~~T~DAGp--Nv~  285 (305)
T TIGR01240       208 HVVPDFEVXRKAIKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQGGTICYFTMDAGP--NVK  285 (305)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHhCCCcEEEEEcCCC--CEE
Confidence            5554566799999999999999997766443322 21   11  1224444444433   33 656677888998  888


Q ss_pred             EEeCCcchHHHHHHHHHhc
Q 002861          839 LLAKDAESATELRRMLEKD  857 (873)
Q Consensus       839 ~l~~~~~~a~~i~~~L~~~  857 (873)
                      .++.. +..+++.+.+.+.
T Consensus       286 vl~~~-~~~~~v~~~~~~~  303 (305)
T TIGR01240       286 VLYLA-ENLSKLFEFIYKL  303 (305)
T ss_pred             EEEcc-ccHHHHHHHHHHh
Confidence            89886 6788888888765

Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=99.47  E-value=1.9e-13  Score=154.20  Aligned_cols=214  Identities=18%  Similarity=0.198  Sum_probs=145.3

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      +.||+|+..|+.+|+.    .++++|++..+.+.+.++++|++.+|+++         +|.+|.+||..+.-    ....
T Consensus       117 ~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~---------~v~~~~ekp~~~~~----~~~~  183 (361)
T TIGR02091       117 LSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDG---------RIVDFEEKPANPPS----IPGM  183 (361)
T ss_pred             ecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEECCCC---------CEEEEEECCCCccc----cccc
Confidence            5799999999888887    56788999999888899999999999776         78999999965431    1122


Q ss_pred             CCccceeeceeeecchHHHHHHhhhcCCchhhhhhhccccchhhhHHHHhhcc------c-ccccccccCCCc--hhHHh
Q 002861           77 DGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWV------P-AKHDWLMLRPLG--KELVS  147 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~~ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~~------~-~~~~Y~~~~pvg--d~~~~  147 (873)
                      ++..++++|+|+|+++.+.+++.......         ....+.+.|++..+.      . ....||.|  +|  +.|++
T Consensus       184 ~~~~~~~~Giyi~~~~~l~~~l~~~~~~~---------~~~~~~~~d~l~~l~~~~~v~~~~~~~~w~d--igt~~~~~~  252 (361)
T TIGR02091       184 PDFALASMGIYIFDKDVLKELLEEDADDP---------ESSHDFGKDIIPRALEEGSVQAYLFSGYWRD--VGTIDSFWE  252 (361)
T ss_pred             ccccEEeeeEEEEcHHHHHHHHHHHhhcC---------CcccccHHHHHHHHhhcCceEEEeeCCEEEE--CCCHHHHHH
Confidence            35568999999999999877776431100         001111223333331      1 22478988  76  66766


Q ss_pred             h----hhcCcceE------------EEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEEeee
Q 002861          148 K----LGKQRMFS------------YCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSK  211 (873)
Q Consensus       148 ~----l~~~~i~~------------~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Sv  211 (873)
                      +    |...+...            ...++..|+|-+                   ..+.++.+.. +|.+.++.|.+|+
T Consensus       253 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------------------~~i~~~~ig~-~~~I~~~~v~~s~  312 (361)
T TIGR02091       253 ANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSD-------------------AQVVDSLVSE-GCIISGATVSHSV  312 (361)
T ss_pred             HHHHHhCCCchhhccccCCceecCCCCCCCceEecCC-------------------CEEECCEECC-CCEECCCEEEccE
Confidence            5    33322111            011223333211                   1223344444 4455455888999


Q ss_pred             ecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          212 IAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       212 l~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      ++++|.|+++++|++|+|++++.||++|+|.++++.++          ++|.+++.|
T Consensus       313 i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~----------~~i~~~~~i  359 (361)
T TIGR02091       313 LGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKN----------VRIGEGVVI  359 (361)
T ss_pred             ECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCC----------CEECCCCEe
Confidence            99999999999999999999999999999999999887          888888744

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.45  E-value=2.9e-13  Score=153.87  Aligned_cols=216  Identities=16%  Similarity=0.197  Sum_probs=140.9

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      +.||+++.+|+..|+.    +++++|++...++.+.++.+||+.+|+++         +|.+|.+||+.+.         
T Consensus       123 ~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~g---------~V~~~~eKp~~~~---------  184 (380)
T PRK05293        123 LSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENM---------RIVEFEEKPKNPK---------  184 (380)
T ss_pred             ecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCCC---------cEEEEEeCCCCCC---------
Confidence            4699999999999987    57889999888888889999999998776         7999999996442         


Q ss_pred             CCccceeeceeeecchHHHHHHhhhcCCchhhhhhhccccchhhhHHHHhhcc-------c-ccccccccCCCc--hhHH
Q 002861           77 DGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWV-------P-AKHDWLMLRPLG--KELV  146 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~~ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~~-------~-~~~~Y~~~~pvg--d~~~  146 (873)
                        ..++.+|+|+|+.+.+.+++......         .....+.+.|++..+.       . ..+.||.+  +|  +.|+
T Consensus       185 --~~~~~~Giyi~~~~~l~~~l~~~~~~---------~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~d--igt~~~~~  251 (380)
T PRK05293        185 --SNLASMGIYIFNWKRLKEYLIEDEKN---------PNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKD--VGTIESLW  251 (380)
T ss_pred             --cceeeeEEEEEcHHHHHHHHHHHhhc---------CCchhhhHHHHHHHHhhcCCeEEEEEeCCEEEe--CCCHHHHH
Confidence              34789999999999888877633110         0011122234443331       1 22469988  76  5666


Q ss_pred             hh----hhcCcceEEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEEeeeecCCceeCCCc
Q 002861          147 SK----LGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDS  222 (873)
Q Consensus       147 ~~----l~~~~i~~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s  222 (873)
                      ++    +...+-..+..+..+.+ -++.       ......++....+.++.+.. +|.+. +.|.+|+|+++|+|++++
T Consensus       252 ~a~~~~l~~~~~~~~~~~~~~~~-~~~~-------~~~~~~i~~~~~i~~~~Ig~-~~~I~-~~v~~s~ig~~~~I~~~~  321 (380)
T PRK05293        252 EANMELLRPENPLNLFDRNWRIY-SVNP-------NLPPQYIAENAKVKNSLVVE-GCVVY-GTVEHSVLFQGVQVGEGS  321 (380)
T ss_pred             HHHHHHcCCCchhhhcCCCCcee-cCCc-------CCCCCEECCCCEEecCEECC-CCEEc-ceecceEEcCCCEECCCC
Confidence            65    22221000000111100 0000       00000111122233444444 34443 357799999999999999


Q ss_pred             EEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCee
Q 002861          223 LIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHC  267 (873)
Q Consensus       223 ~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~  267 (873)
                      .|++|+|++++.||++|.|.+++|.++          +.|++++.
T Consensus       322 ~i~~svi~~~~~i~~~~~i~~~ii~~~----------~~i~~~~~  356 (380)
T PRK05293        322 VVKDSVIMPGAKIGENVVIERAIIGEN----------AVIGDGVI  356 (380)
T ss_pred             EEECCEEeCCCEECCCeEEeEEEECCC----------CEECCCCE
Confidence            999999999999999999999999887          88888864

>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]

Probab=99.45  E-value=5.6e-11  Score=122.24  Aligned_cols=199  Identities=16%  Similarity=0.111  Sum_probs=124.1

Q ss_pred             CCCCChHHHHHHHHH--HHHHHHhCCCCCH-HHHHHHHHHHHHH--cCCCChhhhhHhhcccCeeEEecCCCCccee-EE
Q 002861          644 GSGLGTSSILAAAVV--KALLQITDGDQSN-ENVARLVLLLEQL--MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRL-QV  717 (873)
Q Consensus       644 GsGLGSSSAlavA~l--~Al~~~~g~~ls~-~eL~~la~~~E~~--~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~-~v  717 (873)
                      ..||||||++++.++  ..+....+.+++. .+|.++|+.+--.  -|.|+|. |+++++||++.+-++.|+.-.++ ++
T Consensus       107 KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggIGSGf-DiaaA~fGsiiyrRF~p~li~~l~qi  185 (337)
T COG3890         107 KTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGIGSGF-DIAAAIFGSIIYRRFEPGLIPKLRQI  185 (337)
T ss_pred             cCCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhCCCCccc-hhhHhhhcceEEeecCcchhhhhHhh
Confidence            589999999999998  3344435666665 7888888777643  3568887 89999999999988766632111 22


Q ss_pred             EeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 002861          718 IPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAW  797 (873)
Q Consensus       718 ~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~  797 (873)
                      ..+.+.       ++++++.+++....|..+++++.+......++......++...+..+.   +. .+++.......-.
T Consensus       186 g~~nfg-------~y~LmmGd~a~gSeTvglV~kv~~w~ns~~peelkc~de~nsrvl~l~---~~-sLdE~~s~~~~ir  254 (337)
T COG3890         186 GAVNFG-------DYYLMMGDQAIGSETVGLVCKVNKWRNSILPEELKCNDEMNSRVLNLI---KL-SLDESNSKSKAIR  254 (337)
T ss_pred             Cccccc-------CeeeeecccccCccchHHHHHHHHHhhcCChHHHHhHHHHHHHHHHHH---hh-hHHHHHHHHHHHH
Confidence            233332       578999999999999999999866544443332223333333332211   11 3333222222112


Q ss_pred             HHHhhhCC----CCChHHHHHHHHHHcc--CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhc
Q 002861          798 RLHQELDP----HCSNEFVDRLFAFADP--YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD  857 (873)
Q Consensus       798 ~~~~~l~~----~vs~p~l~~l~~~a~~--ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~  857 (873)
                      ..+++..+    -+.++....++..+.+  |+++.-+.|||+|+.++++.++.   .++++.|...
T Consensus       255 rslrritee~~adiep~kqt~~Ld~i~~l~gvl~~lipgaGggdaif~l~~~~---~e~re~w~~~  317 (337)
T COG3890         255 RSLRRITEEGLADIEPIKQTAALDSIFDLLGVLCDLIPGAGGGDAIFLLYRPN---IEAREAWLSK  317 (337)
T ss_pred             HHHHHHHHHhccccccchhhhhhhhHHhccCceEeecccCCCCceEEEEeccc---HHHHHHHHhC
Confidence            22222211    1345555555444443  99999999999999999999863   3555577665

>COG1907 Predicted archaeal sugar kinases [General function prediction only]

Probab=99.40  E-value=1.5e-10  Score=120.73  Aligned_cols=221  Identities=17%  Similarity=0.154  Sum_probs=147.0

Q ss_pred             cCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCChhhhhHhhcccCeeEEecCC-
Q 002861          631 MGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFP-  709 (873)
Q Consensus       631 ~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~~G~~Dq~~~~~GG~~~~~~~~-  709 (873)
                      .|++|.|.+.+|...||||.+.++.|+..|+++++|+.++-+|||..+.+.     .-+|+. .++.-+||+..--... 
T Consensus        70 ~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgRG-----~tSgiG-v~afe~GGFIVDGGh~~  143 (312)
T COG1907          70 EGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGRG-----GTSGIG-VYAFEYGGFIVDGGHSF  143 (312)
T ss_pred             CceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHccC-----Ccccee-EEEEEECCEEEECCccc
Confidence            689999999999999999999999999999999999999999998765432     123332 5677789987532211 


Q ss_pred             ----CCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhcc
Q 002861          710 ----GIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQ-VLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNC  784 (873)
Q Consensus       710 ----~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~-~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~g  784 (873)
                          ..+. ..+-...+|.      +|.|+|+-+..+|...+ --.++..++..-+.+....+.++  ...++..|+.++
T Consensus       144 ~f~ps~~s-P~I~R~dfPe------dW~~VlaIP~~~rg~~~~~E~~if~~~~p~p~~~~~~ls~~--vLm~mmPavvE~  214 (312)
T COG1907         144 GFLPSSAS-PLIFRLDFPE------DWRFVLAIPEVERGVSGRREVDIFKKYCPVPLEEVGELSHR--VLMKMMPAVVER  214 (312)
T ss_pred             CcccCCCC-ceeeeecCCC------ceEEEEEecCCCccccchHHHHHHHhcCCCCHHHHHHHHHH--HHHHHhHHHHhh
Confidence                1111 1122334443      58999999887652211 11111122222233322223322  356788999999


Q ss_pred             CHHHHHHHHHHHHHHH----hhhCCCCChHHHHHHHHHHccCCceEEecCCCccceeEEEeCCcch---HHHHHHHHHhc
Q 002861          785 DVDELGKIMLEAWRLH----QELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAES---ATELRRMLEKD  857 (873)
Q Consensus       785 d~~~lg~lm~~~~~~~----~~l~~~vs~p~l~~l~~~a~~ga~G~klsGAGgGG~v~~l~~~~~~---a~~i~~~L~~~  857 (873)
                      |++.||+.+++.++..    +.......++.+.++++.+.+.++++-+|-  ||.++|+++++...   +.++++.+.++
T Consensus       215 Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~~a~~agqSS--wGPtvY~i~d~~~~~~~~~~~~~~~~~~  292 (312)
T COG1907         215 DIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVEAAYGAGQSS--WGPTVYGIVDSREAGSVVRKLIDILLEE  292 (312)
T ss_pred             CHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHHhcccccccc--cCCEEEEeccccccchHHHHHHHHHHhc
Confidence            9999999999998865    222223567999999999988777666654  55599999997542   35566666665


Q ss_pred             CCCceEEEEEee
Q 002861          858 SNFNSEVYNWNI  869 (873)
Q Consensus       858 ~~~~v~v~~~~i  869 (873)
                      + ...+|+.-+.
T Consensus       293 g-~~gev~vT~~  303 (312)
T COG1907         293 G-IGGEVFVTKA  303 (312)
T ss_pred             C-CceEEEEecc
Confidence            3 5666665543

>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2

Probab=99.39  E-value=1e-12  Score=111.06  Aligned_cols=67  Identities=36%  Similarity=0.506  Sum_probs=62.3

Q ss_pred             EEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCChhhhhHhhcccC
Q 002861          634 QIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPG  701 (873)
Q Consensus       634 ~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~~G~~Dq~~~~~GG  701 (873)
                      +|++.++||.++|||||||+++|++.+++++++.+++++++++++..+|+..+.++|+|| ++++|||
T Consensus         1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~g~~~g~d~-~~~~~GG   67 (67)
T PF00288_consen    1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYIGKPSGIDD-AASAYGG   67 (67)
T ss_dssp             EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHCSSSHSHHH-HHHHHCS
T ss_pred             CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcCCCChhhH-HHHHhCc
Confidence            588999999999999999999999999999999999999999999999986788877655 8899997

7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....

>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.27  E-value=1.2e-10  Score=118.79  Aligned_cols=198  Identities=17%  Similarity=0.173  Sum_probs=144.2

Q ss_pred             cccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCChhhhhHhhcccCeeEEe
Q 002861          627 LIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTS  706 (873)
Q Consensus       627 ~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~~G~~Dq~~~~~GG~~~~~  706 (873)
                      .+...|+.+.+.|+||.|.||+||+|..+|++.|+.+++|.+++..+|++++..+|..        |  +.+|.+.+.++
T Consensus        78 ~~~~~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iEPt--------D--siiF~~~tlFd  147 (293)
T COG4542          78 KLINTGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIEPT--------D--SIIFDKATLFD  147 (293)
T ss_pred             ceecCCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcCCc--------c--ceecccceeeh
Confidence            4456789999999999999999999999999999999999999999999999999952        2  24677788777


Q ss_pred             cCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCH
Q 002861          707 SFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDV  786 (873)
Q Consensus       707 ~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~gd~  786 (873)
                      ...|..++    -+...      +...++++..+.+..|...-+.-..+      .......++.++.+...+|+..||.
T Consensus       148 ~r~g~~~~----~~g~~------PpL~ilv~e~~~~v~T~~y~q~~r~e------~~~~~~~e~~~l~~~v~~A~~~~~~  211 (293)
T COG4542         148 QREGRVIE----FLGEM------PPLHILVFEGKGTVETVDYNQPPRGE------KLLAPLAELGNLINLVEKALKVGDP  211 (293)
T ss_pred             hccchHHH----hcCCC------CceEEEEEcCCCceeeeeccCCchhh------hhhhhHHHHHHHHHHHHHHHccCCH
Confidence            66664221    12211      24577777777777665543210001      1122345555666778899999999


Q ss_pred             HHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcc---hHHHHHHHHHh
Q 002861          787 DELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE---SATELRRMLEK  856 (873)
Q Consensus       787 ~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~---~a~~i~~~L~~  856 (873)
                      ..+|++-+-+.-.+++.-   ..|.+++|.+++.+ +++|.-.+.+|.   ++++.-|..   +..+++-.+.+
T Consensus       212 ~~lG~AAT~SAv~~Q~~L---PK~~~~~lL~l~e~~~~~Gv~VAHSGt---mlGli~D~~~~~d~~k~~~~l~r  279 (293)
T COG4542         212 KLLGEAATLSAVKNQDRL---PKPGLNELLRLVEETCAIGVIVAHSGT---MLGLIYDRKYALDPRKLRVVLAR  279 (293)
T ss_pred             HHHHHHHHHHHHhhcccc---CchhHHHHHHHHHHhcccceEEeccCc---eEEeeeccccccchHHHHHHHHH
Confidence            999999999987777763   57999999999988 888988888875   777665432   23344444443

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=99.26  E-value=3.1e-11  Score=136.72  Aligned_cols=214  Identities=14%  Similarity=0.136  Sum_probs=130.1

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccce-EEEeCCCCCcccccccccccceeecCCHHHHhhcCccc
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHG-VIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAIL   75 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hG-V~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~   75 (873)
                      |.||+++.+|+..|+.    .++++|++..+++.+..+.+| |+..|+++         +|..|.+|+..+         
T Consensus       120 lnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~~~g---------~v~~~~~~~~~~---------  181 (369)
T TIGR02092       120 LNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESG---------KVKSIGQNLNPE---------  181 (369)
T ss_pred             ECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEcCCC---------CEEeccccCCCC---------
Confidence            5799999999999988    579999999998876777785 55667665         577764433221         


Q ss_pred             CCCccceeeceeeecchHHHHHHhhhcCCchhhhhhhccccchhhhHHHHhhc-------ccccccccccCCCc--hhHH
Q 002861           76 DDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAW-------VPAKHDWLMLRPLG--KELV  146 (873)
Q Consensus        76 ~~~~~l~~~Gi~~f~~~~~~~ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~-------~~~~~~Y~~~~pvg--d~~~  146 (873)
                        ....+.+|+|+|+.+.+.+++....          + ..+.+.+.|++..+       +-....||.|  +|  +.|+
T Consensus       182 --~~~~~~~Giyi~~~~~l~~~l~~~~----------~-~~~~~~~~d~i~~~~~~~~v~~~~~~g~w~d--Igt~~~l~  246 (369)
T TIGR02092       182 --EEENISLDIYIVSTDLLIELLYECI----------Q-RGKLTSLEELIRENLKELNINAYEYTGYLAN--INSVKSYY  246 (369)
T ss_pred             --CcceeeeeEEEEEHHHHHHHHHHHh----------h-cCccccHHHHHHHHhccCcEEEEecCCceeE--cCCHHHHH
Confidence              1124679999999998877775321          0 01112223443332       1133579988  76  5666


Q ss_pred             hh----hhcCcceEEE-ecCceeE-EecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEEeeeecCCceeCC
Q 002861          147 SK----LGKQRMFSYC-AYELLFL-HFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGE  220 (873)
Q Consensus       147 ~~----l~~~~i~~~~-~p~a~F~-h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~  220 (873)
                      .+    |......... ..++..+ .+..        . ....++....+.++.+.. +|.+. +.|.+|+|+++|+|++
T Consensus       247 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~-~p~~i~~~~~i~~~~Ig~-~~~i~-~~v~~s~i~~~~~I~~  315 (369)
T TIGR02092       247 KANMDLLDPQNFQSLFYSSQGPIYTKVKD--------E-PPTYYAENSKVENSLVAN-GCIIE-GKVENSILSRGVHVGK  315 (369)
T ss_pred             HHHHHHhCCcchhhhcCCCCCceeeccCC--------C-CCcEEcCCCEEEEeEEcC-CCEEe-eEEeCCEECCCCEECC
Confidence            55    2221100000 0111111 0000        0 000112222234455544 44443 4677889999999999


Q ss_pred             CcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          221 DSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       221 ~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      +|.|++|+|++++.||++|.|.++++.++          ++|.++..+
T Consensus       316 ~~~i~~sii~~~~~I~~~~~i~~~ii~~~----------~~v~~~~~~  353 (369)
T TIGR02092       316 DALIKNCIIMQRTVIGEGAHLENVIIDKD----------VVIEPNVKI  353 (369)
T ss_pred             CCEEEeeEEeCCCEECCCCEEEEEEECCC----------CEECCCCEe
Confidence            99999999999999999999999888776          777777643

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]

Probab=99.25  E-value=5.9e-09  Score=108.56  Aligned_cols=203  Identities=21%  Similarity=0.202  Sum_probs=141.3

Q ss_pred             ccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCChhhhhHhhcccCeeEEecCC
Q 002861          630 SMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFP  709 (873)
Q Consensus       630 ~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~~G~~Dq~~~~~GG~~~~~~~~  709 (873)
                      ..++++.+++++|.|+|+|.|++.+.+.+.|++..++..  .++.+++|+.+|-..+|  |+.|+++..+|| ..++..+
T Consensus        72 ~~~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV~~gt--GLGDVvAq~~GG-lViR~~p  146 (283)
T COG1829          72 PDGVGVRIESPVPLGCGYGVSGAGALGTALALAEELGLG--EESAARIAHVAEVENGT--GLGDVVAQYTGG-LVIRVKP  146 (283)
T ss_pred             ccCcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHcCC--CchHHHHHhcCc-EEEEecC
Confidence            345889999999999999999999999999999998876  88899999999976654  667999999999 5567788


Q ss_pred             CCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhc-cCHHH
Q 002861          710 GIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMN-CDVDE  788 (873)
Q Consensus       710 ~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~-gd~~~  788 (873)
                      |.|....+..++.++       .+ ++..+-..-+|++++..-.             .+++++...++...|.+ -+++ 
T Consensus       147 G~Pg~~~vd~Ip~~~-------~~-V~~~~~g~l~T~~vi~~~~-------------~~~i~~~g~~~l~ellk~Ptle-  204 (283)
T COG1829         147 GGPGEGEVDRIPVPG-------LR-VITISLGELSTKSVITDEV-------------VRKINEAGKRALAELLKNPTLE-  204 (283)
T ss_pred             CCCCeEEEEEeecCC-------ce-EEEEEcccccHHHhhhhHH-------------HHHHHHHHHHHHHHHHhCCCHH-
Confidence            888767778877653       23 4445555678888876522             23444455555555544 4454 


Q ss_pred             HHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhcCCCceEEEEE
Q 002861          789 LGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNSEVYNW  867 (873)
Q Consensus       789 lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~~~~~v~v~~~  867 (873)
                        ++|+.+.+--+.+.  .++.++...++.... +.+|+.+.=  .|-+++++.+..+..+.+.+.+.+.  +++..+.|
T Consensus       205 --~f~~~a~~FA~~~G--l~~~~v~~~~~~~~~~g~l~as~~m--lg~tVFa~~~~~e~~~~~~~~~~~~--~~~~l~~~  276 (283)
T COG1829         205 --NFMEEAREFARRTG--LMSEEVKEAAEALHSVGGLGASMAM--LGVTVFALSPEAERLAEVGKDLGAP--YDIRLIYG  276 (283)
T ss_pred             --HHHHHHHHHHHHhC--cCHHHHHHHHHHhhhcCchhHhHHh--hCcEEEEeccccchHHHHHHhhccc--cceeEEec
Confidence              45666666555653  666777777777664 656554433  3448999985444555555555442  55555544

>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2

Probab=99.15  E-value=1.1e-10  Score=103.20  Aligned_cols=81  Identities=27%  Similarity=0.316  Sum_probs=69.3

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcchHHHHHHHHH
Q 002861          777 GRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLE  855 (873)
Q Consensus       777 ~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~  855 (873)
                      |++||.++|++.++++|+++|...........+|+++.+++.+++ |++++++||||+|||+++|+++++.++++++.|+
T Consensus         1 m~~al~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~   80 (85)
T PF08544_consen    1 MIKALAEGDLELLGELMNENQENEPENYREVLTPEIDELKEAAEENGALGAKMSGSGGGPTVFALCKDEDDAERVAEALR   80 (85)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred             CHHHHHCcCHHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHHCCCCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence            578999999999999999998742211223678999999999987 7899999999999999999987788999999998


Q ss_pred             hc
Q 002861          856 KD  857 (873)
Q Consensus       856 ~~  857 (873)
                      +.
T Consensus        81 ~~   82 (85)
T PF08544_consen   81 EH   82 (85)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....

>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]

Probab=99.06  E-value=4.5e-08  Score=106.02  Aligned_cols=225  Identities=19%  Similarity=0.207  Sum_probs=145.3

Q ss_pred             HHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCCh
Q 002861          611 RLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGG  690 (873)
Q Consensus       611 ~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~~G  690 (873)
                      .-++.++..+.   .++....++.|...++.|.+.|||||||.++|+.+|++++++.++|..+|.++|..     |.+++
T Consensus        72 ~k~~~~ld~~R---~~~~~~~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~-----gSGSa  143 (329)
T COG3407          72 EKARRVLDRFR---KEYGISFKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARL-----GSGSA  143 (329)
T ss_pred             HHHHHHHHHHH---HhhcccceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHH-----hccch
Confidence            34556665543   22334567889999999999999999999999999999999999999999999864     34443


Q ss_pred             hhhhHhhcccCeeEEecCCCCcc-eeEEEeecCChhhhhhcCcEEEEEEeCCcc-hHHHHHHHHHHHHhhcCHHHHHHHH
Q 002861          691 WQDQIGGLYPGIKFTSSFPGIPL-RLQVIPLLASPQLILELQQRLLVVFTGQVR-LAHQVLQKVVTRYLQRDNLLISSIK  768 (873)
Q Consensus       691 ~~Dq~~~~~GG~~~~~~~~~~~~-~~~v~pl~~~~~~~~~~~~~lllv~tg~tr-~t~~~l~~v~~~~~~~~~~~~~~~~  768 (873)
                          .-+++||+......+|... ...+.++..+++    +...++++.+..++ ++++..+.-+.    .++-+...+.
T Consensus       144 ----~RS~~Gg~~~W~~~~g~~~~~~~~~~~~~~~e----~~~i~~~~~~~~k~vsS~~gm~~~~~----tS~~y~~w~~  211 (329)
T COG3407         144 ----SRSIFGGFVLWEKGEGEDSAAEQLFRLDLWKE----LAMIVLVISPKKKKVSSREGMQLTAE----TSPFYDAWLE  211 (329)
T ss_pred             ----hhhhcCCeeEeccCCCCccceeeeccccCccc----cceEEEEEccccCCCCchHHHHHHHH----cChHHHHHHH
Confidence                3689999977765543211 122344544432    34555555554433 34444333111    1233334455


Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHH-HHhhhCC---C--CChHHHHHHHHHH---cc-CCceEEecCCCccceeE
Q 002861          769 RLTELAKNGRDALMNCDVDELGKIMLEAWR-LHQELDP---H--CSNEFVDRLFAFA---DP-YCCGYKLVGAGGGGFAL  838 (873)
Q Consensus       769 ~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~-~~~~l~~---~--vs~p~l~~l~~~a---~~-ga~G~klsGAGgGG~v~  838 (873)
                      ...+..+++..+++++|++.++++..++-. .+..+..   +  .-+++.-++++.+   ++ |...+-..-||+  .++
T Consensus       212 ~~~~~~~~m~~~~~~~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~~s~~ii~~v~~~r~~g~~~~fT~DaGP--nV~  289 (329)
T COG3407         212 HSEEDLEEMKEAIREKDFEKIGELAENDSLEMHATLMSSGPPFFYLTDESLRIIEFVHELRKEGNAVYFTMDAGP--NVK  289 (329)
T ss_pred             HHHHhHHHHHHHHhccCHHHHHHHHHhhHHHHHHHHhccCCceEEECccHHHHHHHHHHHHhcCCceEEEEcCCC--ceE
Confidence            555556789999999999999999776633 2333321   1  1223444444444   33 445567778888  899


Q ss_pred             EEeCCcchHHHHHHHHHhcC
Q 002861          839 LLAKDAESATELRRMLEKDS  858 (873)
Q Consensus       839 ~l~~~~~~a~~i~~~L~~~~  858 (873)
                      .++.+ +..+++.+.+.+.+
T Consensus       290 v~~~~-~~l~~~~~~~~~~~  308 (329)
T COG3407         290 VITLE-ENLIDLLEILKTLE  308 (329)
T ss_pred             EEEec-ccHHHHHHHHhhcc
Confidence            99986 66777888777653

>PLN02407 diphosphomevalonate decarboxylase

Probab=99.04  E-value=2.5e-08  Score=108.94  Aligned_cols=207  Identities=18%  Similarity=0.120  Sum_probs=124.3

Q ss_pred             EEEEee--ccCCCCCCChHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHcCCCChhhhhHhhcccCeeEEecCCC
Q 002861          634 QIRTWA--NVPRGSGLGTSSILAAAVVKALLQITDGDQS-NENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPG  710 (873)
Q Consensus       634 ~i~i~s--~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls-~~eL~~la~~~E~~~g~~~G~~Dq~~~~~GG~~~~~~~~~  710 (873)
                      .++|.|  ++|.++|||||||..+|++.|++.+++.+++ ..+|..+|.     .|  +|. |. .++|||+..+.....
T Consensus       105 ~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr-----~G--SGS-a~-rS~~Gg~v~w~~G~~  175 (343)
T PLN02407        105 HVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIAR-----QG--SGS-AC-RSLYGGFVKWNMGKK  175 (343)
T ss_pred             cEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHh-----cc--ChH-HH-HHhhCCeEEecCCCC
Confidence            455555  9999999999999999999999999999999 999999987     33  442 33 499999998875411


Q ss_pred             -CcceeEEEeecCChhhhhhcCcEEEEEEeCC--cchHHHHHHHHHHHHhhcCHHHHHHHHH-HHHHHHHHHHHHhccCH
Q 002861          711 -IPLRLQVIPLLASPQLILELQQRLLVVFTGQ--VRLAHQVLQKVVTRYLQRDNLLISSIKR-LTELAKNGRDALMNCDV  786 (873)
Q Consensus       711 -~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~--tr~t~~~l~~v~~~~~~~~~~~~~~~~~-i~~~~~~~~~AL~~gd~  786 (873)
                       ....-..+|+.... .-.++..-+++++.+.  ..+|..+-.-+ .    .++.+...+++ ..+...++.+||+++|+
T Consensus       176 ~d~~ds~A~~i~~~~-~~~dl~~~i~vv~~~~K~vsSt~GM~~tv-~----TSp~~~~w~~~~~~~~~~~~~~Ai~~~Df  249 (343)
T PLN02407        176 EDGSDSIAVQLADEK-HWDDLVIIIAVVSSRQKETSSTSGMRESV-E----TSPLLQHRAKEVVPKRILQMEEAIKNRDF  249 (343)
T ss_pred             CCCCceeEEECCCcc-CCccceEEEEEEcCCcCCCCchHHHHHhh-h----cChhHHHHHHhhhHHHHHHHHHHHHhcCH
Confidence             11112234543211 1011333444455443  22333332211 1    12222233333 34455678999999999


Q ss_pred             HHHHHHHHHHHHHHhh-hC---CCC--ChHHHHHHH---HHHcc--CC-ceEEecCCCccceeEEEeCCcchHHHHHHHH
Q 002861          787 DELGKIMLEAWRLHQE-LD---PHC--SNEFVDRLF---AFADP--YC-CGYKLVGAGGGGFALLLAKDAESATELRRML  854 (873)
Q Consensus       787 ~~lg~lm~~~~~~~~~-l~---~~v--s~p~l~~l~---~~a~~--ga-~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L  854 (873)
                      +.||++...+...+.. +.   |.+  .+|.--.++   ...++  |. ..+--.-||+  .+..++.+.+..++|.+.+
T Consensus       250 ~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~~~v~yT~DAGP--Nv~vl~~~~~~~~~v~~~~  327 (343)
T PLN02407        250 ASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAGP--NAVLIALNRKVAAQLLQRL  327 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCCccEEEEecCCC--CEEEEEChhhhHHHHHHHH
Confidence            9999997766443222 21   111  123333333   33333  43 5677789999  8888887643333488766


Q ss_pred             Hhc
Q 002861          855 EKD  857 (873)
Q Consensus       855 ~~~  857 (873)
                      .+.
T Consensus       328 ~~~  330 (343)
T PLN02407        328 LYY  330 (343)
T ss_pred             HHh
Confidence            665

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=99.00  E-value=2.2e-09  Score=120.94  Aligned_cols=181  Identities=18%  Similarity=0.167  Sum_probs=109.9

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      +.||+++.+|+..|+.    +++++|+++.+.+  ....+|+..+|+++         +|.+|.+||..+.         
T Consensus       104 ~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~--~~~~~g~~~~~~~~---------~v~~~~ekp~~~~---------  163 (353)
T TIGR01208       104 YLGDNLIQDGISRFVKSFEEKDYDALILLTKVR--DPTAFGVAVLEDGK---------RILKLVEKPKEPP---------  163 (353)
T ss_pred             EECCeecCccHHHHHHHHHhcCCCcEEEEEECC--ChhhCeEEEEcCCC---------cEEEEEECCCCCC---------
Confidence            3589999999988876    6789999988764  35679999887555         7999999997542         


Q ss_pred             CCccceeeceeeecchHHHHHHhhhcCCchhhhhhhccccchhhhHHHHhhcc-------c-ccccccccCCCc--hhHH
Q 002861           77 DGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWV-------P-AKHDWLMLRPLG--KELV  146 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~~ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~~-------~-~~~~Y~~~~pvg--d~~~  146 (873)
                        ....++|+|+|+.. +.+.+.... +     .   ...+++ ..|++..+.       . .-+.||.+  +|  +.|+
T Consensus       164 --~~~~~~Giy~~~~~-l~~~l~~~~-~-----~---~~~e~~-l~d~l~~l~~~g~~v~~~~~~g~w~d--igt~~dl~  228 (353)
T TIGR01208       164 --SNLAVVGLYMFRPL-IFEAIKNIK-P-----S---WRGELE-ITDAIQWLIEKGYKVGGSKVTGWWKD--TGKPEDLL  228 (353)
T ss_pred             --ccceEEEEEEECHH-HHHHHHhcC-C-----C---CCCcEE-HHHHHHHHHHcCCeEEEEEeCcEEEe--CCCHHHHH
Confidence              34789999999984 444553211 0     0   011222 234444331       1 22468887  65  5566


Q ss_pred             hh----hhcCcceEEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEEeeeecCCceeCCCc
Q 002861          147 SK----LGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDS  222 (873)
Q Consensus       147 ~~----l~~~~i~~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s  222 (873)
                      ++    +..  +.. .+. +  ++  +                      .+.+.++..+..++.|.+|+|.+.|.|++++
T Consensus       229 ~a~~~ll~~--~~~-~~~-~--i~--~----------------------~~~i~~~~~i~~~~~i~~~~i~~~~~Ig~~~  278 (353)
T TIGR01208       229 DANRLILDE--VER-EVQ-G--VD--D----------------------ESKIRGRVVVGEGAKIVNSVIRGPAVIGEDC  278 (353)
T ss_pred             HHHHHHHhh--ccc-ccC-C--cC--C----------------------CCEEcCCEEECCCCEEeCCEEECCcEECCCC
Confidence            54    221  100 000 0  00  0                      0000112234456666677777777778888


Q ss_pred             EEEEceeCCCeEECCCcEEeCcCC
Q 002861          223 LIYDSNISSGIQIGSLSIVVGTNF  246 (873)
Q Consensus       223 ~Ve~s~l~~~v~IG~~~iisg~~i  246 (873)
                      .|++|+|.+++.||++|+|.++.+
T Consensus       279 ~I~~~~i~~~~~Ig~~~~i~~~~i  302 (353)
T TIGR01208       279 IIENSYIGPYTSIGEGVVIRDAEV  302 (353)
T ss_pred             EEcCcEECCCCEECCCCEEeeeEE
Confidence            887777777777777777766555

Alternate name: dTDP-D-glucose synthase

>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]

Probab=98.95  E-value=2.7e-07  Score=97.38  Aligned_cols=206  Identities=18%  Similarity=0.176  Sum_probs=120.8

Q ss_pred             CCCCCChHHHHHHHHHHHHHHHhCC----------CCC--HHH----HHHHHHHHHHHcC-CCChhhhhHhhcccCeeEE
Q 002861          643 RGSGLGTSSILAAAVVKALLQITDG----------DQS--NEN----VARLVLLLEQLMG-TGGGWQDQIGGLYPGIKFT  705 (873)
Q Consensus       643 ~GsGLGSSSAlavA~l~Al~~~~g~----------~ls--~~e----L~~la~~~E~~~g-~~~G~~Dq~~~~~GG~~~~  705 (873)
                      ...||||||+++.++++++...+|.          +++  ..+    |++.|+..-  .| .|+|+ |+.+++||...+.
T Consensus       151 ~KTGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~A--QGKvGSGF-DV~aA~yGS~rYr  227 (459)
T KOG4519|consen  151 AKTGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLA--QGKVGSGF-DVSAAVYGSQRYR  227 (459)
T ss_pred             cccCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHh--cCCccCCc-ceehhhccceeee
Confidence            3689999999999999888877753          122  222    333333332  34 36776 8999999999988


Q ss_pred             ecCCCC----cc--------------------eeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCH
Q 002861          706 SSFPGI----PL--------------------RLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDN  761 (873)
Q Consensus       706 ~~~~~~----~~--------------------~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~  761 (873)
                      ++.|..    |+                    ...+....+|      ..+++++.+-....+|..++++|.+-...+++
T Consensus       228 RF~P~lis~lp~~i~~~~~~~el~~~V~k~~W~~~~~~f~LP------~~~~L~mGd~~gGSsTp~mV~kVk~Wq~s~~p  301 (459)
T KOG4519|consen  228 RFSPELISFLPQVIVTGLPLNELIGTVLKGKWDNKRTEFSLP------PLMNLFMGDGSGGSSTPSMVGKVKKWQMSDPP  301 (459)
T ss_pred             eCCHHHHHHHHHHHhccChhHHHHHHhhhhhcccccccccCC------ceeeeeeecCCCCCCcHHHHHHHHHHhhcCCh
Confidence            864421    10                    0001112222      24577777655667888999887543333323


Q ss_pred             HHHHHHHHHHHH---------------------HHHHHHHHhccC--------HHHHHHHHHHHHHHHhhhCC----CCC
Q 002861          762 LLISSIKRLTEL---------------------AKNGRDALMNCD--------VDELGKIMLEAWRLHQELDP----HCS  808 (873)
Q Consensus       762 ~~~~~~~~i~~~---------------------~~~~~~AL~~gd--------~~~lg~lm~~~~~~~~~l~~----~vs  808 (873)
                      +...+...+...                     ..+.++.|...+        +.++.+.|..-..++|++..    .++
T Consensus       302 e~~k~~~~lddansr~~~~l~kl~~l~~~h~d~~~~v~eSl~~~~~~~~~~~e~~E~r~a~~~IRr~~r~it~ea~vdIE  381 (459)
T KOG4519|consen  302 EARKNWQNLDDANSRLETKLNKLSKLAKDHWDVYLRVIESLSVLTINEAIIKELLEAREAMLRIRRLMRQITEEASVDIE  381 (459)
T ss_pred             hHhhhhcchhhHHHHHHhhhhhhhHhhhhchhHHHHHHhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            322222211111                     122223333221        23444455555555555542    266


Q ss_pred             hHHHHHHHHHHcc--CCceEEecCCCccceeEEEeCCc-chHHHHHHHHHhc
Q 002861          809 NEFVDRLFAFADP--YCCGYKLVGAGGGGFALLLAKDA-ESATELRRMLEKD  857 (873)
Q Consensus       809 ~p~l~~l~~~a~~--ga~G~klsGAGgGG~v~~l~~~~-~~a~~i~~~L~~~  857 (873)
                      ++....|++-+..  |++++-+.||||=+.+++++... +..+++.+.|+..
T Consensus       382 P~~QT~lLD~~~sl~GVl~~gvPGAGGfDAif~it~~dvd~~~~~~~~w~~~  433 (459)
T KOG4519|consen  382 PESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQAWSSH  433 (459)
T ss_pred             chhhhhHhhhhhcccceEEecccCCCCcceEEEEeecchhHHHHHHhhhccc
Confidence            7777788887764  99999999999999999998752 2345666666654

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=4.7e-09  Score=118.05  Aligned_cols=204  Identities=19%  Similarity=0.196  Sum_probs=119.7

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      |.||++--+|...|+.    +++..|++..+++-.  +.|||..++.+.  .      +|.+|.+||.. +        .
T Consensus       105 ~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~--~~~Gvv~~~~~~--~------~v~~f~ekp~~-~--------~  165 (358)
T COG1208         105 LNGDVLTDLDLSELLEFHKKKGALATIALTRVLDP--SEFGVVETDDGD--G------RVVEFREKPGP-E--------E  165 (358)
T ss_pred             EECCeeeccCHHHHHHHHHhccCccEEEEEecCCC--CcCceEEecCCC--c------eEEEEEecCCC-C--------C
Confidence            5799999999888887    556677777666555  899999998542  1      79999999965 2        1


Q ss_pred             CCccceeeceeeecchHHHHHHhhhcCCchhhhhhhccccchhhhHHHHhhcccccccccccCCCc--hhHHhh---hhc
Q 002861           77 DGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWVPAKHDWLMLRPLG--KELVSK---LGK  151 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~~ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~~~~~~~Y~~~~pvg--d~~~~~---l~~  151 (873)
                      +...++.+|+|+|+++++. ++. .....+|..+++  |..+..-. .++++  ..+.||.|  +|  +.|.++   +..
T Consensus       166 ~~~~~in~Giyi~~~~v~~-~i~-~~~~~~~~~~~~--~~l~~~~~-~v~~~--~~~g~W~d--ig~p~d~~~a~~~~~~  236 (358)
T COG1208         166 PPSNLINAGIYIFDPEVFD-YIE-KGERFDFEEELL--PALAAKGE-DVYGY--VFEGYWLD--IGTPEDLLEANELLLR  236 (358)
T ss_pred             CCCceEEeEEEEECHHHhh-hcc-cCCcccchhhHH--HHHHhCCC-cEEEE--EeCCeEEe--CCCHHHHHHHHHHHHh
Confidence            2456899999999999887 221 112233333344  22221100 01111  23449999  76  455554   111


Q ss_pred             -CcceEEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEE-eeeecCCceeCCCcEEEEcee
Q 002861          152 -QRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVL-SSKIAHGVSIGEDSLIYDSNI  229 (873)
Q Consensus       152 -~~i~~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~-~Svl~~~v~v~~~s~Ve~s~l  229 (873)
                       ..-.    +.+. ....-..      ..+ ..     ..-+.....++.|..++.|. +++++++|.|+.++.|.+|+|
T Consensus       237 ~~~~~----~~~~-~~~~~~~------~~~-~~-----i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii  299 (358)
T COG1208         237 GDGKS----PLGP-IEEPVVI------IRS-AY-----IIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSII  299 (358)
T ss_pred             ccccc----cccc-ccccccc------ccc-ce-----EeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEE
Confidence             1000    1000 0000000      000 00     01111222222233333332 378999999999999999999


Q ss_pred             CCCeEECCCcEEeCcCCCCC
Q 002861          230 SSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       230 ~~~v~IG~~~iisg~~i~~~  249 (873)
                      ++++.||+++.|.+++|..+
T Consensus       300 ~~~~~i~~~~~i~~sIi~~~  319 (358)
T COG1208         300 MDNVVIGHGSYIGDSIIGEN  319 (358)
T ss_pred             EcCCEECCCCEEeeeEEcCC
Confidence            99999999999999999877

>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []

Probab=98.79  E-value=7.9e-09  Score=82.00  Aligned_cols=38  Identities=29%  Similarity=0.449  Sum_probs=31.6

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEE
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIET  576 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~  576 (873)
                      +.++||||++|+|||+||+      ||.|+++||++++.    +.+++
T Consensus        14 ~~~~APGRvnliGeHtDy~------gG~Vl~~Ai~~~~~----~a~~~   51 (52)
T PF10509_consen   14 VVASAPGRVNLIGEHTDYN------GGFVLPAAIDLRTY----VAVSP   51 (52)
T ss_dssp             EEEEEEEEEEEE-TT-GGG------T-EEEEEEEEEEEE----EEEEE
T ss_pred             EEEECCceEEecCcccccC------CCeEEEEEeeccEE----EEEEc
Confidence            7899999999999999997      99999999999987    55655

The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.75  E-value=3e-08  Score=115.63  Aligned_cols=201  Identities=15%  Similarity=0.242  Sum_probs=104.4

Q ss_pred             CCCe--eeccCCCcCcC--CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCC
Q 002861            2 TGDV--LPCFDASTMIL--PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDD   77 (873)
Q Consensus         2 ~gD~--i~~~d~~~~~~--~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~   77 (873)
                      .||+  +...++..|..  .+.++++.+.++  +..+.|||+.. +++         +|.+|.|||...+-       ++
T Consensus       103 ~gD~P~i~~~~i~~l~~~~~~~~~~i~~~~~--~~~~~yG~v~~-~~g---------~V~~~~EKp~~~~~-------~~  163 (456)
T PRK09451        103 YGDVPLISVETLQRLRDAKPQGGIGLLTVKL--DNPTGYGRITR-ENG---------KVVGIVEQKDATDE-------QR  163 (456)
T ss_pred             eCCcccCCHHHHHHHHHHhhcCCEEEEEEEc--CCCCCceEEEe-cCC---------eEEEEEECCCCChH-------Hh
Confidence            4776  45566666654  345566666654  45578999754 455         79999999964321       11


Q ss_pred             CccceeeceeeecchHHHHHHhhhcC----Cchhhhhhhcc----ccchhhhH--HHHhhcccccccccccCCCc--hhH
Q 002861           78 GRALLDTGIIAVRGKAWEELVMLSCS----CPPMVSELLKS----GKEMSLYE--DLVAAWVPAKHDWLMLRPLG--KEL  145 (873)
Q Consensus        78 ~~~l~~~Gi~~f~~~~~~~ll~~~~~----~~d~g~d~~~~----~~~~~~y~--df~~~~~~~~~~Y~~~~pvg--d~~  145 (873)
                      ...++++|+|+|+.+.+.+++.....    ..++..|+++.    ...+..|.  +++..   ....+|.+  .+  ++|
T Consensus       164 ~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~---~G~~~~~d--i~~~~~y  238 (456)
T PRK09451        164 QIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEV---EGVNNRLQ--LARLERV  238 (456)
T ss_pred             hccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHh---cCCCCHHH--HHHHHHH
Confidence            22478999999999999887763211    11222333311    00111110  00000   00012333  33  456


Q ss_pred             HhhhhcCcce---EEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEE-eeeecCCceeCCC
Q 002861          146 VSKLGKQRMF---SYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVL-SSKIAHGVSIGED  221 (873)
Q Consensus       146 ~~~l~~~~i~---~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~-~Svl~~~v~v~~~  221 (873)
                      +++-...++.   ...++|..+...|+..      .                 ..++.|..++.|. +++|+++|.|+++
T Consensus       239 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~------i-----------------g~~~~I~~~~~i~~~v~ig~~~~I~~~  295 (456)
T PRK09451        239 YQAEQAEKLLLAGVMLRDPARFDLRGTLT------H-----------------GRDVEIDTNVIIEGNVTLGNRVKIGAG  295 (456)
T ss_pred             HHHHHHHHHHHcCCEEeCCCEEEECCcEE------E-----------------CCCCEEcCCeEEecCcEECCCCEECCC
Confidence            6531100000   1223555443322200      0                 0011122233333 3567777778777


Q ss_pred             cEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861          222 SLIYDSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       222 s~Ve~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      ++|++|+|++++.|+++|.|.++++.++
T Consensus       296 ~~i~~~~ig~~~~I~~~~~i~~~~ig~~  323 (456)
T PRK09451        296 CVLKNCVIGDDCEISPYSVVEDANLGAA  323 (456)
T ss_pred             ceEecCEEcCCCEEcCCEEEeCCccCCC
Confidence            8777777788888888887777777665

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.63  E-value=5.4e-08  Score=114.07  Aligned_cols=74  Identities=20%  Similarity=0.319  Sum_probs=53.0

Q ss_pred             CCCe--eeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCccc
Q 002861            2 TGDV--LPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAIL   75 (873)
Q Consensus         2 ~gD~--i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~   75 (873)
                      .||+  +...++..|+.    +++++|++..+++  ..+.||+..+|+++         +|.+|.|||..++=.      
T Consensus       106 ~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~--~~~~yG~v~~d~~g---------~v~~~~Ek~~~~~~~------  168 (481)
T PRK14358        106 YGDTPLLRPDTLRALVADHRAQGSAMTILTGELP--DATGYGRIVRGADG---------AVERIVEQKDATDAE------  168 (481)
T ss_pred             eCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcC--CCCCceEEEECCCC---------CEEEEEECCCCChhH------
Confidence            5776  44555656554    6788999888876  45679999999887         799999999753200      


Q ss_pred             CCCccceeeceeeecchH
Q 002861           76 DDGRALLDTGIIAVRGKA   93 (873)
Q Consensus        76 ~~~~~l~~~Gi~~f~~~~   93 (873)
                      . ..-++.+|+|+|+.+.
T Consensus       169 ~-~~~~~n~Giyi~~~~~  185 (481)
T PRK14358        169 K-AIGEFNSGVYVFDARA  185 (481)
T ss_pred             h-hCCeEEEEEEEEchHH
Confidence            0 1124789999999775

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.60  E-value=5.3e-08  Score=113.68  Aligned_cols=202  Identities=15%  Similarity=0.152  Sum_probs=106.4

Q ss_pred             CCCe--eeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCccc
Q 002861            2 TGDV--LPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAIL   75 (873)
Q Consensus         2 ~gD~--i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~   75 (873)
                      .||+  +...++.+|+.    .++++++...+++  ....+|+..+|+++         +|.+|.+||....-       
T Consensus       103 ~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~--~~~~~g~v~~d~~g---------~v~~~~ek~~~~~~-------  164 (459)
T PRK14355        103 CGDVPLLRAETLQGMLAAHRATGAAVTVLTARLE--NPFGYGRIVRDADG---------RVLRIVEEKDATPE-------  164 (459)
T ss_pred             ECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcC--CCCcCCEEEEcCCC---------CEEEEEEcCCCChh-------
Confidence            4776  44566666665    5678888877653  23579999988776         79999999843210       


Q ss_pred             CCCccceeeceeeecchHHHHHHhhhcCCchhhhhhhccccchhhhHHHHhhc---c----c-ccccc--cccCCCc--h
Q 002861           76 DDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAW---V----P-AKHDW--LMLRPLG--K  143 (873)
Q Consensus        76 ~~~~~l~~~Gi~~f~~~~~~~ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~---~----~-~~~~Y--~~~~pvg--d  143 (873)
                      ++...++.+|+|+|+++.+.+++..- ...     .  ...+++ +.|++..+   +    . ...+|  |.+  ++  +
T Consensus       165 ~~~~~~~~~Giy~~~~~~l~~~l~~~-~~~-----~--~~~e~~-~~d~i~~l~~~g~~v~~~~~~~~~~~~~--i~~~~  233 (459)
T PRK14355        165 ERSIREVNSGIYCVEAAFLFDAIGRL-GND-----N--AQGEYY-LTDIVAMAAAEGLRCLAFPVADPDEIMG--VNDRA  233 (459)
T ss_pred             HhhccEEEEEEEEEeHHHHHHHHHHc-Ccc-----c--cCCcee-HHHHHHHHHHCCCeEEEEEcCCHHHhcC--CCCHH
Confidence            11234789999999998877766421 000     0  011111 12444333   1    0 12345  656  64  5


Q ss_pred             hHHhhh---hcCcceEEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEE-eeeecCCceeC
Q 002861          144 ELVSKL---GKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVL-SSKIAHGVSIG  219 (873)
Q Consensus       144 ~~~~~l---~~~~i~~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~-~Svl~~~v~v~  219 (873)
                      .|+++.   .......+...+..+++-.+ .     .......+           ..++.|..++.|. +++|+++|.|+
T Consensus       234 ~~~~a~~~l~~~~~~~~~~~~~~~i~~~~-~-----~i~~~v~i-----------g~~~~I~~~~~I~~~~~Ig~~~~I~  296 (459)
T PRK14355        234 QLAEAARVLRRRINRELMLAGVTLIDPET-T-----YIDRGVVI-----------GRDTTIYPGVCISGDTRIGEGCTIE  296 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEECCCc-e-----EECCCeEE-----------cCCCEEeCCcEEeCCCEECCCCEEC
Confidence            666651   10000000011112222100 0     00000000           1111122222221 35778888888


Q ss_pred             CCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861          220 EDSLIYDSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       220 ~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      ++++|++|+|++++.||++|+|.++++..+
T Consensus       297 ~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~  326 (459)
T PRK14355        297 QGVVIKGCRIGDDVTVKAGSVLEDSVVGDD  326 (459)
T ss_pred             CCCEEeCCEEcCCCEECCCeEEeCCEECCC
Confidence            888888888888888888888887777665

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=98.50  E-value=6.2e-07  Score=102.59  Aligned_cols=52  Identities=19%  Similarity=0.221  Sum_probs=44.6

Q ss_pred             ccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861          198 VSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       198 ~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      +..|.+|+.|.||||+.+|+||++++|.+|+|..||+||.||+|.+|+|-.+
T Consensus       339 gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~  390 (673)
T KOG1461|consen  339 GTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD  390 (673)
T ss_pred             cccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC
Confidence            3467788888899999999999999999999999999999999998888665

>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]

Probab=98.48  E-value=1.5e-05  Score=84.17  Aligned_cols=191  Identities=24%  Similarity=0.285  Sum_probs=112.4

Q ss_pred             CEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCChhhhhHhhcccCeeEEecC---
Q 002861          632 GLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSF---  708 (873)
Q Consensus       632 G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~~G~~Dq~~~~~GG~~~~~~~---  708 (873)
                      .+.|...+|+|..+||.||||--+|++.||+++|+++.++++|.++|.+     |.|+    ..-++|||+...+..   
T Consensus       105 ~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~-----GSGS----ACRSl~GG~V~W~mG~~~  175 (395)
T KOG2833|consen  105 KLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQ-----GSGS----ACRSLYGGFVAWEMGELD  175 (395)
T ss_pred             eEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhc-----cCch----hhhhhhcceeEeeccccc
Confidence            4666667899999999999999999999999999999999999998863     3322    446899999987532   


Q ss_pred             CCC-cceeEEEeec-CChhhhhhcCcEEEEEEeCC---cchHHHHHHHHHHHHhhcCHHHHHHHHH-HHHHHHHHHHHHh
Q 002861          709 PGI-PLRLQVIPLL-ASPQLILELQQRLLVVFTGQ---VRLAHQVLQKVVTRYLQRDNLLISSIKR-LTELAKNGRDALM  782 (873)
Q Consensus       709 ~~~-~~~~~v~pl~-~~~~~~~~~~~~lllv~tg~---tr~t~~~l~~v~~~~~~~~~~~~~~~~~-i~~~~~~~~~AL~  782 (873)
                      +|. .+-+++.|-. +++     + ..+++|.++.   +.+|..+.+.+....     -+...+++ +-+...+|.+|+.
T Consensus       176 DGsDsvAvq~~p~~~W~e-----l-~ililVvs~~~K~t~ST~GM~~sveTS~-----L~qhRi~~vVP~Ri~~m~eaI~  244 (395)
T KOG2833|consen  176 DGSDSVAVQIAPSSHWPE-----L-RILILVVSDAKKKTGSTEGMRRSVETSQ-----LLQHRIESVVPQRIQQMREAIR  244 (395)
T ss_pred             CCCceeEEEeccccCCCc-----e-EEEEEEeccccccccccHHHHHHHHHhH-----HHHHHHHhhhHHHHHHHHHHHH
Confidence            221 1222333321 221     1 2344444432   345555544432111     11111122 1123467899999


Q ss_pred             ccCHHHHHHH-HHHHHHHHhh-h--CCCC--ChHHHHHHHHHHcc-----C-CceEEecCCCccceeEEEeC
Q 002861          783 NCDVDELGKI-MLEAWRLHQE-L--DPHC--SNEFVDRLFAFADP-----Y-CCGYKLVGAGGGGFALLLAK  842 (873)
Q Consensus       783 ~gd~~~lg~l-m~~~~~~~~~-l--~~~v--s~p~l~~l~~~a~~-----g-a~G~klsGAGgGG~v~~l~~  842 (873)
                      +.|++.|+++ |.++-+.+.- |  +|.+  .+..-.+++..+.+     | -..+----||+--|+|.+.+
T Consensus       245 ~rDF~~FA~lTm~DSNqFHAvclDT~PPI~YmNd~S~~iI~~vh~~N~~~G~t~vAYTFDAGPNAvl~~l~e  316 (395)
T KOG2833|consen  245 ERDFESFAKLTMKDSNQFHAVCLDTFPPIFYLNDTSWRIISLVHEFNASAGGTRVAYTFDAGPNAVLIVLEE  316 (395)
T ss_pred             hcCHHHHHHHHHhcchhhhhhhhccCCCeEEeccchHHHHHHHHHHHhccCCeeEEEEecCCCceEEEEhhh
Confidence            9999999998 5555333222 2  2211  11112234444432     2 23445568999767776643

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.47  E-value=5.3e-07  Score=105.22  Aligned_cols=81  Identities=19%  Similarity=0.254  Sum_probs=53.6

Q ss_pred             CCCe--eeccCCCcCcC--CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCC
Q 002861            2 TGDV--LPCFDASTMIL--PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDD   77 (873)
Q Consensus         2 ~gD~--i~~~d~~~~~~--~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~   77 (873)
                      .||+  +-..++..|+.  .++++++.+.+++  ....+|+++.+ ++         +|..|.+||+..+..     ..+
T Consensus       105 ~gD~P~i~~~~i~~li~~~~~~~~~l~~~~~~--~~~~~g~v~~~-~g---------~V~~~~ek~~~~~~~-----~~~  167 (456)
T PRK14356        105 NGDTPLVTTDTIDDFLKEAAGADLAFMTLTLP--DPGAYGRVVRR-NG---------HVAAIVEAKDYDEAL-----HGP  167 (456)
T ss_pred             eCCcccCCHHHHHHHHHHHhcCCEEEEEEEcC--CCCCceEEEEc-CC---------eEEEEEECCCCChHH-----hhh
Confidence            4666  22333444443  4678888888765  34689998774 55         799999999753211     012


Q ss_pred             CccceeeceeeecchHHHHHHh
Q 002861           78 GRALLDTGIIAVRGKAWEELVM   99 (873)
Q Consensus        78 ~~~l~~~Gi~~f~~~~~~~ll~   99 (873)
                      ..-++.+|+|+|+.+.+.+++.
T Consensus       168 ~~~~~~~GiY~f~~~~l~~ll~  189 (456)
T PRK14356        168 ETGEVNAGIYYLRLDAVESLLP  189 (456)
T ss_pred             hcCeEEEEEEEEEHHHHHHHHH
Confidence            2346899999999998777665

>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]

Probab=98.46  E-value=4.6e-07  Score=92.93  Aligned_cols=200  Identities=19%  Similarity=0.196  Sum_probs=121.9

Q ss_pred             CEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHc--------C-----------------
Q 002861          632 GLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM--------G-----------------  686 (873)
Q Consensus       632 G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~--------g-----------------  686 (873)
                      +-.+++.+-||.|+|+|||++..+|-+...++...+.+++......+..+|.+.        |                 
T Consensus        94 ~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmierhpdn~~a~mmGgf~GSflr~l~e~E~~~  173 (355)
T KOG1537|consen   94 TTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIERHPDNAVAEMMGGFLGSFLRALLESEAKV  173 (355)
T ss_pred             ceeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHHHHHhhChHHHHHHHHhhHHHHHHHHhCHhhhhh
Confidence            456777888999999999999999999988888888877666555555554421        1                 


Q ss_pred             CCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCC---cchHHHHHHHHHHHHhhcCHHH
Q 002861          687 TGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQ---VRLAHQVLQKVVTRYLQRDNLL  763 (873)
Q Consensus       687 ~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~---tr~t~~~l~~v~~~~~~~~~~~  763 (873)
                      .+-..+|......||+..++..+...+. +...+++.+      +.+++++.+..   |.+.+.+|+..+..     .+.
T Consensus       174 ~~~~ad~ilp~~~gg~~li~~lpP~dlg-~~~r~pw~~------~lk~i~viP~Fel~T~k~R~vLPt~yp~-----~d~  241 (355)
T KOG1537|consen  174 SGYHADNILPAIMGGFVLIRNLPPLDLG-KPLRFPWDK------DLKFILVIPDFELPTKKMRAVLPTEYPM-----VDH  241 (355)
T ss_pred             cCCCHHHhcccccCCeeeecCCCccccc-ccccCCCCc------cceEEEEeccccccchhhhhhcCccccc-----eee
Confidence            1223456667777777776655432210 112233333      45777777655   44455555543221     122


Q ss_pred             HHHHHHHHHHHHHHHHHHhcc-C-HHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc----CCceEEecCCCcccee
Q 002861          764 ISSIKRLTELAKNGRDALMNC-D-VDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP----YCCGYKLVGAGGGGFA  837 (873)
Q Consensus       764 ~~~~~~i~~~~~~~~~AL~~g-d-~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~----ga~G~klsGAGgGG~v  837 (873)
                      +-+++++.    .+..|+.++ | ......+|.+-.++  ... .-..|.++++.+.+.+    |.+|..+||||+  ++
T Consensus       242 V~NlqrlA----~LttAl~~~p~n~~L~y~~m~Dkvhq--PyR-a~LIPGl~~il~~~~p~t~pGl~GiclSGAGP--T~  312 (355)
T KOG1537|consen  242 VWNLQRLA----ALTTALLEGPDNVMLGYALMSDKVHQ--PYR-APLIPGLEAILKAALPATYPGLFGICLSGAGP--TA  312 (355)
T ss_pred             eecHHHHH----HHHHHHhcCCCchhhhhhhhhccccC--ccc-cccCccHHHHHHhhCcccCCceeeEEecCCCC--ee
Confidence            33445443    245667666 3 44555566654321  111 1235888999888874    789999999999  99


Q ss_pred             EEEeCCcchHHHHHHHH
Q 002861          838 LLLAKDAESATELRRML  854 (873)
Q Consensus       838 ~~l~~~~~~a~~i~~~L  854 (873)
                      ++++.+  .-++|.+.+
T Consensus       313 lAlate--nf~eI~~~m  327 (355)
T KOG1537|consen  313 LALATE--NFQEIGEKM  327 (355)
T ss_pred             EEEecC--cHHHHHHHH
Confidence            999874  344444333

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.43  E-value=5.3e-07  Score=105.02  Aligned_cols=65  Identities=12%  Similarity=0.241  Sum_probs=49.1

Q ss_pred             CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccceeeceeeecchHHHH
Q 002861           17 PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE   96 (873)
Q Consensus        17 ~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~   96 (873)
                      .++++++++.+++  ..+.+|+...|+++         +|.+|.+||+....+       +...++.+|+|+|+.+.+.+
T Consensus       122 ~~~~~~~~~~~~~--~~~~~g~~~~d~~g---------~v~~~~ek~~~~~~~-------~~~~~~~~Giy~f~~~~l~~  183 (450)
T PRK14360        122 SNADVTLLTARLP--NPKGYGRVFCDGNN---------LVEQIVEDRDCTPAQ-------RQNNRINAGIYCFNWPALAE  183 (450)
T ss_pred             cCCcEEEEEEecC--CCCCccEEEECCCC---------CEEEEEECCCCChhH-------hcCcEEEEEEEEEEHHHHHH
Confidence            5678888777654  34569999998877         799999999753221       12347899999999988888


Q ss_pred             HHh
Q 002861           97 LVM   99 (873)
Q Consensus        97 ll~   99 (873)
                      ++.
T Consensus       184 ~~~  186 (450)
T PRK14360        184 VLP  186 (450)
T ss_pred             HHh
Confidence            775

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.37  E-value=1.6e-06  Score=101.91  Aligned_cols=81  Identities=16%  Similarity=0.268  Sum_probs=56.0

Q ss_pred             CCCe--eeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCccc
Q 002861            2 TGDV--LPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAIL   75 (873)
Q Consensus         2 ~gD~--i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~   75 (873)
                      .||+  +...++.+|+.    .++++++...+..  ..+.+|+.+.|+++         +|.+|.+||..++-+      
T Consensus       106 ~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~--~p~~yg~~~~~~~g---------~V~~~~EKp~~~~~~------  168 (482)
T PRK14352        106 AGDVPLLDGETLADLVATHTAEGNAVTVLTTTLD--DPTGYGRILRDQDG---------EVTAIVEQKDATPSQ------  168 (482)
T ss_pred             eCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecC--CCCCCCEEEECCCC---------CEEEEEECCCCCHHH------
Confidence            4676  23445555554    4577777776543  45679999888777         799999999854211      


Q ss_pred             CCCccceeeceeeecchHHHHHHhh
Q 002861           76 DDGRALLDTGIIAVRGKAWEELVML  100 (873)
Q Consensus        76 ~~~~~l~~~Gi~~f~~~~~~~ll~~  100 (873)
                       ....++.||+|+|+.+.+.+++..
T Consensus       169 -~~~~~~~~Giy~f~~~~l~~~~~~  192 (482)
T PRK14352        169 -RAIREVNSGVYAFDAAVLRSALAR  192 (482)
T ss_pred             -hhcceEEEEEEEEEHHHHHHHHHh
Confidence             012357899999999998887763

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.37  E-value=2.4e-06  Score=99.51  Aligned_cols=78  Identities=18%  Similarity=0.233  Sum_probs=55.6

Q ss_pred             CCCe--eeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCccc
Q 002861            2 TGDV--LPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAIL   75 (873)
Q Consensus         2 ~gD~--i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~   75 (873)
                      .||.  +...|+.+|+.    +++++|+...+++  ..+.+|+...| ++         +| .+.+||..++-.      
T Consensus        96 ~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~--~~~~~g~v~~d-~g---------~v-~~~e~~~~~~~~------  156 (448)
T PRK14357         96 YGDVPLISENTLKRLIEEHNRKGADVTILVADLE--DPTGYGRIIRD-GG---------KY-RIVEDKDAPEEE------  156 (448)
T ss_pred             eCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC--CCCCcEEEEEc-CC---------eE-EEEECCCCChHH------
Confidence            4675  44556566655    5789999998875  45789999887 44         57 899988643211      


Q ss_pred             CCCccceeeceeeecchHHHHHHh
Q 002861           76 DDGRALLDTGIIAVRGKAWEELVM   99 (873)
Q Consensus        76 ~~~~~l~~~Gi~~f~~~~~~~ll~   99 (873)
                       ....++.+|+|+|+.+.+.+++.
T Consensus       157 -~~~~~~~~GiYv~~~~~l~~~~~  179 (448)
T PRK14357        157 -KKIKEINTGIYVFSGDFLLEVLP  179 (448)
T ss_pred             -hcCcEEEeEEEEEEHHHHHHHHH
Confidence             12347899999999998888775

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.34  E-value=2.4e-06  Score=99.46  Aligned_cols=196  Identities=15%  Similarity=0.194  Sum_probs=101.2

Q ss_pred             CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccceeeceeeecchHHHH
Q 002861           17 PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE   96 (873)
Q Consensus        17 ~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~   96 (873)
                      +++++++.+.+.  +....+|+++.+ ++         +|.+|.+||+.+.-       .....+..+|+|+|+.+.+.+
T Consensus       126 ~~~~~~i~~~~~--~~~~~~g~~~~~-~g---------~v~~~~ek~~~~~~-------~~~~~~~~~Giy~~~~~~l~~  186 (446)
T PRK14353        126 DGADVVVLGFRA--ADPTGYGRLIVK-GG---------RLVAIVEEKDASDE-------ERAITLCNSGVMAADGADALA  186 (446)
T ss_pred             cCCcEEEEEEEe--CCCCcceEEEEC-CC---------eEEEEEECCCCChH-------HhhceEEEEEEEEEEHHHHHH
Confidence            568888888875  344688988873 45         68999999975321       112247889999999988777


Q ss_pred             HHhhhcCCchhhhhhhccccchhhhHHHHhhc---c----c--ccccccccCCCc--hhHHhh---hhc----Ccce---
Q 002861           97 LVMLSCSCPPMVSELLKSGKEMSLYEDLVAAW---V----P--AKHDWLMLRPLG--KELVSK---LGK----QRMF---  155 (873)
Q Consensus        97 ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~---~----~--~~~~Y~~~~pvg--d~~~~~---l~~----~~i~---  155 (873)
                      +++.....      .  ...+++ ..|.+..+   +    .  ....+|.+  ++  +.|..+   +..    ..+.   
T Consensus       187 ~l~~~~~~------~--~~~~~~-~~d~~~~l~~~g~~v~~~~~~~~~~~~--I~t~~dl~~a~~~~~~~~~~~~~~~~~  255 (446)
T PRK14353        187 LLDRVGND------N--AKGEYY-LTDIVAIARAEGLRVAVVEAPEDEVRG--INSRAELAEAEAVWQARRRRAAMLAGV  255 (446)
T ss_pred             HHHhhccc------C--CCCcEe-HHHHHHHHHHCCCeEEEEecChhhccc--CCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            66532100      0  011111 12333222   1    1  22346766  54  222211   100    0011   


Q ss_pred             EEEecCceeEEecCcHHHHhhhccCCccccccceee-ecCCCcccccccceeEEeeeecCCceeCCCcEEE-EceeCCCe
Q 002861          156 SYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLC-SIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIY-DSNISSGI  233 (873)
Q Consensus       156 ~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~-~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve-~s~l~~~v  233 (873)
                      .+..|...++|.++       ...+...++....+- +..+..++.|...+.|.+|+|+.+|+|+++++|. +|+|++++
T Consensus       256 ~~~~~~~~~~~~~~-------~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~  328 (446)
T PRK14353        256 TLIAPETVFFSYDT-------VIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGA  328 (446)
T ss_pred             EeeCCCeEEECCce-------EECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCe
Confidence            11122221222110       000000110000000 0111122333344556678888888888888887 78888888


Q ss_pred             EECCCcEEeCcCCCCC
Q 002861          234 QIGSLSIVVGTNFPEE  249 (873)
Q Consensus       234 ~IG~~~iisg~~i~~~  249 (873)
                      .||.+|.|.++.|..+
T Consensus       329 ~Ig~~~~i~~~~i~~~  344 (446)
T PRK14353        329 KVGNFVEVKNAKLGEG  344 (446)
T ss_pred             EEcCceEEeceEECCC
Confidence            8888888888777665

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.30  E-value=2.4e-06  Score=98.91  Aligned_cols=199  Identities=14%  Similarity=0.174  Sum_probs=99.5

Q ss_pred             CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccceeeceeeecchHHHH
Q 002861           17 PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE   96 (873)
Q Consensus        17 ~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~   96 (873)
                      .++++++.+.+++  ....+|+...| ++         +|..|.+||...+       .+....++.+|+|+|+.+.+.+
T Consensus       117 ~~~~~~v~~~~~~--~~~~~g~v~~d-~g---------~v~~i~e~~~~~~-------~~~~~~~~~~Giyif~~~~l~~  177 (430)
T PRK14359        117 NDADIVMSVFHLA--DPKGYGRVVIE-NG---------QVKKIVEQKDANE-------EELKIKSVNAGVYLFDRKLLEE  177 (430)
T ss_pred             CCCCEEEEEEEcC--CCccCcEEEEc-CC---------eEEEEEECCCCCc-------ccccceEEEeEEEEEEHHHHHH
Confidence            5688888888764  34579987765 44         6899999986431       0011347899999999999887


Q ss_pred             HHhhhcCCchhhhhhhccccchhhhHHHHhhc---c----c--ccccccccCCCc--hhHHhh---hhc---Ccce----
Q 002861           97 LVMLSCSCPPMVSELLKSGKEMSLYEDLVAAW---V----P--AKHDWLMLRPLG--KELVSK---LGK---QRMF----  155 (873)
Q Consensus        97 ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~---~----~--~~~~Y~~~~pvg--d~~~~~---l~~---~~i~----  155 (873)
                      ++..-..      +..  ..++.+ .|....+   +    .  ....||.+  ++  +.|+.+   |..   ..++    
T Consensus       178 ~~~~~~~------~~~--~~e~~l-~d~i~~l~~~g~~v~~~~~~~~~w~d--I~t~~dl~~a~~~l~~~~~~~~~~~g~  246 (430)
T PRK14359        178 YLPLLKN------QNA--QKEYYL-TDIIALAIEKGETIKAVFVDEENFMG--VNSKFELAKAEEIMQERIKKNAMKQGV  246 (430)
T ss_pred             HHHhcCc------ccc--cCceeh-hhHHHHHHHcCCeEEEEEcCCCEEeC--CCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7642110      000  111111 1232222   1    1  12358877  64  333333   110   0000    


