Citrus Sinensis ID: 002862

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870---
MAEMANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKVRYLQLLHGKIADNFWRVAKSSVPLEMKASAGGYLTNS
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccEEEcccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccccccccccccccccccc
ccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccEEEEEcccccccccccHHHccHHHHHHcccccEEEEcccccEEEEccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHccccccccccccccccccccHHHHHHHHHHccccccccccccHHccccHcccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEccccHHHHHHHHHccccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHccccEEEEccccccccc
maemannapysgaqvphqppmvgsmdpprgfgppipsqyrplvpapqpqhyvpmasqhfqpggqgglimnagfpsqplqppfrplmhplparpgppapshvppppqvmslpnaqpsnhippsslprpnvqalssyppglgglgrpvaasytfapssygqpqlignvnigsqqpmsqmhvpsisaggqlgvsvsqstvsstpvqptdeqmaattasaplptlqpksaegvqtdwkehtsadgrryyfnkrtrvstwdkpFELMTTIEradastdwkeftspdgrkyyYNKVtkqskwslpdELKLAREQAEKASikgtqsetspnsqtsisfpssvvkapssadisssTVEVIVSSPVAVVPIIaasetqpalvsvpstspvitssvvanadgfpktvdaiapmidvsssigeavtdNTVAEAKNnlsnmsasdlvgasdkvpppvteetrkdavrgekvSDALEEKTVEQEHFAYANKLEAKNAFKALLESanvgsdwtwDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYcikvkdsppymavasntsgstpkdLFEDVVEELQKQFQEDKTRIKDAVKLRKITlsstwtfedfkasvledatsppisdvnLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKVRYLQLLHGKIADNFWrvakssvplemkasaggyltns
maemannapysgaqvphqPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTasaplptlqpksaegvqtdwkehtsadgrryyfnkrtrvstwdkpfELMTtieradastdwkeftspdgrkyyynkvtkqskwslpdELKLAREQAEKAsikgtqsetspnsqtsisFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASetqpalvsvpstspVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLsnmsasdlvgasdkvpppvteetrkdavrgekvsDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTlgerktafneylgqkkkqdaeeRRLKLKKARDDYKKMLeesveltsstrwskavtmfenderfkalererdrkdmfddhlDELKQKERAKAQEERKRNIIEyrkflescdfikantqwrkvqdrleadercsrldkmdrLEIFQEYLNDLEKEEEEQRKiqkeelskterknrdefrkLMEADVAlgtltaktnwrdYCIKVKDSPPYMAVAsntsgstpkDLFEDVVEELQKQfqedktrikdaVKLRkitlsstwtfEDFKasvledatsppisdvnlkLIFDDLLIKVKEKEEkeakkrkrledefFDLLCSVKVRYLQLLHGKIADNFWRVAKSsvplemkasaggyltns
MAEMANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRplmhplparpgppapshvppppqvmsLPNAQPSNHIPPSSLPRPNVQALSSYppglgglgRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGvsvsqstvsstpvqptDEQMaattasaplptlQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADIssstvevivsspvavvpiiaaseTQPALvsvpstspvitssvvANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFqeylndlekeeeeqrkiqkeelSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIkvkekeekeakkrkrledeFFDLLCSVKVRYLQLLHGKIADNFWRVAKSSVPLEMKASAGGYLTNS
*************************************************************************************************************************************************VAASYTFA*********I*****************************************************************************GRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVT*********************************************************VEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDV*****************************************************************HFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEY**************************************************************************************NIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYL*******************************LMEADVALGTLTAKTNWRDYCIKVKDS**Y********************************RIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKV**************EDEFFDLLCSVKVRYLQLLHGKIADNFWRVAKS*****************
********************************************************************************************************************************************************************************************************************************************TSADGRRYYFNK*****************************TSPDGRKYYYNKVT*******************************************************************************************************************************************************************************************LEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYL**********************KKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLD**********************KFL****************DRLEADERCSRLDKMDRLEIFQEYLND************************DEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAV*******TPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLI******************EFFDLLCSVKVRYLQLLH**IA*NFWRVAKSSVPLEM***********
*************QVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLG************************ASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAR******************************************VEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEY************RLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLE***************KTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKVRYLQLLHGKIADNFWRVAKSSVPLEMKASAGGYLTNS
**************************************Y*****************************************PFRPLMHPLPARPGP*****VPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTP*******************************WKE*TSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQ**************************************************************************************************************************************PPVTE*TRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKVRYLQLLHGKIADNFWRVAKSSVPLEMKASA*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAEMANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKxxxxxxxxxxxxxxxxxxxxxxxxSVELTSSTRWSKAVTMFENDERFKAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVxxxxxxxxxxxxxxxxxxxxxRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLxxxxxxxxxxxxxxxxxxxxxFFDLLCSVKVRYLQLLHGKIADNFWRVAKSSVPLEMKASAGGYLTNS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query873 2.2.26 [Sep-21-2011]
F4JCC1 992 Pre-mRNA-processing prote yes no 0.900 0.792 0.491 0.0
B6EUA9 958 Pre-mRNA-processing prote no no 0.860 0.783 0.501 0.0
Q9R1C7 953 Pre-mRNA-processing facto yes no 0.631 0.578 0.318 6e-60
O75400 957 Pre-mRNA-processing facto yes no 0.649 0.592 0.306 1e-59
Q80W14 870 Pre-mRNA-processing facto no no 0.383 0.385 0.338 3e-38
Q6NWY9 871 Pre-mRNA-processing facto no no 0.380 0.381 0.344 4e-38
P34600724 WW domain-containing prot yes no 0.418 0.504 0.293 1e-35
O14176695 Pre-mRNA-processing prote yes no 0.561 0.705 0.238 7e-35
O147761098 Transcription elongation no no 0.344 0.274 0.255 5e-18
Q8CGF71100 Transcription elongation no no 0.344 0.273 0.255 2e-17
>sp|F4JCC1|PR35B_ARATH Pre-mRNA-processing protein 40B OS=Arabidopsis thaliana GN=PRP40B PE=1 SV=1 Back     alignment and function desciption
 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/853 (49%), Positives = 551/853 (64%), Gaps = 67/853 (7%)

Query: 4   MANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGG 63
           MANN  Y G Q P Q P   S+D PRGF PP+  Q+ P + APQ +    ++SQ+FQ  G
Sbjct: 1   MANNHQYPGIQ-PFQHPNASSIDLPRGFAPPMNFQFLPTIQAPQSEQVARLSSQNFQCVG 59

Query: 64  QGGLIMNAGFPSQPLQPPFRPLMHPLPARP---GPPAPSHVP-PPPQVMSLPNAQPSNHI 119
           +GG +++ G+P Q   P     MH    RP         HVP  PP ++S PN   ++  
Sbjct: 60  RGGTVLSIGYPPQSYAPQLLQSMHHSHERPSQLNQVQVQHVPLGPPTLISQPNVSIAS-- 117

Query: 120 PPSSLPRPNVQALSSYPPGLGG----LGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMS 175
             +SL +P VQ      PG GG       P A SY     S   PQ+ G           
Sbjct: 118 -GTSLHQPYVQTPDIGMPGFGGPRALFSYPSATSY---EGSRVPPQVTG----------- 162

Query: 176 QMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKE 235
               PSI +  Q   S+  ++  S+ + PT EQ  A         L+P  ++   TDW E
Sbjct: 163 ----PSIHSQAQQRASIIHTSAESSIMNPTFEQPKAAF-------LKPLPSQKALTDWVE 211

Query: 236 HTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSK 295
           HTSADGR+Y+FNKRT+ STW+KP ELMT  ERADA TDWKE +SPDGRKYYYNK+TKQS 
Sbjct: 212 HTSADGRKYFFNKRTKKSTWEKPVELMTLFERADARTDWKEHSSPDGRKYYYNKITKQST 271

Query: 296 WSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSS 355
           W++P+E+K+ REQAE AS++G      P+++  I     + ++ +++  + + +    S+
Sbjct: 272 WTMPEEMKIVREQAEIASVQG------PHAEGIIDASEVLTRSDTASTAAPTGLPSQTST 325

Query: 356 PVAVVPIIAASE-TQPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAV 414
              V  +   S+  QPA  SVP +S     S V N D    + D  + + D S + G +V
Sbjct: 326 SEGVEKLTLTSDLKQPA--SVPGSS-----SPVENVDRVQMSADETSQLCDTSETDGLSV 378

Query: 415 --TDNTVAE--AKNNLS--------NMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDA 462
             T+ + A    K+ +S        +MS  +    S   P    +E++K  V  EKV   
Sbjct: 379 PVTETSAATLVEKDEISVGNSGDSDDMSTKNANQGSGSGP----KESQKPMVESEKVESQ 434

Query: 463 LEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGER 522
            EEK + QE F++ NKLEA + FK+LL+SA VGSDWTW+QA+R IIND+RYGALRTLGER
Sbjct: 435 TEEKQIHQESFSFNNKLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKRYGALRTLGER 494

Query: 523 KTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFK 582
           K AFNE+L Q K+   EER  + KK  +D+K+MLEE VELT STRWSK VTMFE+DERFK
Sbjct: 495 KQAFNEFLLQTKRAAEEERLARQKKLYEDFKRMLEECVELTPSTRWSKTVTMFEDDERFK 554