Q ss_pred             EEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEE
Q 002861          156 SYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQI  235 (873)
Q Consensus       156 ~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~I  235 (873)
                      ....|+.-|.+-+..-+ =...+.....++....+.++.+.. +|.+.+++|.+|+++++++|+++++|++|+|+.++.|
T Consensus       247 ~~~~~~~~~~~~~~~i~-g~~~ig~~~~I~~~~~i~~~~i~~-~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i  324 (430)
T PRK14359        247 IMRLPETIYIESGVEFE-GECELEEGVRILGKSKIENSHIKA-HSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVET  324 (430)
T ss_pred             EEecCCeeEECCCcEEc-CceEECCCCEECCCeEEEeeEECC-CCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEE
Confidence            01222232322111000 001111111222222222333333 4444456777888888888888888888888888765


Q ss_pred             CCCcEEeCcCCCC
Q 002861          236 GSLSIVVGTNFPE  248 (873)
Q Consensus       236 G~~~iisg~~i~~  248 (873)
                      +... |.++.+..
T Consensus       325 ~~~~-~~~~~i~~  336 (430)
T PRK14359        325 KNAK-LNGVKAGH  336 (430)
T ss_pred             cccE-eccccccc
Confidence            5533 24444433

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=98.27  E-value=3.5e-06  Score=98.12  Aligned_cols=80  Identities=16%  Similarity=0.310  Sum_probs=53.7

Q ss_pred             CCCe--eeccCCCcCcC--CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCC
Q 002861            2 TGDV--LPCFDASTMIL--PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDD   77 (873)
Q Consensus         2 ~gD~--i~~~d~~~~~~--~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~   77 (873)
                      .||+  +...++..++.  ...++++++.+++  ..+.+|++..|+++         +|.+|.+||...+-+       .
T Consensus        98 ~~D~p~i~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~g~v~~d~~g---------~v~~~~ek~~~~~~~-------~  159 (451)
T TIGR01173        98 YGDVPLISAETLERLLEAHRQNGITLLTAKLP--DPTGYGRIIRENDG---------KVTAIVEDKDANAEQ-------K  159 (451)
T ss_pred             ECCcCCcCHHHHHHHHHHHhhCCEEEEEEecC--CCCCCCEEEEcCCC---------CEEEEEEcCCCChHH-------h
Confidence            4666  22344444443  2346777777764  45669999988776         789999998753211       1


Q ss_pred             CccceeeceeeecchHHHHHHh
Q 002861           78 GRALLDTGIIAVRGKAWEELVM   99 (873)
Q Consensus        78 ~~~l~~~Gi~~f~~~~~~~ll~   99 (873)
                      ...++.+|+|+|+.+.+.+++.
T Consensus       160 ~~~~~~~G~y~~~~~~l~~~l~  181 (451)
T TIGR01173       160 AIKEINTGVYVFDGAALKRWLP  181 (451)
T ss_pred             cCcEEEEEEEEEeHHHHHHHHH
Confidence            2347899999999999877765

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=6.8e-06  Score=86.16  Aligned_cols=215  Identities=14%  Similarity=0.175  Sum_probs=121.4

Q ss_pred             CCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCC
Q 002861            3 GDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDG   78 (873)
Q Consensus         3 gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~   78 (873)
                      .||.-.|-...|..    .++-.|..+..++.+.|+|||..+.|++..        +|..+.+||+.=-           
T Consensus       115 aDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~--------evlHYveKPsTfv-----------  175 (407)
T KOG1460|consen  115 ADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTG--------EVLHYVEKPSTFV-----------  175 (407)
T ss_pred             cceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCcC--------ceEEeecCcchhh-----------
Confidence            35444444455555    778899999999999999999999997742        7899999998642           


Q ss_pred             ccceeeceeeecchHHHHHHhhhcCC-chh---hhhhh---ccc-cchhhhHHHHhhccc-------cccccccc-CCCc
Q 002861           79 RALLDTGIIAVRGKAWEELVMLSCSC-PPM---VSELL---KSG-KEMSLYEDLVAAWVP-------AKHDWLML-RPLG  142 (873)
Q Consensus        79 ~~l~~~Gi~~f~~~~~~~ll~~~~~~-~d~---g~d~~---~~~-~~~~~y~df~~~~~~-------~~~~Y~~~-~pvg  142 (873)
                      .-.++.|+|+|+++.+...-. -+.. .|.   -+|+-   +.| -.+.+--|.+.+|..       .+.+||+- ...|
T Consensus       176 Sd~InCGvYlF~~eif~~i~~-v~~q~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtag  254 (407)
T KOG1460|consen  176 SDIINCGVYLFTPEIFNAIAE-VYRQRQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAG  254 (407)
T ss_pred             hcccceeEEEecHHHHHHHHH-HHHHHHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhcccc
Confidence            226789999999987644221 1100 110   01110   001 123333477777742       34577855 1124


Q ss_pred             hhHHhh---hhcCcce---EEEec-Cce-------eEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEE
Q 002861          143 KELVSK---LGKQRMF---SYCAY-ELL-------FLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVL  208 (873)
Q Consensus       143 d~~~~~---l~~~~i~---~~~~p-~a~-------F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~  208 (873)
                      .+++..   |+..+-.   .++.. ++.       |+|=.       ..+.-.-.+|..     ..++....+..|..++
T Consensus       255 sal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPs-------akvhptAkiGPN-----VSIga~vrvg~GvRl~  322 (407)
T KOG1460|consen  255 SALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPS-------AKVHPTAKIGPN-----VSIGANVRVGPGVRLR  322 (407)
T ss_pred             ceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCc-------ceeCCccccCCC-----ceecCCceecCCceee
Confidence            322211   1111000   11111 111       22200       000000011111     1122234466778888


Q ss_pred             eeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861          209 SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      +|++-.++.|.++++|-||+|+=..+||+=++|.+.++..+
T Consensus       323 ~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s  363 (407)
T KOG1460|consen  323 ESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPS  363 (407)
T ss_pred             eeeeccCcEeeccceEEeeeecccccccceeeecccccccC
Confidence            88888888888888888888888888888888888776543

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=3.3e-06  Score=91.72  Aligned_cols=74  Identities=23%  Similarity=0.216  Sum_probs=57.2

Q ss_pred             hhccCCccccccceeeecCCCcccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861          176 HLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       176 ~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      +++.+..+++-...++.|..+.+|.|.+.+.|.+|+|.++|+||+|+.||+|+|+.+++||++|.|++|+|..+
T Consensus       335 ~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig~~  408 (433)
T KOG1462|consen  335 SIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIGPG  408 (433)
T ss_pred             hccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeeeeEecCC
Confidence            44455556665556667777777777788888888888888888888888888888888888888888888776

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.10  E-value=1.9e-05  Score=92.30  Aligned_cols=65  Identities=20%  Similarity=0.282  Sum_probs=47.6

Q ss_pred             CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccceeeceeeecchHHHH
Q 002861           17 PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE   96 (873)
Q Consensus        17 ~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~   96 (873)
                      .++++|++..+.+  ....+|++..|+++         +|..|.+||...+       .++...++.+|+|+|+.+.+.+
T Consensus       121 ~~~~~t~~~~~~~--~~~~~g~v~~d~~~---------~V~~~~ek~~~~~-------~~~~~~~~~~Giy~f~~~~l~~  182 (458)
T PRK14354        121 HKAAATILTAIAE--NPTGYGRIIRNENG---------EVEKIVEQKDATE-------EEKQIKEINTGTYCFDNKALFE  182 (458)
T ss_pred             cCCceEEEEEEcC--CCCCceEEEEcCCC---------CEEEEEECCCCCh-------HHhcCcEEEEEEEEEEHHHHHH
Confidence            4688888887754  34568998888776         7999999985321       0113457899999999988777


Q ss_pred             HHh
Q 002861           97 LVM   99 (873)
Q Consensus        97 ll~   99 (873)
                      .+.
T Consensus       183 ~l~  185 (458)
T PRK14354        183 ALK  185 (458)
T ss_pred             HHH
Confidence            665

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=98.01  E-value=4.2e-06  Score=89.98  Aligned_cols=77  Identities=21%  Similarity=0.310  Sum_probs=64.6

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeC-CCCCcccccccccccceeecCCHHHHhhcCccc
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAA-KDGILNENYALSLVDDLLQKPNVDELAKNHAIL   75 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d-~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~   75 (873)
                      +.||+++.+|+..|+.    +++++|+++.+++.+..+.+||+.+| +++         +|.+|.+||..+.        
T Consensus       109 ~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g---------~v~~~~Ekp~~~~--------  171 (257)
T cd06428         109 LNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTG---------EVLHYVEKPETFV--------  171 (257)
T ss_pred             EcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCC---------eEEEEEeCCCCcc--------
Confidence            4699999999998887    67999999999888888999999998 556         7999999997542        


Q ss_pred             CCCccceeeceeeecchHHHHH
Q 002861           76 DDGRALLDTGIIAVRGKAWEEL   97 (873)
Q Consensus        76 ~~~~~l~~~Gi~~f~~~~~~~l   97 (873)
                         ..++.+|+|+|+.+.+..+
T Consensus       172 ---~~~~~~Giyi~~~~~~~~i  190 (257)
T cd06428         172 ---SDLINCGVYLFSPEIFDTI  190 (257)
T ss_pred             ---cceEEEEEEEECHHHHHHH
Confidence               3379999999999987544

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=97.96  E-value=3.5e-06  Score=89.73  Aligned_cols=80  Identities=21%  Similarity=0.368  Sum_probs=66.7

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      +.||+++.+|+..|+.    .++++++.....+.+..+.||+..+|+++         +|.+|.|||..+..        
T Consensus       109 ~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~---------~V~~~~EKP~~~~~--------  171 (248)
T PF00483_consen  109 LNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDEDG---------RVIRIVEKPDNPNA--------  171 (248)
T ss_dssp             ETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETTS---------EEEEEEESCSSHSH--------
T ss_pred             EeccccccchhhhHHHhhhccccccccccccccccccccceeeeeccce---------eEEEEeccCccccc--------
Confidence            4799999999999987    55655555666667789999999999877         89999999987742        


Q ss_pred             CCccceeeceeeecchHHHHHHh
Q 002861           77 DGRALLDTGIIAVRGKAWEELVM   99 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~~ll~   99 (873)
                        ..++++|+|+|+.+.+..++.
T Consensus       172 --~~~~~~G~Y~~~~~~~~~~~~  192 (248)
T PF00483_consen  172 --SNLINTGIYIFKPEIFDFLLE  192 (248)
T ss_dssp             --SSEEEEEEEEEETHHHHHHHH
T ss_pred             --ceeccCceEEEcchHHHHHhh
Confidence              568999999999999888865

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=97.90  E-value=2.1e-05  Score=68.85  Aligned_cols=51  Identities=16%  Similarity=0.187  Sum_probs=33.9

Q ss_pred             cccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861          199 SDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       199 ~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      +.|..++.|.+|+|.+++.|++++.|++|+|++++.||.++.|.++++.++
T Consensus        23 ~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~   73 (81)
T cd04652          23 CKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSG   73 (81)
T ss_pred             CEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCC
Confidence            334445556667777777777777777777777777777777777766665

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=97.90  E-value=2.6e-05  Score=71.91  Aligned_cols=69  Identities=20%  Similarity=0.304  Sum_probs=57.4

Q ss_pred             eeeecCCCcccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          189 HLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       189 ~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      .+.++.+..++.|. ++.|.+|++++++.|++++.|++|+|++++.||++|.|.++++.++          +.|++++.+
T Consensus         9 ~i~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~----------~~Ig~~~~v   77 (104)
T cd04651           9 EVKNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKN----------VVIPDGVVI   77 (104)
T ss_pred             EEEeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCC----------CEECCCCEE
Confidence            34555555544444 7889999999999999999999999999999999999999999887          888888754

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=97.83  E-value=4.1e-05  Score=80.49  Aligned_cols=73  Identities=23%  Similarity=0.241  Sum_probs=62.7

Q ss_pred             CCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCC
Q 002861            2 TGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDD   77 (873)
Q Consensus         2 ~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~   77 (873)
                      -||-|+.-+.+..+.    .++|+++++.+|+  ..++|||..+|+++         +|....|||..|+          
T Consensus       106 LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~--dP~rfGV~e~d~~~---------~v~~l~EKP~~P~----------  164 (286)
T COG1209         106 LGDNIFQDGLSELLEHFAEEGSGATILLYEVD--DPSRYGVVEFDEDG---------KVIGLEEKPKEPK----------  164 (286)
T ss_pred             ecCceeccChHHHHHHHhccCCCcEEEEEEcC--CcccceEEEEcCCC---------cEEEeEECCCCCC----------
Confidence            488888888877776    5689999999887  89999999999988         7999999998873          


Q ss_pred             CccceeeceeeecchHHHH
Q 002861           78 GRALLDTGIIAVRGKAWEE   96 (873)
Q Consensus        78 ~~~l~~~Gi~~f~~~~~~~   96 (873)
                       .-++.+|+|+|+..+.+.
T Consensus       165 -SNlAvtGlY~~d~~Vf~~  182 (286)
T COG1209         165 -SNLAVTGLYFYDPSVFEA  182 (286)
T ss_pred             -CceeEEEEEEeChHHHHH
Confidence             569999999999987653

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=97.75  E-value=2.7e-05  Score=89.53  Aligned_cols=233  Identities=13%  Similarity=0.155  Sum_probs=134.6

Q ss_pred             CCCCeeeccCCCcCcC---------CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceee---cCCHHHH
Q 002861            1 MTGDVLPCFDASTMIL---------PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQ---KPNVDEL   68 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~---------~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~---KPs~~~l   68 (873)
                      .+|||+-.|+.+.++.         +++=.|.+=.+.+--..+++=|+.+|+...        ++..|..   +-..-++
T Consensus       132 Vsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~~~~avd~~T~--------~ll~yq~~~~~~~~~~l  203 (673)
T KOG1461|consen  132 VSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVVIAVDSRTS--------RLLHYQKCVREKHDIQL  203 (673)
T ss_pred             EeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCcceEEEEcCCcc--------eEEeehhhccccccccc
Confidence            3799999999999887         556677777776644567788899998752        2232221   0101111


Q ss_pred             hhcCccc-CC----CccceeeceeeecchHHHHHHhhhcCC----chhhhhhhcc-------------cc----------
Q 002861           69 AKNHAIL-DD----GRALLDTGIIAVRGKAWEELVMLSCSC----PPMVSELLKS-------------GK----------  116 (873)
Q Consensus        69 ~~~~a~~-~~----~~~l~~~Gi~~f~~~~~~~ll~~~~~~----~d~g~d~~~~-------------~~----------  116 (873)
                      .. ..+. .+    ..-|+|.+|-+-|+.++.  |.+|.+|    .||.+-++.+             ++          
T Consensus       204 ~~-sl~d~~~~v~vr~DL~dc~IdIcS~~V~s--LF~dNFDyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~  280 (673)
T KOG1461|consen  204 DL-SLFDSNDEVEVRNDLLDCQIDICSPEVLS--LFTDNFDYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLR  280 (673)
T ss_pred             CH-HHhcCCCcEEEEccCCCceeeEecHhHHH--HhhhcccceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccH
Confidence            10 0011 11    133778888887777663  4445433    4444433321             11          


Q ss_pred             chhhh-HHHHhhcc-c--ccccccccCCCc---hhHHhhhhcCcceEEEecCceeE-EecCcHHHHhhhccCCccccccc
Q 002861          117 EMSLY-EDLVAAWV-P--AKHDWLMLRPLG---KELVSKLGKQRMFSYCAYELLFL-HFGTSSEVLDHLSGDVSGLVGRR  188 (873)
Q Consensus       117 ~~~~y-~df~~~~~-~--~~~~Y~~~~pvg---d~~~~~l~~~~i~~~~~p~a~F~-h~gt~~e~l~~l~~~~~~l~~~~  188 (873)
                      .|+++ .|+++.|. |  +...+..+++..   ...|.. ....+.+.+.-.+.++ -.||             .++...
T Consensus       281 syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~-~dv~~~~~~~v~~~~~ig~gT-------------~Ig~g~  346 (673)
T KOG1461|consen  281 SYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKS-PDVVLSHSVIVGANVVIGAGT-------------KIGSGS  346 (673)
T ss_pred             HHHHHHHHHHHhhcccccccccCCCCceeeecccccccC-ccceehhhccccceEEecccc-------------cccCCC
Confidence            11111 25555553 2  222222222210   111110 0000000011112222 1222             345556


Q ss_pred             eeeecCCCcccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEE-eCcCCCCCCCCCccCccceeeCCCee
Q 002861          189 HLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIV-VGTNFPEEAGSTAEDSFRFMLPDRHC  267 (873)
Q Consensus       189 ~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~ii-sg~~i~~~~~~~~~~~~~~~iP~~~~  267 (873)
                      .+.+|.++.+|+|.+...|.+|.|..+|+|+.||.|+||+|.++|+|+++|+| -||++..+          +++|++..
T Consensus       347 ~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~----------VVv~~~~~  416 (673)
T KOG1461|consen  347 KISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFG----------VVVGRNFV  416 (673)
T ss_pred             eeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeee----------eEeCCCcc
Confidence            78888888888899998899999999999999999999999999999999999 78887665          78887774


Q ss_pred             e
Q 002861          268 L  268 (873)
Q Consensus       268 i  268 (873)
                      +
T Consensus       417 l  417 (673)
T KOG1461|consen  417 L  417 (673)
T ss_pred             c
Confidence            3

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=97.62  E-value=0.00012  Score=63.50  Aligned_cols=58  Identities=22%  Similarity=0.377  Sum_probs=48.5

Q ss_pred             cccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          201 IAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       201 i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      |..++.+.+|+|++++.|++++.|++|+|++++.||++|.|.++++..+          +.|.++..+
T Consensus         8 I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~----------~~i~~~~~i   65 (79)
T cd03356           8 IGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN----------AVIGENVRV   65 (79)
T ss_pred             ECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC----------CEECCCCEE
Confidence            4456778889999999999999999999999999999999999888776          666666533

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=97.58  E-value=0.00013  Score=63.82  Aligned_cols=59  Identities=14%  Similarity=0.160  Sum_probs=51.8

Q ss_pred             ccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          200 DIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       200 ~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      .|..++.|.+|+|++++.|++++.|++|+|++++.||++|.|.++.+.++          +.|.++..+
T Consensus         7 ~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~----------~~i~~~~~v   65 (81)
T cd04652           7 QVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG----------AVIGEKCKL   65 (81)
T ss_pred             EECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC----------CEECCCCEE
Confidence            35566778899999999999999999999999999999999999998776          778777644

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=97.54  E-value=0.00017  Score=78.66  Aligned_cols=106  Identities=13%  Similarity=0.127  Sum_probs=76.6

Q ss_pred             cCcceEEEec-CceeEEecCcHHHHh--------hhccCCcccc---c--cceeeecCCCcccccccceeEEeeeecCCc
Q 002861          151 KQRMFSYCAY-ELLFLHFGTSSEVLD--------HLSGDVSGLV---G--RRHLCSIPATTVSDIAASAVVLSSKIAHGV  216 (873)
Q Consensus       151 ~~~i~~~~~p-~a~F~h~gt~~e~l~--------~l~~~~~~l~---~--~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v  216 (873)
                      +.|++.+.+| .+-|+|--|..-|++        .|++.+..+-   -  .-+..++.+...+.|...+.|..|+|+++|
T Consensus       279 ~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~~l~~e~~~~k~~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC  358 (433)
T KOG1462|consen  279 RIKCYAYILPTESLFVRANTLLSYMEINRDKKLKKLCSEAKFVKNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNC  358 (433)
T ss_pred             ceeeeEEEccCccceEEecchHHHHhhhHHHHHHHhccccccccchhhheeccchhhccCCCceecccceeeeeeecCCc
Confidence            3556666777 466777766655554        1222221110   0  112245666666777778889999999999


Q ss_pred             eeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCe
Q 002861          217 SIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRH  266 (873)
Q Consensus       217 ~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~  266 (873)
                      .||+.+.|-+|.|++||.||.+|.|.+|||..+          ..|-+|.
T Consensus       359 ~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~g----------A~Ig~gs  398 (433)
T KOG1462|consen  359 DIGERVKVANSILMDNVVVGDGVNIENSIIGMG----------AQIGSGS  398 (433)
T ss_pred             cccCCcEEEeeEeecCcEecCCcceecceeccc----------ceecCCC
Confidence            999999999999999999999999999999887          6676766

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=97.46  E-value=7.5e-05  Score=78.99  Aligned_cols=75  Identities=19%  Similarity=0.347  Sum_probs=60.6

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCC-CCCcccccccccccceeecCCHHHHhhcCccc
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAK-DGILNENYALSLVDDLLQKPNVDELAKNHAIL   75 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~-~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~   75 (873)
                      +.||+++.+|+..|+.    +++++|++..|.+.  .+.+|++.+|+ ++         +|.+|.+||..+.        
T Consensus       107 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~~~---------~v~~~~ekp~~~~--------  167 (233)
T cd06425         107 LNSDVICDFPLAELLDFHKKHGAEGTILVTKVED--PSKYGVVVHDENTG---------RIERFVEKPKVFV--------  167 (233)
T ss_pred             EeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC--ccccCeEEEcCCCC---------EEEEEEECCCCCC--------
Confidence            3699999999888877    68999999988753  47899999987 55         7999999997542        


Q ss_pred             CCCccceeeceeeecchHHHHH
Q 002861           76 DDGRALLDTGIIAVRGKAWEEL   97 (873)
Q Consensus        76 ~~~~~l~~~Gi~~f~~~~~~~l   97 (873)
                         ..++++|+|+|+.+.+..+
T Consensus       168 ---~~~~~~Giyi~~~~~l~~l  186 (233)
T cd06425         168 ---GNKINAGIYILNPSVLDRI  186 (233)
T ss_pred             ---CCEEEEEEEEECHHHHHhc
Confidence               3368999999999987543

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=97.43  E-value=0.00029  Score=60.94  Aligned_cols=59  Identities=15%  Similarity=0.216  Sum_probs=49.8

Q ss_pred             ccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          200 DIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       200 ~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      .|..++.|.+|++++++.|+++++|.+|+|++++.||++|.|.++.+..+          +.|++++.+
T Consensus         7 ~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~----------~~i~~~~~i   65 (79)
T cd05787           7 SIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADG----------AVIGKGCTI   65 (79)
T ss_pred             EECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCC----------CEECCCCEE
Confidence            35556778889999999999999999999999999999999999888776          777776643

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=97.36  E-value=0.0006  Score=62.84  Aligned_cols=57  Identities=19%  Similarity=0.257  Sum_probs=49.5

Q ss_pred             cccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          201 IAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       201 i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      |..++.|.+|+|+++|.|+ ++.|++|+|++++.||++|.|.++.+..+          +.|+++..+
T Consensus         4 i~~~~~i~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~----------~~Ig~~~~i   60 (104)
T cd04651           4 IGRRGEVKNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPN----------VGIGRNAVI   60 (104)
T ss_pred             ecCCCEEEeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCC----------CEECCCCEE
Confidence            4567788999999999999 99999999999999999999999998776          777777654

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=97.33  E-value=0.00045  Score=59.95  Aligned_cols=58  Identities=24%  Similarity=0.272  Sum_probs=47.8

Q ss_pred             ecCCCcccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeC-cCCCCC
Q 002861          192 SIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG-TNFPEE  249 (873)
Q Consensus       192 ~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg-~~i~~~  249 (873)
                      ++.+..++.|..++.+.+|++.+++.|++++.|.+|+|++++.||.++.|.+ +.+.++
T Consensus        16 ~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~   74 (79)
T cd03356          16 NSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDD   74 (79)
T ss_pred             CCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCC
Confidence            3444444556678889999999999999999999999999999999999987 665444

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase

Probab=97.17  E-value=0.00019  Score=77.21  Aligned_cols=80  Identities=20%  Similarity=0.184  Sum_probs=59.2

Q ss_pred             CCCCeeecc---CCCcCcC----CCCceEEEEEecCccccccceEEEeCC---C-CCcccccccccccceeecCCHHHHh
Q 002861            1 MTGDVLPCF---DASTMIL----PEDASCIITVPITLDIASNHGVIVAAK---D-GILNENYALSLVDDLLQKPNVDELA   69 (873)
Q Consensus         1 ~~gD~i~~~---d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~---~-~~~~~~~~~~~v~~fl~KPs~~~l~   69 (873)
                      +.||+++..   |+..|+.    +++++ ++..+++.+..+.+||..+|.   + +         +|.+|.+||+.++  
T Consensus       125 ~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~---------~v~~~~Ekp~~~~--  192 (260)
T TIGR01099       125 ILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLY---------EIKDMVEKPKPEE--  192 (260)
T ss_pred             EeccceecCCcHHHHHHHHHHHHhCCCE-EEEEECChhhcccCceEEeccccCCce---------eEEEEEECCCCCC--
Confidence            468999876   5888877    56776 555677777889999999873   2 3         6999999996432  


Q ss_pred             hcCcccCCCccceeeceeeecchHHHHHHh
Q 002861           70 KNHAILDDGRALLDTGIIAVRGKAWEELVM   99 (873)
Q Consensus        70 ~~~a~~~~~~~l~~~Gi~~f~~~~~~~ll~   99 (873)
                             +...++.+|+|+|+.+.+..+..
T Consensus       193 -------~~~~~~~~Giyi~~~~~~~~l~~  215 (260)
T TIGR01099       193 -------APSNLAIVGRYVLTPDIFDLLEE  215 (260)
T ss_pred             -------CCCceEEEEEEECCHHHHHHHHh
Confidence                   12347899999999987666543

Built to distinquish between the highly similar genes galU and galF

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=97.17  E-value=0.0011  Score=57.72  Aligned_cols=56  Identities=18%  Similarity=0.089  Sum_probs=46.3

Q ss_pred             cceeE-EeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          203 ASAVV-LSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       203 ~~~~V-~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      .++.| -+++|+++|+|++++.|++|+|+.+++|++++.|.++++.++          +.|.++..+
T Consensus        10 ~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~----------~~v~~~~~~   66 (80)
T cd05824          10 KTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN----------STVGRWTRL   66 (80)
T ss_pred             CCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC----------CEECCCcEE
Confidence            34434 368899999999999999999999999999999999998876          777776533

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase

Probab=97.07  E-value=0.00039  Score=74.72  Aligned_cols=72  Identities=17%  Similarity=0.253  Sum_probs=57.2

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      +.||+++.+|+..|+.    .++++|+++++    ..+.+||+.+|+ +         +|..|.+||..+          
T Consensus       124 ~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~----~~~~yG~v~~d~-~---------~V~~~~Ekp~~~----------  179 (254)
T TIGR02623       124 TYGDGVADIDIKALIAFHRKHGKKATVTAVQ----PPGRFGALDLEG-E---------QVTSFQEKPLGD----------  179 (254)
T ss_pred             EeCCeEecCCHHHHHHHHHHcCCCEEEEEec----CCCcccEEEECC-C---------eEEEEEeCCCCC----------
Confidence            3699999999999988    57999988764    346799999884 4         689999999532          


Q ss_pred             CCccceeeceeeecchHHHHHHh
Q 002861           77 DGRALLDTGIIAVRGKAWEELVM   99 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~~ll~   99 (873)
                        ..++.+|+|+|+.+.+ +++.
T Consensus       180 --~~~i~~Giyi~~~~il-~~l~  199 (254)
T TIGR02623       180 --GGWINGGFFVLNPSVL-DLID  199 (254)
T ss_pred             --CCeEEEEEEEEcHHHH-hhcc
Confidence              2368999999999877 5554

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional

Probab=97.00  E-value=0.00084  Score=73.63  Aligned_cols=73  Identities=18%  Similarity=0.194  Sum_probs=58.2

Q ss_pred             CCCee-eccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            2 TGDVL-PCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         2 ~gD~i-~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      .||++ +.+|++.|+.    .++++|+++.+++  ..+.+||...|+++         +|..|.|||..+          
T Consensus       109 ~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~--~p~~yGvv~~d~~g---------~v~~i~EKP~~p----------  167 (292)
T PRK15480        109 LGDNIFYGHDLPKLMEAAVNKESGATVFAYHVN--DPERYGVVEFDQNG---------TAISLEEKPLQP----------  167 (292)
T ss_pred             ECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcC--CcccCcEEEECCCC---------cEEEEEECCCCC----------
Confidence            47865 5889888876    5689999998874  46789999999877         799999999644          


Q ss_pred             CCccceeeceeeecchHHHH
Q 002861           77 DGRALLDTGIIAVRGKAWEE   96 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~~   96 (873)
                       ...++.+|+|+|+.+++..
T Consensus       168 -~s~~a~~GiY~~~~~v~~~  186 (292)
T PRK15480        168 -KSNYAVTGLYFYDNDVVEM  186 (292)
T ss_pred             -CCCEEEEEEEEEChHHHHH
Confidence             2447899999999986543

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=96.90  E-value=0.0011  Score=75.50  Aligned_cols=104  Identities=18%  Similarity=0.200  Sum_probs=67.5

Q ss_pred             cceEEEecCceeEEecCcHHHHhh---hc-cCCc-ccc-cc-ceeeecCCCcccccccceeEEeeeecCCceeCCCcEEE
Q 002861          153 RMFSYCAYELLFLHFGTSSEVLDH---LS-GDVS-GLV-GR-RHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIY  225 (873)
Q Consensus       153 ~i~~~~~p~a~F~h~gt~~e~l~~---l~-~~~~-~l~-~~-~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve  225 (873)
                      ++..+... +.+.-+||..+|+..   +. .+.. .+. .. .....+.+.++..|..++.|.+|+|+++|.|+.  .|+
T Consensus       231 ~v~~~~~~-g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~Ig~~~~I~~--~v~  307 (380)
T PRK05293        231 KLYAYPFK-GYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVKNSLVVEGCVVYG--TVE  307 (380)
T ss_pred             eEEEEEeC-CEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEecCEECCCCEEcc--eec
Confidence            34444443 567778999988762   11 1111 010 00 111112222334455677788899999999963  578


Q ss_pred             EceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeee
Q 002861          226 DSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLW  269 (873)
Q Consensus       226 ~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~  269 (873)
                      +|+|+++++||++|.|.+++|..+          +.|.+++.+.
T Consensus       308 ~s~ig~~~~I~~~~~i~~svi~~~----------~~i~~~~~i~  341 (380)
T PRK05293        308 HSVLFQGVQVGEGSVVKDSVIMPG----------AKIGENVVIE  341 (380)
T ss_pred             ceEEcCCCEECCCCEEECCEEeCC----------CEECCCeEEe
Confidence            999999999999999999999776          7777777553

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=96.85  E-value=0.0012  Score=68.53  Aligned_cols=76  Identities=25%  Similarity=0.388  Sum_probs=62.8

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      +.||+++..|+.+++.    +++++|++..+.+  ..+.+|++.+|+++         +|.+|.+||..+.         
T Consensus       102 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~d~~~---------~v~~~~ek~~~~~---------  161 (217)
T cd04181         102 VNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DPSRYGVVELDDDG---------RVTRFVEKPTLPE---------  161 (217)
T ss_pred             EECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--CCCcceEEEEcCCC---------cEEEEEECCCCCC---------
Confidence            3699999999988875    7889999998877  67889999999876         7999999997652         


Q ss_pred             CCccceeeceeeecchHHHHHHh
Q 002861           77 DGRALLDTGIIAVRGKAWEELVM   99 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~~ll~   99 (873)
                        ....++|+|+|+.+.+ +++.
T Consensus       162 --~~~~~~Giy~~~~~~~-~~l~  181 (217)
T cd04181         162 --SNLANAGIYIFEPEIL-DYIP  181 (217)
T ss_pred             --CCEEEEEEEEECHHHH-Hhhh
Confidence              3478999999999876 5554

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=96.81  E-value=0.016  Score=64.74  Aligned_cols=65  Identities=26%  Similarity=0.294  Sum_probs=47.7

Q ss_pred             CCceEEEEEecCccccccceEEEeCCCCCcccccccccccceee-cCCHHHHhhcCcccCCCccceeeceeeecchHHHH
Q 002861           18 EDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQ-KPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE   96 (873)
Q Consensus        18 ~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~-KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~   96 (873)
                      ++++|+++..  ++.-+.+|=++.+.++         .|..+.| |=..++-+        .---+.+|+|.|+.+.|.+
T Consensus       125 ~~~~tvLt~~--~~dP~GYGRIvr~~~g---------~V~~IVE~KDA~~eek--------~I~eiNtGiy~f~~~~L~~  185 (460)
T COG1207         125 GAAATVLTAE--LDDPTGYGRIVRDGNG---------EVTAIVEEKDASEEEK--------QIKEINTGIYAFDGAALLR  185 (460)
T ss_pred             CCceEEEEEE--cCCCCCcceEEEcCCC---------cEEEEEEcCCCCHHHh--------cCcEEeeeEEEEcHHHHHH
Confidence            6888888874  5567789999998887         5666664 54444422        2335778999999999999


Q ss_pred             HHhhh
Q 002861           97 LVMLS  101 (873)
Q Consensus        97 ll~~~  101 (873)
                      +|..-
T Consensus       186 ~L~~l  190 (460)
T COG1207         186 ALPKL  190 (460)
T ss_pred             HHHHh
Confidence            99854

>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=96.77  E-value=0.00081  Score=70.40  Aligned_cols=84  Identities=14%  Similarity=0.125  Sum_probs=62.1

Q ss_pred             CCCCeeeccCCCcCcC---------CCCceEEEEEecCccc----cccceEEEeCCC-CCcccccccccccceeecCCHH
Q 002861            1 MTGDVLPCFDASTMIL---------PEDASCIITVPITLDI----ASNHGVIVAAKD-GILNENYALSLVDDLLQKPNVD   66 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~---------~~a~vtv~a~p~~~~~----a~~hGV~~~d~~-~~~~~~~~~~~v~~fl~KPs~~   66 (873)
                      +.||+|+.+|+..|+.         +++++|++..+++...    +..+||.++|++ +         +|..|.+||..+
T Consensus       110 ~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~---------~v~~~~ekp~~~  180 (217)
T cd04197         110 VSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTS---------RLLHYEELPGSK  180 (217)
T ss_pred             EeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCCCceEEEEcCCCC---------cEEEEecccCCC
Confidence            4799999999998888         2799999988886654    445899999876 5         799999999886


Q ss_pred             HHhhc---CcccC------CCccceeeceeeecchH
Q 002861           67 ELAKN---HAILD------DGRALLDTGIIAVRGKA   93 (873)
Q Consensus        67 ~l~~~---~a~~~------~~~~l~~~Gi~~f~~~~   93 (873)
                      +....   ..+..      =..-|+++|+|+|+.++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~v  216 (217)
T cd04197         181 YRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDV  216 (217)
T ss_pred             CccccccCHHHhcCCCcEEEECCceecCEEEeCCCC
Confidence            52110   00100      12458999999999875

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

Probab=96.77  E-value=0.0012  Score=71.81  Aligned_cols=92  Identities=18%  Similarity=0.177  Sum_probs=66.7

Q ss_pred             CCCCeeec--cCCCcCcC-------CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhc
Q 002861            1 MTGDVLPC--FDASTMIL-------PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKN   71 (873)
Q Consensus         1 ~~gD~i~~--~d~~~~~~-------~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~   71 (873)
                      +.|||++.  .++..++.       .++.+|+...|..+  .+.+|++..+++....    ..+|.+|.|||..++-++ 
T Consensus       109 l~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~--~t~yGyI~~~~~~~~~----~~~V~~f~EKP~~~~a~~-  181 (274)
T cd02509         109 LPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRP--ETGYGYIEAGEKLGGG----VYRVKRFVEKPDLETAKE-  181 (274)
T ss_pred             ecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCC--CCCeEEEEeCCcCCCC----ceEEeEEEECcChHHHHH-
Confidence            47899987  55544442       56788888888654  4789999998653110    116999999999865332 


Q ss_pred             CcccCCCccceeeceeeecchHHHHHHhhh
Q 002861           72 HAILDDGRALLDTGIIAVRGKAWEELVMLS  101 (873)
Q Consensus        72 ~a~~~~~~~l~~~Gi~~f~~~~~~~ll~~~  101 (873)
                        ....+..+..+|+|+|+.+.+.+.+.+.
T Consensus       182 --~~~~g~~~wNsGiyi~~~~~l~~~l~~~  209 (274)
T cd02509         182 --YLESGNYLWNSGIFLFRAKTFLEELKKH  209 (274)
T ss_pred             --HhhcCCeEEECceeeeeHHHHHHHHHHH
Confidence              2345677899999999999999999855

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form

Probab=96.72  E-value=0.0014  Score=71.64  Aligned_cols=75  Identities=17%  Similarity=0.239  Sum_probs=58.5

Q ss_pred             CCCee-eccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            2 TGDVL-PCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         2 ~gD~i-~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      .||++ +..|+..|+.    +++++|+++.+++  ..+++||...|+++         +|.+|.|||..++         
T Consensus       105 ~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~--~p~~yGvv~~d~~g---------~V~~i~EKp~~~~---------  164 (286)
T TIGR01207       105 LGDNIFYGHDLSDLLKRAAARESGATVFAYQVS--DPERYGVVEFDSNG---------RAISIEEKPAQPK---------  164 (286)
T ss_pred             ECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc--CHHHCceEEECCCC---------eEEEEEECCCCCC---------
Confidence            48865 5778777766    6789999999876  45789999999877         7999999996542         


Q ss_pred             CCccceeeceeeecchHHHHHHh
Q 002861           77 DGRALLDTGIIAVRGKAWEELVM   99 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~~ll~   99 (873)
                        ..++.+|+|+|+.+++ +.+.
T Consensus       165 --s~~~~~GiYi~~~~i~-~~l~  184 (286)
T TIGR01207       165 --SNYAVTGLYFYDNRVV-EIAR  184 (286)
T ss_pred             --CCEEEEEEEEEchHHH-HHHh
Confidence              3368999999999864 4443

This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=96.63  E-value=0.0058  Score=70.39  Aligned_cols=52  Identities=13%  Similarity=0.135  Sum_probs=48.3

Q ss_pred             eEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          206 VVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       206 ~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      .+.+|+++++|.|+ ++.|++|+|+++++||++|.|.+++|..+          +.|++++++
T Consensus       312 ~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~----------~~i~~~~~i  363 (407)
T PRK00844        312 SAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDG----------VRIGRGAVV  363 (407)
T ss_pred             eEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCC----------CEECCCCEE
Confidence            46789999999999 99999999999999999999999999887          899998865

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=96.58  E-value=0.0046  Score=53.35  Aligned_cols=47  Identities=23%  Similarity=0.243  Sum_probs=40.7

Q ss_pred             CcccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEe
Q 002861          196 TTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV  242 (873)
Q Consensus       196 ~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis  242 (873)
                      ...+.+..++.|.+|++.+++.|++++.|++|+|+++++||++|.|.
T Consensus        20 g~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~   66 (79)
T cd05787          20 GRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIP   66 (79)
T ss_pred             CCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEEC
Confidence            33345556778889999999999999999999999999999999885

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose

Probab=96.36  E-value=0.0021  Score=69.39  Aligned_cols=82  Identities=21%  Similarity=0.217  Sum_probs=57.5

Q ss_pred             CCCCeeeccC---CCcCcC----CCCceEEEEEecCccccccceEEEeCCC-CCcccccccccccceeecCCHHHHhhcC
Q 002861            1 MTGDVLPCFD---ASTMIL----PEDASCIITVPITLDIASNHGVIVAAKD-GILNENYALSLVDDLLQKPNVDELAKNH   72 (873)
Q Consensus         1 ~~gD~i~~~d---~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~-~~~~~~~~~~~v~~fl~KPs~~~l~~~~   72 (873)
                      +.||+++..+   +..|+.    .++++ +...+++.+..+.+|++.+|++ +...      +|..|.|||+.+.     
T Consensus       125 ~~gD~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~v~~d~~~~~~~------~v~~~~Ekp~~~~-----  192 (267)
T cd02541         125 LLGDDLIDSKEPCLKQLIEAYEKTGASV-IAVEEVPPEDVSKYGIVKGEKIDGDVF------KVKGLVEKPKPEE-----  192 (267)
T ss_pred             EECCeEEeCCchHHHHHHHHHHHhCCCE-EEEEEcChhcCccceEEEeecCCCCce------EEeEEEECCCCCC-----
Confidence            4699998763   666665    35554 5555777777889999999863 1001      6899999997532     


Q ss_pred             cccCCCccceeeceeeecchHHHHHH
Q 002861           73 AILDDGRALLDTGIIAVRGKAWEELV   98 (873)
Q Consensus        73 a~~~~~~~l~~~Gi~~f~~~~~~~ll   98 (873)
                          +...++.+|+|+|+.+.+..+.
T Consensus       193 ----~~~~~~~~Giyi~~~~~~~~l~  214 (267)
T cd02541         193 ----APSNLAIVGRYVLTPDIFDILE  214 (267)
T ss_pred             ----CCCceEEEEEEEcCHHHHHHHH
Confidence                1235789999999998775543

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=96.28  E-value=0.0041  Score=72.04  Aligned_cols=54  Identities=17%  Similarity=0.212  Sum_probs=49.4

Q ss_pred             eeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeee
Q 002861          205 AVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLW  269 (873)
Q Consensus       205 ~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~  269 (873)
                      +.+.+|+|+++|.| +++.|++|+|+++|.||++|.|.+++|..+          +.|++++.+.
T Consensus       323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~----------~~I~~~~~i~  376 (425)
T PRK00725        323 GMAINSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPD----------VNVGRSCRLR  376 (425)
T ss_pred             ceEEeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCC----------CEECCCCEEe
Confidence            46889999999999 799999999999999999999999999887          9999998663

>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional

Probab=96.25  E-value=0.0033  Score=69.38  Aligned_cols=83  Identities=19%  Similarity=0.259  Sum_probs=55.8

Q ss_pred             CCCCeee--------ccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCC-cccccccccccceeecCCHHH
Q 002861            1 MTGDVLP--------CFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGI-LNENYALSLVDDLLQKPNVDE   67 (873)
Q Consensus         1 ~~gD~i~--------~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~-~~~~~~~~~v~~fl~KPs~~~   67 (873)
                      +.||++.        ++|+.+|+.    .+++ |+++.++  +..+.+||++.|.... ...+.   +|.+|.|||+.+.
T Consensus       134 l~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~-tl~~~~~--~~~~~yGvv~~~~~~~~~~~~~---~V~~~~EKp~~~~  207 (302)
T PRK13389        134 ILPDVILDEYESDLSQDNLAEMIRRFDETGHS-QIMVEPV--ADVTAYGVVDCKGVELAPGESV---PMVGVVEKPKADV  207 (302)
T ss_pred             EeCcceecccccccccccHHHHHHHHHhcCCC-EEEEEEc--ccCCcceEEEecCcccccCCcc---eEEEEEECCCCCC
Confidence            3588875        378888877    4565 6666665  5578899999874210 00001   5899999998432


Q ss_pred             HhhcCcccCCCccceeeceeeecchHHHHHHh
Q 002861           68 LAKNHAILDDGRALLDTGIIAVRGKAWEELVM   99 (873)
Q Consensus        68 l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~ll~   99 (873)
                      -         ...++.+|+|+|+.+.+ +++.
T Consensus       208 ~---------~s~~~~~GiYi~~~~il-~~l~  229 (302)
T PRK13389        208 A---------PSNLAIVGRYVLSADIW-PLLA  229 (302)
T ss_pred             C---------CccEEEEEEEEECHHHH-HHHH
Confidence            0         12478999999999876 5664

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=96.21  E-value=0.0039  Score=66.20  Aligned_cols=76  Identities=16%  Similarity=0.243  Sum_probs=57.9

Q ss_pred             CCCCeee-ccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCccc
Q 002861            1 MTGDVLP-CFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAIL   75 (873)
Q Consensus         1 ~~gD~i~-~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~   75 (873)
                      +.||+++ ..|+..++.    +++++|+++.+++.  .+.+|++.+|+++         +|.+|.+||..+.        
T Consensus       105 ~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~g---------~v~~~~ekp~~~~--------  165 (240)
T cd02538         105 ILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVND--PERYGVVEFDENG---------RVLSIEEKPKKPK--------  165 (240)
T ss_pred             EECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCc--hhcCceEEecCCC---------cEEEEEECCCCCC--------
Confidence            3588755 556766665    57899999988753  5689999999887         7999999996542        


Q ss_pred             CCCccceeeceeeecchHHHHHHh
Q 002861           76 DDGRALLDTGIIAVRGKAWEELVM   99 (873)
Q Consensus        76 ~~~~~l~~~Gi~~f~~~~~~~ll~   99 (873)
                         ...+.+|+|+|+.+.+ +++.
T Consensus       166 ---~~~~~~Giyi~~~~~l-~~l~  185 (240)
T cd02538         166 ---SNYAVTGLYFYDNDVF-EIAK  185 (240)
T ss_pred             ---CCeEEEEEEEECHHHH-HHHH
Confidence               3368999999999876 5554

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=96.14  E-value=0.0067  Score=68.88  Aligned_cols=98  Identities=13%  Similarity=0.136  Sum_probs=66.8

Q ss_pred             CceeEEecCcHHHHhh---hccCCcc--cc--ccceeeec-CCCcccccccceeEEeeeecCCceeCCCcEEEEceeCCC
Q 002861          161 ELLFLHFGTSSEVLDH---LSGDVSG--LV--GRRHLCSI-PATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSG  232 (873)
Q Consensus       161 ~a~F~h~gt~~e~l~~---l~~~~~~--l~--~~~~~~~~-~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~  232 (873)
                      .+.+..+||..+|+.-   +......  +.  ....+... ...++..+..++.|.+|+|+++|+|+  +.|++|+|+++
T Consensus       233 ~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~~~Ig~~~~i~--~~v~~s~i~~~  310 (369)
T TIGR02092       233 TGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCIIE--GKVENSILSRG  310 (369)
T ss_pred             CCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEEeEEcCCCEEe--eEEeCCEECCC
Confidence            4567788999888762   1111100  00  00001110 11133456677888999999999997  46999999999


Q ss_pred             eEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeeee
Q 002861          233 IQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWE  270 (873)
Q Consensus       233 v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~~  270 (873)
                      +.||++|.|+++++..+          +.|++++.+..
T Consensus       311 ~~I~~~~~i~~sii~~~----------~~I~~~~~i~~  338 (369)
T TIGR02092       311 VHVGKDALIKNCIIMQR----------TVIGEGAHLEN  338 (369)
T ss_pred             CEECCCCEEEeeEEeCC----------CEECCCCEEEE
Confidence            99999999999999887          88888876543

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=96.09  E-value=0.0091  Score=59.58  Aligned_cols=60  Identities=18%  Similarity=0.219  Sum_probs=45.9

Q ss_pred             cccceeEE-eeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeeee
Q 002861          201 IAASAVVL-SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWE  270 (873)
Q Consensus       201 i~~~~~V~-~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~~  270 (873)
                      |..++.+. +++|+.++.|++++.|++|+|++++.|++++.+.++++..+          +.|.+++++..
T Consensus        44 I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~----------~~I~~~~~i~~  104 (163)
T cd05636          44 IGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGEN----------VNLGAGTITAN  104 (163)
T ss_pred             ECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCC----------CEECCCcEEcc
Confidence            43454454 57888888888888888888888888888888888887776          88888876543

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=96.08  E-value=0.011  Score=51.39  Aligned_cols=45  Identities=11%  Similarity=0.137  Sum_probs=40.8

Q ss_pred             cccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeC
Q 002861          199 SDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG  243 (873)
Q Consensus       199 ~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg  243 (873)
                      +.+..++.|.+|++..++.|++++.|.+|+++.++.||++|.+..
T Consensus        24 ~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~   68 (80)
T cd05824          24 VTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLEN   68 (80)
T ss_pred             CEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEec
Confidence            445578888999999999999999999999999999999999977

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=96.08  E-value=0.012  Score=65.65  Aligned_cols=76  Identities=18%  Similarity=0.223  Sum_probs=54.7

Q ss_pred             ccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCc--cceeeCCCeee-eeeeec
Q 002861          198 VSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDS--FRFMLPDRHCL-WEVPLV  274 (873)
Q Consensus       198 ~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~--~~~~iP~~~~i-~~v~l~  274 (873)
                      |..+..++.|.+|+++.||.|.-  .|+||+|+.+|+|+++|.|..++|..+. .+=++.  .+++|..+++| ..+.+.
T Consensus       285 Pak~~~~s~v~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~~~-~IG~~~~l~~aIIDk~v~I~~g~~i~  361 (393)
T COG0448         285 PAKFVNDSEVSNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMPDV-EIGEGAVLRRAIIDKNVVIGEGVVIG  361 (393)
T ss_pred             CceEecCceEeeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeCCc-EECCCCEEEEEEeCCCcEeCCCcEEc
Confidence            34577777788899888888876  8889999999999999988888877653 111222  34788888877 445555


Q ss_pred             Cc
Q 002861          275 GC  276 (873)
Q Consensus       275 ~~  276 (873)
                      +.
T Consensus       362 ~~  363 (393)
T COG0448         362 GD  363 (393)
T ss_pred             CC
Confidence            55

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=96.07  E-value=0.041  Score=62.18  Aligned_cols=107  Identities=16%  Similarity=0.126  Sum_probs=69.2

Q ss_pred             cCcceEEEecCceeEEecCcHHHHhh---hccCCcc--cc-ccceee-e-cCCCcccccccceeEEeeeecCCceeCCCc
Q 002861          151 KQRMFSYCAYELLFLHFGTSSEVLDH---LSGDVSG--LV-GRRHLC-S-IPATTVSDIAASAVVLSSKIAHGVSIGEDS  222 (873)
Q Consensus       151 ~~~i~~~~~p~a~F~h~gt~~e~l~~---l~~~~~~--l~-~~~~~~-~-~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s  222 (873)
                      ..+++.+..+ +.+..+||...|+.-   +......  +. ....+. . ....++.-+..++.|.+|+|+++|+|+++ 
T Consensus       229 ~~~v~~~~~~-~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~I~~~-  306 (361)
T TIGR02091       229 EGSVQAYLFS-GYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSEGCIISGA-  306 (361)
T ss_pred             cCceEEEeeC-CEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEECCCCEECCC-
Confidence            3455555444 667789999888762   2221110  10 000010 0 01111122344457788999999999987 


Q ss_pred             EEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeee
Q 002861          223 LIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLW  269 (873)
Q Consensus       223 ~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~  269 (873)
                      .|++|+|++++.||++|.|.++++..+          +.|++++.+.
T Consensus       307 ~v~~s~i~~~~~I~~~~~i~~sii~~~----------~~v~~~~~l~  343 (361)
T TIGR02091       307 TVSHSVLGIRVRIGSGSTVEDSVIMGD----------VGIGRGAVIR  343 (361)
T ss_pred             EEEccEECCCCEECCCCEEeeeEEeCC----------CEECCCCEEe
Confidence            889999999999999999999999776          7888877553

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=96.07  E-value=0.011  Score=61.49  Aligned_cols=58  Identities=12%  Similarity=0.079  Sum_probs=50.4

Q ss_pred             cccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          201 IAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       201 i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      |..++.+.+++|+++++|+++++|.+|+|++++.|+.+|.|.++.|.++          +.|.+++.+
T Consensus        11 I~~~a~i~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~----------~~I~~~v~I   68 (204)
T TIGR03308        11 LHPTAELTESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKF----------CSIAAMVRI   68 (204)
T ss_pred             ECCCcEEeccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCC----------CEECCCCEE
Confidence            4456677788999999999999999999999999999999999998887          888888754

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

Probab=96.03  E-value=0.0067  Score=65.07  Aligned_cols=70  Identities=17%  Similarity=0.313  Sum_probs=56.8

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      +.||+|+..|+.+|+.    +++++|++.+.    ..+.+||+.+|+++         +|..|.+||..+          
T Consensus       124 ~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~----~~~~~g~v~~d~~g---------~V~~~~ekp~~~----------  180 (253)
T cd02524         124 TYGDGVSDVNINALIEFHRSHGKLATVTAVH----PPGRFGELDLDDDG---------QVTSFTEKPQGD----------  180 (253)
T ss_pred             EcCCEEECCCHHHHHHHHHHcCCCEEEEEec----CCCcccEEEECCCC---------CEEEEEECCCCC----------
Confidence            4699999999998886    67889988763    35678999999887         799999999643          


Q ss_pred             CCccceeeceeeecchHHH
Q 002861           77 DGRALLDTGIIAVRGKAWE   95 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~   95 (873)
                        ...+.+|+|+|+.+.+.
T Consensus       181 --~~~i~~Giyi~~~~l~~  197 (253)
T cd02524         181 --GGWINGGFFVLEPEVFD  197 (253)
T ss_pred             --CceEEEEEEEECHHHHH
Confidence              12688999999988753

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

Probab=95.82  E-value=0.0092  Score=65.65  Aligned_cols=79  Identities=18%  Similarity=0.367  Sum_probs=54.1

Q ss_pred             CCCeeec--------cCCCcCcC----CCCceEEEEEecCccccccceEEEeCC----CCCcccccccccccceeecCCH
Q 002861            2 TGDVLPC--------FDASTMIL----PEDASCIITVPITLDIASNHGVIVAAK----DGILNENYALSLVDDLLQKPNV   65 (873)
Q Consensus         2 ~gD~i~~--------~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~----~~~~~~~~~~~~v~~fl~KPs~   65 (873)
                      -||++..        +|+.+|+.    +++.+ +++.+++ +..+.+||+.+|+    ++      ..++|.+|.|||..
T Consensus       130 ~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~-~~~~~~~-~~~~~yGvv~~~~~~d~~g------~v~~I~~~~EKP~~  201 (297)
T TIGR01105       130 LPDIIIDDATADPLRYNLAAMIARFNETGRSQ-VLAKRMP-GDLSEYSVIQTKEPLDREG------KVSRIVEFIEKPDQ  201 (297)
T ss_pred             ECCeeccccccccchhHHHHHHHHHHHhCCcE-EEEEEcC-CCCccceEEEecccccCCC------CeeeEeEEEECCCC
Confidence            4787764        67778876    45655 5556665 3488999999953    22      12257899999976


Q ss_pred             HHHhhcCcccCCCccceeeceeeecchHHHH
Q 002861           66 DELAKNHAILDDGRALLDTGIIAVRGKAWEE   96 (873)
Q Consensus        66 ~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~   96 (873)
                      ++-.        ..-++.+|+|+|+.+.+..
T Consensus       202 ~~~~--------~s~~~~~GiYi~~~~i~~~  224 (297)
T TIGR01105       202 PQTL--------DSDLMAVGRYVLSADIWAE  224 (297)
T ss_pred             cccC--------CcCEEEEEEEEECHHHHHH
Confidence            5311        2348999999999987653

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=95.79  E-value=0.018  Score=66.79  Aligned_cols=93  Identities=18%  Similarity=0.154  Sum_probs=60.6

Q ss_pred             CcceEEEecCceeEEecCcHHHHh---hhc-cCCcc--ccccc-ee-eecCCCcccccccceeEEeeeecCCceeCCCcE
Q 002861          152 QRMFSYCAYELLFLHFGTSSEVLD---HLS-GDVSG--LVGRR-HL-CSIPATTVSDIAASAVVLSSKIAHGVSIGEDSL  223 (873)
Q Consensus       152 ~~i~~~~~p~a~F~h~gt~~e~l~---~l~-~~~~~--l~~~~-~~-~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~  223 (873)
                      .+++.+.. ++.+..+||...|+.   .+. .....  +.... .+ .......+..+ .++.+.+|+|+++|.| +++.
T Consensus       245 ~~v~~~~~-~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~-~~~~~~~~~ig~~~~i-~~~~  321 (429)
T PRK02862        245 YKVQSYLF-DGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKL-LDATITESIIAEGCII-KNCS  321 (429)
T ss_pred             CcEEEEEe-CCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccc-cccEEEeCEECCCCEE-CCcE
Confidence            33443433 466778899998886   333 21111  11000 00 01112222234 4678889999999999 8999


Q ss_pred             EEEceeCCCeEECCCcEEeCcCCC
Q 002861          224 IYDSNISSGIQIGSLSIVVGTNFP  247 (873)
Q Consensus       224 Ve~s~l~~~v~IG~~~iisg~~i~  247 (873)
                      |.+|+|+++++||++|.|.++++.
T Consensus       322 i~~svi~~~~~Ig~~~~i~~svi~  345 (429)
T PRK02862        322 IHHSVLGIRSRIESGCTIEDTLVM  345 (429)
T ss_pred             EEEEEEeCCcEECCCCEEEeeEEe
Confidence            999999999999999999998874

>PRK10122 GalU regulator GalF; Provisional

Probab=95.79  E-value=0.0083  Score=66.07  Aligned_cols=81  Identities=20%  Similarity=0.336  Sum_probs=54.8

Q ss_pred             CCCeeec--------cCCCcCcC----CCCceEEEEEecCccccccceEEEeCC----CCCcccccccccccceeecCCH
Q 002861            2 TGDVLPC--------FDASTMIL----PEDASCIITVPITLDIASNHGVIVAAK----DGILNENYALSLVDDLLQKPNV   65 (873)
Q Consensus         2 ~gD~i~~--------~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~----~~~~~~~~~~~~v~~fl~KPs~   65 (873)
                      .||+++.        +|+.+|+.    .+++++ +..+.+. ..+.+||+..|.    ++  +    ..+|.+|.|||..
T Consensus       130 ~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~~~-~~~~~~~-~~~~yGvv~~d~~~~~~g--~----v~~I~~~~EKp~~  201 (297)
T PRK10122        130 LPDVVIDDASADPLRYNLAAMIARFNETGRSQV-LAKRMPG-DLSEYSVIQTKEPLDREG--K----VSRIVEFIEKPDQ  201 (297)
T ss_pred             ECCeeccCccccccchhHHHHHHHHHHhCCcEE-EEEECCC-CCCCceEEEecCcccCCC--C----eeeEEEEEECCCC
Confidence            4888864        67788876    456644 4445443 678999999973    22  1    1157899999976


Q ss_pred             HHHhhcCcccCCCccceeeceeeecchHHHHHH
Q 002861           66 DELAKNHAILDDGRALLDTGIIAVRGKAWEELV   98 (873)
Q Consensus        66 ~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~ll   98 (873)
                      ++..        ..-++.+|+|+|+.+.+..+.
T Consensus       202 ~~~~--------~s~~~~~GiYi~~~~i~~~l~  226 (297)
T PRK10122        202 PQTL--------DSDLMAVGRYVLSADIWPELE  226 (297)
T ss_pred             cccC--------CccEEEEEEEEECHHHHHHHH
Confidence            4311        123799999999999766543

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=95.64  E-value=0.018  Score=57.00  Aligned_cols=40  Identities=20%  Similarity=0.348  Sum_probs=30.7

Q ss_pred             eeecCCceeCCCcEE-----EEceeCCCeEECCCcEEeCcCCCCC
Q 002861          210 SKIAHGVSIGEDSLI-----YDSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~V-----e~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      ++|+++|.|+++++|     .+|+|++++.||.+++|.++.|..+
T Consensus        40 i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~   84 (155)
T cd04745          40 IVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRN   84 (155)
T ss_pred             EEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCC
Confidence            567778888888887     5577888888888888887777665

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>PLN02472 uncharacterized protein

Probab=95.57  E-value=0.017  Score=61.50  Aligned_cols=32  Identities=34%  Similarity=0.401  Sum_probs=20.3

Q ss_pred             eeecCCceeCCCcEEEEceeCCCeEECCCcEE
Q 002861          210 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIV  241 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~ii  241 (873)
                      ++|+.+|+|+++++|++|+|++++.||.+|+|
T Consensus       127 tvIG~~v~IG~~s~L~~~~Igd~v~IG~~svI  158 (246)
T PLN02472        127 TLIDRYVTIGAYSLLRSCTIEPECIIGQHSIL  158 (246)
T ss_pred             cEECCCCEECCCcEECCeEEcCCCEECCCCEE
Confidence            55666666666666666666666666666655

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=95.50  E-value=0.023  Score=58.44  Aligned_cols=40  Identities=15%  Similarity=0.295  Sum_probs=31.2

Q ss_pred             eeecCCceeCCCcEE-----EEceeCCCeEECCCcEEeCcCCCCC
Q 002861          210 SKIAHGVSIGEDSLI-----YDSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~V-----e~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      .+|+.++.|+++++|     .+|+|++++.||.+|+|.++.|.++
T Consensus        48 i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~   92 (192)
T TIGR02287        48 IVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRN   92 (192)
T ss_pred             eEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCC
Confidence            467778888888887     4678888888888888888887765

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=95.40  E-value=0.015  Score=60.58  Aligned_cols=75  Identities=19%  Similarity=0.259  Sum_probs=58.2

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      +.||+++..|+..++.    ++++++++..+.+  ....+|++.+|+++         +|..|.+||..+          
T Consensus       102 ~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~v~~d~~~---------~v~~~~ek~~~~----------  160 (223)
T cd06915         102 LNGDTYFDVDLLALLAALRASGADATMALRRVP--DASRYGNVTVDGDG---------RVIAFVEKGPGA----------  160 (223)
T ss_pred             EECCcccCCCHHHHHHHHHhCCCcEEEEEEECC--CCCcceeEEECCCC---------eEEEEEeCCCCC----------
Confidence            3589988888777665    5788888887763  45789999998876         799999998744          


Q ss_pred             CCccceeeceeeecchHHHHH
Q 002861           77 DGRALLDTGIIAVRGKAWEEL   97 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~~l   97 (873)
                       ...++++|+|+|+.+.+..+
T Consensus       161 -~~~~~~~Giy~~~~~~l~~~  180 (223)
T cd06915         161 -APGLINGGVYLLRKEILAEI  180 (223)
T ss_pred             -CCCcEEEEEEEECHHHHhhC
Confidence             23478999999999987654

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>PLN02296 carbonate dehydratase

Probab=95.40  E-value=0.025  Score=61.17  Aligned_cols=49  Identities=20%  Similarity=0.366  Sum_probs=40.2

Q ss_pred             eeecCCceeCCCcEEE-----------EceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          210 SKIAHGVSIGEDSLIY-----------DSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve-----------~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      .+|+++|.|+++++|.           +|+|++++.||.+|+|.+|.|..+          +.|..|+.+
T Consensus        92 I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~----------v~IG~ga~I  151 (269)
T PLN02296         92 ISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDE----------AFVGMGATL  151 (269)
T ss_pred             eEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCC----------cEECCCcEE
Confidence            3789999999999985           588999999999999999988776          666666643

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=95.28  E-value=0.02  Score=59.91  Aligned_cols=73  Identities=16%  Similarity=0.069  Sum_probs=56.5

Q ss_pred             CCCCeeeccCCCcCcC------CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcc
Q 002861            1 MTGDVLPCFDASTMIL------PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAI   74 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~------~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~   74 (873)
                      +.||+++.+|+..|+.      .++.+|+...+.+  ..+.+|++.+|+++         +|..|.+||..         
T Consensus       103 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~v~~d~~~---------~v~~~~~~~~~---------  162 (221)
T cd06422         103 VNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP--GHNGVGDFSLDADG---------RLRRGGGGAVA---------  162 (221)
T ss_pred             EeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC--CCCCcceEEECCCC---------cEeecccCCCC---------
Confidence            4699999999988886      3455666655543  56788999999877         78999999832         


Q ss_pred             cCCCccceeeceeeecchHHHHHH
Q 002861           75 LDDGRALLDTGIIAVRGKAWEELV   98 (873)
Q Consensus        75 ~~~~~~l~~~Gi~~f~~~~~~~ll   98 (873)
                           .++.+|+|+|+.+.+..+.
T Consensus       163 -----~~~~~Giyi~~~~~l~~l~  181 (221)
T cd06422         163 -----PFTFTGIQILSPELFAGIP  181 (221)
T ss_pred             -----ceEEEEEEEEcHHHHhhCC
Confidence                 3689999999998777654

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=95.28  E-value=0.048  Score=46.43  Aligned_cols=41  Identities=24%  Similarity=0.398  Sum_probs=27.2

Q ss_pred             ccceeEEe-eeecCCceeCCCcEEEEc---------eeCCCeEECCCcEEe
Q 002861          202 AASAVVLS-SKIAHGVSIGEDSLIYDS---------NISSGIQIGSLSIVV  242 (873)
Q Consensus       202 ~~~~~V~~-Svl~~~v~v~~~s~Ve~s---------~l~~~v~IG~~~iis  242 (873)
                      ..++.|.. ++|++++.|++++.|.++         +|++++.||.+|+|.
T Consensus        10 ~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~   60 (78)
T cd00208          10 HPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH   60 (78)
T ss_pred             CCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEe
Confidence            33445554 788888888888888874         555556666665553

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=95.11  E-value=0.084  Score=52.26  Aligned_cols=49  Identities=20%  Similarity=0.233  Sum_probs=30.4

Q ss_pred             cccceeEEee----eecCCceeCCCcEEEE-----ceeCCCeEECCCcEEeCcCCCCC
Q 002861          201 IAASAVVLSS----KIAHGVSIGEDSLIYD-----SNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       201 i~~~~~V~~S----vl~~~v~v~~~s~Ve~-----s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      |..++.|..+    +|++++.|+++++|..     ++|++++.|+.+|+|.++.|..+
T Consensus        27 I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~   84 (154)
T cd04650          27 VWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNY   84 (154)
T ss_pred             EcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCC
Confidence            4444444443    6677777777777765     56667777777777666665544

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=95.09  E-value=0.042  Score=54.19  Aligned_cols=39  Identities=15%  Similarity=0.342  Sum_probs=22.2

Q ss_pred             eecCCceeCCCcEEEEc-----eeCCCeEECCCcEEeCcCCCCC
Q 002861          211 KIAHGVSIGEDSLIYDS-----NISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve~s-----~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      +|++++.|+++++|..+     +|++++.|+.+|+|.++.+..+
T Consensus        40 ~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~   83 (153)
T cd04645          40 RIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDN   83 (153)
T ss_pred             EECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCC
Confidence            55556666666655553     5556666666666555555443

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

Probab=95.01  E-value=0.025  Score=59.75  Aligned_cols=73  Identities=21%  Similarity=0.277  Sum_probs=56.2

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      +.||+++..|+..++.    .++++++...+.+-  .+.+|+.++|+ +         +|..|.+||..+          
T Consensus       104 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~d~-~---------~v~~~~ek~~~~----------  161 (236)
T cd04189         104 YLGDNLIQEGISPLVRDFLEEDADASILLAEVED--PRRFGVAVVDD-G---------RIVRLVEKPKEP----------  161 (236)
T ss_pred             EECCeecCcCHHHHHHHHHhcCCceEEEEEECCC--cccceEEEEcC-C---------eEEEEEECCCCC----------
Confidence            3689999999888764    67888888887653  46789988874 3         589999999643          


Q ss_pred             CCccceeeceeeecchHHHH
Q 002861           77 DGRALLDTGIIAVRGKAWEE   96 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~~   96 (873)
                       ....+.+|+|+|+.+.+..
T Consensus       162 -~~~~~~~Giy~~~~~~~~~  180 (236)
T cd04189         162 -PSNLALVGVYAFTPAIFDA  180 (236)
T ss_pred             -CCCEEEEEEEEeCHHHHHH
Confidence             2346899999999887654

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=94.99  E-value=0.055  Score=53.92  Aligned_cols=53  Identities=19%  Similarity=0.250  Sum_probs=45.4

Q ss_pred             CcccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCC
Q 002861          196 TTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPE  248 (873)
Q Consensus       196 ~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~  248 (873)
                      ...+.|..++.+.+|+|+.++.|+.++.+++|+|++++.||++|.+.+...+.
T Consensus        57 g~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~  109 (163)
T cd05636          57 GDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRFDD  109 (163)
T ss_pred             CCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcccCcCC
Confidence            33355667788899999999999999999999999999999999998876543

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=94.93  E-value=0.052  Score=54.48  Aligned_cols=40  Identities=23%  Similarity=0.442  Sum_probs=29.5

Q ss_pred             eeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861          210 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      ++|+.+|.|+.++.|.+++|++++.||.++.|.++.+..+
T Consensus        83 ~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~~~i~~~  122 (167)
T cd00710          83 AYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDGVEIPPG  122 (167)
T ss_pred             EEECCCCEECCCCEEECCEECCCCEEcCCCEEeCCEeCCC
Confidence            6777777777777777777777777777777776655544

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=94.88  E-value=0.044  Score=54.25  Aligned_cols=51  Identities=16%  Similarity=0.333  Sum_probs=40.3

Q ss_pred             cccccceeE-----EeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeC-cCCCCC
Q 002861          199 SDIAASAVV-----LSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG-TNFPEE  249 (873)
Q Consensus       199 ~~i~~~~~V-----~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg-~~i~~~  249 (873)
                      +.|..++.|     .+|+|+.++.|+++++|++|+|++++.||.+|+|.. +.|.++
T Consensus        46 ~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~g~~Ig~~  102 (155)
T cd04745          46 ANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVVMDGAVIGEE  102 (155)
T ss_pred             CEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCCCEEeCCCEECCC
Confidence            334445444     358999999999999999999999999999999865 665554

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=94.87  E-value=0.036  Score=62.55  Aligned_cols=42  Identities=29%  Similarity=0.289  Sum_probs=36.3

Q ss_pred             eeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCC
Q 002861          209 SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEA  250 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~  250 (873)
                      ++.+.+.+.|++++.|.+|+|.+++.||++|.|.++.+..+.
T Consensus       248 ~~~i~~~~~i~~~~~i~~~~i~~~~~Ig~~~~I~~~~i~~~~  289 (353)
T TIGR01208       248 ESKIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYT  289 (353)
T ss_pred             CCEEcCCEEECCCCEEeCCEEECCcEECCCCEEcCcEECCCC
Confidence            456778899999999999999999999999999888777653

Alternate name: dTDP-D-glucose synthase

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=94.77  E-value=0.046  Score=63.68  Aligned_cols=49  Identities=29%  Similarity=0.423  Sum_probs=39.4

Q ss_pred             cccceeEE-eeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861          201 IAASAVVL-SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       201 i~~~~~V~-~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      |..++.|. +++|+++|.|+++++|.+|+|++++.|+++|.|.++.|.++
T Consensus       270 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~  319 (451)
T TIGR01173       270 IDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEG  319 (451)
T ss_pred             EcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCC
Confidence            33344443 47889999999999999999999999999999999888776

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=94.73  E-value=0.032  Score=65.41  Aligned_cols=93  Identities=14%  Similarity=0.195  Sum_probs=61.0

Q ss_pred             CCCCeeeccC--CCcCcC-------CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhc
Q 002861            1 MTGDVLPCFD--ASTMIL-------PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKN   71 (873)
Q Consensus         1 ~~gD~i~~~d--~~~~~~-------~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~   71 (873)
                      +.|||++..+  +..++.       .++-+|+...|  ..-.+.+|++..+++-.++..+   +|..|.|||+.++-++ 
T Consensus       110 l~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p--~~p~t~YGyI~~~~~~~~~~~~---~V~~f~EKP~~~~a~~-  183 (468)
T TIGR01479       110 LAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVP--THPETGYGYIRRGEPLAGEDVY---QVQRFVEKPDLATAQA-  183 (468)
T ss_pred             ecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecC--CCCCCCceEEEeCCccCCCCce---EEeEEEECCChHHHHH-
Confidence            4789988643  343432       24445544443  3456789999998531000011   6999999998765221 


Q ss_pred             CcccCCCccceeeceeeecchHHHHHHhhh
Q 002861           72 HAILDDGRALLDTGIIAVRGKAWEELVMLS  101 (873)
Q Consensus        72 ~a~~~~~~~l~~~Gi~~f~~~~~~~ll~~~  101 (873)
                        ....|..+..+|+|+|+.+.+.+.+..+
T Consensus       184 --~l~~g~~~wNsGif~~~~~~ll~~l~~~  211 (468)
T TIGR01479       184 --YLESGDYYWNSGMFLFRASRYLAELKKH  211 (468)
T ss_pred             --HHhcCCeEEEeeEEEEEHHHHHHHHHHH
Confidence              2345677999999999999999999855

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=94.67  E-value=0.061  Score=53.03  Aligned_cols=51  Identities=20%  Similarity=0.375  Sum_probs=40.3

Q ss_pred             cccccceeEEe-----eeecCCceeCCCcEEEEceeCCCeEECCCcEEe-CcCCCCC
Q 002861          199 SDIAASAVVLS-----SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       199 ~~i~~~~~V~~-----Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      +.|..++.|..     ++|+.++.|+.++.|++++|++++.||.++.|. ++.+.++
T Consensus        45 ~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v~~~~~ig~~  101 (153)
T cd04645          45 TNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILDGAVIGKG  101 (153)
T ss_pred             CEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCCEEcCCCEECCC
Confidence            34445555555     499999999999999999999999999999997 5655554

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=94.58  E-value=0.038  Score=56.82  Aligned_cols=42  Identities=10%  Similarity=0.235  Sum_probs=35.7

Q ss_pred             EeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeC-cCCCCC
Q 002861          208 LSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG-TNFPEE  249 (873)
Q Consensus       208 ~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg-~~i~~~  249 (873)
                      .+|+|+.++.|+.+++|++|+|++++.||.+|+|.. +.|..+
T Consensus        68 ~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~IG~~  110 (192)
T TIGR02287        68 QDTVVEENGHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGEN  110 (192)
T ss_pred             CCCeECCCCEECCCCEEcCCEECCCCEECCCcccCCCeEECCC
Confidence            368999999999999999999999999999998843 555444

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=94.48  E-value=0.041  Score=64.32  Aligned_cols=41  Identities=32%  Similarity=0.443  Sum_probs=37.7

Q ss_pred             eeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861          209 SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      +++|+++|.|+++|+|++|+|++++.|+++|.|.++.|..+
T Consensus       287 ~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~  327 (456)
T PRK14356        287 ASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDG  327 (456)
T ss_pred             ceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecc
Confidence            57899999999999999999999999999999999998876

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=94.42  E-value=0.069  Score=54.73  Aligned_cols=49  Identities=31%  Similarity=0.443  Sum_probs=31.7

Q ss_pred             ccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEe-CcCCCC
Q 002861          200 DIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPE  248 (873)
Q Consensus       200 ~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis-g~~i~~  248 (873)
                      .|..++.|.+++|+.++.|+++++|++|+|+.++.||.+|.|. ++.+..
T Consensus        41 ~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~   90 (193)
T cd03353          41 VIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGE   90 (193)
T ss_pred             EECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECC
Confidence            3445556666677777777777777777777777777777665 444433

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=94.37  E-value=0.025  Score=41.15  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=26.5

Q ss_pred             eeeecCCceeCCCcE-EEEceeCCCeEECCCcEEeC
Q 002861          209 SSKIAHGVSIGEDSL-IYDSNISSGIQIGSLSIVVG  243 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~-Ve~s~l~~~v~IG~~~iisg  243 (873)
                      +++|+.++.|++++. ..+++|++++.||.+|.|.|
T Consensus         1 ~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~g   36 (36)
T PF00132_consen    1 NVVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIGG   36 (36)
T ss_dssp             TEEEETTEEEETTEEEETTEEE-TTEEEETTEEEES
T ss_pred             CCEEcCCCEECCCcEecCCCEECCCCEEcCCCEECC
Confidence            356888888888888 45677788888888888865

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=94.32  E-value=0.082  Score=54.51  Aligned_cols=39  Identities=13%  Similarity=0.278  Sum_probs=20.0

Q ss_pred             eecCCceeCCCcEEEE-----ceeCCCeEECCCcEEeCcCCCCC
Q 002861          211 KIAHGVSIGEDSLIYD-----SNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve~-----s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      +|+.+|.|+++++|..     |+|++++.||.+|+|.++.|..+
T Consensus        51 ~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~   94 (196)
T PRK13627         51 IVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRD   94 (196)
T ss_pred             EECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCC
Confidence            4444555555555422     44555555555555555555443

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=94.28  E-value=0.045  Score=63.69  Aligned_cols=45  Identities=20%  Similarity=0.177  Sum_probs=41.2

Q ss_pred             cccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCC
Q 002861          201 IAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNF  246 (873)
Q Consensus       201 i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i  246 (873)
                      .+.++.|.+|+|+++|.|+ ++.|++|+|++++.||++|.|.++++
T Consensus       307 ~~~~~~i~~s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii  351 (436)
T PLN02241        307 KIEDCRITDSIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVM  351 (436)
T ss_pred             EecCCeEEEeEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEE
Confidence            3357778899999999999 99999999999999999999998887

>PLN02296 carbonate dehydratase

Probab=94.15  E-value=0.065  Score=57.96  Aligned_cols=41  Identities=15%  Similarity=0.318  Sum_probs=35.9

Q ss_pred             eeeecCCceeCCCcEEEEceeCCCeEECCCcEEe-CcCCCCC
Q 002861          209 SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      +|+|+.+|.|+.+|+|..|.|++++.||.+|+|. ++.|.++
T Consensus       119 ~siIG~~v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~Ig~~  160 (269)
T PLN02296        119 PTIIGDNVTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKH  160 (269)
T ss_pred             CcEeCCCCEECCCceecCCEECCCcEECCCcEECCCeEECCC
Confidence            5899999999999999999999999999999884 5555555

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

Probab=94.10  E-value=0.052  Score=56.55  Aligned_cols=70  Identities=17%  Similarity=0.342  Sum_probs=54.5

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      +.||.++..++..|+.    +++++++...+.+.  .+.+|++..|. +         +|.+|.+||...          
T Consensus       101 ~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~d~-~---------~v~~~~ek~~~~----------  158 (220)
T cd06426         101 MNGDILTNLNYEHLLDFHKENNADATVCVREYEV--QVPYGVVETEG-G---------RITSIEEKPTHS----------  158 (220)
T ss_pred             EcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--CCcceEEEECC-C---------EEEEEEECCCCC----------
Confidence            4689999888888876    66888888877543  36799999885 5         689999998542          


Q ss_pred             CCccceeeceeeecchHHH
Q 002861           77 DGRALLDTGIIAVRGKAWE   95 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~   95 (873)
                         .++.+|+|+|+.+.+.
T Consensus       159 ---~~~~~Giy~~~~~~~~  174 (220)
T cd06426         159 ---FLVNAGIYVLEPEVLD  174 (220)
T ss_pred             ---CeEEEEEEEEcHHHHh
Confidence               2578999999998754

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

Probab=93.98  E-value=0.024  Score=59.33  Aligned_cols=87  Identities=11%  Similarity=0.112  Sum_probs=59.6

Q ss_pred             CCCCeeeccCCCcCc----C--CCCceEEEEEecCccc-------cccceEEEeCCCCCcccccccccccceeecCCHHH
Q 002861            1 MTGDVLPCFDASTMI----L--PEDASCIITVPITLDI-------ASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDE   67 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~----~--~~a~vtv~a~p~~~~~-------a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~   67 (873)
                      ++||+|+.+|+..++    .  +++++|+.....+...       +++.+++++|++....      ++..+.+||....
T Consensus       109 ~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~------~~~~~~~~~~~~~  182 (216)
T cd02507         109 LSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRL------LLLHYEEDLDEDL  182 (216)
T ss_pred             EeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCCCcEEEEcCCCCce------EEEechhhcCcCc
Confidence            479999999999999    4  5777777777765544       8889999999984211      5677888876532


Q ss_pred             Hh--hcCccc-CC----CccceeeceeeecchH
Q 002861           68 LA--KNHAIL-DD----GRALLDTGIIAVRGKA   93 (873)
Q Consensus        68 l~--~~~a~~-~~----~~~l~~~Gi~~f~~~~   93 (873)
                      .-  ....+. .|    ..-|+|.|+|+|+..+
T Consensus       183 ~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~V  215 (216)
T cd02507         183 ELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDV  215 (216)
T ss_pred             ccccCHHHHhcCCCEEEEcCcccccEEEecCcC
Confidence            11  000111 11    2348999999999764

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>PLN02472 uncharacterized protein

Probab=93.79  E-value=0.088  Score=56.20  Aligned_cols=48  Identities=13%  Similarity=0.250  Sum_probs=39.9

Q ss_pred             eeecCCceeCCCcEEE-----------EceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCee
Q 002861          210 SKIAHGVSIGEDSLIY-----------DSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHC  267 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve-----------~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~  267 (873)
                      .+|+.++.|+++|+|.           +++|+++++||.+|+|.+|.|..+          +.|-.++.
T Consensus        99 I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~----------v~IG~~sv  157 (246)
T PLN02472         99 ITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPE----------CIIGQHSI  157 (246)
T ss_pred             eEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCC----------CEECCCCE
Confidence            3688888899999884           689999999999999999998776          66666653

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=93.77  E-value=0.071  Score=62.37  Aligned_cols=39  Identities=13%  Similarity=0.296  Sum_probs=30.8

Q ss_pred             eecCCceeCCCcEEE-EceeCCCeEECCCcEEeCcCCCCC
Q 002861          211 KIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      .++++|.|+++++|+ +++|++++.||.+|+|.++.|..+
T Consensus       267 ~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~  306 (456)
T PRK09451        267 THGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDD  306 (456)
T ss_pred             EECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCC
Confidence            466778888888887 577888888888888888777665

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=93.64  E-value=0.19  Score=51.57  Aligned_cols=48  Identities=23%  Similarity=0.421  Sum_probs=26.7

Q ss_pred             cccceeEEeeeecCCceeCCCcEEE-EceeCCCeEECCCcEEeCcCCCC
Q 002861          201 IAASAVVLSSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVGTNFPE  248 (873)
Q Consensus       201 i~~~~~V~~Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg~~i~~  248 (873)
                      |..++.+.+|+++.++.|++++.|. +++|++++.||+++.+.+..+.+
T Consensus        59 I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~  107 (193)
T cd03353          59 IKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGE  107 (193)
T ss_pred             EcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceEcC
Confidence            3344445555666666666666664 45555666666655555555444

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=93.52  E-value=0.14  Score=50.97  Aligned_cols=39  Identities=23%  Similarity=0.336  Sum_probs=26.0

Q ss_pred             eeecCCceeCCCcEEEEceeCCCeEECCCcEE-eCcCCCC
Q 002861          210 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIV-VGTNFPE  248 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~ii-sg~~i~~  248 (873)
                      ++|+.++.|++++++.+|.|+.++.||++|.| .++.+..
T Consensus        73 v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~  112 (161)
T cd03359          73 LHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIGRRCIIKD  112 (161)
T ss_pred             eEECCccEECCCCEEEeeEEcCCcEECCCCEEcCCCEECC
Confidence            35777777777777777777777777777766 3344433

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=93.50  E-value=0.075  Score=54.81  Aligned_cols=43  Identities=16%  Similarity=0.254  Sum_probs=35.8

Q ss_pred             EEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeC-cCCCCC
Q 002861          207 VLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG-TNFPEE  249 (873)
Q Consensus       207 V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg-~~i~~~  249 (873)
                      ..+|+|+.++.|+.+++|++|+|++++.||.+++|.. +.|.++
T Consensus        69 ~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~ga~V~~g~~IG~~  112 (196)
T PRK13627         69 DTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEE  112 (196)
T ss_pred             CCCCEECCCCEECCCcEEeeEEECCCCEECcCCccCCCcEECCC
Confidence            3478999999999999999999999999999998843 444443

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=93.41  E-value=0.19  Score=52.16  Aligned_cols=50  Identities=12%  Similarity=0.064  Sum_probs=43.5

Q ss_pred             CCcccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCc
Q 002861          195 ATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGT  244 (873)
Q Consensus       195 ~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~  244 (873)
                      +..+..|..++.|.+|+|+.++.|++++.|.+|.|+.++.|+.++.|...
T Consensus        22 IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~   71 (204)
T TIGR03308        22 LGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINAT   71 (204)
T ss_pred             eCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCC
Confidence            34445567778888999999999999999999999999999999999765

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

Probab=93.33  E-value=0.097  Score=55.03  Aligned_cols=74  Identities=12%  Similarity=0.121  Sum_probs=55.3

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      +.||+++..|+..++.    .+++.++++++.   ...++|++.+|+++         +|..|.+|+..           
T Consensus       104 ~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~v~~d~~~---------~v~~~~ek~~~-----------  160 (231)
T cd04183         104 FNCDQIVESDLLAFLAAFRERDLDGGVLTFFS---SHPRWSYVKLDENG---------RVIETAEKEPI-----------  160 (231)
T ss_pred             EecceeeccCHHHHHHHhhccCCceEEEEEeC---CCCCeEEEEECCCC---------CEEEeEEcCCC-----------
Confidence            3589999999888875    457788888775   45579999999877         78899888521           


Q ss_pred             CCccceeeceeeecch-HHHHHHh
Q 002861           77 DGRALLDTGIIAVRGK-AWEELVM   99 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~-~~~~ll~   99 (873)
                        ...+.+|+|+|+.+ .+.+++.
T Consensus       161 --~~~~~~Giy~~~~~~~~~~~l~  182 (231)
T cd04183         161 --SDLATAGLYYFKSGSLFVEAAK  182 (231)
T ss_pred             --CCccEeEEEEECcHHHHHHHHH
Confidence              23578999999987 4444443

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=93.32  E-value=0.21  Score=46.66  Aligned_cols=39  Identities=23%  Similarity=0.346  Sum_probs=29.7

Q ss_pred             eeeecCCceeCCCcEE-EEceeCCCeEECCCcEEeCcCCC
Q 002861          209 SSKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVVGTNFP  247 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~V-e~s~l~~~v~IG~~~iisg~~i~  247 (873)
                      +++|++++.|+++++| .+|+|++++.|+.+|++.+..+.
T Consensus        16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~   55 (119)
T cd03358          16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYP   55 (119)
T ss_pred             CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCC
Confidence            5677888888888888 46888888888888887765543

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=93.16  E-value=0.13  Score=47.16  Aligned_cols=47  Identities=15%  Similarity=-0.028  Sum_probs=27.7

Q ss_pred             eeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          210 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      +.|+.+|.|+.  .|++|+|++++.|+.+|.|.+++|..+          +.|.+++++
T Consensus        48 v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~----------v~ig~~~~~   94 (101)
T cd05635          48 TTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSW----------CNLGAGTNN   94 (101)
T ss_pred             CEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCC----------CEECCCcee
Confidence            34444444432  245777777777777777766666655          666666643

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=93.07  E-value=0.2  Score=50.58  Aligned_cols=32  Identities=22%  Similarity=0.372  Sum_probs=19.2

Q ss_pred             eeecCCceeCCCcEEE-EceeCCCeEECCCcEE
Q 002861          210 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIV  241 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~ii  241 (873)
                      ++|+++++|+++++|. +|+|+.++.||++|.|
T Consensus       109 ~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i  141 (197)
T cd03360         109 AVINPDARIGDNVIINTGAVIGHDCVIGDFVHI  141 (197)
T ss_pred             CEECCCCEECCCeEECCCCEECCCCEECCCCEE
Confidence            5556666666666663 5666655666655555

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=93.06  E-value=0.19  Score=49.68  Aligned_cols=50  Identities=14%  Similarity=0.372  Sum_probs=39.3

Q ss_pred             cccccceeEEe-----eeecCCceeCCCcEEEEceeCCCeEECCCcEEeC-cCCCC
Q 002861          199 SDIAASAVVLS-----SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG-TNFPE  248 (873)
Q Consensus       199 ~~i~~~~~V~~-----Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg-~~i~~  248 (873)
                      +.|..++.|..     ++|+.++.|++++.|+++.|++++.||.+|+|.. +.+..
T Consensus        46 ~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~  101 (154)
T cd04650          46 SNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLNGAKIGD  101 (154)
T ss_pred             CEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCCCEEeCCCEECC
Confidence            44555555543     7899999999999999999999999999999854 44433

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=93.05  E-value=0.18  Score=50.48  Aligned_cols=38  Identities=13%  Similarity=-0.000  Sum_probs=23.5

Q ss_pred             ecCCceeCCCcEEEEceeCCCeEECCCcEE-eCcCCCCC
Q 002861          212 IAHGVSIGEDSLIYDSNISSGIQIGSLSIV-VGTNFPEE  249 (873)
Q Consensus       212 l~~~v~v~~~s~Ve~s~l~~~v~IG~~~ii-sg~~i~~~  249 (873)
                      |++++.++.++.|.+++|++++.||.+|+| .++.|..+
T Consensus        69 IG~~~~i~~~~~i~~~~IGd~~~Ig~~a~I~~gv~Ig~~  107 (164)
T cd04646          69 IGSNNVFEVGCKCEALKIGNNNVFESKSFVGKNVIITDG  107 (164)
T ss_pred             ECCCCEECCCcEEEeeEECCCCEEeCCCEECCCCEECCC
Confidence            555666666666777777777777777766 33444443

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=92.87  E-value=0.19  Score=42.64  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=30.8

Q ss_pred             eeecCCceeCCCcEEEE-ceeCCCeEECCCcEEeCcCC
Q 002861          210 SKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIVVGTNF  246 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~-s~l~~~v~IG~~~iisg~~i  246 (873)
                      |++++++.|+++++|.. +.|++++.|+.+|.|.+...
T Consensus         1 ~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~   38 (78)
T cd00208           1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATG   38 (78)
T ss_pred             CEECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccC
Confidence            46788888999898887 88999999999999887543

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=92.73  E-value=0.14  Score=47.87  Aligned_cols=6  Identities=0%  Similarity=-0.136  Sum_probs=2.2

Q ss_pred             eeeCCC
Q 002861          260 FMLPDR  265 (873)
Q Consensus       260 ~~iP~~  265 (873)
                      +.|..+
T Consensus        74 ~~Ig~~   79 (119)
T cd03358          74 ASIGAN   79 (119)
T ss_pred             cEECcC
Confidence            333333

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=92.70  E-value=0.17  Score=58.66  Aligned_cols=50  Identities=22%  Similarity=0.183  Sum_probs=33.5

Q ss_pred             cccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861          199 SDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       199 ~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      ..|..++.|.+|+|+++|.|++ ++|++|+|+++++|+.+|.|.++.|..+
T Consensus       272 ~~I~~~~~i~~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~  321 (430)
T PRK14359        272 VRILGKSKIENSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNF  321 (430)
T ss_pred             CEECCCeEEEeeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCc
Confidence            3444555566677777777755 6667777777777777777777766554

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=92.59  E-value=0.16  Score=59.22  Aligned_cols=61  Identities=21%  Similarity=0.269  Sum_probs=45.1

Q ss_pred             ceeeecCCCcccccccceeEEeeeecCCceeCCCcEEE-EceeCCCeEECCCcEEeCcCCCCC
Q 002861          188 RHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       188 ~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      ..+.++.+.. ++.+..+.+.+|+|+.+|.|++++.|. +|+|++++.||+++.|.++++.++
T Consensus       293 ~~I~~~~I~~-~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~  354 (450)
T PRK14360        293 SLIENSQIGE-NVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEG  354 (450)
T ss_pred             cEEEEEEEcC-CCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCC
Confidence            3344444444 344456677888999999999999997 688899999999888887777654

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=92.53  E-value=0.14  Score=54.30  Aligned_cols=34  Identities=18%  Similarity=0.472  Sum_probs=18.5

Q ss_pred             eeecCCceeCCCcEEE-EceeCCCeEECCCcEEeC
Q 002861          210 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVG  243 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg  243 (873)
                      ++|+.+|.|++++.|. +|+|++++.||.+|.|.+
T Consensus       117 ~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~  151 (231)
T TIGR03532       117 AEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAG  151 (231)
T ss_pred             eEECCCCEEccccccCCCcEECCCcEEcCCcEEcc
Confidence            3445555555555553 555666666666666653

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=92.11  E-value=0.24  Score=57.90  Aligned_cols=49  Identities=27%  Similarity=0.493  Sum_probs=26.6

Q ss_pred             ccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEe-CcCCCCC
Q 002861          200 DIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       200 ~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      .|..++.|.+|+|+.+|.|+ ++.|.+|+|+.++.||++|.|. ++.|..+
T Consensus       291 ~I~~~~~i~~~~ig~~~~I~-~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~  340 (458)
T PRK14354        291 VIGPGSRIVDSTIGDGVTIT-NSVIEESKVGDNVTVGPFAHLRPGSVIGEE  340 (458)
T ss_pred             EECCCcEEeccEECCCCEEE-EEEEeCCEECCCcEECCceEecCCCEEeCC
Confidence            33344555555566666555 3455566666666666666655 4444433

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=91.93  E-value=0.19  Score=59.18  Aligned_cols=40  Identities=30%  Similarity=0.491  Sum_probs=36.1

Q ss_pred             eeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861          210 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      ++|+++|+|+++|.|++|+|++++.|+.++.|.++++.++
T Consensus       289 v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~  328 (481)
T PRK14358        289 TRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAG  328 (481)
T ss_pred             cEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCc
Confidence            3589999999999999999999999999999999988776

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

Probab=91.93  E-value=0.12  Score=54.23  Aligned_cols=79  Identities=14%  Similarity=0.068  Sum_probs=55.4

Q ss_pred             CCCCeeeccCC-CcCcCCCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCc
Q 002861            1 MTGDVLPCFDA-STMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGR   79 (873)
Q Consensus         1 ~~gD~i~~~d~-~~~~~~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~   79 (873)
                      +.||+++..+. ..+...+++.|++..+.+......+|+...|. +         ++..+.+||..++          ..
T Consensus        99 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~v~~~~~k~~~~~----------~~  158 (229)
T cd02523          99 LEGDVVFDPSILERLLSSPADNAILVDKKTKEWEDEYVKDLDDA-G---------VLLGIISKAKNLE----------EI  158 (229)
T ss_pred             EeCCEecCHHHHHHHHcCCCCCeEEEccCcccccccceeeecCc-c---------ceEeecccCCCcc----------hh
Confidence            36899886654 22334778899888875555666677654443 3         5889999997653          23


Q ss_pred             cceeeceeeecchHHHHHHh
Q 002861           80 ALLDTGIIAVRGKAWEELVM   99 (873)
Q Consensus        80 ~l~~~Gi~~f~~~~~~~ll~   99 (873)
                      ....+|+|+|+.+.+..+..
T Consensus       159 ~~~~~Giy~~~~~~~~~l~~  178 (229)
T cd02523         159 QGEYVGISKFSPEDADRLAE  178 (229)
T ss_pred             ceEEEeEEEECHHHHHHHHH
Confidence            47899999999998776654

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=91.91  E-value=0.27  Score=57.55  Aligned_cols=40  Identities=20%  Similarity=0.281  Sum_probs=31.4

Q ss_pred             eeecCCceeCCCcEEE-EceeCCCeEECCCcEEeCcCCCCC
Q 002861          210 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      ..+++++.|++++.|+ +++|++++.||.+|+|.++.|..+
T Consensus       269 v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~  309 (459)
T PRK14355        269 VVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDD  309 (459)
T ss_pred             eEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCC
Confidence            3467777777777776 477889999999999998888776

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=91.91  E-value=0.24  Score=53.10  Aligned_cols=32  Identities=22%  Similarity=0.319  Sum_probs=14.2

Q ss_pred             eeecCCceeCCCcEEEE-ceeCCCeEECCCcEE
Q 002861          210 SKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIV  241 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~-s~l~~~v~IG~~~ii  241 (873)
                      +.+..++.|++++.|.. ++|+++++||+||.|
T Consensus       124 ~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I  156 (269)
T TIGR00965       124 SYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHL  156 (269)
T ss_pred             eEEcCCcEECCCCEECCCcEECCCCEECCCCEE
Confidence            33444444444444443 444444444444444

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=91.87  E-value=0.32  Score=48.47  Aligned_cols=49  Identities=14%  Similarity=0.171  Sum_probs=38.7

Q ss_pred             eeecCCceeCCCcEEEEc-------------eeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          210 SKIAHGVSIGEDSLIYDS-------------NISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~s-------------~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      ..|+.+|.|+++++|..+             +|++++.||.+|+|.++.+..+          +.|.+++.+
T Consensus        43 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~----------v~Ig~~~~I  104 (161)
T cd03359          43 VSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSY----------VHIGKNCVI  104 (161)
T ss_pred             eEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCC----------cEECCCCEE
Confidence            578899999999998854             6888899999999988887776          666666543

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=91.87  E-value=0.22  Score=50.00  Aligned_cols=32  Identities=28%  Similarity=0.498  Sum_probs=15.9

Q ss_pred             CceeCCCcEE-EEceeCCCeEECCCcEE-eCcCC
Q 002861          215 GVSIGEDSLI-YDSNISSGIQIGSLSIV-VGTNF  246 (873)
Q Consensus       215 ~v~v~~~s~V-e~s~l~~~v~IG~~~ii-sg~~i  246 (873)
                      .+.|+++++| .+|.|+++++||++|+| .++.+
T Consensus       118 ~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV  151 (169)
T cd03357         118 PITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVV  151 (169)
T ss_pred             CcEeCCCEEECCCCEEeCCCEECCCCEECCCCEE
Confidence            4455555555 34444555555555555 34443

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=91.83  E-value=0.66  Score=45.22  Aligned_cols=38  Identities=21%  Similarity=0.437  Sum_probs=26.3

Q ss_pred             ceeEEe------eeecCCceeCCCcEEEEceeCCC----eEECCCcEEe
Q 002861          204 SAVVLS------SKIAHGVSIGEDSLIYDSNISSG----IQIGSLSIVV  242 (873)
Q Consensus       204 ~~~V~~------Svl~~~v~v~~~s~Ve~s~l~~~----v~IG~~~iis  242 (873)
                      ..+++|      ++++.+|.|++++.|. +.+.++    +.||++|.|-
T Consensus        36 ~~~iIn~~ig~~a~Ighd~~IG~~~~I~-~~l~G~~~~pV~IG~~~~IG   83 (147)
T cd04649          36 GNCMVEGRISSGVIVGKGSDVGGGASIM-GTLSGGGNNVISIGKRCLLG   83 (147)
T ss_pred             CCeEECCcccCCEEECCCCEECCCCEEE-EECCCCcccCEEECCCCEEC
Confidence            345656      7888888888888888 665555    6666655554

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=91.39  E-value=0.32  Score=52.22  Aligned_cols=40  Identities=25%  Similarity=0.269  Sum_probs=25.0

Q ss_pred             eeecCCceeCCCcEE---------EEceeCCCeEECCCcEEe-CcCCCCC
Q 002861          210 SKIAHGVSIGEDSLI---------YDSNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~V---------e~s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      ++|+.+|.|+.++.|         ..++|+++|.||.||.|. |+.|.++
T Consensus       148 v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~g  197 (269)
T TIGR00965       148 AQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEG  197 (269)
T ss_pred             CEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCC
Confidence            355556666665555         346777777777777775 5555544

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=91.39  E-value=0.32  Score=56.69  Aligned_cols=41  Identities=20%  Similarity=0.347  Sum_probs=36.5

Q ss_pred             eeeecCCceeCCCcEEEEceeCCCeEECCCcEEe-CcCCCCC
Q 002861          209 SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      ++.|+.+|.|++++.|++|+|+.+++||.+|+|. ++.|..+
T Consensus       286 ~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~  327 (446)
T PRK14353        286 GVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEG  327 (446)
T ss_pred             CCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCC
Confidence            3679999999999999999999999999999997 6766654

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=91.21  E-value=0.59  Score=46.85  Aligned_cols=40  Identities=23%  Similarity=0.302  Sum_probs=28.5

Q ss_pred             eeecCCceeCCCcEEEE-ceeCCCeEECCCcEEeCcCCCCC
Q 002861          210 SKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~-s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      ..|+.++.|++++.|.. ++|++++.||.+|.|.++.|.++
T Consensus        65 v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~~  105 (167)
T cd00710          65 VWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDN  105 (167)
T ss_pred             EEECCCceECCCCEEeCCEEECCCCEECCCCEEECCEECCC
Confidence            45667777777777765 77777777777777776666555

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=91.16  E-value=0.28  Score=49.42  Aligned_cols=30  Identities=23%  Similarity=0.282  Sum_probs=11.7

Q ss_pred             ecCCceeCCCcEEE-EceeCCCeEECCCcEE
Q 002861          212 IAHGVSIGEDSLIY-DSNISSGIQIGSLSIV  241 (873)
Q Consensus       212 l~~~v~v~~~s~Ve-~s~l~~~v~IG~~~ii  241 (873)
                      |+.++.|++++.|+ +|+|+.++.|+.+|+|
T Consensus       117 ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i  147 (197)
T cd03360         117 IGDNVIINTGAVIGHDCVIGDFVHIAPGVVL  147 (197)
T ss_pred             ECCCeEECCCCEECCCCEECCCCEECCCCEE
Confidence            33344444344432 2334444444444433

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=90.86  E-value=0.42  Score=47.84  Aligned_cols=40  Identities=15%  Similarity=0.032  Sum_probs=28.2

Q ss_pred             eeecCCceeCCCcEEEEce-----------eCCCeEECCCcEEeCcCCCCC
Q 002861          210 SKIAHGVSIGEDSLIYDSN-----------ISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~s~-----------l~~~v~IG~~~iisg~~i~~~  249 (873)
                      ++|+.+|.|+++++|.++.           |++++.|+.+|.|.++.|..+
T Consensus        39 i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~   89 (164)
T cd04646          39 IIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNN   89 (164)
T ss_pred             eEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCC
Confidence            4788888888999888764           445555555666777666555

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=90.85  E-value=0.3  Score=44.74  Aligned_cols=42  Identities=17%  Similarity=0.044  Sum_probs=37.2

Q ss_pred             ceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcC
Q 002861          204 SAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTN  245 (873)
Q Consensus       204 ~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~  245 (873)
                      ++.|-+|+|.+++.+..+++|.+|+|++++.||.++..+++-
T Consensus        57 g~~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~~~~~   98 (101)
T cd05635          57 GGEVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNNSDLK   98 (101)
T ss_pred             CCEECccEEcCCCEecCcCEEeeeEECCCCEECCCceecccc
Confidence            345679999999999999999999999999999999998764

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=90.68  E-value=0.3  Score=35.34  Aligned_cols=31  Identities=29%  Similarity=0.477  Sum_probs=18.9

Q ss_pred             eecCCceeCCCcEEEEceeCCCeEECCCcEEe
Q 002861          211 KIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV  242 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis  242 (873)
                      .++.+|.|+++|+| ...|++++.|+.|+.|+
T Consensus         3 ~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I~   33 (34)
T PF14602_consen    3 TIGDNCFIGANSTI-GITIGDGVIIGAGVVIT   33 (34)
T ss_dssp             EE-TTEEE-TT-EE-TSEE-TTEEE-TTEEEE
T ss_pred             EECCCEEECccccc-CCEEcCCCEECCCCEEc
Confidence            46778888888887 46677777777777765

...

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=90.55  E-value=0.57  Score=42.79  Aligned_cols=17  Identities=41%  Similarity=0.616  Sum_probs=9.8

Q ss_pred             eeecCCceeCCCcEEEE
Q 002861          210 SKIAHGVSIGEDSLIYD  226 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~  226 (873)
                      +.|++++.|+++++|.+
T Consensus        22 v~IG~~~~Ig~~~~i~~   38 (109)
T cd04647          22 ITIGDNVLIGPNVTIYD   38 (109)
T ss_pred             eEECCCCEECCCCEEEC
Confidence            45556666666666543

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=89.93  E-value=0.74  Score=46.16  Aligned_cols=39  Identities=21%  Similarity=0.366  Sum_probs=25.6

Q ss_pred             eecCCceeCCCcEEEEceeCCCeEECCCcEEeC-cCCCCC
Q 002861          211 KIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG-TNFPEE  249 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg-~~i~~~  249 (873)
                      .|+++|+||.+++|.-|.|++++-||=|++|.+ +.|.++
T Consensus        74 ~IG~~vtIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~  113 (176)
T COG0663          74 TIGDDVTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDG  113 (176)
T ss_pred             EECCCcEEcCccEEEEeEECCCcEEecCceEeCCcEECCC
Confidence            566666666666666676666666666666665 555554

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=89.64  E-value=0.39  Score=53.52  Aligned_cols=34  Identities=21%  Similarity=0.332  Sum_probs=20.4

Q ss_pred             eeeecCCceeCCCcEEE-EceeCCCeEECCCcEEe
Q 002861          209 SSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV  242 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iis  242 (873)
                      +++|+.+|.|++++.|. +|+|++++.|+++|.|.
T Consensus       139 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg  173 (324)
T TIGR01853       139 DVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIG  173 (324)
T ss_pred             cceeCCCceECCCcEECCCCEECCCCEECCCcEEC
Confidence            45555556666666664 56666666666666663

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=89.39  E-value=0.74  Score=44.58  Aligned_cols=50  Identities=20%  Similarity=0.222  Sum_probs=33.4

Q ss_pred             eeeecCCceeCCCcEEE---------EceeCCCeEECCCcEE-eCcCCCCCCCCCccCccceeeCCCeee
Q 002861          209 SSKIAHGVSIGEDSLIY---------DSNISSGIQIGSLSIV-VGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve---------~s~l~~~v~IG~~~ii-sg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      +++|+.+|.|++++.|.         +++|++++.||+++.| .++.|.++          +.|.+++++
T Consensus        49 ~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~----------~~Ig~g~~V  108 (139)
T cd03350          49 CAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKG----------AVLAAGVVL  108 (139)
T ss_pred             CCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCCCEECCC----------CEEcCCCEE
Confidence            45677777777777774         3667777777777777 46666665          666666644

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=89.38  E-value=0.37  Score=50.36  Aligned_cols=65  Identities=15%  Similarity=0.212  Sum_probs=47.4

Q ss_pred             CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccceeeceeeecchHHHH
Q 002861           17 PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE   96 (873)
Q Consensus        17 ~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~   96 (873)
                      .++++++.+.++.  ....+|+...|+++         +|.+|.+||...+-       ++...++.+|+|+|+.+.+.+
T Consensus       118 ~~~~~~~~~~~~~--~p~~~~~~~~~~~~---------~v~~~~ek~~~~~~-------~~~~~~~~~giy~~~~~~~~~  179 (229)
T cd02540         118 AGADVTVLTAELE--DPTGYGRIIRDGNG---------KVLRIVEEKDATEE-------EKAIREVNAGIYAFDAEFLFE  179 (229)
T ss_pred             cCCcEEEEEEEcC--CCCCccEEEEcCCC---------CEEEEEECCCCChH-------HHhhceEEeEEEEEEHHHHHH
Confidence            4578888877765  34689998888766         79999999864310       112347899999999988877


Q ss_pred             HHh
Q 002861           97 LVM   99 (873)
Q Consensus        97 ll~   99 (873)
                      ++.
T Consensus       180 ~l~  182 (229)
T cd02540         180 ALP  182 (229)
T ss_pred             HHH
Confidence            775

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=89.15  E-value=0.57  Score=50.65  Aligned_cols=14  Identities=36%  Similarity=0.264  Sum_probs=5.7

Q ss_pred             eeCCCeEECCCcEE
Q 002861          228 NISSGIQIGSLSIV  241 (873)
Q Consensus       228 ~l~~~v~IG~~~ii  241 (873)
                      +|++++.||.+|.|
T Consensus       178 iIgDnv~IGa~s~I  191 (272)
T PRK11830        178 IIEDNCFIGARSEV  191 (272)
T ss_pred             EEcCCCEECCCCEE
Confidence            33444444444433

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=89.03  E-value=0.64  Score=52.61  Aligned_cols=41  Identities=24%  Similarity=0.344  Sum_probs=35.8

Q ss_pred             eeeecCCceeCCCcEEEE-ceeCCCeEECCCcEEeCcCCCCC
Q 002861          209 SSKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve~-s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      .-++++++.|++++.|+. |+|+++++||.++.|.+.+|..+
T Consensus       261 p~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~  302 (358)
T COG1208         261 PVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDN  302 (358)
T ss_pred             CEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcC
Confidence            346888999999998886 99999999999999999998776

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=88.75  E-value=0.54  Score=47.87  Aligned_cols=14  Identities=36%  Similarity=0.608  Sum_probs=5.6

Q ss_pred             eecCCceeCCCcEE
Q 002861          211 KIAHGVSIGEDSLI  224 (873)
Q Consensus       211 vl~~~v~v~~~s~V  224 (873)
                      +|++++.|+++++|
T Consensus       113 ~i~~~~~ig~~~~i  126 (201)
T TIGR03570       113 VINPDVRIGDNVII  126 (201)
T ss_pred             EECCCCEECCCcEE
Confidence            33333444444443

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=88.55  E-value=0.63  Score=48.06  Aligned_cols=9  Identities=0%  Similarity=0.217  Sum_probs=4.3

Q ss_pred             eeeCCCeee
Q 002861          260 FMLPDRHCL  268 (873)
Q Consensus       260 ~~iP~~~~i  268 (873)
                      +.|.+++++
T Consensus        62 ~~I~~~~~i   70 (205)
T cd03352          62 VIIHSGAVI   70 (205)
T ss_pred             cEECCCCEE
Confidence            445554443

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PLN02694 serine O-acetyltransferase

Probab=88.49  E-value=0.96  Score=49.20  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=10.6

Q ss_pred             ceeCCCeEECCCcEE-eCcCCCC
Q 002861          227 SNISSGIQIGSLSIV-VGTNFPE  248 (873)
Q Consensus       227 s~l~~~v~IG~~~ii-sg~~i~~  248 (873)
                      ++|+++|.||.||.| -++.|..
T Consensus       213 piIGd~V~IGagA~Ilggi~IGd  235 (294)
T PLN02694        213 PKIGDGVLIGAGATILGNVKIGE  235 (294)
T ss_pred             cEECCCeEECCeeEECCCCEECC
Confidence            445555555555555 3344433

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=88.29  E-value=0.49  Score=52.76  Aligned_cols=49  Identities=18%  Similarity=0.302  Sum_probs=33.1

Q ss_pred             eeecCCceeCCCcEE-EEceeCCCeEECCCcEEe-CcCCCCCCCCCccCccceeeCCCeee
Q 002861          210 SKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVV-GTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       210 Svl~~~v~v~~~s~V-e~s~l~~~v~IG~~~iis-g~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      ++|+.+|.|+++++| .+++|++++.|+.+|.|. ++.|.++          +.|.++++|
T Consensus       122 v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~----------~~I~~~~vI  172 (324)
T TIGR01853       122 VEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKN----------VIIHSGAVI  172 (324)
T ss_pred             cEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCC----------CEECCCcEE
Confidence            356666666666666 467777777777777776 6776665          777777655

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=88.07  E-value=0.8  Score=46.63  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=15.5

Q ss_pred             eeecCCceeCCCcEEE-EceeCCCeEECCCcEEe
Q 002861          210 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV  242 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iis  242 (873)
                      ++|+.+|.|++++.|+ +|+|+.++.||.++.|.
T Consensus       118 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~  151 (201)
T TIGR03570       118 VRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLS  151 (201)
T ss_pred             CEECCCcEECCCCEEcCCCEECCCCEECCCCEEe
Confidence            3444444444444444 24444444444444444

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=88.05  E-value=0.49  Score=50.11  Aligned_cols=49  Identities=14%  Similarity=0.305  Sum_probs=36.9

Q ss_pred             eeeecCCceeCCCcEEEE---------ceeCCCeEECCCcEE-eCcCCCCCCCCCccCccceeeCCCee
Q 002861          209 SSKIAHGVSIGEDSLIYD---------SNISSGIQIGSLSIV-VGTNFPEEAGSTAEDSFRFMLPDRHC  267 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve~---------s~l~~~v~IG~~~ii-sg~~i~~~~~~~~~~~~~~~iP~~~~  267 (873)
                      +|+|+.+|.|++++.|.+         ++|++++.||.+++| .++.|..+          +.|++|+.
T Consensus       134 ~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~----------~~Igagsv  192 (231)
T TIGR03532       134 RATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKG----------AVVAAGAI  192 (231)
T ss_pred             CcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCC----------CEECCCCE
Confidence            677888888888888874         777888888888887 47777665          66766664

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=87.71  E-value=0.64  Score=47.43  Aligned_cols=28  Identities=32%  Similarity=0.514  Sum_probs=15.3

Q ss_pred             CCceeCCCcEE-EEceeCCCeEECCCcEE
Q 002861          214 HGVSIGEDSLI-YDSNISSGIQIGSLSIV  241 (873)
Q Consensus       214 ~~v~v~~~s~V-e~s~l~~~v~IG~~~ii  241 (873)
                      ..+.|++++|| .+++|.++++||++|+|
T Consensus       128 ~~v~IGd~v~IG~~a~I~~gv~IG~~~vI  156 (183)
T PRK10092        128 KPVTIGNNVWIGGRAVINPGVTIGDNVVV  156 (183)
T ss_pred             CCeEECCCcEECCCCEECCCCEECCCCEE
Confidence            34555555555 44555555555555555

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=87.26  E-value=0.77  Score=53.51  Aligned_cols=22  Identities=14%  Similarity=0.210  Sum_probs=9.7

Q ss_pred             Cccceeecee-eecchHHHHHHh
Q 002861           78 GRALLDTGII-AVRGKAWEELVM   99 (873)
Q Consensus        78 ~~~l~~~Gi~-~f~~~~~~~ll~   99 (873)
                      +.+++..|-. +++...+.+++.
T Consensus        90 ~~vlv~~gD~p~i~~~~i~~l~~  112 (448)
T PRK14357         90 DDLLILYGDVPLISENTLKRLIE  112 (448)
T ss_pred             CeEEEEeCCcccCCHHHHHHHHH
Confidence            3444444432 344444455544

>PLN02357 serine acetyltransferase

Probab=86.36  E-value=1.1  Score=49.98  Aligned_cols=23  Identities=22%  Similarity=0.426  Sum_probs=14.5

Q ss_pred             ceeCCCeEECCCcEEe-CcCCCCC
Q 002861          227 SNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       227 s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      ++|+++|.||.|++|. ++.|..+
T Consensus       279 piIGd~V~IGagA~IlggV~IGdg  302 (360)
T PLN02357        279 PKIGDGVLIGAGTCILGNITIGEG  302 (360)
T ss_pred             ceeCCCeEECCceEEECCeEECCC
Confidence            5667777777776653 4555554

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=86.12  E-value=1.4  Score=44.27  Aligned_cols=67  Identities=24%  Similarity=0.313  Sum_probs=46.3

Q ss_pred             ccccccceeEEeeeecCCceeCCCcEEEE-ceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeeeeeeecCc
Q 002861          198 VSDIAASAVVLSSKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGC  276 (873)
Q Consensus       198 ~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~-s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~~v~l~~~  276 (873)
                      ...|..++.|.-+.|+.+|.||=+|+|-+ ++|+.++.||.|+.|+..               -.+|++.    +++ |.
T Consensus        78 ~vtIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~---------------k~~p~~~----L~~-G~  137 (176)
T COG0663          78 DVTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPG---------------KEIPGGS----LVV-GS  137 (176)
T ss_pred             CcEEcCccEEEEeEECCCcEEecCceEeCCcEECCCcEEccCCcccCC---------------cCCCCCe----Eee-cC
Confidence            34555666677777888888888888877 888888888888777654               3577777    444 44


Q ss_pred             ceEEEEEe
Q 002861          277 TERVLVYC  284 (873)
Q Consensus       277 ~~~v~~~~  284 (873)
                      ...+.+..
T Consensus       138 Pak~~r~l  145 (176)
T COG0663         138 PAKVVRPL  145 (176)
T ss_pred             cceeeecC
Confidence            55555554

>TIGR01172 cysE serine O-acetyltransferase

Probab=85.69  E-value=1.4  Score=44.02  Aligned_cols=31  Identities=26%  Similarity=0.505  Sum_probs=13.3

Q ss_pred             eecCCceeCCCcEEEE-ceeCCCeEECCCcEE
Q 002861          211 KIAHGVSIGEDSLIYD-SNISSGIQIGSLSIV  241 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve~-s~l~~~v~IG~~~ii  241 (873)
                      +|+.+|.|+++++|.. ++|++++.||.++.|
T Consensus       115 ~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V  146 (162)
T TIGR01172       115 TVGEGVMIGAGAKVLGNIEVGENAKIGANSVV  146 (162)
T ss_pred             EECCCcEEcCCCEEECCcEECCCCEECCCCEE
Confidence            4444444444444433 334444444444444

Cysteine biosynthesis

>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=85.58  E-value=1  Score=48.19  Aligned_cols=83  Identities=22%  Similarity=0.209  Sum_probs=55.3

Q ss_pred             CCCeeeccCC---CcCcC--CC-CceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCccc
Q 002861            2 TGDVLPCFDA---STMIL--PE-DASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAIL   75 (873)
Q Consensus         2 ~gD~i~~~d~---~~~~~--~~-a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~   75 (873)
                      -||+|+.-+.   .||+.  .. -.-++...++|.+..+.+||+.....-  +.+  ..+|++|.|||+.++-+      
T Consensus       130 L~Ddl~~~~~~~l~qmi~~ye~~g~svi~v~ev~~e~v~kYGvi~~g~~~--~~~--~~~v~~~VEKP~~~~AP------  199 (291)
T COG1210         130 LPDDLVDSEKPCLKQMIELYEETGGSVIGVEEVPPEDVSKYGVIDPGEPV--EKG--VYKVKGMVEKPKPEEAP------  199 (291)
T ss_pred             eCCeeecCCchHHHHHHHHHHHhCCcEEEEEECCHHHCcccceEecCccc--cCC--eEEEEEEEECCCCCCCC------
Confidence            3677666542   23444  22 234667778899999999999832221  111  12799999999887522      


Q ss_pred             CCCccceeeceeeecchHHHHH
Q 002861           76 DDGRALLDTGIIAVRGKAWEEL   97 (873)
Q Consensus        76 ~~~~~l~~~Gi~~f~~~~~~~l   97 (873)
                         .-++.+|-|+|+++.+..|
T Consensus       200 ---Snlai~GRYil~p~IFd~L  218 (291)
T COG1210         200 ---SNLAIVGRYVLTPEIFDIL  218 (291)
T ss_pred             ---cceeeeeeeecCHHHHHHH
Confidence               4488999999999977543

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=85.42  E-value=1.6  Score=47.19  Aligned_cols=16  Identities=25%  Similarity=0.069  Sum_probs=7.1

Q ss_pred             eeecCCceeCCCcEEE
Q 002861          210 SKIAHGVSIGEDSLIY  225 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve  225 (873)
                      ++|+.++.|+++++|.
T Consensus        81 v~IG~~~~I~e~~~I~   96 (262)
T PRK05289         81 LVIGDNNTIREFVTIN   96 (262)
T ss_pred             EEECCCCEECCCeEEe
Confidence            3344444444444444

>TIGR01172 cysE serine O-acetyltransferase

Probab=85.41  E-value=1.1  Score=44.64  Aligned_cols=40  Identities=23%  Similarity=0.344  Sum_probs=25.3

Q ss_pred             eeecCCceeCCCcEEEE---------ceeCCCeEECCCcEEeC-cCCCCC
Q 002861          210 SKIAHGVSIGEDSLIYD---------SNISSGIQIGSLSIVVG-TNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~---------s~l~~~v~IG~~~iisg-~~i~~~  249 (873)
                      ++|+.+|.|++++.|..         ++|+++|.||.+|.|.+ +.|..+
T Consensus        88 ~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~  137 (162)
T TIGR01172        88 AVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGEN  137 (162)
T ss_pred             CEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCC
Confidence            45555555555555543         47788888888888766 444443

Cysteine biosynthesis

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=85.36  E-value=0.67  Score=52.30  Aligned_cols=41  Identities=32%  Similarity=0.429  Sum_probs=26.3

Q ss_pred             eeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861          209 SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      +++|+.+|.||++|+|.+|.|++++.|-+.|.|.++.+..+
T Consensus       286 ~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~  326 (460)
T COG1207         286 NTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG  326 (460)
T ss_pred             eEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCC
Confidence            34566666666666666666666666666666666666544

>PRK10502 putative acyl transferase; Provisional

Probab=85.16  E-value=1.3  Score=45.08  Aligned_cols=6  Identities=33%  Similarity=0.634  Sum_probs=2.6

Q ss_pred             cccCcc
Q 002861          299 TFCGKP  304 (873)
Q Consensus       299 t~~g~~  304 (873)
                      .+.|.|
T Consensus       166 v~~G~P  171 (182)
T PRK10502        166 ICRGNP  171 (182)
T ss_pred             EEECCc
Confidence            344444

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=85.13  E-value=1.5  Score=42.89  Aligned_cols=42  Identities=10%  Similarity=0.223  Sum_probs=29.3

Q ss_pred             cccceeEEe-eeecCCceeCCCcEEE-----EceeCCCeEECCCcEEe
Q 002861          201 IAASAVVLS-SKIAHGVSIGEDSLIY-----DSNISSGIQIGSLSIVV  242 (873)
Q Consensus       201 i~~~~~V~~-Svl~~~v~v~~~s~Ve-----~s~l~~~v~IG~~~iis  242 (873)
                      +..|+.|.. +++..++.|++++.|.     .|.|+.++.||.+|.|.
T Consensus        16 IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~   63 (147)
T cd04649          16 LAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM   63 (147)
T ss_pred             ECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEE
Confidence            444555544 6778888888888875     46677777777777777

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=84.53  E-value=1.5  Score=48.35  Aligned_cols=9  Identities=0%  Similarity=0.217  Sum_probs=5.2

Q ss_pred             eeeCCCeee
Q 002861          260 FMLPDRHCL  268 (873)
Q Consensus       260 ~~iP~~~~i  268 (873)
                      +.|-+|++|
T Consensus       172 v~I~~GavI  180 (338)
T COG1044         172 VIIHSGAVI  180 (338)
T ss_pred             eEECCCCEE
Confidence            666666643

>PLN02694 serine O-acetyltransferase

Probab=83.98  E-value=1.1  Score=48.86  Aligned_cols=37  Identities=35%  Similarity=0.441  Sum_probs=30.4

Q ss_pred             EEeeeecCCceeCCCcEE-EEceeCCCeEECCCcEEeC
Q 002861          207 VLSSKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVVG  243 (873)
Q Consensus       207 V~~Svl~~~v~v~~~s~V-e~s~l~~~v~IG~~~iisg  243 (873)
                      ..+++|+.+|.|+.++.| .++.|++++.||.+++|.+
T Consensus       210 ~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~k  247 (294)
T PLN02694        210 DRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLI  247 (294)
T ss_pred             CCccEECCCeEECCeeEECCCCEECCCCEECCCCEECC
Confidence            346788899999998888 7888888888888888864

>PRK10191 putative acyl transferase; Provisional

Probab=83.82  E-value=1.6  Score=42.84  Aligned_cols=39  Identities=18%  Similarity=0.385  Sum_probs=21.2

Q ss_pred             eecCCceeCCCcEEEE--------ceeCCCeEECCCcEEeC-cCCCCC
Q 002861          211 KIAHGVSIGEDSLIYD--------SNISSGIQIGSLSIVVG-TNFPEE  249 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve~--------s~l~~~v~IG~~~iisg-~~i~~~  249 (873)
                      +++.+|.|+.++.|++        ++|++++.||.+|.|.+ +.|..+
T Consensus        69 ~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~  116 (146)
T PRK10191         69 VAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNN  116 (146)
T ss_pred             EECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCC
Confidence            4555555555555542        25566666666666653 444443

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=83.65  E-value=1.8  Score=45.84  Aligned_cols=70  Identities=21%  Similarity=0.155  Sum_probs=48.3

Q ss_pred             CCCceEEEEEec-Cc---cccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcc--cCCCccceeeceeeec
Q 002861           17 PEDASCIITVPI-TL---DIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAI--LDDGRALLDTGIIAVR   90 (873)
Q Consensus        17 ~~a~vtv~a~p~-~~---~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~--~~~~~~l~~~Gi~~f~   90 (873)
                      +++++++++.+. ++   ..-...||+ +|+++         +|..|.+||..++-   .+.  ..+...+..+|+|+|+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~-~d~~g---------~v~~~~e~~~~~~~---~~~~~~~~~~~~~~~Giy~~~  185 (245)
T PRK05450        119 PEADMATLAVPIHDAEEAFNPNVVKVV-LDADG---------RALYFSRAPIPYGR---DAFADSAPTPVYRHIGIYAYR  185 (245)
T ss_pred             CCCCeEeeeeecCCHHHhcCcCCCEEE-eCCCC---------cEEEecCCCCCCCC---CccccccCccccEEEEEEecC
Confidence            357888888777 32   334557887 78777         79999999954320   010  0123478999999999


Q ss_pred             chHHHHHHh
Q 002861           91 GKAWEELVM   99 (873)
Q Consensus        91 ~~~~~~ll~   99 (873)
                      .+.+..+..
T Consensus       186 ~~~l~~~~~  194 (245)
T PRK05450        186 RGFLRRFVS  194 (245)
T ss_pred             HHHHHHHHh
Confidence            998888765

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=83.54  E-value=1.7  Score=46.85  Aligned_cols=33  Identities=24%  Similarity=0.303  Sum_probs=19.6

Q ss_pred             eeecCCceeCCCcEEE-EceeCCCeEECCCcEEe
Q 002861          210 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV  242 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iis  242 (873)
                      ++++++|.|+++++|. +++|.+++.||++|.|.
T Consensus        24 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~   57 (255)
T PRK12461         24 AVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIH   57 (255)
T ss_pred             CEECCCCEECCCcEEccCCEEeCCCEECCCCEEc
Confidence            4456666666666665 55556666666666553

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=83.45  E-value=1.7  Score=46.97  Aligned_cols=44  Identities=16%  Similarity=0.252  Sum_probs=22.5

Q ss_pred             cccceeEEeeeec------CCceeCCCcEEEE-ceeCCCeEECCCcEEeCc
Q 002861          201 IAASAVVLSSKIA------HGVSIGEDSLIYD-SNISSGIQIGSLSIVVGT  244 (873)
Q Consensus       201 i~~~~~V~~Svl~------~~v~v~~~s~Ve~-s~l~~~v~IG~~~iisg~  244 (873)
                      |..++.|+.+.++      +++.|+.++.|.+ |+|+.+++|+.+++|.++
T Consensus       118 Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~  168 (272)
T PRK11830        118 IAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGV  168 (272)
T ss_pred             ECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCC
Confidence            4445555544444      4444444444444 355566666666655543

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=83.39  E-value=1.2  Score=50.02  Aligned_cols=10  Identities=20%  Similarity=0.511  Sum_probs=6.9

Q ss_pred             ceeecCCHHH
Q 002861           58 DLLQKPNVDE   67 (873)
Q Consensus        58 ~fl~KPs~~~   67 (873)
                      .|+.+|...+
T Consensus        39 sFl~~~k~~~   48 (343)
T PRK00892         39 SFLANPKYRK   48 (343)
T ss_pred             EEEcCchhHH
Confidence            4888887644

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=83.06  E-value=3  Score=41.82  Aligned_cols=39  Identities=28%  Similarity=0.484  Sum_probs=24.3

Q ss_pred             eecCCceeCCCcEEE-------------------EceeCCCeEECCCcEEe-CcCCCCC
Q 002861          211 KIAHGVSIGEDSLIY-------------------DSNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve-------------------~s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      .|+.+|.|++++.|.                   .++|++++.||.+|+|- ++.|.++
T Consensus        84 ~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~  142 (169)
T cd03357          84 TIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGDN  142 (169)
T ss_pred             EECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEECCC
Confidence            567777777777774                   34566666666666653 4555444

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=82.99  E-value=1.5  Score=45.17  Aligned_cols=11  Identities=55%  Similarity=1.008  Sum_probs=4.0

Q ss_pred             CCceeCCCcEE
Q 002861          214 HGVSIGEDSLI  224 (873)
Q Consensus       214 ~~v~v~~~s~V  224 (873)
                      ++++|+++++|
T Consensus        36 ~~~~Ig~~~~i   46 (205)
T cd03352          36 DGVVIGDDCVI   46 (205)
T ss_pred             CCCEECCCCEE
Confidence            33333333333

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=82.84  E-value=1.7  Score=49.00  Aligned_cols=13  Identities=23%  Similarity=0.340  Sum_probs=5.0

Q ss_pred             eCCCeEECCCcEE
Q 002861          229 ISSGIQIGSLSIV  241 (873)
Q Consensus       229 l~~~v~IG~~~ii  241 (873)
                      |++++.|+.+|.|
T Consensus       169 Ig~~~~I~~~~~I  181 (343)
T PRK00892        169 IGNRVIIHSGAVI  181 (343)
T ss_pred             ECCCCEECCCCEE
Confidence            3333333333333

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=82.71  E-value=1.5  Score=39.80  Aligned_cols=31  Identities=23%  Similarity=0.431  Sum_probs=15.6

Q ss_pred             cCCceeCCCcE---EEEceeCCCeEECCCcEEeC
Q 002861          213 AHGVSIGEDSL---IYDSNISSGIQIGSLSIVVG  243 (873)
Q Consensus       213 ~~~v~v~~~s~---Ve~s~l~~~v~IG~~~iisg  243 (873)
                      ..+++|+.++.   +.+++|++++.||.++.+..
T Consensus        38 ~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~   71 (101)
T cd03354          38 YQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILG   71 (101)
T ss_pred             cCCCEECCCccCCcCCCCEECCCcEEcCCCEEEC
Confidence            34444444442   44445556666666665554

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=82.29  E-value=2.4  Score=43.30  Aligned_cols=39  Identities=18%  Similarity=0.406  Sum_probs=22.2

Q ss_pred             eecCCceeCCCcEEE-------------------EceeCCCeEECCCcEEe-CcCCCCC
Q 002861          211 KIAHGVSIGEDSLIY-------------------DSNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve-------------------~s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      .|+.+|.|++++.|.                   ..+|++++.||.+|+|. ++.|.++
T Consensus        95 ~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~  153 (183)
T PRK10092         95 RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDN  153 (183)
T ss_pred             EECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEECCC
Confidence            466677777776664                   23455555555555553 4444444

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=81.93  E-value=2.6  Score=45.52  Aligned_cols=35  Identities=14%  Similarity=-0.018  Sum_probs=18.6

Q ss_pred             eeecCCceeCCCcEEE-------------EceeCCCeEECCCcEEeCc
Q 002861          210 SKIAHGVSIGEDSLIY-------------DSNISSGIQIGSLSIVVGT  244 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve-------------~s~l~~~v~IG~~~iisg~  244 (873)
                      ++|+.+|.|+++++|.             +++|++++.|+++|.|.+.
T Consensus        51 ~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~   98 (262)
T PRK05289         51 TTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRG   98 (262)
T ss_pred             cEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecc
Confidence            4455555555555553             3555555555555555543

>PLN02739 serine acetyltransferase

Probab=81.26  E-value=1.8  Score=48.20  Aligned_cols=40  Identities=20%  Similarity=0.285  Sum_probs=22.7

Q ss_pred             eeecCCceeCCCcEEE---------EceeCCCeEECCCcEEeC-cCCCCC
Q 002861          210 SKIAHGVSIGEDSLIY---------DSNISSGIQIGSLSIVVG-TNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve---------~s~l~~~v~IG~~~iisg-~~i~~~  249 (873)
                      ++|+.+|+|..+++|.         +..|+++|.||.|+.|.+ +.|..+
T Consensus       232 avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~  281 (355)
T PLN02739        232 AVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAG  281 (355)
T ss_pred             CEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCC
Confidence            3455555555555553         356667777777776654 444443

>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=80.87  E-value=1.7  Score=47.58  Aligned_cols=64  Identities=19%  Similarity=0.328  Sum_probs=48.6

Q ss_pred             cccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccceeeceeeecchHHHHHHhhhc
Q 002861           33 ASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSC  102 (873)
Q Consensus        33 a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~ll~~~~  102 (873)
                      .|.+|-+...+.--   +...++|.+|.|||..+.-++   ....|.++=-+|+++|...+..+.++.+.
T Consensus       151 eTGYGYIe~G~~~~---~~~~~~V~~FvEKPd~etA~~---yv~sG~y~WNSGmF~Fra~~~l~e~~~~~  214 (333)
T COG0836         151 ETGYGYIETGESIA---ENGVYKVDRFVEKPDLETAKK---YVESGEYLWNSGMFLFRASVFLEELKKHQ  214 (333)
T ss_pred             ccCcceeecCcccc---cCCceEeeeeeeCCCHHHHHH---HHHcCceEeeccceEEEHHHHHHHHHhhC
Confidence            35599998865421   112337999999999987543   46778899999999999999999888774

>PLN02357 serine acetyltransferase

Probab=80.83  E-value=3.5  Score=46.17  Aligned_cols=28  Identities=25%  Similarity=0.341  Sum_probs=12.5

Q ss_pred             ecCCceeCCCcEEEE---ceeCCCeEECCCc
Q 002861          212 IAHGVSIGEDSLIYD---SNISSGIQIGSLS  239 (873)
Q Consensus       212 l~~~v~v~~~s~Ve~---s~l~~~v~IG~~~  239 (873)
                      |.++++||+|..|.+   ++|++++.||++|
T Consensus       229 I~p~a~IG~Gv~Idh~~giVIGe~avIGdnV  259 (360)
T PLN02357        229 IHPGAKIGQGILLDHATGVVIGETAVVGNNV  259 (360)
T ss_pred             eCCCCEECCCeEECCCCceEECCCCEECCCC
Confidence            444444444444443   3344444444444

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=80.80  E-value=3.1  Score=44.71  Aligned_cols=14  Identities=29%  Similarity=0.152  Sum_probs=5.7

Q ss_pred             eecCCceeCCCcEE
Q 002861          211 KIAHGVSIGEDSLI  224 (873)
Q Consensus       211 vl~~~v~v~~~s~V  224 (873)
                      +|+.++.|+++++|
T Consensus        78 ~IG~~~~I~~~~~I   91 (254)
T TIGR01852        78 IIGDNNTIREFVTI   91 (254)
T ss_pred             EECCCCEECCCCEE
Confidence            34444444444444

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=80.48  E-value=2.4  Score=50.07  Aligned_cols=49  Identities=16%  Similarity=0.299  Sum_probs=28.9

Q ss_pred             ccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEe-CcCCC
Q 002861          198 VSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFP  247 (873)
Q Consensus       198 ~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis-g~~i~  247 (873)
                      ++.|..++.|.+|+|+.++.|+. +.+++|+|++++.||++|+|. ++.+.
T Consensus       295 ~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg  344 (482)
T PRK14352        295 DAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLG  344 (482)
T ss_pred             CCEECCCCEEecCEECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEc
Confidence            34454555566666666666653 556666666666666666664 44443

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=80.31  E-value=2.2  Score=30.81  Aligned_cols=30  Identities=17%  Similarity=0.297  Sum_probs=18.0

Q ss_pred             eeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          228 NISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       228 ~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      .|++++.||.+|.| ++.+..+          +.|.+|+.|
T Consensus         3 ~IG~~~~ig~~~~i-gi~igd~----------~~i~~g~~I   32 (34)
T PF14602_consen    3 TIGDNCFIGANSTI-GITIGDG----------VIIGAGVVI   32 (34)
T ss_dssp             EE-TTEEE-TT-EE-TSEE-TT----------EEE-TTEEE
T ss_pred             EECCCEEECccccc-CCEEcCC----------CEECCCCEE
Confidence            46778888888887 6666665          777777654

...