Query: 583 ALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDR 642
           ALERE+DR+++F+DH+ ELK+K R KA E+RKRNIIEY++FLESC+FIK N+QWRKVQDR
Sbjct: 555 ALEREKDRRNIFEDHVSELKEKGRVKALEDRKRNIIEYKRFLESCNFIKPNSQWRKVQDR 614

Query: 643 LEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADV 702
           LE DERCSRL+K+D+LEIFQEYL DLE+EEEE++KIQKEEL K ERK+RDEF  L++  +
Sbjct: 615 LEVDERCSRLEKIDQLEIFQEYLRDLEREEEEKKKIQKEELKKVERKHRDEFHGLLDEHI 674

Query: 703 ALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKD 762
           A G LTAKT WRDY +KVKD P Y A+ASN+SG+TPKDLFED VE+L+K+  E K++IKD
Sbjct: 675 ATGELTAKTIWRDYLMKVKDLPVYSAIASNSSGATPKDLFEDAVEDLKKRDHELKSQIKD 734

Query: 763 AVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKR 822
            +KLRK+ LS+  TF++FK S+ ED   P I DV LKL+FDDLL + KEKEEKEA+K+ R
Sbjct: 735 VLKLRKVNLSAGSTFDEFKVSISEDIGFPLIPDVRLKLVFDDLLERAKEKEEKEARKQTR 794

Query: 823 LEDEFFDLLCSVK 835
             ++  D+L S K
Sbjct: 795 QTEKLVDMLRSFK 807
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Interacts with both the phosphorylated and the dephosphorylated forms of the CTD domain of the RPB1 subunit of the RNA polymerase II.
Arabidopsis thaliana (taxid: 3702)
>sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A PE=1 SV=1 Back     alignment and function description
>sp|Q9R1C7|PR40A_MOUSE Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a PE=1 SV=1 Back     alignment and function description
>sp|O75400|PR40A_HUMAN Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A PE=1 SV=2 Back     alignment and function description
>sp|Q80W14|PR40B_MOUSE Pre-mRNA-processing factor 40 homolog B OS=Mus musculus GN=Prpf40b PE=2 SV=2 Back     alignment and function description
>sp|Q6NWY9|PR40B_HUMAN Pre-mRNA-processing factor 40 homolog B OS=Homo sapiens GN=PRPF40B PE=1 SV=1 Back     alignment and function description
>sp|P34600|YO61_CAEEL WW domain-containing protein ZK1098.1 OS=Caenorhabditis elegans GN=ZK1098.1 PE=1 SV=2 Back     alignment and function description
>sp|O14176|PRP40_SCHPO Pre-mRNA-processing protein prp40 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp40 PE=1 SV=1 Back     alignment and function description
>sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1 SV=2 Back     alignment and function description
>sp|Q8CGF7|TCRG1_MOUSE Transcription elongation regulator 1 OS=Mus musculus GN=Tcerg1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query873
255562210956 protein binding protein, putative [Ricin 0.864 0.789 0.610 0.0
302142164 1030 unnamed protein product [Vitis vinifera] 0.930 0.788 0.572 0.0
356574333 1072 PREDICTED: pre-mRNA-processing factor 40 0.933 0.760 0.575 0.0
359492532 1020 PREDICTED: pre-mRNA-processing factor 40 0.904 0.774 0.561 0.0
449484509 983 PREDICTED: pre-mRNA-processing protein 4 0.892 0.792 0.553 0.0
356534266 1017 PREDICTED: pre-mRNA-processing factor 40 0.931 0.799 0.566 0.0
224060893972 predicted protein [Populus trichocarpa] 0.846 0.760 0.549 0.0
449447079 985 PREDICTED: pre-mRNA-processing protein 4 0.878 0.778 0.513 0.0
449465095796 PREDICTED: pre-mRNA-processing protein 4 0.682 0.748 0.624 0.0
224127228 1019 predicted protein [Populus trichocarpa] 0.895 0.767 0.530 0.0
>gi|255562210|ref|XP_002522113.1| protein binding protein, putative [Ricinus communis] gi|223538712|gb|EEF40313.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/813 (61%), Positives = 587/813 (72%), Gaps = 58/813 (7%)

Query: 25  MDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRP 84
           MDPPR F PP+P Q+RP+VPA Q Q ++P+AS HFQP G+G  +MNAG PSQP Q  F P
Sbjct: 1   MDPPRNFVPPMPMQFRPVVPAQQSQQFIPVASPHFQPVGRGVPLMNAGLPSQPPQSQFPP 60

Query: 85  LMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPP-SSLPRPNVQALSSYPPGLGGLG 143
            +   P+RPG P     P   QV+SLPNAQ + H+   SSLP P+V    +Y PGLGG G
Sbjct: 61  SVQQFPSRPGQPGHGPPPS--QVISLPNAQANRHVTSGSSLPPPSVPTSINYAPGLGGPG 118

Query: 144 RPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVS-VSQSTVSSTPV 202
            P+++SYTF PSSYGQP +  N  +   QP+SQM  PSI AGG  G S V+QS    TP+
Sbjct: 119 APLSSSYTFVPSSYGQPPVAANT-VSQYQPISQMRPPSIPAGGLAGSSSVNQSITPVTPM 177

Query: 203 QPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELM 262
           Q   EQ + T    P      K  E    DWKEH +A+GRRYY+NKRTR S+W+KPFELM
Sbjct: 178 QLNGEQSSVTNDLHPT-----KPNEETTMDWKEHLAANGRRYYYNKRTRQSSWEKPFELM 232

Query: 263 TTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETS 322
           T IERADASTDWKEF SP+GR YYYNK TKQSKW +P+ELKLAR++ EKAS+   Q++T 
Sbjct: 233 TPIERADASTDWKEFASPEGRTYYYNKTTKQSKWEIPEELKLARKRLEKASLVEAQADTL 292

Query: 323 PNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSPVI 382
            NS      P SV KAPS AD SS T +V  SSPV V P+ AA + Q    S      V+
Sbjct: 293 ANSHVPAFVPPSVDKAPSVADASSLTAQVTPSSPVPVTPVAAAVDLQSQPASESPGLAVM 352

Query: 383 TSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVP 442
            SS+ +N+D                       T+N V            S + G S+KV 
Sbjct: 353 ASSLTSNSDEV-------------------QTTENIV------------STVSGRSEKVN 381

Query: 443 PPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQ 502
                            S  +EEK V QE   Y +KLEAKNAFKALLESA+VGSDWTWDQ
Sbjct: 382 -----------------SIGIEEKIVSQEPLTYTDKLEAKNAFKALLESASVGSDWTWDQ 424

Query: 503 ALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVEL 562
           A+R IINDRRYGALRTLGERK AFNEYL QKKKQDAEERR K KKAR+++K MLEES EL
Sbjct: 425 AMRVIINDRRYGALRTLGERKQAFNEYLSQKKKQDAEERRSKQKKAREEFKNMLEESKEL 484

Query: 563 TSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRK 622
           TS+ RWSKAVT+FENDERFKA+ERERDR+D+FD  L EL  KERAKAQEERKRNI+EYR+
Sbjct: 485 TSTMRWSKAVTLFENDERFKAVERERDRRDIFDSFLQELGDKERAKAQEERKRNIMEYRQ 544

Query: 623 FLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEE 682
           FLESCDFIKA+TQWRKVQDRLEADERCSRL+K+DRLEIFQ+YL DLEKEEEEQRKIQKEE
Sbjct: 545 FLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLRDLEKEEEEQRKIQKEE 604

Query: 683 LSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLF 742
             K ERKNRDEFRKL+E  VA GT+TAKT+WRDY +KVKD P Y+AVASNTSGSTPKDLF
Sbjct: 605 QRKAERKNRDEFRKLLEEHVAAGTMTAKTHWRDYYLKVKDLPAYLAVASNTSGSTPKDLF 664

Query: 743 EDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIF 802
           EDV+EEL+KQ+ EDK+RIKDAVKL+K+ ++STWT +D KA+++ED +SP ISD+NLK++F
Sbjct: 665 EDVLEELEKQYHEDKSRIKDAVKLKKVAMASTWTLDDLKAAIVEDISSPSISDMNLKIVF 724

Query: 803 DDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVK 835
           D+LL + KEKEEK+AKKRKRL D+F +LL S K
Sbjct: 725 DELLERAKEKEEKDAKKRKRLADDFLNLLHSTK 757