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=80.11  E-value=2.7  Score=45.13  Aligned_cols=34  Identities=15%  Similarity=0.024  Sum_probs=17.9

Q ss_pred             eeecCCceeCCCcEEE-------------EceeCCCeEECCCcEEeC
Q 002861          210 SKIAHGVSIGEDSLIY-------------DSNISSGIQIGSLSIVVG  243 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve-------------~s~l~~~v~IG~~~iisg  243 (873)
                      ++|+.+|.|+++++|.             +++|++++.||++|.|.+
T Consensus        48 v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~   94 (254)
T cd03351          48 TTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHR   94 (254)
T ss_pred             eEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEec
Confidence            4455555555555553             455555555555555543

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	873
3k85_A	357	Crystal Structure Of A D-Glycero-D-Manno-Heptose 1-		2e-11

>pdb|3K85|A Chain A, Crystal Structure Of A D-Glycero-D-Manno-Heptose 1-Phosphate Kinase From Bacteriodes Thetaiotaomicron Length = 357

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 123/296 (41%), Gaps = 20/296 (6%)
Query: 529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDA 588
           V+ + P+R+  AGG SD  P+S    G +LN  I+L +     TI ET      + + DA
Sbjct: 4   VRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYC---TIEETNSGRIEINAYDA 60
Query: 589 GNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGV----IHEKLIESMGLQIRTWANVPRG 644
                          +       +   A L+ GV    I +  +E    +I T+ + P G
Sbjct: 61  ----------QCCKSYLSXSQLEIDGEASLIKGVYNRIIRDYRLEPKSFKITTYNDAPAG 110
Query: 645 SGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL-MXXXXXXXXXXXXLYPGIK 703
           SGLGTSS     ++KA ++       +   +RL   +E+  +             + G  
Sbjct: 111 SGLGTSSTXVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFN 170
Query: 704 FTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLL 763
           +   F    L + V PL     ++ EL+   ++ FTG+ R +  ++ +      + +   
Sbjct: 171 YX-EFLQNDLVI-VNPLKXKRWIVDELESSXVLYFTGRSRSSAAIINEQKKNTSEGNQTA 228
Query: 764 ISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFA 819
           I +  ++ + A + + AL+  DV E  +I+ E W   ++     +N  +   F  A
Sbjct: 229 IEAXHKIKQSAIDTKLALLKGDVGEFARILGEGWENKKKXAGAITNPXIQEAFDVA 284

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	873
3k85_A	357	D-glycero-D-manno-heptose 1-phosphate kinase; bact	5e-67
3k17_A	365	LIN0012 protein; protein structure initiative II(P	1e-31
2pg9_A	337	Phosphomevalonate kinase; GHMP kinase superfamily,	8e-31
2x7i_A	308	Mevalonate kinase; transferase; HET: CIT; 2.20A {S	1e-29
2hfs_A	332	Mevalonate kinase, putative; GHMP kinase, trypanos	3e-23
2oi2_A	292	Mevalonate kinase; enzyme-inhibitor complex, trans	8e-23
1kkh_A	317	Mevalonate kinase; mixed beta sheet, phosphate-bin	4e-22
1kvk_A	395	MK, mevalonate kinase; RMK, ATP, GHMP, transferase	8e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1wuu_A	399	Galactokinase; galactosemia, GHMP superfamily, tra	5e-09
2cz9_A	350	Probable galactokinase; structural genomics, NPPSF	7e-07
1pie_A	419	Galactokinase; galactose, galactosemia, transferas	7e-07
2a2c_A	478	N-acetylgalactosamine kinase; galactokinase, , tra	2e-05

>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357

 Score =  226 bits (578), Expect = 5e-67
 Identities = 83/343 (24%), Positives = 152/343 (44%), Gaps = 17/343 (4%)

Query: 529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDA 588
           V+ + P+R+  AGG SD  P+S    G +LN  I+L +     TI ET      + + DA
Sbjct: 4   VRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYC---TIEETNSGRIEINAYDA 60

Query: 589 GNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLG 648
                   ++ +    + +    L+K       +I +  +E    +I T+ + P GSGLG
Sbjct: 61  QCCKSYLSMSQL----EIDGEASLIKGVYNR--IIRDYRLEPKSFKITTYNDAPAGSGLG 114

Query: 649 TSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LMGTGGGWQDQIGGLYPGIKFTSS 707
           TSS +   ++KA ++       +   +RL   +E+  +G  GG QDQ    + G  +   
Sbjct: 115 TSSTMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEF 174

Query: 708 FPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSI 767
                  + V PL     ++ EL+  +++ FTG+ R +  ++ +      + +   I ++
Sbjct: 175 LQN--DLVIVNPLKMKRWIVDELESSMVLYFTGRSRSSAAIINEQKKNTSEGNQTAIEAM 232

Query: 768 KRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFA-DPYCCGY 826
            ++ + A + + AL+  DV E  +I+ E W   +++    +N  +   F  A        
Sbjct: 233 HKIKQSAIDTKLALLKGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATGAGAMAG 292

Query: 827 KLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNSEVYNWNI 869
           K+ GAGGGGF + + +      E+ R L      N  V  +  
Sbjct: 293 KVSGAGGGGFIMFVVEP-TRKEEVVRALNN---LNGFVMPFQF 331

>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365

 Score =  126 bits (317), Expect = 1e-31
 Identities = 57/350 (16%), Positives = 118/350 (33%), Gaps = 33/350 (9%)

Query: 527 RTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISD 586
             ++V++P ++  AG ++      +E     +  A++   +L +            L   
Sbjct: 5   NKLQVKIPGKLYVAGEYAV-----VESGHTAILTAVNRYITLTL-----EDSERNELWIP 54

Query: 587 DAGNQLHIEDLTPIATPFDHNDPFRLVKSAL-LVTGVIHEKLIESMGLQIRTWANVP--- 642
              N +       +       + +     A+ + T  +  + IE   +++     +    
Sbjct: 55  HYENPVSWPIGGELK---PDGEHWTFTAEAINIATTFLKSEGIELTPVKMVIETELIDQS 111

Query: 643 -RGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPG 701
               GLG+S+    AV+ AL+     + S     +L  L   ++   G   D    +Y G
Sbjct: 112 GAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQGNGSCGDIASCMYGG 171

Query: 702 IKFTSSFPGIPLRLQVIPLLASPQL-----------ILELQQRLLVVFTGQVRLAHQVLQ 750
               ++F    ++ ++        +           + E      V +TG      +++ 
Sbjct: 172 WIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVPTFSVGWTGTPVSTGKLVS 231

Query: 751 KVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHC--- 807
           ++     +        + R  E+ K    A    D + L   + E  R+ QEL       
Sbjct: 232 QIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVN 291

Query: 808 -SNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESATELRRMLEK 856
                +  L   A+      K  G+GGG   +  +K  E A +L    EK
Sbjct: 292 IETSLLKELADSAENMGGAGKSSGSGGGDCGIAFSKTKELAEKLVNEWEK 341

>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308

 Score =  119 bits (299), Expect = 1e-29
 Identities = 60/291 (20%), Positives = 106/291 (36%), Gaps = 25/291 (8%)

Query: 574 IETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGL 633
               K+  ++ + ++GN   I+        +D  D  + + +  +      E    +  L
Sbjct: 34  FNAGKIKVLIEALESGNYSSIKSDVYDGMLYDAPDHLKSLVNRFV------ELNNITEPL 87

Query: 634 QIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM-GTGGGWQ 692
            +    N+P   GLG+S+ +A A V+A         + E +       EQ+  G   G  
Sbjct: 88  AVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSGID 147

Query: 693 DQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKV 752
            Q       + F                       L L   ++V+ TG      Q +  V
Sbjct: 148 TQTIVSGKPVWFQKGHAETL-------------KTLSLDGYMVVIDTGVKGSTRQAVHDV 194

Query: 753 VTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFV 812
               L  D   +S +K + +L     D + +   + L  I  E     + L    S++ +
Sbjct: 195 --HKLCEDPQYMSHVKHIGKLVLRASDVIEHHKFEALADIFNECHADLKALT--VSHDKI 250

Query: 813 DRLFAFADPYCC-GYKLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNS 862
           ++L            KL GAG GG  LLLAKD  +A  + + +EK    ++
Sbjct: 251 EQLMKIGKENGAIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEKAGAAHT 301

>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332

 Score =  100 bits (252), Expect = 3e-23
 Identities = 59/277 (21%), Positives = 105/277 (37%), Gaps = 16/277 (5%)

Query: 582 VLISDDAGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANV 641
           + I+      L ++D  P    +        +K+  LV   +   L    GL++     +
Sbjct: 49  LEINPGVPG-LQVDDQRPAIPGYIAQKRDEQIKAHQLVLDHLKVDLSGD-GLKMFIGGPL 106

Query: 642 PRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM-GTGGGWQDQIGGLYP 700
              SG+G S+    A  +AL ++   + ++E V     + E    GT  G  D     Y 
Sbjct: 107 VPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSG-ADNTAATYG 165

Query: 701 GIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRD 760
           G+     +     +    P+    +L       L+VV TG      +V+  V     Q+ 
Sbjct: 166 GLIL---YRRQNGKSVFKPIAFQQRL------YLVVVGTGINASTAKVVNDVHKMKQQQP 216

Query: 761 NLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFAD 820
                     T +    R+AL   D+  LG++M     L +++D   S   ++ +     
Sbjct: 217 VQFKRLYDNYTHIVSQAREALQKGDLQRLGQLMNANHDLCRQID--VSCRELESIVQTCR 274

Query: 821 PY-CCGYKLVGAGGGGFALLLAKDAESATELRRMLEK 856
            Y   G KL G G GG A+ LA  ++    + + L+ 
Sbjct: 275 TYGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKA 311

>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292

 Score = 98.6 bits (246), Expect = 8e-23
 Identities = 55/269 (20%), Positives = 103/269 (38%), Gaps = 26/269 (9%)

Query: 594 IEDLTPIATPFDHNDPFRLVKSALL---VTGVIHEKLIESMGLQIRTWANVPRGSGLGTS 650
           + ++           P+RL +   L   V   +    I    ++    + +P   G+G+S
Sbjct: 33  LLEVEVTCKVVPAESPWRLYEEDTLSMAVYASLEYLNITEACIRCEIDSAIPEKRGMGSS 92

Query: 651 SILAAAVVKALLQITDGDQSNENVARLVLLLEQLM-GTGGGWQDQIGGLYPGIKFTSSFP 709
           + ++ A ++A+      D  ++ +  LV   E +      G   +       I+F  +  
Sbjct: 93  AAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAHMNPSGLDAKTCLSDQPIRFIKN-- 150

Query: 710 GIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKR 769
                      +   +L ++L   L++  TG      + +Q V  +   +D L    +  
Sbjct: 151 -----------VGFTELEMDLSAYLVIADTGVYGHTREAIQVV--QNKGKDALPF--LHA 195

Query: 770 LTELAKNGRDALMNCDVDELGKIMLEAWRLHQEL-DPHCSNEFVDRLFAFA-DPYCCGYK 827
           L EL +    A+   D + LG+I+ +A   H  L +   S+   D L   A      G K
Sbjct: 196 LGELTQQAEIAISQKDAEGLGQILSQA---HLHLKEIGVSSLEADSLVETALSHGALGAK 252

Query: 828 LVGAGGGGFALLLAKDAESATELRRMLEK 856
           + G G GG  + L  +   A EL   LE+
Sbjct: 253 MSGGGLGGCIIALVTNLTHAQELAERLEE 281

>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317

 Score = 97.3 bits (243), Expect = 4e-22
 Identities = 60/314 (19%), Positives = 137/314 (43%), Gaps = 28/314 (8%)

Query: 557 VLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDPFRLVKSA 616
            +++AI L S++    I ET +   +L  +D    L +          ++   F+    A
Sbjct: 28  AISMAIDLTSTI---EIKETQEDEIILNLNDLNKSLGLNLNEIKNINPNNFGDFKYCLCA 84

Query: 617 LLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVAR 676
           +  T + +  +    G +I   + +P   GLG+S+ +    +KA+    + +  ++ +A+
Sbjct: 85  IKNT-LDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAK 143

Query: 677 LVLLLEQLM-GTGGGWQDQIGGLYPGIKFTSSFPGIPL--RLQVIPLLASPQLILELQQR 733
           L  ++E+ + G      D           T ++ GI      +   +    +  L+  + 
Sbjct: 144 LGYMVEKEIQGKASI-TDT---------STITYKGILEIKNNKFRKIKGEFEEFLKNCKF 193

Query: 734 LLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIM 793
           L+V    + +   +++ +V    ++  + +   I ++ +      +AL   + ++ GK+M
Sbjct: 194 LIVYAEKRKKKTAELVNEV--AKIENKDEIFKEIDKVID------EALKIKNKEDFGKLM 245

Query: 794 LEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESATELRRM 853
            +   L ++L+   S   +DR+    + +  G KL GAGGGG  ++L  + +    L+ +
Sbjct: 246 TKNHELLKKLN--ISTPKLDRIVDIGNRFGFGAKLTGAGGGGCVIILVNEEKEKELLKEL 303

Query: 854 LEKD-SNFNSEVYN 866
            ++D   FN  + N
Sbjct: 304 NKEDVRIFNCRMMN 317

>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Length = 395

 Score = 76.4 bits (187), Expect = 8e-15
 Identities = 47/278 (16%), Positives = 96/278 (34%), Gaps = 40/278 (14%)

Query: 603 PFDHNDPFRLVKSALL-VTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKAL 661
           P D      L   A L +   I  K      L I  W+ +P G+GLG+S+  +  V  AL
Sbjct: 98  PRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAAL 157

Query: 662 LQ---------------ITDGDQSNENVARLVLLLEQLM-GTGGGWQDQIGGLYPGIKFT 705
           L                 +  ++  +++ +     E+++ G   G  + +      +++ 
Sbjct: 158 LTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRY- 216

Query: 706 SSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLIS 765
                   + ++  L   P L      ++L+  T   R    ++  V +R ++   ++  
Sbjct: 217 -------QQGKMSSLKRLPAL------QILLTNTKVPRSTKALVAGVRSRLIKFPEIMAP 263

Query: 766 SIKRLTELAKNGRDALMNC-------DVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAF 818
            +  +  ++      L              L ++M         L     +  +D+L   
Sbjct: 264 LLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNALG--VGHASLDQLCQV 321

Query: 819 ADPYCCGYKLVGAGGGGFALLLAKDAESATELRRMLEK 856
              +    KL GAGGGG  + L K      ++    + 
Sbjct: 322 TAAHGLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQA 359

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 4e-10
 Identities = 87/660 (13%), Positives = 183/660 (27%), Gaps = 234/660 (35%)

Query: 56  VDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSG 115
           +D ++   +                L  T                          LL   
Sbjct: 51  IDHIIMSKDAVSGT---------LRLFWT--------------------------LLSKQ 75

Query: 116 KEMSLYEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFSYCAYEL-----LFL-HFGT 169
           +EM   +  V   +   + +LM  P+  E        RM+      L     +F  +  +
Sbjct: 76  EEM--VQKFVEEVLRINYKFLM-SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132

Query: 170 SSEVLDHLSGDVSGLVGRRHLCSI-PATTV----------SDIAASAVVLSSKI------ 212
             +    L         R+ L  + PA  V          + +A   V LS K+      
Sbjct: 133 RLQPYLKL---------RQALLELRPAKNVLIDGVLGSGKTWVALD-VCLSYKVQCKMDF 182

Query: 213 -AHGVSIGE----DSLIYDSNISSGIQIGSLSIVVGTNFPEEAGST---------AEDSF 258
               +++      ++++          +  L   +  N+   +  +          +   
Sbjct: 183 KIFWLNLKNCNSPETVL--------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 259 RFMLPDR---HCL-----------WEVPLVGCTERVLV---YCGLHD------------- 288
           R +L  +   +CL           W    + C  ++L+   +  + D             
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLD 292

Query: 289 NPKNSLTKDGT--FCGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLT 346
           +   +LT D       K +      L  +  DL      +E         P         
Sbjct: 293 HHSMTLTPDEVKSLLLK-Y------LDCRPQDL-----PREVL----TTNP-------RR 329

Query: 347 LATWLMG--LSDHKTGFLLPLWKNSRRVSLEELHRSIDFSEMCTGSSNHQA---DLAAGI 401
           L+  ++   + D         W N + V+ ++L   I+ S      + ++     L+  +
Sbjct: 330 LS--IIAESIRDGLA-----TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--V 380

Query: 402 ----AKACINYGMLGRNLSQLCEEILQKELSGVDICKDILDLCPR--LQDQNSKILPKSR 455
               A   I   +L          ++  ++   D    +++   +  L ++  K      
Sbjct: 381 FPPSAH--IPTILL---------SLIWFDVIKSD-VMVVVNKLHKYSLVEKQPK-ESTIS 427

Query: 456 AYQAQVDLLRACKEETTASELEHKVWAAVADETASAI-KYGF-REYLLEPLSRGSSAYQN 513
                ++L    + E       H+          S +  Y   + +  + L         
Sbjct: 428 IPSIYLELKVKLENEYAL----HR----------SIVDHYNIPKTFDSDDLIP------- 466

Query: 514 KNDDG-----FVDHPFQPR-TVKVELPVRI--DFAGGW------SDTPPWSLERAGCVLN 559
              D         H        ++ L   +  DF   +       D+  W+   +G +LN
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF--RFLEQKIRHDSTAWN--ASGSILN 522

Query: 560 VAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDPF-RLVKSALL 618
               L+   P   I +       L++        I D  P          +  L++ AL+
Sbjct: 523 TLQQLKFYKPY--ICDNDPKYERLVNA-------ILDFLPKIEENLICSKYTDLLRIALM 573

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 1e-09
 Identities = 86/579 (14%), Positives = 156/579 (26%), Gaps = 169/579 (29%)

Query: 392 NHQADLAAGIAKACINYGMLGRNLSQLCEEILQKELSGVDICKDILDLCPR--LQDQNSK 449
           +H  D   G  +    Y    +++  + E+           CKD+ D+ P+  L  +   
Sbjct: 4   HHHMDFETGEHQYQ--Y----KDILSVFEDAFVDNFD----CKDVQDM-PKSILSKEEID 52

Query: 450 ILPKSRAYQAQVDLLRACKEETTASELEHKVWAAVADETASAIKYGFREYLLEPL----- 504
            +  S+   +    L           ++  V      E    I Y F   L+ P+     
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV------EEVLRINYKF---LMSPIKTEQR 103

Query: 505 --SRGSSAYQNKNDDGFVD-HPFQPRTVKVELPVRIDFAGGWSDTPPWSLERA------- 554
             S  +  Y  + D  + D   F    V      R+         P   L +A       
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVS-----RLQ--------PYLKLRQALLELRPA 150

Query: 555 ---------GC-----VLNVA--ISLESSLPIG----TIIETTKMSGVL---------IS 585
                    G       L+V     ++  +        +        VL         I 
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 586 DDAGNQLHIEDLTPIATPFDHNDPFRLVKS-----ALLV-TGVIHEKLIESMGLQIRTWA 639
            +  ++        +       +  RL+KS      LLV   V + K   +  L  +   
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-- 268

Query: 640 NVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLY 699
                  L T+      V   L   T    S ++   + L  +++          +   Y
Sbjct: 269 -------LLTTR--FKQVTDFLSAATTTHISLDHH-SMTLTPDEVKS--------LLLKY 310

Query: 700 PGIKFTSSFP-----GIPLRLQVIPLLASPQLIL-------------------------- 728
              +     P       P RL +I       L                            
Sbjct: 311 LDCRP-QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 729 ELQQRL--LVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDV 786
           E ++    L VF     +   +L  +    ++ D +++     + +L K     L+    
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-----VNKLHKYS---LVEKQP 421

Query: 787 DELGKIMLEAWRLHQELDPHCSNE------FVDRLFAFADPYCCGYKLVGAGGG------ 834
            E   I + +  ++ EL     NE       VD  +     +     +            
Sbjct: 422 KE-STISIPS--IYLELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 835 GFALLLAKDAESATELRRMLEKDSNF-----NSEVYNWN 868
           G  L   +  E  T  R +   D  F       +   WN
Sbjct: 478 GHHLKNIEHPERMTLFRMVF-LDFRFLEQKIRHDSTAWN 515

>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 71/352 (20%), Positives = 119/352 (33%), Gaps = 63/352 (17%)

Query: 555 GCVLNVAISLESSLPIGTIIETTKMSG---VLISDDAGNQLHIE---DLTPIATPFDHND 608
           G VL +A+ L       T++  +        L++   G          L       +   
Sbjct: 57  GLVLPMALEL------MTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGT 110

Query: 609 PFRLVKSALLVTGVIHE-KLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDG 667
           P    + A  V GVI         G      ++VP G GL +S+ L  A    L Q+   
Sbjct: 111 P----RWANYVKGVIQYYPAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPD 166

Query: 668 DQSNENVARLVLLLE-QLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQL 726
             +    A++    E    G   G  DQ   L              L   ++P L+ P+L
Sbjct: 167 SGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVP-LSDPKL 225

Query: 727 ILELQQRLLVVFTG---------------QVRLAHQVLQKVVTRYLQRDNLLISSIKRLT 771
                  +L+  +                Q     + L K   R +Q + L  ++   ++
Sbjct: 226 ------AVLITNSNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELE-AARDLVS 278

Query: 772 ELAK---------NGR-----DALMNCDVDELGKIMLEAWRLHQEL--DPHCSNEFVDRL 815
           +              R      AL   D    G++M+E+   H+ L  D   S   +D+L
Sbjct: 279 KEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVES---HRSLRDDYEVSCPELDQL 335

Query: 816 --FAFADPYCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNSEVY 865
              A A P   G ++ G G GG  + L + A +A    R +++     +  Y
Sbjct: 336 VEAALAVPGVYGSRMTGGGFGGCTVTLLE-ASAAPHAMRHIQEHYGGTATFY 386

>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350

 Score = 51.1 bits (123), Expect = 7e-07
 Identities = 73/335 (21%), Positives = 121/335 (36%), Gaps = 61/335 (18%)

Query: 555 GCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDPFRLVK 614
           G V+ +AI+L       T IE                L+ E        F  ND  +   
Sbjct: 22  GYVMPMAINL------YTKIE--------AEKHGEVILYSEHFGEERK-FSLNDLRKENS 66

Query: 615 SALLVTGVIH---EKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSN 671
               V G+     E   E  G++ R   N+P G+GL +S+     +++ L ++ +    +
Sbjct: 67  WIDYVKGIFWVLKESDYEVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDS 126

Query: 672 ENVARLVLLLE-QLMGTGGGWQDQIGGLYPGIKFTSSF--PGIPLRLQVIPLLASPQLIL 728
            +   L    E + +G   G  DQ         F   F   G  + L    L     +  
Sbjct: 127 LSKVLLAKKAENEFVGVPCGILDQ---------FAVVFGREGNVIFLDTHTLDYEY-IPF 176

Query: 729 ELQQRLLVVFTG---------------QVRLAHQVLQKVVTRYLQRDNLLISS---IKR- 769
                +LV +TG                   + ++L K  ++ ++   L        K  
Sbjct: 177 PKDVSILVFYTGVRRELASSEYAERKHIAEESLKILGKGSSKEVREGELSKLPPLHRKFF 236

Query: 770 ---LTELA--KNGRDALMNCDVDELGKIMLEAWRLHQEL--DPHCSNEFVDRLFAFA-DP 821
              + E A     RDAL   +V+E+GKI+  A   H +L  +   S + +D     A   
Sbjct: 237 GYIVRENARVLEVRDALKEGNVEEVGKILTTA---HWDLAKNYEVSCKELDFFVERALKL 293

Query: 822 YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEK 856
              G +L GAG GG A+ L    ++ T    +L +
Sbjct: 294 GAYGARLTGAGFGGSAIALVDKEDAETIGEEILRE 328

>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419

 Score = 51.7 bits (124), Expect = 7e-07
 Identities = 61/378 (16%), Positives = 119/378 (31%), Gaps = 75/378 (19%)

Query: 525 QPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSG--- 581
                    P RI+  G  +D         G V   +I++      GT            
Sbjct: 45  TKEVEYFFSPGRINLIGEHTD------YNGGYVFPASITI------GTTGLARLREDKKV 92

Query: 582 VLISDDAGNQLHIE-DLTPIATPFDHNDPFRLVKSALLVTGVIHE----KLIESMGLQIR 636
            L S++      IE DL  +               +  V G+I            G ++ 
Sbjct: 93  KLYSENFPKLGVIEFDLDEVEKKDGEL-------WSNYVKGMIVMLKGAGYEIDKGFELL 145

Query: 637 TWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLE-QLMGTGGGWQDQI 695
               +P  SGL +S+ L   V   L  + + +     + +L    E   +G   G  DQ 
Sbjct: 146 IKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQF 205

Query: 696 GGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTG--------------- 740
              +  +K         L+ +++P+             ++++ T                
Sbjct: 206 AIGFGEVKKAIELDCNTLKYEMVPVELRD-------YDIVIMNTNKPRALTESKYNERFA 258

Query: 741 QVRLAHQVLQKVVTRYLQRD---NLLISSIKRLTE--LAK--------NGR-----DALM 782
           + R A + +Q  +      +       ++   + +  L K        N R      A +
Sbjct: 259 ETREALKRMQTRLDIQSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFV 318

Query: 783 NCDVDELGKIMLEAWRLHQEL--DPHCSNEFVDRL--FAFADPYCCGYKLVGAGGGGFAL 838
             ++ + G+++  +   H  L  D   +   +D L   A       G ++ GAG GG A+
Sbjct: 319 AGNLTKFGELLNAS---HASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAI 375

Query: 839 LLAKDAESATELRRMLEK 856
            L      +   + + + 
Sbjct: 376 ALVAHDNVSAFRKAVGQV 393

>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 27/148 (18%), Positives = 43/148 (29%), Gaps = 20/148 (13%)

Query: 555 GCVLNVAISLESSLPIGTIIETTKMSG---VLISDDAGNQLHIEDLTPIATPFDHNDPFR 611
             VL +A+          +I    +      L + +            I           
Sbjct: 76  YSVLPMAV------EQDVLIAVEPVKTYALQLANTNPLYPDFSTSANNIQIDKTKPLWHN 129

Query: 612 LVKSALLVTGVI-----HEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITD 666
                      +     H  L    G+      N+P  SGL +SS L        L +  
Sbjct: 130 YFL------CGLKGIQEHFGLSNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLG 183

Query: 667 GDQSNENVARLVLLLEQLMGTGGGWQDQ 694
            + S   +A +    E+ +GT GG  DQ
Sbjct: 184 RNLSKVELAEICAKSERYIGTEGGGMDQ 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	873
3k85_A	357	D-glycero-D-manno-heptose 1-phosphate kinase; bact	100.0
3k17_A	365	LIN0012 protein; protein structure initiative II(P	100.0
2pg9_A	337	Phosphomevalonate kinase; GHMP kinase superfamily,	100.0
4hac_A	321	Mevalonate kinase; GHMP, ATP binding, phosphorylat	100.0
3v2u_C	520	Protein GAL3; rossmann fold, GHMP superfamily, tra	100.0
3gon_A	335	Phosphomevalonate kinase; GHMP kinase superfamily,	100.0
2a2c_A	478	N-acetylgalactosamine kinase; galactokinase, , tra	100.0
1pie_A	419	Galactokinase; galactose, galactosemia, transferas	100.0
1wuu_A	399	Galactokinase; galactosemia, GHMP superfamily, tra	100.0
1kvk_A	395	MK, mevalonate kinase; RMK, ATP, GHMP, transferase	100.0
2hfs_A	332	Mevalonate kinase, putative; GHMP kinase, trypanos	100.0
2cz9_A	350	Probable galactokinase; structural genomics, NPPSF	100.0
2x7i_A	308	Mevalonate kinase; transferase; HET: CIT; 2.20A {S	100.0
1kkh_A	317	Mevalonate kinase; mixed beta sheet, phosphate-bin	100.0
2oi2_A	292	Mevalonate kinase; enzyme-inhibitor complex, trans	100.0
1h72_C	296	HK, homoserine kinase; transferase, threonine bios	99.95
3hul_A	298	HSK, HK, homoserine kinase; structural genomics, p	99.94
3pyf_A	306	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.94
2gs8_A	317	Mevalonate pyrophosphate decarboxylase; streptococ	99.91
3qt5_A	332	Mevalonate diphosphate decarboxylase; GHMP kinase	99.91
2v8p_A	271	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.91
2ww4_A	283	4-diphosphocytidyl-2C-methyl-D-erythritol kinase;	99.9
1uek_A	275	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	99.89
1fi4_A	416	Mevalonate 5-diphosphate decarboxylase; mixed alph	99.85
2hke_A	380	Diphosphomevalonate decarboxylase, putative; meval	99.77
3lto_A	323	Mevalonate diphosphate decarboxylase; protein stru	99.69
3f0n_A	414	Mevalonate pyrophosphate decarboxylase; cholestero	99.59
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.39
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.29
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	98.85
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	98.4
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	98.33
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	98.28
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	98.22
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	98.19
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	98.11
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	96.46
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	96.33
3pnn_A	303	Conserved domain protein; structural genomics, PSI	96.03
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	95.94
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	95.93
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	95.68
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	95.59
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	95.55
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	95.46
3r3r_A	187	Ferripyochelin binding protein; structural genomic	95.33
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	95.31
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	95.3
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	95.29
2x65_A	336	Mannose-1-phosphate guanylyltransferase; nucleotid	95.18
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	95.04
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	94.93
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	94.93
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	94.86
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	94.84
3r3r_A	187	Ferripyochelin binding protein; structural genomic	94.84
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	94.76
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	94.76
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	94.59
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	94.4
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	94.28
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	94.25
2cu2_A	337	Putative mannose-1-phosphate guanylyl transferase;	94.03
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	93.7
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	93.65
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	93.62
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	93.58
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	93.54
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	93.48
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	93.41
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	93.33
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	93.31
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	93.28
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	93.26
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	93.1
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	92.98
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	92.97
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	92.96
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	92.96
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	92.93
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	92.87
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	92.66
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	92.38
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	92.37
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	92.37
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	92.08
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	91.98
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	91.85
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	91.85
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	91.82
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	91.82
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	91.74
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	91.68
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	91.62
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	91.52
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	91.29
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	91.08
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	90.96
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	90.86
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	90.67
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	90.46
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	90.17
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	90.15
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	90.07
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	90.07
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	89.84
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	89.43
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	88.95
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	88.88
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	88.87
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	88.73
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	88.59
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	88.59
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	88.47
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	88.44
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	88.26
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	88.19
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	88.01
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	87.9
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	87.72
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	87.7
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	87.69
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	87.58
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	87.38
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	87.36
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	87.14
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	87.14
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	87.12
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	87.07
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	86.9
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	86.65
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	86.59
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	86.35
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	86.24
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	86.07
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	85.74
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	85.74
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	85.14
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	85.12
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	85.11
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	84.83
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	84.75
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	84.21
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	83.95
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	83.79
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	83.75
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	83.69
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	81.6
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	81.19
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	80.18

>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=7.7e-47  Score=422.47  Aligned_cols=317  Identities=25%  Similarity=0.376  Sum_probs=237.8

Q ss_pred             eEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 002861          528 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN  607 (873)
Q Consensus       528 ~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~  607 (873)
                      .++++|||||+|+|||+||++|+..+||.||++||+++++    ++++++++..|++.+.........++.+   +....
T Consensus         3 mi~~~APgRvnL~GehtD~~~~~~~~gG~vl~~AId~~~~----v~i~~~~d~~i~i~s~~~~~~~~~~~~~---~~~~~   75 (357)
T 3k85_A            3 LVRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAY----CTIEETNSGRIEINAYDAQCCKSYLSMS---QLEID   75 (357)
T ss_dssp             CEEEEEEEEEEEECTTTTSTTHHHHTCEEEEEEEEEEEEE----EEEEECSSSEEEEEETTTTEEEEEECCS---SCCCC
T ss_pred             EEEEECceEEEEecCCccCcchhhcCCCEEEEEEEeCcEE----EEEEECCCCeEEEEECCCCceEEEeccc---ccccc
Confidence            3789999999999999999999999999999999999987    7888888888999876544222222222   12335


Q ss_pred             ChhHHHHHHHHHhhhhhhccc-cccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-Hc
Q 002861          608 DPFRLVKSALLVTGVIHEKLI-ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LM  685 (873)
Q Consensus       608 ~~~~~~kaal~~~~~~~~~~~-~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~-~~  685 (873)
                      +|.+|+++++..+..   ... ...||+|++.++||.|+|||||||+++|++.|++++++.++++++|+++|..+|+ +.
T Consensus        76 ~~~~~v~~~~~~l~~---~~~~~~~g~~i~i~~~iP~g~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~  152 (357)
T 3k85_A           76 GEASLIKGVYNRIIR---DYRLEPKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDL  152 (357)
T ss_dssp             SSSHHHHHHHHHHHH---HTTCCCCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTTT
T ss_pred             chHHHHHHHHHHHHH---hcCCCCCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHc
Confidence            789999999987752   222 2579999999999999999999999999999999999999999999999999998 57


Q ss_pred             CCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHH
Q 002861          686 GTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLIS  765 (873)
Q Consensus       686 g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~  765 (873)
                      |++||++||+++++||+..+.+.++.  ...++++++++.+...++..++|++|+.+++|+++++++++.+...+....+
T Consensus       153 G~~~G~~D~~a~~~Gg~~~~~~~~~~--~~~~~~l~~~~~~~~~l~~~lvi~~t~~~~~a~~~l~~~~~~~~~~~~~~~~  230 (357)
T 3k85_A          153 GLSGGKQDQYAAAFGGFNYMEFLQND--LVIVNPLKMKRWIVDELESSMVLYFTGRSRSSAAIINEQKKNTSEGNQTAIE  230 (357)
T ss_dssp             CCCCCSHHHHHHHHCSEEEEEEETTT--EEEEEEECCCHHHHHHHHHTEEEECC---------------------CCTTH
T ss_pred             cCCCcHHHHHHHHhCCceEEEEeCCC--ceeEEEEecChhhhhhcCceEEEEECCCcccHHHHHHHHHHHhhcCcHHHHH
Confidence            99999999999999999988765543  3467888887654333456899999999999999999876554332222345


Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCc
Q 002861          766 SIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDA  844 (873)
Q Consensus       766 ~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~  844 (873)
                      .++.+.+.+.++.+||.++|++.|+++|+++|++++++..++++|++++|++.+++ |++|+|+||||+|||+++|+++ 
T Consensus       231 ~~~~i~~~~~~~~~aL~~~d~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~~Ga~GaklsGaG~gG~vial~~~-  309 (357)
T 3k85_A          231 AMHKIKQSAIDTKLALLKGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATGAGAMAGKVSGAGGGGFIMFVVEP-  309 (357)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTC-----------CCSCTTTTSCCSEEEECCCC---CEEEECCH-
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCeEeEecccCCCCEEEEEecH-
Confidence            67777788889999999999999999999999999887335899999999999987 8999999999999999999985 


Q ss_pred             chHHHHHHHHHhc
Q 002861          845 ESATELRRMLEKD  857 (873)
Q Consensus       845 ~~a~~i~~~L~~~  857 (873)
                      +.++++.+.|++.
T Consensus       310 ~~~~~~~~~l~~~  322 (357)
T 3k85_A          310 TRKEEVVRALNNL  322 (357)
T ss_dssp             HHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHC
Confidence            6789999999875

>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}

Probab=100.00  E-value=8.5e-39  Score=358.11  Aligned_cols=309  Identities=18%  Similarity=0.163  Sum_probs=240.5

Q ss_pred             eEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 002861          528 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN  607 (873)
Q Consensus       528 ~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~  607 (873)
                      .++++|||||+|+|||+|+.     +||.||++||+++.+    +.++++++.  .+.+.........++++.  .....
T Consensus         6 ~i~~~APGrv~L~GEh~~~~-----~g~~~l~~Ai~~~~~----v~v~~~~~~--~i~s~~~~~~~~~~~~~~--~~~~~   72 (365)
T 3k17_A            6 KLQVKIPGKLYVAGEYAVVE-----SGHTAILTAVNRYIT----LTLEDSERN--ELWIPHYENPVSWPIGGE--LKPDG   72 (365)
T ss_dssp             CEEEEEEEEEEEECTTGGGS-----TTCEEEEEEEEEEEE----EEEEECSSC--EEECTTCSSCBCCCTTSC--CCCSC
T ss_pred             EEEEEecceEEEecccEEec-----CCCEEEEEEccCcEE----EEEEECCCc--EEEecCCCcceeeecccC--CCCCC
Confidence            48899999999999999992     289999999999987    788887665  455543321111111111  01122


Q ss_pred             ChhHHHHHHHHHhh-hhhhccccccCEEEEEeeccCC----CCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 002861          608 DPFRLVKSALLVTG-VIHEKLIESMGLQIRTWANVPR----GSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLE  682 (873)
Q Consensus       608 ~~~~~~kaal~~~~-~~~~~~~~~~G~~i~i~s~IP~----GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E  682 (873)
                      ++++|+++++..+. .+.+......||+|++.++||.    ++|||||||+++|++.|++++++.++++++|+++|..+|
T Consensus        73 ~~~~yv~~~i~~~~~~~~~~g~~~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E  152 (365)
T 3k17_A           73 EHWTFTAEAINIATTFLKSEGIELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSH  152 (365)
T ss_dssp             GGGHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            45599999987653 1111233457999999999996    569999999999999999999999999999999999999


Q ss_pred             HHcCCCChhhhhHhhcccCeeEEecCCCC---------cc---------eeEEEeecCChhhhhhcCcEEEEEEeCCcch
Q 002861          683 QLMGTGGGWQDQIGGLYPGIKFTSSFPGI---------PL---------RLQVIPLLASPQLILELQQRLLVVFTGQVRL  744 (873)
Q Consensus       683 ~~~g~~~G~~Dq~~~~~GG~~~~~~~~~~---------~~---------~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~  744 (873)
                      +.....+|.+||+++++||+.+++.++..         .+         ...++++++++      + +++|++|+.+++
T Consensus       153 ~~~~g~~~g~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~~------~-~lll~~t~~~~s  225 (365)
T 3k17_A          153 LVVQGNGSCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPV------P-TFSVGWTGTPVS  225 (365)
T ss_dssp             HHHHSSCCSHHHHHHHHCSEEEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCS------S-EEEEEECSCCCC
T ss_pred             HHhCCCCCcccHHHHhcCCEEEEecCCHHHhhhhcccchhhhhhccCCCCcceeeccCCc------c-cEEEEECCCccc
Confidence            95433566699999999999887632210         00         23567777653      5 899999999999


Q ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCC----CCChHHHHHHHHHHc
Q 002861          745 AHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDP----HCSNEFVDRLFAFAD  820 (873)
Q Consensus       745 t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~----~vs~p~l~~l~~~a~  820 (873)
                      |+++++.+.+.....++.....++++.+++.++.+||.++|++.|+++|+++|+.++.+..    .+++|++++|++.++
T Consensus       226 T~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~gd~~~lg~lm~~~~~~l~~l~v~~~~~is~p~ld~l~~~a~  305 (365)
T 3k17_A          226 TGKLVSQIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAE  305 (365)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhcCCcccCHHHHHHHHHHH
Confidence            9999987644333233334566777777889999999999999999999999999998752    349999999999998


Q ss_pred             c-CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhc
Q 002861          821 P-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD  857 (873)
Q Consensus       821 ~-ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~  857 (873)
                      + |+. +|+||||||||+++|+++++.++++.+.|++.
T Consensus       306 ~~Ga~-ak~sGAGgGg~vial~~~~~~~~~l~~~l~~~  342 (365)
T 3k17_A          306 NMGGA-GKSSGSGGGDCGIAFSKTKELAEKLVNEWEKL  342 (365)
T ss_dssp             HTTSE-EEECTTCSSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred             hcCCE-EEecCCCCCCEEEEEECCHHHHHHHHHHHHHC
Confidence            7 777 99999999999999999867789999999986

>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}

Probab=100.00  E-value=7.8e-37  Score=336.91  Aligned_cols=300  Identities=19%  Similarity=0.225  Sum_probs=235.5

Q ss_pred             CCCCCCeEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCC
Q 002861          522 HPFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIA  601 (873)
Q Consensus       522 ~~~~~~~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~  601 (873)
                      .|..++.++++|||||+|+|+|+|++      ||.+|++||+++++    +++++.++  +++.+...    ..   .+ 
T Consensus        15 ~~~~~~mi~~~APgkinL~GeH~~~~------Gg~~l~~aI~~~~~----v~v~~~~~--i~i~~~~~----~~---~~-   74 (321)
T 4hac_A           15 VPRGSHMVSCSAPGKIYLFGEHAVVY------GETAIACAVELRTR----VRAELNDS--ITIQSQIG----RT---GL-   74 (321)
T ss_dssp             CCCSCCCEEEEEEEEEEEECTTTGGG------TCCEEEEEEEEEEE----EEEEECSS--EEEEETTE----EE---SS-
T ss_pred             cCCCCCEEEEEeeEEEEEEccCEEEc------CCEEEEEEeccCEE----EEEEECCC--EEEEECCC----Cc---cc-
Confidence            35555679999999999999999996      99999999999987    77777543  77765431    01   11 


Q ss_pred             CCCCCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 002861          602 TPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLL  681 (873)
Q Consensus       602 ~p~~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~  681 (873)
                       +.+.++   +++.+...+.    ......|++|++.++||.|+|||||||+++|++.|++++++.++++++|+++|..+
T Consensus        75 -~~~~~~---~~~~~~~~l~----~~~~~~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l~~~~l~~~~l~~la~~~  146 (321)
T 4hac_A           75 -DFEKHP---YVSAVIEKMR----KSIPINGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEI  146 (321)
T ss_dssp             -CTTTSH---HHHHHHHHHT----TTSCCCCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             -ccchhH---HHHHHHHHHH----HhCCCCCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence             111223   4444444432    12245799999999999999999999999999999999999999999999999999


Q ss_pred             HHH-cCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcC
Q 002861          682 EQL-MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRD  760 (873)
Q Consensus       682 E~~-~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~  760 (873)
                      |+. .|. +|++||+++++||+.++  .++.       ++.+|       +++++|++|+.+++|+++++.+.......+
T Consensus       147 e~~~~g~-~~~~D~~~~~~Gg~~~~--~~~~-------~l~~p-------~~~~vlv~p~~~~sT~~~~~~~~~l~~~~~  209 (321)
T 4hac_A          147 EIKVQGA-ASPTDTYVSTFGGVVTI--PERR-------KLKTP-------DCGIVIGDTGVFSSTKELVANVRQLRESYP  209 (321)
T ss_dssp             HHHHHSC-CCSHHHHHHHHCSEEEE--TTCC-------EECCC-------CCEEEEEECCCCCCHHHHHHHHHHHHHHCH
T ss_pred             HHHhcCC-CcHHHHHHHHcCCeEEE--cCCc-------eeccC-------CCEEEEEECCCCccHHHHHHHHHHHHhcCH
Confidence            985 466 67799999999999887  2332       22222       468999999999999998876533222122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEE
Q 002861          761 NLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALL  839 (873)
Q Consensus       761 ~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~  839 (873)
                      ....+.+.++.+++.++.++|.++|++.|+++|+++|..++.+.  +++|+++++++.+++ |++|+||||||+|||+++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~~~~~~~~~~~--v~~p~l~~l~~~a~~~Ga~ga~~SGaG~GG~v~a  287 (321)
T 4hac_A          210 DLIEPLMTSIGKISRIGEQLVLSGDYASIGRLMNVNQGLLDALG--VNILELSQLIYSARAAGAFGAKITGAGGGGCMVA  287 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT--CCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHCCCCEEEECccCCCCEEEE
Confidence            22345566777778889999999999999999999988887774  889999999999987 899999999999999999


Q ss_pred             EeCCcchHHHHHHHHHhcCCCceEEEEEeeccC
Q 002861          840 LAKDAESATELRRMLEKDSNFNSEVYNWNIYLE  872 (873)
Q Consensus       840 l~~~~~~a~~i~~~L~~~~~~~v~v~~~~i~~~  872 (873)
                      |+ +++.++++.+.|++.+   .++|.++++.+
T Consensus       288 l~-~~~~a~~~~~~l~~~g---~~v~~~~~~~~  316 (321)
T 4hac_A          288 LT-APEKCNQVAEAVAGAG---GKVTITKPTEQ  316 (321)
T ss_dssp             EE-CSTTHHHHHHHHHHTT---CEEEEECBCSC
T ss_pred             Ec-CHHHHHHHHHHHHhCC---CeEEEEEECCC
Confidence            99 4578999999998763   57888777643

>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*

Probab=100.00  E-value=8.9e-37  Score=352.32  Aligned_cols=310  Identities=19%  Similarity=0.243  Sum_probs=229.8

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEe--cCCcEEEEeCCCC-ceeeecC--CC--CC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETT--KMSGVLISDDAGN-QLHIEDL--TP--IA  601 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~--~~~~i~i~~~~~~-~~~~~~l--~~--l~  601 (873)
                      ++++|||||+|+|||+||+      ||.|+++||+++++    +.++++  ++..|++.+.+.. ....+++  ++  +.
T Consensus        40 ~v~~APGRVnLiGEHtDyn------gG~VLp~AI~~~~~----vav~~~~~~d~~i~i~S~~~~~~~~~~~l~~~~~~~~  109 (520)
T 3v2u_C           40 FIARSPGRVNLIGEHIDYC------DFSVLPLAIDVDML----CAVKILDEKNPSITLTNADPKFAQRKFDLPLDGSYMA  109 (520)
T ss_dssp             EEEEEEEEEEEECTTCGGG------TCCBEEEEEEEEEE----EEEEECCCSSCEEEEEESSTTSCCEEEECCTTCCCCC
T ss_pred             EEEEcceeEEEeccCeeeC------CCEEEEEEeecceE----EEEEeccCCCCEEEEEECCCCCCceEEEeccCccccc
Confidence            7889999999999999996      99999999999987    778887  7788988875422 1122333  22  11


Q ss_pred             CCCCCCChhHHHHHHHHHh-hhhhhc------cccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHh---CCCCCH
Q 002861          602 TPFDHNDPFRLVKSALLVT-GVIHEK------LIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQIT---DGDQSN  671 (873)
Q Consensus       602 ~p~~~~~~~~~~kaal~~~-~~~~~~------~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~---g~~ls~  671 (873)
                      .......|.+|+++++..+ ..+...      .....||++.|.|+||.|+||  |||+.+|++.|++.++   +.++++
T Consensus       110 i~~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g~~~~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~  187 (520)
T 3v2u_C          110 IDPSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPLVGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISK  187 (520)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSCCCCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBH
T ss_pred             cCcccccHHHHHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCH
Confidence            1123357999999876432 111111      124579999999999999999  9999999999999999   778999


Q ss_pred             HHHHHHHHHHHHHcCCCChhhhhHhhcccC---eeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCC---cchH
Q 002861          672 ENVARLVLLLEQLMGTGGGWQDQIGGLYPG---IKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQ---VRLA  745 (873)
Q Consensus       672 ~eL~~la~~~E~~~g~~~G~~Dq~~~~~GG---~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~---tr~t  745 (873)
                      .+|+++++.+|+++|.+||+|||+++++|+   ..++++.+.    +.++++++|+-  ...+..|+|++|++   ++.+
T Consensus       188 ~~la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~l~id~~~~----l~~~~v~~p~~--~~~~~~~vI~ns~v~~~k~~l  261 (520)
T 3v2u_C          188 KDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALYVEFRPK----LKATPFKFPQL--KNHEISFVIANTLVKSNKFET  261 (520)
T ss_dssp             HHHHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBEEEEECSSS----CEEEEECCCCC--SSCEEEEEEEECCCCCCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCchhhHHHHHhCCCCeEEEEEcCCC----ceeEEeeCCCc--cCCCeEEEEEECCCccccccc
Confidence            999999999999889999999999999998   777776552    35667666530  00246899999998   3422


Q ss_pred             ---------------HHHHHH----------------------HHHH---------------------------------
Q 002861          746 ---------------HQVLQK----------------------VVTR---------------------------------  755 (873)
Q Consensus       746 ---------------~~~l~~----------------------v~~~---------------------------------  755 (873)
                                     ..+|++                      +...                                 
T Consensus       262 a~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~~~~~~~~~~~sLRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  341 (520)
T 3v2u_C          262 APTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEES  341 (520)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHTTBCCCCCCSCSSCTTCCHHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHhhCCcccccccccccccccHHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence                           122221                      1000                                 


Q ss_pred             Hhhc---------------C-H------------------HHHHHHHHHHH--HHHHHHHHHhcc-------CHHHHHHH
Q 002861          756 YLQR---------------D-N------------------LLISSIKRLTE--LAKNGRDALMNC-------DVDELGKI  792 (873)
Q Consensus       756 ~~~~---------------~-~------------------~~~~~~~~i~~--~~~~~~~AL~~g-------d~~~lg~l  792 (873)
                      +...               + +                  ...+..+-+.|  .+.++.++|+++       |++.||++
T Consensus       342 l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~~~~~~~~~~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~l  421 (520)
T 3v2u_C          342 FSRKKSGFTVHEASTALNCSREEFTRDYLTTFPVRFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRL  421 (520)
T ss_dssp             HTTCTTCBCHHHHHHHTTSCHHHHHHHHTSSSCEEESCBCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred             hhhccccccHHHHHHhhcCChhhhhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHH
Confidence            0000               0 0                  11222233322  356778899987       59999999


Q ss_pred             HHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeC--CcchHHHHHHHHHhc
Q 002861          793 MLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAK--DAESATELRRMLEKD  857 (873)
Q Consensus       793 m~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~--~~~~a~~i~~~L~~~  857 (873)
                      |+++|.++++++ ++++|++|.|++++++ |++|+||||||+|||+++|++  +++.++++.+.|++.
T Consensus       422 m~~sH~slr~~~-~vS~peld~lv~~a~~~Ga~GarlTGaG~GGc~iaLv~~~~~~~~~~~~~~l~~~  488 (520)
T 3v2u_C          422 MNESQASCDKLY-ECSCIETNQICSIALANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEK  488 (520)
T ss_dssp             HHHHHHHHHHTS-CCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEEEESTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCCcHHHHHHHHHHHhCCCCEEEEecCCCCceEEEEEcCCCHHHHHHHHHHHHHH
Confidence            999999999998 4999999999999987 899999999999999999993  347788888888654

>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A

Probab=100.00  E-value=1.7e-36  Score=335.59  Aligned_cols=307  Identities=17%  Similarity=0.192  Sum_probs=238.6

Q ss_pred             EEEEeceEEEeecccccC-CCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 002861          529 VKVELPVRIDFAGGWSDT-PPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN  607 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~-~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~  607 (873)
                      +.|+|||||.|+|||... +      |..+|.+||+++.+    ++++++++..|  .++....    .. ++    ..+
T Consensus         2 i~v~apGKviL~GEhaVv~~------G~~Ala~ai~~~~~----v~i~~~~~~~i--~~~~~~~----~~-~~----~~~   60 (335)
T 3gon_A            2 IAVKTCGKLYWAGEYAILEP------GQLALIKDIPIYMR----AEIAFSDSYRI--YSDMFDF----AV-DL----RPN   60 (335)
T ss_dssp             EEEEEEEEEEEECTTGGGST------TCEEEEEEEEEEEE----EEEEECSSCEE--EETTSSS----CB-CS----SCC
T ss_pred             EEEEECCEEEEEeeeeEEcC------CCcEEEEEecceEE----EEEEECCCCEE--EEeCCCc----cc-cc----CcC
Confidence            789999999999999654 3      78899999999987    78888766544  3332210    00 11    112


Q ss_pred             ChhHHHHHHHHHhh-hhhhccccccCEEEEEeeccCCC---CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 002861          608 DPFRLVKSALLVTG-VIHEKLIESMGLQIRTWANVPRG---SGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ  683 (873)
Q Consensus       608 ~~~~~~kaal~~~~-~~~~~~~~~~G~~i~i~s~IP~G---sGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~  683 (873)
                      .++++++.++..+. .+........|++++|.+++|.+   +|||||||+++|++.|++++++.++++++++++|..+|+
T Consensus        61 ~~~~~~~~~i~~~~~~l~~~~~~~~~~~i~I~s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~la~~~E~  140 (335)
T 3gon_A           61 PDYSLIQETIALMGDFLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLL  140 (335)
T ss_dssp             TTTHHHHHHHHHHHHHHHHTTCCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCcccCCCCcchHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHH
Confidence            34566766655432 12223345689999999999987   699999999999999999999999999999999999999


Q ss_pred             HcC-CCChhhhhHhhcccCeeEEecCCCCc-----------------ceeEEEeecCChhhhhhcCcEEEEEEeCCcchH
Q 002861          684 LMG-TGGGWQDQIGGLYPGIKFTSSFPGIP-----------------LRLQVIPLLASPQLILELQQRLLVVFTGQVRLA  745 (873)
Q Consensus       684 ~~g-~~~G~~Dq~~~~~GG~~~~~~~~~~~-----------------~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t  745 (873)
                      ..+ .+|| |||+++.+||..+++..+...                 ..+.++++..+.      ...+++++++..++|
T Consensus       141 ~~~g~~sg-~D~a~a~~Gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~t  213 (335)
T 3gon_A          141 KRGDNGSM-GDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTL------ECDFLVGWTKEVAVS  213 (335)
T ss_dssp             HTTCCSCS-HHHHHHHHTSCEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCS------CCEEEEEECCCCCCH
T ss_pred             HhcCCCCC-CCcceeecCCeEEEEeCCccccceeecccchhheecccccceeEEcCCcc------ccceEEeecCChhhH
Confidence            664 4555 899999999999887544311                 023455665543      568999999999999


Q ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHccCCce
Q 002861          746 HQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCG  825 (873)
Q Consensus       746 ~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~ga~G  825 (873)
                      ++++.++.+..   ..   ..+.++.+++.++.++|+++|++.||++|+++|+++++++..+++|++++|++.+++...|
T Consensus       214 ~~~v~~v~~~~---~~---~~~~~~~~~~~~~~~aL~~~d~~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~~g~~  287 (335)
T 3gon_A          214 SHMVQQIKQNI---NQ---NFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAV  287 (335)
T ss_dssp             HHHHHHHGGGC---CH---HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSEE
T ss_pred             HHHHHHHHHHh---HH---HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHhCCcE
Confidence            99988764332   22   2355666778899999999999999999999999999988668999999999999985558


Q ss_pred             EEecCCCccceeEEEeCCcchHHHHHHHHHhcCCCceEEEEEeecc
Q 002861          826 YKLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNSEVYNWNIYL  871 (873)
Q Consensus       826 ~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~~~~~v~v~~~~i~~  871 (873)
                      +|+||||||||+++|+++++.+++++++|++++ +.+ +|.-++.-
T Consensus       288 akltGAG~Ggc~ial~~~~~~~~~i~~~~~~~G-i~~-~y~~~~g~  331 (335)
T 3gon_A          288 AKSSGAGGGDCGIALSFDAQSTKTLKNRWADLG-IEL-LYQERIGH  331 (335)
T ss_dssp             EEECTTCSSSEEEEEECSHHHHHHHHHHHHHTT-CEE-EEEEEC--
T ss_pred             EEEccccchheEEEEECCHHHHHHHHHHHHHCC-CcE-EeehhhcC
Confidence            999999999999999998788999999999873 333 57766653

>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*

Probab=100.00  E-value=4.7e-36  Score=347.67  Aligned_cols=305  Identities=17%  Similarity=0.158  Sum_probs=229.9

Q ss_pred             eEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCC-ceeeecCCCCCCCCCC
Q 002861          528 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGN-QLHIEDLTPIATPFDH  606 (873)
Q Consensus       528 ~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~-~~~~~~l~~l~~p~~~  606 (873)
                      .++++||||++|+|||+|++      |+.||++||+++++    ++++++++..+++.+.... .....+++++......
T Consensus        55 ~~~~~APgrv~L~Geh~D~~------g~~vl~~AI~~~~~----v~v~~~~~~~i~i~~~~~~~~~~~~~~~~l~~~~~~  124 (478)
T 2a2c_A           55 KFYVRAPGRVNIIGEHIDYC------GYSVLPMAVEQDVL----IAVEPVKTYALQLANTNPLYPDFSTSANNIQIDKTK  124 (478)
T ss_dssp             SEEEEEEEEEEEECTTCGGG------TCCBEEEEEEEEEE----EEEEECSSSCEEEEESSTTSCCEEECCCCC--CCSS
T ss_pred             CEEEEeceEEEEeccceeeC------CCeEEEEEecccEE----EEEEECCCCeEEEEECCCCCcceeccchhcccCCCc
Confidence            38899999999999999997      88999999999987    7788877777888764321 1111122332211123


Q ss_pred             CChhHHHHHHHHHhh-hhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHc
Q 002861          607 NDPFRLVKSALLVTG-VIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM  685 (873)
Q Consensus       607 ~~~~~~~kaal~~~~-~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~  685 (873)
                      ..|.+++++++..+- .+. . ....|++|++.|+||.|+|||||||+++|++.|++.++|.++++++|+++|..+|++.
T Consensus       125 ~~~~n~v~~a~~~v~~~~~-~-~~~~g~~i~i~s~IP~g~GLgSSAA~~va~~~al~~~~~~~ls~~~l~~la~~~E~~~  202 (478)
T 2a2c_A          125 PLWHNYFLCGLKGIQEHFG-L-SNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYI  202 (478)
T ss_dssp             CCHHHHHHHHHHHHHHHTT-C-CSCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGG
T ss_pred             ccHHHHHHHHHHHHHHHHh-c-cCCCceEEEEECCCCCCCCchHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc
Confidence            468899876655431 111 1 0157999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCChhhhhHhhccc---CeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHH----------------
Q 002861          686 GTGGGWQDQIGGLYP---GIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAH----------------  746 (873)
Q Consensus       686 g~~~G~~Dq~~~~~G---G~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~----------------  746 (873)
                      |.++|++||+++++|   |+.++++.+     ..+.++++++      +..++|++|+.+++|.                
T Consensus       203 g~~~g~~D~~a~~~G~~g~~~~i~f~~-----~~~~~~~~~~------~~~~vi~~s~~~~~t~~t~~yn~r~~e~~~A~  271 (478)
T 2a2c_A          203 GTEGGGMDQSISFLAEEGTAKLIEFSP-----LRATDVKLPS------GAVFVIANSCVEMNKAATSHFNIRVMECRLAA  271 (478)
T ss_dssp             TCCCCSHHHHHHHHCBTTBEEEEETTT-----TEEEEECCCT------TEEEEEEECCCCCCGGGSSHHHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHhccCCcEEEEEcCC-----CceEEecCCC------CcEEEEEeCCCcccccccchhHHHHHHHHHHH
Confidence            999999999999997   788887654     2567777764      4689999999887432                


Q ss_pred             HHHHHH----------------------------HHHHhhc---C-HH-----------------------------HHH
Q 002861          747 QVLQKV----------------------------VTRYLQR---D-NL-----------------------------LIS  765 (873)
Q Consensus       747 ~~l~~v----------------------------~~~~~~~---~-~~-----------------------------~~~  765 (873)
                      ++|++.                            ++.+...   . .+                             ..+
T Consensus       272 ~~L~~~~~~~~~~~~~l~d~~~~~~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~r  351 (478)
T 2a2c_A          272 KLLAKYKSLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQDVLIFKLYQR  351 (478)
T ss_dssp             HHHHHHTTCCTTTCCCHHHHHHHHTCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGTTCCCBCHHHH
T ss_pred             HHHHhhhcccccccchHHhhhhhhcccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhccccccccchhHHHHHH
Confidence            233321                            0111110   0 00                             001


Q ss_pred             HHHHH--HHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEE
Q 002861          766 SIKRL--TELAKNGRDALMN---CDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALL  839 (873)
Q Consensus       766 ~~~~i--~~~~~~~~~AL~~---gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~  839 (873)
                      ..+-+  ...+.+++++|.+   +|++.||++|+++|++++.++ ++++|++++|++++++ |++|+||||||||||+++
T Consensus       352 a~h~~~e~~rv~~~~~aL~~~~~~d~~~lg~lm~~sh~slr~l~-~vs~peld~l~~~a~~~Ga~GarltGAG~GG~via  430 (478)
T 2a2c_A          352 AKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSHMSCRDMY-ECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVS  430 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTS-CCCCHHHHHHHHHHHHTTCSEEEECTTCSSSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHhCCCcEEEeccCCCccEEEE
Confidence            11111  1235677889998   999999999999999999998 4899999999999987 999999999999999999


Q ss_pred             EeCCcchHHHHHHHHHhc
Q 002861          840 LAKDAESATELRRMLEKD  857 (873)
Q Consensus       840 l~~~~~~a~~i~~~L~~~  857 (873)
                      |+++ +.++++.+.|++.
T Consensus       431 Lv~~-~~~~~~~~~l~~~  447 (478)
T 2a2c_A          431 MVPA-DKLPSFLANVHKA  447 (478)
T ss_dssp             EEEG-GGHHHHHHHHHHH
T ss_pred             EEcH-HHHHHHHHHHHHH
Confidence            9986 6677888777653

>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7

Probab=100.00  E-value=8.1e-36  Score=340.89  Aligned_cols=316  Identities=17%  Similarity=0.158  Sum_probs=234.8

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCC--ceeeecCCCCCCCCCC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGN--QLHIEDLTPIATPFDH  606 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~--~~~~~~l~~l~~p~~~  606 (873)
                      ++++|||||+|+|+|+|+.      ||.+|++||+++++    ++++++++..+.+.+....  ......++++. +...
T Consensus        49 ~~~~APgkv~L~Geh~d~~------G~~~l~~aI~l~~~----v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~  117 (419)
T 1pie_A           49 EYFFSPGRINLIGEHTDYN------GGYVFPASITIGTT----GLARLREDKKVKLYSENFPKLGVIEFDLDEVE-KKDG  117 (419)
T ss_dssp             EEEEEEEEEEEECCSCTTT------TCEEEEEEEEEEEE----EEEEECSSSEEEEEETTCGGGCCEEEETTCTT-SCCT
T ss_pred             EEEEeeEEEEEcccceeeC------CCEEEEEEEcccEE----EEEEECCCCEEEEEECCCCCcceeEEeccccc-CCCC
Confidence            7899999999999999985      88999999999987    7888877767777764321  11112233332 1122


Q ss_pred             CChhHHHHHHHHHhhhhhhcccc-ccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-
Q 002861          607 NDPFRLVKSALLVTGVIHEKLIE-SMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL-  684 (873)
Q Consensus       607 ~~~~~~~kaal~~~~~~~~~~~~-~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~-  684 (873)
                      .+|.+|+++++..+..   .... ..|++|++.++||.|+|||||||+++|++.|+++++|.++++++|+++|..+|+. 
T Consensus       118 ~~~~n~v~~~~~~l~~---~g~~~~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~  194 (419)
T 1pie_A          118 ELWSNYVKGMIVMLKG---AGYEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDY  194 (419)
T ss_dssp             TCTHHHHHHHHHHHHH---TTCCCCSCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHH---hCCCCCCCEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence            5688999988776531   1122 3799999999999999999999999999999999999999999999999999985 


Q ss_pred             cCCCChhhhhHhhcccC---eeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHH---------------
Q 002861          685 MGTGGGWQDQIGGLYPG---IKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAH---------------  746 (873)
Q Consensus       685 ~g~~~G~~Dq~~~~~GG---~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~---------------  746 (873)
                      .|.++|+|||+++++||   ..++++.+.     .+++++++.     .++.++|++|+.+++|.               
T Consensus       195 ~G~~~G~~D~~~~~~Gg~~~~~~~d~~~~-----~~~~l~~~~-----~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~  264 (419)
T 1pie_A          195 IGVNSGILDQFAIGFGEVKKAIELDCNTL-----KYEMVPVEL-----RDYDIVIMNTNKPRALTESKYNERFAETREAL  264 (419)
T ss_dssp             TCCCCCSHHHHHHHHCBTTEEEEEETTTC-----CEEEEECCC-----TTEEEEEEECCCCCCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCccchhHHHHHhccCCeEEEeecCCC-----ceEEeecCC-----CCcEEEEEECCCccccccchHHHHHHHHHHHH
Confidence            69999999999999998   444443322     346666541     14689999999988764               


Q ss_pred             HHHHHH--HHHHhhcCHH-------------H-HHHHHHHHH--HHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCC
Q 002861          747 QVLQKV--VTRYLQRDNL-------------L-ISSIKRLTE--LAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCS  808 (873)
Q Consensus       747 ~~l~~v--~~~~~~~~~~-------------~-~~~~~~i~~--~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs  808 (873)
                      +++++.  ++.+...++.             . .+..+.+.+  .+.++.++|.++|++.||++|+++|..+++.+ +++
T Consensus       265 ~~l~~~~~v~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~lm~~~~~~l~~~~-~~~  343 (419)
T 1pie_A          265 KRMQTRLDIQSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDY-EVT  343 (419)
T ss_dssp             HHHHHHCCCSSGGGCCHHHHHHTGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTS-CCC
T ss_pred             HHHhhccccCchhhCCHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCC
Confidence            122210  0000011110             1 111222222  26678899999999999999999999888855 489


Q ss_pred             hHHHHHHHHHHcc--CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhc----CCCceEEEEEeec
Q 002861          809 NEFVDRLFAFADP--YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD----SNFNSEVYNWNIY  870 (873)
Q Consensus       809 ~p~l~~l~~~a~~--ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~----~~~~v~v~~~~i~  870 (873)
                      +|+++++++.+++  |++|+||||||||||+++|+++ +.++++.+.|++.    .+....+|.+++.
T Consensus       344 ~p~l~~l~~~a~~~~Ga~ga~lsGaG~Gg~v~al~~~-~~a~~~~~~l~~~~~~~~g~~~~~~~~~~~  410 (419)
T 1pie_A          344 GLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAH-DNVSAFRKAVGQVYEEVVGYPASFYVAQIG  410 (419)
T ss_dssp             CHHHHHHHHHHHHSTTEEEEEECSSCSSSEEEEEEEG-GGHHHHHHHHHHHHHHHHSSCCEEEECCBC
T ss_pred             CHHHHHHHHHHHhcCCCceeeEecCCCCeEEEEEEch-hhHHHHHHHHHHHHHHhcCCCCeEEEEcCC
Confidence            9999999999985  8899999999999999999986 6677777777653    2455678877653

>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7

Probab=100.00  E-value=2.1e-35  Score=335.33  Aligned_cols=316  Identities=18%  Similarity=0.146  Sum_probs=235.2

Q ss_pred             eEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCce----eeecCCCCC--
Q 002861          528 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQL----HIEDLTPIA--  601 (873)
Q Consensus       528 ~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~----~~~~l~~l~--  601 (873)
                      .+.++|||||+|+|+|+||      |||.||++||+++++    ++++++++..+++.+......    ....++...  
T Consensus        36 ~~~~~APgkv~L~Geh~Dy------~~~~~l~~ai~~~~~----v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~  105 (399)
T 1wuu_A           36 ELAVSAPGRVNLIGEHTDY------NQGLVLPMALELMTV----LVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRS  105 (399)
T ss_dssp             SEEEEEEEEEEEECTTCGG------GTCEEEEEEEEEEEE----EEEEEETTCEEEEEECCSSSCSCSEEEEECCCSSCC
T ss_pred             CEEEEeeeeEEEecccccc------CCCEEEeEEecccEE----EEEEECCCCeEEEEECCCCCccccceEEecCccccc
Confidence            3889999999999999997      499999999999987    778887777788876432210    001121100  


Q ss_pred             CCCCCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 002861          602 TPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLL  681 (873)
Q Consensus       602 ~p~~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~  681 (873)
                      .+....+|.+|+++++..+ .    .....|++|++.|+||.|+|||||||+++|++.|+++++|.++++++|+++|..+
T Consensus       106 ~~~~~~~~~n~v~~a~~~l-~----~~~~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~~~~l~~~~l~~la~~~  180 (399)
T 1wuu_A          106 LEPGTPRWANYVKGVIQYY-P----AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQA  180 (399)
T ss_dssp             CCCCSSGGGHHHHHHHHHC-S----SSCCCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHh-c----CCCCCCeEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            1112345889999988765 1    1223689999999999999999999999999999999999999999999999999


Q ss_pred             HH-HcCCCChhhhhHhhcccCe---eEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHH-HH-------
Q 002861          682 EQ-LMGTGGGWQDQIGGLYPGI---KFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQ-VL-------  749 (873)
Q Consensus       682 E~-~~g~~~G~~Dq~~~~~GG~---~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~-~l-------  749 (873)
                      |+ +.|.++|+|||+++++||.   .++++.+.     .+++++++.     .++.++|++|+.+++|.. .+       
T Consensus       181 E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~-----~~~~~~~~~-----~~~~~vl~~~~~~~~t~~~~y~~r~~~~  250 (399)
T 1wuu_A          181 EHSFAGMPCGIMDQFISLMGQKGHALLIDCRSL-----ETSLVPLSD-----PKLAVLITNSNVRHSLASSEYPVRRRQC  250 (399)
T ss_dssp             HHHHTCCCCCSHHHHHHHHCCTTEEEEEETTTC-----CEEEEECCC-----SSEEEEEEEEEEEC--CTTTHHHHHHHH
T ss_pred             HHHhcCCCCccHHHHHHHhccCCeEEEEecCCC-----ceEEecCCC-----CCeEEEEEECCCccccccccHHHHHHHH
Confidence            98 5799999999999999994   44443322     345665542     257899999999888742 11       


Q ss_pred             HHHHHHHh-----hc------------CHH-HHHHHHHHHHH--HHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCCh
Q 002861          750 QKVVTRYL-----QR------------DNL-LISSIKRLTEL--AKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSN  809 (873)
Q Consensus       750 ~~v~~~~~-----~~------------~~~-~~~~~~~i~~~--~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~  809 (873)
                      ....+.+.     ..            ++. ..+..+.+.+.  +.++.++|.++|++.||++|+++|..+++.. ++++
T Consensus       251 ~~a~~~l~~~~l~~~~~~~~~~~~~~l~~~~~~r~~~~~~e~~r~~~~~~al~~~d~~~lg~~m~~~h~~l~~~~-~~~~  329 (399)
T 1wuu_A          251 EEVARALGKESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDY-EVSC  329 (399)
T ss_dssp             HHHHHHTTCSSTTSCCHHHHTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTS-CCCC
T ss_pred             HHHHHHhChhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh-cCCC
Confidence            11111110     00            111 11223333333  6678899999999999999999988877644 4889


Q ss_pred             HHHHHHHHHHcc--CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhcCCCceEEEEEeec
Q 002861          810 EFVDRLFAFADP--YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNSEVYNWNIY  870 (873)
Q Consensus       810 p~l~~l~~~a~~--ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~~~~~v~v~~~~i~  870 (873)
                      |+++++++.+++  |++|+|+||||+|||+++|+++ +.++++.+.|++..+....+|.++++
T Consensus       330 p~l~~l~~~a~~~~Ga~ga~~sGaG~Gg~v~~l~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~  391 (399)
T 1wuu_A          330 PELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEA-SAAPHAMRHIQEHYGGTATFYLSQAA  391 (399)
T ss_dssp             HHHHHHHHHHHTSTTEEEEEECSSCSEEEEEEEEEG-GGHHHHHHHHHHHCSSCCEEEEECCC
T ss_pred             HHHHHHHHHHHhcCCceEEeeecCCCccEEEEEEcc-chHHHHHHHHHHHhCCCCcEEEEcCC
Confidence            999999999986  7899999999999999999986 67889999998876666778877654

>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A

Probab=100.00  E-value=2.9e-35  Score=333.85  Aligned_cols=313  Identities=18%  Similarity=0.217  Sum_probs=225.8

Q ss_pred             eEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCC------
Q 002861          528 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIA------  601 (873)
Q Consensus       528 ~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~------  601 (873)
                      .+.++|||||+|+|||+||.      ||.|+++||+++++    +.++++++..+++.+.+.......+++++.      
T Consensus         5 ~~~~~APgrv~L~Geh~d~~------g~~~l~~ai~~~~~----v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~   74 (395)
T 1kvk_A            5 VLLVSAPGKVILHGEHAVVH------GKVALAVALNLRTF----LVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDTGF   74 (395)
T ss_dssp             CEEEEEEEEEEEECTTGGGG------TCCEEEEEEEEEEE----EEEEECSSSEEEEEETTTTEEEEEEHHHHHTSCC--
T ss_pred             cEEEEeCeEEEEecCCeeeE------CCEeeeeEeeccEE----EEEEECCCCeEEEEcCCCCceEEEEhHhhhhhhccc
Confidence            48899999999999999985      99999999999987    788888777888775433211111111110      


Q ss_pred             -CCC-----------------CCCChhHH-----HHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHH
Q 002861          602 -TPF-----------------DHNDPFRL-----VKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVV  658 (873)
Q Consensus       602 -~p~-----------------~~~~~~~~-----~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l  658 (873)
                       .+.                 ...+|.+|     +++++..+...........|++|++.++||.|+|||||||+++|++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~  154 (395)
T 1kvk_A           75 LEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVA  154 (395)
T ss_dssp             --------------CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSCTTSSSCHHHHHHHHHH
T ss_pred             ccccccccccHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHhccccCCCCEEEEEEecCCCCCCccHHHHHHHHHH
Confidence             000                 01145555     3444332211000001146999999999999999999999999999


Q ss_pred             HHHHHHhCC-----CCC-------H---HHHHHHHHHHHH-HcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecC
Q 002861          659 KALLQITDG-----DQS-------N---ENVARLVLLLEQ-LMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLA  722 (873)
Q Consensus       659 ~Al~~~~g~-----~ls-------~---~eL~~la~~~E~-~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~  722 (873)
                      .|++++++.     +++       +   .+|+++|..+|+ +.|.++|+ ||+++++||+.+++  ++     .++|++.
T Consensus       155 ~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~-D~~~~~~Gg~~~~~--~~-----~~~~l~~  226 (395)
T 1kvk_A          155 AALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGV-DNSVSTWGGALRYQ--QG-----KMSSLKR  226 (395)
T ss_dssp             HHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSH-HHHHHHHCSEEEES--SS-----CEEECSC
T ss_pred             HHHHHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCc-chHHhhhcceEEEc--CC-----CceeccC
Confidence            999999999     788       7   556677899998 56999999 99999999998863  33     3467764


Q ss_pred             ChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH-------hccCHHHHHHHHHH
Q 002861          723 SPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDAL-------MNCDVDELGKIMLE  795 (873)
Q Consensus       723 ~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL-------~~gd~~~lg~lm~~  795 (873)
                      ++      +.+++|++|+.+++|+++++.+.+.....+..+...++++.+++.++..++       .++|++.|+++|++
T Consensus       227 ~~------~~~~vl~~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~al~~~d~~~lg~lm~~  300 (395)
T 1kvk_A          227 LP------ALQILLTNTKVPRSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDM  300 (395)
T ss_dssp             CC------CEEEEEEECCCCCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             CC------CcEEEEEECCCCCchHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHH
Confidence            43      568999999999999998776543321121212224455555555555544       45899999999999


Q ss_pred             HHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcc---hHHHHHHHHHhcCCCceEEEEEeec
Q 002861          796 AWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE---SATELRRMLEKDSNFNSEVYNWNIY  870 (873)
Q Consensus       796 ~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~---~a~~i~~~L~~~~~~~v~v~~~~i~  870 (873)
                      +|..++++  ++++|+++++++.+++ |+ |+||||||||||+++|+++..   .++++.+.+++.   ...+|.+++.
T Consensus       301 ~~~~l~~~--~~~~p~l~~l~~~a~~~Ga-ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~  373 (395)
T 1kvk_A          301 NQHHLNAL--GVGHASLDQLCQVTAAHGL-HSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGC---GFDCWETSIG  373 (395)
T ss_dssp             HHHHHHHH--TCCCHHHHHHHHHHHHTTC-EEEECSSCSSSEEEEEECTTCCHHHHHHHHHHHHHT---TCEEEEEEES
T ss_pred             HHHHHHHc--CCCCHHHHHHHHHHHHcCC-ceeeccCCCCCEEEEEecCCCCHHHHHHHHHHHHHc---CCEEEEEecC
Confidence            99988875  4899999999999987 78 999999999999999998632   345666777664   2346776654

>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*

Probab=100.00  E-value=4.4e-34  Score=316.50  Aligned_cols=308  Identities=20%  Similarity=0.211  Sum_probs=229.6

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEec-CCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTK-MSGVLISDDAGNQLHIEDLTPIATPFDHN  607 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~-~~~i~i~~~~~~~~~~~~l~~l~~p~~~~  607 (873)
                      ++++|||||+|+|+|.|+.      ||.++++||+++.+    +++++.+ +..+.+.+...         .+  |....
T Consensus        14 ~~~~ApgKi~L~Geh~~~~------G~~~l~~ai~~~~~----v~v~~~~~~~~~~~~~~~~---------~~--~~~~~   72 (332)
T 2hfs_A           14 GKNIGYGKVILFGEHFVVH------GAEAIVAGISEYTE----CRLEINPGVPGLQVDDQRP---------AI--PGYIA   72 (332)
T ss_dssp             SCCEEEEEEEEECTTGGGG------TCCEEEEEEEEEEE----EEEEEETTCCSEEEEECCC---------CC--TTHHH
T ss_pred             EEEEEeEEEEEecCCEEEc------CCeEEEEEecccEE----EEEEEcCCCCCeEEEecCc---------cc--ccccc
Confidence            6789999999999999985      99999999999987    6777763 34455432210         11  10000


Q ss_pred             ChhHH-HHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-c
Q 002861          608 DPFRL-VKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL-M  685 (873)
Q Consensus       608 ~~~~~-~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~-~  685 (873)
                      +..+. .+++...+.... ......|++|++.++||.|+|||||||+++|++.|++++++.++++++|+++|..+|+. .
T Consensus        73 ~~~~~~~~a~~~~~~~~g-~~~~~~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~  151 (332)
T 2hfs_A           73 QKRDEQIKAHQLVLDHLK-VDLSGDGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGGYH  151 (332)
T ss_dssp             HHHHHHHHHHHHHHHHTT-BCCSSSEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHGGGSS
T ss_pred             ccchhHHHHHHHHHHHcC-CccCCCceEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhc
Confidence            11222 233222221100 00012689999999999999999999999999999999999999999999999999985 5


Q ss_pred             CCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHH
Q 002861          686 GTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLIS  765 (873)
Q Consensus       686 g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~  765 (873)
                      |.++|. |++++++||+..+....+.   ..++++++++      +++++|++|+.+++|+++++++.......++.+..
T Consensus       152 G~~~G~-D~~~~~~Gg~~~~~~~~g~---~~~~~~~~~~------~~~~vl~~~~~~~~T~~~~~~~~~~~~~~~~~~~~  221 (332)
T 2hfs_A          152 GTPSGA-DNTAATYGGLILYRRQNGK---SVFKPIAFQQ------RLYLVVVGTGINASTAKVVNDVHKMKQQQPVQFKR  221 (332)
T ss_dssp             SCCCSH-HHHHHHHCEEEEEEECSSS---EEEEEECCCS------CEEEEEEECSCCCCHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CCCCcH-hHHHHhcCCeEEEecCCCC---cceeeecCCC------CcEEEEEECCCCccHHHHHHHHHHHHHhCHHHHHH
Confidence            789998 9999999999877644432   3467776653      56899999999999999998764332222222222


Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCc
Q 002861          766 SIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDA  844 (873)
Q Consensus       766 ~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~  844 (873)
                      .++++.+.+.++.++|.++|++.|+++|+++|..++.+.  +++|+++++++.+++ |++|+++||||+|||+++|+++.
T Consensus       222 ~~~~~~~~~~~~~~al~~~d~~~l~~~~~~~~~~l~~~~--~~~p~l~~l~~~~~~~Ga~ga~~sGaG~gg~v~~l~~~~  299 (332)
T 2hfs_A          222 LYDNYTHIVSQAREALQKGDLQRLGQLMNANHDLCRQID--VSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASS  299 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCSEEEEESSCSSSEEEEEESSH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHcCCceEEeccCCCCcEEEEEecCc
Confidence            455555677888999999999999999999988888864  789999999999987 89999999999999999999975


Q ss_pred             chHHHHHHHHHhcCCCceEEEEEeec
Q 002861          845 ESATELRRMLEKDSNFNSEVYNWNIY  870 (873)
Q Consensus       845 ~~a~~i~~~L~~~~~~~v~v~~~~i~  870 (873)
                      +.++++.+.|++.......+|.+.+.
T Consensus       300 ~~a~~~~~~l~~~~~~~~~~~~~~~~  325 (332)
T 2hfs_A          300 DQRDAIVKGLKAKCPEAKFIWRYTVQ  325 (332)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEEEC
T ss_pred             ccHHHHHHHHHHHHhcCCceEEEEec
Confidence            56788999988753222235555443

>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*

Probab=100.00  E-value=1.1e-33  Score=315.36  Aligned_cols=311  Identities=21%  Similarity=0.168  Sum_probs=226.2

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND  608 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~  608 (873)
                      ++++|||||+|+|+|+|+      |||.++++||+++++    +++++.++..+++.+....  ...++  +..| ..+.
T Consensus         2 ~~~~aP~ki~L~Ge~~d~------~~~~~l~~ai~~~~~----v~v~~~~~~~i~i~~~~~~--~~~~~--l~~~-~~~~   66 (350)
T 2cz9_A            2 IKVKSPGRVNLIGEHTDY------TYGYVMPMAINLYTK----IEAEKHGEVILYSEHFGEE--RKFSL--NDLR-KENS   66 (350)
T ss_dssp             EEEEEEEEEEEECTTCGG------GTCEEEEEEEEEEEE----EEEEEESSEEEEETTTTEE--EEECT--TCCC-CCSS
T ss_pred             eEEEeccEEEEeecChhh------CCCEEEEEEeeceEE----EEEEECCCCeEEEEECCCC--ccccc--cCCC-CCCc
Confidence            678999999999999997      499999999999987    7787776555666432211  00110  1112 2245


Q ss_pred             hhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-cCC
Q 002861          609 PFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL-MGT  687 (873)
Q Consensus       609 ~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~-~g~  687 (873)
                      |.+++++++..+..   ......|++|++.++||.|+|||||||+++|++.|+++++|.++++++|+++|..+|.. .|.
T Consensus        67 ~~~~~~~~~~~l~~---~~~~~~g~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l~~~~l~~~el~~la~~~e~~~~g~  143 (350)
T 2cz9_A           67 WIDYVKGIFWVLKE---SDYEVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGV  143 (350)
T ss_dssp             THHHHHHHHHHHHH---TTCCCCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHh---cCCCCCCeEEEEECCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCC
Confidence            78899888765531   12234689999999999999999999999999999999999999999999999999985 689


Q ss_pred             CChhhhhHhhcccCe---eEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHH-HHHHHHH-------HH
Q 002861          688 GGGWQDQIGGLYPGI---KFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQ-VLQKVVT-------RY  756 (873)
Q Consensus       688 ~~G~~Dq~~~~~GG~---~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~-~l~~v~~-------~~  756 (873)
                      ++|++|++++.+||.   .++++.+.     .++++++++      +++++|++|+.++.+.. .+...+.       .+
T Consensus       144 ~~gi~d~~~~~~g~~~~~~~~d~~~~-----~~~~l~~~~------~~~~vl~~~~~~~~~~t~~~~~r~~~~~~a~~~~  212 (350)
T 2cz9_A          144 PCGILDQFAVVFGREGNVIFLDTHTL-----DYEYIPFPK------DVSILVFYTGVRRELASSEYAERKHIAEESLKIL  212 (350)
T ss_dssp             CCCSHHHHHHHHCCTTEEEEEETTTC-----CEEEEECCT------TEEEEEEECSCC----CHHHHHHHHHHHHHHHHH
T ss_pred             CccchhHHHHHhcCCCeEEEEecCCC-----cEEEEcCCC------CcEEEEEECCCCCccccchHHHHHHHHHHHHHHh
Confidence            999999999999863   44443221     356776653      56899999998854321 1221110       00