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302142164|emb|CBI19367.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356574333|ref|XP_003555303.1| PREDICTED: pre-mRNA-processing factor 40 homolog A-like [Glycine max] Back     alignment and taxonomy information
>gi|359492532|ref|XP_002283496.2| PREDICTED: pre-mRNA-processing factor 40 homolog B-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449484509|ref|XP_004156902.1| PREDICTED: pre-mRNA-processing protein 40A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356534266|ref|XP_003535678.1| PREDICTED: pre-mRNA-processing factor 40 homolog B-like [Glycine max] Back     alignment and taxonomy information
>gi|224060893|ref|XP_002300284.1| predicted protein [Populus trichocarpa] gi|222847542|gb|EEE85089.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449447079|ref|XP_004141297.1| PREDICTED: pre-mRNA-processing protein 40A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449465095|ref|XP_004150264.1| PREDICTED: pre-mRNA-processing protein 40A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224127228|ref|XP_002320019.1| predicted protein [Populus trichocarpa] gi|222860792|gb|EEE98334.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query873
TAIR|locus:2091171 992 PRP40B "pre-mRNA-processing pr 0.655 0.576 0.511 1.2e-166
TAIR|locus:2194894 958 PRP40A "pre-mRNA-processing pr 0.607 0.553 0.469 3.2e-134
UNIPROTKB|F1RQH2 957 PRPF40A "Uncharacterized prote 0.654 0.596 0.295 6.5e-69
RGD|1311401 953 Prpf40a "PRP40 pre-mRNA proces 0.649 0.594 0.308 4e-67
MGI|MGI:1860512 953 Prpf40a "PRP40 pre-mRNA proces 0.649 0.594 0.307 5.1e-67
UNIPROTKB|O75400 957 PRPF40A "Pre-mRNA-processing f 0.654 0.596 0.293 6.3e-66
UNIPROTKB|G3MZC7 958 PRPF40A "Uncharacterized prote 0.662 0.603 0.286 8.4e-66
ZFIN|ZDB-GENE-030131-274 851 prpf40a "PRP40 pre-mRNA proces 0.467 0.479 0.304 1.7e-61
UNIPROTKB|Q6NWY9 871 PRPF40B "Pre-mRNA-processing f 0.390 0.391 0.319 2e-55
DICTYBASE|DDB_G0283543 681 prp40 "FF domain-containing pr 0.382 0.490 0.310 3.4e-55
TAIR|locus:2091171 PRP40B "pre-mRNA-processing protein 40B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1466 (521.1 bits), Expect = 1.2e-166, Sum P(2) = 1.2e-166
 Identities = 304/594 (51%), Positives = 393/594 (66%)

Query:   222 QPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPD 281
             +P  ++   TDW EHTSADGR+Y+FNKRT+ STW+KP ELMT  ERADA TDWKE +SPD
Sbjct:   198 KPLPSQKALTDWVEHTSADGRKYFFNKRTKKSTWEKPVELMTLFERADARTDWKEHSSPD 257

Query:   282 GRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPN-SQTSISFPSSVVKAPS 340
             GRKYYYNK+TKQS W++P+E+K+ REQAE AS++G  +E   + S+      ++   AP+
Sbjct:   258 GRKYYYNKITKQSTWTMPEEMKIVREQAEIASVQGPHAEGIIDASEVLTRSDTASTAAPT 317

Query:   341 SADIXXXXXXXXXXXXXXXXXXXXXXXTQPALXXXXXXXXXXXXXXXANADGFPKTVDAI 400
                                         QPA                 N D    + D  
Sbjct:   318 GLP------SQTSTSEGVEKLTLTSDLKQPA-------SVPGSSSPVENVDRVQMSADET 364

Query:   401 APMIDVSSSIGEAV--TDNTVAEA--KNNLS--NMSASDLVGA--SDKVPPPVTEETRKD 452
             + + D S + G +V  T+ + A    K+ +S  N   SD +    +++      +E++K 
Sbjct:   365 SQLCDTSETDGLSVPVTETSAATLVEKDEISVGNSGDSDDMSTKNANQGSGSGPKESQKP 424

Query:   453 AVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRR 512
              V  EKV    EEK + QE F++ NKLEA + FK+LL+SA VGSDWTW+QA+R IIND+R
Sbjct:   425 MVESEKVESQTEEKQIHQESFSFNNKLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKR 484

Query:   513 YGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAV 572
             YGALRTLGERK AFNE+L Q K+   EER  + KK  +D+K+MLEE VELT STRWSK V
Sbjct:   485 YGALRTLGERKQAFNEFLLQTKRAAEEERLARQKKLYEDFKRMLEECVELTPSTRWSKTV 544

Query:   573 TMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKA 632
             TMFE+DERFKALERE+DR+++F+DH+ ELK+K R KA E+RKRNIIEY++FLESC+FIK 
Sbjct:   545 TMFEDDERFKALEREKDRRNIFEDHVSELKEKGRVKALEDRKRNIIEYKRFLESCNFIKP 604

Query:   633 NTQWRKVQDRLEADERCSRLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNRD 692
             N+QWRKVQDRLE DERCSRL+K+D+LEIF                       K ERK+RD
Sbjct:   605 NSQWRKVQDRLEVDERCSRLEKIDQLEIFQEYLRDLEREEEEKKKIQKEELKKVERKHRD 664

Query:   693 EFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQ 752
             EF  L++  +A G LTAKT WRDY +KVKD P Y A+ASN+SG+TPKDLFED VE+L+K+
Sbjct:   665 EFHGLLDEHIATGELTAKTIWRDYLMKVKDLPVYSAIASNSSGATPKDLFEDAVEDLKKR 724

Query:   753 FQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLL 806
               E K++IKD +KLRK+ LS+  TF++FK S+ ED   P I DV LKL+FDDLL
Sbjct:   725 DHELKSQIKDVLKLRKVNLSAGSTFDEFKVSISEDIGFPLIPDVRLKLVFDDLL 778
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008380 "RNA splicing" evidence=IPI
GO:0070063 "RNA polymerase binding" evidence=IPI
TAIR|locus:2194894 PRP40A "pre-mRNA-processing protein 40A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1RQH2 PRPF40A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1311401 Prpf40a "PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1860512 Prpf40a "PRP40 pre-mRNA processing factor 40 homolog A (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|O75400 PRPF40A "Pre-mRNA-processing factor 40 homolog A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3MZC7 PRPF40A "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-274 prpf40a "PRP40 pre-mRNA processing factor 40 homolog A (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q6NWY9 PRPF40B "Pre-mRNA-processing factor 40 homolog B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283543 prp40 "FF domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00014992001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (1023 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query873
COG5104590 COG5104, PRP40, Splicing factor [RNA processing an 1e-28
COG5104590 COG5104, PRP40, Splicing factor [RNA processing an 3e-17
pfam0184650 pfam01846, FF, FF domain 5e-14
smart0044155 smart00441, FF, Contains two conserved F residues 6e-14
pfam0184650 pfam01846, FF, FF domain 3e-13
COG5104590 COG5104, PRP40, Splicing factor [RNA processing an 2e-09
cd0020131 cd00201, WW, Two conserved tryptophans domain; als 7e-09
pfam0039730 pfam00397, WW, WW domain 2e-08
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 2e-08
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 2e-08
cd0020131 cd00201, WW, Two conserved tryptophans domain; als 3e-08
smart0045633 smart00456, WW, Domain with 2 conserved Trp (W) re 4e-08
smart0045633 smart00456, WW, Domain with 2 conserved Trp (W) re 9e-08
pfam0039730 pfam00397, WW, WW domain 8e-07
COG5104 590 COG5104, PRP40, Splicing factor [RNA processing an 2e-06
smart0044155 smart00441, FF, Contains two conserved F residues 2e-06
pfam07223357 pfam07223, DUF1421, Protein of unknown function (D 8e-06
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 8e-06
pfam0184650 pfam01846, FF, FF domain 9e-06
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 1e-05
pfam04487206 pfam04487, CITED, CITED 1e-05
pfam03154979 pfam03154, Atrophin-1, Atrophin-1 family 2e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-05
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 4e-05
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 4e-05
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 5e-05
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 5e-05
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 7e-05
smart00818165 smart00818, Amelogenin, Amelogenins, cell adhesion 7e-05
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 9e-05
PHA03378991 PHA03378, PHA03378, EBNA-3B; Provisional 9e-05
pfam07271279 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 1e-04
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 2e-04
TIGR01628562 TIGR01628, PABP-1234, polyadenylate binding protei 2e-04
pfam13908177 pfam13908, Shisa, Wnt and FGF inhibitory regulator 2e-04
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 3e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 4e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 4e-04
pfam02948174 pfam02948, Amelogenin, Amelogenin 5e-04
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 5e-04
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 6e-04
COG0610962 COG0610, COG0610, Type I site-specific restriction 8e-04
pfam07223357 pfam07223, DUF1421, Protein of unknown function (D 0.001
pfam03154979 pfam03154, Atrophin-1, Atrophin-1 family 0.001
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 0.002
pfam11029136 pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP 0.002
smart0044155 smart00441, FF, Contains two conserved F residues 0.003
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.003
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 0.004
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 0.004
>gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification] Back     alignment and domain information 
 Score =  121 bits (305), Expect = 1e-28
 Identities = 75/357 (21%), Positives = 154/357 (43%), Gaps = 13/357 (3%)

Query: 478 KLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQD 537
           K EA+  F  +L+   V S W   +A+  + + R +        RK  F +Y   ++K  
Sbjct: 145 KEEAEKEFITMLKENQVDSTWPIFRAIEELRDPRYWMVDTDPLWRKDLFKKYFENQEKDQ 204

Query: 538 AEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDH 597
            EE   K +K  +++ KML  +  +   T W    ++F     + ++  E+ ++  F  +
Sbjct: 205 REEEENKQRKYINEFCKMLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKY 264

Query: 598 LDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSR------ 651
            D+L   E+   +      +    + L S    +    W       ++  R  +      
Sbjct: 265 KDKLGCYEKYVGKHMGGTALGRLEEVLRSLGS-ETFIIWLLNHYVFDSVVRYLKNKEMKP 323

Query: 652 LDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKT 711
           LD+ D L  F  Y+  LEKE     + +K   ++  R +RDEFR L+    + G +  + 
Sbjct: 324 LDRKDILFSFIRYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTLLRKLYSEGKIYYRM 383

Query: 712 NWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITL 771
            W++    +KD P ++ +   T GS+P DLF D + +L+  +   +   +   +  +I+ 
Sbjct: 384 KWKNAYPLIKDDPRFLNLLGRT-GSSPLDLFFDFIVDLENMYGFARRSYERETRTGQISP 442

Query: 772 SSTWTFEDFKASVLE-----DATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRL 823
           +     ++   ++ E     +     +   ++ LI D L+ +  EK +++ +  +R+
Sbjct: 443 TDRRAVDEIFEAIAEKKEEGEIKFDKVDKEDISLIVDGLIKQRNEKIQQKLQNERRI 499

Length = 590
>gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|202007 pfam01846, FF, FF domain Back     alignment and domain information
>gnl|CDD|128718 smart00441, FF, Contains two conserved F residues Back     alignment and domain information
>gnl|CDD|202007 pfam01846, FF, FF domain Back     alignment and domain information
>gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information
>gnl|CDD|215899 pfam00397, WW, WW domain Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information
>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues Back     alignment and domain information
>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues Back     alignment and domain information
>gnl|CDD|215899 pfam00397, WW, WW domain Back     alignment and domain information
>gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|128718 smart00441, FF, Contains two conserved F residues Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|202007 pfam01846, FF, FF domain Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|218108 pfam04487, CITED, CITED Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional Back     alignment and domain information
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>gnl|CDD|222449 pfam13908, Shisa, Wnt and FGF inhibitory regulator Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|217298 pfam02948, Amelogenin, Amelogenin Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|220950 pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP2) Back     alignment and domain information
>gnl|CDD|128718 smart00441, FF, Contains two conserved F residues Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 873
COG5104590 PRP40 Splicing factor [RNA processing and modifica 100.0
KOG0155617 consensus Transcription factor CA150 [Transcriptio 100.0
KOG0152463 consensus Spliceosomal protein FBP11/Splicing fact 100.0
KOG0155617 consensus Transcription factor CA150 [Transcriptio 100.0
COG5104590 PRP40 Splicing factor [RNA processing and modifica 99.91
KOG0152463 consensus Spliceosomal protein FBP11/Splicing fact 99.73
PF0184651 FF: FF domain; InterPro: IPR002713 The FF domain m 99.14
smart0044155 FF Contains two conserved F residues. A novel moti 99.03
PF0184651 FF: FF domain; InterPro: IPR002713 The FF domain m 98.89
smart0044155 FF Contains two conserved F residues. A novel moti 98.85
KOG4271 1100 consensus Rho-GTPase activating protein [Signal tr 98.73
KOG4271 1100 consensus Rho-GTPase activating protein [Signal tr 98.57
PF0039731 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp 98.56
PF0039731 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp 98.54
cd0020131 WW Two conserved tryptophans domain; also known as 98.42
smart0045632 WW Domain with 2 conserved Trp (W) residues. Also 98.42
smart0045632 WW Domain with 2 conserved Trp (W) residues. Also 98.3
cd0020131 WW Two conserved tryptophans domain; also known as 98.16
KOG1891271 consensus Proline binding protein WW45 [General fu 97.85
KOG3259163 consensus Peptidyl-prolyl cis-trans isomerase [Pos 97.41
KOG3259163 consensus Peptidyl-prolyl cis-trans isomerase [Pos 97.3
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 97.06
KOG19841007 consensus Vesicle coat complex COPII, subunit SFB3 96.98
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 96.74
KOG0132894 consensus RNA polymerase II C-terminal domain-bind 96.23
KOG4849498 consensus mRNA cleavage factor I subunit/CPSF subu 95.89
KOG1984 1007 consensus Vesicle coat complex COPII, subunit SFB3 95.65
PHA032473151 large tegument protein UL36; Provisional 95.63
KOG03071049 consensus Vesicle coat complex COPII, subunit SEC3 95.33
KOG0150336 consensus Spliceosomal protein FBP21 [RNA processi 94.87
PHA032473151 large tegument protein UL36; Provisional 94.79
KOG0940358 consensus Ubiquitin protein ligase RSP5/NEDD4 [Pos 93.66
KOG4302 660 consensus Microtubule-associated protein essential 92.7
KOG1985887 consensus Vesicle coat complex COPII, subunit SEC2 92.61
KOG0132894 consensus RNA polymerase II C-terminal domain-bind 92.03
KOG2893341 consensus Zn finger protein [General function pred 91.17
KOG06081034 consensus Warts/lats-like serine threonine kinases 91.1
KOG3209 984 consensus WW domain-containing protein [General fu 90.98
KOG4592728 consensus Uncharacterized conserved protein [Funct 90.82
PF03154982 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 89.63
KOG1985887 consensus Vesicle coat complex COPII, subunit SEC2 88.57
PF09770808 PAT1: Topoisomerase II-associated protein PAT1; In 88.27
PF03154982 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 86.45
KOG3161861 consensus Predicted E3 ubiquitin ligase [Posttrans 86.12
KOG0150336 consensus Spliceosomal protein FBP21 [RNA processi 86.1
KOG3209 984 consensus WW domain-containing protein [General fu 85.54
KOG2375756 consensus Protein interacting with poly(A)-binding 85.52
KOG2199462 consensus Signal transducing adaptor protein STAM/ 84.79
KOG2893341 consensus Zn finger protein [General function pred 84.76
KOG4592728 consensus Uncharacterized conserved protein [Funct 84.3
KOG4368757 consensus Predicted RNA binding protein, contains 83.45
KOG0144510 consensus RNA-binding protein CUGBP1/BRUNO (RRM su 82.85
KOG1830518 consensus Wiskott Aldrich syndrome proteins [Cytos 82.13
>COG5104 PRP40 Splicing factor [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-67  Score=560.88  Aligned_cols=511  Identities=24%  Similarity=0.398  Sum_probs=404.8

Q ss_pred             CCCCCCcEEEEcCCCCceeecCCCcccccCCCCcchhhhhhccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChHHHHHH
Q 002862          227 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAR  306 (873)
Q Consensus       227 ~~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~~~~  306 (873)
                      ..+.++|++.+++|||+||||..||+|+|++|.+++...|......+|+++.+.||++||||..|.||+|..|.+.+...
T Consensus        11 ~~~~s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~~e~~l~~~~Wke~~TadGkvyyyN~~TREs~W~iP~e~KkVe   90 (590)
T COG5104          11 GEARSEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEEDLDVDPWKECRTADGKVYYYNSITRESRWKIPPERKKVE   90 (590)
T ss_pred             ccHHHHHHHhhCCCCceEEEecccccccccChHHHhcchHhhhchhhHHHHhhcCCceEEecCccccccccCChhhhccC
Confidence            44568999999999999999999999999999999888777778889999999999999999999999999999876422


Q ss_pred             HHHHHhhhcCCCCCCCCCCCCccCCCCCcccCCCCccCCCccchhcccCCcccccccccccCCccccCCCCCCCcccccc
Q 002862          307 EQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSSV  386 (873)
Q Consensus       307 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  386 (873)
                      .-++.    . ..        .+|                  ..+.+++-.+++             +            
T Consensus        91 ~~~eQ----K-~~--------~~S------------------~i~~ngn~~ait-------------~------------  114 (590)
T COG5104          91 PIAEQ----K-HD--------ERS------------------MIGGNGNDMAIT-------------D------------  114 (590)
T ss_pred             cHHhh----h-hH--------HHH------------------HhccCCCccccc-------------c------------
Confidence            11110    0 00        000                  000000000000             0            


Q ss_pred             ccccCCCCCccccccccccccccccccccchhHHHhhhcccccccccccCCCCCCCCCchhhhhhhccccccccchhHHh
Q 002862          387 VANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEK  466 (873)
Q Consensus       387 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~e~~~~~~~~~k~~~~~e~k  466 (873)
                           +.     ...|        +..  .+.       ..++.+..                       ++        
T Consensus       115 -----~e-----~~eP--------~~~--~~~-------~~sQy~~~-----------------------st--------  136 (590)
T COG5104         115 -----HE-----TSEP--------KYL--LGR-------LMSQYGIT-----------------------ST--------  136 (590)
T ss_pred             -----cc-----cccc--------hhH--HHH-------HHHhhcch-----------------------hH--------
Confidence                 00     0000        000  000       00000000                       00        


Q ss_pred             hhhhhhhhhcCHHHHHHHHHHHHHhcCCCCCCcHHHHHHHhhcCccccccCC-hHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 002862          467 TVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRT-LGERKTAFNEYLGQKKKQDAEERRLKL  545 (873)
Q Consensus       467 ~~~~e~~~~~skeeAk~aFk~LL~e~~V~s~~tWe~~~~~i~~DpRy~al~~-~~ERKqlFeeYl~~~~k~E~eekr~~~  545 (873)
                       .  ..+...|+|+|+.+|+.||++++|+++|+|.++++.+ .|||||.|.+ +.+||.+|++|+.+..+++++++..+.
T Consensus       137 -~--~~v~r~T~E~AEk~F~~~L~e~qVdstw~~~r~i~el-~D~r~~~V~~DP~~rK~~f~kY~~n~~~dq~~~e~n~~  212 (590)
T COG5104         137 -K--DAVYRLTKEEAEKEFITMLKENQVDSTWPIFRAIEEL-RDPRYWMVDTDPLWRKDLFKKYFENQEKDQREEEENKQ  212 (590)
T ss_pred             -H--HHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHh-cCccceeecCChHHHHHHHHHHHHhhhhhhhHHHHhHH
Confidence             0  1122358999999999999999999999999999988 8999998875 579999999999999999999999999