Q ss_pred             -----h--------hcCHHHH-HHHHHHHH--HHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHc
Q 002861          757 -----L--------QRDNLLI-SSIKRLTE--LAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFAD  820 (873)
Q Consensus       757 -----~--------~~~~~~~-~~~~~i~~--~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~  820 (873)
                           .        .-++.+. +..+.+.+  .+.++.++|.++|++.|+++|+++|..+++.+ ++++|+++++++.++
T Consensus       213 ~~~~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~-~~~~p~l~~l~~~~~  291 (350)
T 2cz9_A          213 GKGSSKEVREGELSKLPPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNY-EVSCKELDFFVERAL  291 (350)
T ss_dssp             TCSCGGGCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHH
T ss_pred             ChhhhhhCCHHHHhhCCHHHHHHHHHHhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHH
Confidence                 0        0122111 11122222  26678899999999999999999998877744 378999999999998


Q ss_pred             c-CCceEEecCCCccceeEEEeCCcchHHHHHHHHHh----cCCCceEEEEEeec
Q 002861          821 P-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEK----DSNFNSEVYNWNIY  870 (873)
Q Consensus       821 ~-ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~----~~~~~v~v~~~~i~  870 (873)
                      + |++|+|+||||+|||+++|+++ +.++++.+.|++    .+++..++|.++++
T Consensus       292 ~~Ga~ga~lsGaG~G~~v~~l~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  345 (350)
T 2cz9_A          292 KLGAYGARLTGAGFGGSAIALVDK-EDAETIGEEILREYLKRFPWKARHFIVEPS  345 (350)
T ss_dssp             HTTCSEEEECSSCSSSEEEEEEEG-GGHHHHHHHHHHHHHHHCCSCCEEEEECEE
T ss_pred             HcCCCEEEEecCCCceEEEEEEch-hhHHHHHHHHHHHHHHhhCCCCcEEEecCC
Confidence            7 8999999999999999999986 456666666654    33567888888774

>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}

Probab=100.00  E-value=6.2e-34  Score=312.03  Aligned_cols=299  Identities=21%  Similarity=0.218  Sum_probs=228.5

Q ss_pred             CeEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecc-cccceeEEEEEecCCc-EEEEeCCCCceeeecCCCCCCCC
Q 002861          527 RTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLE-SSLPIGTIIETTKMSG-VLISDDAGNQLHIEDLTPIATPF  604 (873)
Q Consensus       527 ~~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~-~~~pi~~~v~~~~~~~-i~i~~~~~~~~~~~~l~~l~~p~  604 (873)
                      +.++++|||||+|+|+|+||+      |+.+++++|+++ ++    ++++++++.. +.+.+....       .++  + 
T Consensus         5 ~~~~~~APgkinL~Ge~~d~~------g~~~l~~ai~~~~~~----v~v~~~~~~~~i~~~~~~~~-------~~~--~-   64 (308)
T 2x7i_A            5 RKGYGESTGKIILIGEHAVTF------GEPAIAVPFNAGKIK----VLIEALESGNYSSIKSDVYD-------GML--Y-   64 (308)
T ss_dssp             CEEEEEEEEEEEEEEBTTCCT------TSCEEEEEEEEEEEE----EEEEECCTTCCCEEEEEECS-------SCC--C-
T ss_pred             cceEEEEeeEEEEEecCeeec------CCeEEEEEEcCCEEE----EEEEECCCCCeeEEEecCCC-------CCh--h-
Confidence            358899999999999999985      889999999985 65    7787776544 555432110       011  1 


Q ss_pred             CCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-
Q 002861          605 DHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-  683 (873)
Q Consensus       605 ~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~-  683 (873)
                      ...+|.++++.++..+..   .   ..|++|++.++||.|+|||||||+++|++.|++++++.++++++|+++|..+|+ 
T Consensus        65 ~~~~~~~~v~~~~~~~~~---~---~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~E~~  138 (308)
T 2x7i_A           65 DAPDHLKSLVNRFVELNN---I---TEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQI  138 (308)
T ss_dssp             CTTSCHHHHHHHHHHHTT---C---CSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHh---h---CCCeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence            112577888888765421   1   248999999999999999999999999999999999999999999999999998 


Q ss_pred             HcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHH
Q 002861          684 LMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLL  763 (873)
Q Consensus       684 ~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~  763 (873)
                      ..|.++|. |+.++.+||..+++  .+.    .+++++.+      ++..+++++++.+++|+++++.+.+... ..+..
T Consensus       139 ~~g~~sG~-d~~~~~~g~~~~~~--~g~----~~~~~~~~------~~~~~vi~~~~~~~sT~~~~~~l~~~~~-~~~~~  204 (308)
T 2x7i_A          139 AHGKPSGI-DTQTIVSGKPVWFQ--KGH----AETLKTLS------LDGYMVVIDTGVKGSTRQAVHDVHKLCE-DPQYM  204 (308)
T ss_dssp             HHSSCCHH-HHHHHHHTSCEEEE--TTE----EEECSCCC------BSSEEEEEECCC--CCSCCCC---------CCHH
T ss_pred             HCCCCchH-HHHHhhCCceEEEE--cCC----CceEeccC------CCceEEEEECcCCCCHHHHHHHHHHHHh-cCchH
Confidence            46889998 78888899988766  332    35666543      2578999999988877765443322211 12222


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeC
Q 002861          764 ISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAK  842 (873)
Q Consensus       764 ~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~  842 (873)
                      .+ +.++.+++.++.++|.++|++.|+++|+++|+.++++  ++++|+++++++.+++ |++|+++||||+|||+++|++
T Consensus       205 ~~-~~~~~~~~~~~~~al~~~d~~~l~~~~~~~~~~~~~~--~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~GG~v~~l~~  281 (308)
T 2x7i_A          205 SH-VKHIGKLVLRASDVIEHHKFEALADIFNECHADLKAL--TVSHDKIEQLMKIGKENGAIAGKLTGAGRGGSMLLLAK  281 (308)
T ss_dssp             HH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHTTCSEEEESBTTTCSSEEEEES
T ss_pred             HH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCcEEEeeccCCCcEEEEEeC
Confidence            23 5556667778899999999999999999999988886  4789999999999987 899999999999999999999


Q ss_pred             CcchHHHHHHHHHhcCCCceEEEEEeec
Q 002861          843 DAESATELRRMLEKDSNFNSEVYNWNIY  870 (873)
Q Consensus       843 ~~~~a~~i~~~L~~~~~~~v~v~~~~i~  870 (873)
                      +++.++++.+.|++.+  ..++|..+++
T Consensus       282 ~~~~~~~~~~~l~~~~--~~~~~~~~~~  307 (308)
T 2x7i_A          282 DLPTAKNIVKAVEKAG--AAHTWIENLG  307 (308)
T ss_dssp             SHHHHHHHHHHHHHTT--CSEEEEEECB
T ss_pred             ChhHHHHHHHHHHhCC--CceEeeEeCC
Confidence            7567889999998863  3456666553

>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A

Probab=100.00  E-value=5.6e-33  Score=305.67  Aligned_cols=308  Identities=21%  Similarity=0.295  Sum_probs=224.6

Q ss_pred             CCeEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCC
Q 002861          526 PRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFD  605 (873)
Q Consensus       526 ~~~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~  605 (873)
                      +..++++|||||+|+|+|+|+.      |+.++++||+++.+    +++++.++..+++...........++++. .+.+
T Consensus         3 ~~~~~~~APgki~L~geh~~~~------G~~~l~~ai~~~~~----v~v~~~~~~~i~i~~~~~~~~~~~~~~~~-~~~~   71 (317)
T 1kkh_A            3 GSHMIIETPSKVILFGEHAVVY------GYRAISMAIDLTST----IEIKETQEDEIILNLNDLNKSLGLNLNEI-KNIN   71 (317)
T ss_dssp             TCCEEEEEEEEEEEECTTGGGG------TCCEEEEEEEEEEE----EEEEECCSSEEEEEETTTTEEEEEETTTG-GGCC
T ss_pred             CCCEEEEccEEEEEEcCCeeEc------CCEEEEEEecCeEE----EEEEECCCCeEEEEeCCCCCceEEEeccC-CccC
Confidence            4568999999999999999985      77799999999987    77887766667776543221111121111 1222


Q ss_pred             CCChhHHHHHHHHHhhhhhh--ccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 002861          606 HNDPFRLVKSALLVTGVIHE--KLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ  683 (873)
Q Consensus       606 ~~~~~~~~kaal~~~~~~~~--~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~  683 (873)
                      ..+| ++++.++..+.....  ......|++|++.++||.|+|||||||+++|++.|++++++.++++++|+++|..+|.
T Consensus        72 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~  150 (317)
T 1kkh_A           72 PNNF-GDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEK  150 (317)
T ss_dssp             GGGS-GGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred             cccc-hHHHHHHHHHHHHHHhhcccCCCCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            2234 445544443321000  0012469999999999999999999999999999999999999999999999999999


Q ss_pred             H-cCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCC--hhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcC
Q 002861          684 L-MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLAS--PQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRD  760 (873)
Q Consensus       684 ~-~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~--~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~  760 (873)
                      . .|+++| +|++++++||+.+++  ++     .+++++.+  +.+  ...+.++|++|+.+++|.++++.+...   .+
T Consensus       151 ~~~g~~sg-~D~~~~~~Gg~~~~~--~~-----~~~~~~~~~~~~l--~~~~~~vl~~~~~~~~T~~~~~~~~~~---~~  217 (317)
T 1kkh_A          151 EIQGKASI-TDTSTITYKGILEIK--NN-----KFRKIKGEFEEFL--KNCKFLIVYAEKRKKKTAELVNEVAKI---EN  217 (317)
T ss_dssp             HHSSSCCS-HHHHHHHHCSEEEES--SS-----CEEEECHHHHHHH--HTCCEEEEEEECCCSCHHHHHHHHHTC---TT
T ss_pred             HhcCCCch-HHHHHHHhCCeEEEc--CC-----CceEecCCccccc--ccCcEEEEEECCCcCcHHHHHHHHHHh---hc
Confidence            5 466666 799999999998772  22     24555432  111  012589999999999999987764221   11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEE
Q 002861          761 NLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALL  839 (873)
Q Consensus       761 ~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~  839 (873)
                      .  ...+.++   ...+.+++..+|++.|+++|+++|..++++  ++++|+++++++.+++ | +|+|+||||+|||+++
T Consensus       218 ~--~~~~~~~---~~~~~~a~~~~d~~~l~~~~~~~~~~~~~~--~~~~p~l~~~~~~~~~~G-~ga~~sGaG~GG~v~~  289 (317)
T 1kkh_A          218 K--DEIFKEI---DKVIDEALKIKNKEDFGKLMTKNHELLKKL--NISTPKLDRIVDIGNRFG-FGAKLTGAGGGGCVII  289 (317)
T ss_dssp             H--HHHHHHH---HHHHHHHHHCCSHHHHHHHHHHHHHHHHTT--TCCCHHHHHHHHHHHHHS-SEEEECSSSSSEEEEE
T ss_pred             c--HHHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHhcC-ceeEEeecCCCCEEEE
Confidence            1  1112222   233567888899999999999998888876  4889999999999987 7 9999999999999999


Q ss_pred             EeCCcchHHHHHHHHHhcCCCceEEEEEeec
Q 002861          840 LAKDAESATELRRMLEKDSNFNSEVYNWNIY  870 (873)
Q Consensus       840 l~~~~~~a~~i~~~L~~~~~~~v~v~~~~i~  870 (873)
                      ++++ +.++++.+.|++.   ..++|.++++
T Consensus       290 l~~~-~~~~~~~~~l~~~---g~~~~~~~~~  316 (317)
T 1kkh_A          290 LVNE-EKEKELLKELNKE---DVRIFNCRMM  316 (317)
T ss_dssp             ECCG-GGHHHHHHHHHTS---SCEEEEECBC
T ss_pred             Eech-hhHHHHHHHHHhc---CCEEEEEEec
Confidence            9986 4488999999875   3456766653

>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}

Probab=100.00  E-value=8.6e-32  Score=292.46  Aligned_cols=276  Identities=20%  Similarity=0.197  Sum_probs=210.8

Q ss_pred             eEEEEeceEEEeecccccCCCcccCCCCeEEEeee-ecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCC
Q 002861          528 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAI-SLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDH  606 (873)
Q Consensus       528 ~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI-~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~  606 (873)
                      .++++|||||+|+|+|.|++      |+.++++|| +++.+    +++++.+ ..+.+.+.                   
T Consensus         5 ~~~~~aP~ki~L~Ge~~~~~------g~~~l~~ai~~~~~~----v~v~~~~-~~~~i~~~-------------------   54 (292)
T 2oi2_A            5 VGVGQAHSKIILIGEHAVVY------GYPAISLPLLEVEVT----CKVVPAE-SPWRLYEE-------------------   54 (292)
T ss_dssp             CEEEEEEEEEEEECTTGGGG------TCCEEEEEEEEEEEE----EEEEECS-SCCCCCCC-------------------
T ss_pred             cEEEEeeeEEEEEeCCeeec------CCcEEEEEEcCcEEE----EEEEECC-CceEEEec-------------------
Confidence            37899999999999999974      889999999 99987    6776642 22211100                   


Q ss_pred             CChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-c
Q 002861          607 NDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL-M  685 (873)
Q Consensus       607 ~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~-~  685 (873)
                       ...+++..+...+.     .....|++|++.++||.|+|||||||+++|++.|+++++|.++++++|+++|..+|+. .
T Consensus        55 -~~~~~~~~~~~~~~-----~~~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~  128 (292)
T 2oi2_A           55 -DTLSMAVYASLEYL-----NITEACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAH  128 (292)
T ss_dssp             -SHHHHHHHHHHHHH-----TCSCCCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTT
T ss_pred             -CccchhhhhhHHHh-----cccCCceEEEEEecCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhc
Confidence             01122222222211     1124689999999999999999999999999999999999999999999999999983 5


Q ss_pred             CCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHH
Q 002861          686 GTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLIS  765 (873)
Q Consensus       686 g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~  765 (873)
                      +.++|+ |++++++||+.++.  .+.    .+++++++      +...+++++++.+++|+++++.+.+... ..   .+
T Consensus       129 ~~p~g~-d~~~~~~gg~~~~~--~~~----~~~~~~~~------~~~~~~i~~~~~~~sT~~~~~~l~~~~~-~~---~~  191 (292)
T 2oi2_A          129 MNPSGL-DAKTCLSDQPIRFI--KNV----GFTELEMD------LSAYLVIADTGVYGHTREAIQVVQNKGK-DA---LP  191 (292)
T ss_dssp             CCCCSH-HHHHHTCSSCEEEE--TTT----EEEECCCC------CSCEEEEEECSSCCCHHHHHHHHHHTGG-GG---HH
T ss_pred             CCCCch-hHHHHhcCceEEEE--cCC----CceeecCC------CCCEEEEEECCCCCcHHHHHHHHHHHHh-hh---HH
Confidence            889997 99999999998773  232    24565542      1234889999999999988765432211 10   23


Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCc
Q 002861          766 SIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDA  844 (873)
Q Consensus       766 ~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~  844 (873)
                      .++.+.+++.++.++|.++|++.|+++|+++|..++.+  ++++|+++++++.+++ |++|+++||||+|||+++|++++
T Consensus       192 ~~~~~~~~~~~~~~al~~~d~~~l~~~~~~~~~~l~~~--~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~Gg~v~~l~~~~  269 (292)
T 2oi2_A          192 FLHALGELTQQAEIAISQKDAEGLGQILSQAHLHLKEI--GVSSLEADSLVETALSHGALGAKMSGGGLGGCIIALVTNL  269 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHTTTCSEEEEESSSSSSEEEEEESCH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHhCCCceeeeccCCCCcEEEEEecCc
Confidence            45566666778899999999999999999999887775  4789999999999987 88999999999999999999976


Q ss_pred             chHHHHHHHHHhcC
Q 002861          845 ESATELRRMLEKDS  858 (873)
Q Consensus       845 ~~a~~i~~~L~~~~  858 (873)
                      +.++++.+.|++.+
T Consensus       270 ~~~~~~~~~l~~~~  283 (292)
T 2oi2_A          270 THAQELAERLEEKG  283 (292)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHhcC
Confidence            67889999998863

>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*

Probab=99.95  E-value=5.1e-27  Score=255.50  Aligned_cols=277  Identities=15%  Similarity=0.152  Sum_probs=203.8

Q ss_pred             eEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 002861          528 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN  607 (873)
Q Consensus       528 ~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~  607 (873)
                      .++++||+|++++|+++|.           +++|++.|.+.   +.+++.++..+.+..+.         .++  |.  +
T Consensus         2 ~i~v~aPaki~nlG~g~~v-----------l~~a~d~~~~~---~~~~~~~~~~~~i~~~~---------~~~--~~--~   54 (296)
T 1h72_C            2 KVRVKAPCTSANLGVGFDV-----------FGLCLKEPYDV---IEVEAIDDKEIIIEVDD---------KNI--PT--D   54 (296)
T ss_dssp             EEEEEEEEEEECTGGGTTT-----------EEEEEEEEEEE---EEEEEESSSSEEEEESC---------TTS--CC--C
T ss_pred             eEEEEEEeehhccccchhh-----------hHHhcccccEE---EEEEecCCCeEEEEEcC---------CcC--CC--C
Confidence            4889999999999998886           89999987541   45655554456654321         112  21  1


Q ss_pred             ChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-cC
Q 002861          608 DPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL-MG  686 (873)
Q Consensus       608 ~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~-~g  686 (873)
                      .|.+++..++..+.   +......|++|++.++||.|+|||||||+++|++.|+++++|.++++++|+++|..+|.. .|
T Consensus        55 ~~~n~v~~a~~~~~---~~~g~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~e~~~~g  131 (296)
T 1h72_C           55 PDKNVAGIVAKKMI---DDFNIGKGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSG  131 (296)
T ss_dssp             TTTSHHHHHHHHHH---HHTTCCCEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHS
T ss_pred             CccCcHHHHHHHHH---HHhCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCcccC
Confidence            14567776666542   112223689999999999999999999999999999999999999999999999999984 56


Q ss_pred             CCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHH
Q 002861          687 TGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISS  766 (873)
Q Consensus       687 ~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~  766 (873)
                      ++++ +|.+++++||+.+.... + +  ..++++++++      +++++|++|+...+|+++.+.+.    ...+ ....
T Consensus       132 ~~~~-ddv~~~~~gg~~~~~~~-~-~--~~~~~~~~~~------~~~~vl~~p~~~~~T~~~~~~l~----~~~~-~~~~  195 (296)
T 1h72_C          132 AKHA-DNVAPAIFGGFTMVTNY-E-P--LEVLHIPIDF------KLDILIAIPNISINTKEAREILP----KAVG-LKDL  195 (296)
T ss_dssp             SCCC-TTHHHHHHCSEEEEEET-T-T--TEEEEECCCS------CCCEEEECCSSCCCHHHHHHTSC----SCCC-HHHH
T ss_pred             CCCc-cchHHHHhCCEEEEEeC-C-c--eEEEEEcCCC------CeEEEEEeCCCCccHHHHHHhcc----CcCc-HHHH
Confidence            6664 67788999999988532 2 1  2456776653      46899999999888888765321    1111 1122


Q ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHH--HHHHHHHhhhCCCCChHHHHHHHHHHccCCceEEecCCCccceeEEEeCCc
Q 002861          767 IKRLTELAKNGRDALMNCDVDELGKIM--LEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDA  844 (873)
Q Consensus       767 ~~~i~~~~~~~~~AL~~gd~~~lg~lm--~~~~~~~~~l~~~vs~p~l~~l~~~a~~ga~G~klsGAGgGG~v~~l~~~~  844 (873)
                      +.++.. +.++.++|.++|++.|+++|  ++.|+..+.    .++|+++++++.+++.++|++|||||+  |+++|+ ++
T Consensus       196 ~~~~~~-~~~~~~al~~~d~~~~~~~~~~n~~h~~~~~----~~~p~l~~~~~~~~~~a~ga~~sGsG~--~v~~l~-~~  267 (296)
T 1h72_C          196 VNNVGK-ACGMVYALYNKDKSLFGRYMMSDKVIEPVRG----KLIPNYFKIKEEVKDKVYGITISGSGP--SIIAFP-KE  267 (296)
T ss_dssp             HHHHHH-HHHHHHHHHTTCHHHHHHHHTTCCSSHHHHH----TTSTTHHHHHHHHTTTEEEEEECTTSS--CEEEEE-CG
T ss_pred             HHHHHH-HHHHHHHHHcCCHHHHHHHHhcCcchhhhhh----ccCccHHHHHHHHHhhcceEEEecCCh--heEEEe-cH
Confidence            233322 34678999999999999999  444344332    467999999999986678999999999  999999 45


Q ss_pred             chHHHHHHHHHhcC
Q 002861          845 ESATELRRMLEKDS  858 (873)
Q Consensus       845 ~~a~~i~~~L~~~~  858 (873)
                      +.++++.+.|++.+
T Consensus       268 ~~~~~~~~~l~~~~  281 (296)
T 1h72_C          268 EFIDEVENILRDYY  281 (296)
T ss_dssp             GGHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhc
Confidence            78899999998763

>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}

Probab=99.94  E-value=4.6e-25  Score=240.21  Aligned_cols=279  Identities=15%  Similarity=0.155  Sum_probs=198.5

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND  608 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~  608 (873)
                      +++++|++..++|.++|.           +++||++|.+    +++++. +..+.+.....        ..+  |.+..+
T Consensus         3 ~~v~vPat~anlG~Gfd~-----------lg~al~l~d~----v~~~~~-~~~~~i~~~~~--------~~~--p~~~~n   56 (298)
T 3hul_A            3 LRIRVPATTANLGPGFDS-----------CGLALTLYLT----LDIGAE-ADSWYIEHNIG--------GGI--PHDETN   56 (298)
T ss_dssp             EEEEEEEEEESCTTCTTT-----------EEEEEEEEEE----EEEEEE-CSSCEEECCCC--------TTC--CSSTTS
T ss_pred             EEEEEeeceeccCCCcch-----------hhhhcccceE----EEEEEc-CCceEEEecCc--------ccC--CCCCCc
Confidence            789999999999999998           8999999987    667543 23455543211        112  222223


Q ss_pred             hhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCC
Q 002861          609 PFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTG  688 (873)
Q Consensus       609 ~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~  688 (873)
                      .  ++|++.....       ...|++|++.++||.++|||||||+++|++.|++++++.++++++|+++|..+|.     
T Consensus        57 l--v~~a~~~~~~-------~~~g~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~eg-----  122 (298)
T 3hul_A           57 V--IIETALNLAP-------NLTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIEG-----  122 (298)
T ss_dssp             H--HHHHHHHHCT-------TCCCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHS-----
T ss_pred             H--HHHHHHHHhc-------cCCceEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC-----
Confidence            2  5666654432       2468999999999999999999999999999999999999999999999999983     


Q ss_pred             ChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHH
Q 002861          689 GGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIK  768 (873)
Q Consensus       689 ~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~  768 (873)
                       ..+|++++++||+.+.... +.  .+.+.|+++|       +++++|+.++...+|+++.+...+    ..+ ..+.+.
T Consensus       123 -~~ddv~~~~~GG~~~~~g~-ge--~~~~~~~~~p-------~~~~vlv~p~~~~sT~~a~~~l~~----~~~-~~~~~~  186 (298)
T 3hul_A          123 -HPDNVAPAVLGNWVVGAKL-DG--EDFYVRHLFP-------DCALIAFIPKAELLTSESRGVLPD----TLP-FKEAVQ  186 (298)
T ss_dssp             -CSTTHHHHHHCSEEEEEEE-TT--EEEEEEECCC--------CEEEEEECCCCCC--------CC----EEE-HHHHHH
T ss_pred             -CcccCcccccCCEEEEEeC-CC--cEEEEEcCCC-------CeEEEEEECCCCCCcHHHHHHHhh----hcc-HHHHHH
Confidence             2268889999999986543 32  2344566654       368999999988888876543211    000 011222


Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHH--HHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcc
Q 002861          769 RLTELAKNGRDALMNCDVDELGKIMLEA--WRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE  845 (873)
Q Consensus       769 ~i~~~~~~~~~AL~~gd~~~lg~lm~~~--~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~  845 (873)
                      ++. .+..+..+|.++|++.++++|++.  |+..+.    ...|+++++++.+++ |++|++|||||+  |+++|++ ++
T Consensus       187 ~~~-~~~~~~~al~~~d~~~l~~~l~nd~~~e~~~~----~~~p~l~~l~~~~~~~Ga~ga~~SGsGp--tv~al~~-~~  258 (298)
T 3hul_A          187 ASS-IANVMIAAILRNDMTLAGEMMERDLWHEKYRS----QLVPHLAQIRDVAKNQGAYAACLSGAGP--TVLVFAP-RN  258 (298)
T ss_dssp             HHH-HHHHHHHHHTTTCHHHHHHHHTCCCC-----C----TTGGGHHHHHHHHHTTTCCEEEECTTSS--CEEEEEC-GG
T ss_pred             HHH-HHHHHHHHHHcCCHHHHHHHHhhhHHHHHHHH----hhCchHHHHHHHHHHCCCEEEEEeccch--heEEEEC-HH
Confidence            222 245688999999999999999732  332222    236899999999987 899999999997  8999998 57


Q ss_pred             hHHHHHHHHHhcCCCceEEEEEeeccC
Q 002861          846 SATELRRMLEKDSNFNSEVYNWNIYLE  872 (873)
Q Consensus       846 ~a~~i~~~L~~~~~~~v~v~~~~i~~~  872 (873)
                      .++++.+.|++.+ ...+++.++++.+
T Consensus       259 ~a~~v~~~l~~~~-~~~~~~~~~~~~~  284 (298)
T 3hul_A          259 LANKLQTSLQTLE-IDADVLLLDVEGS  284 (298)
T ss_dssp             GHHHHHHHHHTTC-CSSEEEEEEBCCC
T ss_pred             HHHHHHHHHHhcC-CCcEEEEcccCCC
Confidence            8999999998763 4567777777643

>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*

Probab=99.94  E-value=2.7e-25  Score=242.78  Aligned_cols=284  Identities=17%  Similarity=0.148  Sum_probs=207.1

Q ss_pred             eEEEEeceEEEe----ecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCC
Q 002861          528 TVKVELPVRIDF----AGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATP  603 (873)
Q Consensus       528 ~v~v~aP~Rv~L----~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p  603 (873)
                      .++++||+||||    .|.+.|-  |   |.-..+.++|+++.+    +++++.++..|.+.....        ..+  |
T Consensus         5 ~~~~~apAKiNL~L~v~~~r~DG--y---h~l~s~~~al~l~D~----l~~~~~~~~~i~~~g~~~--------~~~--p   65 (306)
T 3pyf_A            5 SVTVRVPGKVNLYLAVGDRREDG--Y---HELTTVFHAVSLVDE----VTVRNADVLSLELVGEGA--------DQL--P   65 (306)
T ss_dssp             CEEEEEEEEEEEEEEECCCCTTS--C---CCEEEEEEEEEEEEE----EEEEECSSCEEEEESTTG--------GGS--C
T ss_pred             cEEEEecceEEeecccCCcCCCC--C---cchheeEEEcccCCE----EEEEECCCCEEEEeCCCc--------cCC--C
Confidence            488999999999    6766663  2   456678899999998    777776555555543211        012  2


Q ss_pred             CCCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 002861          604 FDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ  683 (873)
Q Consensus       604 ~~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~  683 (873)
                      .+.   -|++..|+..+.   +.+....|++|++.++||.|+|||||||+++|++.|++++++.++++++|+++|.++| 
T Consensus        66 ~~~---~Nlv~~A~~~l~---~~~g~~~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la~~~~-  138 (306)
T 3pyf_A           66 TDE---RNLAWQAAELMA---EHVGRAPDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLG-  138 (306)
T ss_dssp             CST---TSHHHHHHHHHH---HHTTCCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHC-
T ss_pred             CCC---ccHHHHHHHHHH---HHhCCCCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC-
Confidence            222   234444444332   1222346999999999999999999999999999999999999999999999999887 


Q ss_pred             HcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHH
Q 002861          684 LMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLL  763 (873)
Q Consensus       684 ~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~  763 (873)
                              .|++++++||+.+......     .+.|++.++      +++++|++|+...+|+++.+.+.......+   
T Consensus       139 --------~Dv~~~~~Gg~~~~~g~ge-----~~~~l~~~~------~~~~vl~~P~~~vsT~~a~~~l~~~~~~~~---  196 (306)
T 3pyf_A          139 --------SDVPFALHGGTALGTGRGE-----ELATVLSRN------TFHWVLAFADSGLLTSAVYNELDRLREVGD---  196 (306)
T ss_dssp             --------TTHHHHHHBSEEEECSSSS-----CCEEECCSS------CEEEEEEECSSCCCHHHHHHHHHHHHHHSC---
T ss_pred             --------CCCceeecCceEEEEeeCC-----eEEEccCCC------CcEEEEEECCCCCcHHHHHHhhhhhccccc---
Confidence                    3999999999988764432     246666543      568999999999999988766532211100   


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH-HhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEe
Q 002861          764 ISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRL-HQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLA  841 (873)
Q Consensus       764 ~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~-~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~  841 (873)
                         .... ..+..+..+|.++|++.++++|.+.++. ...+     .|+++++++.+++ |++|++|||||+  |+|+|+
T Consensus       197 ---~~~~-~~~~~~~~al~~~d~~~l~~~l~n~le~~~~~~-----~P~l~~i~~~~~~~Ga~ga~mSGsGp--tvfal~  265 (306)
T 3pyf_A          197 ---PPRL-GEPGPVLAALAAGDPDQLAPLLGNEMQAAAVSL-----DPALARALRAGVEAGALAGIVSGSGP--TCAFLC  265 (306)
T ss_dssp             ---CCCC-CCHHHHHHHHHHTCHHHHGGGCEETTHHHHHHH-----CTHHHHHHHHHHHTTCSEEEECTTSS--EEEEEE
T ss_pred             ---cccc-cCHHHHHHHHHhCCHHHHHHHhccchHHHHHHh-----ChHHHHHHHHHHhcCCCEEEEcCcch--hheEEe
Confidence               0000 0234678899999999999988544432 2222     5899999999887 899999999997  999999


Q ss_pred             CCcchHHHHHHHHHhcCCCceEEEEEeecc
Q 002861          842 KDAESATELRRMLEKDSNFNSEVYNWNIYL  871 (873)
Q Consensus       842 ~~~~~a~~i~~~L~~~~~~~v~v~~~~i~~  871 (873)
                      ++++.++++.+.|++.+ ...+++..+++.
T Consensus       266 ~~~~~a~~~~~~l~~~g-~~~~v~~~~~~~  294 (306)
T 3pyf_A          266 TSASSAIDVGAQLSGAG-VCRTVRVATGPV  294 (306)
T ss_dssp             SSHHHHHHHHHHHHHTT-SSSEEEEEEECC
T ss_pred             CCHHHHHHHHHHHHhcC-CcceEEEeecCC
Confidence            98778899999998763 456677766653

>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}

Probab=99.91  E-value=1.4e-22  Score=222.88  Aligned_cols=292  Identities=11%  Similarity=0.072  Sum_probs=196.4

Q ss_pred             CeEEEEeceEEEeecccccCCCcccCCCCeEEEeee-ecccccceeEEEEE-ecC-CcEEEEeCCCCceeeecCCCCCCC
Q 002861          527 RTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAI-SLESSLPIGTIIET-TKM-SGVLISDDAGNQLHIEDLTPIATP  603 (873)
Q Consensus       527 ~~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI-~l~~~~pi~~~v~~-~~~-~~i~i~~~~~~~~~~~~l~~l~~p  603 (873)
                      ..++++||+||+|+|.|+|++.-...++-..+++++ +++.+    ++++. .++ ..+.+..+           ..  +
T Consensus         7 ~~~~~~ap~~i~l~~~~g~~~~g~~lp~~dslg~al~~l~~~----~~v~~~~~~~~~~~~~~~-----------g~--~   69 (317)
T 2gs8_A            7 NVITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLENMFTT----TSVSFLPDTATSDQFYIN-----------GI--L   69 (317)
T ss_dssp             CEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEEEEEEE----EEEEECCTTCCSCEEEET-----------TE--E
T ss_pred             CcEEEEecCcEEEEeeeeeccCCcccCCCCceEEEeecccce----EEEEEEcCCCCeEEEEEC-----------CC--c
Confidence            458999999999999999997422222334678888 46665    55654 221 11222211           10  0


Q ss_pred             CCCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 002861          604 FDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ  683 (873)
Q Consensus       604 ~~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~  683 (873)
                       ...+|.++++.++..+.   +.. . .|++|++.++||.|+|||||||+++|++.|+++++|.++++++|+++|..+|.
T Consensus        70 -~~~~~~n~v~~~~~~~~---~~~-~-~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~~G  143 (317)
T 2gs8_A           70 -QNDEEHTKISAIIDQFR---QPG-Q-AFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFASG  143 (317)
T ss_dssp             -CCHHHHHHHHHHHTTTC---CTT-C-CCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHG
T ss_pred             -cccchHHHHHHHHHHHH---Hhc-C-CCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Confidence             01146678887776542   111 2 78999999999999999999999999999999999999999999999987642


Q ss_pred             HcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCC-cchHHHHHHHHHHHHhhcCHH
Q 002861          684 LMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQ-VRLAHQVLQKVVTRYLQRDNL  762 (873)
Q Consensus       684 ~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~-tr~t~~~l~~v~~~~~~~~~~  762 (873)
                               +++++++||+..... ++.  .....|++  .+    +...+++++++. ...|...++.+.+.   . +.
T Consensus       144 ---------~~~~~~~GG~~~~~~-~~~--~~~~~~~~--~~----~~~~v~i~~~~~~~~~tt~~~~~~~~~---~-~~  201 (317)
T 2gs8_A          144 ---------SSSRSFFGPVAAWDK-DSG--AIYKVETD--LK----MAMIMLVLNAAKKPISSREGMKLCRDT---S-TT  201 (317)
T ss_dssp             ---------GGGGGGSCSEEEECT-TTC--CEEECCCC--CC----EEEEEEECCCSSCCSCHHHHHHHHHHH---C-TT
T ss_pred             ---------hhHhhhcCChheEee-CCC--ceeEEEcc--cc----ccEEEEEEECCCcCcccHHHHHHHhhc---C-HH
Confidence                     567899999998764 332  12234442  21    222344446654 33566655543322   1 11


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhC----CC--CChHHHHHHHHHH---c-cCCceEEecCCC
Q 002861          763 LISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELD----PH--CSNEFVDRLFAFA---D-PYCCGYKLVGAG  832 (873)
Q Consensus       763 ~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~----~~--vs~p~l~~l~~~a---~-~ga~G~klsGAG  832 (873)
                      ..+...+....+.++..||.++|++.||++|++++..+++++    +.  ...|...++++.+   + .|+.++.+||||
T Consensus       202 ~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~~G~~~~~~SGaG  281 (317)
T 2gs8_A          202 FDQWVEQSAIDYQHMLTYLKTNNFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQEGFACYFTMDAG  281 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHhcCCcEEEEecCC
Confidence            112223345567789999999999999999998876555432    11  2346666666433   3 388899999998


Q ss_pred             ccceeEEEeCCcchHHHHHHHHHhcCCCceEEEEEeec
Q 002861          833 GGGFALLLAKDAESATELRRMLEKDSNFNSEVYNWNIY  870 (873)
Q Consensus       833 gGG~v~~l~~~~~~a~~i~~~L~~~~~~~v~v~~~~i~  870 (873)
                      +  ++++|+++ +.++++.+.+++    ..++|.+++.
T Consensus       282 p--tv~~l~~~-~~~~~v~~~l~~----~~~~~~~~~~  312 (317)
T 2gs8_A          282 P--NVKVLCLE-KDLAQLAERLGK----NYRIIVSKTK  312 (317)
T ss_dssp             S--CEEEEEEG-GGHHHHHHHHHT----TSEEEEEEBC
T ss_pred             C--eEEEEEcH-HHHHHHHHHHhc----CCeEEEEecC
Confidence            8  99999985 567889999987    4678887764

>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A

Probab=99.91  E-value=1e-22  Score=224.83  Aligned_cols=297  Identities=13%  Similarity=0.090  Sum_probs=195.5

Q ss_pred             eEEEEeceEEEeecccccCCCcccCCCCeEEEeeee-cccccceeEEEEEecCC-cEEEEeCCCCceeeecCCCCCCCCC
Q 002861          528 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAIS-LESSLPIGTIIETTKMS-GVLISDDAGNQLHIEDLTPIATPFD  605 (873)
Q Consensus       528 ~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~-l~~~~pi~~~v~~~~~~-~i~i~~~~~~~~~~~~l~~l~~p~~  605 (873)
                      .++++||+||+|+|.|.|+..-...-+-..+++|++ ++++    ++++..++. ...+..+           .-..|  
T Consensus         9 ~~~~~ap~nialiky~gk~~~~~~lP~~dslglal~~~~~~----~~v~~~~~~~~~~~~i~-----------g~~~~--   71 (332)
T 3qt5_A            9 SGKARAHTNIALIKYWGKADETYIIPMNNSLSVTLDRFYTE----TKVTFDPDFTEDCLILN-----------GNEVN--   71 (332)
T ss_dssp             EEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEEEEEEE----EEEEEETTCSSCEEEET-----------TEECC--
T ss_pred             EEEEEecCcEEEEeeeeeccCCccccCCCceEEEecCCCCe----eEEEEcCCCCccEEEEC-----------CccCC--
Confidence            478999999999999999973111113345777776 3444    445433221 1111111           10011  


Q ss_pred             CCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHc
Q 002861          606 HNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM  685 (873)
Q Consensus       606 ~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~  685 (873)
                       .++.+++..++..+.   +......|++|++.++||.++|||||||.++|++.|++++++.++++++|+++|.++|   
T Consensus        72 -~~~~n~v~~~~~~~~---~~~~~~~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~l~~~el~~la~~~~---  144 (332)
T 3qt5_A           72 -AKEKEKIQNYMNIVR---DLAGNRLHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRGS---  144 (332)
T ss_dssp             -HHHHHHHHHHHHHHH---HHHTCCCEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHC---
T ss_pred             -cchHHHHHHHHHHHH---HhcCCCCCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhc---
Confidence             235567766665542   1222346899999999999999999999999999999999999999999999998874   


Q ss_pred             CCCChhhhhHhhcccCeeEEecC-CCCcceeEEEeecCChhhhhhcCcEEEEEEeCC---cchHHHHHHHHHHHHhhcCH
Q 002861          686 GTGGGWQDQIGGLYPGIKFTSSF-PGIPLRLQVIPLLASPQLILELQQRLLVVFTGQ---VRLAHQVLQKVVTRYLQRDN  761 (873)
Q Consensus       686 g~~~G~~Dq~~~~~GG~~~~~~~-~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~---tr~t~~~l~~v~~~~~~~~~  761 (873)
                          |  |.+++++||+..+... ++.  .....|++..+.   ..+++++++.+..   +.+++..+++.++.    +.
T Consensus       145 ----g--~~~~~~~GG~~~~~~g~~~~--~~~~~~l~~~~~---~~~l~~vv~vp~~~~~~~ss~~~~~~~~~~----s~  209 (332)
T 3qt5_A          145 ----G--SASRSIFGGFAEWEKGHDDL--TSYAHGINSNGW---EKDLSMIFVVINNQSKKVSSRSGMSLTRDT----SR  209 (332)
T ss_dssp             ----G--GGGGGGSCSEEEEECCSSTT--TCEEEEECCTTG---GGGEEEEEECCCCCCCC--CHHHHHHHHHH----CT
T ss_pred             ----C--CchhhhcCCeEEEecCCCCc--cceeeecccccC---CCCcEEEEEEEcCCCCCCchHHHHHHhhhc----Ch
Confidence                3  7788999999986432 221  112355541100   0245666555443   55677777765332    11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH-HHHhhhC---CC--CChHHHHHHHHHHc----cCCceEEecCC
Q 002861          762 LLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAW-RLHQELD---PH--CSNEFVDRLFAFAD----PYCCGYKLVGA  831 (873)
Q Consensus       762 ~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~-~~~~~l~---~~--vs~p~l~~l~~~a~----~ga~G~klsGA  831 (873)
                      .+.+.+.++.+.+..+..||.++|++.|+++|++++ .+++...   +.  ...|+++++++.++    .|++|+.+|||
T Consensus       210 ~~~~~v~~~~~~~~~l~~Al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~~Ga~~a~~SGa  289 (332)
T 3qt5_A          210 FYQYWLDHVDEDLNEAKEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRKANLPCYFTMDA  289 (332)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence            223344455556778999999999999999998443 2222211   11  14589998888883    48999999999


Q ss_pred             CccceeEEEeCCcchHHHHHHHHHhcCCCceEEEEE
Q 002861          832 GGGGFALLLAKDAESATELRRMLEKDSNFNSEVYNW  867 (873)
Q Consensus       832 GgGG~v~~l~~~~~~a~~i~~~L~~~~~~~v~v~~~  867 (873)
                      |+  ++++|+++ +.++++.+.|++.+. ..+++.+
T Consensus       290 GP--tv~~l~~~-~~a~~v~~~l~~~~~-~~~~~v~  321 (332)
T 3qt5_A          290 GP--NVKVLVEK-KNKQAVMEQFLKVFD-ESKIIAS  321 (332)
T ss_dssp             SS--CEEEEEEH-HHHHHHHHHHHTTSC-GGGEEEE
T ss_pred             CC--cEEEEECH-HHHHHHHHHHHHhCC-CceEEEe
Confidence            87  99999985 678999999987632 3345544

>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*

Probab=99.91  E-value=4.4e-24  Score=229.55  Aligned_cols=250  Identities=14%  Similarity=0.087  Sum_probs=183.6

Q ss_pred             EEEEeceEEEe----ecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCC
Q 002861          529 VKVELPVRIDF----AGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPF  604 (873)
Q Consensus       529 v~v~aP~Rv~L----~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~  604 (873)
                      ++++|||||||    .|.+.|  +|   |++.++++||+++.+    + +++  +..+.+..           +.+  |.
T Consensus         5 ~~~~aPakinl~l~v~g~r~d--gy---h~~~sl~~ai~l~~~----v-~~~--~~~i~i~~-----------~~~--~~   59 (271)
T 2v8p_A            5 IKVLSPAKINLGLWVLGRLPS--GY---HEILTLYQEIPFYDE----I-YIR--EGVLRVET-----------NIG--IP   59 (271)
T ss_dssp             EEEEEEEEEEEEEEEEEECTT--SC---EEEEEEEEEEEEEEE----E-EEE--ESSCEEEE-----------SSC--CC
T ss_pred             EEEeecceEEeeEeecccCCC--CC---ceEEEEEEEcCcccE----E-EEe--CCeEEEEe-----------CCC--CC
Confidence            78999999999    688888  22   478899999999987    5 655  23444443           111  11


Q ss_pred             CCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 002861          605 DHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL  684 (873)
Q Consensus       605 ~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~  684 (873)
                         ++.+++..++..+.   +......|++|++.++||.|+|||||||+++|++.|++++++.++++++|+++|.++|. 
T Consensus        60 ---~~~nlv~~a~~~~~---~~~g~~~g~~i~i~~~IP~g~GLGsSsa~a~a~l~al~~l~~~~l~~~el~~la~~~e~-  132 (271)
T 2v8p_A           60 ---QEENLVYKGLREFE---RITGIEINYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSISA-  132 (271)
T ss_dssp             ---TTTCHHHHHHHHHH---HHHCCCCCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHCT-
T ss_pred             ---CCchHHHHHHHHHH---HHhCCCCCeEEEEEeCCCCCCCCchHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC-
Confidence               23456665555432   11222368999999999999999999999999999999999999999999999999872 


Q ss_pred             cCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHH
Q 002861          685 MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLI  764 (873)
Q Consensus       685 ~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~  764 (873)
                              |++++++||+.+......     .+++++++      .++++++++|+...+|.++++.+...   +.    
T Consensus       133 --------dv~~~~~gg~~~~~g~g~-----~~~~l~~~------~~~~~vl~~p~~~~sT~~~~~~~~~~---~~----  186 (271)
T 2v8p_A          133 --------DAPFFLLGKSAIGRGKGE-----VLEPVETE------ISGKITLVIPQVSSSTGRVYSSLREE---HF----  186 (271)
T ss_dssp             --------TTGGGGTCSEEEEETTTT-----EEEECCCC------CCSEEEEEECSSCCCHHHHHHTCCTT---SC----
T ss_pred             --------CHHHHhcCCeEEEEEcCC-----EEEEccCC------CCcEEEEEeCCCCCCHHHHHHhcccc---cC----
Confidence                    899999999998764432     35666533      14689999999999998876542110   10    


Q ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEE-ecCCCccceeEEEeC
Q 002861          765 SSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYK-LVGAGGGGFALLLAK  842 (873)
Q Consensus       765 ~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~k-lsGAGgGG~v~~l~~  842 (873)
                         .+    +..+ .+|.++|++.++++|++..+..+.    ..+|+++++++.+++ |+  ++ |||||+  |+++|++
T Consensus       187 ---~~----~~~~-~al~~~d~~~~~~~~~n~l~~~~~----~~~p~l~~~~~~~~~~Ga--a~~mSGsG~--~v~~l~~  250 (271)
T 2v8p_A          187 ---VT----PEYA-EEKIQRIISGEVEEIENVLGDIAR----ELYPEINEVYRFVEYLGF--KPFVSGSGS--TVYFFGG  250 (271)
T ss_dssp             ---CC----HHHH-HHHHHHHHTTCGGGCCBHHHHHHH----HHCHHHHHHHHHHHHTTC--CCEECTTSS--CEEESSC
T ss_pred             ---cc----hhHH-HHhhcCCHHHHHHHHhCChhhHhH----HhChHHHHHHHHHHhCCC--ccCccccCc--CeEEEeC
Confidence               11    1234 788889999898888544333211    236899999999886 66  89 999985  9999998


Q ss_pred             CcchHHHHHH
Q 002861          843 DAESATELRR  852 (873)
Q Consensus       843 ~~~~a~~i~~  852 (873)
                      +.+.++++.+
T Consensus       251 ~~~~a~~~~~  260 (271)
T 2v8p_A          251 ASEELKKAAK  260 (271)
T ss_dssp             CCHHHHHHHH
T ss_pred             CHHHHHHHHh
Confidence            7667777766

>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*

Probab=99.90  E-value=3.1e-23  Score=224.29  Aligned_cols=252  Identities=16%  Similarity=0.178  Sum_probs=177.4

Q ss_pred             EEEEeceEEEe----ecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCC
Q 002861          529 VKVELPVRIDF----AGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPF  604 (873)
Q Consensus       529 v~v~aP~Rv~L----~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~  604 (873)
                      +.++|||||||    +|+|+|  +|   |.+.++.+||+++.+    +++++.++..+.+.++.         +.+  |.
T Consensus         3 ~~~~apaKinL~L~v~g~~~d--Gy---h~l~sl~~ai~l~~~----v~v~~~~~~~i~i~~~~---------~~~--~~   62 (283)
T 2ww4_A            3 TQWPSPAKLNLFLYITGQRAD--GY---HTLQTLFQFLDYGDT----ISIELRDDGDIRLLTPV---------EGV--EH   62 (283)
T ss_dssp             EEEEEEEEEEEEEEEEEECTT--SC---EEEEEEEEEEEEEEE----EEEEEESSSCEEECSCB---------TTB--CG
T ss_pred             ccccCceeEEeeeeccCCCCC--CC---cceEEEEEECCCCcE----EEEEECCCCcEEEEeCC---------CCC--CC
Confidence            55789999999    799999  22   478899999999998    77877765566664321         112  21


Q ss_pred             CCCChhHHHHHHHHHhhhhhhcc------ccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 002861          605 DHNDPFRLVKSALLVTGVIHEKL------IESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLV  678 (873)
Q Consensus       605 ~~~~~~~~~kaal~~~~~~~~~~------~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la  678 (873)
                          ..+++..++..+.   +..      ....|++|++.++||.|+|||||||+++|++.|+++++|.++++++|+++|
T Consensus        63 ----~~nlv~~a~~~~~---~~~~~~~~~g~~~g~~i~i~~~IP~g~GLGsSsa~~~a~l~al~~l~~~~l~~~~l~~la  135 (283)
T 2ww4_A           63 ----EDNLIVRAARLLM---KTAADSGRLPTGSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMG  135 (283)
T ss_dssp             ----GGSHHHHHHHHHH---HHHHHTTCSCTTCEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             ----cccHHHHHHHHHH---HHhhhhcccCCCCceEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Confidence                1346666555432   111      224689999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhh
Q 002861          679 LLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQ  758 (873)
Q Consensus       679 ~~~E~~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~  758 (873)
                      .++|.         |++++++||+.+....++     .+++++++       +..+++++|+...+|+++++. .+ ...
T Consensus       136 ~~~e~---------dv~~~~~gg~~~~~g~g~-----~~~~l~~~-------~~~~vl~~p~~~~sT~~~~~~-~~-~~~  192 (283)
T 2ww4_A          136 LTLGA---------DVPVFVRGHAAFAEGVGE-----ILTPVDPP-------EKWYLVAHPGVSIPTPVIFKD-PE-LPR  192 (283)
T ss_dssp             HTTCT---------THHHHHHTBCEEEETTTT-----EEEECCCC-------CCEEEEECCSCCCCHHHHHTC-TT-SCC
T ss_pred             HHhCC---------CHHHhhcCCeEEEEecCc-----cceEcCCC-------CcEEEEEeCCCCCchHHHHhc-cc-ccc
Confidence            88763         899999999998765433     34666543       468999999999999998765 22 111


Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHccCCceEEecCCCccceeE
Q 002861          759 RDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFAL  838 (873)
Q Consensus       759 ~~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~ga~G~klsGAGgGG~v~  838 (873)
                      .+.     ...+        .+|.++++      +++.+.....     ..|+++++++.+++.. |+++||||+  |++
T Consensus       193 ~~~-----~~~l--------~~l~~~~~------~nd~~~~~~~-----~~p~l~~i~~~~~~~G-~a~~SGsG~--tvf  245 (283)
T 2ww4_A          193 NTP-----KRSI--------ETLLKCEF------SNDCEVIARK-----RFREVDAVLSWLLEYA-PSRLTGTGA--CVF  245 (283)
T ss_dssp             CCC-----CCCH--------HHHHTSCC------CBTTHHHHHH-----HCHHHHHHHHHHHTTS-CEEECTTSS--CEE
T ss_pred             cch-----HHHH--------HHHHhhhh------cCchHHHHHh-----cChHHHHHHHHHHHcC-CceECCccc--ceE
Confidence            110     0111        12222321      1211111222     2589999999998733 899999986  999


Q ss_pred             EEeCCcchHHHHHHHHHhc
Q 002861          839 LLAKDAESATELRRMLEKD  857 (873)
Q Consensus       839 ~l~~~~~~a~~i~~~L~~~  857 (873)
                      +++++++.++++.+.|++.
T Consensus       246 ~l~~~~~~a~~~~~~l~~~  264 (283)
T 2ww4_A          246 AEFDTESEARQVLEQAPEW  264 (283)
T ss_dssp             EEESSHHHHHHHHHHCCC-
T ss_pred             EEeCCHHHHHHHHHHhhhh
Confidence            9998755678888887654

>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5

Probab=99.89  E-value=3.7e-23  Score=222.81  Aligned_cols=261  Identities=17%  Similarity=0.084  Sum_probs=182.1

Q ss_pred             EEEEeceEEEe----ecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCC
Q 002861          529 VKVELPVRIDF----AGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPF  604 (873)
Q Consensus       529 v~v~aP~Rv~L----~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~  604 (873)
                      +++ |||||||    .|.+.|-  |   |...+++++|+++.+    +++++ +  .+.+..+.          ++  | 
T Consensus         2 i~~-aPakinl~l~v~g~r~dg--y---h~~~sl~~ai~l~~~----v~~~~-~--~~~i~~~~----------~~--~-   55 (275)
T 1uek_A            2 ERL-APAKVNLGLSVRFRREDG--Y---HELHTLFAPFSLADR----LVVEP-V--SSGLHFQG----------PY--G-   55 (275)
T ss_dssp             EEE-EEEEEEEEEEEEEECTTS--S---EEEEEEEEEEEEEEE----EEEEE-E--SSCEEEES----------TT--G-
T ss_pred             cee-ecCeEEEeeeecCcCCCC--C---ceeeEEEEEcCCCCE----EEEEE-C--cEEEEEcC----------CC--C-
Confidence            566 9999999    4887772  2   477899999999987    66665 2  23332211          11  1 


Q ss_pred             CCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 002861          605 DHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL  684 (873)
Q Consensus       605 ~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~  684 (873)
                          ..+++..++..+.   +......|++|++.++||.|+|||||||+++|++.|++++++.++   +|+++|..+|. 
T Consensus        56 ----~~n~v~~a~~~~~---~~~g~~~g~~i~i~~~IP~g~GLGSSsa~a~a~l~al~~l~~~~l---~l~~la~~~g~-  124 (275)
T 1uek_A           56 ----RENLAYRAASLYL---EAAGQPGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEV---DLFALARTLGA-  124 (275)
T ss_dssp             ----GGSHHHHHHHHHH---HHTTCCCEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC---CHHHHHHHHCT-
T ss_pred             ----CccHHHHHHHHHH---HHhCCCCCEEEEEecCCCCcCcccHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHhCC-
Confidence                1235655554432   112234689999999999999999999999999999999999988   89999888752 


Q ss_pred             cCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHH
Q 002861          685 MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLI  764 (873)
Q Consensus       685 ~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~  764 (873)
                              |++++++||+.+....+.     .++|++ ++      ++++++++|+.+.+|+++++.+........+.  
T Consensus       125 --------dv~~~~~Gg~~~~~g~g~-----~~~~l~-~~------~~~~vl~~p~~~~sT~~~~~~~~~~~~~~~~~--  182 (275)
T 1uek_A          125 --------DVPFFLLGRGAEARGVGE-----RLKPLA-LP------PVPAVVFFPGLRVPTPLVYRAVRPEDFGPDLP--  182 (275)
T ss_dssp             --------THHHHHHCSEEEEETTTT-----EEEEEC-CC------CEEEEEEECCCCCCHHHHHHTCCGGGCCCCCC--
T ss_pred             --------ChHHHhcCCeEEEEccCc-----eeEEcc-CC------CcEEEEEeCCCCCchHHHHHhCchhhcccCCC--
Confidence                    999999999998865432     356775 32      56899999999999998876532110000000  


Q ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCC
Q 002861          765 SSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKD  843 (873)
Q Consensus       765 ~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~  843 (873)
                               +..+..+|.++ ++.  +.|++.+.....     .+|+++++++.+++ |++|++|||||+  |+++|+++
T Consensus       183 ---------~~~~~~al~~~-~~~--~~~n~l~~~~~~-----~~p~l~~l~~~~~~~Ga~ga~~SGsG~--~v~~l~~~  243 (275)
T 1uek_A          183 ---------VEAILEALARG-EEP--PYWNSLEGPAFR-----LFPELKEVRGRMRALGLRGVLMSGSGS--AFFGLAEG  243 (275)
T ss_dssp             ---------HHHHHHHHHHT-CCC--SCCBTTHHHHHH-----HCTHHHHHHHHHHHTTCEEEEECTTSS--CEEEECSS
T ss_pred             ---------hHHHHHHHHhc-ccc--ccccchHHHHHH-----hChHHHHHHHHHHhCCCCEEEEecccc--CeEEEeCC
Confidence                     12345556555 332  233331111112     24899999999887 899999999996  99999987


Q ss_pred             cchHHHHHHHHHhcCCCceEEEEEeecc
Q 002861          844 AESATELRRMLEKDSNFNSEVYNWNIYL  871 (873)
Q Consensus       844 ~~~a~~i~~~L~~~~~~~v~v~~~~i~~  871 (873)
                      ++.++++.+.|++.   . ++|..+++.
T Consensus       244 ~~~~~~~~~~l~~~---~-~~~~~~~~~  267 (275)
T 1uek_A          244 PDHARRAAEALRAW---G-RAWAGTLGG  267 (275)
T ss_dssp             HHHHHHHHHHHTTT---S-EEEEEEECC
T ss_pred             HHHHHHHHHHhhhc---c-EEEEEEecC
Confidence            55788899998864   4 788887753

>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2

Probab=99.85  E-value=8.3e-19  Score=199.29  Aligned_cols=292  Identities=19%  Similarity=0.146  Sum_probs=183.7

Q ss_pred             eEEEEeceEEEeecccccCCCcccCCCCeEEEeeee---cccccceeEEEEEecC-CcEEEEeCCCCceeeecCCCCCCC
Q 002861          528 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAIS---LESSLPIGTIIETTKM-SGVLISDDAGNQLHIEDLTPIATP  603 (873)
Q Consensus       528 ~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~---l~~~~pi~~~v~~~~~-~~i~i~~~~~~~~~~~~l~~l~~p  603 (873)
                      .++++||+||.|++.|.++..-...+.-..+++|++   ++++    ++|+..++ ..+.+.           ++.-..+
T Consensus        25 ~~~~~Ap~nialik~~gkr~~~~~~P~~dslg~aL~~~~l~~~----~~v~~~~~~~~~~i~-----------i~G~~~~   89 (416)
T 1fi4_A           25 TASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTL----TSAATAPEFERDTLW-----------LNGEPHS   89 (416)
T ss_dssp             EEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEE----EEEEECTTCCSCBCT-----------TTCCBSS
T ss_pred             EEEEEecceEEEEecccccCCceecccccceEEEEEcCCCcce----EEEEEcCCCCccEEE-----------ECCcccc
Confidence            488999999999999998763222233457899998   7876    56655322 111111           1110011


Q ss_pred             CCCCChhHHHHHHHHHhhhhhhc---------cccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHH
Q 002861          604 FDHNDPFRLVKSALLVTGVIHEK---------LIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENV  674 (873)
Q Consensus       604 ~~~~~~~~~~kaal~~~~~~~~~---------~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL  674 (873)
                      ..    .++++.++..+......         .....|++|++.++||.++|||||||.++|++.|+++++|.+++.++|
T Consensus        90 ~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eL  165 (416)
T 1fi4_A           90 ID----NERTQNCLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEI  165 (416)
T ss_dssp             SS----SSSHHHHHHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHH
T ss_pred             cc----chHHHHHHHHHHHHhccccccccccccccCCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            11    12455555443210000         011468999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCChhhhhHhhcccCeeEEecCCC-CcceeEEEeecCChhhhhhcCcE--EEEEEeCC-cchHHHHHH
Q 002861          675 ARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPG-IPLRLQVIPLLASPQLILELQQR--LLVVFTGQ-VRLAHQVLQ  750 (873)
Q Consensus       675 ~~la~~~E~~~g~~~G~~Dq~~~~~GG~~~~~~~~~-~~~~~~v~pl~~~~~~~~~~~~~--lllv~tg~-tr~t~~~l~  750 (873)
                      +++|..++       |  |++++++||+.......+ ........+++..+.+   .++.  +++++++. +..+...++
T Consensus       166 a~lA~~g~-------G--s~~~sl~GG~v~~~~G~~~~~~~~~~~~l~~~~~~---p~l~~vvlv~~~~~~~~sst~~~~  233 (416)
T 1fi4_A          166 SRIARKGS-------G--SACRSLFGGYVAWEMGKAEDGHDSMAVQIADSSDW---PQMKACVLVVSDIKKDVSSTQGMQ  233 (416)
T ss_dssp             HHHHHHHH-------G--GGGGGGSSSEEEEECCSCTTCTTCEEEEEECGGGS---TTEEEEEEEECCCSCCCCHHHHHH
T ss_pred             HHHHhccC-------C--chheEeeCCcEEEecCCcCCCCCceeEEecCccCC---cccEEEEEEECCCCCCcCCHHHHH
Confidence            99997664       2  678899999988642210 1111233455432111   1334  44555533 345666555


Q ss_pred             HHHHHHhhcCHHHHHHHHH-HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhC----CC--CChHHHHHHHHHHc---
Q 002861          751 KVVTRYLQRDNLLISSIKR-LTELAKNGRDALMNCDVDELGKIMLEAWRLHQELD----PH--CSNEFVDRLFAFAD---  820 (873)
Q Consensus       751 ~v~~~~~~~~~~~~~~~~~-i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~----~~--vs~p~l~~l~~~a~---  820 (873)
                      ..++.    .+.+...+.+ ....+..+..||.++|++.|+++|.+++..+..++    +.  ...|...++++.+.   
T Consensus       234 ~~~~~----~~~~~~~~~~i~~~~~~~l~~AL~~gD~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r  309 (416)
T 1fi4_A          234 LTVAT----SELFKERIEHVVPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTIN  309 (416)
T ss_dssp             HHHHH----CSHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHhhc----CHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHH
Confidence            54322    1111222332 33456789999999999999999987655443311    11  24466777765543   


Q ss_pred             c--C-CceEEecCCCccceeEEEeCCcchHHHHHHHHHhc
Q 002861          821 P--Y-CCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD  857 (873)
Q Consensus       821 ~--g-a~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~  857 (873)
                      .  | +.++.+||||+  ++++|+++ +.++++.+.|++.
T Consensus       310 ~~~Ga~~~a~~SGaGP--tv~al~~~-~~~~~v~~~l~~~  346 (416)
T 1fi4_A          310 QFYGETIVAYTFDAGP--NAVLYYLA-ENESKLFAFIYKL  346 (416)
T ss_dssp             HHHTSCCEEEEECSSS--CEEEEEEG-GGHHHHHHHHHHH
T ss_pred             HhcCCceEEEEecCCC--cEEEEECH-HHHHHHHHHHHHh
Confidence            2  6 67788999998  89999975 4567777777654

>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}

Probab=99.77  E-value=7.3e-17  Score=181.41  Aligned_cols=262  Identities=16%  Similarity=0.120  Sum_probs=164.6

Q ss_pred             CCeEEEeeee---cccccceeEEEEEecC-CcEEEEeCCCCceeeecCCCCCCCCCCCChhHHHHHHHHHhhhhhhcccc
Q 002861          554 AGCVLNVAIS---LESSLPIGTIIETTKM-SGVLISDDAGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIE  629 (873)
Q Consensus       554 gG~Vl~~AI~---l~~~~pi~~~v~~~~~-~~i~i~~~~~~~~~~~~l~~l~~p~~~~~~~~~~kaal~~~~~~~~~~~~  629 (873)
                      +-..|++|++   +|.+    ++|+..++ ..+.+..+. .  ..        +.   ...++++.++..+..   ....
T Consensus        33 ~~dslglaL~~~~l~~~----~~v~~~~~~~~~~i~i~g-~--~~--------~~---~~~~~v~~~~~~~~~---~~~~   91 (380)
T 2hke_A           33 TNDSFSITLSASPFRSK----TSVELRDDIETDTLRLNG-T--EV--------DV---GKTPRVQSMLLHLRS---TCPE   91 (380)
T ss_dssp             SSCEEEEEBCSSSCCEE----EEEEEESSCSSCEEEETT-E--EE--------CG---GGCHHHHHHHHHHHT---SSCH
T ss_pred             CCCceEEEecCCCCceE----EEEEECCCCCccEEEECC-c--cc--------Cc---hhHHHHHHHHHHHHH---Hhcc
Confidence            4468999999   8987    66765432 223333221 0  00        00   012466666655431   1122


Q ss_pred             ---ccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCChhhhhHhhcccCeeEEe
Q 002861          630 ---SMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTS  706 (873)
Q Consensus       630 ---~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~~G~~Dq~~~~~GG~~~~~  706 (873)
                         ..|++|++.++||.++|||||||.++|++.|+++++|.+   ++|+++|...+       |  |++++++||++...
T Consensus        92 ~~~~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~~lA~~g~-------G--sva~s~~GG~v~~~  159 (380)
T 2hke_A           92 ELKNKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVSMLARLGS-------G--SACRSAFGGFVIWN  159 (380)
T ss_dssp             HHHTCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHHHHHHHHC-------G--GGGGGGSSSEEEEE
T ss_pred             cCCCCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHHHHHhhcC-------c--ceeeehhCCeEEEe
Confidence               568999999999999999999999999999999999987   88998887542       2  78899999998754


Q ss_pred             cCCC-CcceeEEEeecCChhhhhhcCcE--EEEEEeC-CcchHHHHHHHHHHHHhhcCHHHHHHHHH-HHHHHHHHHHHH
Q 002861          707 SFPG-IPLRLQVIPLLASPQLILELQQR--LLVVFTG-QVRLAHQVLQKVVTRYLQRDNLLISSIKR-LTELAKNGRDAL  781 (873)
Q Consensus       707 ~~~~-~~~~~~v~pl~~~~~~~~~~~~~--lllv~tg-~tr~t~~~l~~v~~~~~~~~~~~~~~~~~-i~~~~~~~~~AL  781 (873)
                      ...+ ........+++.+..+   .+..  +++++++ .+..+....+++++..    +.+...+++ ....+..+..||
T Consensus       160 ~g~~~~~~~~~~~~l~~~~~~---p~l~~~vlv~~~~~~~~sst~~~r~~~~~~----~~~~~~~~~~~~~~~~~l~~Al  232 (380)
T 2hke_A          160 KGEKPDGSDCVATQFVDETHW---PEIQVMCAVLKGAQKDVSSTKGMQQSLKTS----PLMKKRISETVPERMKIASRAI  232 (380)
T ss_dssp             CCSCTTSTTCEEEEEECTTSC---TTEEEEEEECCCCSCCCCHHHHHHHHHHHC----TTHHHHHHTHHHHHHHHHHHHH
T ss_pred             cCCCCCCCcceEEeccCcccC---CcceEEEEEecCCCCCCCCHHHHHHHHhcC----hhHHHHHHHHHHHHHHHHHHHH
Confidence            3210 1111234555432111   1233  3333433 3445655555443221    111222332 344567799999


Q ss_pred             hccCHHHHHHHHHHHHHHHhh----hCCC--CChHHHHHHHHHHcc-----C-CceEEecCCCccceeEEEeCCcchHHH
Q 002861          782 MNCDVDELGKIMLEAWRLHQE----LDPH--CSNEFVDRLFAFADP-----Y-CCGYKLVGAGGGGFALLLAKDAESATE  849 (873)
Q Consensus       782 ~~gd~~~lg~lm~~~~~~~~~----l~~~--vs~p~l~~l~~~a~~-----g-a~G~klsGAGgGG~v~~l~~~~~~a~~  849 (873)
                      .++|++.|+++|.+++..+..    -.+.  ...|...++++.+.+     | +.++.+||||+  ++++|+++ +.+++
T Consensus       233 ~~~D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~~a~~SGaGP--tv~~l~~~-~~~~~  309 (380)
T 2hke_A          233 KARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAGA--NCFLFVLK-EDLPE  309 (380)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSSS--CEEEEEEG-GGHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcceEEEECCCC--cEEEEECH-HHHHH
Confidence            999999999999754332221    1221  245777777776543     7 77799999998  89999975 46788


Q ss_pred             HHHHHHhcC
Q 002861          850 LRRMLEKDS  858 (873)
Q Consensus       850 i~~~L~~~~  858 (873)
                      +.+.|++.+
T Consensus       310 v~~~l~~~~  318 (380)
T 2hke_A          310 AVAMLMEHF  318 (380)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHhc
Confidence            888888753

>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}

Probab=99.69  E-value=1.1e-15  Score=166.72  Aligned_cols=207  Identities=17%  Similarity=0.091  Sum_probs=141.1

Q ss_pred             cccCEEEEEeeccCCCCCCChHHHHHHHHH----HHHHHHhCCCC-CHHHHHHHHHHHHHHcCCCChhhhhHhhcccCee
Q 002861          629 ESMGLQIRTWANVPRGSGLGTSSILAAAVV----KALLQITDGDQ-SNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIK  703 (873)
Q Consensus       629 ~~~G~~i~i~s~IP~GsGLGSSSAlavA~l----~Al~~~~g~~l-s~~eL~~la~~~E~~~g~~~G~~Dq~~~~~GG~~  703 (873)
                      ...|++|.++++||.++|||||||.++|++    .|+++++|.++ +++||.++|..+       +|  +...++|||+.
T Consensus        89 ~~~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~g-------sG--saa~si~GG~v  159 (323)
T 3lto_A           89 YVGGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLG-------SG--SSCRSFYAPWA  159 (323)
T ss_dssp             CCCCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTT-------CG--GGGGGGSCSEE
T ss_pred             CCCCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh-------CC--CcchhhhCCEE
Confidence            456999999999999999999999999999    99999999999 999999998533       23  68899999998


Q ss_pred             EEecCCCCcceeEEEeec-CChhhhhhcCcEEEEEE--e-CCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 002861          704 FTSSFPGIPLRLQVIPLL-ASPQLILELQQRLLVVF--T-GQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRD  779 (873)
Q Consensus       704 ~~~~~~~~~~~~~v~pl~-~~~~~~~~~~~~lllv~--t-g~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~  779 (873)
                      .+..  +     ..+++. ..+      +..++++.  . ....+|.+..+.+ +.    .+.....++.....+..+..
T Consensus       160 ~~~~--g-----~~~~l~~~~~------~l~~~v~vi~~~~~~vsT~~~~~~l-~~----~~~~~~~~~~~~~~~~~l~~  221 (323)
T 3lto_A          160 LWTG--D-----KVSAIDLPYK------DLLHQVIVISSQEKEIPSRVAHKLV-KT----SPFYETRSERAEANLKLLLN  221 (323)
T ss_dssp             EEET--T-----EEEECCCSCC------SCEEEEEECCCCTTCCCHHHHHHHG-GG----STTTTTHHHHHHHHHHHHHH
T ss_pred             EEec--C-----cEEEccCCCC------CCeEEEEEECCCCCCCCCHHHHhhc-cc----ChhHHHHHHHhHHHHHHHHH
Confidence            7643  2     123332 111      23343332  2 3345677766552 21    11111122333455678999


Q ss_pred             HHhccCHHHHHHHHHHHHHH----HhhhCCC--CChHHHHHHHHHH---c--cCCceEEecCCCccceeEEEeCCcchHH
Q 002861          780 ALMNCDVDELGKIMLEAWRL----HQELDPH--CSNEFVDRLFAFA---D--PYCCGYKLVGAGGGGFALLLAKDAESAT  848 (873)
Q Consensus       780 AL~~gd~~~lg~lm~~~~~~----~~~l~~~--vs~p~l~~l~~~a---~--~ga~G~klsGAGgGG~v~~l~~~~~~a~  848 (873)
                      ||.++|++.+++++......    .+.-.|.  ...|...++++.+   +  .|+.++.++|||+  ++++++++ +..+
T Consensus       222 AL~~gD~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAGP--nv~~l~~~-~~~~  298 (323)
T 3lto_A          222 AFENKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAGP--NVHLLYRS-DQTD  298 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSSS--CEEEEECG-GGHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCCC--CeEEEEec-ccHH
Confidence            99999999999987644322    2221111  2346666665555   3  3789999999999  67888875 6788


Q ss_pred             HHHHHHHhcCCCceEEE
Q 002861          849 ELRRMLEKDSNFNSEVY  865 (873)
Q Consensus       849 ~i~~~L~~~~~~~v~v~  865 (873)
                      ++.+.|++.+.-..+|.
T Consensus       299 ~v~~~l~~~~~~~~~~~  315 (323)
T 3lto_A          299 LARQFKSDHLVGNYDVL  315 (323)
T ss_dssp             HHHHHHHHHTTTTSEEC
T ss_pred             HHHHHHHHHhHhHHHHh
Confidence            99999987754444443

>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A

Probab=99.59  E-value=3e-14  Score=158.43  Aligned_cols=204  Identities=15%  Similarity=0.141  Sum_probs=138.7

Q ss_pred             cCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCChhhhhHhhcccCeeEEecCC-
Q 002861          631 MGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFP-  709 (873)
Q Consensus       631 ~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~~G~~Dq~~~~~GG~~~~~~~~-  709 (873)
                      .|++|.++++||.++|||||||.++|++.|++++++.   +++|.++|..++       |  +.+.++|||++.....+ 
T Consensus       122 ~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~s-------G--s~~~s~~GG~v~w~~~~~  189 (414)
T 3f0n_A          122 YKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGS-------G--SACRSLYGGFVEWQMGEQ  189 (414)
T ss_dssp             SCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHC-------G--GGGGGGSSSEEEECCCSC
T ss_pred             CcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhC-------C--CcchHhhCCEEEEEeccC
Confidence            6899999999999999999999999999999999998   467888886542       2  67899999999876542 