Q ss_pred             HHhHHHHHHHHHhcccCCCcccHHHHHHHhcCChhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002862          546 KKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLE  625 (873)
Q Consensus       546 kkare~F~~lLee~~~i~~~trW~~a~~~~~~Dprfkav~~e~eRe~lF~eyi~~L~kkeke~~~~~rk~~~~ef~~lL~  625 (873)
                      .+.+++|.+||..+..|+++|+|.+|+.+|.++|.|+++.++++++++|++|++.|-.-+++-.+..+..++.+|+++|+
T Consensus       213 ~k~~~ef~kml~~n~~I~~yT~w~t~k~~fs~hP~y~s~~nE~~krQ~F~~ykdkl~~~ek~~~k~~~~~al~~l~e~lr  292 (590)
T COG5104         213 RKYINEFCKMLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKYKDKLGCYEKYVGKHMGGTALGRLEEVLR  292 (590)
T ss_pred             HHHHHHHHHHhcCCCccceeehhhhHHhhhccCcchhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhcccchHHHHHHHH
Confidence            99999999999998899999999999999999999999999999999999999999999998888889999999999999


Q ss_pred             hccccCCCCcHHHHHHHhhhhhhhhc------CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002862          626 SCDFIKANTQWRKVQDRLEADERCSR------LDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLME  699 (873)
Q Consensus       626 ~~~~It~~t~W~ev~~~l~~D~r~~~------l~~~drl~lFed~i~~Leke~ee~kr~~k~~~rR~eRk~Rd~F~~LL~  699 (873)
                      +++ -...++|.-.+-.+..++||..      |+..|.|--|.+|++.||++.--.....+.+..+.+|++||+|+.||.
T Consensus       293 ~l~-~E~f~~w~l~~~~fd~~~ry~~n~~mk~l~~~d~L~~f~~~v~~lE~el~~~~~e~k~~~~~~~r~~rd~FrtLLr  371 (590)
T COG5104         293 SLG-SETFIIWLLNHYVFDSVVRYLKNKEMKPLDRKDILFSFIRYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTLLR  371 (590)
T ss_pred             hcC-cccchhhhhhhhhhcccHHHHhhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            886 3567799966667888888854      567888899999999999998766666677778899999999999999


Q ss_pred             HHhhcCccCCCCChHHHHHHHhcCchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCHHH
Q 002862          700 ADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFED  779 (873)
Q Consensus       700 E~~k~g~I~~~t~W~e~~~~ikdD~rf~~l~~~~~gS~~ldLF~d~veeL~k~~~e~k~~i~d~Lk~~~i~~~s~wt~ee  779 (873)
                      ++.-.|+|+..++|+++|++|+|||||++|+ |++||+|+|||+|+|-+|+..|...|+.+.+.+.-+.|..+.+-..++
T Consensus       372 ~l~~~~ki~~R~kwk~~yp~iKddprfLnlL-Gr~gsspldlf~D~ivDlenmy~~~r~~~~~~~~~~qis~~d~~~vde  450 (590)
T COG5104         372 KLYSEGKIYYRMKWKNAYPLIKDDPRFLNLL-GRTGSSPLDLFFDFIVDLENMYGFARRSYERETRTGQISPTDRRAVDE  450 (590)
T ss_pred             HhhhhhhhhhhhhhhhhcccccCCHHHHHHh-ccCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCccccchHH
Confidence            9999999999999999999999999999997 899999999999999999999999999998888878888776666677


Q ss_pred             HHHHhh-----hcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhchhhhhhccCCcccch
Q 002862          780 FKASVL-----EDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDE----FFDLLCSVKVRYLQLLHGKIADNF  850 (873)
Q Consensus       780 ~~~~l~-----ed~r~~~l~~~nlk~iFe~li~r~kEKe~ee~rk~~r~~~~----F~~lL~~~k~It~~~~~~~~~d~~  850 (873)
                      |.+.+.     .+..|.+++.+++.+|.|.+|.+..||-.......+|+.+.    |.-||..    ++ ...+.+..++
T Consensus       451 i~~~~~Ek~eE~e~~~d~v~kE~is~i~D~~I~qr~EkIqqKl~N~R~~le~~K~~~~lL~q~----t~-~~t~k~k~st  525 (590)
T COG5104         451 IFEAIAEKKEEGEIKFDKVDKEDISLIVDGLIKQRNEKIQQKLQNERRILEQKKHYFWLLLQR----TY-TKTGKPKPST  525 (590)
T ss_pred             HHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHhHHH----HH-hccCCCCcch
Confidence            655543     34457788999999999999988766655444444555443    4444433    22 2357889999


Q ss_pred             HHHHhhcChHHH
Q 002862          851 WRVAKSSVPLEM  862 (873)
Q Consensus       851 ~~~~~~~~~~~~  862 (873)
                      |+.+...|.+.+
T Consensus       526 ~D~~~k~L~Es~  537 (590)
T COG5104         526 WDLASKELGESL  537 (590)
T ss_pred             HHHHHHHHhHhH
Confidence            998877665543

>KOG0155 consensus Transcription factor CA150 [Transcription] Back     alignment and domain information
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification] Back     alignment and domain information
>KOG0155 consensus Transcription factor CA150 [Transcription] Back     alignment and domain information
>COG5104 PRP40 Splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification] Back     alignment and domain information
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction [] Back     alignment and domain information
>smart00441 FF Contains two conserved F residues Back     alignment and domain information
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction [] Back     alignment and domain information
>smart00441 FF Contains two conserved F residues Back     alignment and domain information
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet Back     alignment and domain information
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet Back     alignment and domain information
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information
>smart00456 WW Domain with 2 conserved Trp (W) residues Back     alignment and domain information
>smart00456 WW Domain with 2 conserved Trp (W) residues Back     alignment and domain information
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information
>KOG1891 consensus Proline binding protein WW45 [General function prediction only] Back     alignment and domain information
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription] Back     alignment and domain information
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] Back     alignment and domain information
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PHA03247 large tegument protein UL36; Provisional Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification] Back     alignment and domain information
>PHA03247 large tegument protein UL36; Provisional Back     alignment and domain information
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription] Back     alignment and domain information
>KOG2893 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG3209 consensus WW domain-containing protein [General function prediction only] Back     alignment and domain information
>KOG4592 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene Back     alignment and domain information
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division [] Back     alignment and domain information
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene Back     alignment and domain information
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification] Back     alignment and domain information
>KOG3209 consensus WW domain-containing protein [General function prediction only] Back     alignment and domain information
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification] Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information
>KOG2893 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>KOG4592 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only] Back     alignment and domain information
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query873
2l5f_A92 Solution Structure Of The Tandem Ww Domains From Hy 4e-15
1o6w_A75 Solution Structure Of The Prp40 Ww Domain Pair Of T 9e-10
2kzg_A71 The Structure Of An Ff Domain From Human HypaFBP11 4e-09
2jxw_A75 Solution Structure Of The Tandem Ww Domains Of Fbp2 4e-06
2lks_A50 Ff11-60 Length = 50 6e-06
2l9v_A49 Nmr Structure Of The Ff Domain L24a Mutant's Foldin 4e-05
3hfh_A190 Crystal Structure Of Tandem Ff Domains Length = 190 5e-04
1e0l_A37 Fbp28ww Domain From Mus Musculus Length = 37 7e-04
1ywi_A41 Structure Of The Fbp11ww1 Domain Complexed To The P 8e-04
>pdb|2L5F|A Chain A, Solution Structure Of The Tandem Ww Domains From HypaFBP11 Length = 92 Back     alignment and structure 
Iteration: 1

 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 51/78 (65%)
Query: 225 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRK 284
           +A G ++ W EH S DGR YY+N  T+ STW+KP +L T  E+  +   WKE+ S  G+ 
Sbjct: 8   TASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKT 67
Query: 285 YYYNKVTKQSKWSLPDEL 302
           YYYN  TK+S+W+ P EL
Sbjct: 68  YYYNSQTKESRWAKPKEL 85
>pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The Yeast Splicing Factor Prp40 Length = 75 Back     alignment and structure
>pdb|2KZG|A Chain A, A Transient And Low Populated Protein Folding Intermediate At Atomic Resolution Length = 71 Back     alignment and structure
>pdb|2JXW|A Chain A, Solution Structure Of The Tandem Ww Domains Of Fbp21 Length = 75 Back     alignment and structure
>pdb|2LKS|A Chain A, Ff11-60 Length = 50 Back     alignment and structure
>pdb|2L9V|A Chain A, Nmr Structure Of The Ff Domain L24a Mutant's Folding Transition State Length = 49 Back     alignment and structure
>pdb|3HFH|A Chain A, Crystal Structure Of Tandem Ff Domains Length = 190 Back     alignment and structure
>pdb|1E0L|A Chain A, Fbp28ww Domain From Mus Musculus Length = 37 Back     alignment and structure
>pdb|1YWI|A Chain A, Structure Of The Fbp11ww1 Domain Complexed To The Peptide Apptppplpp Length = 41 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query873
3hfh_A190 Transcription elongation regulator 1; helix bundle 6e-45
3hfh_A190 Transcription elongation regulator 1; helix bundle 3e-21
3hfh_A190 Transcription elongation regulator 1; helix bundle 1e-20
3hfh_A190 Transcription elongation regulator 1; helix bundle 1e-09
3hfh_A190 Transcription elongation regulator 1; helix bundle 5e-06
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 1e-26
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 3e-08
2l5f_A92 PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA 2e-26
2l5f_A92 PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA 5e-08
2jxw_A75 WW domain-binding protein 4; WW domain containing 2e-24
2jxw_A75 WW domain-binding protein 4; WW domain containing 4e-08
2jxw_A75 WW domain-binding protein 4; WW domain containing 5e-08
1uzc_A71 Hypothetical protein FLJ21157; nuclear protein, st 5e-23
1uzc_A71 Hypothetical protein FLJ21157; nuclear protein, st 5e-05
2doe_A83 Transcription elongation regulator 1; FF domain, s 6e-20
2doe_A83 Transcription elongation regulator 1; FF domain, s 7e-08
2doe_A83 Transcription elongation regulator 1; FF domain, s 8e-08
2doe_A83 Transcription elongation regulator 1; FF domain, s 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1tk7_A88 CG4244-PB; WW domain, notch, signaling protein; NM 9e-15
1tk7_A88 CG4244-PB; WW domain, notch, signaling protein; NM 8e-04
1e0l_A37 Formin binding protein; SH3 domain, WW domain, FBP 4e-14
1e0l_A37 Formin binding protein; SH3 domain, WW domain, FBP 1e-11
2kxq_A90 E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG 3e-13
2ysi_A40 Transcription elongation regulator 1; Ca150, FBP28 6e-12
2ysi_A40 Transcription elongation regulator 1; Ca150, FBP28 1e-10
1ywi_A41 Formin-binding protein 3; WW domain, class II, pro 1e-11
1ywi_A41 Formin-binding protein 3; WW domain, class II, pro 1e-10
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-11
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-10
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-09
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-08
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-07
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-05
2dk1_A50 WW domain-binding protein 4; WBP-4, formin- bindin 5e-11
2dk1_A50 WW domain-binding protein 4; WBP-4, formin- bindin 2e-10
2dod_A82 Transcription elongation regulator 1; FF domain, s 1e-10
2dod_A82 Transcription elongation regulator 1; FF domain, s 1e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-04
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 3e-09
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 6e-07
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 1e-07
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 5e-04
2ysh_A40 GAS-7, growth-arrest-specific protein 7; WW domain 3e-07
2ysh_A40 GAS-7, growth-arrest-specific protein 7; WW domain 1e-05
2dk7_A73 Transcription elongation regulator 1; structural g 8e-07
2dk7_A73 Transcription elongation regulator 1; structural g 1e-05
2cqn_A77 Formin-binding protein 3; FF domain, structural ge 1e-06
1wr4_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 8e-06
2dof_A85 Transcription elongation regulator 1; FF domain, s 1e-05
2dof_A85 Transcription elongation regulator 1; FF domain, s 1e-04
2dof_A85 Transcription elongation regulator 1; FF domain, s 1e-04
1wr3_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 1e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-05
2dmv_A43 Itchy homolog E3 ubiquitin protein ligase; WW doma 2e-05
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-05
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 4e-05
1ymz_A43 CC45; artificial protein, computational design, un 2e-05
1dx0_A219 Prion protein; brain, repeat; NMR {Bos taurus} SCO 6e-05
1dx0_A219 Prion protein; brain, repeat; NMR {Bos taurus} SCO 8e-05
2kyk_A39 E3 ubiquitin-protein ligase itchy homolog; LMP2A, 9e-05
2kyk_A39 E3 ubiquitin-protein ligase itchy homolog; LMP2A, 7e-04
2ysg_A40 Syntaxin-binding protein 4; synip, STXBP4, WW doma 9e-05
1e0m_A37 Wwprototype; SH3 prototype, protein design, de nov 1e-04
2ysb_A49 Salvador homolog 1 protein; WW domain, structural 1e-04
1wr7_A41 NEDD4-2; all-beta, ligase; NMR {Mus musculus} Leng 2e-04
2juc_A59 PRE-mRNA-splicing factor URN1; FF, helical bundle, 6e-04
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 7e-04
2law_A38 Yorkie homolog; YAP, SMAD1, CDK, signal transducti 7e-04
2jmf_A53 E3 ubiquitin-protein ligase suppressor of deltex; 8e-04
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 Back     alignment and structure
 Score =  159 bits (402), Expect = 6e-45
 Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 4/189 (2%)

Query: 478 KLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQD 537
                  F  +L    V +  TW+  L  I+ D RY  L    ER   F++Y+  + +++
Sbjct: 4   GSARMXQFXDMLLERGVSAFSTWEXELHXIVFDPRYLLLNPX-ERXQVFDQYVXTRAEEE 62

Query: 538 AEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDH 597
             E    + +A +D+  M+EE+        +S+       D RF A+E   DR+ +F++ 
Sbjct: 63  RREXXNXIMQAXEDFXXMMEEAX-FNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEF 121

Query: 598 LDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMD- 656
           +   +  E   +    +    ++ + L +   + + ++W  V D +E+D R   +D    
Sbjct: 122 VAAARXXEXEDSXTRGEXIXSDFFELLSNHH-LDSQSRWSXVXDXVESDPRYXAVDSSSM 180