Q ss_pred             --CCcceeEEEeecCChhhhhhcCcEEEEEEe---CCcchHHHHHHHHHHHHhhcCHHHHHHHHH-HHHHHHHHHHHHhc
Q 002861          710 --GIPLRLQVIPLLASPQLILELQQRLLVVFT---GQVRLAHQVLQKVVTRYLQRDNLLISSIKR-LTELAKNGRDALMN  783 (873)
Q Consensus       710 --~~~~~~~v~pl~~~~~~~~~~~~~lllv~t---g~tr~t~~~l~~v~~~~~~~~~~~~~~~~~-i~~~~~~~~~AL~~  783 (873)
                        +..  ....+++.+..+   .+.+++++..   ..+.++++.++.++..    ...+...+++ ....+..+..||.+
T Consensus       190 ~d~~d--s~a~~i~~~~~w---p~L~ivvlv~~~~~K~vsST~~mr~~l~t----s~~~~~~v~~~~~~~~~~l~~AL~~  260 (414)
T 3f0n_A          190 ADGKD--SIARQIAPEWHW---PQLRILILVVSADKKQTGSTVGMQTSVET----STLLKFRAESVVPERMKEMTRCIQE  260 (414)
T ss_dssp             TTCTT--CCEEEEECTTSC---TTEEEEEEEESCCC-CCCHHHHHHHHHHH----CHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred             CCCCc--eEEEEcccccCC---CCceEEEEEeCccccCCCchHHHHhhccc----CccHHHHHHHHHHHHHHHHHHHHHc
Confidence              211  122344322111   1345554443   3344566666654432    2233344555 45667789999999


Q ss_pred             cCHHHHHHHHHHH----HHHHhhhCC--CCChHHHHHHHHHHcc------CCceEEecCCCccceeEEEeCCcchHHHHH
Q 002861          784 CDVDELGKIMLEA----WRLHQELDP--HCSNEFVDRLFAFADP------YCCGYKLVGAGGGGFALLLAKDAESATELR  851 (873)
Q Consensus       784 gd~~~lg~lm~~~----~~~~~~l~~--~vs~p~l~~l~~~a~~------ga~G~klsGAGgGG~v~~l~~~~~~a~~i~  851 (873)
                      +|++.|++++..+    |+..+.-.|  ....|...++++.+.+      |+.++.++|||+  ++++++++ +..+++.
T Consensus       261 gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsdAGP--nv~vl~~~-~~~~~v~  337 (414)
T 3f0n_A          261 QDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAGP--NAVIFTLE-DTVAEFV  337 (414)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSSS--CEEEEEEH-HHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEECCCC--CEEEEEec-ccHHHHH
Confidence            9999999986644    222222111  1245776666665543      678999999999  77888874 6788899


Q ss_pred             HHHHhcC
Q 002861          852 RMLEKDS  858 (873)
Q Consensus       852 ~~L~~~~  858 (873)
                      +.|++.+
T Consensus       338 ~~l~~~f  344 (414)
T 3f0n_A          338 AAVRHSF  344 (414)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHhc
Confidence            9988653

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.39  E-value=3.5e-13  Score=153.59  Aligned_cols=228  Identities=14%  Similarity=0.114  Sum_probs=146.0

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      +.||+++..|+..++.    .++++|++..+++.+..+.+|++.+|+++         +|..|.+||..++-    ....
T Consensus       132 ~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~g---------~v~~~~ekp~~~~~----~~~~  198 (420)
T 3brk_X          132 LAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKD---------EIIDFIEKPADPPG----IPGN  198 (420)
T ss_dssp             EESSCEECBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSEEEEECTTS---------BEEEEEESCSSCCC----BTTB
T ss_pred             ecccEEEchHHHHHHHHHHHcCCeEEEEEeecCccccCcccEEEECCCC---------cEEEeEeCCCcccc----cccc
Confidence            3589999888877765    67899999999877778899999999877         79999999975420    1123


Q ss_pred             CCccceeeceeeecchHHHHHHhhhcC----CchhhhhhhccccchhhhHHHHhhc------c-cccccccccCCCc--h
Q 002861           77 DGRALLDTGIIAVRGKAWEELVMLSCS----CPPMVSELLKSGKEMSLYEDLVAAW------V-PAKHDWLMLRPLG--K  143 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~~ll~~~~~----~~d~g~d~~~~~~~~~~y~df~~~~------~-~~~~~Y~~~~pvg--d  143 (873)
                      ++..+..+|+|+|+.+.+.+++.....    ..++..|++  +..+....-+.+.+      + +..+.||.+  ++  +
T Consensus       199 ~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~l--~~li~~g~v~~~~~~~~~~~~~~~~~~~~~d--I~t~~  274 (420)
T 3brk_X          199 EGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDII--PYIVEHGKAVAHRFADSCVRSDFEHEPYWRD--VGTID  274 (420)
T ss_dssp             TTEEEEEEEEEEEEHHHHHHHHTSSCCC----------CT--THHHHHSCEEEEEHHHHBCCCTTCSSCCEEC--CCSHH
T ss_pred             ccceEEeeeeEEEeHHHHHHHHHHhcccCCccccchHHHH--HHHhhhCcEEEEEeccccccccccCCCEEEE--CCCHH
Confidence            456799999999999988777753211    124444555  22121100000000      0 111458988  76  5


Q ss_pred             hHHhh----hhcCcceEE------------EecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeE
Q 002861          144 ELVSK----LGKQRMFSY------------CAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVV  207 (873)
Q Consensus       144 ~~~~~----l~~~~i~~~------------~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V  207 (873)
                      .|+.+    +...+.+.+            ..|++.+. -+              ..+....+.++.+.. +|++.++.|
T Consensus       275 d~~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~-~~--------------~~~~~~~i~~~~ig~-~~~I~~~~i  338 (420)
T 3brk_X          275 AYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFV-HD--------------DEDRRGSAVSSVVSG-DCIISGAAL  338 (420)
T ss_dssp             HHHHHHHHTTSSSCSSCTTCCSSCCCCCCCCCCCCEEE-CB--------------CSSCBCEEESCEECS-SCEEESCEE
T ss_pred             HHHHHHHHHhCCCchhhcCCCCCceeeccccCCCcEEe-cc--------------cccCCcEecCCEECC-CCEEcCCEE
Confidence            56655    222211110            11121111 00              001122233555554 444478889


Q ss_pred             EeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeeeee
Q 002861          208 LSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEV  271 (873)
Q Consensus       208 ~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~~v  271 (873)
                      .+|+|+++|.|++++.|++|+|++++.||.+|.|.+++|.++          +.|++|+++..-
T Consensus       339 ~~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~----------~~i~~~~~i~~~  392 (420)
T 3brk_X          339 NRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHG----------VVIPEGLIVGED  392 (420)
T ss_dssp             ESCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEECTT----------CEECTTCEESSC
T ss_pred             eCcEEcCCCEECCCCEEcceEEcCCCEECCCCEEeceEECCC----------CEECCCCEEeCC
Confidence            999999999999999999999999999999999999999887          999999866433

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.29  E-value=2.5e-12  Score=147.84  Aligned_cols=229  Identities=15%  Similarity=0.159  Sum_probs=141.7

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhc---Cc
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKN---HA   73 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~---~a   73 (873)
                      +.||+++.+|+..++.    .++++|++..|++.+..+.+|++.+|+++         +|..|.+||..++....   ..
T Consensus       142 ~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~---------~v~~~~ekp~~~~~~~~~~~~~  212 (451)
T 1yp2_A          142 LAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG---------RIIEFAEKPQGEQLQAMKVDTT  212 (451)
T ss_dssp             ECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECTTS---------BEEEEEESCCHHHHHHTCCCGG
T ss_pred             ecCcEEEcCCHHHHHHHHHHcCCcEEEEEEEcChhhcccCCEEEECCCC---------CEEEEEECCCchhhcccccccc
Confidence            4699999888877775    67899999999887778899999999776         79999999987642210   00


Q ss_pred             -c------cCCCccceeeceeeecchHHHHHHhhhc-CCchhhhhhhccccchhhhHHHHhhccc-ccccccccCCCc--
Q 002861           74 -I------LDDGRALLDTGIIAVRGKAWEELVMLSC-SCPPMVSELLKSGKEMSLYEDLVAAWVP-AKHDWLMLRPLG--  142 (873)
Q Consensus        74 -~------~~~~~~l~~~Gi~~f~~~~~~~ll~~~~-~~~d~g~d~~~~~~~~~~y~df~~~~~~-~~~~Y~~~~pvg--  142 (873)
                       +      ......++++|+|+|+.+++.+++.... ...+++.+++  +..+..    ...... ..+.||.+  +|  
T Consensus       213 ~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~l--~~~i~~----g~~v~~~~~~~~w~d--igt~  284 (451)
T 1yp2_A          213 ILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI--PGATSL----GMRVQAYLYDGYWED--IGTI  284 (451)
T ss_dssp             GGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHH--HHHHHT----TCCEEEEECCSCCEE--CSSH
T ss_pred             ccccccccccCCcceEEeeEEEEcHHHHHHHHHhhcccccchHhhHH--HHHHhc----CCceEEEEeCCEEEE--CCCH
Confidence             0      0113468899999999999888776431 1233444443  111110    000111 22458988  76  


Q ss_pred             hhHHhh---hhcCcceEEEecCceeEEe----cCcHHHHhhhccCCccccccceeeecCCCcccccccceeEEeeeecCC
Q 002861          143 KELVSK---LGKQRMFSYCAYELLFLHF----GTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHG  215 (873)
Q Consensus       143 d~~~~~---l~~~~i~~~~~p~a~F~h~----gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~  215 (873)
                      +.|+++   +....     .++..++|-    ++..     .......+ ....+.++.+.. +|.+.++.|.+|+|+.+
T Consensus       285 ~~l~~a~~~l~~~~-----~~~~~~~~~~~~i~~~~-----~i~~~~~i-~~~~I~~~~Ig~-~~~I~~~~i~~~~Ig~~  352 (451)
T 1yp2_A          285 EAFYNANLGITKKP-----VPDFSFYDRSAPIYTQP-----RYLPPSKM-LDADVTDSVIGE-GCVIKNCKIHHSVVGLR  352 (451)
T ss_dssp             HHHHHHHHGGGCSS-----SCSSCSCCSSSCCCCCC-----CCCCCEEE-EEEEEEEEEECT-TCEEEEEEEESCEECTT
T ss_pred             HHHHHHHHHHhccc-----ccchhccCCCCeeccCC-----ccCCCeEE-cceEEeCeEECC-CCEEcceEEeccEECCC
Confidence            566665   11110     011112110    0100     00000000 001122344443 34444466778999999


Q ss_pred             ceeCCCcEEEEceeCCC-------------------eEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          216 VSIGEDSLIYDSNISSG-------------------IQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       216 v~v~~~s~Ve~s~l~~~-------------------v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      |.|++++.|++|++.++                   +.||.+|.|.+++|.++          +.|.+|+++
T Consensus       353 ~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~----------~~IG~~~~i  414 (451)
T 1yp2_A          353 SCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKN----------ARIGDNVKI  414 (451)
T ss_dssp             CEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTT----------CEECTTCEE
T ss_pred             CEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCC----------cEECCCCEE
Confidence            99999999999999888                   89999999999998877          888888755

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=98.85  E-value=5.6e-10  Score=125.09  Aligned_cols=69  Identities=9%  Similarity=0.041  Sum_probs=49.3

Q ss_pred             CCeeecc--CCCcCcC-CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCc
Q 002861            3 GDVLPCF--DASTMIL-PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGR   79 (873)
Q Consensus         3 gD~i~~~--d~~~~~~-~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~   79 (873)
                      |||+|+|  |+++|.. -+  +|+.+    .+.++.+||..+|..+++       +| .|++||+.++          ..
T Consensus        18 ~dhiy~m~~~l~~i~~~h~--~tl~g----~~~~~~~Gv~~ld~a~~g-------~I-~F~ekPk~~~----------~~   73 (374)
T 2iu8_A           18 GSHMSQSTYSLEQLADFLK--VEFQG----NGATLLSGVEEIEEAKTA-------HI-TFLDNEKYAK----------HL   73 (374)
T ss_dssp             ---CCSCCEEHHHHHHHTT--CEEES----CTTCEECEECCTTTCCTT-------EE-EECCSSSTHH----------HH
T ss_pred             ccccccCcCcHHHHHHhhC--CEEEC----CCcceEEEEeccccCCCC-------eE-EEEeCchhhh----------hh
Confidence            8999999  8888877 33  46654    346778999999965432       46 9999998653          24


Q ss_pred             cceeeceeeecchHHH
Q 002861           80 ALLDTGIIAVRGKAWE   95 (873)
Q Consensus        80 ~l~~~Gi~~f~~~~~~   95 (873)
                      .+++||+|+|+++.+.
T Consensus        74 ~~~~aGiyI~~~~~l~   89 (374)
T 2iu8_A           74 KSSEAGAIIISRTQFQ   89 (374)
T ss_dssp             HTCCCSEEEEEHHHHH
T ss_pred             hcCCcEEEEeChhHhh
Confidence            5789999999988764

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=98.40  E-value=2.6e-07  Score=106.26  Aligned_cols=80  Identities=15%  Similarity=0.206  Sum_probs=57.1

Q ss_pred             CCCe--eeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCccc
Q 002861            2 TGDV--LPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAIL   75 (873)
Q Consensus         2 ~gD~--i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~   75 (873)
                      .||+  +...++..++.    .++++++.+.+.+  ..+.+|++..|+++         +|..|.+||...+       .
T Consensus       109 ~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~--~~~~~g~v~~d~~g---------~v~~~~ek~~~~~-------~  170 (468)
T 1hm9_A          109 AGDTPLITGESLKNLIDFHINHKNVATILTAETD--NPFGYGRIVRNDNA---------EVLRIVEQKDATD-------F  170 (468)
T ss_dssp             ETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECS--CCTTSCEEEECTTC---------CEEEEECTTTCCT-------T
T ss_pred             eCCccccCHHHHHHHHHHHHhcCCcEEEEEeccC--CCCceeEEEECCCC---------CEEEEEECCCCCh-------H
Confidence            4566  44455555544    5788999888764  35679999999877         7999999985321       0


Q ss_pred             CCCccceeeceeeecchHHHHHHh
Q 002861           76 DDGRALLDTGIIAVRGKAWEELVM   99 (873)
Q Consensus        76 ~~~~~l~~~Gi~~f~~~~~~~ll~   99 (873)
                      .+...+..+|+|+|+.+.+.+++.
T Consensus       171 ~~~~~~~~~Giy~f~~~~l~~~l~  194 (468)
T 1hm9_A          171 EKQIKEINTGTYVFDNERLFEALK  194 (468)
T ss_dssp             GGGCCEEEEEEEEEEHHHHHHHHT
T ss_pred             HhcCeEEEEEEEEEEHHHHHHHHH
Confidence            113458899999999998877765

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=98.33  E-value=9.2e-07  Score=101.31  Aligned_cols=65  Identities=23%  Similarity=0.393  Sum_probs=48.0

Q ss_pred             CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccceeeceeeecchHHHH
Q 002861           17 PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE   96 (873)
Q Consensus        17 ~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~   96 (873)
                      .++++++.+.+..  ....+|++..| ++         +|..|.+||...+       ..+...+..+|+|+|+.+.+.+
T Consensus       125 ~~~~~~~~~~~~~--~~~~~g~v~~~-~g---------~v~~~~ek~~~~~-------~~~~~~~~~~Giy~~~~~~l~~  185 (459)
T 4fce_A          125 PEGGIGLLTVKLD--NPSGYGRIVRE-NG---------DVVGIVEHKDASD-------AQREINEINTGILVANGRDLKR  185 (459)
T ss_dssp             CTTSEEEEEEECS--CCTTSCEEEEE-TT---------EEEEEECGGGCCT-------TGGGCCEEEEEEEEEEHHHHHH
T ss_pred             hhCCEEEEEEecC--CCCcccEEEeC-CC---------cEEEEEECCCCCh-------HHhhccEEEEEEEEEEHHHHHH
Confidence            4478888887753  34679999887 55         7999999985432       1123457899999999999988


Q ss_pred             HHhh
Q 002861           97 LVML  100 (873)
Q Consensus        97 ll~~  100 (873)
                      ++..
T Consensus       186 ~l~~  189 (459)
T 4fce_A          186 WLSL  189 (459)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            8763

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=98.28  E-value=1.7e-06  Score=97.35  Aligned_cols=211  Identities=15%  Similarity=0.180  Sum_probs=113.2

Q ss_pred             CCCeeec--cCCCcCcCCCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCc
Q 002861            2 TGDVLPC--FDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGR   79 (873)
Q Consensus         2 ~gD~i~~--~d~~~~~~~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~   79 (873)
                      .||+++.  .++..++. .++.++++.|++-  ...+|+++.++++         +|..|.+||..+           ..
T Consensus        97 ~~D~~~~~~~~~~~l~~-~~~~~i~~~~~~~--~~~~~~v~~~~~g---------~v~~~~ek~~~~-----------~~  153 (401)
T 2ggo_A           97 YGDLFFSNEKEICNIIT-LKENAIIGVKVSN--PKDYGVLVLDNQN---------NLSKIIEKPEIP-----------PS  153 (401)
T ss_dssp             ETTEEESCSHHHHHHTT-CSSEEEEEEECSC--CSSSCEEEECTTS---------SEEEEECSCSSC-----------SC
T ss_pred             eCccccccHHHHHHHHH-hcCCEEEEEEcCC--CcceeEEEECCCC---------eEEEEEECCCCC-----------CC
Confidence            5788765  45555554 5788888888643  4568999988776         789999999543           34


Q ss_pred             cceeeceeeecchHHHHHHhhhcCCchhhhhhhccccchhhhHHHHhhc--c----c-ccccccccCCCc--hhHHhh--
Q 002861           80 ALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAW--V----P-AKHDWLMLRPLG--KELVSK--  148 (873)
Q Consensus        80 ~l~~~Gi~~f~~~~~~~ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~--~----~-~~~~Y~~~~pvg--d~~~~~--  148 (873)
                      .+..+|+|+|+.+++.. +.... ...        ..++++ .|++..+  +    . ..+.||.|  ++  +.|..+  
T Consensus       154 ~~~~~Giy~~~~~~~~~-l~~~~-~~~--------~~~~~~-~~~~~~~~~g~~v~~~~~~~~~~d--I~t~edl~~a~~  220 (401)
T 2ggo_A          154 NLINAGIYKLNSDIFTY-LDKIS-ISE--------RGELEL-TDAINLMAKDHRVKVIEYEGYWMD--IGKPWNIIDVNK  220 (401)
T ss_dssp             SEEEEEEEEEETHHHHH-HHHSC-CCS--------SSCBCH-HHHHHHHHHHSCEEEEECCSCEEE--CCSHHHHHHHHH
T ss_pred             cEEEEEEEEEcHHHHHH-hhhcC-cCC--------CCceEH-HHHHHHHHCCCcEEEEEecceEEc--CCCHHHHHHHHH
Confidence            58899999999998754 43211 000        001111 1322222  1    1 22347877  64  334333  


Q ss_pred             --hhcC--cceEEEecCceeE----EecCcHHHHhhhccCCccccccceee-ecCCCcccccccceeEE-eeeecCCcee
Q 002861          149 --LGKQ--RMFSYCAYELLFL----HFGTSSEVLDHLSGDVSGLVGRRHLC-SIPATTVSDIAASAVVL-SSKIAHGVSI  218 (873)
Q Consensus       149 --l~~~--~i~~~~~p~a~F~----h~gt~~e~l~~l~~~~~~l~~~~~~~-~~~~~~~~~i~~~~~V~-~Svl~~~v~v  218 (873)
                        +...  |.......++-.+    ++|.           ...++....+. +..+..++.|..++.|. +++|+.+|.|
T Consensus       221 ~l~~~~~~~~~~~~i~~~~~i~~~~~ig~-----------~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~i  289 (401)
T 2ggo_A          221 WALDNLVFSQNLGNVEDNVKIKGKVIIEE-----------DAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKI  289 (401)
T ss_dssp             HHHHHTCCCEECSEECSSCEEESCEEECT-----------TCEECTTCEEESSEEECTTCEECSSCEECTTEEECSSCEE
T ss_pred             HHHHhcccccccceeCCCCEEcCCeEEcC-----------CCEECCCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEE
Confidence              1211  1110011111111    1111           00011011010 11122222232343332 4777788888


Q ss_pred             CCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeee
Q 002861          219 GEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLW  269 (873)
Q Consensus       219 ~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~  269 (873)
                      ++++.|.+|+|++++.||.+|.|.+++|..+          +.|.+++++.
T Consensus       290 g~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~----------~~Ig~~~~i~  330 (401)
T 2ggo_A          290 GASVEVKESVIMEGSKIPHLSYVGDSVIAED----------VNFGAGTLIA  330 (401)
T ss_dssp             EETCEEESEEECTTCEEEESCEEESCEECTT----------CEECTTCEEC
T ss_pred             CCCCEEecCEEcCCcEECCCceEcceEECCC----------cEECCCcEEc
Confidence            8888888888888888888888887777766          6676666553

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=98.22  E-value=2.1e-07  Score=106.95  Aligned_cols=220  Identities=11%  Similarity=0.019  Sum_probs=115.5

Q ss_pred             eeeccCCCcCcC--CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccce
Q 002861            5 VLPCFDASTMIL--PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALL   82 (873)
Q Consensus         5 ~i~~~d~~~~~~--~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~   82 (873)
                      ++||||+..-..  .++++|++..++|+++|..  +..+|++..  +.    +|.+|.|||..+.-    -..   ..++
T Consensus        97 ~~Yk~d~~~d~~~~~g~~vt~~~~~~pL~~a~~--i~~~d~~~~--~t----~V~~~~~kpd~~~~----~~l---~~l~  161 (496)
T 3c8v_A           97 ALYKSDIRGDELKRKGQHFVCDGKMIPLHDDEV--ITIKDSFLN--KT----LVHSNSHDPESPEE----FTI---RNTV  161 (496)
T ss_dssp             EEESCEEECTTCCCTTCEEEETTEEEECSSCCE--EEEESCEEE--SC----EEESCCCCTTCTTE----EEE---ESCE
T ss_pred             eeeeehhhHHHHhhcCCEEEEEecccchhHhhh--HHhhhhcCC--ce----EEeccccCCCCccc----cch---HHHH
Confidence            589999876333  8899999999999999887  888887641  11    68889999988750    001   1123


Q ss_pred             ee-----------ceee--ecc---hHHHHHHhhhcCCchhhhhhhcc---ccch--------h-hh---HHHHhhccc-
Q 002861           83 DT-----------GIIA--VRG---KAWEELVMLSCSCPPMVSELLKS---GKEM--------S-LY---EDLVAAWVP-  130 (873)
Q Consensus        83 ~~-----------Gi~~--f~~---~~~~~ll~~~~~~~d~g~d~~~~---~~~~--------~-~y---~df~~~~~~-  130 (873)
                      +|           |+|+  |++   ..+.+.|..++ .--+++++.+.   |..+        . .|   ..++..+.. 
T Consensus       162 ~~h~~~~~g~~~~~~~ig~~~ti~L~~l~d~li~~~-~~~~~g~i~~~~~~pg~~~i~~~~~lnf~Y~f~~~~L~~~l~~  240 (496)
T 3c8v_A          162 AMPYANIHGSLTEGSFIGSFATVDLSTIHNSVVRYF-SYVQTGELVGKCVEPGQIWIKSGDELEFHYSFDKAILDKYISQ  240 (496)
T ss_dssp             ECTTCEEESCCEESCEECTTCEEESCEEESCEECTT-CEEESSEEESCEECTTEEEEECTTSEEEEEECCHHHHTTTCBC
T ss_pred             HHHHHhhcCCcccceEecccceeeHHHHHHHHHHHH-hhhcCCceEEeeecCCceecccccccceEEEcCHHHHHHHHhh
Confidence            33           7777  666   33222222111 01123333322   1111        0 00   011111110 


Q ss_pred             ----ccccccccC--CCchhHHhhhhcCcc-eEEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCccccccc
Q 002861          131 ----AKHDWLMLR--PLGKELVSKLGKQRM-FSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAA  203 (873)
Q Consensus       131 ----~~~~Y~~~~--pvgd~~~~~l~~~~i-~~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~  203 (873)
                          ....+|.|.  ...+.+|+.+..... .....+++.+++-+.             .+     .-+..+..++.|..
T Consensus       241 ~~~~n~~g~~~Dll~~~~~d~~~i~~~~~~~~~~~I~~~a~I~p~a-------------~i-----~g~v~IG~~~~I~~  302 (496)
T 3c8v_A          241 EAGSCPTGVLMEFVEVRQEDFEEVFASGHMASGAGSASGASVSGYA-------------VI-----KGDTVIGENVLVSQ  302 (496)
T ss_dssp             CTTSCCBSHHHHHHHTTTHHHHHHHHC--------CCTTCEECTTS-------------EE-----ESSCEECTTCEECT
T ss_pred             ccCccccceeeehhccchHHHHHHhhccccccCcccCCCcEECCCc-------------EE-----eCCeEECCCCEECC
Confidence                001122220  001234443322110 012223344443111             00     00112222234555


Q ss_pred             ceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          204 SAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       204 ~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      ++.|-+++|+.+|.|+++++|.+|+|++++.||.+|+|.++.|..+          +.|.+++.+
T Consensus       303 ~a~I~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd~----------v~IG~~a~I  357 (496)
T 3c8v_A          303 RAYLDNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDM----------IFTGFNSFL  357 (496)
T ss_dssp             TCEEEEEEECTTCEECTTCEEEEEEEEESCEECTTCEEESEEEEET----------CEECTTCEE
T ss_pred             CcEEeceEecCCCEECCCceEeceEeCCCCEECCCcEEcCceECCC----------cEECCCCEE
Confidence            6667788888888888888888888888888888888888888776          777777654

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=98.19  E-value=2e-06  Score=98.51  Aligned_cols=78  Identities=18%  Similarity=0.350  Sum_probs=52.4

Q ss_pred             CCe--eeccCCCcCcC--CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCC
Q 002861            3 GDV--LPCFDASTMIL--PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDG   78 (873)
Q Consensus         3 gD~--i~~~d~~~~~~--~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~   78 (873)
                      ||+  +...++..++.  .++++++++.+.+-  ...+|++..| ++         +|..|.+||...+-.       +.
T Consensus       104 ~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~--~~~~g~v~~~-~g---------~v~~~~ek~~~~~~~-------~~  164 (456)
T 2v0h_A          104 GDAPLITKETLEKLIEAKPENGIALLTVNLDN--PTGYGRIIRE-NG---------NVVAIVEQKDANAEQ-------LN  164 (456)
T ss_dssp             TTCTTCCHHHHHHHHHHCCTTSEEEEEEECSS--CTTSCEEEEE-TT---------EEEEEECTTTCCHHH-------HT
T ss_pred             CCcceeCHHHHHHHHHHHhcCCEEEEEeecCC--CCccceEEEc-CC---------cEEEEEECCCCChhH-------hc
Confidence            555  33334444433  23788888877643  4569998887 55         789999998742211       13


Q ss_pred             ccceeeceeeecchHHHHHHh
Q 002861           79 RALLDTGIIAVRGKAWEELVM   99 (873)
Q Consensus        79 ~~l~~~Gi~~f~~~~~~~ll~   99 (873)
                      ..+..+|+|+|+.+.+.+++.
T Consensus       165 ~~~~~~Giy~~~~~~l~~~l~  185 (456)
T 2v0h_A          165 IKEVNTGVMVSDGASFKKWLA  185 (456)
T ss_dssp             CCEEEEEEEEEEHHHHHHHHT
T ss_pred             CcEEEEEEEEEEHHHHHHHHH
Confidence            458899999999998877775

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=98.11  E-value=5.4e-06  Score=96.33  Aligned_cols=67  Identities=15%  Similarity=0.141  Sum_probs=54.0

Q ss_pred             CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccceeeceeeecchHHHH
Q 002861           17 PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE   96 (873)
Q Consensus        17 ~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~   96 (873)
                      .++++|+++.++  +..+.+|+++.|+++         +|..|.|||..++-.       ....++.+|+|+|+.+.+.+
T Consensus       139 ~~~~~ti~~~~~--~dp~~yG~i~~~~~g---------~v~~ivEk~~~~~~~-------~~i~~in~Giy~f~~~~l~~  200 (501)
T 3st8_A          139 VSAAVTVLTTTL--DDPFGYGRILRTQDH---------EVMAIVEQTDATPSQ-------REIREVNAGVYAFDIAALRS  200 (501)
T ss_dssp             TTCSEEEEEEEC--SCCTTSCEEEECTTC---------CEEEEECGGGCCHHH-------HHCCEEEEEEEEEEHHHHHH
T ss_pred             ccccceEeeecc--CCchhccccccccce---------eEEeeccccCCChhh-------ccceeeeceeeeecchhHHH
Confidence            689999999876  467899999999998         899999998753211       12347899999999999999


Q ss_pred             HHhhh
Q 002861           97 LVMLS  101 (873)
Q Consensus        97 ll~~~  101 (873)
                      ++...
T Consensus       201 ~l~~l  205 (501)
T 3st8_A          201 ALSRL  205 (501)
T ss_dssp             HHTTC
T ss_pred             hhhhh
Confidence            88743

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=96.46  E-value=0.0074  Score=68.05  Aligned_cols=59  Identities=15%  Similarity=0.132  Sum_probs=51.7

Q ss_pred             ceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeeeeeee
Q 002861          204 SAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPL  273 (873)
Q Consensus       204 ~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~~v~l  273 (873)
                      ++.|.++.|+++|.| +++.|++|+|+++|.||.+|.|.+++|..+          +.|.+|++|..+-+
T Consensus       319 ~~~i~~~~ig~~~~I-~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~----------~~i~~~~~i~~~~i  377 (420)
T 3brk_X          319 RGSAVSSVVSGDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPS----------VKIGRHAQLSNVVI  377 (420)
T ss_dssp             BCEEESCEECSSCEE-ESCEEESCEECTTCEECTTCEEEEEEECTT----------CEECTTCEEEEEEE
T ss_pred             CcEecCCEECCCCEE-cCCEEeCcEEcCCCEECCCCEEcceEEcCC----------CEECCCCEEeceEE
Confidence            556678999999999 899999999999999999999999999877          88999887755444

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=96.33  E-value=0.0059  Score=62.16  Aligned_cols=40  Identities=18%  Similarity=0.363  Sum_probs=21.0

Q ss_pred             eeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861          210 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      ++|+.+|.|+.+++|.+++|++++.||.+++|.++.|..+
T Consensus       130 v~Ig~~v~IG~~a~I~~~~Ig~~~~Igags~V~~~~i~~~  169 (213)
T 3kwd_A          130 AYIGDGCFIGFRSTVFNARVGAGCVVMMHVLIQDVEIPPG  169 (213)
T ss_dssp             EEECTTCEECTTCEEEEEEECTTCEECSSCEEESCEECTT
T ss_pred             CEECCCCEECCCCEEeCcEECCCCEEcCCCEECCcEeCCC
Confidence            4555555555555555555555555555555554444443

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}

Probab=96.03  E-value=0.0015  Score=70.49  Aligned_cols=88  Identities=7%  Similarity=0.119  Sum_probs=59.4

Q ss_pred             CCCCeeeccC-CCcCcC-------CCCceEEEEEecCc---cc-cccceEEEeCCCCCcccccccccccceeecCCHHHH
Q 002861            1 MTGDVLPCFD-ASTMIL-------PEDASCIITVPITL---DI-ASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDEL   68 (873)
Q Consensus         1 ~~gD~i~~~d-~~~~~~-------~~a~vtv~a~p~~~---~~-a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l   68 (873)
                      +.||+++..| +.+|+.       +++++|+++.+++-   .+ +.++||+++|+++         +|..|.|||..++-
T Consensus       121 ~~gD~l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~~~G~v~~d~~g---------~v~~i~Ekp~~~~~  191 (303)
T 3pnn_A          121 INADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQVDEKH---------LLTGVVERTGIERT  191 (303)
T ss_dssp             EESSCBCCHHHHHHHHHHHHTTTTCSSEEEEEEEEGGGSCBTTBCEEEEEEEECTTS---------BEEEEEEEEEEEEE
T ss_pred             EECCeecCHHHHHHHHHHHHHhccccCceEEEEEECCCccCccCceeeeeEeeCCCC---------cEEEEEECCCCccc
Confidence            3689999886 665654       35889999998742   22 2235899999887         89999999975310


Q ss_pred             hh-------cCc-ccCCCccceeeceeeecchHHHHH
Q 002861           69 AK-------NHA-ILDDGRALLDTGIIAVRGKAWEEL   97 (873)
Q Consensus        69 ~~-------~~a-~~~~~~~l~~~Gi~~f~~~~~~~l   97 (873)
                      .+       .+. ..-+...+++||+|+|+.+.+..+
T Consensus       192 ~~~~~~~~~~g~~~~~~~~~~i~~GiY~f~~~~~~~l  228 (303)
T 3pnn_A          192 DGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDYS  228 (303)
T ss_dssp             TTEEEEECTTSCEEEECTTCEEEEEEEEECTHHHHHH
T ss_pred             cccccccccccccccCCCCCEEEEEEEEECHHHHHHH
Confidence            00       000 000245689999999999986544

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}

Probab=95.94  E-value=0.0027  Score=68.57  Aligned_cols=85  Identities=13%  Similarity=0.142  Sum_probs=61.5

Q ss_pred             CCCCeee-ccC-CCcCcC-------CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhc
Q 002861            1 MTGDVLP-CFD-ASTMIL-------PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKN   71 (873)
Q Consensus         1 ~~gD~i~-~~d-~~~~~~-------~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~   71 (873)
                      +.||+++ ..+ +.+++.       .++++|+...|...  .+.+|++.+|+++         +|..|.+||..++-++ 
T Consensus       110 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~--~~~~g~i~~d~~~---------~V~~~~Ekp~~~~~~~-  177 (308)
T 2qh5_A          110 TPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKP--NTEFGYIESPNGL---------DVKRFIEKPSLDKAIE-  177 (308)
T ss_dssp             EESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSSC--CTTSEEEECSSSS---------BCSEEEESCCHHHHHH-
T ss_pred             EcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCCC--CCCceEEEECCCC---------EEEEEEECCChHHHHH-
Confidence            3589887 566 555543       46788888887644  4779999988666         7999999998754221 


Q ss_pred             CcccCCCccceeeceeeecchHHHHHHh
Q 002861           72 HAILDDGRALLDTGIIAVRGKAWEELVM   99 (873)
Q Consensus        72 ~a~~~~~~~l~~~Gi~~f~~~~~~~ll~   99 (873)
                        ...++..+..+|+|+|+.+.+.+.+.
T Consensus       178 --~~~~g~~~~n~Giy~~~~~~ll~~l~  203 (308)
T 2qh5_A          178 --FQKSGGFYFNSGMFVFQAGVFLDELK  203 (308)
T ss_dssp             --HHHHCCEEEEEEEEEEEHHHHHHHHH
T ss_pred             --HhhcCCeEEEeEEEEEEHHHHHHHHH
Confidence              11235678999999999998766665

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=95.93  E-value=0.0039  Score=66.18  Aligned_cols=81  Identities=22%  Similarity=0.288  Sum_probs=61.0

Q ss_pred             CCCCeeeccC-----CCcCcC----CCCceEEEEEecCccccccceEEEeCC--CCCcccccccccccceeecCCHHHHh
Q 002861            1 MTGDVLPCFD-----ASTMIL----PEDASCIITVPITLDIASNHGVIVAAK--DGILNENYALSLVDDLLQKPNVDELA   69 (873)
Q Consensus         1 ~~gD~i~~~d-----~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~--~~~~~~~~~~~~v~~fl~KPs~~~l~   69 (873)
                      +.||+++..|     +.+|+.    .++ +++...+++.+..+.+|++..|+  ++    .+   +|..|.+||..++  
T Consensus       127 ~~~D~~~~~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~~~~~~g~v~~~~~~~g----~~---~v~~~~Ekp~~~~--  196 (281)
T 3juk_A          127 ILADDLCISHDHPSVLKQMTSLYQKYQC-SIVAIEEVALEEVSKYGVIRGEWLEEG----VY---EIKDMVEKPNQED--  196 (281)
T ss_dssp             ECTTEEEECTTSCCHHHHHHHHHHHHCS-CEEEEEECCTTTGGGSEEEEEEEEETT----EE---EEEEEEESCCTTT--
T ss_pred             EeCCeeccCccchHHHHHHHHHHHHcCC-CEEEEEEechhhcccCCEEEeccCCCC----ce---EEeEEEECcCCCC--
Confidence            4699999998     666665    455 77777788888899999999985  33    01   5899999997432  


Q ss_pred             hcCcccCCCccceeeceeeecchHHHHHHh
Q 002861           70 KNHAILDDGRALLDTGIIAVRGKAWEELVM   99 (873)
Q Consensus        70 ~~~a~~~~~~~l~~~Gi~~f~~~~~~~ll~   99 (873)
                             +...++.+|+|+|+.+.+ +.+.
T Consensus       197 -------~~~~~~~~GiYi~~~~~l-~~l~  218 (281)
T 3juk_A          197 -------APSNLAVIGRYILTPDIF-EILS  218 (281)
T ss_dssp             -------CSCSEEEEEEEEECTTHH-HHHH
T ss_pred             -------CCcceeEEEEEEECHHHH-HHHH
Confidence                   134578999999999877 4454

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=95.68  E-value=0.0074  Score=63.70  Aligned_cols=75  Identities=15%  Similarity=0.206  Sum_probs=58.8

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      +.||+++..|+..++.    +++++++++.+++  ..+.+|++..|+ +         +|..|.+||..+          
T Consensus       129 ~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~~~g~v~~d~-g---------~v~~~~ekp~~~----------  186 (269)
T 4ecm_A          129 ILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVD--DPERFGVANIQN-R---------KIIEIEEKPKEP----------  186 (269)
T ss_dssp             EETTEEESSCSHHHHHHHHTSSSSEEEEEEECS--CGGGSEEEEEET-T---------EEEEEEESCSSC----------
T ss_pred             EeCCccCccCHHHHHHHHHhcCCCeEEEEEECC--CCCCceEEEEcC-C---------EEEEEEECCCCC----------
Confidence            3589999888877765    6789999998775  356899999884 5         799999999433          


Q ss_pred             CCccceeeceeeecchHHHHHHh
Q 002861           77 DGRALLDTGIIAVRGKAWEELVM   99 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~~ll~   99 (873)
                       ...++.+|+|+|+.+.+ +.+.
T Consensus       187 -~~~~~~~Giy~~~~~~l-~~l~  207 (269)
T 4ecm_A          187 -KSSYAVTGIYLYDSKVF-SYIK  207 (269)
T ss_dssp             -SCSEEEEEEEEECTTHH-HHHT
T ss_pred             -CCcEEEEEEEEECHHHH-Hhhh
Confidence             35588999999999977 4443

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=95.59  E-value=0.0092  Score=61.94  Aligned_cols=41  Identities=12%  Similarity=0.317  Sum_probs=24.2

Q ss_pred             eeeecCCceeCCCcEEEE---------ceeCCCeEECCCcEE-eCcCCCCC
Q 002861          209 SSKIAHGVSIGEDSLIYD---------SNISSGIQIGSLSIV-VGTNFPEE  249 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve~---------s~l~~~v~IG~~~ii-sg~~i~~~  249 (873)
                      +++|+.+|.|+++++|.+         ++|++++.||.+|+| .++.|.++
T Consensus       139 ~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~~~Ig~~  189 (240)
T 3r8y_A          139 RATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKG  189 (240)
T ss_dssp             TCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECTTCEECTT
T ss_pred             CCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECCCcEECCC
Confidence            455555555666665555         566666666666666 55555554

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=95.55  E-value=0.014  Score=58.27  Aligned_cols=39  Identities=18%  Similarity=0.395  Sum_probs=29.2

Q ss_pred             eecCCceeCCCcEEE------EceeCCCeEECCCcEEeCcCCCCC
Q 002861          211 KIAHGVSIGEDSLIY------DSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve------~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      +|+.+|.|+++++|.      +|+|++++.||.+|+|.++.|..+
T Consensus        74 ~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~~~Ig~~  118 (191)
T 3ixc_A           74 EVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACTLGNN  118 (191)
T ss_dssp             EECTTCEECTTCEECC----CCEEECTTCEECTTCEECSCEECTT
T ss_pred             EECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEECCEECCC
Confidence            677777777777776      677777777777777777777665

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=95.46  E-value=0.021  Score=56.02  Aligned_cols=40  Identities=10%  Similarity=0.251  Sum_probs=25.6

Q ss_pred             eeecCCceeCCCcEEE-----EceeCCCeEECCCcEEeCcCCCCC
Q 002861          210 SKIAHGVSIGEDSLIY-----DSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve-----~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      ++|+.+|.|+++++|.     +++|++++.||.+|.|.++.|..+
T Consensus        52 v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~   96 (173)
T 1xhd_A           52 TIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKD   96 (173)
T ss_dssp             EEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTT
T ss_pred             EEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECCC
Confidence            4666666666666666     566666666666666666665554

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=95.33  E-value=0.018  Score=57.10  Aligned_cols=39  Identities=15%  Similarity=0.280  Sum_probs=21.3

Q ss_pred             eecCCceeCCCcEE------------EEceeCCCeEECCCcEEeCcCCCCC
Q 002861          211 KIAHGVSIGEDSLI------------YDSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       211 vl~~~v~v~~~s~V------------e~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      +|+.+|.|++++.|            .+++|++++.||.+|+|.++.|.++
T Consensus        56 ~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~  106 (187)
T 3r3r_A           56 AIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGNR  106 (187)
T ss_dssp             EECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEESCEECSS
T ss_pred             EECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEeCcEECCC
Confidence            55555555555555            4455555555555555555555444

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=95.31  E-value=0.021  Score=55.94  Aligned_cols=60  Identities=15%  Similarity=0.287  Sum_probs=47.7

Q ss_pred             cccccceeEE-----eeeecCCceeCCCcEEEEceeCCCeEECCCcEEe-CcCCCCCCCCCccCccceeeCCCeee
Q 002861          199 SDIAASAVVL-----SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       199 ~~i~~~~~V~-----~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis-g~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      +.|..++.|.     +++|+.+|.|++++.|..|+|++++.||.+|+|. ++.|.++          +.|..++++
T Consensus        58 ~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~----------~~Ig~~s~V  123 (173)
T 1xhd_A           58 VNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEG----------AFIGAGSLV  123 (173)
T ss_dssp             CEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCEECTTCEECTTCEECTT----------CEECTTCEE
T ss_pred             CEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECCCCEEcCCCEEcCCCEECCC----------CEECCCCEE
Confidence            4455566665     6899999999999999999999999999999987 5777665          556666543

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=95.30  E-value=0.015  Score=58.17  Aligned_cols=50  Identities=24%  Similarity=0.307  Sum_probs=42.0

Q ss_pred             eeeecCCceeCCCcEEEEceeCCCeEECCCcEEeC-cCCCCCCCCCccCccceeeCCCeee
Q 002861          209 SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG-TNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg-~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      +++|+.+|.|+++++|..|+|++++.||.+|+|.. +.|..+          +.|.+|+++
T Consensus        95 ~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~~Ig~~----------~~Ig~gsvV  145 (191)
T 3ixc_A           95 DTVIGKFVTIGHSCILHACTLGNNAFVGMGSIVMDRAVMEEG----------SMLAAGSLL  145 (191)
T ss_dssp             CEEECTTCEECTTCEECSCEECTTCEECTTCEECTTCEECTT----------CEECTTCEE
T ss_pred             CeEECCCCEECCCCEEECCEECCCCEECCCCEEeCCeEECCC----------CEECCCCEE
Confidence            78999999999999999999999999999999875 666665          566666543

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=95.29  E-value=0.029  Score=56.93  Aligned_cols=49  Identities=24%  Similarity=0.192  Sum_probs=34.1

Q ss_pred             eeecCCceeCCCcEEEE-ceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          210 SKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~-s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      ++|+.+|.|++++.|.. ++|++++.||.+|+|.++.|.++          +.|.+|+.+
T Consensus       112 ~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~~~Ig~~----------~~Igags~V  161 (213)
T 3kwd_A          112 VWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFNARVGAG----------CVVMMHVLI  161 (213)
T ss_dssp             EEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTT----------CEECSSCEE
T ss_pred             eEECCCcEECCCcEEcCCCEECCCCEECCCCEEeCcEECCC----------CEEcCCCEE
Confidence            56777777777777776 77777777777777777666665          566666544

>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*

Probab=95.18  E-value=0.0046  Score=67.77  Aligned_cols=91  Identities=16%  Similarity=0.185  Sum_probs=59.9

Q ss_pred             CCCCeeecc--CCCcCcC--------CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhh
Q 002861            1 MTGDVLPCF--DASTMIL--------PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAK   70 (873)
Q Consensus         1 ~~gD~i~~~--d~~~~~~--------~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~   70 (873)
                      +.|||++..  ++...+.        +++.+|+...|..++  +.+|++..+++-.+. .+   +|..|.|||..++.++
T Consensus       106 l~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~~~--~~yG~I~~~~~~~~~-~~---~V~~f~EKp~~~~a~~  179 (336)
T 2x65_A          106 LPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPE--TGYGYIEIGEELEEG-VH---KVAQFREKPDLETAKK  179 (336)
T ss_dssp             EETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCSCC--SSSEEEEEEEEEETT-EE---EEEEEEESCCHHHHHH
T ss_pred             EcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecccCC--CCceEEEECCccCCC-cc---EEEEEEECCChHHHHH
Confidence            358887754  2222211        367788877777664  779999887540000 01   6999999999865332


Q ss_pred             cCcccCCCccceeeceeeecchHHHHHHhh
Q 002861           71 NHAILDDGRALLDTGIIAVRGKAWEELVML  100 (873)
Q Consensus        71 ~~a~~~~~~~l~~~Gi~~f~~~~~~~ll~~  100 (873)
                         ....+..+..+|+|+|+.+++.+.+..
T Consensus       180 ---~~~~g~y~~n~Giy~~~~~~ll~~l~~  206 (336)
T 2x65_A          180 ---FVESGRFLWNSGMFLWKAREFIEEVKV  206 (336)
T ss_dssp             ---HHHHTCEEEEEEEEEEEHHHHHHHHHH
T ss_pred             ---HHhcCCeEEEeeeEEEEHHHHHHHHHH
Confidence               123466789999999999988766653

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=95.04  E-value=0.031  Score=54.75  Aligned_cols=40  Identities=20%  Similarity=0.480  Sum_probs=22.4

Q ss_pred             eeecCCceeCCCcEEEEceeCCCeEECCCcEEe-CcCCCCC
Q 002861          210 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      ++|+.+|.|++++.|.+|+|++++.||.+|+|. ++.|.++
T Consensus        72 ~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~  112 (173)
T 1v3w_A           72 TEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDH  112 (173)
T ss_dssp             EEECSSCEECTTCEEESCEECSSEEECTTCEECTTCEECSS
T ss_pred             eEECCCCEECCCCEECCCEECCCCEECCCCEEeCCCEECCC
Confidence            555556666666666666666666666665544 3444443

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=94.93  E-value=0.04  Score=54.01  Aligned_cols=48  Identities=13%  Similarity=0.169  Sum_probs=40.0

Q ss_pred             eeecCCceeCCCcEEE-----EceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCee
Q 002861          210 SKIAHGVSIGEDSLIY-----DSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHC  267 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve-----~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~  267 (873)
                      ++|+.+|.|+++++|.     +++|++++.||.+|.|.++.|..+          +.|-.++.
T Consensus        50 ~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~----------~~Ig~~~~  102 (173)
T 1v3w_A           50 IYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNY----------VIIGISSV  102 (173)
T ss_dssp             EEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSS----------EEECTTCE
T ss_pred             EEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCC----------CEECCCCE
Confidence            7889999999999998     588999999999999999888776          66666654

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=94.93  E-value=0.028  Score=55.68  Aligned_cols=39  Identities=18%  Similarity=0.340  Sum_probs=23.1

Q ss_pred             eecCCceeCCCcEEEEc------------eeCCCeEECCCcEEeCcCCCCC
Q 002861          211 KIAHGVSIGEDSLIYDS------------NISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve~s------------~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      +|+.+|.|+++++|..+            +|++++.||.+|.|.++.|..+
T Consensus        60 ~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~  110 (189)
T 3r1w_A           60 RIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIGNR  110 (189)
T ss_dssp             EECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEESCEECSS
T ss_pred             EECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeCcEECCC
Confidence            55666666666666544            5566666666666666555554

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=94.86  E-value=0.039  Score=57.51  Aligned_cols=41  Identities=17%  Similarity=0.264  Sum_probs=25.0

Q ss_pred             eeeecCCceeCCCcEEEE-ceeCCCeEECCCcEEeCcCCCCC
Q 002861          209 SSKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve~-s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      +++|+.+|.|++++.|.. ++|++++.||.+|+|.++.|.++
T Consensus       140 ~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~v~Ig~~  181 (247)
T 1qre_A          140 AVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNN  181 (247)
T ss_dssp             SEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTT
T ss_pred             ceEECCCCEECCCCEEcCCcEECCCCEECCCCEEeceEECCC
Confidence            455666666666666666 66666666666666655555444

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=94.84  E-value=0.017  Score=59.82  Aligned_cols=35  Identities=14%  Similarity=0.377  Sum_probs=22.1

Q ss_pred             eeeecCCceeCCCcEEE-EceeCCCeEECCCcEEeC
Q 002861          209 SSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVG  243 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg  243 (873)
                      +++|+.+|.|+.+++|. +|+|++++.||.+|+|.+
T Consensus       121 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~  156 (240)
T 3r8y_A          121 GAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAG  156 (240)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTCEECC
T ss_pred             CCEECCCCEECCCCEECCCCEECCCcEECCCcEECC
Confidence            44555555555555554 677777777777777766

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=94.84  E-value=0.036  Score=54.84  Aligned_cols=51  Identities=20%  Similarity=0.345  Sum_probs=39.4

Q ss_pred             EeeeecCCceeCCCcEEEEceeCCCeEECCCcEEe-CcCCCCCCCCCccCccceeeCCCeee
Q 002861          208 LSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       208 ~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis-g~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      .+++|+.+|.|++++.|..++|++++.||.+|+|. ++.|..+          +.|..++.+
T Consensus        82 ~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~~Ig~~----------~~Ig~~s~V  133 (187)
T 3r3r_A           82 NPLIIGEDVTVGHKVMLHGCTIGNRVLVGMGSIVLDGAIIEDD----------VMIGAGSLV  133 (187)
T ss_dssp             BCEEECSSCEECTTCEEESCEECSSEEECTTCEECTTCEECSS----------EEECTTCEE
T ss_pred             CCeEECCCCEECCCCEEeCcEECCCCEECCCCEECCCCEECCC----------CEECCCCEE
Confidence            45788888888999999988899999999998884 4666555          666666643

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=94.76  E-value=0.052  Score=56.48  Aligned_cols=53  Identities=8%  Similarity=0.194  Sum_probs=43.8

Q ss_pred             eecCCceeCCCcEEEE------------------------ceeCCCeEECCCcEEeC-cCCCCCCCCCccCccceeeCCC
Q 002861          211 KIAHGVSIGEDSLIYD------------------------SNISSGIQIGSLSIVVG-TNFPEEAGSTAEDSFRFMLPDR  265 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve~------------------------s~l~~~v~IG~~~iisg-~~i~~~~~~~~~~~~~~~iP~~  265 (873)
                      +|+.+|.|+++++|..                        ++|++++.||.+|+|.+ +.|.++          +.|-.+
T Consensus       101 ~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~v~Ig~~~~I~~~~~Ig~~----------v~IG~~  170 (247)
T 1qre_A          101 FVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDD----------TFIGMQ  170 (247)
T ss_dssp             EECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEECTTCEEEEEEEECTT----------CEECTT
T ss_pred             EECCCCEECCCeEEEecccccccCcccccceeeccCccCceEECCCCEECCCCEEcCCcEECCC----------CEECCC
Confidence            7899999999999974                        78899999999999999 888877          778777


Q ss_pred             eeeeeeee
Q 002861          266 HCLWEVPL  273 (873)
Q Consensus       266 ~~i~~v~l  273 (873)
                      +.+..+.+
T Consensus       171 a~I~~v~I  178 (247)
T 1qre_A          171 AFVFKSKV  178 (247)
T ss_dssp             CEEEEEEE
T ss_pred             CEEeceEE
Confidence            76644544

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=94.76  E-value=0.028  Score=64.50  Aligned_cols=52  Identities=13%  Similarity=0.177  Sum_probs=45.1

Q ss_pred             cCCCcccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCc
Q 002861          193 IPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGT  244 (873)
Q Consensus       193 ~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~  244 (873)
                      +.+..++.|..++.|.+|+|+.+|.|+++++|..|+|++++.||.+|+|.+.
T Consensus       309 v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd~v~IG~~a~I~~~  360 (496)
T 3c8v_A          309 AWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDMIFTGFNSFLQGS  360 (496)
T ss_dssp             EEECTTCEECTTCEEEEEEEEESCEECTTCEEESEEEEETCEECTTCEEECC
T ss_pred             eEecCCCEECCCceEeceEeCCCCEECCCcEEcCceECCCcEECCCCEEeCC
Confidence            3334445566788889999999999999999999999999999999999987

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=94.59  E-value=0.058  Score=53.39  Aligned_cols=39  Identities=26%  Similarity=0.492  Sum_probs=31.3

Q ss_pred             eecCCceeCCCcEEEEceeCCCeEECCCcEEe-CcCCCCC
Q 002861          211 KIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      +|+.+|.|++++.|..++|++++.||.+|+|. ++.|..+
T Consensus        89 ~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~v~Ig~~  128 (189)
T 3r1w_A           89 IIGDDVTIGHQAMLHGCTIGNRVLIGMKSMIMDGAIVEDE  128 (189)
T ss_dssp             EECSSEEECTTCEEESCEECSSEEECTTCEECTTCEECSS
T ss_pred             EECCCCEECCCCEEeCcEECCCcEECCCCEEcCCCEECCC
Confidence            88888888888888888888888888888874 5555554

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=94.40  E-value=0.025  Score=61.44  Aligned_cols=79  Identities=19%  Similarity=0.218  Sum_probs=55.5

Q ss_pred             CCCCeeec--cCCCcCcC----CCCceEEEEEecCccccccceEEEeC----CCCCcccccccccccceeecCCHHHHhh
Q 002861            1 MTGDVLPC--FDASTMIL----PEDASCIITVPITLDIASNHGVIVAA----KDGILNENYALSLVDDLLQKPNVDELAK   70 (873)
Q Consensus         1 ~~gD~i~~--~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d----~~~~~~~~~~~~~v~~fl~KPs~~~l~~   70 (873)
                      +.||+++.  .++..++.    .++ ++++..+++.+..+.+|++.+|    +++ ..      +|..|.+||..+.   
T Consensus       139 ~~~D~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~d~~~~~~~-~~------~V~~~~Ekp~~~~---  207 (323)
T 2pa4_A          139 MLPDDLVLPTGVMERMAQVRAEFGG-SVLCAVEVSEADVSKYGIFEIEADTKDSD-VK------KVKGMVEKPAIED---  207 (323)
T ss_dssp             ECTTEEEESSCHHHHHHHHHHTTCS-EEEEEEECCGGGGGGSEEEEEEECCSSTT-EE------EEEEEEESCCTTT---
T ss_pred             EeCCcccCchHHHHHHHHHHHhcCC-cEEEEEEecccccCCccEEEeCCcccCCC-ce------eEEEEEECCCCcc---
Confidence            36899986  45555554    333 5666678887888899999876    332 00      5899999996531   


Q ss_pred             cCcccCCCccceeeceeeecchHHHH
Q 002861           71 NHAILDDGRALLDTGIIAVRGKAWEE   96 (873)
Q Consensus        71 ~~a~~~~~~~l~~~Gi~~f~~~~~~~   96 (873)
                            +...++.+|+|+|+.+.+..
T Consensus       208 ------~~~~~~~~GiY~~~~~~~~~  227 (323)
T 2pa4_A          208 ------APSRLAATGRYLLDRKIFDA  227 (323)
T ss_dssp             ------CSCSEEEEEEEEEETHHHHH
T ss_pred             ------ccccEEEEEEEEECHHHHHH
Confidence                  23457889999999986643

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=94.28  E-value=0.037  Score=62.85  Aligned_cols=48  Identities=21%  Similarity=0.292  Sum_probs=31.5

Q ss_pred             cccccccceeEEeeeecCC-------------------ceeCCCcEEEEceeCCCeEECCCcEEeCc
Q 002861          197 TVSDIAASAVVLSSKIAHG-------------------VSIGEDSLIYDSNISSGIQIGSLSIVVGT  244 (873)
Q Consensus       197 ~~~~i~~~~~V~~Svl~~~-------------------v~v~~~s~Ve~s~l~~~v~IG~~~iisg~  244 (873)
                      ..+.|..++.|.+|++..+                   |.|+++++|.+|+|+.+|.||.||+|.+.
T Consensus       351 ~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG~~~~i~~~  417 (451)
T 1yp2_A          351 LRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINK  417 (451)
T ss_dssp             TTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEECTTCEECCS
T ss_pred             CCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEECCCCEEeCC
Confidence            3344555666666666655                   67777777777777777777777777653

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=94.25  E-value=0.043  Score=57.30  Aligned_cols=34  Identities=18%  Similarity=0.170  Sum_probs=17.3

Q ss_pred             eeecCCceeCCCcEEE----EceeCCCeEECCCcEEeC
Q 002861          210 SKIAHGVSIGEDSLIY----DSNISSGIQIGSLSIVVG  243 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve----~s~l~~~v~IG~~~iisg  243 (873)
                      .+|+.+|.|++++.|.    +++|+.+|.||.+|+|.+
T Consensus       106 v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~  143 (252)
T 3jqy_B          106 VIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRA  143 (252)
T ss_dssp             EEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEEC
T ss_pred             EEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEec
Confidence            3455555555555555    455555555555555544

>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20

Probab=94.03  E-value=0.023  Score=62.23  Aligned_cols=88  Identities=17%  Similarity=0.174  Sum_probs=57.5

Q ss_pred             CCCCeeecc--C----CCcCc---CCCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhc
Q 002861            1 MTGDVLPCF--D----ASTMI---LPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKN   71 (873)
Q Consensus         1 ~~gD~i~~~--d----~~~~~---~~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~   71 (873)
                      +.|||++.-  +    ...+.   ..++.+|+...|..++  +.+|++..+++.. . .+   +|..|.|||..+.-++ 
T Consensus       106 l~~D~~~~~~~~~~~~l~~~~~~~~~~~~vt~~i~p~~~~--t~yG~I~~~~~~~-~-~~---~V~~f~EKp~~~~a~~-  177 (337)
T 2cu2_A          106 LPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPE--TEYGYIRLGPREG-A-WY---RGEGFVEKPSYAEALE-  177 (337)
T ss_dssp             EESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCC--SSSCEEEEEEEET-T-EE---EEEEEECCCCHHHHHH-
T ss_pred             EECCccCCCHHHHHHHHHHHHHHHHcCCeEEEeeccCCCC--CCceEEEECCccc-c-cC---eEEEEEeCCChHHHHH-
Confidence            358888753  1    12221   1357778777777554  6799998875400 0 01   7999999998764322 


Q ss_pred             CcccCCCccceeeceeeecchHHHHHHh
Q 002861           72 HAILDDGRALLDTGIIAVRGKAWEELVM   99 (873)
Q Consensus        72 ~a~~~~~~~l~~~Gi~~f~~~~~~~ll~   99 (873)
                        ....+ .+..+|+|+|+.+.+.+.+.
T Consensus       178 --~~~~g-~~~n~Giy~f~~~~ll~~l~  202 (337)
T 2cu2_A          178 --YIRKG-YVWNGGVFAFAPATMAELFR  202 (337)
T ss_dssp             --HHHTT-CEEEEEEEEECHHHHHHHHH
T ss_pred             --HhhcC-CEEEEEEEEEeHHHHHHHHH
Confidence              12234 78999999999999866665

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...

Probab=93.70  E-value=0.057  Score=57.75  Aligned_cols=74  Identities=16%  Similarity=0.135  Sum_probs=54.3

Q ss_pred             CCCeee-ccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            2 TGDVLP-CFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         2 ~gD~i~-~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      .||+++ ..++..++.    .++++++++.+++-  ...+||+..|+++         +|..|.+||..+          
T Consensus       108 ~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d--p~~~g~v~~d~~g---------~v~~~~ekp~~~----------  166 (293)
T 1fxo_A          108 LGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD--PERYGVVEFDQGG---------KAISLEEKPLEP----------  166 (293)
T ss_dssp             ETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSC--GGGSEEEEECTTS---------CEEEEEESCSSC----------
T ss_pred             ECChhccCccHHHHHHHHHhcCCCcEEEEEECCC--cccCcEEEECCCC---------cEEEEEECCCCC----------
Confidence            378765 445554444    46788988887643  4579999999877         799999999543          


Q ss_pred             CCccceeeceeeecchHHHHH
Q 002861           77 DGRALLDTGIIAVRGKAWEEL   97 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~~l   97 (873)
                       ....+.+|+|+|+.+++..+
T Consensus       167 -~s~~~~~Giy~~~~~~l~~~  186 (293)
T 1fxo_A          167 -KSNYAVTGLYFYDQQVVDIA  186 (293)
T ss_dssp             -SSSEEEEEEEEECTTHHHHH
T ss_pred             -CCCeEEEEEEEEcHHHHHHH
Confidence             22478999999999986544

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=93.65  E-value=0.056  Score=61.20  Aligned_cols=41  Identities=20%  Similarity=0.345  Sum_probs=32.9

Q ss_pred             eeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861          209 SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      +++|+.+|.|+++++|++|+|++++.|+++|.|.++.|.++
T Consensus       283 ~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~  323 (456)
T 2v0h_A          283 NVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEK  323 (456)
T ss_dssp             EEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTT
T ss_pred             CcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCC
Confidence            56788888888888888888888888888888877777665

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}

Probab=93.62  E-value=0.11  Score=54.33  Aligned_cols=68  Identities=15%  Similarity=0.086  Sum_probs=51.0

Q ss_pred             CCCCeee-ccCCCcCcCCCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCc
Q 002861            1 MTGDVLP-CFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGR   79 (873)
Q Consensus         1 ~~gD~i~-~~d~~~~~~~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~   79 (873)
                      +.||+++ ..++..+ ..+++.++++.+++-   ..+|++..|+++.    +   +|.+|.||+..             .
T Consensus       112 ~~gD~l~~~~~~~~~-~~~~~~~i~~~~~~~---p~yG~v~~d~~g~----~---~V~~i~EK~~~-------------s  167 (255)
T 4evw_A          112 FNIDTFRPNFVFPDI-SQHSDGYLEVFQGGG---DNWSFAKPEHAGS----T---KVIQTAEKNPI-------------S  167 (255)
T ss_dssp             CCTTEECTTCCCCGG-GGSSSEEEEEEECCS---SCSCEEEESSTTC----C---BEEEEESSSCS-------------S
T ss_pred             EeCCEEEecchhHHH-hhcCCcEEEEEecCC---CceeEEEECCCCC----e---EEEEEEeccCc-------------c
Confidence            5799988 4555554 367889999998763   3899999987641    1   58999999421             2


Q ss_pred             cceeeceeeecch
Q 002861           80 ALLDTGIIAVRGK   92 (873)
Q Consensus        80 ~l~~~Gi~~f~~~   92 (873)
                      .++.+|+|+|+..
T Consensus       168 ~~~~~GiY~f~~~  180 (255)
T 4evw_A          168 DLCSTGLYHFNRK  180 (255)
T ss_dssp             SEEEEEEEEESCH
T ss_pred             CcEEEeEEEECcH
Confidence            3889999999985

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=93.58  E-value=0.092  Score=53.41  Aligned_cols=40  Identities=20%  Similarity=0.310  Sum_probs=23.6

Q ss_pred             eeecCCceeCCCcEEE-EceeCCCeEECCCcEEeC-cCCCCC
Q 002861          210 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVG-TNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg-~~i~~~  249 (873)
                      +.|+.+|.|+++++|+ +|+|++++.|+.+|.|.+ +.|.++
T Consensus       130 ~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~  171 (220)
T 4ea9_A          130 SWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGER  171 (220)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTT
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCC
Confidence            3555556666666665 366666666666666665 555444

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6

Probab=93.54  E-value=0.053  Score=58.07  Aligned_cols=73  Identities=19%  Similarity=0.189  Sum_probs=53.4

Q ss_pred             CCeee-ccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCC
Q 002861            3 GDVLP-CFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDD   77 (873)
Q Consensus         3 gD~i~-~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~   77 (873)
                      ||+++ ..++..++.    .++++++++.+++-  ...+||+..|+++         +|..|.+||..+           
T Consensus       110 gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d--p~~~g~v~~d~~g---------~v~~~~ekp~~~-----------  167 (295)
T 1lvw_A          110 GDNVFYGHRFSEILRRAASLEDGAVIFGYYVRD--PRPFGVVEFDSEG---------RVISIEEKPSRP-----------  167 (295)
T ss_dssp             TTCCEECTTHHHHHHHHHTCCSSEEEEEEECSC--CTTSEEEEECTTS---------BEEEEEESCSSC-----------
T ss_pred             CCccccCcCHHHHHHHHHHcCCCcEEEEEECCC--cccCCEEEECCCC---------cEEEEEECCCCC-----------
Confidence            77754 445544443    45788988888643  3479999999887         799999999543           


Q ss_pred             CccceeeceeeecchHHHHH
Q 002861           78 GRALLDTGIIAVRGKAWEEL   97 (873)
Q Consensus        78 ~~~l~~~Gi~~f~~~~~~~l   97 (873)
                      ....+.+|+|+|+.+++..+
T Consensus       168 ~s~~~~~Giy~f~~~~l~~~  187 (295)
T 1lvw_A          168 KSNYVVPGLYFYDNQVVEIA  187 (295)
T ss_dssp             SCSEECCSEEEECTTHHHHH
T ss_pred             CCCEEEEEeEEEcHHHHHHH
Confidence            22378899999999986544

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=93.48  E-value=0.092  Score=59.46  Aligned_cols=41  Identities=12%  Similarity=0.272  Sum_probs=31.5

Q ss_pred             eeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861          209 SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      +++|+.+|.|+++++|.+++|++++.||.+|.|.++.|..+
T Consensus       286 ~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~  326 (459)
T 4fce_A          286 HVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDAN  326 (459)
T ss_dssp             EEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTT
T ss_pred             ceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCC
Confidence            46777788888888888888888888888887777777665

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=93.41  E-value=0.052  Score=60.41  Aligned_cols=38  Identities=24%  Similarity=0.248  Sum_probs=20.5

Q ss_pred             eecCCceeCCCcEEE-EceeCCCeEECCCcEEeCcCCCC
Q 002861          211 KIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVGTNFPE  248 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg~~i~~  248 (873)
                      .|+++|.|+++++|. +++|++++.||.+|.|.++.|..
T Consensus       264 ~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~  302 (401)
T 2ggo_A          264 YIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIME  302 (401)
T ss_dssp             EECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECT
T ss_pred             EECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcC
Confidence            455555555555554 45555555555555555554443

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=93.33  E-value=0.065  Score=53.56  Aligned_cols=40  Identities=20%  Similarity=0.264  Sum_probs=25.9

Q ss_pred             eeecCCceeCCCcEEE-EceeCCCeEECCCcEEeC-cCCCCC
Q 002861          210 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVG-TNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg-~~i~~~  249 (873)
                      +.|+.+|.|+++++|+ +|+|++++.|+.+|+|.+ +.|.++
T Consensus       108 ~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~  149 (194)
T 3bfp_A          108 AKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKN  149 (194)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             CEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCC
Confidence            4566666666666665 566777777777777766 555554

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=93.31  E-value=0.08  Score=52.69  Aligned_cols=39  Identities=21%  Similarity=0.343  Sum_probs=25.6

Q ss_pred             eecCCceeCCCcEE-------------------EEceeCCCeEECCCcEEe-CcCCCCC
Q 002861          211 KIAHGVSIGEDSLI-------------------YDSNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       211 vl~~~v~v~~~s~V-------------------e~s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      .|+.+|.|++++.|                   ..++|+++|.||.+|+|. ++.|.++
T Consensus        98 ~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~  156 (188)
T 3srt_A           98 EIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVIITPGITIGDN  156 (188)
T ss_dssp             EECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSCEECTTCEECTTCEECSS
T ss_pred             EECCeeEECCCcEEeeCCccCchhhccccceECCCcEECCCcEEcCCCEECCCcEECCC
Confidence            56777777777777                   345667777777777665 5555554

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=93.28  E-value=0.093  Score=52.71  Aligned_cols=33  Identities=18%  Similarity=0.106  Sum_probs=22.6

Q ss_pred             eeeecCCceeCCCcEE----EEceeCCCeEECCCcEE
Q 002861          209 SSKIAHGVSIGEDSLI----YDSNISSGIQIGSLSIV  241 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~V----e~s~l~~~v~IG~~~ii  241 (873)
                      +.+|+.+|.|++++.|    .+++|++++.||.+|.|
T Consensus        70 ~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I  106 (205)
T 3vbi_A           70 KVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIV  106 (205)
T ss_dssp             EEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEE
T ss_pred             ceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEE
Confidence            4567777777777777    33667777777777776

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6

Probab=93.26  E-value=0.045  Score=58.64  Aligned_cols=73  Identities=16%  Similarity=0.100  Sum_probs=53.6

Q ss_pred             CCCeee-ccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            2 TGDVLP-CFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         2 ~gD~i~-~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      .||+++ ..++..++.    .++++++++.+++-  ...+||+..|+++         +|..|.+||..+          
T Consensus       109 ~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d--p~~yg~v~~d~~g---------~v~~~~ekp~~~----------  167 (296)
T 1mc3_A          109 LGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMD--PERFGVVEFDDNF---------RAISLEEKPKQP----------  167 (296)
T ss_dssp             ETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSC--CSSSBBCEEETTE---------EEEECCBSCSSC----------
T ss_pred             ECCccccccCHHHHHHHHHHcCCCCEEEEEECCC--cccCCEEEECCCC---------cEEEEEECCCCC----------
Confidence            378765 455555544    45788998887643  4479999999877         799999999643          


Q ss_pred             CCccceeeceeeecchHHHH
Q 002861           77 DGRALLDTGIIAVRGKAWEE   96 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~~   96 (873)
                       ....+.+|+|+|+.+++..
T Consensus       168 -~s~~~~~Giy~~~~~~l~~  186 (296)
T 1mc3_A          168 -KSNWAVTGLYFYDSKVVEY  186 (296)
T ss_dssp             -SCSEEEEEEEECCTHHHHH
T ss_pred             -CCCEEEEEEEEEcHHHHHH
Confidence             2347899999999998654

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=93.10  E-value=0.061  Score=57.87  Aligned_cols=49  Identities=12%  Similarity=0.246  Sum_probs=38.4

Q ss_pred             eeeecCCceeCCCcEEEE---------ceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          209 SSKIAHGVSIGEDSLIYD---------SNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve~---------s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      .++|+.+|.|++++.|..         ++|+++|.||.||.| ++.|.++          ++|-.|+++
T Consensus       230 gv~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdnv~IGAnAtI-GVtIGd~----------~iIGAGSVV  287 (347)
T 3r5d_A          230 GVFVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLIGANAGI-GIPLGDR----------NIVEAGLYI  287 (347)
T ss_dssp             TCEECTTEEECTTCEECC------CCCCEECTTCEECTTCEE-CSCBCTT----------CEECTTCEE
T ss_pred             eEEECCCCEECCCCEEccccCCCCccceEECCCCEECCCCEE-eeEECCC----------CEECCCCEE
Confidence            367888888888888864         688888888888888 8888776          777777743

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=92.98  E-value=0.071  Score=60.66  Aligned_cols=49  Identities=20%  Similarity=0.437  Sum_probs=33.2

Q ss_pred             ccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEe-CcCCCCC
Q 002861          200 DIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       200 ~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      .|..++.|.+|+|+.+|.|+ ++.|++|+|++++.||.+|.|. ++.|..+
T Consensus       300 ~I~~~~~i~~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~  349 (468)
T 1hm9_A          300 VLTNGTYVVDSTIGAGAVIT-NSMIEESSVADGVTVGPYAHIRPNSSLGAQ  349 (468)
T ss_dssp             EECTTCEEESCEECTTCEEC-SCEEESCEECTTCEECSSCEECSSCEECTT
T ss_pred             EECCCCEEeccEEeCCcEEE-EEEEeccccCCCcEECCceEEecCcEECCc
Confidence            34455566667777777777 7777777777777777777776 5655544

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=92.97  E-value=0.11  Score=52.25  Aligned_cols=39  Identities=28%  Similarity=0.408  Sum_probs=22.3

Q ss_pred             eecCCceeCCCcEEEEc-------------------eeCCCeEECCCcEEe-CcCCCCC
Q 002861          211 KIAHGVSIGEDSLIYDS-------------------NISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve~s-------------------~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      +|+.+|.|++++.|.++                   +|+++|.||.+|+|. |+.|.++
T Consensus        96 ~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~  154 (199)
T 3ftt_A           96 TIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEG  154 (199)
T ss_dssp             EECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTTCEECTTCEECTT
T ss_pred             EECCCCEECCCCEEecCCCcCccccccccceecCCeEEcCCcEEcCCCEECCCCEECCC
Confidence            56666777777666433                   455555565555554 4444444

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=92.96  E-value=0.071  Score=57.00  Aligned_cols=48  Identities=15%  Similarity=0.273  Sum_probs=40.9

Q ss_pred             eeecCCceeCCCcEEEE---------ceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          210 SKIAHGVSIGEDSLIYD---------SNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~---------s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      ++|+.+|.|++++.|..         .+|++++.||.||.| ++.|.++          ++|-.|+++
T Consensus       208 v~IGd~v~IgpGa~IgG~~~~~~~~~V~IGDnv~IGanAtI-gVtIGd~----------~iIGAGSVV  264 (332)
T 3fsy_A          208 VVVGDGSDVGGGASIMGTLSGGGTHVISIGKRCLLGANSGL-GISLGDD----------CVVEAGLYV  264 (332)
T ss_dssp             CEECTTCEECTTCEECSBCC---CCBCEECTTCEECTTCEE-CSCBCSS----------CEECTTCEE
T ss_pred             eEECCCCEECCCCEEcCCCCCCCccceEECCCCEECCCCEE-eeEECCC----------CEECCCCEE
Confidence            67888889999988864         889999999999999 9998887          888888743

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}

Probab=92.96  E-value=0.074  Score=56.89  Aligned_cols=80  Identities=21%  Similarity=0.277  Sum_probs=52.9

Q ss_pred             CCCCeeecc--------CCCcCcC----CCCceEEEEEecCccccccceEEEeC----CCCCcccccccccccceeecCC
Q 002861            1 MTGDVLPCF--------DASTMIL----PEDASCIITVPITLDIASNHGVIVAA----KDGILNENYALSLVDDLLQKPN   64 (873)
Q Consensus         1 ~~gD~i~~~--------d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d----~~~~~~~~~~~~~v~~fl~KPs   64 (873)
                      +.||+++.+        ++..++.    .++ +|+...++  +..+.+|++..+    +++..   +   +|..|.+||.
T Consensus       134 ~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~--~~~~~yg~v~~~~~~~~~g~~---~---~v~~~~ekp~  204 (302)
T 2e3d_A          134 ILPDVILDEYESDLSQDNLAEMIRRFDETGH-SQIMVEPV--ADVTAYGVVDCKGVELAPGES---V---PMVGVVEKPK  204 (302)
T ss_dssp             ECTTEEECTTSSCTTTSTHHHHHHHHHHHCC-EEEEEEEC--SCGGGSEEEECTTCCCCTTCE---E---EECEEEESCC
T ss_pred             EcCCccccCccccchHHHHHHHHHHHHhcCC-cEEEEEEc--cCCCCccEEEecccccCCCCc---e---eEEEEEECCC
Confidence            468999864        4555554    345 66666664  667889999874    22200   1   5889999997


Q ss_pred             HHHHhhcCcccCCCccceeeceeeecchHHHHHHh
Q 002861           65 VDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM   99 (873)
Q Consensus        65 ~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~ll~   99 (873)
                      .+.         +...+..+|+|+|+.+.+ +.+.
T Consensus       205 ~~~---------~~~~~~~~Giyi~~~~~l-~~l~  229 (302)
T 2e3d_A          205 ADV---------APSNLAIVGRYVLSADIW-PLLA  229 (302)
T ss_dssp             TTT---------CSCSEEEEEEEEECTTHH-HHHT
T ss_pred             CCc---------cccceEEEEEEEECHHHH-HHHH
Confidence            531         234588999999999866 4443

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=92.93  E-value=0.081  Score=52.77  Aligned_cols=32  Identities=13%  Similarity=-0.012  Sum_probs=18.2

Q ss_pred             eeecCCceeCCCcEEEEceeCCCeEECCCcEE
Q 002861          210 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIV  241 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~ii  241 (873)
                      .+++.++.|+.++.++.+.|++++.||.+|+|
T Consensus        86 ~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I  117 (194)
T 3tv0_A           86 MIIGTNNVFEVGCYSQAMKMGDNNVIESKAYV  117 (194)
T ss_dssp             EEECSSCEECTTCEECCSEECSSCEECTTCEE
T ss_pred             eEECCcceEecceeEeeeeecccceecceeeE
Confidence            35666666666666665555555555555544

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=92.87  E-value=0.16  Score=53.02  Aligned_cols=62  Identities=21%  Similarity=0.236  Sum_probs=47.2

Q ss_pred             cccccccceeEE----eeeecCCceeCCCcEEEEc--------------------eeCCCeEECCCcEEe-CcCCCCCCC
Q 002861          197 TVSDIAASAVVL----SSKIAHGVSIGEDSLIYDS--------------------NISSGIQIGSLSIVV-GTNFPEEAG  251 (873)
Q Consensus       197 ~~~~i~~~~~V~----~Svl~~~v~v~~~s~Ve~s--------------------~l~~~v~IG~~~iis-g~~i~~~~~  251 (873)
                      ..+.|..++.|.    +++|+.+|.|+++++|.++                    +|++++.||.+|.|. ++.|.++  
T Consensus       110 ~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~--  187 (252)
T 3jqy_B          110 RRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSG--  187 (252)
T ss_dssp             TTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEECTT--
T ss_pred             CCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEECCCCEECCC--
Confidence            334455666666    8999999999999999996                    889999999998554 6777665  


Q ss_pred             CCccCccceeeCCCeee
Q 002861          252 STAEDSFRFMLPDRHCL  268 (873)
Q Consensus       252 ~~~~~~~~~~iP~~~~i  268 (873)
                              +.|.+|+++
T Consensus       188 --------~~IgagsvV  196 (252)
T 3jqy_B          188 --------SVIGYGSIV  196 (252)
T ss_dssp             --------CEECTTCEE
T ss_pred             --------CEECCCCEE
Confidence                    666666643

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=92.66  E-value=0.1  Score=60.10  Aligned_cols=42  Identities=26%  Similarity=0.307  Sum_probs=32.5

Q ss_pred             ccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeC
Q 002861          202 AASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG  243 (873)
Q Consensus       202 ~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg  243 (873)
                      .....+.+|+|+.++.|+..++|.+|+|+.+|.||++||+.+
T Consensus       362 G~~v~ik~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n  403 (501)
T 3st8_A          362 GAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVN  403 (501)
T ss_dssp             EETEEEESCEECTTCEEEESCEEESEEECSSCEECTTCEEEC
T ss_pred             CCeEEEccceecCCcEEeccceecCceEcCCCEECCCEEEEc
Confidence            344556778888888888888888888888888888888765

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=92.38  E-value=0.12  Score=51.25  Aligned_cols=40  Identities=23%  Similarity=0.390  Sum_probs=24.3

Q ss_pred             eeecCCceeCCCcEEE-------------------EceeCCCeEECCCcEEe-CcCCCCC
Q 002861          210 SKIAHGVSIGEDSLIY-------------------DSNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve-------------------~s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      ..|+.+|.|++++.|.                   .++|+++|.||.+|+|. ++.|.++
T Consensus        95 i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~~gv~IG~~  154 (185)
T 2p2o_A           95 VRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPGVTIGDN  154 (185)
T ss_dssp             EEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEECTTCEECTT
T ss_pred             eEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEECCCCEECCC
Confidence            3566666666666664                   34566666666666665 5555554

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=92.37  E-value=0.14  Score=51.11  Aligned_cols=39  Identities=23%  Similarity=0.371  Sum_probs=23.7

Q ss_pred             eecCCceeCCCcEEEE-------------------ceeCCCeEECCCcEEe-CcCCCCC
Q 002861          211 KIAHGVSIGEDSLIYD-------------------SNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve~-------------------s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      +|+.+|.|++++.|.+                   ++|+++|.||.||+|. |+.|.++
T Consensus        98 ~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~  156 (195)
T 3nz2_A           98 TIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQGVTIGAR  156 (195)
T ss_dssp             EECTTCEECTTCEEECEECCSSGGGTTTCCCEECCEEECTTCEECTTCEECTTCEECTT
T ss_pred             EECCCCEECCCCEEecCCCCcccccccccceecCCeEECCCCEEcCCCEECCCCEECCC
Confidence            5777777777777655                   2556666666666653 4555444

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=92.37  E-value=0.16  Score=50.53  Aligned_cols=40  Identities=18%  Similarity=0.351  Sum_probs=25.4

Q ss_pred             eeecCCceeCCCcEEEE-------------------ceeCCCeEECCCcEEe-CcCCCCC
Q 002861          210 SKIAHGVSIGEDSLIYD-------------------SNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~-------------------s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      ..|+.+|.|++++.|.+                   ++|+++|.||.+|+|. |+.|.++
T Consensus        99 v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~  158 (190)
T 3hjj_A           99 VRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIGDN  158 (190)
T ss_dssp             EEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEECTTCEECTT
T ss_pred             eEECCceEEcCCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEECCCCEECCC
Confidence            35777777777777743                   3566666666666665 5555554

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*

Probab=92.08  E-value=0.051  Score=56.45  Aligned_cols=67  Identities=18%  Similarity=0.259  Sum_probs=51.2

Q ss_pred             CCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCC
Q 002861            2 TGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDD   77 (873)
Q Consensus         2 ~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~   77 (873)
                      .||+++..++..++.    .++++|+...+    ..+.+|++.+| ++         +|..|.+||..+           
T Consensus       129 ~~D~~~~~~~~~~~~~~~~~~~~~t~~~~~----~~~~~g~v~~~-~g---------~v~~~~ekp~~~-----------  183 (259)
T 1tzf_A          129 YGDGVADLDIKATIDFHKAHGKKATLTATF----PPGRFGALDIQ-AG---------QVRSFQEKPKGD-----------  183 (259)
T ss_dssp             ETTEEECCCHHHHHHHHHHHCCSEEEEEEC----CCCCSEEEEEE-TT---------EEEEEEESCSCC-----------
T ss_pred             ECCEecccCHHHHHHHHHHhCCeEEEEEec----CCCCccEEEEc-CC---------EEEEEEecCCCC-----------
Confidence            589988887777665    56778876543    24679999888 55         799999999542           


Q ss_pred             CccceeeceeeecchHH
Q 002861           78 GRALLDTGIIAVRGKAW   94 (873)
Q Consensus        78 ~~~l~~~Gi~~f~~~~~   94 (873)
                       ..++.+|+|+|+.+++
T Consensus       184 -~~~~~~Giy~~~~~~l  199 (259)
T 1tzf_A          184 -GAMINGGFFVLNPSVI  199 (259)
T ss_dssp             -SCCEECCCEEECGGGG
T ss_pred             -CceEEEEEEEeCHHHH
Confidence             3478899999999876

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=91.98  E-value=0.19  Score=50.36  Aligned_cols=40  Identities=15%  Similarity=0.191  Sum_probs=28.0

Q ss_pred             eeecCCceeCCCcEE--------------------------EEceeCCCeEECCCcEEe-CcCCCCC
Q 002861          210 SKIAHGVSIGEDSLI--------------------------YDSNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~V--------------------------e~s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      ++|+.+|.|++++.|                          ..++|++++.||.+|+|. ++.|.++
T Consensus        92 ~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~  158 (205)
T 3vbi_A           92 IEMYDFANISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEG  158 (205)
T ss_dssp             EEECTTCEECTTCEEESEECCCSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTT
T ss_pred             EEECCCCEECCCcEEEeCCCCcccccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCC
Confidence            778888888888888                          346667777777777765 5555544

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=91.85  E-value=0.11  Score=56.57  Aligned_cols=40  Identities=25%  Similarity=0.407  Sum_probs=33.0

Q ss_pred             eeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861          210 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      ++|+++|+|+++++|.+|+|+++++|+.+|.|.+..|..+
T Consensus        84 ~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~  123 (334)
T 2pig_A           84 CTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREE  123 (334)
T ss_dssp             CEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESS
T ss_pred             eeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCC
Confidence            6788888888888888888888888888888888776554

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=91.85  E-value=0.34  Score=49.01  Aligned_cols=18  Identities=11%  Similarity=0.108  Sum_probs=10.5

Q ss_pred             eeeecCCceeCCCcEEEE
Q 002861          209 SSKIAHGVSIGEDSLIYD  226 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve~  226 (873)
                      +++|+.+|.|++++.|.+
T Consensus       100 ~i~IG~~~~Ig~~~~I~~  117 (215)
T 2wlg_A          100 KISIGKDCMLAHGYEIRN  117 (215)
T ss_dssp             EEEECTTCEECTTEEEES
T ss_pred             CEEECCCCEEcCCEEEEC
Confidence            345566666666666654

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=91.82  E-value=0.12  Score=54.63  Aligned_cols=15  Identities=27%  Similarity=0.260  Sum_probs=6.0

Q ss_pred             ceeCCCeEECCCcEE
Q 002861          227 SNISSGIQIGSLSIV  241 (873)
Q Consensus       227 s~l~~~v~IG~~~ii  241 (873)
                      ++|++++.||.+|+|
T Consensus       178 v~IGd~v~IG~~a~I  192 (276)
T 3gos_A          178 TIIEDNCFVGARSEV  192 (276)
T ss_dssp             CEECTTCEECTTCEE
T ss_pred             eEECCCCEECCCCEE
Confidence            334444444444433

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=91.82  E-value=0.098  Score=57.93  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=18.3

Q ss_pred             eeeecCCceeCCCcEEE-EceeCCCeEECCCcEEe
Q 002861          209 SSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV  242 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iis  242 (873)
                      +++|+.+|.|+++++|. +++|.++++||++|+|.
T Consensus       161 ~~~Ig~~v~IG~~~~I~~~~~I~~~~~IG~~v~I~  195 (372)
T 3pmo_A          161 HCVIGARSVIGEGGWLAPRVTLYHDVTIGARVSIQ  195 (372)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTEEECTTCEEC
T ss_pred             CCEECCCCEECCCcccCCCcEEEeeeEECceeecc
Confidence            34455555555555555 55555555555555554

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=91.74  E-value=0.11  Score=55.99  Aligned_cols=13  Identities=31%  Similarity=0.304  Sum_probs=5.6

Q ss_pred             ceeCCCeEECCCc
Q 002861          227 SNISSGIQIGSLS  239 (873)
Q Consensus       227 s~l~~~v~IG~~~  239 (873)
                      ++|++++.||.+|
T Consensus       203 v~IGd~v~IG~~a  215 (304)
T 3eg4_A          203 TIIEDNCFIGARS  215 (304)
T ss_dssp             CEECTTCEECTTC
T ss_pred             eEEcCCCEECCCC
Confidence            4444444444444

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}

Probab=91.68  E-value=0.032  Score=59.67  Aligned_cols=81  Identities=16%  Similarity=0.115  Sum_probs=36.7

Q ss_pred             CCCCeeec---cCCCcCcC----CCCceEEEEEecCccccccceEEEeCC--CCCcccccccccccceeecCCHHHHhhc
Q 002861            1 MTGDVLPC---FDASTMIL----PEDASCIITVPITLDIASNHGVIVAAK--DGILNENYALSLVDDLLQKPNVDELAKN   71 (873)
Q Consensus         1 ~~gD~i~~---~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~--~~~~~~~~~~~~v~~fl~KPs~~~l~~~   71 (873)
                      +.||+++.   .++..++.    .++ +++...+++.+..+.+|++..|+  ++ .   +   +|..|.+||..+.    
T Consensus       138 ~~~D~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~~~~~~~-~---~---~v~~~~ekp~~~~----  205 (297)
T 2ux8_A          138 LLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQDGV-L---T---EVKGLVEKPAPGT----  205 (297)
T ss_dssp             ECTTEEEESSSCHHHHHHHHHHHHCS-EEEEEC-----------CCCCCCBCSS-E---E---EC---------------
T ss_pred             EeCCeecCCChHHHHHHHHHHHhcCC-CEEEEEecCcccCCCCCeEEecccCCC-c---e---eEEEEEECCCCCC----
Confidence            46899976   45555554    344 56666677767778899987763  21 0   0   5889999996532    


Q ss_pred             CcccCCCccceeeceeeecchHHHHHHh
Q 002861           72 HAILDDGRALLDTGIIAVRGKAWEELVM   99 (873)
Q Consensus        72 ~a~~~~~~~l~~~Gi~~f~~~~~~~ll~   99 (873)
                           +...+..+|+|+|+.+.+ +.+.
T Consensus       206 -----~~~~~~~~Giyi~~~~~l-~~l~  227 (297)
T 2ux8_A          206 -----APSNLSVIGRYILQPEVM-RILE  227 (297)
T ss_dssp             --------CCCEEEEEEECTHHH-HHHH
T ss_pred             -----CCccEEEEEEEEECHHHH-HHHH
Confidence                 124578899999999865 4443

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=91.62  E-value=0.18  Score=54.89  Aligned_cols=51  Identities=14%  Similarity=0.121  Sum_probs=29.4

Q ss_pred             cCCCcccccccceeEEeeeecCCceeCCCcEEEEce-----eCCCeEECCCcEEeC
Q 002861          193 IPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSN-----ISSGIQIGSLSIVVG  243 (873)
Q Consensus       193 ~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~-----l~~~v~IG~~~iisg  243 (873)
                      +.+..++.|..++.|-+|+|+.++.|+++++|..+.     |++++.|+.++.|.+
T Consensus       163 s~I~~g~~I~~~a~I~~svI~~~a~I~~~a~V~~~~~~~v~I~~~~~I~g~a~V~R  218 (334)
T 2pig_A          163 SRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIA  218 (334)
T ss_dssp             CEEETTCEECTTCEEESEEECTTCEECTTCEEECCSSCCEEECTTCEECTTCEEEC
T ss_pred             cEEcCCCEEcCCeEEeCcEEcCCCEECCCcEECCceeccEEECCCcEEeeeEEEec
Confidence            333333444444555566666666666666666665     666666666666643

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=91.52  E-value=0.11  Score=57.62  Aligned_cols=41  Identities=20%  Similarity=0.206  Sum_probs=30.5

Q ss_pred             eeeecCCceeCCCcEE-EEceeCCCeEECCCcEEe-CcCCCCC
Q 002861          209 SSKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~V-e~s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      +++|+++|+|+++++| .+|+|++++.||++|+|. ++.|..+
T Consensus       143 ~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG~~~~I~~~~~I~~~  185 (372)
T 3pmo_A          143 YAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHD  185 (372)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCcccCCCcEEEee
Confidence            4566777778888877 678888888888888887 6665443

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=91.29  E-value=0.14  Score=51.20  Aligned_cols=32  Identities=16%  Similarity=0.049  Sum_probs=13.7

Q ss_pred             eeecCCceeCCCcEEEE-ceeCCCeEECCCcEE
Q 002861          210 SKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIV  241 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~-s~l~~~v~IG~~~ii  241 (873)
                      ++|+.+|.|++++.|.. ++|++++.||.++.|
T Consensus       126 ~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i  158 (194)
T 3bfp_A          126 CVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCV  158 (194)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             CEECCCCEECCCCEECCCcEECCCCEEcCCCEE
Confidence            33444444444444433 444444444444433

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=91.08  E-value=0.27  Score=49.54  Aligned_cols=14  Identities=21%  Similarity=0.321  Sum_probs=6.3

Q ss_pred             eecCCceeCCCcEE
Q 002861          211 KIAHGVSIGEDSLI  224 (873)
Q Consensus       211 vl~~~v~v~~~s~V  224 (873)
                      .|+.+|.|++++.|
T Consensus        97 ~IG~~v~Ig~~v~I  110 (203)
T 1krr_A           97 TIGDNVLIAPNVTL  110 (203)
T ss_dssp             EECSSCEECSSCEE
T ss_pred             EECCCCEECCCCEE
Confidence            34444444444444

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=90.96  E-value=0.14  Score=56.77  Aligned_cols=48  Identities=13%  Similarity=0.212  Sum_probs=21.1

Q ss_pred             eecCCceeCCCcEE-EEceeCCCeEECCCcEE-eCcCCCCCCCCCccCccceeeCCCeee
Q 002861          211 KIAHGVSIGEDSLI-YDSNISSGIQIGSLSIV-VGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       211 vl~~~v~v~~~s~V-e~s~l~~~v~IG~~~ii-sg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      +|+.+|.|+++++| .+|+|++++.|+.+|+| .++.|..+          +.|.++++|
T Consensus       156 ~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~----------~~I~~~~~I  205 (374)
T 2iu8_A          156 HVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKR----------VIIQPGAVI  205 (374)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTT----------CEECTTCEE
T ss_pred             EECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCC----------CEECCCCEE
Confidence            34444444444444 23444444444444444 23334333          556666554

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=90.86  E-value=0.3  Score=48.30  Aligned_cols=40  Identities=18%  Similarity=0.380  Sum_probs=24.3

Q ss_pred             eeecCCceeCCCcEEE-------------------EceeCCCeEECCCcEEe-CcCCCCC
Q 002861          210 SKIAHGVSIGEDSLIY-------------------DSNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve-------------------~s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      ..|+.+|.|++++.|.                   .++|++++.||.+|+|. ++.|..+
T Consensus        93 i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~~gv~IG~~  152 (182)
T 1ocx_A           93 IRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDN  152 (182)
T ss_dssp             EEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEECTT
T ss_pred             eEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEECCCcEECCC
Confidence            3567777777777773                   35566666666666654 4555444

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=90.67  E-value=0.28  Score=52.07  Aligned_cols=40  Identities=20%  Similarity=0.285  Sum_probs=28.3

Q ss_pred             eeecCCceeCCCcEEEE---------ceeCCCeEECCCcEEeC-cCCCCC
Q 002861          210 SKIAHGVSIGEDSLIYD---------SNISSGIQIGSLSIVVG-TNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~---------s~l~~~v~IG~~~iisg-~~i~~~  249 (873)
                      ++|+.+|.|+.++.|..         ++|+++|.||.||+|.+ +.|.++
T Consensus       191 ~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG~~  240 (287)
T 3mc4_A          191 AVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQC  240 (287)
T ss_dssp             CEECSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEESSCEECTT
T ss_pred             eEECCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEECCC
Confidence            46666677766767765         57888888888888774 666665

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=90.46  E-value=0.19  Score=52.91  Aligned_cols=33  Identities=12%  Similarity=0.305  Sum_probs=19.0

Q ss_pred             eeeecCCceeCCCcEEE-EceeCCCeEECCCcEE
Q 002861          209 SSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIV  241 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~ii  241 (873)
                      +++|+.+|.|+++++|. ++.|+.++.|+.+|.|
T Consensus        31 ~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~I   64 (270)
T 1j2z_A           31 GVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVL   64 (270)
T ss_dssp             TCEECTTCEECTTCEECSEEEECTTCEECTTCEE
T ss_pred             CCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEE
Confidence            44555555555555555 5566666666666665

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=90.17  E-value=0.21  Score=53.68  Aligned_cols=42  Identities=24%  Similarity=0.357  Sum_probs=24.5

Q ss_pred             cccceeEEeeeecCCceeCCCcEEEE-ceeCCCeEECCCcEEe
Q 002861          201 IAASAVVLSSKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIVV  242 (873)
Q Consensus       201 i~~~~~V~~Svl~~~v~v~~~s~Ve~-s~l~~~v~IG~~~iis  242 (873)
                      |..++.|..+++.+++.||++++|.. ++|++++.||++|.|.
T Consensus       144 Ig~g~~I~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~  186 (304)
T 3eg4_A          144 IAPNAILMPSFVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLS  186 (304)
T ss_dssp             ECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEEC
T ss_pred             ECCCCEEeCCEECCCCEECCCcEEcCCcEECCCCccCCCcEEC
Confidence            44455555556677777777777766 4455555555555443

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=90.15  E-value=0.2  Score=50.47  Aligned_cols=56  Identities=23%  Similarity=0.399  Sum_probs=30.7

Q ss_pred             cCCceeCCCcEEE-EceeCCCeEECCCcEEe-CcCCCCCCCCCccCccceeeCCCeeeeeeeecCcceEEEEEec
Q 002861          213 AHGVSIGEDSLIY-DSNISSGIQIGSLSIVV-GTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCG  285 (873)
Q Consensus       213 ~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iis-g~~i~~~~~~~~~~~~~~~iP~~~~i~~v~l~~~~~~v~~~~G  285 (873)
                      ...++||+++||. +|+|.++++||++|+|- |+.+.++            ||+++.+     .|....+++-..
T Consensus       129 ~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d------------vp~~~vv-----~G~PArvik~~~  186 (203)
T 1krr_A          129 SFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKD------------IPPNVVA-----AGVPCRVIREIN  186 (203)
T ss_dssp             ECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC------------BCTTEEE-----ETTTTEEEEECC
T ss_pred             CCCcEECCCeEECCCCEEeCCeEECCCCEECCCCEECCC------------cCCCcEE-----EccCcEEeccCC
Confidence            3445555555554 35556666666666663 3333222            6888743     255566666543

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=90.07  E-value=0.23  Score=52.59  Aligned_cols=43  Identities=19%  Similarity=0.338  Sum_probs=21.0

Q ss_pred             cccceeEEeeeecCCceeCCCcEEE------E-ceeCCCeEECCCcEEeC
Q 002861          201 IAASAVVLSSKIAHGVSIGEDSLIY------D-SNISSGIQIGSLSIVVG  243 (873)
Q Consensus       201 i~~~~~V~~Svl~~~v~v~~~s~Ve------~-s~l~~~v~IG~~~iisg  243 (873)
                      |..++.|..+++..++.||+++.|.      + |.|+++|.|+.++.|.+
T Consensus       119 Ig~g~~I~~~~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g  168 (276)
T 3gos_A          119 IARNTVLMPSYVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGG  168 (276)
T ss_dssp             ECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECC
T ss_pred             ECCCCEEcCCEEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence            3334333333444455555544444      4 55555555555555543

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=90.07  E-value=0.3  Score=52.63  Aligned_cols=53  Identities=13%  Similarity=0.242  Sum_probs=35.5

Q ss_pred             eeecCCceeCCCcEEE-----EceeCCCeEECCCcEEeC---------cCCCCCCCCCccCccceeeCCCeeeeeeee
Q 002861          210 SKIAHGVSIGEDSLIY-----DSNISSGIQIGSLSIVVG---------TNFPEEAGSTAEDSFRFMLPDRHCLWEVPL  273 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve-----~s~l~~~v~IG~~~iisg---------~~i~~~~~~~~~~~~~~~iP~~~~i~~v~l  273 (873)
                      +++..++.|++++.|.     .++|++++.||.+|.|.+         +.|.++          +.|-.|++| .+.+
T Consensus       209 a~Vn~na~IGdg~iI~~~a~igv~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdn----------v~IGAnAtI-GVtI  275 (347)
T 3r5d_A          209 GFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGCSTMGTLSGGGNIVISVGEG----------CLIGANAGI-GIPL  275 (347)
T ss_dssp             CEECTTEEESSSEEECSEECTTCEECTTEEECTTCEECC------CCCCEECTT----------CEECTTCEE-CSCB
T ss_pred             CEECCCCEECCCcEEcCCceEeEEECCCCEECCCCEEccccCCCCccceEECCC----------CEECCCCEE-eeEE
Confidence            4555555555555553     278889999999998877         556555          667777666 5555

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=89.84  E-value=0.14  Score=53.34  Aligned_cols=74  Identities=15%  Similarity=0.005  Sum_probs=51.4

Q ss_pred             CCCceEEEEEecC-ccccc--cceEEEeCCCCCcccccccccccceeecCCHHHHh---hcCcccCCCccceeeceeeec
Q 002861           17 PEDASCIITVPIT-LDIAS--NHGVIVAAKDGILNENYALSLVDDLLQKPNVDELA---KNHAILDDGRALLDTGIIAVR   90 (873)
Q Consensus        17 ~~a~vtv~a~p~~-~~~a~--~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~---~~~a~~~~~~~l~~~Gi~~f~   90 (873)
                      +++++++++.|++ ++...  +-|+++.|++|         ++..|-+||-.++-.   +... ..+...+..+|+|+|+
T Consensus       119 ~~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~g---------~v~~fsr~~i~~~~~~~~~~~~-~~~~~~~~n~GiY~~~  188 (252)
T 3oam_A          119 CSAPMATLAVEIEDEAEVFNPNAVKVITDKSG---------YALYFSRATIPWDRDNFAKADK-AIVQPLLRHIGIYAYR  188 (252)
T ss_dssp             SSCSEEEEEEEECCHHHHTCTTSCEEEECTTS---------BEEEEESSCSSCCHHHHHSSSC-CCCSCEEEEEEEEEEE
T ss_pred             cCCCEEEEeeecCCHHHhhCCCceEEEECCCC---------eEEEEeCCCCCCCCCccccccc-cccccceEEEEEEEcC
Confidence            5789999999875 22222  23889999888         799999998543211   0000 0134568999999999


Q ss_pred             chHHHHHHhh
Q 002861           91 GKAWEELVML  100 (873)
Q Consensus        91 ~~~~~~ll~~  100 (873)
                      .+++.++...
T Consensus       189 ~~~l~~~~~~  198 (252)
T 3oam_A          189 AGFINTYLDW  198 (252)
T ss_dssp             TTHHHHHHHS
T ss_pred             HHHHHHHHcC
Confidence            9999987763

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=89.43  E-value=0.29  Score=49.62  Aligned_cols=32  Identities=13%  Similarity=0.223  Sum_probs=14.3

Q ss_pred             eeecCCceeCCCcEEEE-ceeCCCeEECCCcEE
Q 002861          210 SKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIV  241 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~-s~l~~~v~IG~~~ii  241 (873)
                      ++|+.+|.|++++.|.. ++|++++.||.+|+|
T Consensus       148 ~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i  180 (220)
T 4ea9_A          148 CRLGAACHLGPASALAGGVSVGERAFLGVGARV  180 (220)
T ss_dssp             CEECTTCEECTTCEECSSCEECTTCEECTTCEE
T ss_pred             CEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence            33444444444444433 444444444444444

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=88.95  E-value=0.38  Score=48.13  Aligned_cols=35  Identities=17%  Similarity=0.271  Sum_probs=30.3

Q ss_pred             eeeecCCceeCCCcEEEEc---eeCCCeEECCCcEEeC
Q 002861          209 SSKIAHGVSIGEDSLIYDS---NISSGIQIGSLSIVVG  243 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve~s---~l~~~v~IG~~~iisg  243 (873)
                      +..|+.+|.|+++++|.++   +|+++|.||.+|.|..
T Consensus        74 ~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~  111 (199)
T 3ftt_A           74 NVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYT  111 (199)
T ss_dssp             TEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEEC
T ss_pred             CcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEec
Confidence            4568999999999999876   8999999999999943

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=88.88  E-value=0.46  Score=50.77  Aligned_cols=58  Identities=16%  Similarity=0.245  Sum_probs=42.2

Q ss_pred             eeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeeeeeeecCcceEEE
Q 002861          210 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVL  281 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~~v~l~~~~~~v~  281 (873)
                      .+|+.+|.||++++| .+.|++++.||.+++|+.=-             .+.+|+|..+-.-.|.|.....+
T Consensus       234 V~IGDnv~IGanAtI-gVtIGd~~iIGAGSVVtkdt-------------~I~~~~g~~v~a~el~g~~~~~f  291 (332)
T 3fsy_A          234 ISIGKRCLLGANSGL-GISLGDDCVVEAGLYVTAGT-------------RVTMPDSNSVKARELSGSSNLLF  291 (332)
T ss_dssp             CEECTTCEECTTCEE-CSCBCSSCEECTTCEECTTC-------------EEECTTSCEEEGGGGTTCSSEEE
T ss_pred             eEECCCCEECCCCEE-eeEECCCCEECCCCEECCCC-------------EEEeCCCCEEEhHHhcCCCCCEE
Confidence            689999999999999 99999999999999986533             27777877443333434333333

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=88.87  E-value=0.23  Score=49.17  Aligned_cols=29  Identities=31%  Similarity=0.502  Sum_probs=16.7

Q ss_pred             cCCceeCCCcEEE-EceeCCCeEECCCcEE
Q 002861          213 AHGVSIGEDSLIY-DSNISSGIQIGSLSIV  241 (873)
Q Consensus       213 ~~~v~v~~~s~Ve-~s~l~~~v~IG~~~ii  241 (873)
                      ...++|++++||. +|+|.++++||++|+|
T Consensus       126 ~~~v~IG~~v~Ig~~a~I~~gv~IG~~~vI  155 (182)
T 1ocx_A          126 GKPVTIGNNVWIGGRAVINPGVTIGDNVVV  155 (182)
T ss_dssp             ECCEEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             cCCeEEeCCeEECCCCEECCCcEECCCCEE
Confidence            3445555555553 3455666666666666

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=88.73  E-value=0.38  Score=51.85  Aligned_cols=9  Identities=0%  Similarity=-0.031  Sum_probs=4.7

Q ss_pred             hhHHHHhhc
Q 002861          120 LYEDLVAAW  128 (873)
Q Consensus       120 ~y~df~~~~  128 (873)
                      ...|++..|
T Consensus        72 ~~~~~~~~l   80 (316)
T 3tk8_A           72 AVAHAIEQL   80 (316)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            334665555

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=88.59  E-value=0.31  Score=53.59  Aligned_cols=31  Identities=10%  Similarity=0.159  Sum_probs=12.6

Q ss_pred             eecCCceeCCCcEEE-EceeCCCeEECCCcEE
Q 002861          211 KIAHGVSIGEDSLIY-DSNISSGIQIGSLSIV  241 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~ii  241 (873)
                      +|+.+|.|+++++|. +|.|++++.|+.+|.|
T Consensus       134 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I  165 (357)
T 4e79_A          134 VVGDNTVIQSHTKLDDNVEVGKDCFIDSYVTI  165 (357)
T ss_dssp             EECTTCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCcEE
Confidence            334444444444443 3344444444444433

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=88.59  E-value=0.42  Score=50.25  Aligned_cols=41  Identities=20%  Similarity=0.268  Sum_probs=27.4

Q ss_pred             eeeecCCceeCCCcEEEE---------ceeCCCeEECCCcEEe-CcCCCCC
Q 002861          209 SSKIAHGVSIGEDSLIYD---------SNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve~---------s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      +++|+.+|+|+.+++|..         ++|+++|.||.|++|. ++.|..+
T Consensus       163 ~~~IG~~v~I~~gvtig~~~~~~~~~~~~IGd~v~IGaga~Il~gv~IG~~  213 (267)
T 1ssq_A          163 TSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKY  213 (267)
T ss_dssp             TCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTT
T ss_pred             eeEECCCCEEcCCcEECCCcccCCCCCeEECCCeEEcCCCEEeCCcEECCC
Confidence            356777777777777765         4677777777777765 3555554

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=88.47  E-value=0.23  Score=54.19  Aligned_cols=16  Identities=19%  Similarity=0.339  Sum_probs=9.2

Q ss_pred             ceeCCCeEECCCcEEe
Q 002861          227 SNISSGIQIGSLSIVV  242 (873)
Q Consensus       227 s~l~~~v~IG~~~iis  242 (873)
                      .+|+++|.||++|.|.
T Consensus       201 v~IGd~v~Ig~~~~I~  216 (341)
T 3eh0_A          201 VIIGDRVEIGACTTID  216 (341)
T ss_dssp             EEECSSCEECTTCEEE
T ss_pred             EEECCCcEECCccEee
Confidence            4555556666665554

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=88.44  E-value=0.35  Score=51.90  Aligned_cols=22  Identities=5%  Similarity=0.078  Sum_probs=14.6

Q ss_pred             eeCCCeEECCCcEEe-CcCCCCC
Q 002861          228 NISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       228 ~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      +|+++|.||.||+|. ++.|..+
T Consensus       253 ~IGd~V~IGaga~Il~gv~IGd~  275 (310)
T 3f1x_A          253 ILEDDVIVYSNATILGRVTIGKG  275 (310)
T ss_dssp             EECTTCEECTTCEEESSCEECTT
T ss_pred             EECCCcEEcCCCEECCCcEECCC
Confidence            477777777777776 5555554

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=88.26  E-value=0.44  Score=50.62  Aligned_cols=40  Identities=23%  Similarity=0.325  Sum_probs=27.6

Q ss_pred             eeecCCceeCCCcEEEE---------ceeCCCeEECCCcEEeC-cCCCCC
Q 002861          210 SKIAHGVSIGEDSLIYD---------SNISSGIQIGSLSIVVG-TNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~---------s~l~~~v~IG~~~iisg-~~i~~~  249 (873)
                      ++|+.+|+|+.+++|..         ++|+++|.||.||+|.+ +.|.++
T Consensus       184 ~~IG~~v~I~~gvtLg~~~~~~~~~~~~IGd~v~IGaga~Ilggv~IG~~  233 (289)
T 1t3d_A          184 AVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRG  233 (289)
T ss_dssp             CEECSSCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTT
T ss_pred             cEECCCCEEcCCcEECCCccccCCCCeEECCCeEECCCCEEecCcEECCC
Confidence            56777777777777764         57777888888877763 555554

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=88.19  E-value=0.25  Score=54.35  Aligned_cols=9  Identities=0%  Similarity=-0.082  Sum_probs=4.8

Q ss_pred             cceeecCCH
Q 002861           57 DDLLQKPNV   65 (873)
Q Consensus        57 ~~fl~KPs~   65 (873)
                      ..|+..|..
T Consensus        43 ~~f~~~~~~   51 (357)
T 4e79_A           43 LTFVNGEKH   51 (357)
T ss_dssp             EEECCSGGG
T ss_pred             EEEeCChhH
Confidence            455555554

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=88.01  E-value=0.45  Score=47.17  Aligned_cols=33  Identities=9%  Similarity=0.202  Sum_probs=28.5

Q ss_pred             eeeecCCceeCCCcEEEEc---eeCCCeEECCCcEE
Q 002861          209 SSKIAHGVSIGEDSLIYDS---NISSGIQIGSLSIV  241 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve~s---~l~~~v~IG~~~ii  241 (873)
                      ++.|++++.|+.+++|.++   .|+++|.||.+|.|
T Consensus        76 ~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I  111 (188)
T 3srt_A           76 NIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQI  111 (188)
T ss_dssp             TEEECTTEEECTTEEEECSSCEEECSSCEECTTCEE
T ss_pred             CeEECCcccccCceEEecCCceEECCeeEECCCcEE
Confidence            4568889999999999876   78999999999998

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=87.90  E-value=0.32  Score=53.11  Aligned_cols=16  Identities=25%  Similarity=0.266  Sum_probs=6.8

Q ss_pred             EceeCCCeEECCCcEE
Q 002861          226 DSNISSGIQIGSLSIV  241 (873)
Q Consensus       226 ~s~l~~~v~IG~~~ii  241 (873)
                      +|+|++++.|+.+++|
T Consensus       163 ~~~IG~~~~I~~g~~I  178 (341)
T 3eh0_A          163 EIQIGQNCLIQSGTVV  178 (341)
T ss_dssp             TCEECSSCEECTTCEE
T ss_pred             CCEECCccEEcCCcEE
Confidence            3444444444444444

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=87.72  E-value=0.6  Score=48.63  Aligned_cols=35  Identities=17%  Similarity=0.057  Sum_probs=19.5

Q ss_pred             eeeecCCceeCCCcEEE-------------EceeCCCeEECCCcEEeC
Q 002861          209 SSKIAHGVSIGEDSLIY-------------DSNISSGIQIGSLSIVVG  243 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve-------------~s~l~~~v~IG~~~iisg  243 (873)
                      +++|+.+|.|+++++|.             +++|++++.||++|.|..
T Consensus        53 ~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~  100 (262)
T 2qia_A           53 HTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHR  100 (262)
T ss_dssp             EEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSCEECTTCEEEC
T ss_pred             CcEECCCCEEecceEECcCCccccccCCccceEECCCceeCCCCEEcC
Confidence            34555555555555554             455555555555555543

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=87.70  E-value=0.43  Score=51.14  Aligned_cols=34  Identities=12%  Similarity=0.165  Sum_probs=22.9

Q ss_pred             eeeecCCceeCCCcEEE-----EceeCCCeEECCCcEEe
Q 002861          209 SSKIAHGVSIGEDSLIY-----DSNISSGIQIGSLSIVV  242 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve-----~s~l~~~v~IG~~~iis  242 (873)
                      ++.|+.+|.|+++++|.     +++|++++.||++|.|.
T Consensus        55 ~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~~a~Ig   93 (305)
T 3t57_A           55 NTELGESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVVG   93 (305)
T ss_dssp             SEEECTTCEECTTCEECCSSSEEEEECSSCEECTTCEEE
T ss_pred             CcEECCCcEEccCcEeccCCCCceEECCceEECCccEeC
Confidence            55666666666666665     57777777777777773

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=87.69  E-value=0.34  Score=50.97  Aligned_cols=32  Identities=16%  Similarity=0.280  Sum_probs=18.6

Q ss_pred             eeecCCceeCCCcEEE-EceeCCCeEECCCcEE
Q 002861          210 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIV  241 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~ii  241 (873)
                      ++|+++|.|+++++|. +|+|.+++.||++|.|
T Consensus        26 ~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I   58 (270)
T 1j2z_A           26 CVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEI   58 (270)
T ss_dssp             CEECTTCEECTTCEECTTCEECSEEEECTTCEE
T ss_pred             CEECCCCEECCCCEEcCCcEEeCCeEEcCCCEE
Confidence            4555555556666653 4555556666666666

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=87.58  E-value=0.4  Score=51.69  Aligned_cols=15  Identities=13%  Similarity=0.248  Sum_probs=6.0

Q ss_pred             eecCCceeCCCcEEE
Q 002861          211 KIAHGVSIGEDSLIY  225 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve  225 (873)
                      ++..++.||++++|.
T Consensus       170 ~I~~g~~IG~~~~I~  184 (316)
T 3tk8_A          170 YTNIGAYVDEGTMVD  184 (316)
T ss_dssp             EECTTCEECTTCEEC
T ss_pred             EEeCCCEECCCCEEc
Confidence            333344444444333

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=87.38  E-value=0.48  Score=49.65  Aligned_cols=35  Identities=9%  Similarity=0.124  Sum_probs=21.3

Q ss_pred             eeeecCCceeCCCcEE--------------EEceeCCCeEECCCcEEeC
Q 002861          209 SSKIAHGVSIGEDSLI--------------YDSNISSGIQIGSLSIVVG  243 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~V--------------e~s~l~~~v~IG~~~iisg  243 (873)
                      ++.|+.++.|+++++|              ..+.|++++.||++|.|..
T Consensus        52 ~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~  100 (266)
T 3r0s_A           52 DTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINS  100 (266)
T ss_dssp             SCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTCEEEC
T ss_pred             CcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEECCceEecC
Confidence            3556666666666666              3566666666666666653

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=87.36  E-value=0.47  Score=48.23  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=12.9

Q ss_pred             ceeCCCeEECCCcEEe-CcCCCCC
Q 002861          227 SNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       227 s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      ++|+++|.||.+|+|. |+.|..+
T Consensus       120 v~IG~~v~IG~~a~I~~gv~IG~g  143 (220)
T 4hur_A          120 IEIGNDVWIGRDVTIMPGVKIGDG  143 (220)
T ss_dssp             EEECSSCEECTTCEECTTCEECTT
T ss_pred             eEECCCcEECCCCEEeCCCEECCC
Confidence            4566666666666664 3444443

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=87.14  E-value=0.37  Score=47.65  Aligned_cols=31  Identities=23%  Similarity=0.425  Sum_probs=15.2

Q ss_pred             eecCCceeCCCcEE-EEceeCCCeEECCCcEE
Q 002861          211 KIAHGVSIGEDSLI-YDSNISSGIQIGSLSIV  241 (873)
Q Consensus       211 vl~~~v~v~~~s~V-e~s~l~~~v~IG~~~ii  241 (873)
                      +|.+++.|+++++| .+|+|.+++.||++|.|
T Consensus        29 ~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I   60 (192)
T 3mqg_A           29 HICGGAEIGEGCSLGQNVFVGNRVRIGNRVKI   60 (192)
T ss_dssp             EECTTCEECTTCEECTTCEECSSCEECSSCEE
T ss_pred             EECCCcEECCCCEECCCEEECCceEECCCcEE
Confidence            34444445555554 34444445555555555

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=87.14  E-value=0.44  Score=49.92  Aligned_cols=34  Identities=29%  Similarity=0.355  Sum_probs=25.3

Q ss_pred             eeeecCCceeCCCcEEE-EceeCCCeEECCCcEEe
Q 002861          209 SSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV  242 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iis  242 (873)
                      +..|+.++.|+++++|. ++.|++++.|+.+|.|.
T Consensus        34 ~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~   68 (266)
T 3r0s_A           34 DAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVG   68 (266)
T ss_dssp             TCEECTTCEECTTCEECSSCEECTTCEECTTCEEE
T ss_pred             CCEECCCCEEcCCeEEeCCcEECCCcEEccCceec
Confidence            45567777777777777 67888888888888884

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=87.12  E-value=0.79  Score=48.46  Aligned_cols=16  Identities=25%  Similarity=0.075  Sum_probs=6.9

Q ss_pred             eeecCCceeCCCcEEE
Q 002861          210 SKIAHGVSIGEDSLIY  225 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve  225 (873)
                      ++|+.++.|++++.|.
T Consensus       101 v~IG~~~~Ig~~~~I~  116 (283)
T 4eqy_A          101 LVIGDRNTIREFTTIH  116 (283)
T ss_dssp             EEECSSCEECTTEEEE
T ss_pred             EEECCCcccCcceeEc
Confidence            3444444444444443

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=87.07  E-value=0.54  Score=49.76  Aligned_cols=35  Identities=14%  Similarity=0.145  Sum_probs=21.6

Q ss_pred             eeeecCCceeCCCcEE-------------EEceeCCCeEECCCcEEeC
Q 002861          209 SSKIAHGVSIGEDSLI-------------YDSNISSGIQIGSLSIVVG  243 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~V-------------e~s~l~~~v~IG~~~iisg  243 (873)
                      ++.|+.+|.|+++++|             .+++|++++.||++|.|..
T Consensus        70 ~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~  117 (283)
T 4eqy_A           70 HTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFTTIHT  117 (283)
T ss_dssp             EEEECSSCEECTTEEEEECCCCTTCCCCCCEEEECSSCEECTTEEEEC
T ss_pred             CcEECCCcEEcCCcEECCCCccccccCCCceEEECCCcccCcceeEcc
Confidence            3556666666666666             3566666666666666653

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=86.90  E-value=0.34  Score=48.12  Aligned_cols=34  Identities=18%  Similarity=0.215  Sum_probs=19.9

Q ss_pred             eecCCceeCCCcEEEE----ceeCCCeEECCCcEEeCc
Q 002861          211 KIAHGVSIGEDSLIYD----SNISSGIQIGSLSIVVGT  244 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve~----s~l~~~v~IG~~~iisg~  244 (873)
                      .|+++|.|+++++|..    .+|++++.|+++|.|.+.
T Consensus        32 ~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~   69 (194)
T 3tv0_A           32 TIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINA   69 (194)
T ss_dssp             EECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEEC
T ss_pred             EECCCCEECCCCEEccCCCCeEECCCccccCCcccccc
Confidence            4555555555555542    356666777777766543

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=86.65  E-value=0.45  Score=50.99  Aligned_cols=50  Identities=8%  Similarity=0.087  Sum_probs=24.6

Q ss_pred             ecCCceeCCCcEEE-EceeCCCeEECCCcEEe-----CcCCCCCCCCCccCccceeeCCCeeeeee
Q 002861          212 IAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV-----GTNFPEEAGSTAEDSFRFMLPDRHCLWEV  271 (873)
Q Consensus       212 l~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iis-----g~~i~~~~~~~~~~~~~~~iP~~~~i~~v  271 (873)
                      |+.++.|+++++|. ++.|++++.|+.+++|.     ++.|.++          +.|.+++++..-
T Consensus        40 IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~----------~~Ig~~a~Ig~~   95 (305)
T 3t57_A           40 LGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCN----------NIIGHHAVVGVK   95 (305)
T ss_dssp             ECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSS----------CEECTTCEEEEC
T ss_pred             ECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCc----------eEECCccEeCcc
Confidence            33333333333333 44444444444444444     3555554          777777766433

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=86.59  E-value=0.58  Score=48.99  Aligned_cols=32  Identities=25%  Similarity=0.452  Sum_probs=14.5

Q ss_pred             eeecCCceeCCCcEE-EEceeCCCeEECCCcEE
Q 002861          210 SKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIV  241 (873)
Q Consensus       210 Svl~~~v~v~~~s~V-e~s~l~~~v~IG~~~ii  241 (873)
                      ++|+.++.|+.++.| ++|.|++++.||.++.|
T Consensus        89 ~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i  121 (273)
T 3fs8_A           89 TIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDI  121 (273)
T ss_dssp             CEECTTCEECSSCEECSSCEECSSCEECTTCEE
T ss_pred             CEECCCCEECCceEECCCCEECCCCEECcccee
Confidence            344444444444444 24444444444444444

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=86.35  E-value=0.61  Score=48.57  Aligned_cols=35  Identities=11%  Similarity=0.209  Sum_probs=25.4

Q ss_pred             eeeecCCceeCCCcEEE-EceeCCCeEECCCcEEeC
Q 002861          209 SSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVG  243 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg  243 (873)
                      ++.|+.+|.|+++++|. ++.|++++.|+.+|.|..
T Consensus        35 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~   70 (262)
T 2qia_A           35 HVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGE   70 (262)
T ss_dssp             TEEECTTCEECSSCEECSEEEECSSCEECTTCEEEE
T ss_pred             CCEECCCcEECCCCEECCCcEECCCCEEecceEECc
Confidence            45677777777777776 677777788888777753

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=86.24  E-value=0.75  Score=46.43  Aligned_cols=35  Identities=11%  Similarity=0.112  Sum_probs=29.8

Q ss_pred             eeecCCceeCCCcEE----EEceeCCCeEECCCcEEeCc
Q 002861          210 SKIAHGVSIGEDSLI----YDSNISSGIQIGSLSIVVGT  244 (873)
Q Consensus       210 Svl~~~v~v~~~s~V----e~s~l~~~v~IG~~~iisg~  244 (873)
                      ++|+.+|.|++.+++    ..++|++++.||.+|.|...
T Consensus        80 ~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~  118 (215)
T 2wlg_A           80 LQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNT  118 (215)
T ss_dssp             EEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESC
T ss_pred             EEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECC
Confidence            788999999986666    67889999999999999864

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=86.07  E-value=0.8  Score=47.90  Aligned_cols=40  Identities=20%  Similarity=0.234  Sum_probs=26.6

Q ss_pred             eeecCCceeCCCcEE-EEceeCCCeEECCCcEEe-CcCCCCC
Q 002861          210 SKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVV-GTNFPEE  249 (873)
Q Consensus       210 Svl~~~v~v~~~s~V-e~s~l~~~v~IG~~~iis-g~~i~~~  249 (873)
                      ++|+.++.|+++++| .+++|++++.||.+++|. ++.|..+
T Consensus        71 ~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~I~~~~~Ig~~  112 (273)
T 3fs8_A           71 LIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNN  112 (273)
T ss_dssp             EEECTTCEECTTCEEESSCEECTTCEECSSCEECSSCEECSS
T ss_pred             eEECCCCEECCCCEEeCCCEECCCCEECCceEECCCCEECCC
Confidence            567777777777777 367777777777777774 5555443

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=85.74  E-value=0.77  Score=45.69  Aligned_cols=35  Identities=17%  Similarity=0.268  Sum_probs=29.1

Q ss_pred             eeeecCCceeCCCcEEEEc---eeCCCeEECCCcEEeC
Q 002861          209 SSKIAHGVSIGEDSLIYDS---NISSGIQIGSLSIVVG  243 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve~s---~l~~~v~IG~~~iisg  243 (873)
                      +..|+.++.|+.+++|.++   +|+++|.||.+|.|..
T Consensus        76 ~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~  113 (195)
T 3nz2_A           76 TIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYT  113 (195)
T ss_dssp             TEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEEC
T ss_pred             CeEECCCcEECcCCEEecCceEEECCCCEECCCCEEec
Confidence            3568888888999998766   7899999999998865

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=85.74  E-value=0.76  Score=49.39  Aligned_cols=31  Identities=13%  Similarity=0.169  Sum_probs=19.3

Q ss_pred             ceeCCCeEECCCcEEeC-cCCCCCCCCCccCccceeeCCCee
Q 002861          227 SNISSGIQIGSLSIVVG-TNFPEEAGSTAEDSFRFMLPDRHC  267 (873)
Q Consensus       227 s~l~~~v~IG~~~iisg-~~i~~~~~~~~~~~~~~~iP~~~~  267 (873)
                      ++|+++|.||.||+|.+ +.|.++          +.|..|++
T Consensus       224 ~~IGd~v~IGaga~Ilggv~IG~~----------a~IGagsv  255 (313)
T 3q1x_A          224 PTVGDYVTIGTGAKVLGNIIVGSH----------VRIGANCW  255 (313)
T ss_dssp             CEECSSCEECTTCEEESSCEECSS----------EEECTTCE
T ss_pred             CEECCCCEECCCCEECCCcEECCC----------CEECCCCE
Confidence            36777777777776653 555554          56666553

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=85.14  E-value=1  Score=46.92  Aligned_cols=16  Identities=13%  Similarity=-0.022  Sum_probs=7.4

Q ss_pred             ceeCCCeEECCCcEEe
Q 002861          227 SNISSGIQIGSLSIVV  242 (873)
Q Consensus       227 s~l~~~v~IG~~~iis  242 (873)
                      ++|++++.||++|.|.
T Consensus        80 v~IG~~~~Ig~~~~I~   95 (259)
T 3hsq_A           80 TVIGDHNIFREYSNIH   95 (259)
T ss_dssp             EEECSSCEECTTCEEE
T ss_pred             EEECCCcEECCCCEEC
Confidence            4444444444444444

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=85.12  E-value=0.75  Score=50.72  Aligned_cols=30  Identities=10%  Similarity=0.248  Sum_probs=21.1

Q ss_pred             ceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCee
Q 002861          227 SNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHC  267 (873)
Q Consensus       227 s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~  267 (873)
                      ++|+++|.||.+|+ .|+.|..+          ++|..|++
T Consensus       291 VvIGdnv~IGagAv-~GV~IGdg----------avIGAGsV  320 (387)
T 2rij_A          291 ISVGKACLLGANSV-TGIPLGDN----------CIVDAGIA  320 (387)
T ss_dssp             CEECTTCEECTTCE-ECSCBCTT----------CEECTTCE
T ss_pred             eEEeCCCEECCCCc-CCcEECCC----------CEECCCCE
Confidence            56777777777777 77777666          77777764

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=85.11  E-value=0.96  Score=47.92  Aligned_cols=10  Identities=30%  Similarity=0.385  Sum_probs=4.6

Q ss_pred             CCCcccCcch
Q 002861          296 KDGTFCGKPW  305 (873)
Q Consensus       296 ~~~t~~g~~~  305 (873)
                      .+.++.|.|=
T Consensus       255 ~~svvvG~PA  264 (287)
T 3mc4_A          255 HNVTVAGVPA  264 (287)
T ss_dssp             TTEEEETTTT
T ss_pred             CCCEEEccCC
Confidence            3344555543

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=84.83  E-value=1.2  Score=46.33  Aligned_cols=15  Identities=20%  Similarity=0.195  Sum_probs=6.1

Q ss_pred             eeecCCceeCCCcEE
Q 002861          210 SKIAHGVSIGEDSLI  224 (873)
Q Consensus       210 Svl~~~v~v~~~s~V  224 (873)
                      ++|+.++.|++++.|
T Consensus        86 ~~IG~~~~Ig~~~~I  100 (265)
T 4e6u_A           86 LEIGNNNLIREHCSL  100 (265)
T ss_dssp             EEECSSCEECTTCEE
T ss_pred             EEECCCeEECCceEE
Confidence            334444444444444

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=84.75  E-value=0.74  Score=48.34  Aligned_cols=34  Identities=29%  Similarity=0.491  Sum_probs=23.5

Q ss_pred             eeecCCceeCCCcEEE-EceeCCCeEECCCcEEeC
Q 002861          210 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVG  243 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg  243 (873)
                      .+|+.+|.|+.+++|. .++|++++.||.|++|.+
T Consensus       190 ~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~~  224 (267)
T 1ssq_A          190 PKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLN  224 (267)
T ss_dssp             CEECTTCEECTTCEEESSCEECTTCEECTTCEECS
T ss_pred             eEECCCeEEcCCCEEeCCcEECCCCEECCCCEEcc
Confidence            4677777777777775 466777777777777653

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=84.21  E-value=0.79  Score=47.72  Aligned_cols=30  Identities=20%  Similarity=0.176  Sum_probs=12.0

Q ss_pred             ecCCceeCCCcEEEE-ceeCCCeEECCCcEE
Q 002861          212 IAHGVSIGEDSLIYD-SNISSGIQIGSLSIV  241 (873)
Q Consensus       212 l~~~v~v~~~s~Ve~-s~l~~~v~IG~~~ii  241 (873)
                      |+.+|.|+++++|.. +.|++++.|+.+|.|
T Consensus        33 IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I   63 (259)
T 3hsq_A           33 IQEGTIIEGHVKICAGSEIGKFNRFHQGAVI   63 (259)
T ss_dssp             ECTTCEECTTCEECTTEEECSSCEECTTCEE
T ss_pred             ECCCCEEcCCcEEcCCcEECCCcEECCCCEE
Confidence            333333333333332 334444444444444

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=83.95  E-value=0.88  Score=45.88  Aligned_cols=15  Identities=27%  Similarity=0.275  Sum_probs=8.9

Q ss_pred             eeecCCceeCCCcEE
Q 002861          210 SKIAHGVSIGEDSLI  224 (873)
Q Consensus       210 Svl~~~v~v~~~s~V  224 (873)
                      ..|+.+|.|+++++|
T Consensus        59 v~IG~~~~I~~~v~i   73 (212)
T 3eev_A           59 LVIGSFCSIGSGAVF   73 (212)
T ss_dssp             EEECSSCEECTTCEE
T ss_pred             cEECCCCEECCCCEE
Confidence            345666666666655

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=83.79  E-value=0.24  Score=52.11  Aligned_cols=75  Identities=19%  Similarity=0.142  Sum_probs=51.8

Q ss_pred             CCCceEEEEEecC-ccccccceE--EEeCCCCCcccccccccccceeecCCH-HH--HhhcCcccCCCccceeeceeeec
Q 002861           17 PEDASCIITVPIT-LDIASNHGV--IVAAKDGILNENYALSLVDDLLQKPNV-DE--LAKNHAILDDGRALLDTGIIAVR   90 (873)
Q Consensus        17 ~~a~vtv~a~p~~-~~~a~~hGV--~~~d~~~~~~~~~~~~~v~~fl~KPs~-~~--l~~~~a~~~~~~~l~~~Gi~~f~   90 (873)
                      +++++++++.|++ ++...+.++  ++.|++|         ++..|-+||-. +.  ... ..-..+...+..+|+|.|+
T Consensus       135 ~~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~g---------~~l~fsr~~ip~~r~~~~~-~~~~~~~~~~~~~GiY~y~  204 (264)
T 3k8d_A          135 RQVGMATLAVPIHNAEEAFNPNAVKVVLDAEG---------YALYFSRATIPWDRDRFAE-GLETVGDNFLRHLGIYGYR  204 (264)
T ss_dssp             SSCSEEEEEEECCSHHHHTCTTSCEEEECTTS---------BEEEEESSCCSCCHHHHHH-CSSCCCSCCEEECSEEEEE
T ss_pred             cCCCEEEEEEEcCCHHHccCCCceEEEECCCC---------eEEEEecCCCCCCCccccc-cccccCCcceEEEEEEEEC
Confidence            6789999999985 555665554  3468887         79999999853 21  100 0000123468899999999


Q ss_pred             chHHHHHHhhh
Q 002861           91 GKAWEELVMLS  101 (873)
Q Consensus        91 ~~~~~~ll~~~  101 (873)
                      .++++++..+.
T Consensus       205 ~~~l~~~~~~~  215 (264)
T 3k8d_A          205 AGFIRRYVNWQ  215 (264)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHhCC
Confidence            99999887643

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=83.75  E-value=1  Score=44.61  Aligned_cols=35  Identities=9%  Similarity=0.060  Sum_probs=28.7

Q ss_pred             eeeecCCceeCCCcEEEE---ceeCCCeEECCCcEEeC
Q 002861          209 SSKIAHGVSIGEDSLIYD---SNISSGIQIGSLSIVVG  243 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~Ve~---s~l~~~v~IG~~~iisg  243 (873)
                      +..|+.++.|+++++|.+   ..|++++.||.+|.|..
T Consensus        78 ~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~  115 (190)
T 3hjj_A           78 NIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYT  115 (190)
T ss_dssp             TEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEEC
T ss_pred             ceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEec
Confidence            456888999999999984   46899999999999854

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=83.69  E-value=1.1  Score=48.19  Aligned_cols=32  Identities=19%  Similarity=0.257  Sum_probs=22.0

Q ss_pred             eecCCceeCCCcEEE-EceeCCCeEECCCcEEe
Q 002861          211 KIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV  242 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iis  242 (873)
                      +|+.+|.|+++++|. .++|++++.||.|++|+
T Consensus       253 ~IGd~V~IGaga~Il~gv~IGd~a~IGagsvV~  285 (310)
T 3f1x_A          253 ILEDDVIVYSNATILGRVTIGKGATVGGNIWVT  285 (310)
T ss_dssp             EECTTCEECTTCEEESSCEECTTCEECSSCEEC
T ss_pred             EECCCcEEcCCCEECCCcEECCCCEECCCCEEC
Confidence            577777777777776 66666666666666664

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=81.60  E-value=1.2  Score=47.33  Aligned_cols=33  Identities=36%  Similarity=0.601  Sum_probs=21.3

Q ss_pred             eeecCCceeCCCcEEE-EceeCCCeEECCCcEEe
Q 002861          210 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV  242 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iis  242 (873)
                      ++|+.+|.|++++.|. .+.|++++.||.|++|.
T Consensus       210 ~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~  243 (289)
T 1t3d_A          210 PKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVL  243 (289)
T ss_dssp             CEECTTCEECTTCEEESSCEECTTCEECTTCEEC
T ss_pred             eEECCCeEECCCCEEecCcEECCCCEECCCCEEc
Confidence            4677777777776665 35566666666666664

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=81.19  E-value=1.7  Score=45.30  Aligned_cols=41  Identities=15%  Similarity=0.082  Sum_probs=28.8

Q ss_pred             eeeecCCceeCCCcEE-EEceeCCCeEECCCcEEeC-cCCCCC
Q 002861          209 SSKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVVG-TNFPEE  249 (873)
Q Consensus       209 ~Svl~~~v~v~~~s~V-e~s~l~~~v~IG~~~iisg-~~i~~~  249 (873)
                      +++|+.+|.|++++.| .+|+|++++.|+.++.|.+ +.|..+
T Consensus       110 ~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~  152 (265)
T 4e6u_A          110 LTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDH  152 (265)
T ss_dssp             EEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSS
T ss_pred             ceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCC
Confidence            3777888888888877 6677777777777777765 555443

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=80.18  E-value=1.6  Score=43.15  Aligned_cols=30  Identities=27%  Similarity=0.473  Sum_probs=21.1

Q ss_pred             cCCceeCCCcEEE-EceeCCCeEECCCcEEe
Q 002861          213 AHGVSIGEDSLIY-DSNISSGIQIGSLSIVV  242 (873)
Q Consensus       213 ~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iis  242 (873)
                      ...++||+++||. +|+|.++++||++|+|-
T Consensus       128 ~~~v~IGd~v~IG~~~~I~~gv~IG~~~vIg  158 (185)
T 2p2o_A          128 GKPVVIGHNVWIGGRAVINPGVTIGDNAVIA  158 (185)
T ss_dssp             ECCEEECSSCEECTTCEECTTCEECTTCEEC
T ss_pred             cCCeEEcCCeEECCCCEECCCCEECCCCEEC
Confidence            4567777777775 56667777777777776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	873
d1k47a2	135	d.58.26.4 (A:195-329) Phosphomevalonate kinase (PM	9e-18
d1kvka2	169	d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Ratt	9e-15
d1kkha2	137	d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon	5e-14
d1s4ea1	176	d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococ	1e-12
d1piea1	205	d.14.1.5 (A:9-213) Galactokinase {Lactococcus lact	6e-07
d1wuua1	215	d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapi	9e-05
d1s4ea2	171	d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyro	1e-04
d1piea2	183	d.58.26.7 (A:214-396) Galactokinase {Lactococcus l	0.003

>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Phosphomevalonate kinase (PMK)
domain: Phosphomevalonate kinase (PMK)
species: Streptococcus pneumoniae r6 [TaxId: 171101]

 Score = 78.2 bits (192), Expect = 9e-18
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 729 ELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDE 788
            L+   LV +T +V ++  ++Q++      + N+  + +    E   +  +AL     ++
Sbjct: 3   TLECDFLVGWTKEVAVSSHMVQQI------KQNINQNFLTSSKETVVSLVEALEQGKSEK 56

Query: 789 LGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESAT 848
           + + +  A +L + L        + +L   +       K  GAGGG   + L+ DA+S  
Sbjct: 57  IIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGIALSFDAQSTK 116

Query: 849 ELRRMLEK 856
            L+     
Sbjct: 117 TLKNRWAD 124

>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Mevalonate kinase
domain: Mevalonate kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.8 bits (173), Expect = 9e-15
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 9/144 (6%)

Query: 733 RLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGR-------DALMNCD 785
           ++L+  T   R    ++  V +R ++   ++   +  +  ++            A +   
Sbjct: 6   QILLTNTKVPRSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQ 65

Query: 786 VDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAE 845
              L ++M         L     +  +D+L      +    KL GAGGGG  + L K   
Sbjct: 66  YLVLEELMDMNQHHLNALG--VGHASLDQLCQVTAAHGLHSKLTGAGGGGCGITLLKPGL 123

Query: 846 SATELRRMLEKDSNFNSEVYNWNI 869
              ++    +  +    + +  +I
Sbjct: 124 ERAKVEAAKQALTGCGFDCWETSI 147

>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 137

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Mevalonate kinase
domain: Mevalonate kinase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 67.7 bits (165), Expect = 5e-14
 Identities = 29/134 (21%), Positives = 65/134 (48%), Gaps = 11/134 (8%)

Query: 734 LLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIM 793
           L+V    + +   +++ +V    ++  + +   I ++ +      +AL   + ++ GK+M
Sbjct: 14  LIVYAEKRKKKTAELVNEV--AKIENKDEIFKEIDKVID------EALKIKNKEDFGKLM 65

Query: 794 LEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESATELRRM 853
            +   L ++L+   S   +DR+    + +  G KL GAGGGG  ++L  + +    L+ +
Sbjct: 66  TKNHELLKKLN--ISTPKLDRIVDIGNRFGFGAKLTGAGGGGCVIILVNEEKEKELLKEL 123

Query: 854 LEKDSN-FNSEVYN 866
            ++D   FN  + N
Sbjct: 124 NKEDVRIFNCRMMN 137

>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 176

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 64.9 bits (157), Expect = 1e-12
 Identities = 41/194 (21%), Positives = 73/194 (37%), Gaps = 21/194 (10%)

Query: 528 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDD 587
           TVK   P R++  G  +D         G V+ +AI L       TII   K   V +  +
Sbjct: 1   TVKS--PGRVNLIGEHTDYT------YGYVMPMAIDL------YTIITAEKYDKVQLYSE 46

Query: 588 AGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGL 647
             N+     L  +       D  + V        V+ ++  +  GL+ +   ++P G+GL
Sbjct: 47  HFNEEKTFTLDNLTKEGSWIDYVKGVLW------VLIQEGYKIGGLKGKITGDLPLGAGL 100

Query: 648 GTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LMGTGGGWQDQIGGLYPGIKFTS 706
            +S+     +++ L Q+ + +      A L    E   +G   G  DQ   ++       
Sbjct: 101 SSSASFEVGILEVLNQLYNLNIDPLKKALLAKKAENEFVGVPCGILDQFAVVFGKKDNVI 160

Query: 707 SFPGIPLRLQVIPL 720
                 L+ + IP 
Sbjct: 161 FLDTQTLQYEYIPF 174

>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 205

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

 Score = 48.7 bits (115), Expect = 6e-07
 Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 12/188 (6%)

Query: 534 PVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLH 593
           P RI+  G  +D         G V   +I++ +    G           L S++      
Sbjct: 26  PGRINLIGEHTDYNG------GYVFPASITIGT---TGLARLREDKKVKLYSENFPKLGV 76

Query: 594 IEDLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSIL 653
           IE         D       VK  +++      ++ +  G ++     +P  SGL +S+ L
Sbjct: 77  IEFDLDEVEKKDGELWSNYVKGMIVMLKGAGYEIDK--GFELLIKGEIPTASGLSSSASL 134

Query: 654 AAAVVKALLQITDGDQSNENVARLVLLLEQ-LMGTGGGWQDQIGGLYPGIKFTSSFPGIP 712
              V   L  + + +     + +L    E   +G   G  DQ    +  +K         
Sbjct: 135 ELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNT 194

Query: 713 LRLQVIPL 720
           L+ +++P+
Sbjct: 195 LKYEMVPV 202

>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 9e-05
 Identities = 36/188 (19%), Positives = 60/188 (31%), Gaps = 10/188 (5%)

Query: 534 PVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLH 593
           P R++  G  +D         G VL +A+ L + L              L++   G    
Sbjct: 34  PGRVNLIGEHTDYN------QGLVLPMALELMTVL---VGSPRKDGLVSLLTTSEGADEP 84

Query: 594 IEDLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSIL 653
                P+ T     +P     +  +   + +       G      ++VP G GL +S+ L
Sbjct: 85  QRLQFPLPTAQRSLEPGTPRWANYVKGVIQYYPAAPLPGFSAVVVSSVPLGGGLSSSASL 144

Query: 654 AAAVVKALLQITDGDQSNENVARLVLLLEQ-LMGTGGGWQDQIGGLYPGIKFTSSFPGIP 712
             A    L Q+     +    A++    E    G   G  DQ   L              
Sbjct: 145 EVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRS 204

Query: 713 LRLQVIPL 720
           L   ++PL
Sbjct: 205 LETSLVPL 212

>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Galactokinase
domain: Galactokinase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 764 ISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFA-DPY 822
            S I R        RDAL   D++++GKI+  A       +   S E +D     A +  
Sbjct: 58  FSYIVRENARVLEVRDALKEGDIEKVGKILTTAHWD-LAENYRVSCEELDFFVKKAMELG 116

Query: 823 CCGYKLVGAGGGGFALLLAKDAESATELRRMLEK 856
             G +L GAG GG A+ L    ++ T    +L +
Sbjct: 117 AYGARLTGAGFGGSAIALVDKDKAKTIGDAILRE 150

>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 183

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Galactokinase
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 771 TELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLF--AFADPYCCGYKL 828
               K  + A +  ++ + G+++  +    ++ D   +   +D L   A       G ++
Sbjct: 74  NNRTKIAQKAFVAGNLTKFGELLNASHASLKD-DYEVTGLELDTLAETAQKQAGVLGARM 132

Query: 829 VGAGGGGFALLLAKDAE 845
            GAG GG A+ L     
Sbjct: 133 TGAGFGGCAIALVAHDN 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	873
d1piea1	205	Galactokinase {Lactococcus lactis [TaxId: 1358]}	99.96
d1s4ea1	176	Galactokinase {Archaeon Pyrococcus furiosus [TaxId	99.95
d1wuua1	215	Galactokinase {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1kkha1	180	Mevalonate kinase {Archaeon Methanococcus jannasch	99.93
d1kvka1	225	Mevalonate kinase {Rat (Rattus norvegicus) [TaxId:	99.85
d1h72c1	163	Homoserine kinase {Archaeon Methanococcus jannasch	99.79
d1k47a1	194	Phosphomevalonate kinase (PMK) {Streptococcus pneu	99.78
d1k47a2	135	Phosphomevalonate kinase (PMK) {Streptococcus pneu	99.75
d1kvka2	169	Mevalonate kinase {Rat (Rattus norvegicus) [TaxId:	99.74
d1kkha2	137	Mevalonate kinase {Archaeon Methanococcus jannasch	99.67
d1wuua2	176	Galactokinase {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1s4ea2	171	Galactokinase {Archaeon Pyrococcus furiosus [TaxId	99.58
d1piea2	183	Galactokinase {Lactococcus lactis [TaxId: 1358]}	99.54
d1oj4a1	163	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	99.25
d1ueka1	148	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	99.12
d1fxoa_	292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	98.37
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	98.16
d1h72c2	133	Homoserine kinase {Archaeon Methanococcus jannasch	98.12
d1yp2a2	307	Glucose-1-phosphate adenylyltransferase small subu	97.9
d1ueka2	120	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	97.59
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	97.53
d1fi4a1	188	Mevalonate 5-diphosphate decarboxylase {Baker's ye	97.52
d1mc3a_	291	RffH {Escherichia coli [TaxId: 562]}	97.36
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	97.22
d2cu2a2	268	Putative mannose-1-phosphate guanylyl transferase	97.14
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	96.35
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	96.11
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	94.33
d1oj4a2	120	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	93.68
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	90.3
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	90.17
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	89.25
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	88.02
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	86.91
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	86.1
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	85.71
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	85.5
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	84.62
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	84.36
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	84.35
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	82.38
d1fi4a2	203	Mevalonate 5-diphosphate decarboxylase {Baker's ye	81.69

>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

Probab=99.96  E-value=3.6e-28  Score=248.08  Aligned_cols=179  Identities=18%  Similarity=0.196  Sum_probs=142.5

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCce--eeecCCCCCCCCCC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQL--HIEDLTPIATPFDH  606 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~--~~~~l~~l~~p~~~  606 (873)
                      ..++|||||+|+|||+||.      ||.|+++||+++.+    +.++++++..+++.+......  ...+..++.. ...
T Consensus        21 ~~~~aPgRv~L~GeH~Dy~------gg~vl~~AI~~~~~----v~~~~~~d~~i~i~s~~~~~~~~~~~~~~~~~~-~~~   89 (205)
T d1piea1          21 EYFFSPGRINLIGEHTDYN------GGYVFPASITIGTT----GLARLREDKKVKLYSENFPKLGVIEFDLDEVEK-KDG   89 (205)
T ss_dssp             EEEEEEEEEEEECCSCTTT------TCEEEEEEEEEEEE----EEEEECSSSEEEEEETTCGGGCCEEEETTCTTS-CCT
T ss_pred             eEEEcceEEEEecCCeeEC------CCEeecccccceEE----EEEecCCCCeeeeecCCCCccceeecccccccc-ccc
Confidence            5778999999999999996      99999999999987    788899888999987654422  2223334332 234


Q ss_pred             CChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-Hc
Q 002861          607 NDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LM  685 (873)
Q Consensus       607 ~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~-~~  685 (873)
                      ..|.+|+++++..+...  ......||+|.+.++||.|+|||||||+++|++.|++++++.++++.+++++|+++|+ ++
T Consensus        90 ~~~~~~~~~~i~~l~~~--~~~~~~G~~i~i~s~iP~gsGLgSSAAl~va~~~al~~~~~~~~~~~~ia~~a~~~E~~~~  167 (205)
T d1piea1          90 ELWSNYVKGMIVMLKGA--GYEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYI  167 (205)
T ss_dssp             TCTHHHHHHHHHHHHHT--TCCCCSCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             cchhHHHHHHHHHHHHh--CCccccCeEEEEecCCccccccCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhc
Confidence            56999999998876421  1223479999999999999999999999999999999999999999999999999998 58


Q ss_pred             CCCChhhhhHhhcccCeeEEecCCCCcceeEEEee
Q 002861          686 GTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPL  720 (873)
Q Consensus       686 g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl  720 (873)
                      |++||+|||+++++||.+.+.+.+..+.+++..|+
T Consensus       168 g~~~G~~Dq~as~~g~~~~~~~~d~~~~~~~~ip~  202 (205)
T d1piea1         168 GVNSGILDQFAIGFGEVKKAIELDCNTLKYEMVPV  202 (205)
T ss_dssp             CCCCCSHHHHHHHHCBTTEEEEEETTTCCEEEEEC
T ss_pred             CCCCcHHHHHHHHhcCCCeEEEEECCCCcEEecCc
Confidence            99999999999999996543333333334444443

>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.95  E-value=2.7e-28  Score=242.97  Aligned_cols=174  Identities=21%  Similarity=0.198  Sum_probs=129.5

Q ss_pred             EEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCCh
Q 002861          530 KVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDP  609 (873)
Q Consensus       530 ~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~~  609 (873)
                      +|+|||||+|+|||+||.      ||.|+++||+++++    +++++.++  +.+..+........++.++   ....+|
T Consensus         1 tv~aPgRi~l~GeH~Dy~------gg~vl~~AI~~~~~----v~~~~~~~--~~i~~~~~~~~~~~~~~~~---~~~~~~   65 (176)
T d1s4ea1           1 TVKSPGRVNLIGEHTDYT------YGYVMPMAIDLYTI----ITAEKYDK--VQLYSEHFNEEKTFTLDNL---TKEGSW   65 (176)
T ss_dssp             CEEEEEEEESSCCSCGGG------TCEECEEEEEEEEE----EC----CC--BCCCBTTTTC-C---CC-C---CCCSST
T ss_pred             CcccCEEEEEEccCeeeC------CCEEEeEEeeeEEE----EEEEcccc--eEEEeccCCcceeeeeccc---cccccc
Confidence            489999999999999986      99999999999876    55655543  3333333222222333333   234578


Q ss_pred             hHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HcCCC
Q 002861          610 FRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LMGTG  688 (873)
Q Consensus       610 ~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~-~~g~~  688 (873)
                      .+++++++..+.   .......||+|.+.|+||.|+|||||||+++|++.|++++++.++++++++++|+.+|+ ++|++
T Consensus        66 ~~~~~~~~~~~~---~~~~~~~g~~i~i~s~iP~gsGLgSSAAl~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~g~~  142 (176)
T d1s4ea1          66 IDYVKGVLWVLI---QEGYKIGGLKGKITGDLPLGAGLSSSASFEVGILEVLNQLYNLNIDPLKKALLAKKAENEFVGVP  142 (176)
T ss_dssp             HHHHHHHHHHHH---HTTCCCCCBC-CEEESSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSCCC
T ss_pred             hhheehhhhhhh---hhcccCCCeEEEEecCcccCccccchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCC
Confidence            888888776553   12345579999999999999999999999999999999999999999999999999998 57999


Q ss_pred             ChhhhhHhhcccCeeEEecCCCCcceeEEEeecCC
Q 002861          689 GGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLAS  723 (873)
Q Consensus       689 ~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~  723 (873)
                      ||+|||+++++||...+.+.+..+.  +++++++|
T Consensus       143 ~G~~Dq~~~~~gg~~~~~~~d~~~~--~~~~i~~P  175 (176)
T d1s4ea1         143 CGILDQFAVVFGKKDNVIFLDTQTL--QYEYIPFP  175 (176)
T ss_dssp             CCSHHHHHHHHCCTTEEEEEETTTT--EEEEEECC
T ss_pred             cchHHHHHHHhcCCCEEEEEeCCCC--CEEecCCC
Confidence            9999999999999765444444333  45666665

>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.6e-26  Score=232.93  Aligned_cols=179  Identities=20%  Similarity=0.168  Sum_probs=137.5

Q ss_pred             eEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCc--e--eeecCCCCCCC
Q 002861          528 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQ--L--HIEDLTPIATP  603 (873)
Q Consensus       528 ~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~--~--~~~~l~~l~~p  603 (873)
                      .+.++|||||+|+|||+||.      ||.|+++||+++++    +.++++++..+++.+.....  .  ...++......
T Consensus        28 ~~i~~APGrv~L~GEH~dy~------Gg~vl~~Ai~~~~~----v~~~~~~d~~i~v~s~~~~~~~~~~~~~~~~~~~~~   97 (215)
T d1wuua1          28 ELAVSAPGRVNLIGEHTDYN------QGLVLPMALELMTV----LVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRS   97 (215)
T ss_dssp             SEEEEEEEEEEEECTTCGGG------TCEEEEEEEEEEEE----EEEEEETTCEEEEEECCSSSCSCSEEEEECCCSSCC
T ss_pred             CEEEEcceEEEEecCCeeeC------CceEEeeeccCcEE----EEEEecCCCEEEEEEccCCCCcceEEeecccccccc
Confidence            48899999999999999996      99999999999998    78899999999887633221  1  11111111111


Q ss_pred             --CCCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 002861          604 --FDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLL  681 (873)
Q Consensus       604 --~~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~  681 (873)
                        .....|..+++..+....     .....|+++.+.|+||.|+|||||||+++|++.|++++++..+++++++++|+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~-----~~~~~g~~i~i~S~iP~gaGLgSSAA~~val~~al~~~~~~~~~~~~la~~a~~~  172 (215)
T d1wuua1          98 LEPGTPRWANYVKGVIQYYP-----AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQA  172 (215)
T ss_dssp             CCCCSSGGGHHHHHHHHHCS-----SSCCCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhhHhhhc-----cCCCCCeEEEEecCcccCcccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence              123457888877665432     2245789999999999999999999999999999999999999999999999999


Q ss_pred             HH-HcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeec
Q 002861          682 EQ-LMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLL  721 (873)
Q Consensus       682 E~-~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~  721 (873)
                      |+ ++|++||+|||+++++|+...+.+.+..+++++..|++
T Consensus       173 E~~~~G~~~G~mDq~as~~g~~~~~~~id~~~~~~~~vp~~  213 (215)
T d1wuua1         173 EHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLS  213 (215)
T ss_dssp             HHHHTCCCCCSHHHHHHHHCCTTEEEEEETTTCCEEEEECC
T ss_pred             HHHhcCCCCcHHHHHHHHhCCCCeEEEEECCCCcEEeecCC
Confidence            99 68999999999999999954333333333444444443

>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate kinase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.93  E-value=5.5e-25  Score=219.43  Aligned_cols=173  Identities=18%  Similarity=0.210  Sum_probs=133.9

Q ss_pred             CCCCeEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCC
Q 002861          524 FQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATP  603 (873)
Q Consensus       524 ~~~~~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p  603 (873)
                      |.+.++.++|||||+|+|||+|+.      ||.|+++||+++.+    +.++++++..+.+.+.........+++++...
T Consensus         1 ~~~~~~~~~aPgkv~L~GEh~~~~------G~~~l~~aI~~~~~----v~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   70 (180)
T d1kkha1           1 PRGSHMIIETPSKVILFGEHAVVY------GYRAISMAIDLTST----IEIKETQEDEIILNLNDLNKSLGLNLNEIKNI   70 (180)
T ss_dssp             CTTCCEEEEEEEEEEEECTTGGGG------TCCEEEEEEEEEEE----EEEEECCSSEEEEEETTTTEEEEEETTTGGGC
T ss_pred             CCCCeEEEEcCEEEEEEccCeEEc------CCEEEEEEEeCEEE----EEEEECCCCCcceeeecccceeeecchhcccc
Confidence            356789999999999999999985      99999999999987    88889888888888765544333344443321


Q ss_pred             C-CCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 002861          604 F-DHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLE  682 (873)
Q Consensus       604 ~-~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E  682 (873)
                      . ....+..++.+++...-. ........||++++.++||.|+|||||||+++|++.+++++++.++++++++++|+++|
T Consensus        71 ~~~~~~~~~~~~~~i~~~~~-~~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~l~~~~l~~la~~~E  149 (180)
T d1kkha1          71 NPNNFGDFKYCLCAIKNTLD-YLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVE  149 (180)
T ss_dssp             CGGGSGGGHHHHHHHHHHHH-HTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred             CccchhhHHHHHHHHHHHHH-HhCCCCCCCEEEEEeccchhhcCccccchhHHHHHHHHHHHhCcCCCHHHHHHHHHHHH
Confidence            1 112234455444433210 00122346999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCChhhhhHhhcccCeeEEec
Q 002861          683 QLMGTGGGWQDQIGGLYPGIKFTSS  707 (873)
Q Consensus       683 ~~~g~~~G~~Dq~~~~~GG~~~~~~  707 (873)
                      +..+..+|++||+++++||+.++++
T Consensus       150 ~~~~g~~sg~D~~~~~~Gg~i~~~~  174 (180)
T d1kkha1         150 KEIQGKASITDTSTITYKGILEIKN  174 (180)
T ss_dssp             HHHSSSCCSHHHHHHHHCSEEEESS
T ss_pred             HHhCCCCCHHHHHHHHhCCEEEEeC
Confidence            9654445668999999999998874

>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=2.4e-21  Score=199.53  Aligned_cols=169  Identities=20%  Similarity=0.242  Sum_probs=122.3

Q ss_pred             CeEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCC-----C
Q 002861          527 RTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPI-----A  601 (873)
Q Consensus       527 ~~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l-----~  601 (873)
                      +.+.|+|||||+|+|||+|+.      ||.|+++||+++++    +.++++++..+++.+.+.......++.+.     .
T Consensus         4 ~~~~vsAPGKv~L~GEh~v~~------G~~al~~ai~~~~~----v~v~~~~~~~v~i~s~~~~~~~~~~~~~~~~~~~~   73 (225)
T d1kvka1           4 EVLLVSAPGKVILHGEHAVVH------GKVALAVALNLRTF----LVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDTG   73 (225)
T ss_dssp             SCEEEEEEEEEEEECTTGGGG------TCCEEEEEEEEEEE----EEEEECSSSEEEEEETTTTEEEEEEHHHHHTSCC-
T ss_pred             CeEEEEeceEEEEEeCceeec------CCCEEEEEecccEE----EEEEECCCCeEEEEECCCCcceEEecccccccccc
Confidence            458899999999999999995      99999999999998    88999988889888755443221111000     0


Q ss_pred             -----------------------CCCCCCChhHHHHHHHH-HhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHH
Q 002861          602 -----------------------TPFDHNDPFRLVKSALL-VTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAV  657 (873)
Q Consensus       602 -----------------------~p~~~~~~~~~~kaal~-~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~  657 (873)
                                             .+.+..........++. .............|+++.+.+++|.|+|||||||+++|+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~lP~g~GLGSSAAl~va~  153 (225)
T d1kvka1          74 FLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCV  153 (225)
T ss_dssp             ---------------CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSCTTSSSCHHHHHHHHH
T ss_pred             cccccccCcchhhhhhhHhhhhccccccchhhhhHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCCcccccchHHHHHH
Confidence                                   00000000000000010 001111123456799999999999999999999999999


Q ss_pred             HHHHHHHhCCCC---------------CHHHHHHHHHHHHHH-cCCCChhhhhHhhcccCeeEEe
Q 002861          658 VKALLQITDGDQ---------------SNENVARLVLLLEQL-MGTGGGWQDQIGGLYPGIKFTS  706 (873)
Q Consensus       658 l~Al~~~~g~~l---------------s~~eL~~la~~~E~~-~g~~~G~~Dq~~~~~GG~~~~~  706 (873)
                      +.|++.+++...               ++++|+++|+.+|.. .|.+|| +||++++|||+.+++
T Consensus       154 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lA~~~E~~~~g~~SG-~D~a~~~~Gg~i~f~  217 (225)
T d1kvka1         154 AAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSG-VDNSVSTWGGALRYQ  217 (225)
T ss_dssp             HHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCS-HHHHHHHHCSEEEES
T ss_pred             HHHHHHHhCcccCccccchhccccchhhHHHHHHHHHHHHHHhCCCCcH-HHHHHHhcCceEEEe
Confidence            999999999854               357899999999995 588999 699999999998775

>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Homoserine kinase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.79  E-value=1.8e-18  Score=168.95  Aligned_cols=150  Identities=17%  Similarity=0.205  Sum_probs=118.2

Q ss_pred             eEEEEeceEEEeecccccCCCcccCCCCeEEEeeeec-ccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCC
Q 002861          528 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISL-ESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDH  606 (873)
Q Consensus       528 ~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l-~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~  606 (873)
                      ++++++|+.+.++|.++|.           +++|++. |.+    +++++.++..+.+..+..         .+  |.++
T Consensus         2 ~i~v~~Pas~aNlg~GFD~-----------lg~Al~~~~d~----v~v~~~~~~~i~i~~~~~---------~i--~~~~   55 (163)
T d1h72c1           2 KVRVKAPCTSANLGVGFDV-----------FGLCLKEPYDV----IEVEAIDDKEIIIEVDDK---------NI--PTDP   55 (163)
T ss_dssp             EEEEEEEEEEECTGGGTTT-----------EEEEEEEEEEE----EEEEEESSSSEEEEESCT---------TS--CCCT
T ss_pred             EEEEEEeccHHhccccHhH-----------hhhhhcCCccE----EEEEECCCCeEEEEecCc---------cc--CCch
Confidence            5899999999999999998           8999985 676    788888887777765422         12  2221


Q ss_pred             CChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-c
Q 002861          607 NDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL-M  685 (873)
Q Consensus       607 ~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~-~  685 (873)
                      .+  +++..++..+.   +.+....|++|++.++||.|+|||||||.++|++.|+++++++++++++++++|.++|.. .
T Consensus        56 ~~--n~~~~~~~~~~---~~~~~~~~~~i~i~~~IP~gaGLGsSSA~a~a~l~aln~l~~~~ls~~~l~~~A~~~e~~~~  130 (163)
T d1h72c1          56 DK--NVAGIVAKKMI---DDFNIGKGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASS  130 (163)
T ss_dssp             TT--SHHHHHHHHHH---HHTTCCCEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             hh--hhHHHHHHHHH---HhcCCCCCEEEEEeeccccccccCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhc
Confidence            12  24555544432   123345789999999999999999999999999999999999999999999999999974 5


Q ss_pred             CCCChhhhhHhhcccCeeEEecCC
Q 002861          686 GTGGGWQDQIGGLYPGIKFTSSFP  709 (873)
Q Consensus       686 g~~~G~~Dq~~~~~GG~~~~~~~~  709 (873)
                      +.+.| +|.+++++||+++....+
T Consensus       131 g~~~g-ddv~~~~~GG~~~~~~~~  153 (163)
T d1h72c1         131 GAKHA-DNVAPAIFGGFTMVTNYE  153 (163)
T ss_dssp             SSCCC-TTHHHHHHCSEEEEEETT
T ss_pred             CCCCc-hHhHHHhhCCEEEEecCC
Confidence            66666 788899999999887654

>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Phosphomevalonate kinase (PMK)
species: Streptococcus pneumoniae r6 [TaxId: 171101]

Probab=99.78  E-value=1.6e-18  Score=174.10  Aligned_cols=160  Identities=16%  Similarity=0.146  Sum_probs=121.5

Q ss_pred             EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 002861          529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND  608 (873)
Q Consensus       529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~  608 (873)
                      +.++||||+.|+|||+...     .|+.++.+||+++.+    +++++.++..+........    .   ++    ..+.
T Consensus         2 i~v~apGK~iL~GE~aVv~-----~G~~ala~ai~~~~~----v~v~~~~~~~i~~~~~~~~----~---~~----~~~~   61 (194)
T d1k47a1           2 IAVKTCGKLYWAGEYAILE-----PGQLALIKDIPIYMR----AEIAFSDSYRIYSDMFDFA----V---DL----RPNP   61 (194)
T ss_dssp             EEEEEEEEEEEECTTGGGS-----TTCEEEEEEEEEEEE----EEEEECSSCEEEEEC--------------------CC
T ss_pred             eEEEeCcEEEEEeeeEEec-----CCCeEEEEEEeceEE----EEEEECCCceEEeeccccc----c---cc----ccCc
Confidence            7899999999999998761     278899999999987    7888887766655432111    0   01    1112


Q ss_pred             hhHHHHHHHHHhh-hhhhccccccCEEEEEeeccCCCC---CCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 002861          609 PFRLVKSALLVTG-VIHEKLIESMGLQIRTWANVPRGS---GLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL  684 (873)
Q Consensus       609 ~~~~~kaal~~~~-~~~~~~~~~~G~~i~i~s~IP~Gs---GLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~  684 (873)
                      +..+++.++..+. .+........|+++.+.+++|.++   |||||||+++|++.|++++++..+++++|+++|..+|+.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~ip~~~~~~GLGSSAA~~va~~~al~~~~~~~ls~~~i~~lA~~~e~~  141 (194)
T d1k47a1          62 DYSLIQETIALMGDFLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLK  141 (194)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCCCEEEEEESHHHHSTTSSCSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHcCCCCCCeEEEEEccCccccCCCcccchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence            3445665554432 122233456799999999999998   999999999999999999999999999999999999996


Q ss_pred             c-CCCChhhhhHhhcccCeeEEecCC
Q 002861          685 M-GTGGGWQDQIGGLYPGIKFTSSFP  709 (873)
Q Consensus       685 ~-g~~~G~~Dq~~~~~GG~~~~~~~~  709 (873)
                      . |.++| +|++++.|||+.+++..+
T Consensus       142 ~~g~~SG-~D~a~s~~GG~i~y~~~~  166 (194)
T d1k47a1         142 RGDNGSM-GDLACIAAEDLVLYQSFD  166 (194)
T ss_dssp             TTCCSCC-HHHHHHHHTSCEEEECCC
T ss_pred             hccCCCc-cchhHHHcCCeEEEEeCC
Confidence            5 66666 799999999998887543

>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Phosphomevalonate kinase (PMK)
domain: Phosphomevalonate kinase (PMK)
species: Streptococcus pneumoniae r6 [TaxId: 171101]

Probab=99.75  E-value=2.7e-18  Score=162.33  Aligned_cols=123  Identities=20%  Similarity=0.214  Sum_probs=110.4

Q ss_pred             cCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCCh
Q 002861          730 LQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSN  809 (873)
Q Consensus       730 ~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~  809 (873)
                      ++.+|+|+|||.+++|++++.++.+.+   .   .+.++++.+++.++.+||.++|++.|+++|+++|++++.+...+++
T Consensus         4 l~~~lll~~TG~~~sT~~lv~~v~~~~---~---~~~l~~~~~~v~~~~~al~~~d~~~l~~~m~~~~~ll~~l~~~i~~   77 (135)
T d1k47a2           4 LECDFLVGWTKEVAVSSHMVQQIKQNI---N---QNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYT   77 (135)
T ss_dssp             SCCEEEEEECCCCCCCHHHHHHHHTTC---C---HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred             CCceEEEEecCCcccHHHHHHHHHHHH---H---hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccCCC
Confidence            567999999999999999998875432   1   2457788888999999999999999999999999999999878899


Q ss_pred             HHHHHHHHHHccCCceEEecCCCccceeEEEeCCcchHHHHHHHHHhcC
Q 002861          810 EFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDS  858 (873)
Q Consensus       810 p~l~~l~~~a~~ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~~  858 (873)
                      |++++|++.+++++.++|++|||||||+++|+++++.++++.++|++.+
T Consensus        78 ~~l~~l~~~a~~~g~~ak~~GaGgGG~~i~l~~~~~~~~~i~~~~~~~G  126 (135)
T d1k47a2          78 PLLRQLKEASQDLQAVAKSSGAGGGDCGIALSFDAQSTKTLKNRWADLG  126 (135)
T ss_dssp             HHHHHHHHTTTTSSEEEEECSSCSSSEEEEEECSHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHhccchhcccCcCCCeEEEEecChhhHHHHHHHHHHCC
Confidence            9999999999987778999999999999999998888999999999874

>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Mevalonate kinase
domain: Mevalonate kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=1.2e-17  Score=163.67  Aligned_cols=137  Identities=17%  Similarity=0.181  Sum_probs=111.4

Q ss_pred             CcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHh-------ccCHHHHHHHHHHHHHHHhhh
Q 002861          731 QQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALM-------NCDVDELGKIMLEAWRLHQEL  803 (873)
Q Consensus       731 ~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~-------~gd~~~lg~lm~~~~~~~~~l  803 (873)
                      +.+++|+|||++|+|++++.++.+.+..++..+...++++.+++.++.+.+.       .+|+..||++|+++|.+++.+
T Consensus         4 ~l~lll~~Tgv~r~T~~~v~~V~~~~~~~~~~~~~~l~~~~~l~~~a~~~l~~~~~~~~~~d~~~lg~lm~~~~~lL~~l   83 (169)
T d1kvka2           4 ALQILLTNTKVPRSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNAL   83 (169)
T ss_dssp             CEEEEEEECCCCCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCcchHHHHHHHHHHHHHhChHHHHHHHHHHhHHHHHHHHHhhhhhhhcccchHHHHHHHHHHhHHHHHhc
Confidence            4589999999999999999998777666655555566777777777776654       478999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHccCCceEEecCCCccceeEEEeCCcch---HHHHHHHHHhcCCCceEEEEEeeccC
Q 002861          804 DPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAES---ATELRRMLEKDSNFNSEVYNWNIYLE  872 (873)
Q Consensus       804 ~~~vs~p~l~~l~~~a~~ga~G~klsGAGgGG~v~~l~~~~~~---a~~i~~~L~~~~~~~v~v~~~~i~~~  872 (873)
                      .  +++|+++.|+++++++++|+|+||||+|||+++|+++...   .+++.+.|+..   +.++|.++|+.+
T Consensus        84 g--VS~~~ld~lv~~a~~~g~gaKltGAGgGGc~ial~~~~~~~~~~~~i~~~l~~~---Gf~~~~~~i~~~  150 (169)
T d1kvka2          84 G--VGHASLDQLCQVTAAHGLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGC---GFDCWETSIGAP  150 (169)
T ss_dssp             T--CCCHHHHHHHHHHHHTTCEEEECSSCSSSEEEEEECTTCCHHHHHHHHHHHHHT---TCEEEEEEESCC
T ss_pred             C--cChHHHHHHHHHHHHcCccccccCCCCCCeEEEEecccchHHHHHHHHHHHHHc---CCeEEEEecCCC
Confidence            4  9999999999999986689999999999999999997433   35666667664   346788888654

>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Mevalonate kinase
domain: Mevalonate kinase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.67  E-value=1.7e-16  Score=149.35  Aligned_cols=124  Identities=24%  Similarity=0.450  Sum_probs=101.8

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHH
Q 002861          733 RLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFV  812 (873)
Q Consensus       733 ~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l  812 (873)
                      .+++.+++.+|+|.+++.+|.+. . +..   ..++++..++   .+||..+|++.||++|+++|.+++.+  ++++|++
T Consensus        13 ~Lv~~~t~~~~~t~~~v~~v~~~-~-~~~---~i~~~~~~~~---~~al~~~d~~~lg~lm~~~~~~l~~l--gvs~~~i   82 (137)
T d1kkha2          13 FLIVYAEKRKKKTAELVNEVAKI-E-NKD---EIFKEIDKVI---DEALKIKNKEDFGKLMTKNHELLKKL--NISTPKL   82 (137)
T ss_dssp             EEEEEEECCCSCHHHHHHHHHTC-T-THH---HHHHHHHHHH---HHHHHCCSHHHHHHHHHHHHHHHHTT--TCCCHHH
T ss_pred             EEEEEccCccchHHHHHHHHHHH-H-hhh---HHHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHHHHHh--cCCcHHH
Confidence            56777999999999999987442 1 112   2344444443   46789999999999999999999998  4999999


Q ss_pred             HHHHHHHccCCceEEecCCCccceeEEEeCCcchHHHHHHHHHhcCCCceEEEEEeec
Q 002861          813 DRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNSEVYNWNIY  870 (873)
Q Consensus       813 ~~l~~~a~~ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~~~~~v~v~~~~i~  870 (873)
                      +.|++.+.+.++|+|+||||+|||+++|+++ +.++++.+.|.+.   +.++|+++|.
T Consensus        83 d~l~~~~~~~g~GaKitGAGgGG~~ial~~~-~~~~~~~~~l~~~---~~~~f~~~~~  136 (137)
T d1kkha2          83 DRIVDIGNRFGFGAKLTGAGGGGCVIILVNE-EKEKELLKELNKE---DVRIFNCRMM  136 (137)
T ss_dssp             HHHHHHHHHHSSEEEECSSSSSEEEEEECCG-GGHHHHHHHHHTS---SCEEEEECBC
T ss_pred             HHHHHHHHhcCCCcccccCCCCcEEEEEeCh-hhHHHHHHHHHHc---CchheeeecC
Confidence            9999999985589999999999999999986 6788899999876   5679988874

>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Galactokinase
domain: Galactokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.3e-15  Score=145.17  Aligned_cols=96  Identities=21%  Similarity=0.238  Sum_probs=87.0

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc--CCceEEecCCCccceeEEEeCCcchHHHH
Q 002861          773 LAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP--YCCGYKLVGAGGGGFALLLAKDAESATEL  850 (873)
Q Consensus       773 ~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~--ga~G~klsGAGgGG~v~~l~~~~~~a~~i  850 (873)
                      .+.++.+|++++|++.||++|+++|.++++.+ ++++|++|.|++.+.+  |++|+||+|||||||+++|+++ +..+++
T Consensus        71 Rv~~~~~al~~~d~~~lg~Lm~~sh~sL~~~~-~vS~peld~lv~~a~~~~G~lGaRltGaGfGGcviaLv~~-~~~~~~  148 (176)
T d1wuua2          71 RTAQAAAALRRGDYRAFGRLMVESHRSLRDDY-EVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEA-SAAPHA  148 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTS-CCCCHHHHHHHHHHHTSTTEEEEEECSSCSEEEEEEEEEG-GGHHHH
T ss_pred             hhHHHHHHhhccCHHHHHHHHHHHHHHHHHHH-hccChhHHHHHHHHHhcCCCceeeeccCCCCcEEEEEech-hhHHHH
Confidence            36778899999999999999999999999877 4999999999999886  8899999999999999999986 778999


Q ss_pred             HHHHHhcCCCceEEEEEeec
Q 002861          851 RRMLEKDSNFNSEVYNWNIY  870 (873)
Q Consensus       851 ~~~L~~~~~~~v~v~~~~i~  870 (873)
                      .+.+++.++....+|.+++.
T Consensus       149 ~~~~~~~yg~~~~~~~~~~~  168 (176)
T d1wuua2         149 MRHIQEHYGGTATFYLSQAA  168 (176)
T ss_dssp             HHHHHHHCSSCCEEEEECCC
T ss_pred             HHHHHHHhCCCCCEEEEecC
Confidence            99999987788888988774

>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Galactokinase
domain: Galactokinase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.58  E-value=1.5e-14  Score=140.65  Aligned_cols=96  Identities=25%  Similarity=0.256  Sum_probs=84.0

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcchHHHHHH
Q 002861          774 AKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAESATELRR  852 (873)
Q Consensus       774 ~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~  852 (873)
                      +.++.+||+++|++.||++|+++|.++++.+ ++++|+++.|++.+.+ |++|+||+|+|+|||+++|+++ +..+++.+
T Consensus        68 v~~~~~al~~~d~~~~G~lm~~sh~sl~~~~-evS~~eld~lv~~a~~~Ga~GaRmtGgGfGG~viaLv~~-~~~~~~~~  145 (171)
T d1s4ea2          68 VLEVRDALKEGDIEKVGKILTTAHWDLAENY-RVSCEELDFFVKKAMELGAYGARLTGAGFGGSAIALVDK-DKAKTIGD  145 (171)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHTTCSEEEECSSCSEEEEEEEEEG-GGHHHHHH
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHHHHHhh-ccCCHHHHHHHHHHhhcccCceeeecCCCCcEEEEEecH-HHHHHHHH
Confidence            6789999999999999999999999988877 4999999999999986 9999999999999999999996 67777777


Q ss_pred             HHHh----cCCCceEEEEEeecc
Q 002861          853 MLEK----DSNFNSEVYNWNIYL  871 (873)
Q Consensus       853 ~L~~----~~~~~v~v~~~~i~~  871 (873)
                      .+.+    .++..+.+|.+.+..
T Consensus       146 ~i~~~y~~~~~~~~~~~~~~p~~  168 (171)
T d1s4ea2         146 AILREYLAKFSWKAKYFVVKPSD  168 (171)
T ss_dssp             HHHHHHHHHCCSCCEEEEECBCC
T ss_pred             HHHHHHHHhcCCCCCEEEEecCC
Confidence            6654    456788999888753

>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Galactokinase
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

Probab=99.54  E-value=3.5e-14  Score=139.50  Aligned_cols=105  Identities=17%  Similarity=0.244  Sum_probs=86.5

Q ss_pred             HHHHHHHH--HHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc--CCceEEecCCCccceeEEE
Q 002861          765 SSIKRLTE--LAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP--YCCGYKLVGAGGGGFALLL  840 (873)
Q Consensus       765 ~~~~~i~~--~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~--ga~G~klsGAGgGG~v~~l  840 (873)
                      +..+-+.+  .+.++.+||+++|++.||++|+++|.++++.+ ++++|++|.|++.+.+  |++|+||+|+|+|||+++|
T Consensus        66 Ra~Hvv~En~Rv~~a~~al~~~d~~~~G~lm~~Sh~sl~~~~-evs~~elD~Lv~~a~~~~G~~GaRmtGgGfGGcvial  144 (183)
T d1piea2          66 RARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDY-EVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIAL  144 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTS-CCCCHHHHHHHHHHHHSTTEEEEEECSSCSSSEEEEE
T ss_pred             HHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHHhCCCeEeeccccCCCceEEEE
Confidence            44444443  47788999999999999999999999988877 4999999999999863  8999999999999999999


Q ss_pred             eCCcchHHHHHHHHHh----cCCCceEEEEEeecc
Q 002861          841 AKDAESATELRRMLEK----DSNFNSEVYNWNIYL  871 (873)
Q Consensus       841 ~~~~~~a~~i~~~L~~----~~~~~v~v~~~~i~~  871 (873)
                      ++. +.++++.+.+++    .++..+.+|.+++..
T Consensus       145 v~~-~~~~~~~~~i~~~y~~~~g~~~~~~~~~~~~  178 (183)
T d1piea2         145 VAH-DNVSAFRKAVGQVYEEVVGYPASFYVAQIGS  178 (183)
T ss_dssp             EEG-GGHHHHHHHHHHHHHHHHSSCCEEEECCBCC
T ss_pred             ecH-HHHHHHHHHHHHHHHHhhCCCCcEEEEecCC
Confidence            996 667777766654    356678899888753

>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=3.5e-11  Score=116.07  Aligned_cols=149  Identities=19%  Similarity=0.193  Sum_probs=102.5

Q ss_pred             EEEEeceEEEee---cc-cccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCC
Q 002861          529 VKVELPVRIDFA---GG-WSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPF  604 (873)
Q Consensus       529 v~v~aP~Rv~L~---G~-~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~  604 (873)
                      ....|||||||.   ++ -.|  +|   |.=..+.+.|+++.+    +++++.++..+.+.....         ..   .
T Consensus         3 ~~~~apAKINL~L~V~~kr~d--gy---H~i~S~~~~i~l~D~----i~i~~~~~~~~~~~~~~~---------~~---~   61 (163)
T d1oj4a1           3 TQWPSPAKLNLFLYITGQRAD--GY---HTLQTLFQFLDYGDT----ISIELRDDGDIRLLTPVE---------GV---E   61 (163)
T ss_dssp             EEEEEEEEEEEEEEEEEECTT--SC---EEEEEEEEEEEEEEE----EEEEEESSSCEEECSCBT---------TB---C
T ss_pred             cCCccCEeEEeeEEeCCcCCC--Cc---ceEEEEEEEecCCcE----EEEEeccccceeEecCcc---------CC---c
Confidence            566899999998   22 112  22   344678889999987    677776666555532110         11   0


Q ss_pred             CCCChhHHHHHHHHHhhh--hhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 002861          605 DHNDPFRLVKSALLVTGV--IHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLE  682 (873)
Q Consensus       605 ~~~~~~~~~kaal~~~~~--~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E  682 (873)
                      ..++  ...++.......  ....+....+++|+++++||.|+|||++||.++|++.+++++++.+++.+++..+|..+.
T Consensus        62 ~~~n--~~~k~~~~l~~~~~~~~~~~~~~~~~I~i~KnIP~gaGLGGGSsnAAa~L~~l~~~~~~~l~~~~l~~ia~~iG  139 (163)
T d1oj4a1          62 HEDN--LIVRAARLLMKTAADSGRLPTGSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLG  139 (163)
T ss_dssp             GGGS--HHHHHHHHHHHHHHHTTCSCTTCEEEEEEECCSCSSTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHGGGC
T ss_pred             cccc--hHHHHHHHHHHHhhhhhhcccCCceEEEEEeeeeecccccCCCchHHHHHHHhhcccccCCCHHHHHHHHHHcC
Confidence            1111  133333222111  011223346899999999999999999999999999999999999999999999986653


Q ss_pred             HHcCCCChhhhhHhhcccCeeEEecCC
Q 002861          683 QLMGTGGGWQDQIGGLYPGIKFTSSFP  709 (873)
Q Consensus       683 ~~~g~~~G~~Dq~~~~~GG~~~~~~~~  709 (873)
                               .|+..++.||..+.....
T Consensus       140 ---------sDvpffl~~~~a~~~G~G  157 (163)
T d1oj4a1         140 ---------ADVPVFVRGHAAFAEGVG  157 (163)
T ss_dssp             ---------TTHHHHHHCBCEEEETTT
T ss_pred             ---------CcccccccCCCEEEEEcC
Confidence                     299999999998887654

>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
species: Thermus thermophilus [TaxId: 274]

Probab=99.12  E-value=4.5e-10  Score=106.04  Aligned_cols=142  Identities=22%  Similarity=0.215  Sum_probs=97.3

Q ss_pred             EEEeceEEEee----cccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCC
Q 002861          530 KVELPVRIDFA----GGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFD  605 (873)
Q Consensus       530 ~v~aP~Rv~L~----G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~  605 (873)
                      +..|||+|||.    |-..|-  |   |.=..+.+.|+++++    +++++.++ .+.+..                |.+
T Consensus         2 ~~~aPAKINL~L~V~~kr~dG--y---H~l~s~~~~i~l~D~----i~i~~~~~-~~~~~~----------------p~~   55 (148)
T d1ueka1           2 ERLAPAKVNLGLSVRFRREDG--Y---HELHTLFAPFSLADR----LVVEPVSS-GLHFQG----------------PYG   55 (148)
T ss_dssp             EEEEEEEEEEEEEEEEECTTS--S---EEEEEEEEEEEEEEE----EEEEEESS-CEEEES----------------TTG
T ss_pred             cccccceEeeeEeeCccCCCC--c---ceeeEEEEEEECccc----cEEEcccc-cccccc----------------ccc
Confidence            45799999998    444441  2   455678899999998    66766543 233321                211


Q ss_pred             CCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHc
Q 002861          606 HNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM  685 (873)
Q Consensus       606 ~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~  685 (873)
                      +   -+++.-|+..+.   +......+++|++.++||.|+||||+||.++|++.+++++++.+.+   +.++|..+    
T Consensus        56 ~---~Nlv~ka~~~l~---~~~~~~~~~~I~i~K~IP~~aGLGGGSsnAAa~l~~l~~~~~~~~~---l~~la~~i----  122 (148)
T d1ueka1          56 R---ENLAYRAASLYL---EAAGQPGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEVD---LFALARTL----  122 (148)
T ss_dssp             G---GSHHHHHHHHHH---HHTTCCCEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCCC---HHHHHHHH----
T ss_pred             c---cchhhhhhhhhH---HhcCCCceEEEEEEeeEEEeeeccCCchhhhhHHHHHHHhhhhhhH---HHHhhccc----
Confidence            1   124433333332   2234457899999999999999999999999999999999998765   44455444    


Q ss_pred             CCCChhhhhHhhcccCeeEEecCCCCcceeEEEee
Q 002861          686 GTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPL  720 (873)
Q Consensus       686 g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl  720 (873)
                      |     .|+..++.|+..+......     +++|+
T Consensus       123 G-----sDVPffl~~~~~~~~G~Ge-----~l~pl  147 (148)
T d1ueka1         123 G-----ADVPFFLLGRGAEARGVGE-----RLKPL  147 (148)
T ss_dssp             C-----TTHHHHHHCSEEEEETTTT-----EEEEE
T ss_pred             C-----CCchhhccCCCEEEEEeCc-----EeEEC
Confidence            2     3999999999988876533     45665

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.37  E-value=6.3e-08  Score=101.76  Aligned_cols=74  Identities=12%  Similarity=0.114  Sum_probs=63.9

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      ++||+++.+|+.+|+.    ..+++|+++.+|+  ..++|||+.+|+++         ++..|.|||+.+          
T Consensus       107 l~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V~--~p~~yGV~~~d~~~---------ki~~~~EKP~~p----------  165 (292)
T d1fxoa_         107 LGDNLYYGHDFHELLGSASQRQTGASVFAYHVL--DPERYGVVEFDQGG---------KAISLEEKPLEP----------  165 (292)
T ss_dssp             ETTEEEECTTHHHHHHHHHTCCSSEEEEEEECS--CGGGSEEEEECTTS---------CEEEEEESCSSC----------
T ss_pred             EccccccCcCHHHHHHHHHhCCCCcEEEEEECC--CHHHCeEEEEcCCC---------CEeEEEECCCCC----------
Confidence            4789999999999987    7899999999874  35799999999988         899999999755          


Q ss_pred             CCccceeeceeeecchHHHH
Q 002861           77 DGRALLDTGIIAVRGKAWEE   96 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~~   96 (873)
                       -..++.||+|+|+.++++-
T Consensus       166 -~Snla~~G~Y~f~~~~~~~  184 (292)
T d1fxoa_         166 -KSNYAVTGLYFYDQQVVDI  184 (292)
T ss_dssp             -SSSEEEEEEEEECTTHHHH
T ss_pred             -CCCcEEEEEEEEChHHHHH
Confidence             3569999999999998753

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=98.16  E-value=1.2e-06  Score=80.99  Aligned_cols=68  Identities=15%  Similarity=0.126  Sum_probs=58.2

Q ss_pred             eeecCCCcccccccceeEEeeeecCCceeCCCcEEEEceeCCC-------------------eEECCCcEEeCcCCCCCC
Q 002861          190 LCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSG-------------------IQIGSLSIVVGTNFPEEA  250 (873)
Q Consensus       190 ~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~-------------------v~IG~~~iisg~~i~~~~  250 (873)
                      +.++.+.. +|++.++.+.+|+|+++|+|++++.|++|++.++                   +.||++|.|.+++|+++ 
T Consensus        12 i~~s~Ig~-g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~-   89 (135)
T d1yp2a1          12 VTDSVIGE-GCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKN-   89 (135)
T ss_dssp             EEEEEECT-TCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTT-
T ss_pred             EEeCEECC-CCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCC-
Confidence            44566655 5666778899999999999999999999998765                   78999999999999998 


Q ss_pred             CCCccCccceeeCCCeee
Q 002861          251 GSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       251 ~~~~~~~~~~~iP~~~~i  268 (873)
                               ++|++|+.+
T Consensus        90 ---------~~IG~g~~i   98 (135)
T d1yp2a1          90 ---------ARIGDNVKI   98 (135)
T ss_dssp             ---------CEECTTCEE
T ss_pred             ---------CEECCCcEE
Confidence                     999998855

>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Homoserine kinase
domain: Homoserine kinase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.12  E-value=5.5e-06  Score=76.20  Aligned_cols=114  Identities=15%  Similarity=0.137  Sum_probs=78.3

Q ss_pred             CcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH-HHH-HH-HHhhhCCCC
Q 002861          731 QQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIM-LEA-WR-LHQELDPHC  807 (873)
Q Consensus       731 ~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm-~~~-~~-~~~~l~~~v  807 (873)
                      +.+++++.|+..-+|++.....     ...-...+...++.. +..+..+|.++|++.+++.+ ++. |+ ....+    
T Consensus         2 ~l~~vl~~P~~~vsT~~aR~~L-----P~~~~~~dav~n~~~-~~~lv~al~~~d~~l~~~~~~~D~l~Ep~r~~l----   71 (133)
T d1h72c2           2 KLDILIAIPNISINTKEAREIL-----PKAVGLKDLVNNVGK-ACGMVYALYNKDKSLFGRYMMSDKVIEPVRGKL----   71 (133)
T ss_dssp             CCCEEEECCSSCCCHHHHHHTS-----CSCCCHHHHHHHHHH-HHHHHHHHHTTCHHHHHHHHTTCCSSHHHHHTT----
T ss_pred             eeEEEEEECCCCCcHHHHHHhc-----hhhCCHHHHHHhhhh-hHHHHHHHhccCHHHHHHHHhcCcccCceeccc----
Confidence            4578899998877776552211     000011223333333 33578899999999998754 432 33 23344    


Q ss_pred             ChHHHHHHHHHHccCCceEEecCCCccceeEEEeCCcchHHHHHHHHHhcC
Q 002861          808 SNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDS  858 (873)
Q Consensus       808 s~p~l~~l~~~a~~ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~~  858 (873)
                       .|+++++.+.++.|++|+.|||||+  ++++|+++ +.++++.+.|++..
T Consensus        72 -~P~~~~ik~~l~~ga~~~~lSGSGP--Tv~al~~~-~~~~~~~~~l~~~~  118 (133)
T d1h72c2          72 -IPNYFKIKEEVKDKVYGITISGSGP--SIIAFPKE-EFIDEVENILRDYY  118 (133)
T ss_dssp             -STTHHHHHHHHTTTEEEEEECTTSS--CEEEEECG-GGHHHHHHHHHHHC
T ss_pred             -CCchHHHHHHhhcCceEEEEeCCCC--cEEEEeCh-HHHHHHHHHHHHHH
Confidence             4788888887777999999999999  99999986 67889999998763

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=97.90  E-value=2.5e-06  Score=89.52  Aligned_cols=131  Identities=16%  Similarity=0.224  Sum_probs=94.0

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCc---
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHA---   73 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a---   73 (873)
                      +.||+++..|...|+.    +++++++....++.+.++.+||+.+|+++         +|..|.+||..+......+   
T Consensus       133 ~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvv~~d~~~---------~v~~~~Ek~~~~~~~~~~~~~~  203 (307)
T d1yp2a2         133 LAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG---------RIIEFAEKPQGEQLQAMKVDTT  203 (307)
T ss_dssp             ECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECTTS---------BEEEEEESCCHHHHHHTCCCGG
T ss_pred             ecCcceeccchhhhhhhhhhccccceEEEEecccccccccceEEECCCC---------cEEEEEECCCCccccccccccc
Confidence            4799999999988877    88999999999999999999999999888         8999999999865432110   


Q ss_pred             c-------cCCCccceeeceeeecchHHHHHHhhhc-CCchhhhhhhccccchhhhHHHHhhccc-ccccccccCCCc--
Q 002861           74 I-------LDDGRALLDTGIIAVRGKAWEELVMLSC-SCPPMVSELLKSGKEMSLYEDLVAAWVP-AKHDWLMLRPLG--  142 (873)
Q Consensus        74 ~-------~~~~~~l~~~Gi~~f~~~~~~~ll~~~~-~~~d~g~d~~~~~~~~~~y~df~~~~~~-~~~~Y~~~~pvg--  142 (873)
                      +       ......+.++|+|+|+.+.+.+++.... ..+++..|++  +..++.    ...... .-..||.|  +|  
T Consensus       204 ~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~~~~~d~i--~~li~~----g~~v~~~~~~g~W~D--igt~  275 (307)
T d1yp2a2         204 ILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI--PGATSL----GMRVQAYLYDGYWED--IGTI  275 (307)
T ss_dssp             GGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHH--HHHHHT----TCCEEEEECCSCCEE--CSSH
T ss_pred             ccccccchhhcccchhhCceEEECHHHHHHHhhhccccccchHHHHH--HHHHHC----CCcEEEEEeCCeEEE--CcCH
Confidence            0       1223458899999999999988887443 2345555555  222211    000111 23469999  87  


Q ss_pred             hhHHhh
Q 002861          143 KELVSK  148 (873)
Q Consensus       143 d~~~~~  148 (873)
                      ++|+++
T Consensus       276 ~~~~~a  281 (307)
T d1yp2a2         276 EAFYNA  281 (307)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            788886

>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
species: Thermus thermophilus [TaxId: 274]

Probab=97.59  E-value=1.8e-05  Score=71.29  Aligned_cols=115  Identities=14%  Similarity=0.023  Sum_probs=72.8

Q ss_pred             CcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChH
Q 002861          731 QQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNE  810 (873)
Q Consensus       731 ~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p  810 (873)
                      ..++||++++...+|+++.+............           ...+.+++..+++..+.+-+.   ....++     .|
T Consensus         3 pl~~vlv~P~~~vST~~~y~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~Ndle---~~~~~~-----~p   63 (120)
T d1ueka2           3 PVPAVVFFPGLRVPTPLVYRAVRPEDFGPDLP-----------VEAILEALARGEEPPYWNSLE---GPAFRL-----FP   63 (120)
T ss_dssp             CEEEEEEECCCCCCHHHHHHTCCGGGCCCCCC-----------HHHHHHHHHHTCCCSCCBTTH---HHHHHH-----CT
T ss_pred             CCeEEEECCCCCccHHHHHHHhchhcccccCC-----------HHHHHHHHHhhcHHHHhCchH---HHHHHH-----Hh
Confidence            35899999999999999876542211111110           012233333333322221111   112223     37


Q ss_pred             HHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhcCCCceEEEEEeec
Q 002861          811 FVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNSEVYNWNIY  870 (873)
Q Consensus       811 ~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~~~~~v~v~~~~i~  870 (873)
                      +++++.+.+++ |+.++.|||||+  ++|+++++.+.++++.+.|++..    ..|..+++
T Consensus        64 ~l~~~~~~l~~~g~~~~~mSGSGs--t~F~l~~~~~~a~~~~~~l~~~~----~~~~~~~~  118 (120)
T d1ueka2          64 ELKEVRGRMRALGLRGVLMSGSGS--AFFGLAEGPDHARRAAEALRAWG----RAWAGTLG  118 (120)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTSS--CEEEECSSHHHHHHHHHHHTTTS----EEEEEEEC
T ss_pred             hHHHHHHHHHHhhhhheeecCCCC--eEEEEeCCHHHHHHHHHHHHHhC----CeEEEEeC
Confidence            88999888887 889999999998  99999999889999999998753    34544443

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=5.5e-05  Score=62.56  Aligned_cols=49  Identities=22%  Similarity=0.412  Sum_probs=36.8

Q ss_pred             cccceeEE-eeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861          201 IAASAVVL-SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE  249 (873)
Q Consensus       201 i~~~~~V~-~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~  249 (873)
                      |..++.+. +++|+.+|+|+++|+|.+|.|+++++|+.+|+|.++.|.++
T Consensus        23 I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~~~Ig~~   72 (78)
T d1fxja1          23 IDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAA   72 (78)
T ss_dssp             ECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEESEEECTT
T ss_pred             ECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEECCEECCC
Confidence            44444444 46788888888888888888888888888888888877665

>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate 5-diphosphate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.52  E-value=0.00018  Score=69.41  Aligned_cols=69  Identities=25%  Similarity=0.276  Sum_probs=58.9

Q ss_pred             ccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCChhhhhHhhcccCeeEEec
Q 002861          630 SMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSS  707 (873)
Q Consensus       630 ~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~~G~~Dq~~~~~GG~~~~~~  707 (873)
                      ...++|...+++|.++||+|||+..+|++.|+.++++.+++.+++..+|...     .|+    ..-+++||++....
T Consensus        99 ~~~~~I~S~N~FP~aaGLASSAsg~aAl~~al~~~~~~~~~~~~~S~lARlG-----SGS----AcRSi~Gg~v~W~~  167 (188)
T d1fi4a1          99 QWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKG-----SGS----ACRSLFGGYVAWEM  167 (188)
T ss_dssp             GSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHH-----HGG----GGGGGSSSEEEEEC
T ss_pred             cceEEEEecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhh-----ccc----hhhhhcCCeeEecc
Confidence            3468899999999999999999999999999999999999999998888643     222    34689999998764

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=3.3e-05  Score=80.38  Aligned_cols=75  Identities=13%  Similarity=0.085  Sum_probs=62.2

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      ++||+++..|+..++.    ..+++|+++.++  +..++|||+.+|+++         +|.+|.|||..+.         
T Consensus       107 lgddi~~~~~~~~~l~~~~~~~~~atI~~~~V--~dP~~yGVve~d~~g---------~i~~i~EKP~~p~---------  166 (291)
T d1mc3a_         107 LGDNIFFGQGFSPKLRHVAARTEGATVFGYQV--MDPERFGVVEFDDNF---------RAISLEEKPKQPK---------  166 (291)
T ss_dssp             ETTEEEECSSCHHHHHHHTTCCSSEEEEEEEC--SCCSSSBBCEEETTE---------EEEECCBSCSSCS---------
T ss_pred             ECCCcccCcCHHHHHHHHHhCcCCcEEEEEEC--CCcccCCCceeccCc---------ceeEEEECCCCCC---------
Confidence            4678889999887776    568899999987  557899999999988         7999999997652         


Q ss_pred             CCccceeeceeeecchHHHHH
Q 002861           77 DGRALLDTGIIAVRGKAWEEL   97 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~~l   97 (873)
                        .-++.+|+|+|+.++++.+
T Consensus       167 --Sn~a~~GiY~f~~~v~~~~  185 (291)
T d1mc3a_         167 --SNWAVTGLYFYDSKVVEYA  185 (291)
T ss_dssp             --CSEEEEEEEECCTHHHHHH
T ss_pred             --CCeEEEEEEEeChHHHHHH
Confidence              4589999999998876543

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.00035  Score=57.51  Aligned_cols=54  Identities=11%  Similarity=0.224  Sum_probs=47.1

Q ss_pred             eeecCCceeCCCcEEE-EceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeeeeeee
Q 002861          210 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPL  273 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~~v~l  273 (873)
                      ..++++|.|+++++|+ ++.|+++|+||.||+|+++.+..+          +.|.+++++...-+
T Consensus        15 v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~----------~~I~~~s~i~~~~I   69 (78)
T d1fxja1          15 LTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDD----------CEISPYTVVEDANL   69 (78)
T ss_dssp             EEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTT----------CEECTTCEEESEEE
T ss_pred             EEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCC----------CEEcCCcEEECCEE
Confidence            3689999999999999 688999999999999999999887          89998887754444

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

Probab=97.14  E-value=0.00012  Score=75.14  Aligned_cols=90  Identities=14%  Similarity=0.080  Sum_probs=62.9

Q ss_pred             CCCCeeeccCCCcCc---------CCCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhc
Q 002861            1 MTGDVLPCFDASTMI---------LPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKN   71 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~---------~~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~   71 (873)
                      |.|||++.+|...+.         ..++.+|+...|  .+..+.||++..++++..  .+   +|..|.|||+.++-.+ 
T Consensus       106 l~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~yG~i~~~~~~~~--~~---~v~~f~EKp~~~~~~~-  177 (268)
T d2cu2a2         106 LPADHYVGDDEAYREALATMLEAAEEGFVVALGLRP--TRPETEYGYIRLGPREGA--WY---RGEGFVEKPSYAEALE-  177 (268)
T ss_dssp             EESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECC--SSCCSSSCEEEEEEEETT--EE---EEEEEECCCCHHHHHH-
T ss_pred             EecchhhcccHHHHHHHHHHHHHHhcCCeEeeeccc--cccccccceEEecccccc--ch---hhheeecccchhhhhh-
Confidence            469999999975321         144555555554  555688999999876311  11   5899999999876433 


Q ss_pred             CcccCCCccceeeceeeecchHHHHHHhhh
Q 002861           72 HAILDDGRALLDTGIIAVRGKAWEELVMLS  101 (873)
Q Consensus        72 ~a~~~~~~~l~~~Gi~~f~~~~~~~ll~~~  101 (873)
                        ..+. ..+..+|+|+|+.+.+.+.++..
T Consensus       178 --~~~~-~~~~N~Giy~f~~~~l~~~~~~~  204 (268)
T d2cu2a2         178 --YIRK-GYVWNGGVFAFAPATMAELFRRH  204 (268)
T ss_dssp             --HHHT-TCEEEEEEEEECHHHHHHHHHHH
T ss_pred             --hhcc-CcccchhhhhcchHHHHHHHHhh
Confidence              2233 37899999999999998887744

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=96.35  E-value=0.0018  Score=58.93  Aligned_cols=83  Identities=16%  Similarity=0.163  Sum_probs=53.1

Q ss_pred             ecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEEeeeec-------------------CCceeC
Q 002861          159 AYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIA-------------------HGVSIG  219 (873)
Q Consensus       159 ~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~-------------------~~v~v~  219 (873)
                      |||+++.+ +...   +++..+-..+. ...+.++.....+.|..++.|.++++.                   +++.|+
T Consensus         2 lPp~~i~~-~~i~---~s~Ig~g~~I~-~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig   76 (135)
T d1yp2a1           2 LPPSKMLD-ADVT---DSVIGEGCVIK-NCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIG   76 (135)
T ss_dssp             CCCEEEEE-EEEE---EEEECTTCEEE-EEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEEC
T ss_pred             CCCcccCC-CEEE---eCEECCCCEEe-CCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEEC
Confidence            67777754 2222   13444333331 223334444444556666666666654                   447899


Q ss_pred             CCcEEEEceeCCCeEECCCcEEeCcCC
Q 002861          220 EDSLIYDSNISSGIQIGSLSIVVGTNF  246 (873)
Q Consensus       220 ~~s~Ve~s~l~~~v~IG~~~iisg~~i  246 (873)
                      +++.|++|+|+.+++||++|+|.+-..
T Consensus        77 ~~~~I~~~iIg~~~~IG~g~~i~~~~~  103 (135)
T d1yp2a1          77 KNCHIKRAIIDKNARIGDNVKIINKDN  103 (135)
T ss_dssp             TTCEEESEEECTTCEECTTCEECCSSC
T ss_pred             cceEeccceecCCCEECCCcEECCCcc
Confidence            999999999999999999999966443

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.11  E-value=0.0018  Score=67.04  Aligned_cols=73  Identities=18%  Similarity=0.203  Sum_probs=60.3

Q ss_pred             CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861            1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD   76 (873)
Q Consensus         1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~   76 (873)
                      +++||++..++..+..    ..+++|+++.|++.  .+++|++.++.++         +|.+|.+||..+          
T Consensus       109 ~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~~~~--~~~yG~i~~~~~~---------~v~~~~EKp~~~----------  167 (295)
T d1lvwa_         109 LGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRD--PRPFGVVEFDSEG---------RVISIEEKPSRP----------  167 (295)
T ss_dssp             ETTCCEECTTHHHHHHHHHTCCSSEEEEEEECSC--CTTSEEEEECTTS---------BEEEEEESCSSC----------
T ss_pred             eCCcceechhHHHHHHHHHhCCCCeEEEEEEcCC--CccccEEEECCCC---------cEEEEeecccCc----------
Confidence            4789999888877765    77899999998765  5679999999887         799999999744          


Q ss_pred             CCccceeeceeeecchHHH
Q 002861           77 DGRALLDTGIIAVRGKAWE   95 (873)
Q Consensus        77 ~~~~l~~~Gi~~f~~~~~~   95 (873)
                       ...++.+|+|+|+.+.+.
T Consensus       168 -~s~~~~~Giy~~n~~if~  185 (295)
T d1lvwa_         168 -KSNYVVPGLYFYDNQVVE  185 (295)
T ss_dssp             -SCSEECCSEEEECTTHHH
T ss_pred             -ccceeecceEEECHHHHH
Confidence             245789999999999764

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=94.33  E-value=0.036  Score=53.85  Aligned_cols=49  Identities=14%  Similarity=0.390  Sum_probs=31.3

Q ss_pred             eeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861          210 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL  268 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i  268 (873)
                      +.|+.+|.||.+|+|.+|.|+.++.||.++++.|+.+..+          ..||+|+.+
T Consensus       122 ~~IGd~~~IG~gs~i~~~~IG~~~vIg~~svv~g~~i~~g----------~~I~~g~~v  170 (210)
T d1qrea_         122 AAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAIGVTIPDG----------RYIPAGMVV  170 (210)
T ss_dssp             EEECTTCEECTTCEEEEEEECTTCEECTTCEEESCEECTT----------BEECTTCEE
T ss_pred             CcccCCcEeeCCccccccccccCcEEecCcEecCcEeCCC----------cEECCCcEE
Confidence            4566666666666666666666666666666666665554          666666643

>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
species: Escherichia coli [TaxId: 562]

Probab=93.68  E-value=0.03  Score=49.41  Aligned_cols=98  Identities=13%  Similarity=0.132  Sum_probs=62.8

Q ss_pred             CcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChH
Q 002861          731 QQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNE  810 (873)
Q Consensus       731 ~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p  810 (873)
                      +.++||++++...+|+++.+...  ..+....  ..+.       .....-..+|++...          ...     .|
T Consensus         4 ~~~~llv~P~~~vST~~if~~~~--l~~~~~~--~~~~-------~~~~~~~~Ndle~~~----------~~~-----~P   57 (120)
T d1oj4a2           4 EKWYLVAHPGVSIPTPVIFKDPE--LPRNTPK--RSIE-------TLLKCEFSNDCEVIA----------RKR-----FR   57 (120)
T ss_dssp             CCEEEEECCSCCCCHHHHHTCTT--SCCCCCC--CCHH-------HHHHSCCCBTTHHHH----------HHH-----CH
T ss_pred             CcEEEEECCCCCcChHHHHhCcC--cCccccc--ccHH-------HHHHHhccCChHHHH----------HHh-----CH
Confidence            46889999999999999876421  0001000  0011       111111234554432          122     38


Q ss_pred             HHHHHHHHHccCCceEEecCCCccceeEEEeCCcchHHHHHHHHHhc
Q 002861          811 FVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD  857 (873)
Q Consensus       811 ~l~~l~~~a~~ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~  857 (873)
                      ++.++.+.+.+.. +.+|||+|+  |+|+++++.+.++++.+.+.+.
T Consensus        58 ~I~~~~~~L~~~g-~~~MSGSGs--tvF~~f~~~~~a~~~~~~l~~~  101 (120)
T d1oj4a2          58 EVDAVLSWLLEYA-PSRLTGTGA--CVFAEFDTESEARQVLEQAPEW  101 (120)
T ss_dssp             HHHHHHHHHTTTS-CEEECTTSS--CEEEEESSHHHHHHHHHHSCGG
T ss_pred             HHHHHHHHHhhcc-cceecCCCC--EEEEEeCCHHHHHHHHHHcCcc
Confidence            8999988887622 479999998  9999999988888888888764

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=90.30  E-value=0.06  Score=51.03  Aligned_cols=35  Identities=29%  Similarity=0.492  Sum_probs=22.2

Q ss_pred             ecCCceeCCCcEE-EEceeCCCeEECCCcEEe-CcCC
Q 002861          212 IAHGVSIGEDSLI-YDSNISSGIQIGSLSIVV-GTNF  246 (873)
Q Consensus       212 l~~~v~v~~~s~V-e~s~l~~~v~IG~~~iis-g~~i  246 (873)
                      +...|+|++++|| .+|.|+++++||++|+|- |+.+
T Consensus       125 ~~~~v~Ig~~~~iG~~~~I~~Gv~IG~~~vIgagsvV  161 (182)
T d1ocxa_         125 LGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVV  161 (182)
T ss_dssp             EECCEEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             EcceeEECceEeeCceeeccCcEEECCCCEECCCCEE
Confidence            4445566666666 456667778888877775 3443

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=90.17  E-value=0.16  Score=49.06  Aligned_cols=52  Identities=17%  Similarity=0.236  Sum_probs=43.4

Q ss_pred             eEEeeeecCCceeCCCcEEE-EceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCee
Q 002861          206 VVLSSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHC  267 (873)
Q Consensus       206 ~V~~Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~  267 (873)
                      ....+.|+.+|.|+.++.|. +|.|++++.||.+++|.++.|.++          +.|.+++.
T Consensus       100 ~~~~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~~IG~~----------~vIg~~sv  152 (210)
T d1qrea_         100 KEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNN----------CVLEPRSA  152 (210)
T ss_dssp             EEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTT----------CEECTTCE
T ss_pred             cccceeeccccccccccccccCCcccCCcEeeCCccccccccccC----------cEEecCcE
Confidence            34567899999999999997 699999999999999998877665          66666653

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=89.25  E-value=0.1  Score=52.27  Aligned_cols=13  Identities=23%  Similarity=0.401  Sum_probs=6.0

Q ss_pred             ecCCceeCCCcEE
Q 002861          212 IAHGVSIGEDSLI  224 (873)
Q Consensus       212 l~~~v~v~~~s~V  224 (873)
                      |+++|.|+++++|
T Consensus        20 Ig~~v~Ig~~~~I   32 (262)
T d2jf2a1          20 IGANAHIGPFCIV   32 (262)
T ss_dssp             ECTTCEECTTCEE
T ss_pred             ECCCCEECCCCEE
Confidence            4444444444443

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.02  E-value=0.12  Score=48.15  Aligned_cols=48  Identities=31%  Similarity=0.506  Sum_probs=26.6

Q ss_pred             CceeCCCcEEE-EceeCCCeEECCCcEE-eCcCCCCCCCCCccCccceeeCCCeeeeeee
Q 002861          215 GVSIGEDSLIY-DSNISSGIQIGSLSIV-VGTNFPEEAGSTAEDSFRFMLPDRHCLWEVP  272 (873)
Q Consensus       215 ~v~v~~~s~Ve-~s~l~~~v~IG~~~ii-sg~~i~~~~~~~~~~~~~~~iP~~~~i~~v~  272 (873)
                      .+.|+++++|. +|+|+++++||++|+| .++.+.++          ..||+++.+-..|
T Consensus        88 ~~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~----------~~i~~~~iv~G~P  137 (173)
T d1v3wa_          88 GAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPN----------KEIPDYSLVLGVP  137 (173)
T ss_dssp             SCEECSSEEECTTCEECTTCEECSSEEECTTCEECTT----------CEECTTEEEEETT
T ss_pred             eeecCCcccccceeeecCCEEEcceeEEcCCcEEeCC----------eEeCCCCEEcCCC
Confidence            34444444444 3455666666666666 33344333          6788888554333

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=86.91  E-value=0.16  Score=48.40  Aligned_cols=31  Identities=19%  Similarity=0.199  Sum_probs=12.6

Q ss_pred             ecCCceeCCCcEEE-EceeCCCeEECCCcEEe
Q 002861          212 IAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV  242 (873)
Q Consensus       212 l~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iis  242 (873)
                      |+.+|.|+.++.|+ +|.|++++.|+.++.+.
T Consensus       109 Ig~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~  140 (193)
T d3bswa1         109 IEKGVILNTSSVIEHECVIGEFSHVSVGAKCA  140 (193)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             eeeccccccccccceeeecccccccccccccc
Confidence            34444444444443 34444444444444443

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=86.10  E-value=0.18  Score=50.33  Aligned_cols=28  Identities=14%  Similarity=0.254  Sum_probs=10.6

Q ss_pred             cCCceeCCCcEEE-EceeCCCeEECCCcE
Q 002861          213 AHGVSIGEDSLIY-DSNISSGIQIGSLSI  240 (873)
Q Consensus       213 ~~~v~v~~~s~Ve-~s~l~~~v~IG~~~i  240 (873)
                      +++|.|+++++|. +++|.+++.||++|.
T Consensus        28 g~~v~Ig~~~~I~~~v~I~~~t~IG~~~~   56 (259)
T d1j2za_          28 GDGVKLDEGVKLHNNVTLQGHTFVGKNTE   56 (259)
T ss_dssp             CTTCEECTTCEECTTCEECSEEEECTTCE
T ss_pred             CCCCEECCCCEECCCEEEeCCCEEeeecc
Confidence            3333333333332 333333344444433

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=85.71  E-value=0.36  Score=45.11  Aligned_cols=28  Identities=25%  Similarity=0.404  Sum_probs=16.8

Q ss_pred             eeecCCceeCCCcEEEEceeCCCeEECC
Q 002861          210 SKIAHGVSIGEDSLIYDSNISSGIQIGS  237 (873)
Q Consensus       210 Svl~~~v~v~~~s~Ve~s~l~~~v~IG~  237 (873)
                      ..|+++|.|+++++|++|.|++++.|..
T Consensus        33 v~IG~~~~I~~~~~i~~~~IG~~~~I~~   60 (196)
T d1g97a1          33 TKIGAETVLTNGTYVVDSTIGAGAVITN   60 (196)
T ss_dssp             CEECTTCEECTTCEEESCEECTTCEECS
T ss_pred             cEECCCceEcCceEeeeeecccCccccc
Confidence            4566666666666666666665555543

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=85.50  E-value=0.22  Score=49.54  Aligned_cols=32  Identities=25%  Similarity=0.429  Sum_probs=20.6

Q ss_pred             eecCCceeCCCcEE-EEceeCCCeEECCCcEEe
Q 002861          211 KIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVV  242 (873)
Q Consensus       211 vl~~~v~v~~~s~V-e~s~l~~~v~IG~~~iis  242 (873)
                      +|+++|+|+++++| .+++|++++.||+||.|.
T Consensus        14 ~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~   46 (259)
T d1j2za_          14 EINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQ   46 (259)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCEEEe
Confidence            56777777777776 345566666666666654

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.62  E-value=0.71  Score=43.27  Aligned_cols=34  Identities=15%  Similarity=0.317  Sum_probs=19.9

Q ss_pred             ecCCceeCCCcEEE-EceeCCCeEECCCcEEeCcC
Q 002861          212 IAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVGTN  245 (873)
Q Consensus       212 l~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg~~  245 (873)
                      ++.+|.|+++++|+ +++|++++.|+++|+|.+..
T Consensus        17 IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~   51 (201)
T d2oi6a1          17 HGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSV   51 (201)
T ss_dssp             ECSSCEECTTEEEEEEEEECTTCEECTTCEEESCE
T ss_pred             ECCCCEECCCCEECCceEECCCcEECCCEEEeeec
Confidence            45566666666665 55566666666666655433

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=84.36  E-value=0.24  Score=45.83  Aligned_cols=9  Identities=11%  Similarity=0.087  Sum_probs=5.1

Q ss_pred             eeeCCCeee
Q 002861          260 FMLPDRHCL  268 (873)
Q Consensus       260 ~~iP~~~~i  268 (873)
                      ..||+++.+
T Consensus       127 ~~i~~~~v~  135 (172)
T d1xhda_         127 KKIPPNTLA  135 (172)
T ss_dssp             CEECTTEEE
T ss_pred             eEECCCeEE
Confidence            456666644

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=84.35  E-value=0.3  Score=48.69  Aligned_cols=37  Identities=19%  Similarity=0.264  Sum_probs=24.7

Q ss_pred             eecCCceeCCCcEEE-EceeCCCeEECCCcEEe-CcCCC
Q 002861          211 KIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV-GTNFP  247 (873)
Q Consensus       211 vl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iis-g~~i~  247 (873)
                      +++++|.|++++.|. +|+|+++++||++|+|. ++.|.
T Consensus        13 ~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~   51 (262)
T d2jf2a1          13 IVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVN   51 (262)
T ss_dssp             EECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEEC
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEc
Confidence            466777777777773 66777777777777773 44443

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=82.38  E-value=0.47  Score=44.85  Aligned_cols=32  Identities=25%  Similarity=0.250  Sum_probs=14.6

Q ss_pred             eecCCceeCCCcEE-EEceeCCCeEECCCcEEe
Q 002861          211 KIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVV  242 (873)
Q Consensus       211 vl~~~v~v~~~s~V-e~s~l~~~v~IG~~~iis  242 (873)
                      ++++++.|++++.| .+|+|..++.||.+|.|.
T Consensus       102 ~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~i~  134 (193)
T d3bswa1         102 VINAKAKIEKGVILNTSSVIEHECVIGEFSHVS  134 (193)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             eecCCceeeeccccccccccceeeecccccccc
Confidence            34444444444444 334444455555555443

>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Mevalonate 5-diphosphate decarboxylase
domain: Mevalonate 5-diphosphate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.69  E-value=13  Score=34.76  Aligned_cols=83  Identities=17%  Similarity=0.119  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHh----hhCCC--CChHHHHHHHHHH---cc---CCceEEecCCCccceeEE
Q 002861          772 ELAKNGRDALMNCDVDELGKIMLEAWRLHQ----ELDPH--CSNEFVDRLFAFA---DP---YCCGYKLVGAGGGGFALL  839 (873)
Q Consensus       772 ~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~----~l~~~--vs~p~l~~l~~~a---~~---ga~G~klsGAGgGG~v~~  839 (873)
                      +...++.+|++++|+..||++..++...+.    +-+|.  ..++.-.++++..   ++   +...+--.-||+  .+..
T Consensus        42 ~r~~~m~~AI~~rDF~~f~eite~ds~~mHA~~l~s~Ppi~Ylnd~S~~ii~~V~~~r~~~g~~~v~yT~DAGP--Nv~l  119 (203)
T d1fi4a2          42 KRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAGP--NAVL  119 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSSS--CEEE
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHHHhcCCCCeEEECchHHHHHHHHHHHHHhcCCccEEEEECCCC--CEEE
Confidence            345679999999999999999766533222    22222  2234444444444   32   344556789999  6777


Q ss_pred             EeCCcchHHHHHHHHHhc
Q 002861          840 LAKDAESATELRRMLEKD  857 (873)
Q Consensus       840 l~~~~~~a~~i~~~L~~~  857 (873)
                      ++.. +..+++...+++.
T Consensus       120 l~~~-~~~~~v~~~l~~~  136 (203)
T d1fi4a2         120 YYLA-ENESKLFAFIYKL  136 (203)
T ss_dssp             EEEG-GGHHHHHHHHHHH
T ss_pred             EEcc-ccHHHHHHHHHHH
Confidence            7764 5677888887765