Query: 657 RLEIFQEYL 665
           R ++F +Y+
Sbjct: 181 REDLFXQYI 189
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 Back     alignment and structure
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 Back     alignment and structure
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 Back     alignment and structure
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75 Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75 Back     alignment and structure
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 Back     alignment and structure
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 Back     alignment and structure
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 Back     alignment and structure
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88 Back     alignment and structure
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88 Back     alignment and structure
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Length = 37 Back     alignment and structure
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Length = 37 Back     alignment and structure
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Length = 90 Back     alignment and structure
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Length = 40 Back     alignment and structure
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Length = 40 Back     alignment and structure
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Length = 41 Back     alignment and structure
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Length = 41 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 50 Back     alignment and structure
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 50 Back     alignment and structure
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 82 Back     alignment and structure
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 82 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40 Back     alignment and structure
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40 Back     alignment and structure
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 77 Back     alignment and structure
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Length = 36 Back     alignment and structure
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 85 Back     alignment and structure
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 85 Back     alignment and structure
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 85 Back     alignment and structure
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Length = 36 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 43 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Length = 43 Back     alignment and structure
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219 Back     alignment and structure
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219 Back     alignment and structure
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Length = 39 Back     alignment and structure
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Length = 39 Back     alignment and structure
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40 Back     alignment and structure
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Length = 37 Back     alignment and structure
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Length = 49 Back     alignment and structure
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Length = 41 Back     alignment and structure
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae} Length = 59 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Length = 38 Back     alignment and structure
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Length = 53 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query873
3hfh_A190 Transcription elongation regulator 1; helix bundle 100.0
3hfh_A190 Transcription elongation regulator 1; helix bundle 99.93
2l5f_A92 PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA 99.81
2jxw_A75 WW domain-binding protein 4; WW domain containing 99.8
1uzc_A71 Hypothetical protein FLJ21157; nuclear protein, st 99.74
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 99.73
2dod_A82 Transcription elongation regulator 1; FF domain, s 99.72
2b7e_A59 PRE-mRNA processing protein PRP40; structural prot 99.71
2kxq_A90 E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG 99.68
1tk7_A88 CG4244-PB; WW domain, notch, signaling protein; NM 99.65
2doe_A83 Transcription elongation regulator 1; FF domain, s 99.33
2doe_A83 Transcription elongation regulator 1; FF domain, s 99.26
2juc_A59 PRE-mRNA-splicing factor URN1; FF, helical bundle, 99.26
2dk7_A73 Transcription elongation regulator 1; structural g 99.07
2cqn_A77 Formin-binding protein 3; FF domain, structural ge 99.05
1e0l_A37 Formin binding protein; SH3 domain, WW domain, FBP 98.99
2ysi_A40 Transcription elongation regulator 1; Ca150, FBP28 98.93
2cqn_A77 Formin-binding protein 3; FF domain, structural ge 98.89
1uzc_A71 Hypothetical protein FLJ21157; nuclear protein, st 98.84
1e0l_A37 Formin binding protein; SH3 domain, WW domain, FBP 98.8
1ywi_A41 Formin-binding protein 3; WW domain, class II, pro 98.76
2dk1_A50 WW domain-binding protein 4; WBP-4, formin- bindin 98.75
2ysh_A40 GAS-7, growth-arrest-specific protein 7; WW domain 98.74
1e0m_A37 Wwprototype; SH3 prototype, protein design, de nov 98.72
2dod_A82 Transcription elongation regulator 1; FF domain, s 98.71
1wr7_A41 NEDD4-2; all-beta, ligase; NMR {Mus musculus} 98.71
2ysi_A40 Transcription elongation regulator 1; Ca150, FBP28 98.7
1wr3_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 98.7
1ymz_A43 CC45; artificial protein, computational design, un 98.68
2kyk_A39 E3 ubiquitin-protein ligase itchy homolog; LMP2A, 98.65
2dmv_A43 Itchy homolog E3 ubiquitin protein ligase; WW doma 98.64
1wr4_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 98.62
1ymz_A43 CC45; artificial protein, computational design, un 98.62
2ysg_A40 Syntaxin-binding protein 4; synip, STXBP4, WW doma 98.61
2law_A38 Yorkie homolog; YAP, SMAD1, CDK, signal transducti 98.6
1ywi_A41 Formin-binding protein 3; WW domain, class II, pro 98.6
2ez5_W46 Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma 98.58
2ysf_A40 E3 ubiquitin-protein ligase itchy homolog; AIP4, N 98.57
2djy_A42 SMAD ubiquitination regulatory factor 2; beta shee 98.57
2dwv_A49 Salvador homolog 1 protein; WW domain, dimer, stru 98.54
2l4j_A46 YES-associated protein 2 (YAP2); WW domain, medaka 98.53
2kpz_A49 E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV 98.52
1e0m_A37 Wwprototype; SH3 prototype, protein design, de nov 98.51
2juc_A59 PRE-mRNA-splicing factor URN1; FF, helical bundle, 98.49
1i5h_W50 Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, 98.49
2ysb_A49 Salvador homolog 1 protein; WW domain, structural 98.49
1e0n_A27 Hypothetical protein; YJQ8WW domain, WW domain, sa 98.47
2b7e_A59 PRE-mRNA processing protein PRP40; structural prot 98.45
2jv4_A54 Peptidyl-prolyl CIS/trans isomerase; ppiase domain 98.44
2zaj_A49 Membrane-associated guanylate kinase, WW and PDZ d 98.43
2ysh_A40 GAS-7, growth-arrest-specific protein 7; WW domain 98.43
1wr3_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 98.42
2dk1_A50 WW domain-binding protein 4; WBP-4, formin- bindin 98.42
2ysc_A39 Amyloid beta A4 precursor protein-binding family B 98.39
1e0n_A27 Hypothetical protein; YJQ8WW domain, WW domain, sa 98.38
1wr7_A41 NEDD4-2; all-beta, ligase; NMR {Mus musculus} 98.38
2dk7_A73 Transcription elongation regulator 1; structural g 98.37
2jxw_A75 WW domain-binding protein 4; WW domain containing 98.37
2jx8_A52 Hpcif1, phosphorylated CTD-interacting factor 1; p 98.35
2law_A38 Yorkie homolog; YAP, SMAD1, CDK, signal transducti 98.35
2jmf_A53 E3 ubiquitin-protein ligase suppressor of deltex; 98.35
2kyk_A39 E3 ubiquitin-protein ligase itchy homolog; LMP2A, 98.34
1wr4_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 98.34
2dwv_A49 Salvador homolog 1 protein; WW domain, dimer, stru 98.33
2ho2_A38 Fe65 protein, amyloid beta A4 protein-binding fami 98.31
3l4h_A109 E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d 98.31
2yse_A60 Membrane-associated guanylate kinase, WW and PDZ d 98.3
2dmv_A43 Itchy homolog E3 ubiquitin protein ligase; WW doma 98.29
2jv4_A54 Peptidyl-prolyl CIS/trans isomerase; ppiase domain 98.27
2ysg_A40 Syntaxin-binding protein 4; synip, STXBP4, WW doma 98.27
2kpz_A49 E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV 98.27
2ysd_A57 Membrane-associated guanylate kinase, WW and PDZ d 98.27
2ysf_A40 E3 ubiquitin-protein ligase itchy homolog; AIP4, N 98.24
2djy_A42 SMAD ubiquitination regulatory factor 2; beta shee 98.23
2ez5_W46 Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma 98.2
1wmv_A54 WWOX, WW domain containing oxidoreductase; all-bet 98.2
2l4j_A46 YES-associated protein 2 (YAP2); WW domain, medaka 98.18
1i5h_W50 Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, 98.16
2ysb_A49 Salvador homolog 1 protein; WW domain, structural 98.14
2ho2_A38 Fe65 protein, amyloid beta A4 protein-binding fami 98.13
2jx8_A52 Hpcif1, phosphorylated CTD-interacting factor 1; p 98.09
2zaj_A49 Membrane-associated guanylate kinase, WW and PDZ d 98.08
2e45_A55 Fe65 protein, amyloid beta A4 precursor protein-bi 98.08
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 98.07
2l5f_A92 PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA 98.06
2dof_A85 Transcription elongation regulator 1; FF domain, s 98.04
2jmf_A53 E3 ubiquitin-protein ligase suppressor of deltex; 98.03
2dof_A85 Transcription elongation regulator 1; FF domain, s 98.0
2ysc_A39 Amyloid beta A4 precursor protein-binding family B 97.99
1jmq_A46 YAP65, 65 kDa YES-associated protein; polyproline 97.99
2yse_A60 Membrane-associated guanylate kinase, WW and PDZ d 97.98
1tk7_A88 CG4244-PB; WW domain, notch, signaling protein; NM 97.97
2ysd_A57 Membrane-associated guanylate kinase, WW and PDZ d 97.96
2kxq_A90 E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG 97.93
1wmv_A54 WWOX, WW domain containing oxidoreductase; all-bet 97.87
2e45_A55 Fe65 protein, amyloid beta A4 precursor protein-bi 97.83
1jmq_A46 YAP65, 65 kDa YES-associated protein; polyproline 97.8
3l4h_A109 E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d 97.48
3tc5_A166 Peptidyl-prolyl CIS-trans isomerase NIMA-interact; 97.44
3tc5_A166 Peptidyl-prolyl CIS-trans isomerase NIMA-interact; 96.95
1eg3_A261 Dystrophin; EF-hand like domain, WW domain, struct 96.59
1eg3_A261 Dystrophin; EF-hand like domain, WW domain, struct 95.9
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 95.76
2kfd_A69 PRE-mRNA-processing protein PRP40; FF domain, mRNA 95.09
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 93.75
1yw5_A177 Peptidyl prolyl CIS/trans isomerase; WW-domain, pp 93.56
2k85_A69 Glucocorticoid receptor DNA-binding factor 1; FF d 93.39
1yw5_A177 Peptidyl prolyl CIS/trans isomerase; WW-domain, pp 92.26
2kfd_A69 PRE-mRNA-processing protein PRP40; FF domain, mRNA 91.94
2k85_A69 Glucocorticoid receptor DNA-binding factor 1; FF d 86.75
3le4_A79 Microprocessor complex subunit DGCR8; WW motif, di 85.07
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Back     alignment and structure
Probab=100.00  E-value=8.2e-39  Score=326.86  Aligned_cols=188  Identities=22%  Similarity=0.434  Sum_probs=160.0

Q ss_pred             cCHHHHHHHHHHHHHhcCCCCCCcHHHHHHHhhcCccccccCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH
Q 002862          476 ANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKM  555 (873)
Q Consensus       476 ~skeeAk~aFk~LL~e~~V~s~~tWe~~~~~i~~DpRy~al~~~~ERKqlFeeYl~~~~k~E~eekr~~~kkare~F~~l  555 (873)
                      .|++||+++|++||++++|+++|+|++++++|++||||++| +.++||++|++||.++.++++++++.+.++++++|.+|
T Consensus         2 ~s~ee~~~~F~~lL~~~~V~~~~~We~~~~~i~~Dpry~al-~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~l   80 (190)
T 3hfh_A            2 PLGSARMXQFXDMLLERGVSAFSTWEXELHXIVFDPRYLLL-NPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXXM   80 (190)
T ss_dssp             CCSCHHHHHHHHHHHHTTCCSSSCHHHHGGGTTTSGGGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             CCHHHHHHHHHHHHHHcCcCCCCchhhhhhhhccCcchhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36889999999999999999999999999999999999999 78999999999999999999999999999999999999


Q ss_pred             HHhcccCCCcccHHHHHHHhcCChhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCc
Q 002862          556 LEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQ  635 (873)
Q Consensus       556 Lee~~~i~~~trW~~a~~~~~~Dprfkav~~e~eRe~lF~eyi~~L~kkeke~~~~~rk~~~~ef~~lL~~~~~It~~t~  635 (873)
                      |+++ +|+++++|.+|.++|.+||||++|.+++||+.||++||.+|+++++++++..+++++.+|.+||.+. .|++.|+
T Consensus        81 L~e~-~i~~~~~w~~~~~~~~~Dpr~~~~~~~~eR~~lF~eyi~~lkk~e~e~~~~~r~~~~~~f~~lL~~~-~l~~~t~  158 (190)
T 3hfh_A           81 MEEA-XFNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEFVAAARXXEXEDSXTRGEXIXSDFFELLSNH-HLDSQSR  158 (190)
T ss_dssp             ---------------------TCCTTTTSCTTTTTTTTHHHHHHHHSTTTTTHHHHTHHHHHHHHHHHHHTS-CCCTTCC
T ss_pred             HHHc-CCCCCCCHHHHHHHhCCCchhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CCCCCCC
Confidence            9986 6999999999999999999999999889999999999999999999888888999999999999998 6999999


Q ss_pred             HHHHHHHhhhhhhhhcCChh-hHHHHHHHHHH
Q 002862          636 WRKVQDRLEADERCSRLDKM-DRLEIFQEYLN  666 (873)
Q Consensus       636 W~ev~~~l~~D~r~~~l~~~-drl~lFed~i~  666 (873)
                      |.+|+..|.+|++|.+|+.. +|++||++||+
T Consensus       159 W~~~~~~l~~D~ry~~v~~~~~R~~~F~eyi~  190 (190)
T 3hfh_A          159 WSXVXDXVESDPRYXAVDSSSMREDLFXQYIE  190 (190)
T ss_dssp             HHHHHHHHSSSHHHHTSCCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhChHhhcCCCHHHHHHHHHHHhC
Confidence            99999999999999999985 99999999983
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Back     alignment and structure
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Back     alignment and structure
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Back     alignment and structure
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1 Back     alignment and structure
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Back     alignment and structure
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Back     alignment and structure
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Back     alignment and structure
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Back     alignment and structure
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Back     alignment and structure
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Back     alignment and structure
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Back     alignment and structure
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Back     alignment and structure
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Back     alignment and structure
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Back     alignment and structure
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Back     alignment and structure
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Back     alignment and structure
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Back     alignment and structure
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Back     alignment and structure
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Back     alignment and structure
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Back     alignment and structure
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Back     alignment and structure
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Back     alignment and structure
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Back     alignment and structure
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Back     alignment and structure
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Back     alignment and structure
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Back     alignment and structure
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Back     alignment and structure
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Back     alignment and structure
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Back     alignment and structure
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Back     alignment and structure
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Back     alignment and structure
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 Back     alignment and structure
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1 Back     alignment and structure
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} Back     alignment and structure
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} Back     alignment and structure
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Back     alignment and structure
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 Back     alignment and structure
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Back     alignment and structure
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Back     alignment and structure
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens} Back     alignment and structure
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Back     alignment and structure
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Back     alignment and structure
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Back     alignment and structure
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Back     alignment and structure
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A Back     alignment and structure
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} Back     alignment and structure
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} Back     alignment and structure
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Back     alignment and structure
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Back     alignment and structure
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Back     alignment and structure
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Back     alignment and structure
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Back     alignment and structure
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Back     alignment and structure
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A Back     alignment and structure
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens} Back     alignment and structure
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} Back     alignment and structure
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Back     alignment and structure
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Back     alignment and structure
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Back     alignment and structure
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Back     alignment and structure
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* Back     alignment and structure
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Back     alignment and structure
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* Back     alignment and structure
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} Back     alignment and structure
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... Back     alignment and structure
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... Back     alignment and structure
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A Back     alignment and structure
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} Back     alignment and structure
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens} Back     alignment and structure
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} Back     alignment and structure
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens} Back     alignment and structure
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 873
d1uzca_69 a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T 1e-19
d1uzca_69 a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T 2e-13
d1uzca_69 a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T 8e-05
d2doea170 a.159.2.1 (A:784-853) Transcription elongation reg 1e-18
d2doea170 a.159.2.1 (A:784-853) Transcription elongation reg 1e-14
d2doea170 a.159.2.1 (A:784-853) Transcription elongation reg 8e-10
d2b7ea156 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP 3e-16
d2doda169 a.159.2.1 (A:651-719) Transcription elongation reg 1e-15
d2doda169 a.159.2.1 (A:651-719) Transcription elongation reg 1e-13
d2doda169 a.159.2.1 (A:651-719) Transcription elongation reg 3e-07
d2dofa172 a.159.2.1 (A:888-959) Transcription elongation reg 3e-15
d2dofa172 a.159.2.1 (A:888-959) Transcription elongation reg 9e-15
d2dofa172 a.159.2.1 (A:888-959) Transcription elongation reg 2e-08
d1o6wa246 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's 2e-14
d1o6wa246 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's 5e-10
d2rm0w137 b.72.1.1 (W:1-37) Formin binding protein FBP28 dom 2e-13
d2rm0w137 b.72.1.1 (W:1-37) Formin binding protein FBP28 dom 2e-11
d2dk1a138 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP 2e-11
d2dk1a138 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP 2e-11
d1o6wa129 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's y 1e-10
d1o6wa129 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's y 4e-10
d1ywia128 b.72.1.1 (A:15-42) Huntingtin-interacting protein 2e-10
d1ywia128 b.72.1.1 (A:15-42) Huntingtin-interacting protein 5e-10
d1i5hw_50 b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain 1e-05
d1i5hw_50 b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain 4e-04
d1tk7a145 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) 2e-05
d1tk7a145 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) 5e-04
d1pina134 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho 5e-05
d1pina134 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho 0.002
d2jmfa133 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII 6e-05
d2jmfa133 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII 7e-04
d1jmqa_46 b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens 1e-04
d1jmqa_46 b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens 0.003
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 6e-04
d2cqna164 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapi 0.001
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Hypa/FBP11
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (200), Expect = 1e-19
 Identities = 31/67 (46%), Positives = 43/67 (64%)

Query: 469 EQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNE 528
            ++ + +  K EAK AFK LL+   V S+ +W+QA++ IIND RY AL  L E+K AFN 
Sbjct: 3   AKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNA 62

Query: 529 YLGQKKK 535
           Y  Q +K
Sbjct: 63  YKVQTEK 69
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 Back     information, alignment and structure
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 Back     information, alignment and structure
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 Back     information, alignment and structure
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 Back     information, alignment and structure
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46 Back     information, alignment and structure
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46 Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37 Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37 Back     information, alignment and structure
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 Back     information, alignment and structure
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 Back     information, alignment and structure
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 29 Back     information, alignment and structure
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 29 Back     information, alignment and structure
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 28 Back     information, alignment and structure
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 28 Back     information, alignment and structure
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50 Back     information, alignment and structure
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50 Back     information, alignment and structure
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45 Back     information, alignment and structure
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45 Back     information, alignment and structure
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33 Back     information, alignment and structure
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33 Back     information, alignment and structure
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46 Back     information, alignment and structure
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46 Back     information, alignment and structure
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure
>d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 64 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query873
d2b7ea156 Pre-mRNA-processing protein PRP40 {Baker's yeast ( 99.68
d1uzca_69 Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} 99.63
d2doda169 Transcription elongation regulator 1 {Human (Homo 99.53
d2doea170 Transcription elongation regulator 1 {Human (Homo 99.44
d2dofa172 Transcription elongation regulator 1 {Human (Homo 99.41
d2doea170 Transcription elongation regulator 1 {Human (Homo 99.19
d2rm0w137 Formin binding protein FBP28 domain {Domestic mous 99.19
d1o6wa129 Splicing factor prp40 {Baker's yeast (Saccharomyce 99.17
d2dofa172 Transcription elongation regulator 1 {Human (Homo 99.17
d1ywia128 Huntingtin-interacting protein HYPA/FBP11 {Human ( 99.14
d2dk1a138 WW domain-binding protein 4, WBP4 {Human (Homo sap 99.07
d1uzca_69 Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} 99.05
d1o6wa246 Splicing factor prp40 {Baker's yeast (Saccharomyce 99.04
d2doda169 Transcription elongation regulator 1 {Human (Homo 98.99
d2rm0w137 Formin binding protein FBP28 domain {Domestic mous 98.97
d1o6wa129 Splicing factor prp40 {Baker's yeast (Saccharomyce 98.94
d1o6wa246 Splicing factor prp40 {Baker's yeast (Saccharomyce 98.93
d1ywia128 Huntingtin-interacting protein HYPA/FBP11 {Human ( 98.92
d2dk1a138 WW domain-binding protein 4, WBP4 {Human (Homo sap 98.79
d2jmfa133 Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr 98.76
d1pina134 Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId 98.66
d1i5hw_50 Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n 98.59
d1tk7a145 Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso 98.56
d2jmfa133 Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr 98.47
d2b7ea156 Pre-mRNA-processing protein PRP40 {Baker's yeast ( 98.46
d1pina134 Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId 98.44
d1jmqa_46 Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606 98.44
d2cqna164 Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} 98.38
d2cqna164 Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} 98.38
d1jmqa_46 Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606 98.3
d1i5hw_50 Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n 98.26
d1tk7a145 Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso 98.25
d2ho2a133 Amyloid beta A4 precursor protein-binding family B 97.65
d2ho2a133 Amyloid beta A4 precursor protein-binding family B 97.38
d1eg3a338 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 93.4
d1eg3a338 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 90.52
d2ysca126 Amyloid beta A4 precursor protein-binding family B 88.25
>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Pre-mRNA-processing protein PRP40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=9e-18  Score=132.64  Aligned_cols=54  Identities=26%  Similarity=0.517  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHhcCCCCCCcHHHHHHHh-hcCccccccCCh-HHHHHHHHHHHHHH
Q 002862          480 EAKNAFKALLESANVGSDWTWDQALRAI-INDRRYGALRTL-GERKTAFNEYLGQK  533 (873)
Q Consensus       480 eAk~aFk~LL~e~~V~s~~tWe~~~~~i-~~DpRy~al~~~-~ERKqlFeeYl~~~  533 (873)
                      ||+++|++||++++|+++|||+++|++| ++||||++|+++ .|||++||+||.++
T Consensus         1 Ea~~aF~~lL~e~~V~s~wtWeq~~~~i~~~DPrY~al~~~~~eRK~~Fe~Y~~~R   56 (56)
T d2b7ea1           1 EAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSNR   56 (56)
T ss_dssp             HHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHcCCCCCCcHHHHHHHHhccCcchHhhcCChHHHHHHHHHHhhcC
Confidence            6899999999999999999999999986 689999999765 59999999999864
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure